Query 005837
Match_columns 675
No_of_seqs 331 out of 2511
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 14:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 8E-63 1.7E-67 497.1 33.7 371 267-670 60-431 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 9.6E-62 2.1E-66 520.9 39.2 375 267-670 90-470 (519)
3 PTZ00110 helicase; Provisional 100.0 3.5E-57 7.5E-62 509.7 42.7 377 268-674 130-510 (545)
4 KOG0333 U5 snRNP-like RNA heli 100.0 1.7E-57 3.7E-62 472.8 35.2 392 230-657 219-635 (673)
5 COG0513 SrmB Superfamily II DN 100.0 6.3E-57 1.4E-61 503.1 40.9 373 268-669 29-405 (513)
6 PRK04837 ATP-dependent RNA hel 100.0 1E-55 2.2E-60 486.8 41.2 372 268-665 8-381 (423)
7 KOG0328 Predicted ATP-dependen 100.0 1.2E-56 2.6E-61 434.5 28.5 374 266-673 25-398 (400)
8 PRK11776 ATP-dependent RNA hel 100.0 2.7E-55 6E-60 488.4 42.8 368 268-668 4-371 (460)
9 PLN00206 DEAD-box ATP-dependen 100.0 6.3E-55 1.4E-59 489.9 44.3 379 268-674 121-501 (518)
10 PRK10590 ATP-dependent RNA hel 100.0 4.6E-55 1E-59 485.0 42.6 368 269-663 2-369 (456)
11 KOG0338 ATP-dependent RNA heli 100.0 2.9E-56 6.4E-61 461.7 29.5 363 268-657 181-544 (691)
12 PRK11634 ATP-dependent RNA hel 100.0 1.1E-54 2.4E-59 493.7 43.5 371 268-670 6-376 (629)
13 PRK04537 ATP-dependent RNA hel 100.0 2E-54 4.2E-59 489.0 42.9 370 268-663 9-381 (572)
14 PRK11192 ATP-dependent RNA hel 100.0 1.3E-53 2.8E-58 472.0 43.3 366 269-662 2-368 (434)
15 KOG0342 ATP-dependent RNA heli 100.0 3.4E-54 7.3E-59 447.0 32.0 362 266-655 80-446 (543)
16 KOG0326 ATP-dependent RNA heli 100.0 2.2E-54 4.7E-59 425.1 21.8 368 267-670 84-451 (459)
17 KOG0341 DEAD-box protein abstr 100.0 6.6E-55 1.4E-59 437.9 18.5 414 222-660 122-546 (610)
18 KOG0345 ATP-dependent RNA heli 100.0 1.1E-52 2.4E-57 432.5 34.7 364 269-657 5-375 (567)
19 PRK01297 ATP-dependent RNA hel 100.0 6.3E-52 1.4E-56 462.8 43.7 368 268-661 87-457 (475)
20 KOG0340 ATP-dependent RNA heli 100.0 4.4E-53 9.6E-58 422.0 29.5 364 268-664 7-379 (442)
21 KOG0335 ATP-dependent RNA heli 100.0 8.2E-53 1.8E-57 444.5 29.4 381 268-673 74-469 (482)
22 PTZ00424 helicase 45; Provisio 100.0 1.5E-51 3.3E-56 451.3 40.6 362 268-661 28-389 (401)
23 KOG0336 ATP-dependent RNA heli 100.0 4.5E-53 9.8E-58 427.3 25.5 376 269-674 220-598 (629)
24 KOG0343 RNA Helicase [RNA proc 100.0 5.9E-52 1.3E-56 433.2 30.8 362 268-657 69-434 (758)
25 KOG0339 ATP-dependent RNA heli 100.0 3E-51 6.6E-56 423.8 35.3 380 265-673 220-600 (731)
26 KOG0332 ATP-dependent RNA heli 100.0 8.5E-52 1.8E-56 415.0 28.8 367 259-659 81-457 (477)
27 KOG0348 ATP-dependent RNA heli 100.0 3.1E-51 6.8E-56 426.6 34.1 382 266-656 134-564 (708)
28 KOG0347 RNA helicase [RNA proc 100.0 1.7E-52 3.6E-57 437.4 19.9 385 265-674 178-598 (731)
29 PLN03137 ATP-dependent DNA hel 100.0 4.5E-49 9.8E-54 452.7 38.9 339 273-656 442-797 (1195)
30 KOG0346 RNA helicase [RNA proc 100.0 3E-49 6.6E-54 403.7 29.1 361 268-654 19-418 (569)
31 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-47 7.1E-52 423.5 37.3 328 285-658 6-345 (470)
32 KOG0334 RNA helicase [RNA proc 100.0 2.9E-48 6.2E-53 435.6 28.9 389 244-673 353-745 (997)
33 TIGR03817 DECH_helic helicase/ 100.0 6.9E-46 1.5E-50 429.6 40.1 361 274-659 20-401 (742)
34 PRK11057 ATP-dependent DNA hel 100.0 7.8E-46 1.7E-50 423.1 38.6 334 277-657 11-354 (607)
35 COG0514 RecQ Superfamily II DN 100.0 1.5E-46 3.3E-51 410.8 30.5 332 281-658 7-349 (590)
36 KOG0327 Translation initiation 100.0 2.5E-46 5.3E-51 379.5 26.9 370 268-674 26-396 (397)
37 TIGR01389 recQ ATP-dependent D 100.0 2E-45 4.3E-50 420.7 37.8 329 282-657 4-342 (591)
38 KOG4284 DEAD box protein [Tran 100.0 1.7E-46 3.7E-51 397.5 25.1 357 268-648 25-381 (980)
39 KOG0350 DEAD-box ATP-dependent 100.0 1.5E-45 3.3E-50 382.0 28.0 369 268-665 127-559 (620)
40 KOG0353 ATP-dependent DNA heli 100.0 2.5E-46 5.4E-51 374.9 18.8 412 194-657 7-478 (695)
41 KOG0337 ATP-dependent RNA heli 100.0 3E-45 6.6E-50 372.9 19.9 362 268-661 21-383 (529)
42 KOG0344 ATP-dependent RNA heli 100.0 2.6E-43 5.6E-48 374.3 26.8 372 273-670 141-517 (593)
43 PRK02362 ski2-like helicase; P 100.0 1.6E-42 3.4E-47 405.4 35.9 354 269-655 2-408 (737)
44 PRK13767 ATP-dependent helicas 100.0 4.5E-42 9.7E-47 405.3 39.0 355 275-644 18-396 (876)
45 PRK00254 ski2-like helicase; P 100.0 1.3E-41 2.8E-46 396.7 38.5 358 269-655 2-398 (720)
46 KOG0351 ATP-dependent DNA heli 100.0 6.1E-42 1.3E-46 394.7 29.1 338 277-658 250-604 (941)
47 KOG0352 ATP-dependent DNA heli 100.0 2.7E-41 5.9E-46 343.7 21.4 336 278-656 6-372 (641)
48 PRK01172 ski2-like helicase; P 100.0 4.9E-40 1.1E-44 381.7 34.9 353 269-656 2-389 (674)
49 COG1201 Lhr Lhr-like helicases 100.0 4.2E-40 9.1E-45 372.5 33.2 345 275-645 8-361 (814)
50 TIGR00580 mfd transcription-re 100.0 2.5E-39 5.4E-44 378.3 37.6 322 276-646 437-770 (926)
51 KOG0329 ATP-dependent RNA heli 100.0 2.3E-40 4.9E-45 317.0 16.4 335 268-670 42-378 (387)
52 PRK10689 transcription-repair 100.0 2.5E-38 5.4E-43 377.3 37.0 320 278-646 588-919 (1147)
53 PRK09751 putative ATP-dependen 100.0 1.2E-37 2.5E-42 373.0 36.3 325 310-644 1-383 (1490)
54 PRK10917 ATP-dependent DNA hel 100.0 2.1E-37 4.5E-42 357.6 37.1 319 278-644 249-587 (681)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-37 3.7E-42 353.2 33.1 318 281-637 6-381 (844)
56 TIGR00643 recG ATP-dependent D 100.0 6.5E-37 1.4E-41 351.2 37.7 318 280-644 226-564 (630)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.8E-36 6.1E-41 349.4 32.5 314 294-649 6-339 (819)
58 PHA02653 RNA helicase NPH-II; 100.0 9.7E-36 2.1E-40 337.4 33.0 328 293-654 167-522 (675)
59 COG1111 MPH1 ERCC4-like helica 100.0 3.5E-35 7.6E-40 308.0 33.8 336 289-646 14-481 (542)
60 PRK11664 ATP-dependent RNA hel 100.0 8.7E-36 1.9E-40 346.1 32.0 314 294-648 9-341 (812)
61 PRK14701 reverse gyrase; Provi 100.0 1.5E-35 3.3E-40 360.9 32.3 335 278-658 67-468 (1638)
62 PRK09401 reverse gyrase; Revie 100.0 7.5E-35 1.6E-39 348.3 36.5 289 281-617 71-410 (1176)
63 COG1204 Superfamily II helicas 100.0 3.1E-34 6.7E-39 329.2 29.6 348 275-650 16-413 (766)
64 COG1202 Superfamily II helicas 100.0 1.1E-34 2.5E-39 305.1 23.6 339 268-646 194-553 (830)
65 TIGR01587 cas3_core CRISPR-ass 100.0 7.9E-34 1.7E-38 306.4 30.8 304 307-647 1-337 (358)
66 PHA02558 uvsW UvsW helicase; P 100.0 6.2E-34 1.3E-38 318.8 29.7 319 288-642 112-449 (501)
67 KOG0349 Putative DEAD-box RNA 100.0 7.1E-34 1.5E-38 289.7 20.9 310 346-663 287-632 (725)
68 KOG0952 DNA/RNA helicase MER3/ 100.0 8.2E-33 1.8E-37 308.4 29.5 354 286-656 106-501 (1230)
69 TIGR01054 rgy reverse gyrase. 100.0 2E-32 4.2E-37 328.1 34.4 292 279-617 67-409 (1171)
70 KOG0354 DEAD-box like helicase 100.0 1.8E-32 3.9E-37 303.4 29.4 339 288-647 60-530 (746)
71 COG1205 Distinct helicase fami 100.0 2.8E-32 6.1E-37 317.2 32.6 347 277-644 57-420 (851)
72 PRK13766 Hef nuclease; Provisi 100.0 4.9E-32 1.1E-36 320.3 33.8 332 289-647 14-480 (773)
73 PRK12898 secA preprotein trans 100.0 3.9E-32 8.5E-37 303.4 30.4 319 286-648 100-588 (656)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 9.8E-32 2.1E-36 288.4 32.2 299 294-630 1-357 (357)
75 PRK09200 preprotein translocas 100.0 2.4E-31 5.3E-36 303.0 31.8 320 286-648 75-543 (790)
76 PRK11131 ATP-dependent RNA hel 100.0 1.4E-31 3E-36 315.7 30.0 310 293-649 77-414 (1294)
77 TIGR03714 secA2 accessory Sec 100.0 9.8E-31 2.1E-35 295.3 31.4 317 292-648 70-539 (762)
78 TIGR00603 rad25 DNA repair hel 100.0 2.4E-31 5.2E-36 300.3 26.1 317 289-649 254-610 (732)
79 TIGR00963 secA preprotein tran 100.0 3.5E-30 7.6E-35 289.0 28.9 317 290-649 56-520 (745)
80 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.6E-30 9.9E-35 304.1 29.4 315 295-648 72-406 (1283)
81 COG1197 Mfd Transcription-repa 100.0 3.9E-28 8.4E-33 278.8 32.0 323 276-647 580-914 (1139)
82 KOG0951 RNA helicase BRR2, DEA 100.0 1.3E-28 2.9E-33 277.6 26.8 352 287-656 306-712 (1674)
83 KOG0947 Cytoplasmic exosomal R 100.0 1.7E-28 3.8E-33 270.9 27.1 335 290-656 297-735 (1248)
84 PRK05580 primosome assembly pr 100.0 1.1E-27 2.5E-32 275.7 33.3 327 290-654 144-557 (679)
85 PRK04914 ATP-dependent helicas 100.0 9.4E-28 2E-32 280.1 32.7 349 290-663 152-620 (956)
86 COG1200 RecG RecG-like helicas 100.0 2.7E-27 5.8E-32 258.9 32.5 344 275-668 247-616 (677)
87 KOG0922 DEAH-box RNA helicase 100.0 2.8E-27 6.1E-32 256.0 24.8 316 292-648 53-392 (674)
88 PRK09694 helicase Cas3; Provis 100.0 4.5E-26 9.7E-31 264.5 35.3 327 288-632 284-662 (878)
89 KOG0948 Nuclear exosomal RNA h 100.0 4.5E-28 9.7E-33 261.8 17.3 336 290-656 129-550 (1041)
90 COG1061 SSL2 DNA or RNA helica 100.0 3.5E-27 7.6E-32 259.5 24.8 308 289-637 35-381 (442)
91 cd00268 DEADc DEAD-box helicas 100.0 8.7E-27 1.9E-31 231.0 24.8 199 270-477 1-199 (203)
92 KOG0926 DEAH-box RNA helicase 100.0 1.3E-27 2.7E-32 259.6 17.3 320 296-646 262-704 (1172)
93 COG1643 HrpA HrpA-like helicas 100.0 2.1E-26 4.7E-31 263.3 27.4 317 293-649 53-390 (845)
94 TIGR00595 priA primosomal prot 99.9 6E-26 1.3E-30 252.7 30.4 299 309-648 1-383 (505)
95 COG4581 Superfamily II RNA hel 99.9 4.9E-26 1.1E-30 261.6 24.2 334 284-645 114-536 (1041)
96 KOG0923 mRNA splicing factor A 99.9 2.8E-26 6.1E-31 245.3 19.5 321 287-647 262-607 (902)
97 KOG0385 Chromatin remodeling c 99.9 1.1E-25 2.5E-30 244.4 19.8 354 290-669 167-620 (971)
98 COG4098 comFA Superfamily II D 99.9 7E-24 1.5E-28 212.3 30.2 325 290-662 97-435 (441)
99 PRK11448 hsdR type I restricti 99.9 2.9E-24 6.3E-29 256.2 30.0 330 289-642 412-812 (1123)
100 PRK13104 secA preprotein trans 99.9 6.4E-24 1.4E-28 241.8 30.3 330 290-648 82-589 (896)
101 PLN03142 Probable chromatin-re 99.9 9.3E-24 2E-28 247.4 32.4 340 290-656 169-607 (1033)
102 PRK12904 preprotein translocas 99.9 1E-23 2.2E-28 240.1 31.3 315 290-648 81-575 (830)
103 KOG0950 DNA polymerase theta/e 99.9 8.7E-25 1.9E-29 243.9 19.9 353 280-662 213-627 (1008)
104 PRK12906 secA preprotein trans 99.9 1.1E-23 2.4E-28 238.8 27.9 328 290-648 80-555 (796)
105 PRK12899 secA preprotein trans 99.9 2.4E-23 5.2E-28 236.5 29.8 148 271-433 65-228 (970)
106 KOG0924 mRNA splicing factor A 99.9 4.1E-24 9E-29 229.0 21.7 316 289-645 355-696 (1042)
107 KOG0920 ATP-dependent RNA heli 99.9 6.1E-24 1.3E-28 242.0 23.6 333 290-647 173-545 (924)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 5.1E-23 1.1E-27 197.5 19.8 163 292-466 1-166 (169)
109 PRK13107 preprotein translocas 99.9 2.6E-21 5.6E-26 219.9 27.1 330 290-648 82-593 (908)
110 KOG0384 Chromodomain-helicase 99.9 3.4E-22 7.4E-27 227.1 15.5 347 289-662 369-825 (1373)
111 COG1203 CRISPR-associated heli 99.9 4.8E-21 1E-25 223.0 25.5 329 290-647 195-551 (733)
112 KOG0925 mRNA splicing factor A 99.9 1.3E-20 2.8E-25 196.0 25.6 337 267-646 24-387 (699)
113 KOG1123 RNA polymerase II tran 99.8 1.2E-21 2.7E-26 204.0 8.7 321 289-649 301-656 (776)
114 COG1198 PriA Primosomal protei 99.8 8.7E-20 1.9E-24 206.4 24.0 331 290-658 198-615 (730)
115 COG4096 HsdR Type I site-speci 99.8 3.2E-19 6.9E-24 198.0 23.4 318 289-637 164-530 (875)
116 TIGR01407 dinG_rel DnaQ family 99.8 2.7E-18 5.8E-23 204.0 33.1 363 277-664 233-834 (850)
117 TIGR00348 hsdR type I site-spe 99.8 2E-18 4.3E-23 199.2 30.4 315 291-631 239-633 (667)
118 KOG0951 RNA helicase BRR2, DEA 99.8 1.1E-19 2.4E-24 206.1 18.6 380 230-656 1090-1504(1674)
119 KOG0949 Predicted helicase, DE 99.8 6.2E-19 1.3E-23 196.1 22.8 159 290-463 511-672 (1330)
120 KOG0387 Transcription-coupled 99.8 1.7E-18 3.8E-23 189.9 24.8 334 273-642 196-652 (923)
121 COG1110 Reverse gyrase [DNA re 99.8 1.2E-17 2.5E-22 188.1 29.0 289 281-616 73-416 (1187)
122 TIGR00631 uvrb excinuclease AB 99.8 2.6E-17 5.5E-22 188.1 30.0 130 516-656 427-563 (655)
123 KOG0389 SNF2 family DNA-depend 99.8 2.7E-18 5.7E-23 188.2 17.9 341 290-658 399-898 (941)
124 PRK12900 secA preprotein trans 99.8 8.6E-18 1.9E-22 192.0 21.9 123 515-649 582-714 (1025)
125 PRK05298 excinuclease ABC subu 99.8 7.6E-17 1.7E-21 185.4 29.4 136 516-662 431-582 (652)
126 smart00487 DEXDc DEAD-like hel 99.8 2.9E-17 6.3E-22 160.4 21.2 180 286-477 4-185 (201)
127 KOG4150 Predicted ATP-dependen 99.8 1.7E-17 3.6E-22 175.3 19.2 342 283-644 279-638 (1034)
128 PRK12326 preprotein translocas 99.8 2.5E-16 5.3E-21 175.7 28.7 313 290-648 78-549 (764)
129 PRK07246 bifunctional ATP-depe 99.8 7.3E-16 1.6E-20 181.0 32.4 345 290-669 245-808 (820)
130 COG0556 UvrB Helicase subunit 99.7 2E-15 4.4E-20 159.9 27.9 108 528-646 445-557 (663)
131 KOG0392 SNF2 family DNA-depend 99.7 5E-16 1.1E-20 176.7 24.5 348 290-656 975-1462(1549)
132 KOG0390 DNA repair protein, SN 99.7 1.4E-15 2.9E-20 171.6 26.7 336 290-644 238-703 (776)
133 PRK13103 secA preprotein trans 99.7 1.4E-15 3.1E-20 173.5 25.7 126 290-432 82-214 (913)
134 KOG0386 Chromatin remodeling c 99.7 3.1E-16 6.6E-21 176.0 14.4 346 289-659 393-849 (1157)
135 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.2E-13 2.5E-18 155.9 34.2 129 516-656 458-627 (636)
136 cd00079 HELICc Helicase superf 99.7 5.7E-16 1.2E-20 141.6 12.9 118 515-642 12-131 (131)
137 KOG1000 Chromatin remodeling p 99.7 4.6E-15 9.9E-20 155.4 19.7 323 291-644 199-599 (689)
138 COG4889 Predicted helicase [Ge 99.7 4.5E-16 9.7E-21 171.4 12.7 339 286-642 157-582 (1518)
139 KOG0953 Mitochondrial RNA heli 99.6 3.1E-15 6.7E-20 158.9 16.9 280 307-656 193-486 (700)
140 PRK08074 bifunctional ATP-depe 99.6 1E-13 2.2E-18 165.8 32.0 134 519-660 743-909 (928)
141 PRK12903 secA preprotein trans 99.6 4.1E-14 8.9E-19 160.1 25.4 312 290-647 78-540 (925)
142 cd00046 DEXDc DEAD-like helica 99.6 9.6E-15 2.1E-19 134.1 16.6 144 306-462 1-144 (144)
143 KOG0388 SNF2 family DNA-depend 99.6 1.5E-15 3.3E-20 164.1 10.7 126 529-663 1044-1169(1185)
144 PF00271 Helicase_C: Helicase 99.6 2.1E-15 4.6E-20 125.3 9.0 69 559-631 8-76 (78)
145 PF06862 DUF1253: Protein of u 99.6 7.9E-13 1.7E-17 142.3 29.9 301 344-655 36-424 (442)
146 KOG0391 SNF2 family DNA-depend 99.6 4.5E-14 9.7E-19 159.4 18.9 132 529-668 1276-1407(1958)
147 COG1199 DinG Rad3-related DNA 99.6 6.8E-13 1.5E-17 154.6 28.6 122 515-648 466-620 (654)
148 CHL00122 secA preprotein trans 99.6 3.8E-13 8.2E-18 153.3 24.7 129 286-432 73-208 (870)
149 PF04851 ResIII: Type III rest 99.6 1.8E-14 3.8E-19 139.7 12.2 153 290-463 3-183 (184)
150 KOG2340 Uncharacterized conser 99.5 3.2E-13 7E-18 142.8 18.7 356 287-654 213-676 (698)
151 PRK14873 primosome assembly pr 99.5 1.6E-12 3.4E-17 148.6 19.5 288 314-647 169-540 (665)
152 PRK11747 dinG ATP-dependent DN 99.5 7.7E-11 1.7E-15 137.0 33.5 130 516-659 523-689 (697)
153 PRK12902 secA preprotein trans 99.5 8.9E-12 1.9E-16 142.0 24.3 126 290-432 85-217 (939)
154 TIGR02562 cas3_yersinia CRISPR 99.5 9.2E-12 2E-16 143.8 24.5 326 290-631 408-878 (1110)
155 smart00490 HELICc helicase sup 99.4 7.5E-13 1.6E-17 110.3 9.0 79 544-631 2-80 (82)
156 KOG1002 Nucleotide excision re 99.4 5.7E-11 1.2E-15 124.8 24.7 112 529-647 638-750 (791)
157 TIGR00604 rad3 DNA repair heli 99.4 3.4E-10 7.3E-15 132.6 30.9 73 287-368 7-83 (705)
158 KOG4439 RNA polymerase II tran 99.3 1.3E-10 2.8E-15 126.9 21.2 107 529-642 746-852 (901)
159 PRK12901 secA preprotein trans 99.3 1.8E-10 4E-15 132.7 19.7 122 515-648 612-743 (1112)
160 COG0553 HepA Superfamily II DN 99.2 4.8E-10 1E-14 135.2 22.9 134 515-656 692-830 (866)
161 KOG0921 Dosage compensation co 99.2 6.4E-11 1.4E-15 132.0 12.9 348 294-667 382-795 (1282)
162 KOG1015 Transcription regulato 99.2 3.5E-10 7.5E-15 126.5 18.4 128 516-644 1127-1273(1567)
163 PF02399 Herpes_ori_bp: Origin 99.2 1.3E-09 2.8E-14 123.4 21.3 301 306-646 50-388 (824)
164 PF07652 Flavi_DEAD: Flaviviru 99.1 2.5E-10 5.4E-15 103.8 9.6 136 305-466 4-140 (148)
165 KOG0952 DNA/RNA helicase MER3/ 99.1 1.6E-11 3.5E-16 139.2 2.2 290 231-552 875-1176(1230)
166 PF00176 SNF2_N: SNF2 family N 99.0 1.9E-09 4.1E-14 113.1 11.3 158 294-464 1-174 (299)
167 COG0610 Type I site-specific r 99.0 7E-08 1.5E-12 115.5 24.2 138 306-463 274-414 (962)
168 smart00489 DEXDc3 DEAD-like he 98.9 2.2E-08 4.8E-13 104.5 14.2 73 290-368 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 98.9 2.2E-08 4.8E-13 104.5 14.2 73 290-368 8-84 (289)
170 COG0653 SecA Preprotein transl 98.7 1.7E-07 3.7E-12 107.1 15.3 328 293-647 81-546 (822)
171 PF07517 SecA_DEAD: SecA DEAD- 98.6 4.6E-07 9.9E-12 92.5 14.2 128 289-433 76-210 (266)
172 KOG1016 Predicted DNA helicase 98.5 2E-05 4.2E-10 87.7 21.2 130 530-661 720-862 (1387)
173 PRK15483 type III restriction- 98.4 3.8E-06 8.2E-11 98.4 14.0 72 588-659 501-581 (986)
174 TIGR00596 rad1 DNA repair prot 98.2 1E-05 2.3E-10 94.7 13.2 67 395-462 6-72 (814)
175 PF02562 PhoH: PhoH-like prote 98.2 5.5E-06 1.2E-10 81.3 9.1 147 289-461 3-155 (205)
176 COG3587 Restriction endonuclea 98.2 0.00022 4.7E-09 81.1 22.0 70 588-657 483-564 (985)
177 PF13604 AAA_30: AAA domain; P 98.0 2.4E-05 5.2E-10 77.0 9.3 122 291-461 2-130 (196)
178 PF13307 Helicase_C_2: Helicas 98.0 2.1E-05 4.5E-10 75.4 8.0 112 521-642 2-147 (167)
179 PF13872 AAA_34: P-loop contai 97.9 0.00016 3.5E-09 74.3 12.8 158 291-466 38-224 (303)
180 PRK10536 hypothetical protein; 97.8 0.00036 7.8E-09 70.6 13.9 142 287-459 56-210 (262)
181 KOG1802 RNA helicase nonsense 97.7 0.00012 2.7E-09 80.6 9.0 73 285-368 405-477 (935)
182 KOG1803 DNA helicase [Replicat 97.5 0.00025 5.5E-09 78.0 8.6 65 290-366 185-250 (649)
183 PF12340 DUF3638: Protein of u 97.5 0.0016 3.5E-08 64.6 12.8 132 290-433 23-185 (229)
184 PRK10875 recD exonuclease V su 97.5 0.00081 1.8E-08 77.1 12.2 142 292-461 154-301 (615)
185 KOG1001 Helicase-like transcri 97.5 0.00027 5.9E-09 81.3 8.2 103 531-641 541-643 (674)
186 PF09848 DUF2075: Uncharacteri 97.5 0.00039 8.4E-09 75.0 9.0 109 307-448 3-117 (352)
187 TIGR01448 recD_rel helicase, p 97.5 0.0013 2.7E-08 77.4 13.8 126 289-461 322-452 (720)
188 TIGR00376 DNA helicase, putati 97.5 0.00085 1.8E-08 77.7 12.2 66 290-367 157-223 (637)
189 TIGR01447 recD exodeoxyribonuc 97.4 0.0023 5E-08 73.2 14.2 141 293-460 148-294 (586)
190 PF13245 AAA_19: Part of AAA d 97.3 0.00078 1.7E-08 55.3 7.3 53 305-365 10-62 (76)
191 COG1875 NYN ribonuclease and A 97.3 0.0018 4E-08 67.5 11.5 144 286-459 224-385 (436)
192 PRK12723 flagellar biosynthesi 97.3 0.0055 1.2E-07 66.4 15.0 133 305-474 174-309 (388)
193 KOG0383 Predicted helicase [Ge 97.3 3.1E-05 6.6E-10 87.9 -2.5 79 516-601 616-696 (696)
194 KOG1132 Helicase of the DEAD s 97.3 0.002 4.2E-08 73.9 11.7 79 290-368 21-133 (945)
195 PF13086 AAA_11: AAA domain; P 97.2 0.00088 1.9E-08 67.1 7.3 73 291-367 2-75 (236)
196 PF13401 AAA_22: AAA domain; P 97.1 0.0017 3.7E-08 58.9 7.7 22 305-326 4-25 (131)
197 PRK05703 flhF flagellar biosyn 97.1 0.015 3.3E-07 64.0 16.1 131 305-474 221-354 (424)
198 PRK13889 conjugal transfer rel 97.0 0.0065 1.4E-07 73.0 13.2 123 290-461 346-470 (988)
199 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0075 1.6E-07 71.3 13.2 122 289-459 351-474 (744)
200 PF00448 SRP54: SRP54-type pro 96.9 0.007 1.5E-07 59.5 10.4 56 418-473 81-136 (196)
201 PF00580 UvrD-helicase: UvrD/R 96.9 0.0019 4.2E-08 67.9 6.9 123 291-430 1-125 (315)
202 PRK08181 transposase; Validate 96.9 0.012 2.6E-07 60.7 12.4 23 301-323 102-124 (269)
203 PRK11889 flhF flagellar biosyn 96.9 0.019 4.1E-07 61.7 14.0 129 306-474 242-374 (436)
204 PRK06526 transposase; Provisio 96.9 0.0031 6.7E-08 64.6 8.0 27 298-324 91-117 (254)
205 PF14617 CMS1: U3-containing 9 96.9 0.0028 6E-08 64.2 7.4 86 343-430 124-211 (252)
206 PRK14722 flhF flagellar biosyn 96.9 0.014 2.9E-07 62.9 13.0 129 305-472 137-267 (374)
207 COG3421 Uncharacterized protei 96.9 0.0054 1.2E-07 67.6 9.9 143 310-464 2-167 (812)
208 PF05970 PIF1: PIF1-like helic 96.7 0.0079 1.7E-07 65.1 10.2 59 291-361 2-66 (364)
209 COG1419 FlhF Flagellar GTP-bin 96.7 0.057 1.2E-06 58.0 16.2 132 305-474 203-335 (407)
210 PRK04296 thymidine kinase; Pro 96.7 0.0033 7.2E-08 61.5 6.3 35 307-353 4-38 (190)
211 smart00492 HELICc3 helicase su 96.6 0.013 2.8E-07 54.4 9.2 51 564-617 27-79 (141)
212 cd00009 AAA The AAA+ (ATPases 96.6 0.023 5E-07 51.7 10.9 18 305-322 19-36 (151)
213 PRK13826 Dtr system oriT relax 96.5 0.039 8.3E-07 67.0 14.9 124 289-461 380-505 (1102)
214 PRK14974 cell division protein 96.4 0.043 9.4E-07 58.4 13.3 54 419-472 221-274 (336)
215 smart00491 HELICc2 helicase su 96.3 0.016 3.4E-07 53.9 8.1 70 571-641 31-135 (142)
216 PRK08084 DNA replication initi 96.2 0.038 8.3E-07 56.0 11.2 44 421-465 98-143 (235)
217 PRK05642 DNA replication initi 96.2 0.02 4.3E-07 58.0 8.6 46 420-465 97-142 (234)
218 TIGR02760 TraI_TIGR conjugativ 96.1 0.57 1.2E-05 61.2 22.8 241 290-584 429-686 (1960)
219 KOG1131 RNA polymerase II tran 96.0 0.087 1.9E-06 57.4 12.8 73 288-368 14-90 (755)
220 smart00382 AAA ATPases associa 96.0 0.021 4.5E-07 51.5 7.2 20 305-324 2-21 (148)
221 PRK06731 flhF flagellar biosyn 96.0 0.19 4E-06 51.9 14.8 131 304-474 74-208 (270)
222 PRK06893 DNA replication initi 95.9 0.025 5.5E-07 57.1 8.1 49 419-467 90-139 (229)
223 PHA02533 17 large terminase pr 95.9 0.066 1.4E-06 60.7 12.2 152 290-462 59-210 (534)
224 PRK06835 DNA replication prote 95.9 0.067 1.5E-06 56.9 11.5 19 305-323 183-201 (329)
225 PRK00149 dnaA chromosomal repl 95.9 0.14 3E-06 57.3 14.5 17 306-322 149-165 (450)
226 KOG1805 DNA replication helica 95.9 0.027 5.9E-07 65.5 8.8 128 290-433 669-809 (1100)
227 PRK12727 flagellar biosynthesi 95.8 0.24 5.2E-06 55.5 15.6 64 404-472 416-479 (559)
228 PRK06921 hypothetical protein; 95.8 0.1 2.2E-06 53.9 12.0 18 305-322 117-134 (266)
229 PRK08727 hypothetical protein; 95.8 0.058 1.3E-06 54.6 10.0 17 306-322 42-58 (233)
230 PRK14723 flhF flagellar biosyn 95.7 0.13 2.7E-06 60.2 13.4 69 402-474 249-317 (767)
231 KOG0989 Replication factor C, 95.7 0.025 5.5E-07 58.0 6.8 46 415-462 124-169 (346)
232 PRK11054 helD DNA helicase IV; 95.7 0.076 1.7E-06 62.1 11.5 74 286-369 192-265 (684)
233 PRK12726 flagellar biosynthesi 95.6 0.14 3E-06 55.0 12.3 127 305-470 206-335 (407)
234 PF03354 Terminase_1: Phage Te 95.6 0.049 1.1E-06 61.3 9.4 149 293-459 1-160 (477)
235 PRK14087 dnaA chromosomal repl 95.5 0.13 2.8E-06 57.3 12.2 48 418-466 204-252 (450)
236 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.12 2.6E-06 51.7 10.7 21 304-324 37-57 (226)
237 TIGR00362 DnaA chromosomal rep 95.4 0.3 6.6E-06 53.7 14.7 25 306-331 137-161 (405)
238 PRK14712 conjugal transfer nic 95.3 0.11 2.3E-06 65.3 11.8 62 290-361 835-900 (1623)
239 PRK14721 flhF flagellar biosyn 95.2 0.27 5.9E-06 53.9 13.3 133 304-474 190-323 (420)
240 PRK07952 DNA replication prote 95.2 0.32 6.9E-06 49.5 13.0 47 418-465 160-208 (244)
241 PRK12724 flagellar biosynthesi 95.2 0.42 9E-06 52.2 14.4 56 419-474 298-356 (432)
242 KOG0298 DEAD box-containing he 95.2 0.038 8.2E-07 66.0 6.9 155 304-465 373-553 (1394)
243 PF01695 IstB_IS21: IstB-like 95.1 0.024 5.2E-07 54.8 4.3 27 299-325 41-67 (178)
244 PF13871 Helicase_C_4: Helicas 95.1 0.063 1.4E-06 55.2 7.5 67 574-645 51-126 (278)
245 PRK07764 DNA polymerase III su 95.0 0.14 3E-06 61.0 10.9 51 418-471 118-168 (824)
246 PF05127 Helicase_RecD: Helica 95.0 0.011 2.4E-07 56.7 1.5 123 309-462 1-123 (177)
247 cd01124 KaiC KaiC is a circadi 94.9 0.092 2E-06 50.7 7.9 48 308-368 2-49 (187)
248 COG1484 DnaC DNA replication p 94.9 0.17 3.6E-06 51.9 10.0 50 304-366 104-153 (254)
249 PRK12422 chromosomal replicati 94.9 0.13 2.9E-06 57.0 9.9 48 419-466 201-249 (445)
250 PF06745 KaiC: KaiC; InterPro 94.9 0.12 2.7E-06 51.8 8.9 134 304-461 18-159 (226)
251 PRK09183 transposase/IS protei 94.8 0.22 4.8E-06 51.2 10.8 25 300-324 97-121 (259)
252 PRK14086 dnaA chromosomal repl 94.8 0.4 8.6E-06 54.8 13.4 48 418-465 375-423 (617)
253 cd01120 RecA-like_NTPases RecA 94.8 0.24 5.2E-06 46.1 10.2 38 308-357 2-39 (165)
254 PF00308 Bac_DnaA: Bacterial d 94.8 0.15 3.2E-06 51.1 9.0 48 418-465 95-143 (219)
255 cd01122 GP4d_helicase GP4d_hel 94.7 0.2 4.4E-06 51.7 10.2 54 301-366 26-79 (271)
256 PRK14088 dnaA chromosomal repl 94.6 0.33 7.1E-06 54.0 12.3 38 306-353 131-168 (440)
257 PRK12377 putative replication 94.6 0.59 1.3E-05 47.7 13.1 26 305-331 101-126 (248)
258 PRK05707 DNA polymerase III su 94.5 0.13 2.9E-06 54.7 8.6 36 291-326 4-43 (328)
259 PF05621 TniB: Bacterial TniB 94.5 0.18 3.9E-06 52.4 9.0 55 306-365 62-116 (302)
260 PRK00771 signal recognition pa 94.5 0.33 7.2E-06 53.6 11.6 52 421-472 176-227 (437)
261 PRK10919 ATP-dependent DNA hel 94.4 0.083 1.8E-06 62.0 7.3 70 290-369 2-71 (672)
262 PRK13709 conjugal transfer nic 94.4 0.29 6.3E-06 62.4 12.3 65 289-361 966-1032(1747)
263 PRK08116 hypothetical protein; 94.4 0.5 1.1E-05 48.8 12.2 26 306-332 115-140 (268)
264 PHA03333 putative ATPase subun 94.4 0.84 1.8E-05 52.4 14.5 152 290-463 169-333 (752)
265 TIGR00064 ftsY signal recognit 94.3 0.63 1.4E-05 48.2 12.7 55 419-473 153-213 (272)
266 PRK14964 DNA polymerase III su 94.2 0.63 1.4E-05 52.1 13.3 47 418-467 114-160 (491)
267 PLN03025 replication factor C 94.1 0.4 8.6E-06 50.9 11.2 45 419-466 98-142 (319)
268 PRK14958 DNA polymerase III su 94.1 0.28 6.1E-06 55.4 10.4 39 419-459 118-156 (509)
269 PF13173 AAA_14: AAA domain 94.1 0.42 9.1E-06 43.3 9.8 42 420-466 61-102 (128)
270 PRK07003 DNA polymerase III su 94.1 0.31 6.6E-06 56.7 10.5 39 419-459 118-156 (830)
271 PTZ00112 origin recognition co 94.0 0.9 1.9E-05 53.6 14.0 24 308-332 784-807 (1164)
272 PRK14956 DNA polymerase III su 93.9 0.22 4.7E-06 55.3 8.8 20 307-326 42-61 (484)
273 PRK08769 DNA polymerase III su 93.9 0.31 6.7E-06 51.6 9.5 42 418-461 111-152 (319)
274 COG2256 MGS1 ATPase related to 93.8 0.15 3.3E-06 54.4 7.0 19 306-324 49-67 (436)
275 TIGR01074 rep ATP-dependent DN 93.8 0.2 4.3E-06 58.9 8.9 69 291-369 2-70 (664)
276 PRK14952 DNA polymerase III su 93.8 0.34 7.4E-06 55.5 10.4 45 418-465 116-160 (584)
277 KOG0991 Replication factor C, 93.8 0.14 3E-06 50.6 6.1 43 417-461 110-152 (333)
278 PRK10867 signal recognition pa 93.8 0.98 2.1E-05 49.9 13.5 21 307-327 102-122 (433)
279 TIGR02760 TraI_TIGR conjugativ 93.7 0.36 7.7E-06 63.0 11.4 62 289-361 1018-1084(1960)
280 PRK14949 DNA polymerase III su 93.7 0.35 7.7E-06 57.3 10.3 46 419-467 118-163 (944)
281 TIGR01075 uvrD DNA helicase II 93.6 0.13 2.8E-06 60.9 6.9 72 289-370 3-74 (715)
282 PRK06645 DNA polymerase III su 93.6 0.91 2E-05 51.2 13.1 21 306-326 44-64 (507)
283 PF05876 Terminase_GpA: Phage 93.5 0.1 2.2E-06 59.6 5.5 126 290-434 16-148 (557)
284 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.65 1.4E-05 46.6 10.8 52 304-368 19-70 (229)
285 TIGR01425 SRP54_euk signal rec 93.4 0.87 1.9E-05 50.0 12.3 52 419-470 181-232 (429)
286 TIGR03499 FlhF flagellar biosy 93.4 0.57 1.2E-05 48.8 10.4 23 305-327 194-216 (282)
287 PHA02544 44 clamp loader, smal 93.3 0.3 6.6E-06 51.6 8.5 49 420-470 100-148 (316)
288 PRK06995 flhF flagellar biosyn 93.3 1.4 3.1E-05 49.2 13.9 58 417-474 331-388 (484)
289 PRK11773 uvrD DNA-dependent he 93.3 0.16 3.5E-06 60.2 6.9 71 290-370 9-79 (721)
290 PRK12402 replication factor C 93.3 0.62 1.3E-05 49.6 10.9 39 419-459 124-162 (337)
291 PF13177 DNA_pol3_delta2: DNA 93.2 0.43 9.4E-06 45.3 8.6 41 419-461 101-141 (162)
292 PRK08691 DNA polymerase III su 93.1 0.35 7.6E-06 55.9 9.1 40 418-459 117-156 (709)
293 TIGR02785 addA_Gpos recombinat 93.1 0.31 6.7E-06 61.2 9.4 123 291-431 2-126 (1232)
294 PRK00411 cdc6 cell division co 93.1 0.92 2E-05 49.6 12.1 17 306-322 56-72 (394)
295 PRK12323 DNA polymerase III su 93.0 0.26 5.6E-06 56.5 7.7 41 418-460 122-162 (700)
296 PRK14960 DNA polymerase III su 93.0 0.21 4.6E-06 57.3 7.0 39 419-459 117-155 (702)
297 PRK07994 DNA polymerase III su 93.0 0.9 2E-05 52.6 12.1 39 418-458 117-155 (647)
298 TIGR03877 thermo_KaiC_1 KaiC d 93.0 0.81 1.8E-05 46.3 10.7 53 304-369 20-72 (237)
299 COG1110 Reverse gyrase [DNA re 93.0 0.36 7.9E-06 57.0 8.8 80 516-599 112-192 (1187)
300 PRK11331 5-methylcytosine-spec 93.0 0.36 7.8E-06 53.1 8.4 31 293-323 182-212 (459)
301 PF00004 AAA: ATPase family as 92.9 0.91 2E-05 40.6 10.0 16 308-323 1-16 (132)
302 PRK08903 DnaA regulatory inact 92.9 0.57 1.2E-05 47.0 9.4 19 304-322 41-59 (227)
303 COG1444 Predicted P-loop ATPas 92.8 1.4 3E-05 51.4 13.2 146 284-462 208-356 (758)
304 PRK10416 signal recognition pa 92.8 3.4 7.5E-05 43.8 15.4 55 419-473 195-255 (318)
305 PRK13342 recombination factor 92.8 0.5 1.1E-05 52.1 9.5 19 306-324 37-55 (413)
306 TIGR02881 spore_V_K stage V sp 92.6 0.71 1.5E-05 47.5 9.8 19 306-324 43-61 (261)
307 PRK13341 recombination factor 92.6 0.56 1.2E-05 55.2 10.0 19 306-324 53-71 (725)
308 cd03115 SRP The signal recogni 92.5 2.1 4.7E-05 40.7 12.4 55 419-473 81-135 (173)
309 KOG1133 Helicase of the DEAD s 92.5 0.17 3.8E-06 57.1 5.2 44 290-333 15-62 (821)
310 COG3973 Superfamily I DNA and 92.4 0.63 1.4E-05 52.2 9.3 94 272-371 186-286 (747)
311 PRK10917 ATP-dependent DNA hel 92.4 0.62 1.3E-05 54.9 10.0 80 528-612 309-389 (681)
312 TIGR00959 ffh signal recogniti 92.3 2.1 4.6E-05 47.2 13.4 22 307-328 101-122 (428)
313 PRK14951 DNA polymerase III su 92.2 0.71 1.5E-05 53.2 10.0 46 418-466 122-167 (618)
314 COG2805 PilT Tfp pilus assembl 92.2 0.42 9.1E-06 49.3 7.1 47 268-333 106-152 (353)
315 PHA03368 DNA packaging termina 92.1 1.4 3E-05 50.5 11.7 136 303-462 252-390 (738)
316 cd00984 DnaB_C DnaB helicase C 92.0 0.88 1.9E-05 46.0 9.6 40 303-353 11-50 (242)
317 KOG2028 ATPase related to the 92.0 0.51 1.1E-05 49.7 7.6 19 306-324 163-181 (554)
318 PRK06871 DNA polymerase III su 91.9 0.7 1.5E-05 49.0 8.9 41 418-460 105-145 (325)
319 COG1435 Tdk Thymidine kinase [ 91.9 0.39 8.6E-06 46.4 6.3 104 307-449 6-109 (201)
320 PRK04195 replication factor C 91.9 0.91 2E-05 51.2 10.3 44 268-323 11-57 (482)
321 PRK09111 DNA polymerase III su 91.9 0.61 1.3E-05 53.7 9.0 40 418-459 130-169 (598)
322 TIGR01073 pcrA ATP-dependent D 91.8 0.33 7.2E-06 57.7 7.0 70 290-369 4-73 (726)
323 PRK14961 DNA polymerase III su 91.7 1 2.3E-05 48.7 10.2 40 418-459 117-156 (363)
324 PRK13894 conjugal transfer ATP 91.6 0.45 9.8E-06 50.4 7.0 65 281-357 125-190 (319)
325 COG0593 DnaA ATPase involved i 91.5 0.9 2E-05 49.4 9.2 48 420-467 175-223 (408)
326 PRK11823 DNA repair protein Ra 91.5 0.64 1.4E-05 51.8 8.4 53 304-369 79-131 (446)
327 TIGR03015 pepcterm_ATPase puta 91.5 1.3 2.8E-05 45.5 10.2 31 293-323 26-61 (269)
328 PRK05973 replicative DNA helic 91.4 1.6 3.5E-05 44.1 10.4 59 298-369 57-115 (237)
329 PRK13833 conjugal transfer pro 91.3 0.56 1.2E-05 49.7 7.3 58 291-358 129-187 (323)
330 PRK08699 DNA polymerase III su 91.2 0.75 1.6E-05 48.9 8.3 35 292-326 3-42 (325)
331 TIGR02928 orc1/cdc6 family rep 91.2 0.84 1.8E-05 49.3 8.9 25 306-331 41-65 (365)
332 COG1474 CDC6 Cdc6-related prot 91.1 3.2 6.9E-05 44.9 13.0 26 306-332 43-68 (366)
333 KOG0701 dsRNA-specific nucleas 91.1 0.19 4.1E-06 62.6 4.0 93 531-631 294-397 (1606)
334 TIGR01547 phage_term_2 phage t 91.0 0.73 1.6E-05 50.5 8.3 138 307-464 3-142 (396)
335 COG0470 HolB ATPase involved i 91.0 0.9 2E-05 48.0 8.8 41 418-460 107-147 (325)
336 PRK14965 DNA polymerase III su 91.0 1.7 3.8E-05 50.0 11.5 47 418-467 117-163 (576)
337 PRK09112 DNA polymerase III su 90.9 1.7 3.6E-05 46.8 10.6 41 418-460 139-179 (351)
338 PRK05580 primosome assembly pr 90.8 1.4 3E-05 51.9 10.7 76 529-613 190-265 (679)
339 PRK14957 DNA polymerase III su 90.8 1.1 2.5E-05 50.8 9.7 40 418-459 117-156 (546)
340 PRK14969 DNA polymerase III su 90.8 0.8 1.7E-05 52.1 8.5 40 418-459 117-156 (527)
341 PRK05563 DNA polymerase III su 90.8 1.7 3.7E-05 49.8 11.2 20 307-326 40-59 (559)
342 TIGR03878 thermo_KaiC_2 KaiC d 90.8 1.4 3.1E-05 45.2 9.6 37 304-352 35-71 (259)
343 PHA00729 NTP-binding motif con 90.7 1.8 3.9E-05 43.3 9.9 18 306-323 18-35 (226)
344 PRK06964 DNA polymerase III su 90.7 1.1 2.5E-05 47.8 9.0 35 292-326 3-42 (342)
345 COG4962 CpaF Flp pilus assembl 90.7 0.71 1.5E-05 48.6 7.2 62 287-361 154-216 (355)
346 PRK08533 flagellar accessory p 90.6 2.3 5E-05 42.9 10.8 53 303-368 22-74 (230)
347 PRK14963 DNA polymerase III su 90.6 1.1 2.3E-05 50.7 9.2 17 308-324 39-55 (504)
348 PTZ00293 thymidine kinase; Pro 90.6 0.94 2E-05 44.8 7.6 38 305-354 4-41 (211)
349 PRK07471 DNA polymerase III su 90.5 1.4 3.1E-05 47.6 9.8 43 418-462 139-181 (365)
350 KOG0738 AAA+-type ATPase [Post 90.5 1.5 3.2E-05 46.9 9.2 45 3-49 5-49 (491)
351 TIGR00595 priA primosomal prot 90.4 1.5 3.3E-05 49.6 10.3 75 529-612 25-99 (505)
352 PRK14873 primosome assembly pr 90.3 1.9 4.1E-05 50.4 11.0 90 515-612 172-263 (665)
353 PRK00440 rfc replication facto 90.2 2.6 5.6E-05 44.4 11.3 39 419-459 101-139 (319)
354 PRK14959 DNA polymerase III su 90.2 0.86 1.9E-05 52.4 7.9 22 306-327 39-60 (624)
355 TIGR00643 recG ATP-dependent D 90.2 0.96 2.1E-05 52.8 8.6 79 529-612 284-363 (630)
356 TIGR03600 phage_DnaB phage rep 90.0 3 6.6E-05 46.1 12.1 117 302-433 191-318 (421)
357 PF05729 NACHT: NACHT domain 89.9 2.5 5.3E-05 39.4 9.8 40 423-462 84-130 (166)
358 PRK05986 cob(I)alamin adenolsy 89.9 1.6 3.4E-05 42.5 8.4 143 303-469 20-165 (191)
359 PRK06090 DNA polymerase III su 89.9 1.4 3.1E-05 46.6 8.9 47 418-467 106-152 (319)
360 CHL00181 cbbX CbbX; Provisiona 89.9 1.6 3.6E-05 45.5 9.2 21 305-325 59-79 (287)
361 PRK14962 DNA polymerase III su 89.7 1.2 2.6E-05 49.9 8.6 19 307-325 38-56 (472)
362 PRK08939 primosomal protein Dn 89.7 2.8 6.1E-05 44.2 10.9 19 305-323 156-174 (306)
363 PRK06904 replicative DNA helic 89.6 4.6 9.9E-05 45.4 13.0 118 302-433 218-347 (472)
364 TIGR02782 TrbB_P P-type conjug 89.5 0.8 1.7E-05 48.2 6.6 58 291-358 117-175 (299)
365 cd00561 CobA_CobO_BtuR ATP:cor 89.5 6.5 0.00014 37.2 12.0 54 416-469 91-145 (159)
366 COG0513 SrmB Superfamily II DN 89.2 1.6 3.5E-05 49.6 9.2 73 532-612 102-180 (513)
367 PF03796 DnaB_C: DnaB-like hel 89.0 2.4 5.2E-05 43.4 9.7 112 304-434 18-144 (259)
368 TIGR02880 cbbX_cfxQ probable R 89.0 2.2 4.8E-05 44.5 9.5 20 305-324 58-77 (284)
369 PRK07993 DNA polymerase III su 89.0 1.2 2.7E-05 47.5 7.7 36 291-326 3-45 (334)
370 PRK04328 hypothetical protein; 88.9 1.4 3E-05 45.1 7.7 53 304-369 22-74 (249)
371 TIGR00602 rad24 checkpoint pro 88.9 3 6.4E-05 48.4 11.1 46 268-324 81-129 (637)
372 TIGR00678 holB DNA polymerase 88.9 2.8 6E-05 40.6 9.6 40 418-459 94-133 (188)
373 TIGR02655 circ_KaiC circadian 88.9 2.2 4.8E-05 48.1 10.0 53 304-369 262-314 (484)
374 COG1219 ClpX ATP-dependent pro 88.8 0.3 6.4E-06 50.6 2.6 21 304-324 96-116 (408)
375 COG4626 Phage terminase-like p 88.7 2 4.3E-05 48.1 9.1 147 290-460 61-223 (546)
376 cd01121 Sms Sms (bacterial rad 88.7 1.1 2.4E-05 48.6 7.1 53 304-369 81-133 (372)
377 TIGR00580 mfd transcription-re 88.7 2.2 4.7E-05 51.8 10.2 79 529-612 500-579 (926)
378 PF05496 RuvB_N: Holliday junc 88.6 1.1 2.3E-05 44.8 6.3 19 306-324 51-69 (233)
379 PRK05896 DNA polymerase III su 88.5 1.7 3.6E-05 49.8 8.7 46 419-467 118-163 (605)
380 PRK14950 DNA polymerase III su 88.5 2.3 4.9E-05 49.2 10.0 19 307-325 40-58 (585)
381 PRK06067 flagellar accessory p 88.4 3.1 6.7E-05 41.9 9.9 52 305-369 25-76 (234)
382 PRK07133 DNA polymerase III su 88.4 2.5 5.5E-05 49.5 10.1 47 418-467 116-162 (725)
383 TIGR00708 cobA cob(I)alamin ad 88.3 2.2 4.8E-05 40.9 8.1 53 417-469 94-147 (173)
384 PRK08451 DNA polymerase III su 88.3 2.4 5.2E-05 48.1 9.7 40 418-459 115-154 (535)
385 PRK07940 DNA polymerase III su 88.3 3.3 7.2E-05 45.3 10.6 51 418-471 115-165 (394)
386 PRK14954 DNA polymerase III su 88.1 3.1 6.7E-05 48.2 10.6 40 418-459 125-164 (620)
387 TIGR02525 plasmid_TraJ plasmid 87.9 1.1 2.5E-05 48.4 6.6 26 305-331 149-174 (372)
388 PRK14955 DNA polymerase III su 87.7 1.7 3.7E-05 47.7 8.0 20 307-326 40-59 (397)
389 TIGR03689 pup_AAA proteasome A 87.7 2.5 5.4E-05 47.6 9.3 18 305-322 216-233 (512)
390 KOG1133 Helicase of the DEAD s 87.6 8.1 0.00018 44.3 12.9 92 522-617 623-720 (821)
391 PRK08840 replicative DNA helic 87.4 6.8 0.00015 43.9 12.6 120 299-433 211-342 (464)
392 cd01125 repA Hexameric Replica 87.3 4.9 0.00011 40.6 10.5 46 307-352 3-48 (239)
393 TIGR02524 dot_icm_DotB Dot/Icm 87.2 1.1 2.5E-05 48.2 6.1 26 304-330 133-158 (358)
394 COG2804 PulE Type II secretory 87.1 0.84 1.8E-05 50.5 5.0 40 292-332 243-284 (500)
395 PRK13851 type IV secretion sys 87.0 0.8 1.7E-05 49.0 4.7 44 302-358 159-202 (344)
396 PRK07004 replicative DNA helic 86.9 3.5 7.5E-05 46.2 9.9 113 303-433 211-337 (460)
397 TIGR00767 rho transcription te 86.8 2.3 5E-05 46.2 8.0 21 303-323 166-186 (415)
398 PF03237 Terminase_6: Terminas 86.5 9.8 0.00021 40.5 13.1 120 309-450 1-126 (384)
399 KOG0741 AAA+-type ATPase [Post 86.5 5.4 0.00012 44.3 10.6 70 271-354 492-573 (744)
400 COG2109 BtuR ATP:corrinoid ade 86.5 6.1 0.00013 38.1 9.8 53 418-470 120-173 (198)
401 TIGR03880 KaiC_arch_3 KaiC dom 86.4 4 8.6E-05 40.8 9.3 53 304-369 15-67 (224)
402 COG0552 FtsY Signal recognitio 86.4 13 0.00029 39.2 13.0 130 307-472 141-279 (340)
403 PRK11034 clpA ATP-dependent Cl 86.4 3.2 7E-05 49.2 9.7 21 305-325 207-227 (758)
404 TIGR00665 DnaB replicative DNA 86.3 5.2 0.00011 44.4 11.0 114 303-433 193-318 (434)
405 PRK08506 replicative DNA helic 86.2 5.2 0.00011 45.0 10.8 114 303-433 190-315 (472)
406 KOG0742 AAA+-type ATPase [Post 86.1 6.7 0.00015 42.2 10.7 45 423-467 446-498 (630)
407 KOG0739 AAA+-type ATPase [Post 86.0 20 0.00044 37.2 13.7 54 299-368 155-213 (439)
408 PRK06647 DNA polymerase III su 85.9 4.9 0.00011 46.1 10.6 19 307-325 40-58 (563)
409 PF12846 AAA_10: AAA-like doma 85.9 0.92 2E-05 47.1 4.5 43 305-359 1-43 (304)
410 PRK08006 replicative DNA helic 85.9 9.5 0.00021 42.8 12.7 116 302-433 221-349 (471)
411 PRK05748 replicative DNA helic 85.9 5.3 0.00012 44.6 10.8 114 303-433 201-327 (448)
412 PRK13900 type IV secretion sys 85.9 2 4.3E-05 45.9 7.0 20 302-321 157-176 (332)
413 PRK10689 transcription-repair 85.8 2.7 5.9E-05 52.2 9.0 80 528-612 648-728 (1147)
414 KOG0339 ATP-dependent RNA heli 85.8 6.7 0.00014 43.3 10.7 75 529-612 295-376 (731)
415 PF01637 Arch_ATPase: Archaeal 85.8 2.3 5E-05 42.1 7.2 41 422-462 120-165 (234)
416 PRK06305 DNA polymerase III su 85.8 3.7 8E-05 45.8 9.4 40 418-459 119-158 (451)
417 cd01126 TraG_VirD4 The TraG/Tr 85.7 0.47 1E-05 51.8 2.2 48 307-368 1-48 (384)
418 PRK14948 DNA polymerase III su 85.7 2.8 6.1E-05 48.6 8.7 21 306-326 39-59 (620)
419 COG1618 Predicted nucleotide k 85.4 0.98 2.1E-05 42.4 3.8 120 306-450 6-131 (179)
420 COG2909 MalT ATP-dependent tra 85.4 2.9 6.3E-05 49.0 8.3 41 422-463 131-171 (894)
421 PF06733 DEAD_2: DEAD_2; Inte 85.3 0.62 1.3E-05 44.7 2.6 43 392-434 115-159 (174)
422 PF02572 CobA_CobO_BtuR: ATP:c 85.2 17 0.00037 34.8 12.3 54 416-469 92-146 (172)
423 TIGR00635 ruvB Holliday juncti 85.1 1.9 4.1E-05 45.3 6.4 18 306-323 31-48 (305)
424 COG3972 Superfamily I DNA and 85.1 2.6 5.6E-05 46.3 7.3 140 291-443 163-316 (660)
425 TIGR01243 CDC48 AAA family ATP 85.0 5.6 0.00012 47.4 11.0 52 268-322 175-229 (733)
426 PRK11634 ATP-dependent RNA hel 85.0 3.8 8.3E-05 47.7 9.4 77 528-612 73-155 (629)
427 TIGR02639 ClpA ATP-dependent C 85.0 6 0.00013 47.1 11.2 21 306-326 204-224 (731)
428 PRK10865 protein disaggregatio 85.0 5.7 0.00012 48.1 11.1 20 306-325 200-219 (857)
429 PHA00012 I assembly protein 84.9 10 0.00023 39.9 11.4 46 417-462 78-128 (361)
430 PF01443 Viral_helicase1: Vira 84.8 0.88 1.9E-05 45.6 3.6 14 308-321 1-14 (234)
431 PRK14971 DNA polymerase III su 84.7 4.1 8.9E-05 47.3 9.3 42 417-461 118-159 (614)
432 TIGR03346 chaperone_ClpB ATP-d 84.4 5.7 0.00012 48.1 10.8 19 306-324 195-213 (852)
433 PF10593 Z1: Z1 domain; Inter 84.2 4.3 9.2E-05 41.2 8.2 90 559-655 111-202 (239)
434 PRK14953 DNA polymerase III su 84.1 3.6 7.7E-05 46.4 8.3 35 628-663 409-443 (486)
435 PRK08760 replicative DNA helic 84.0 4.3 9.4E-05 45.6 8.9 114 303-433 227-352 (476)
436 PF02534 T4SS-DNA_transf: Type 84.0 0.88 1.9E-05 51.1 3.5 50 306-369 45-94 (469)
437 TIGR01420 pilT_fam pilus retra 83.9 2.2 4.7E-05 45.8 6.3 18 305-322 122-139 (343)
438 PF03969 AFG1_ATPase: AFG1-lik 83.8 12 0.00025 40.6 11.8 47 419-467 126-173 (362)
439 PRK13897 type IV secretion sys 83.7 0.95 2.1E-05 52.1 3.6 50 306-369 159-208 (606)
440 KOG1513 Nuclear helicase MOP-3 83.7 1.3 2.8E-05 51.0 4.4 75 577-655 850-935 (1300)
441 cd01130 VirB11-like_ATPase Typ 83.3 1.5 3.2E-05 42.6 4.3 32 291-322 10-42 (186)
442 cd01393 recA_like RecA is a b 83.3 3.2 6.8E-05 41.4 6.9 46 304-355 18-63 (226)
443 CHL00095 clpC Clp protease ATP 83.1 4.5 9.8E-05 48.8 9.2 22 306-327 201-222 (821)
444 TIGR00416 sms DNA repair prote 83.1 4.9 0.00011 44.9 8.8 91 304-433 93-183 (454)
445 TIGR02012 tigrfam_recA protein 82.9 2.4 5.2E-05 44.9 6.0 44 304-359 54-97 (321)
446 TIGR02397 dnaX_nterm DNA polym 82.7 5.4 0.00012 42.8 8.9 18 307-324 38-55 (355)
447 PRK14701 reverse gyrase; Provi 82.3 5 0.00011 51.6 9.4 66 528-597 121-187 (1638)
448 PRK04841 transcriptional regul 82.2 12 0.00027 45.5 12.8 41 422-463 123-163 (903)
449 PRK09354 recA recombinase A; P 82.0 2.9 6.3E-05 44.7 6.2 44 304-359 59-102 (349)
450 PRK09376 rho transcription ter 81.9 8.4 0.00018 41.9 9.6 20 303-322 167-186 (416)
451 PF08423 Rad51: Rad51; InterP 81.7 2.7 5.9E-05 43.1 5.8 52 298-355 26-82 (256)
452 PRK07414 cob(I)yrinic acid a,c 81.4 22 0.00048 34.2 11.3 51 417-468 112-164 (178)
453 COG1198 PriA Primosomal protei 81.3 3.8 8.3E-05 48.0 7.3 89 515-612 229-319 (730)
454 TIGR03345 VI_ClpV1 type VI sec 81.3 8.3 0.00018 46.6 10.4 19 306-324 209-227 (852)
455 PRK11776 ATP-dependent RNA hel 81.3 6.4 0.00014 44.0 9.1 75 530-612 73-153 (460)
456 KOG2228 Origin recognition com 81.1 47 0.001 35.3 14.2 56 406-462 123-181 (408)
457 KOG0329 ATP-dependent RNA heli 81.1 7.1 0.00015 39.3 8.0 93 531-631 112-215 (387)
458 cd00268 DEADc DEAD-box helicas 81.0 12 0.00026 36.3 10.0 76 528-612 68-149 (203)
459 COG1132 MdlB ABC-type multidru 80.9 4.7 0.0001 46.4 8.0 21 302-322 352-372 (567)
460 PRK09087 hypothetical protein; 80.9 4.6 0.0001 40.6 7.0 18 306-323 45-62 (226)
461 PRK05636 replicative DNA helic 80.9 8.7 0.00019 43.5 9.9 19 305-323 265-283 (505)
462 KOG0331 ATP-dependent RNA heli 80.8 7.1 0.00015 43.8 8.9 94 529-631 165-272 (519)
463 PF00437 T2SE: Type II/IV secr 80.5 1.6 3.4E-05 45.1 3.6 44 303-358 125-168 (270)
464 COG3267 ExeA Type II secretory 80.5 11 0.00024 38.2 9.3 22 302-323 47-69 (269)
465 PHA03372 DNA packaging termina 80.4 15 0.00033 41.9 11.2 130 303-461 200-336 (668)
466 TIGR01243 CDC48 AAA family ATP 80.4 8.3 0.00018 46.0 10.0 17 306-322 488-504 (733)
467 PF03266 NTPase_1: NTPase; In 80.1 2.1 4.5E-05 40.9 4.0 29 419-447 94-123 (168)
468 PRK05595 replicative DNA helic 80.0 6.7 0.00015 43.7 8.6 116 303-434 199-325 (444)
469 PHA00350 putative assembly pro 79.8 6 0.00013 43.1 7.8 53 420-473 81-155 (399)
470 PRK07399 DNA polymerase III su 79.8 11 0.00024 40.0 9.6 52 405-460 110-161 (314)
471 PRK13850 type IV secretion sys 79.7 1.6 3.5E-05 50.9 3.6 51 305-369 139-189 (670)
472 PRK10436 hypothetical protein; 79.4 2.3 4.9E-05 47.5 4.5 24 306-330 219-242 (462)
473 cd03239 ABC_SMC_head The struc 79.3 4.2 9.2E-05 39.2 5.9 41 419-460 115-156 (178)
474 KOG0347 RNA helicase [RNA proc 79.2 6.5 0.00014 43.8 7.7 57 531-596 265-321 (731)
475 PF10412 TrwB_AAD_bind: Type I 78.8 3 6.4E-05 45.6 5.2 48 301-360 11-58 (386)
476 PRK09165 replicative DNA helic 78.8 13 0.00027 42.2 10.3 126 303-433 215-354 (497)
477 TIGR02640 gas_vesic_GvpN gas v 78.8 2.1 4.6E-05 44.0 3.9 29 296-324 12-40 (262)
478 COG1197 Mfd Transcription-repa 78.8 18 0.00038 44.3 11.7 81 527-612 641-722 (1139)
479 TIGR03819 heli_sec_ATPase heli 78.2 4.3 9.3E-05 43.5 6.1 62 281-357 155-217 (340)
480 PRK13764 ATPase; Provisional 78.1 2.3 5.1E-05 48.8 4.2 26 304-330 256-281 (602)
481 PF13555 AAA_29: P-loop contai 78.0 2.7 5.9E-05 32.9 3.3 17 305-321 23-39 (62)
482 PRK06321 replicative DNA helic 77.9 23 0.00049 39.8 11.9 112 305-433 226-349 (472)
483 TIGR01054 rgy reverse gyrase. 77.8 5.3 0.00011 49.9 7.5 80 529-612 121-205 (1171)
484 PRK08058 DNA polymerase III su 77.6 5.5 0.00012 42.5 6.7 48 418-468 108-155 (329)
485 PRK07773 replicative DNA helic 77.3 11 0.00023 46.1 9.8 113 305-433 217-340 (886)
486 TIGR03743 SXT_TraD conjugative 77.1 4.7 0.0001 46.9 6.4 54 305-370 176-231 (634)
487 PF13481 AAA_25: AAA domain; P 77.1 4.8 0.0001 38.9 5.7 64 304-370 31-94 (193)
488 TIGR03754 conj_TOL_TraD conjug 77.1 5.3 0.00012 46.2 6.7 54 305-370 180-235 (643)
489 KOG1513 Nuclear helicase MOP-3 77.1 3.6 7.8E-05 47.6 5.2 156 290-462 264-454 (1300)
490 KOG2543 Origin recognition com 76.7 36 0.00077 36.7 12.0 49 419-468 114-164 (438)
491 cd01123 Rad51_DMC1_radA Rad51_ 76.5 6.3 0.00014 39.5 6.5 25 304-328 18-42 (235)
492 cd01127 TrwB Bacterial conjuga 76.5 2.6 5.6E-05 46.5 4.0 49 299-359 36-84 (410)
493 cd01131 PilT Pilus retraction 76.5 3.7 8E-05 40.3 4.6 15 308-322 4-18 (198)
494 TIGR02868 CydC thiol reductant 76.2 5.8 0.00013 45.2 6.9 20 303-322 359-378 (529)
495 COG1074 RecB ATP-dependent exo 76.2 4.2 9.1E-05 50.8 6.0 57 304-367 15-71 (1139)
496 KOG0058 Peptide exporter, ABC 75.6 6.8 0.00015 45.3 6.9 39 418-457 620-658 (716)
497 cd01129 PulE-GspE PulE/GspE Th 75.5 3.7 7.9E-05 42.4 4.5 30 293-322 66-97 (264)
498 KOG0338 ATP-dependent RNA heli 75.5 12 0.00027 41.4 8.4 90 516-614 236-335 (691)
499 KOG0745 Putative ATP-dependent 75.4 2.1 4.6E-05 46.3 2.7 22 303-324 224-245 (564)
500 PRK13876 conjugal transfer cou 75.4 2.6 5.6E-05 49.2 3.7 50 305-368 144-193 (663)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-63 Score=497.11 Aligned_cols=371 Identities=33% Similarity=0.500 Sum_probs=347.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
..+|.++++.+++.+++...++..|+++|.++||.++.|+|+|+.|.||||||.+|++|+++++.++ +..+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------p~~~ 130 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE---------PKLF 130 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC---------CCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999999885 3458
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccccccceEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAI 425 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~IV 425 (675)
+++|++|||||+.|+..++..++. +.++++.++.||.....+...+...++|+|+||++|.+++.+ +.+.+..++++|
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~-~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGS-GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcc-ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 999999999999999999999987 488999999999999999999999999999999999999984 778999999999
Q ss_pred EcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 426 IDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
+||||+++ +++|...+..|++.++...|++++|||++..+.+.....+.++..+..+..+...+.+.+.++.++..
T Consensus 210 lDEADrlL-d~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k--- 285 (476)
T KOG0330|consen 210 LDEADRLL-DMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK--- 285 (476)
T ss_pred hchHHhhh-hhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccc---
Confidence 99999999 89999999999999999999999999999999887777778888888888888888888888777665
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.|...|+.++++..+.++||||++...++.++-.|+.++ +.+..+||.|+++.|...++.|++|..
T Consensus 286 ---------~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg-----~~a~~LhGqmsq~~Rlg~l~~Fk~~~r 351 (476)
T KOG0330|consen 286 ---------DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG-----FQAIPLHGQMSQSKRLGALNKFKAGAR 351 (476)
T ss_pred ---------ccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC-----cceecccchhhHHHHHHHHHHHhccCC
Confidence 377789999999989999999999999999999999987 889999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
. ||||||+++||+|+|.|++|||||+|.+..+|+||+||++| .|.+|.++.|++..|.+.+++|+....++.+..
T Consensus 352 ~----iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaR-aGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~ 426 (476)
T KOG0330|consen 352 S----ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTAR-AGRSGKAITLVTQYDVELVQRIEHALGKKLPEY 426 (476)
T ss_pred c----EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccc-cCCCcceEEEEehhhhHHHHHHHHHHhcCCCcc
Confidence 8 99999999999999999999999999999999999999999 799999999999999999999999999999877
Q ss_pred CCChh
Q 005837 666 DVPSA 670 (675)
Q Consensus 666 ~l~~~ 670 (675)
+++.+
T Consensus 427 ~~~~~ 431 (476)
T KOG0330|consen 427 KVDKN 431 (476)
T ss_pred CcchH
Confidence 77664
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-62 Score=520.90 Aligned_cols=375 Identities=35% Similarity=0.552 Sum_probs=328.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
...|.++++++++...++..||..|+|||.++||.+++|+|++.++.|||||||+|++|++.++.... .......+|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~---~~~~~~~~P 166 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ---GKLSRGDGP 166 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc---ccccCCCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999998731 223446789
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++|||+||||||.|+.+.+.+++.. ..++..+++||.+...|...+..+++|+|+||++|.++++.....+.++.++|+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~-~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKS-LRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCC-CCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 9999999999999999999999874 568899999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCc--cccCCCceEEEEecCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM--HRISPGLEEFLVDCSGDQ 503 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~ 503 (675)
||||+|+ +++|.+++++|+.++ ++..|++++|||+|.++......++.++..+..... .....++.+++..+..
T Consensus 246 DEADrMl-dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~-- 322 (519)
T KOG0331|consen 246 DEADRML-DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE-- 322 (519)
T ss_pred ccHHhhh-ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH--
Confidence 9999999 899999999999999 555689999999999999988888876554444322 2444455555544432
Q ss_pred CCCCchhhhhhhHHHHHHHHHHhC---CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH
Q 005837 504 ESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580 (675)
Q Consensus 504 ~~~~~~~~~~~~k~~~l~~ll~~~---~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F 580 (675)
..|...|..+|... ..+++||||++++.|+.++..|+..+ +.+..+||+.+|.+|..+++.|
T Consensus 323 ----------~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~-----~~a~~iHGd~sQ~eR~~~L~~F 387 (519)
T KOG0331|consen 323 ----------TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG-----WPAVAIHGDKSQSERDWVLKGF 387 (519)
T ss_pred ----------HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC-----cceeeecccccHHHHHHHHHhc
Confidence 14555555555543 57799999999999999999998855 7899999999999999999999
Q ss_pred hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcC
Q 005837 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660 (675)
Q Consensus 581 ~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~ 660 (675)
++|+.. |||||++++||||+|+|++|||||+|.++++|+||+||+|| +|+.|.+++|++..+...+..+.+.+..
T Consensus 388 reG~~~----vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR-a~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 388 REGKSP----VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR-AGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred ccCCcc----eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc-CCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 999988 99999999999999999999999999999999999999999 8999999999999999999888887754
Q ss_pred CCCCCCCChh
Q 005837 661 GHPLHDVPSA 670 (675)
Q Consensus 661 ~~~~~~l~~~ 670 (675)
.. +.+|..
T Consensus 463 ~~--q~v~~~ 470 (519)
T KOG0331|consen 463 AG--QTVPPD 470 (519)
T ss_pred cc--CCCChH
Confidence 44 445543
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.5e-57 Score=509.73 Aligned_cols=377 Identities=30% Similarity=0.489 Sum_probs=321.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.|.++||.+|+++|.++||.+++|+|+|+++|||||||++|++|++.++..... .....++.
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~----~~~~~gp~ 205 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL----LRYGDGPI 205 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----ccCCCCcE
Confidence 58999999999999999999999999999999999999999999999999999999999988865321 11234789
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|||+||++||.|+.+.+.+++.. ..+++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 999999999999999999998764 5688899999999888888888899999999999999999888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCC-CeEEeCCCcc-ccCCCceEEEEecCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMH-RISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~-~~~i~~~~~~-~~~~~i~~~~~~~~~~~~~ 505 (675)
|||+++ +.+|...++.++..+.+..|++++|||++.++......++.. ...+...... .....+.+.+..+...
T Consensus 285 EAd~ml-d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~--- 360 (545)
T PTZ00110 285 EADRML-DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH--- 360 (545)
T ss_pred hHHhhh-hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---
Confidence 999999 789999999999999999999999999999887776666643 3222222211 2223344443332211
Q ss_pred CCchhhhhhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC
Q 005837 506 DKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS 583 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g 583 (675)
.+...+..++... ...++||||+++++|+.++..|+..+ +.+..+||+|++.+|..+++.|++|
T Consensus 361 ---------~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g-----~~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 361 ---------EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG-----WPALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred ---------hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC-----CcEEEEECCCcHHHHHHHHHHHhcC
Confidence 3556666666553 46799999999999999999998754 7889999999999999999999999
Q ss_pred CCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 584 RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 584 ~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
+.+ |||||+++++|||+|+|++||+||+|.++++|+||+||+|| .|..|.|++|+++.+...++.|.+.+....
T Consensus 427 ~~~----ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR-~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~- 500 (545)
T PTZ00110 427 KSP----IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR-AGAKGASYTFLTPDKYRLARDLVKVLREAK- 500 (545)
T ss_pred CCc----EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc-CCCCceEEEEECcchHHHHHHHHHHHHHcc-
Confidence 988 99999999999999999999999999999999999999999 799999999999999988888877766554
Q ss_pred CCCCChhhhcc
Q 005837 664 LHDVPSAFELM 674 (675)
Q Consensus 664 ~~~l~~~~e~m 674 (675)
+++|.+++.|
T Consensus 501 -q~vp~~l~~~ 510 (545)
T PTZ00110 501 -QPVPPELEKL 510 (545)
T ss_pred -CCCCHHHHHH
Confidence 6788876654
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.7e-57 Score=472.80 Aligned_cols=392 Identities=27% Similarity=0.415 Sum_probs=350.2
Q ss_pred cccCCCCCCCcccccccCCCCCCCcccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEE
Q 005837 230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309 (675)
Q Consensus 230 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvi 309 (675)
-.+..|+....--.+++++..+|.+. .+|++.+|+.++++.+...||..|+|+|.++||..+.++|+|
T Consensus 219 m~~rdwri~redynis~kg~~lpnpl------------rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~i 286 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPL------------RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPI 286 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccc------------cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCee
Confidence 34566765544455556666666655 689999999999999999999999999999999999999999
Q ss_pred EEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH
Q 005837 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389 (675)
Q Consensus 310 i~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~ 389 (675)
.++.||||||++|++|++-.+..-+..........+|.++|++|||+|++|+..+-.++++. .+++++.+.||.+..++
T Consensus 287 gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~-lg~r~vsvigg~s~EEq 365 (673)
T KOG0333|consen 287 GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKP-LGIRTVSVIGGLSFEEQ 365 (673)
T ss_pred eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccc-ccceEEEEecccchhhh
Confidence 99999999999999999998876442222234567899999999999999999999999885 67999999999999998
Q ss_pred HHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCC------------------
Q 005837 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV------------------ 451 (675)
Q Consensus 390 ~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~------------------ 451 (675)
--.+..+|+|+|+||++|.+.+.+..+.+.++.++|+|||+.|. +++|.+++..++.+++.
T Consensus 366 ~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi-DmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~ 444 (673)
T KOG0333|consen 366 GFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI-DMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRK 444 (673)
T ss_pred hhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh-cccccHHHHHHHHhCCccccCCCccchhhHHHHHh
Confidence 88889999999999999999999999999999999999999999 89999999999988763
Q ss_pred -------CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHH
Q 005837 452 -------TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (675)
Q Consensus 452 -------~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 524 (675)
-.|.++||||+++.+...+..++..+..+.....+...+.+++.++.+..+ .+...|..++
T Consensus 445 ~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed------------~k~kkL~eil 512 (673)
T KOG0333|consen 445 NFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSED------------EKRKKLIEIL 512 (673)
T ss_pred hcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecch------------HHHHHHHHHH
Confidence 168999999999999999999999998988888888888998888877665 4788899999
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi 604 (675)
......++|||+|+++.|+.+++.|.+.+ +.+..|||+-++++|..++..|++|..+ |||||+++++|||+
T Consensus 513 ~~~~~ppiIIFvN~kk~~d~lAk~LeK~g-----~~~~tlHg~k~qeQRe~aL~~fr~~t~d----IlVaTDvAgRGIDI 583 (673)
T KOG0333|consen 513 ESNFDPPIIIFVNTKKGADALAKILEKAG-----YKVTTLHGGKSQEQRENALADFREGTGD----ILVATDVAGRGIDI 583 (673)
T ss_pred HhCCCCCEEEEEechhhHHHHHHHHhhcc-----ceEEEeeCCccHHHHHHHHHHHHhcCCC----EEEEecccccCCCC
Confidence 98888899999999999999999999987 8999999999999999999999999988 99999999999999
Q ss_pred CCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 605 p~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
|+|.+|||||+++++++|+|||||+|| +|+.|.++.|+++.+.+.+..|...
T Consensus 584 pnVSlVinydmaksieDYtHRIGRTgR-AGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 584 PNVSLVINYDMAKSIEDYTHRIGRTGR-AGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred CccceeeecchhhhHHHHHHHhccccc-cccCceeEEEeccchhHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999996655544443
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-57 Score=503.07 Aligned_cols=373 Identities=33% Similarity=0.523 Sum_probs=332.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
..|+++++++.+++++.+.||..|+|+|.++||.++.|+|++++++||||||++|.+|+++.+.... ......
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-------~~~~~~ 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-------ERKYVS 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-------ccCCCc
Confidence 4799999999999999999999999999999999999999999999999999999999999976420 011111
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++||||||.|+.+.+..+......+++..++||.+...+...++.+++|+|+||++|++++.+..+.+..++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 99999999999999999999988633688999999999999998888899999999999999999999999999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCcc--ccCCCceEEEEecCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH--RISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~~~ 505 (675)
|||+|+ +++|...+..|+..++...|++++|||++..+......++.++..+...... .....+.++++.+....
T Consensus 182 EADrmL-d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-- 258 (513)
T COG0513 182 EADRML-DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-- 258 (513)
T ss_pred cHhhhh-cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--
Confidence 999999 7899999999999999999999999999998888888888776555544222 36678888888776542
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.|...|..++......++||||+++..++.++..|...+ +.+..+||+|++.+|.++++.|++|..
T Consensus 259 ---------~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g-----~~~~~lhG~l~q~~R~~~l~~F~~g~~ 324 (513)
T COG0513 259 ---------EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG-----FKVAALHGDLPQEERDRALEKFKDGEL 324 (513)
T ss_pred ---------HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC-----CeEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 488999999998887889999999999999999999876 889999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCc-cHHHHHHHHHHhcCCCC-
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK-QVSLAQRIMERNRKGHP- 663 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~-d~~~~~~l~~~~~~~~~- 663 (675)
+ |||||++++||||+|+|.+|||||+|.+.+.|+||+||+|| +|..|.+++|+.+. +...++.+........+
T Consensus 325 ~----vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgR-aG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~ 399 (513)
T COG0513 325 R----VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGR-AGRKGVAISFVTEEEEVKKLKRIEKRLERKLPS 399 (513)
T ss_pred C----EEEEechhhccCCccccceeEEccCCCCHHHheeccCcccc-CCCCCeEEEEeCcHHHHHHHHHHHHHHhccccc
Confidence 8 99999999999999999999999999999999999999999 79999999999986 88888888887655543
Q ss_pred CCCCCh
Q 005837 664 LHDVPS 669 (675)
Q Consensus 664 ~~~l~~ 669 (675)
...+|.
T Consensus 400 ~~~~~~ 405 (513)
T COG0513 400 AVLLPL 405 (513)
T ss_pred cccCCc
Confidence 334443
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-55 Score=486.79 Aligned_cols=372 Identities=28% Similarity=0.409 Sum_probs=317.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|++++|++.+++.|.++||..|+++|.++||.+++|+|++++||||||||++|++|+++.+....... .....+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--~~~~~~~~ 85 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRKVNQPR 85 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999987643211 11134679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|||+||++||.|+++.+..+... .++++..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 999999999999999999998774 5788999999988888888888889999999999999998888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCC--CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~--~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
|||+++ +.+|...+..++..++. ..+.+++|||++..+.......+.++..+...........+.+......
T Consensus 165 Ead~l~-~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~----- 238 (423)
T PRK04837 165 EADRMF-DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS----- 238 (423)
T ss_pred cHHHHh-hcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC-----
Confidence 999999 78899999999988874 4568999999999888777776665544443333333333443333221
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
...+...+..++......++||||+++..|+.+++.|...+ +.+..+||+|++.+|..+++.|++|++
T Consensus 239 -------~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g-----~~v~~lhg~~~~~~R~~~l~~F~~g~~ 306 (423)
T PRK04837 239 -------NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG-----HRVGLLTGDVAQKKRLRILEEFTRGDL 306 (423)
T ss_pred -------HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC-----CcEEEecCCCChhHHHHHHHHHHcCCC
Confidence 12467778888877777899999999999999999998765 789999999999999999999999999
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
+ |||||+++++|||+|++++||+||+|.+..+|+||+||+|| .|..|.|++|+.+.+...+..+........+..
T Consensus 307 ~----vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR-~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 307 D----ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR-AGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred c----EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccC-CCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 8 99999999999999999999999999999999999999999 799999999999998888888876655544433
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-56 Score=434.48 Aligned_cols=374 Identities=26% Similarity=0.441 Sum_probs=340.7
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 005837 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~ 345 (675)
..++|+++|+++++++.++++||.+|+.+|+.|++.|+.|+|+|+++..|+|||.+|.+.+++.+.-. .+.
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------~r~ 95 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------VRE 95 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc---------cce
Confidence 34689999999999999999999999999999999999999999999999999999998888766432 344
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEE
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IV 425 (675)
.++||++|||||+.|+.+.+..++.+ .++.+..+.||.+..+.++.+..+.+++.+||+++++++++..+.-..++++|
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~-mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDY-MNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhccc-ccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 68999999999999999999999875 67889999999999999999999999999999999999999999999999999
Q ss_pred EcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 426 IDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
+||||.|+ +.+|..++-.+++.+++..|++++|||+|.++.+...++..++..+.....+.....+.++++.+....
T Consensus 175 LDEaDemL-~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee-- 251 (400)
T KOG0328|consen 175 LDEADEML-NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE-- 251 (400)
T ss_pred eccHHHHH-HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh--
Confidence 99999999 679999999999999999999999999999999999888888888877776777777888888776653
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.|++.|.++.....-.+.+||||++..++.+.+.|++.. +.|..+||+|++++|..++..|++|+.
T Consensus 252 ---------wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n-----ftVssmHGDm~qkERd~im~dFRsg~S 317 (400)
T KOG0328|consen 252 ---------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN-----FTVSSMHGDMEQKERDKIMNDFRSGKS 317 (400)
T ss_pred ---------hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhC-----ceeeeccCCcchhHHHHHHHHhhcCCc
Confidence 488999998888777899999999999999999998865 889999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
+ ||++|++.+||+|+|.|.+|||||+|.+.+.|+||+||.|| .|++|.++.|+..+|...++.|.+.+.. .++
T Consensus 318 r----vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGR-FGRkGvainFVk~~d~~~lrdieq~yst--~i~ 390 (400)
T KOG0328|consen 318 R----VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR-FGRKGVAINFVKSDDLRILRDIEQYYST--QID 390 (400)
T ss_pred e----EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccc-cCCcceEEEEecHHHHHHHHHHHHHHhh--hcc
Confidence 8 99999999999999999999999999999999999999999 8999999999999999999999887653 347
Q ss_pred CCChhhhc
Q 005837 666 DVPSAFEL 673 (675)
Q Consensus 666 ~l~~~~e~ 673 (675)
++|.+...
T Consensus 391 emp~nvad 398 (400)
T KOG0328|consen 391 EMPMNVAD 398 (400)
T ss_pred cccchhhh
Confidence 77765543
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.7e-55 Score=488.44 Aligned_cols=368 Identities=29% Similarity=0.469 Sum_probs=324.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|++++|++.+++.|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|+++++... ...++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---------~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---------RFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---------cCCce
Confidence 479999999999999999999999999999999999999999999999999999999999988542 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++||++|+.|+.+.++.+.....++++..++|+.+...+...+..+++|+|+||++|.+++.+..+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 99999999999999999999876545688999999999988888888899999999999999999888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||++. +.+|...+..++..++...|++++|||++..+......++.++..+...... ....+.+.++.+...
T Consensus 155 Ead~~l-~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~----- 227 (460)
T PRK11776 155 EADRML-DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPD----- 227 (460)
T ss_pred CHHHHh-CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcH-----
Confidence 999999 7899999999999999999999999999998887777766665544443332 234456665544332
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
.+...+..++......++||||++++.++.+++.|.+.+ +.+..+||+|++.+|..+++.|++|..+
T Consensus 228 -------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~-----~~v~~~hg~~~~~eR~~~l~~F~~g~~~- 294 (460)
T PRK11776 228 -------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQG-----FSALALHGDLEQRDRDQVLVRFANRSCS- 294 (460)
T ss_pred -------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCc-
Confidence 377788888887777899999999999999999998865 7899999999999999999999999988
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|||||+++++|||+|++++||+||+|.+.+.|+||+||+|| .|..|.|++|+.+.+...++.+.+..........+
T Consensus 295 ---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR-~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l 370 (460)
T PRK11776 295 ---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGR-AGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPL 370 (460)
T ss_pred ---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccC-CCCcceEEEEEchhHHHHHHHHHHHhCCCCceecC
Confidence 99999999999999999999999999999999999999999 79999999999999988888888777665554455
Q ss_pred C
Q 005837 668 P 668 (675)
Q Consensus 668 ~ 668 (675)
|
T Consensus 371 ~ 371 (460)
T PRK11776 371 P 371 (460)
T ss_pred C
Confidence 4
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.3e-55 Score=489.89 Aligned_cols=379 Identities=25% Similarity=0.438 Sum_probs=318.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.|...||..|+++|.++|+.+++|+|+++++|||||||++|++|++.++....... .....+++
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~--~~~~~~~~ 198 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH--PSEQRNPL 198 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc--ccccCCce
Confidence 5799999999999999999999999999999999999999999999999999999999999886432111 11235789
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|||+||++||.|+.+.++.+... .++++..++||.....+...+..+++|+|+||++|.+++.+....+.++++||||
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~-~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKG-LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 999999999999999999988763 5688889999988888887888899999999999999999888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||+|+ +.+|...+..++..++ ..|++++|||++..+......+..+...+...........+.+....+...
T Consensus 278 Ead~ml-~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~----- 350 (518)
T PLN00206 278 EVDCML-ERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETK----- 350 (518)
T ss_pred cHHHHh-hcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccch-----
Confidence 999999 7889999999988875 689999999999988777666666555444433333334445544443321
Q ss_pred chhhhhhhHHHHHHHHHHhCC--CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSP--VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~--~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.+...+.+++.... ..++||||+++..++.+++.|.... ++.+..+||+|++.+|..+++.|++|+.
T Consensus 351 -------~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~----g~~~~~~Hg~~~~~eR~~il~~Fr~G~~ 419 (518)
T PLN00206 351 -------QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT----GLKALSIHGEKSMKERREVMKSFLVGEV 419 (518)
T ss_pred -------hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc----CcceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 34556666665432 3589999999999999999997532 2788999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
+ |||||+++++|||+|+|++||+||+|.++.+|+||+||||| .|..|.+++|+..++...+..|.+.++... .
T Consensus 420 ~----ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR-~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~--~ 492 (518)
T PLN00206 420 P----VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASR-MGEKGTAIVFVNEEDRNLFPELVALLKSSG--A 492 (518)
T ss_pred C----EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccccc-CCCCeEEEEEEchhHHHHHHHHHHHHHHcC--C
Confidence 8 99999999999999999999999999999999999999999 789999999999999888888877666544 6
Q ss_pred CCChhhhcc
Q 005837 666 DVPSAFELM 674 (675)
Q Consensus 666 ~l~~~~e~m 674 (675)
.+|.++..|
T Consensus 493 ~vp~~l~~~ 501 (518)
T PLN00206 493 AIPRELANS 501 (518)
T ss_pred CCCHHHHhC
Confidence 677766544
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.6e-55 Score=485.04 Aligned_cols=368 Identities=30% Similarity=0.470 Sum_probs=316.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+|++++|++.+++.|.++||..|+++|.++|+.+++++|+|+++|||+|||++|++|+++.+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999998654211 011234589
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcC
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDE 428 (675)
|||+||++||.|+.+.++++... .++.+..++|+.....+...+...++|+|+||++|++++....+.+.++++|||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999998764 56888999999998888878888899999999999999888888899999999999
Q ss_pred cccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCc
Q 005837 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 508 (675)
||+++ +.+|...++.++..++...|++++|||++.++......++.++..+...........+.+.+..+..
T Consensus 158 ah~ll-~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------- 229 (456)
T PRK10590 158 ADRML-DMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK------- 229 (456)
T ss_pred HHHHh-ccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-------
Confidence 99999 7889999999999999899999999999998877777777665444333322333344444432221
Q ss_pred hhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCC
Q 005837 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEA 588 (675)
Q Consensus 509 ~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~ 588 (675)
..+...+..++......++||||+++..++.+++.|...+ +.+..+||+|++.+|.++++.|++|+++
T Consensus 230 -----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~-- 297 (456)
T PRK10590 230 -----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG-----IRSAAIHGNKSQGARTRALADFKSGDIR-- 297 (456)
T ss_pred -----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHHHcCCCc--
Confidence 1355667777777767899999999999999999998765 7889999999999999999999999988
Q ss_pred ceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 589 RLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 589 ~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
|||||+++++|||+|+|++||||++|.+..+|+||+||+|| .|..|.|++|+...|..+++.+........+
T Consensus 298 --iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR-~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 298 --VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR-AAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred --EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccccc-CCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999 7899999999999999999988877665543
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-56 Score=461.72 Aligned_cols=363 Identities=28% Similarity=0.457 Sum_probs=326.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|.+++|+.++++++..+||..|+|+|..+||..+-|+|++.||.||||||.+|++|+|.++.-.+.+ ....+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~------~~~TR 254 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK------VAATR 254 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc------Cccee
Confidence 489999999999999999999999999999999999999999999999999999999999998765422 33459
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~IVI 426 (675)
|||+||||+|+.|++...++++++ ..+.++++.||...+.+-..|+..+||+|+||++|.+++++ ..+.+.++.++|+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 999999999999999999999997 56999999999999999999999999999999999999987 5678999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||||+|+ +.+|...+..|+..++++.|.++||||++.++...+.-.+..+.-++...-....+.+.+.++.+......
T Consensus 334 DEADRML-eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~- 411 (691)
T KOG0338|consen 334 DEADRML-EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREG- 411 (691)
T ss_pred chHHHHH-HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecccccc-
Confidence 9999999 89999999999999999999999999999999887777777777776666666666666666654432211
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
.+...+..++.......+|||+.++++|.++.-+|--++ +.++-+||.|+|.+|.+.++.|++.++.
T Consensus 412 --------dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg-----l~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 412 --------DREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLG-----LKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred --------ccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhh-----chhhhhcccccHHHHHHHHHHHHhccCC
Confidence 355567777777777899999999999999998887766 8889999999999999999999999999
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
|||||++++||+||++|.+||||.+|.+++.|+||+||+.| +|+.|.+++|+...++.+++.+...
T Consensus 479 ----vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR-AGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 479 ----VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR-AGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred ----EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh-cccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 8999999999999999999999876
No 12
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-54 Score=493.75 Aligned_cols=371 Identities=29% Similarity=0.476 Sum_probs=325.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|.+++|++.++++|.++||..|+++|.++|+.++.++|+|++||||+|||++|++|+++.+... ..+++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---------~~~~~ 76 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---------LKAPQ 76 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---------cCCCe
Confidence 469999999999999999999999999999999999999999999999999999999999887542 24579
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|||+||++|+.|+++.+.++.....++.+..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 99999999999999999999877545788999999998888888888899999999999999999888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||+|+ +.+|...+..++..++...|+++||||+|..+......++.++..+.........+.+.+.++.+..
T Consensus 157 EAd~ml-~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~------ 229 (629)
T PRK11634 157 EADEML-RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG------ 229 (629)
T ss_pred cHHHHh-hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech------
Confidence 999998 7899999999999999999999999999999887777777665555444333334445554443322
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..++......++||||+++..++.++..|...+ +.+..+||+|++.+|.++++.|++|+.+
T Consensus 230 ------~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g-----~~~~~lhgd~~q~~R~~il~~Fr~G~~~- 297 (629)
T PRK11634 230 ------MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG-----YNSAALNGDMNQALREQTLERLKDGRLD- 297 (629)
T ss_pred ------hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC-----CCEEEeeCCCCHHHHHHHHHHHhCCCCC-
Confidence 1477788888887777899999999999999999998765 7889999999999999999999999988
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|||||+++++|||+|+|++|||||+|.+.+.|+||+||+|| .|+.|.+++|+.+.+...++.|.+......+...+
T Consensus 298 ---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR-aGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~ 373 (629)
T PRK11634 298 ---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 373 (629)
T ss_pred ---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC-CCCcceEEEEechHHHHHHHHHHHHhCCCcceecC
Confidence 99999999999999999999999999999999999999999 79999999999999988899888877766655555
Q ss_pred Chh
Q 005837 668 PSA 670 (675)
Q Consensus 668 ~~~ 670 (675)
|..
T Consensus 374 p~~ 376 (629)
T PRK11634 374 PNA 376 (629)
T ss_pred CcH
Confidence 553
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-54 Score=489.02 Aligned_cols=370 Identities=30% Similarity=0.437 Sum_probs=315.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|++++|++.+++.|.++||..|+++|.++||.+++|+|+++++|||||||++|++|+++.+...... .......++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~--~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL--ADRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc--cccccCCce
Confidence 369999999999999999999999999999999999999999999999999999999999988653210 011123579
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-ccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~IVI 426 (675)
+|||+||++|+.|+++.+.+++.. .++++..++|+.....+...+..+++|+|+||++|++++.+. .+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 999999999999999999998774 678899999999988887788888999999999999988764 467889999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCC--CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~--~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
||||+++ +.+|...+..++..++. ..|++++|||++..+.......+.....+...........+.+.++....
T Consensus 166 DEAh~ll-d~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--- 241 (572)
T PRK04537 166 DEADRMF-DLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD--- 241 (572)
T ss_pred cCHHHHh-hcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH---
Confidence 9999998 78899999999988876 67999999999998888777776554433332222223344444443221
Q ss_pred CCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
..+...+..++......++||||+++..|+.+++.|...+ +.+..+||+|++.+|.++++.|++|+
T Consensus 242 ---------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g-----~~v~~lhg~l~~~eR~~il~~Fr~G~ 307 (572)
T PRK04537 242 ---------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG-----YRVGVLSGDVPQKKRESLLNRFQKGQ 307 (572)
T ss_pred ---------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 2467778888887778899999999999999999998765 78999999999999999999999999
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
++ |||||+++++|||+|+|++||+||+|.+.++|+||+||+|| .|..|.|++|+...+...+..+........+
T Consensus 308 ~~----VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR-~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 308 LE----ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR-LGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred Ce----EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccccc-CCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 88 99999999999999999999999999999999999999999 7999999999999888888888776655543
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.3e-53 Score=471.97 Aligned_cols=366 Identities=30% Similarity=0.488 Sum_probs=314.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+|+++++++.+++.|.++||..|+++|.++|+.+++++|+++++|||+|||++|++|+++++.... .....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-----~~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-----RRKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCceE
Confidence 689999999999999999999999999999999999999999999999999999999999987532 112345799
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcC
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDE 428 (675)
||++||++|+.|+.+++..+... .++.+..++|+.....+...+..+++|+|+||++|++++....+.+.++++|||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHcc-CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999998875 56889999999988888777788899999999999999998888899999999999
Q ss_pred cccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHH-HhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV-EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~-~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
||+++ +.+|...+..+....+...|+++||||++......+. .++.++..+...........+.+++......
T Consensus 156 ah~~l-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----- 229 (434)
T PRK11192 156 ADRML-DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL----- 229 (434)
T ss_pred HHHHh-CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH-----
Confidence 99999 7899999999999888889999999999865444443 4444444443333333344455555433221
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..+++.....++||||+++++|+.++..|+..+ +.+..+||+|++.+|..+++.|++|+++
T Consensus 230 ------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~l~g~~~~~~R~~~l~~f~~G~~~- 297 (434)
T PRK11192 230 ------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG-----INCCYLEGEMVQAKRNEAIKRLTDGRVN- 297 (434)
T ss_pred ------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC-----CCEEEecCCCCHHHHHHHHHHHhCCCCc-
Confidence 1467778888877677899999999999999999998755 7899999999999999999999999998
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~ 662 (675)
|||||+++++|||+|++++|||||+|.+...|+||+||+|| .|..|.+++|+...|...+.++.+......
T Consensus 298 ---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR-~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 298 ---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR-AGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred ---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc-CCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999 799999999999999888888876554433
No 15
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.4e-54 Score=447.00 Aligned_cols=362 Identities=32% Similarity=0.510 Sum_probs=320.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 005837 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~ 345 (675)
....|++..|++..+++++++||..+|++|..+|+.++.|+|+++.|.||+|||++|++|+++++.+.+.. ...+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~-----~r~~ 154 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK-----PRNG 154 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC-----CCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999886533 2356
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-ccccccceEE
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCA 424 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~I 424 (675)
..+|||||||+|+.|++.+++++..++....+.++.||+........+..++.|+|+||++|++++++. .+....++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 689999999999999999999999987788999999999999988888889999999999999999984 4456678899
Q ss_pred EEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCC-CeEE--eCCCccccCCCceEEEEecCC
Q 005837 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVV--MGPGMHRISPGLEEFLVDCSG 501 (675)
Q Consensus 425 VIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~-~~~i--~~~~~~~~~~~i~~~~~~~~~ 501 (675)
|+||||+++ +.+|+..+.+|++.++...|.++||||.+.++.+...-.+.. +..+ ...........+++-++.+..
T Consensus 235 vlDEADrlL-d~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~ 313 (543)
T KOG0342|consen 235 VLDEADRLL-DIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS 313 (543)
T ss_pred Eeecchhhh-hcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc
Confidence 999999999 899999999999999999999999999999998776655543 3222 223334445566665665555
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHhCCC-CceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH
Q 005837 502 DQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580 (675)
Q Consensus 502 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~-~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F 580 (675)
+ ..+..+..+++++.. .++||||+|...+..+++.|+... +.|.-+||+++|..|..++.+|
T Consensus 314 ~------------~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-----lpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 314 D------------SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-----LPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred c------------chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-----CchhhhhcCCcccccchHHHHH
Confidence 4 356778888887765 899999999999999999998655 8899999999999999999999
Q ss_pred hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHH
Q 005837 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 581 ~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
++.+.. |||||++++||+|+|+|++||+||.|.++++|+||+||+|| .|+.|.+++|+.+.+..+++.|.
T Consensus 377 ~kaesg----IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR-~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 377 CKAESG----ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAR-EGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred hhcccc----eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccc-cCCCceEEEEeChhHHHHHHHHh
Confidence 999988 99999999999999999999999999999999999999999 89999999999999999998886
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-54 Score=425.11 Aligned_cols=368 Identities=27% Similarity=0.456 Sum_probs=330.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
...|+++.|..+++..+.+.||.+|+|+|+++||.++.|+|+++.|..|+|||-+|.+|+++.+... ...-
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---------~~~I 154 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---------KNVI 154 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---------ccce
Confidence 3589999999999999999999999999999999999999999999999999999999999888543 2345
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+++|++|||+||.|..+.+++++++ .++.++..+||++.+..+-++....+++|+||++++++..++.-.++.+.++|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh-~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKH-LGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcc-cCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 8999999999999999999999986 679999999999999998889999999999999999999998889999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||||.++ +..|...+..++..+|+..|++++|||+|..+..+..+.+.++..+..-.. .....+.+++..+...
T Consensus 234 DEADKlL-s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~---- 307 (459)
T KOG0326|consen 234 DEADKLL-SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEER---- 307 (459)
T ss_pred chhhhhh-chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechh----
Confidence 9999999 899999999999999999999999999999999999998887766554322 2223444444433332
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
.|..+|..++.+..-.+.||||||.+.++.+++.+.+++ +.+.++|+.|.++.|.+++..|++|..+
T Consensus 308 --------qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG-----yscyyiHakM~Q~hRNrVFHdFr~G~cr 374 (459)
T KOG0326|consen 308 --------QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG-----YSCYYIHAKMAQEHRNRVFHDFRNGKCR 374 (459)
T ss_pred --------hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc-----chhhHHHHHHHHhhhhhhhhhhhccccc
Confidence 488889999988888899999999999999999999988 8899999999999999999999999877
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~ 666 (675)
.||||+.+.||||+++|++|||||+|++.+.|+||+||.|| .|..|.++.+++.+|...+.++++.+... +..
T Consensus 375 ----nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGR-FGhlGlAInLityedrf~L~~IE~eLGtE--I~p 447 (459)
T KOG0326|consen 375 ----NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR-FGHLGLAINLITYEDRFNLYRIEQELGTE--IKP 447 (459)
T ss_pred ----eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCcc-CCCcceEEEEEehhhhhhHHHHHHHhccc--ccc
Confidence 99999999999999999999999999999999999999999 89999999999999999999998877644 466
Q ss_pred CChh
Q 005837 667 VPSA 670 (675)
Q Consensus 667 l~~~ 670 (675)
+|+.
T Consensus 448 ip~~ 451 (459)
T KOG0326|consen 448 IPSN 451 (459)
T ss_pred CCCc
Confidence 6653
No 17
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.6e-55 Score=437.90 Aligned_cols=414 Identities=28% Similarity=0.423 Sum_probs=339.0
Q ss_pred ccccccCccccCCCCCCCcccccccCCCCCCCcccccCCCCCc--cccccccccCCCHHHHHHHHHCCCCCChHHHHHHh
Q 005837 222 NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF--FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299 (675)
Q Consensus 222 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i 299 (675)
.+.....+.+...|..+..+...+.+............-+++. .+..+|.++.++..+++.|++.|+.+|+|+|.+.+
T Consensus 122 akGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGl 201 (610)
T KOG0341|consen 122 AKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGL 201 (610)
T ss_pred hCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCc
Confidence 3445666788899998876655544333322222222222222 23479999999999999999999999999999999
Q ss_pred hhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc----CC-CC
Q 005837 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK----CG-VP 374 (675)
Q Consensus 300 ~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~----~~-~~ 374 (675)
|.+++|+|.|-+|-||||||++|.+|++....+.+.. ++-....||..|||||+|+|+.|.++.+..+.. .+ +.
T Consensus 202 PvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~-lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 202 PVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM-LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred ceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc-CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9999999999999999999999999999888776543 555667899999999999999999888777532 22 45
Q ss_pred ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCcc
Q 005837 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454 (675)
Q Consensus 375 ~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~q 454 (675)
++..++.||....++...++.+.+|+|+||++|.+++..+.+.+.-++++++||||+|. +++|..+++.++..+....|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmi-DmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMI-DMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHh-hccchhhHHHHHHHHhhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEE
Q 005837 455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIV 534 (675)
Q Consensus 455 iI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IV 534 (675)
.++||||+|..+..+....+-.+..+........+.++-+. ..+.....|...+++.+++.. .++||
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe------------vEyVkqEaKiVylLeCLQKT~-PpVLI 426 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE------------VEYVKQEAKIVYLLECLQKTS-PPVLI 426 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH------------HHHHHhhhhhhhHHHHhccCC-CceEE
Confidence 99999999999999988877666555443332222221110 011222246666777776654 58999
Q ss_pred EecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcC
Q 005837 535 FCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614 (675)
Q Consensus 535 F~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d 614 (675)
||..+.+++.+.++|--.+ +.+..+||+-++++|...++.|+.|+-. |||||++++.|+|+|++.||||||
T Consensus 427 FaEkK~DVD~IhEYLLlKG-----VEavaIHGGKDQedR~~ai~afr~gkKD----VLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLKG-----VEAVAIHGGKDQEDRHYAIEAFRAGKKD----VLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred EeccccChHHHHHHHHHcc-----ceeEEeecCcchhHHHHHHHHHhcCCCc----eEEEecchhccCCCccchhhccCC
Confidence 9999999999999997655 8899999999999999999999999887 999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccccCCCCccEEEEEEeCccH----HHHHHHHHHhcC
Q 005837 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV----SLAQRIMERNRK 660 (675)
Q Consensus 615 ~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~----~~~~~l~~~~~~ 660 (675)
+|..+++|+||+||+|| .|+.|.+.+|+..+.. .-++.++...++
T Consensus 498 MP~eIENYVHRIGRTGR-sg~~GiATTfINK~~~esvLlDLK~LL~EakQ 546 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGR-SGKTGIATTFINKNQEESVLLDLKHLLQEAKQ 546 (610)
T ss_pred ChHHHHHHHHHhcccCC-CCCcceeeeeecccchHHHHHHHHHHHHHhhc
Confidence 99999999999999999 8999999999986542 234555555553
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-52 Score=432.55 Aligned_cols=364 Identities=28% Similarity=0.480 Sum_probs=315.5
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 269 SFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 269 ~f~~~~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
.|++++ |++++++++..+||..+||+|..+||.+++++|+++.++||||||++|++|++..+....... .+...
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~----~~~~v 80 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKT----PPGQV 80 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCC----Cccce
Confidence 566665 459999999999999999999999999999999999999999999999999999996543221 12234
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhcc--cccccceE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINLRC 423 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~--~~l~~i~~ 423 (675)
.+|||+|||||+.|+.+.+..+..+-.++++.++.||.+..+....++ .++.|+|+|||+|.+++++.. +.+.++.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 789999999999999999999887657789999999988888776665 468899999999999998744 45569999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccc--cCCCceEEEEecCC
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR--ISPGLEEFLVDCSG 501 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~ 501 (675)
+|+||||+++ +++|...+..|+..+|+..++=+||||...++.+.....+.++..+....... .+..+..+++.+..
T Consensus 161 LVLDEADrLl-dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a 239 (567)
T KOG0345|consen 161 LVLDEADRLL-DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA 239 (567)
T ss_pred EEecchHhHh-cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH
Confidence 9999999999 89999999999999999999999999999999887766777776555443333 55556666666666
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHh
Q 005837 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581 (675)
Q Consensus 502 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~ 581 (675)
+ .|...+..++..+...++|||.+|...++..+..|..+.. ...+..+||.|++..|..+++.|.
T Consensus 240 ~------------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~---~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 240 D------------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLK---KREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred H------------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhC---CCcEEEecchhcchhHHHHHHHHH
Confidence 5 5999999999999999999999999999999999988742 368899999999999999999999
Q ss_pred cCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 582 ~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
+.... ||+||++++||||+|+|++||+||+|.++..|.||+||++| .|..|.+++|+.+.+.+|...+.-+
T Consensus 305 ~~~~~----vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR-~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 305 KLSNG----VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTAR-AGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred hccCc----eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhh-ccCccceEEEecccHHHHHHHHHhc
Confidence 96655 99999999999999999999999999999999999999999 7999999999999888887766443
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.3e-52 Score=462.83 Aligned_cols=368 Identities=28% Similarity=0.459 Sum_probs=310.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
..|.++++++.+.+.|.++||..|+++|.++|+.+++|+|+|+++|||||||++|++|+++.+...... .......++
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--~~~~~~~~~ 164 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--KERYMGEPR 164 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc--cccccCCce
Confidence 478899999999999999999999999999999999999999999999999999999999998764211 001122579
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+|||+||++|+.|+.+.++.+... .++.+..++|+.....+...+. ..++|+|+||++|+.++.+....+.++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999998764 5678888999887766665554 46899999999999988887788999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCC--CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~--~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
||+|++. +.+|...++.++..++. ..|++++|||++.++.+....++.++..+...........+.+.+..+...
T Consensus 244 DEah~l~-~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 320 (475)
T PRK01297 244 DEADRML-DMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS-- 320 (475)
T ss_pred chHHHHH-hcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch--
Confidence 9999998 67899999999888754 579999999999988887777666554443333333334444444433221
Q ss_pred CCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
.+...+..++......++||||+++++++.+++.|...+ +.+..+||+|++++|.++++.|++|+
T Consensus 321 ----------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~R~~~~~~Fr~G~ 385 (475)
T PRK01297 321 ----------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDG-----INAAQLSGDVPQHKRIKTLEGFREGK 385 (475)
T ss_pred ----------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 366677778877777899999999999999999998765 77899999999999999999999999
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCC
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~ 661 (675)
++ |||||+++++|||+|++++||+|++|.++.+|+||+||||| .|..|.+++|+..+|..++..+.+.....
T Consensus 386 ~~----vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR-~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 386 IR----VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR-AGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred Cc----EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCC-CCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 88 99999999999999999999999999999999999999999 79999999999998888888887766544
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-53 Score=422.02 Aligned_cols=364 Identities=31% Similarity=0.458 Sum_probs=310.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
..|+.+|+++.+.+.++++|+..|+|+|..|||.|+.|+|+|-+|.||||||.+|.+|+++.+.+.+ .+-.
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP---------~giF 77 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---------YGIF 77 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC---------Ccce
Confidence 6899999999999999999999999999999999999999999999999999999999999998763 4568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc----ccccccceE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRC 423 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~----~~~l~~i~~ 423 (675)
++|++|||+|+.|+.++|..+++. ..+++.+++||...-.+...+...++++|+|||++..++... ...++++++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~-l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKL-LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhccc-ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 999999999999999999999885 789999999999998888889999999999999999888764 345788999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCC--CeEEeCCCccccCCCceEEEEecCC
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSG 501 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~ 501 (675)
+|+||||.++ ...|...+..++..+|...|.++||||++..+......-... ........-......+.+-++-++.
T Consensus 157 lVlDEADrvL-~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~ 235 (442)
T KOG0340|consen 157 LVLDEADRVL-AGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI 235 (442)
T ss_pred EEecchhhhh-ccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch
Confidence 9999999999 679999999999999999999999999987765433211111 1111111111122223333333332
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHhC---CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHH
Q 005837 502 DQESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMK 578 (675)
Q Consensus 502 ~~~~~~~~~~~~~~k~~~l~~ll~~~---~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~ 578 (675)
+ .+...+..+++.. ..+.++||+++..+|+.++..|+.+. +.+..+|+.|+|.+|...+.
T Consensus 236 ~------------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le-----~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 236 D------------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE-----VRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred h------------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc-----eeeeehhhcchHHHHHHHHH
Confidence 2 2445555666543 35789999999999999999999876 89999999999999999999
Q ss_pred HHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 579 EFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 579 ~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
+|+++..+ |||||++++||+|||.|..|||||+|.++.+|+||+||+.| +|..|.++.|+...|.+++..|++..
T Consensus 299 rFrs~~~~----iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtAR-AGR~G~aiSivt~rDv~l~~aiE~~i 373 (442)
T KOG0340|consen 299 RFRSNAAR----ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTAR-AGRKGMAISIVTQRDVELLQAIEEEI 373 (442)
T ss_pred HHhhcCcc----EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhc-ccCCcceEEEechhhHHHHHHHHHHH
Confidence 99999998 99999999999999999999999999999999999999999 89999999999999999999999877
Q ss_pred cCCCCC
Q 005837 659 RKGHPL 664 (675)
Q Consensus 659 ~~~~~~ 664 (675)
.+....
T Consensus 374 gkKl~e 379 (442)
T KOG0340|consen 374 GKKLTE 379 (442)
T ss_pred hccccc
Confidence 766543
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-53 Score=444.49 Aligned_cols=381 Identities=29% Similarity=0.473 Sum_probs=332.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCC-CCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~-~~~ 346 (675)
..|.+..+.+.+..++...++..|+|+|+.+||.+..|++++++|+||||||.+|++|++.++++........... ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 3788778889999999999999999999999999999999999999999999999999999999876544433333 469
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++||++||||||.|++.+.+++.- ...++....+|+.+...+...+..+++|+|+||++|.++++.+.+.+.+++++|+
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 999999999999999999999865 3568899999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCC----CccEEEEecCCCHHHHHHHHHhCCC-CeEEeCCCccccCCCceEEEEecCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPV----TAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSG 501 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~----~~qiI~lSAT~~~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~ 501 (675)
||||.|++.++|.+.++.|+.+... ..|.++||||+|.++......++.+ ...+..........++.+-+..+..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 9999999559999999999988754 6799999999999988865555554 4444445555666667666665554
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHhCC----CC-----ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHH
Q 005837 502 DQESDKTPETAFLNKKSALLQLIEKSP----VS-----KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572 (675)
Q Consensus 502 ~~~~~~~~~~~~~~k~~~l~~ll~~~~----~~-----k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~e 572 (675)
. +|...|++++.... .+ +++|||.+++.|..++..|...+ +.+..+||+-++.+
T Consensus 313 ~------------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-----~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 313 M------------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-----YPAKSIHGDRTQIE 375 (482)
T ss_pred h------------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-----CCceeecchhhhhH
Confidence 3 47788888876433 33 79999999999999999998866 78899999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHH
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQ 652 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~ 652 (675)
|.+.+..|+.|... +||||++++||||+|+|+|||+||+|.+..+|+||+||+|| .|..|.++.|+...+....+
T Consensus 376 r~~al~~Fr~g~~p----vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR-~Gn~G~atsf~n~~~~~i~~ 450 (482)
T KOG0335|consen 376 REQALNDFRNGKAP----VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGR-VGNGGRATSFFNEKNQNIAK 450 (482)
T ss_pred HHHHHHHhhcCCcc----eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhcccccc-CCCCceeEEEeccccchhHH
Confidence 99999999999999 99999999999999999999999999999999999999999 79999999999998888888
Q ss_pred HHHHHhcCCCCCCCCChhhhc
Q 005837 653 RIMERNRKGHPLHDVPSAFEL 673 (675)
Q Consensus 653 ~l~~~~~~~~~~~~l~~~~e~ 673 (675)
.|.+...... +++|.+++-
T Consensus 451 ~L~~~l~ea~--q~vP~wl~~ 469 (482)
T KOG0335|consen 451 ALVEILTEAN--QEVPQWLSE 469 (482)
T ss_pred HHHHHHHHhc--ccCcHHHHh
Confidence 8888776665 778887654
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-51 Score=451.31 Aligned_cols=362 Identities=27% Similarity=0.450 Sum_probs=309.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+++.++||..|+++|.++|+.+++++|+++++|||||||++|++|+++.+... ..+++
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------~~~~~ 98 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---------LNACQ 98 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---------CCCce
Confidence 689999999999999999999999999999999999999999999999999999999999877431 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.+..++.. ..+.+..+.|+......+..+..+++|+|+||++|.+++......+.++++||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDY-LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhh-cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 999999999999999999988764 4567778889888777777778889999999999999988877789999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|+|++. +.++...+..++...++..|++++|||++..+......++..+..+...........+.+++......
T Consensus 178 Eah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 251 (401)
T PTZ00424 178 EADEML-SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE----- 251 (401)
T ss_pred cHHHHH-hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH-----
Confidence 999998 67788888889999988999999999999988776666665544443333222233444444433211
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..++......++||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+++
T Consensus 252 ------~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~-----~~~~~~h~~~~~~~R~~i~~~f~~g~~~- 319 (401)
T PTZ00424 252 ------EWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD-----FTVSCMHGDMDQKDRDLIMREFRSGSTR- 319 (401)
T ss_pred ------HHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----CcEEEEeCCCCHHHHHHHHHHHHcCCCC-
Confidence 1245566677776667889999999999999999998754 7899999999999999999999999998
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~ 661 (675)
|||||+++++|||+|++++||++++|.+...|+||+||+|| .|..|.|++|+.+++...++++.+.....
T Consensus 320 ---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR-~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 320 ---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGR-FGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred ---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccccc-CCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999 78999999999999999999887766543
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-53 Score=427.32 Aligned_cols=376 Identities=28% Similarity=0.488 Sum_probs=324.1
Q ss_pred cccc-cCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 269 ~f~~-~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
+|++ +...+++++.+++.||.+|+|+|.++||.+++|.|++.++.||+|||++|++|.+-++..... ......+|.
T Consensus 220 tFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---~~~qr~~p~ 296 (629)
T KOG0336|consen 220 TFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---RREQRNGPG 296 (629)
T ss_pred cHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccch---hhhccCCCc
Confidence 4543 356789999999999999999999999999999999999999999999999999888754321 223466889
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|+++||++|+.|+.-.+.++.- .+++..+++|+.+...+...++.+.+|+++||++|.++.......+..+.++|+|
T Consensus 297 ~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlD 374 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLD 374 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEec
Confidence 99999999999999999888764 3578899999999999999999999999999999999999989999999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCC-CceEEEEecCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP-GLEEFLVDCSGDQESD 506 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ 506 (675)
|||.|+ +++|.+.+++|+--..+..|+++.|||+|..+......++.++.++....+..... .+.+.+ -+..+.
T Consensus 375 EADrML-DMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~--- 449 (629)
T KOG0336|consen 375 EADRML-DMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDS--- 449 (629)
T ss_pred chhhhh-cccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccH---
Confidence 999999 89999999999999999999999999999999999999998877776665544332 233333 222221
Q ss_pred CchhhhhhhHHHHHHHHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
++...+..++... ...++||||.++..|+.|...|.-.+ +..-.+||+-++.+|...++.|++|.+
T Consensus 450 --------~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g-----i~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 450 --------EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG-----ISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred --------HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc-----cchhhccCChhhhhHHHHHHhhhcCce
Confidence 5666666666654 47899999999998888888776544 778889999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
+ |||||+++++|+|+|++.||++||+|.++++|+||+||+|| +|+.|.++.|+..+|...++.|++.++... +
T Consensus 517 r----ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR-aGr~G~sis~lt~~D~~~a~eLI~ILe~ae--Q 589 (629)
T KOG0336|consen 517 R----ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR-AGRTGTSISFLTRNDWSMAEELIQILERAE--Q 589 (629)
T ss_pred E----EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc-CCCCcceEEEEehhhHHHHHHHHHHHHHhh--h
Confidence 8 99999999999999999999999999999999999999999 899999999999999999888877766555 7
Q ss_pred CCChhhhcc
Q 005837 666 DVPSAFELM 674 (675)
Q Consensus 666 ~l~~~~e~m 674 (675)
++|..+.-|
T Consensus 590 evPdeL~~m 598 (629)
T KOG0336|consen 590 EVPDELVRM 598 (629)
T ss_pred hCcHHHHHH
Confidence 777765443
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-52 Score=433.17 Aligned_cols=362 Identities=28% Similarity=0.455 Sum_probs=319.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
..|+++.|+...++.|++.+|..++.+|.++||..+.|+|++..|.|||||||+|++|+++++...+.. ...|--
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs-----~~DGlG 143 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS-----PTDGLG 143 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC-----CCCCce
Confidence 479999999999999999999999999999999999999999999999999999999999999886543 456778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~IVI 426 (675)
+|||+|||+||.|++..+.+.+++ ..+...++.||........++. ...|+||||++|+.++.+ ..+...++.++|+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 999999999999999999999986 6789999999999877766654 489999999999988876 4567788999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeC--CCccccCCCceEEEEecCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG--PGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~--~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
||||+|+ +++|...+..|+..+++..|+++||||.+..+.....-.+.++..+-. ......+.++.++++.+...
T Consensus 222 DEADR~L-DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~-- 298 (758)
T KOG0343|consen 222 DEADRML-DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLE-- 298 (758)
T ss_pred ccHHHHH-HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehh--
Confidence 9999999 899999999999999999999999999998887655544555544432 33455666777777766544
Q ss_pred CCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
.|...|..+|+.+...++|||+.|.+++..++..++++.+ ++.+..+||.|+|..|.+++.+|....
T Consensus 299 ----------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrp---g~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 299 ----------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP---GIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred ----------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCC---CCceeeeccchhHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999998764 378999999999999999999999877
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCcc-HHHHHHHHHH
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VSLAQRIMER 657 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~~~~~l~~~ 657 (675)
.- ||+||++++||+|+|.|++||++|.|.++..|+||+||+.| .+..|.+++++.+.+ ..++.+|.+.
T Consensus 366 ~~----vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR-~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 366 AV----VLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR-YKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ce----EEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc-ccCCCceEEEEcchhHHHHHHHHHHc
Confidence 66 99999999999999999999999999999999999999999 789999999999988 4455555444
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-51 Score=423.78 Aligned_cols=380 Identities=28% Similarity=0.450 Sum_probs=341.2
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCC
Q 005837 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (675)
Q Consensus 265 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~ 344 (675)
.+..+|+++++.+.+..++++..|.+|+++|.+++|..++|++++-+|.||||||-+|+.|++.++++.+.- ..+.
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL----~~g~ 295 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL----KPGE 295 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh----cCCC
Confidence 345799999999999999999999999999999999999999999999999999999999999999876421 2367
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
+|..||+||||+|+.|++.++++|++. .++++++++||.+.-++...|+.++.||||||++|+++..-+...+.+++++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~-ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKA-YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhh-ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 899999999999999999999999884 7899999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC
Q 005837 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 425 VIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
|||||++|. +++|.+.++.|..+..+..|.|+||||++..+......++.++..++..........+.+.+.-+.+..
T Consensus 375 V~DEadrmf-dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~- 452 (731)
T KOG0339|consen 375 VLDEADRMF-DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEE- 452 (731)
T ss_pred EEechhhhh-ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcH-
Confidence 999999999 899999999999999999999999999999999999999888877777677777777887777666543
Q ss_pred CCCchhhhhhhHHHHHHHHHH-hCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC
Q 005837 505 SDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS 583 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g 583 (675)
.|+..|..-|- -...+++|||+.....++.++..|+-.+ +.+..+||+|.+.+|.+++..|+.+
T Consensus 453 ----------~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~-----~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 453 ----------KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG-----FNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ----------HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc-----ceeeeecCchhhHHHHHHHHHHhhc
Confidence 34444443332 2346799999999999999999997655 8999999999999999999999999
Q ss_pred CCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 584 RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 584 ~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
... |||+|+++++|+|||.++.||+||+-.+++.|.||+||+|| +|..|.+|++++..|..++-.|...+....
T Consensus 518 ~~~----VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgR-ag~kGvayTlvTeKDa~fAG~LVnnLe~ag- 591 (731)
T KOG0339|consen 518 RKP----VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGR-AGEKGVAYTLVTEKDAEFAGHLVNNLEGAG- 591 (731)
T ss_pred CCc----eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccc-ccccceeeEEechhhHHHhhHHHHHHhhcc-
Confidence 888 99999999999999999999999999999999999999999 789999999999999999999988777665
Q ss_pred CCCCChhhhc
Q 005837 664 LHDVPSAFEL 673 (675)
Q Consensus 664 ~~~l~~~~e~ 673 (675)
+.||..+-.
T Consensus 592 -QnVP~~l~d 600 (731)
T KOG0339|consen 592 -QNVPDELMD 600 (731)
T ss_pred -ccCChHHHH
Confidence 777875543
No 26
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-52 Score=414.95 Aligned_cols=367 Identities=27% Similarity=0.432 Sum_probs=328.3
Q ss_pred CCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhh
Q 005837 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336 (675)
Q Consensus 259 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~ 336 (675)
.+++++++..+|++++|++++++.++.|+|.+|+.+|+.++|.++.. +|+|.++..|+|||.||.|.+|.++.-.
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---
Confidence 46788999999999999999999999999999999999999999986 8999999999999999999999877432
Q ss_pred ccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cc
Q 005837 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GI 415 (675)
Q Consensus 337 ~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~ 415 (675)
...|.+++|+|+|+||.|+.+.+.+++++. ++...+...+.....-.. -..+|+|+||+.+.+++.. +.
T Consensus 158 ------~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~ 227 (477)
T KOG0332|consen 158 ------VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKC 227 (477)
T ss_pred ------ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHh
Confidence 457899999999999999999999999984 777777776662221111 1247999999999999887 88
Q ss_pred cccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEE
Q 005837 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495 (675)
Q Consensus 416 ~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~ 495 (675)
+.+..++++|+||||.|++..+|...-..|...++++.|++++|||+...+..+..++.++...+...........+.++
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQl 307 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQL 307 (477)
T ss_pred hChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhh
Confidence 99999999999999999988899999999999999999999999999999999999999998888888888888899999
Q ss_pred EEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHH
Q 005837 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~ 575 (675)
++.|.... +|+..|.++.....-++.||||.++..+.+++..|.+.+ +.|..+||+|..++|..
T Consensus 308 yv~C~~~~-----------~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G-----h~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 308 YVLCACRD-----------DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG-----HQVSLLHGDLTVEQRAA 371 (477)
T ss_pred eeeccchh-----------hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC-----ceeEEeeccchhHHHHH
Confidence 99998765 588889988777777899999999999999999999876 88999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC------CHHHHHHHhcccccCCCCccEEEEEEeCcc-H
Q 005837 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-V 648 (675)
Q Consensus 576 v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~ 648 (675)
+++.|+.|..+ |||+|++++||||++.|.+|||||+|. +.+.|+||+||+|| .|+.|.++.|+...+ .
T Consensus 372 ii~~Fr~g~~k----VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGR-FGkkG~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 372 IIDRFREGKEK----VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGR-FGKKGLAINLVDDKDSM 446 (477)
T ss_pred HHHHHhcCcce----EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccc-ccccceEEEeecccCcH
Confidence 99999999998 999999999999999999999999996 78999999999999 899999999988644 6
Q ss_pred HHHHHHHHHhc
Q 005837 649 SLAQRIMERNR 659 (675)
Q Consensus 649 ~~~~~l~~~~~ 659 (675)
....+|.+.+.
T Consensus 447 ~~mn~iq~~F~ 457 (477)
T KOG0332|consen 447 NIMNKIQKHFN 457 (477)
T ss_pred HHHHHHHHHHh
Confidence 67777776553
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-51 Score=426.64 Aligned_cols=382 Identities=28% Similarity=0.425 Sum_probs=300.6
Q ss_pred ccccccccCCCHHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCC
Q 005837 266 SRKSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~ 344 (675)
....|..+||++.+...|+. +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+...+.. -....
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k---i~Rs~ 210 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK---IQRSD 210 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc---ccccC
Confidence 34689999999999999976 799999999999999999999999999999999999999999999875422 22467
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccccccceE
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRC 423 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~ 423 (675)
|+.+|||+||||||.|+++.+.++.+...-+-.+.+.||.+.+.+..++++++.|+|+||++|.+.+.+ ..+.+.++++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 899999999999999999999999875333456788999999999999999999999999999998887 5678889999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCC-------------CCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCcccc-C
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSP-------------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-S 489 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~-------------~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~-~ 489 (675)
+|+||+|+++ +.+|...+..|++.+. +..|.+++|||++..+.....-.+.++..+-....+.. .
T Consensus 291 lVlDEaDrll-eLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 291 LVLDEADRLL-ELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEecchhHHH-hccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 9999999999 8999999998877652 23688999999998887655555666655542211111 1
Q ss_pred CCce--EEEEec--CCCCCCCCchhh--------hhhhHHHHHHH----HHHhCCCCceEEEecchhhHHHHHHHHHHhc
Q 005837 490 PGLE--EFLVDC--SGDQESDKTPET--------AFLNKKSALLQ----LIEKSPVSKTIVFCNKIVTCRKVENILKRFD 553 (675)
Q Consensus 490 ~~i~--~~~~~~--~~~~~~~~~~~~--------~~~~k~~~l~~----ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~ 553 (675)
+..+ ..+... .........++. ...-.+.+|.. ..+.....++|||..+.+.++.-++.|....
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 0000 000000 000000000000 00012333333 3344556799999999999999888886643
Q ss_pred cc-----------------CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCC
Q 005837 554 RK-----------------ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616 (675)
Q Consensus 554 ~~-----------------~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p 616 (675)
.. ..+.+++.+||+|+|++|..+++.|...... ||+||++++||+|+|+|++||.||.|
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~----VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA----VLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce----EEEehhhhhccCCCCCcCeEEEeCCC
Confidence 21 1126799999999999999999999998877 99999999999999999999999999
Q ss_pred CCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 617 ~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
.+.++|+||+||+.| +|..|.+++|+.|.+.++...+..
T Consensus 526 ~s~adylHRvGRTAR-aG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 526 FSTADYLHRVGRTAR-AGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred CCHHHHHHHhhhhhh-ccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999 899999999999999997766544
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-52 Score=437.37 Aligned_cols=385 Identities=29% Similarity=0.489 Sum_probs=303.4
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhh--ccCCC
Q 005837 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQ--GLSKS 341 (675)
Q Consensus 265 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~--~~~~~ 341 (675)
.+...|.++.++.+++++|..+||..|+++|..+||+++.| .|++-.|.|||||||+|-+|+++.+.+.... .+...
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34467999999999999999999999999999999999998 7999999999999999999999854331100 01111
Q ss_pred CCCCC--EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc---
Q 005837 342 TSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--- 416 (675)
Q Consensus 342 ~~~~~--~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~--- 416 (675)
...++ ..||++||||||.|+.+.+..+... .++++..++||.....+.+.++..++|+|+||++|+.++++...
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 22334 4999999999999999999998875 78999999999999999999999999999999999999987544
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCC-----CCccEEEEecCCCHHHHHHHHH-----------------h-
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSP-----VTAQYLFVTATLPVEIYNKLVE-----------------V- 473 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-----~~~qiI~lSAT~~~~v~~~l~~-----------------~- 473 (675)
.+.+++++|+||+|+|. ..++-..+..|++.+. ...|.++||||++......+.. +
T Consensus 337 ~~k~vkcLVlDEaDRmv-ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMV-EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhceEEEEccHHHHh-hhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 57789999999999999 5565566666665543 4679999999985322221111 1
Q ss_pred -----CCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHH
Q 005837 474 -----FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548 (675)
Q Consensus 474 -----~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~ 548 (675)
...+.++-..........+..-.+.|... ++.-.|..+|..++ +++|||||++..+.+++-.
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~------------eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~ 482 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPL------------EKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVL 482 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCcc------------ccceeEEEEEeecC-CceEEEechHHHHHHHHHH
Confidence 11222222111111111111222222211 12222333344444 7999999999999999999
Q ss_pred HHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcc
Q 005837 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628 (675)
Q Consensus 549 L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 628 (675)
|..+. +..+.+|+.|.|.+|.+.+++|++.... |||||++++||+|||+|.|||||..|.+.+-|+||+||
T Consensus 483 L~~L~-----i~p~~LHA~M~QKqRLknLEkF~~~~~~----VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGR 553 (731)
T KOG0347|consen 483 LNNLD-----IPPLPLHASMIQKQRLKNLEKFKQSPSG----VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGR 553 (731)
T ss_pred HhhcC-----CCCchhhHHHHHHHHHHhHHHHhcCCCe----EEEeehhhhccCCCCCcceEEEeecCCccceeEecccc
Confidence 99876 7788999999999999999999998877 99999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCChhhhcc
Q 005837 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674 (675)
Q Consensus 629 agR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~~~e~m 674 (675)
+.| ++..|..++|+.|.++..+.+|...+.+...+.-+|....+|
T Consensus 554 TAR-A~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m 598 (731)
T KOG0347|consen 554 TAR-ANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIM 598 (731)
T ss_pred ccc-ccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHH
Confidence 999 799999999999999999999999998888777777765555
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.5e-49 Score=452.73 Aligned_cols=339 Identities=19% Similarity=0.266 Sum_probs=269.8
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 005837 273 LGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (675)
Q Consensus 273 ~~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl 351 (675)
+.+...+...++. +|+..|+++|.++|++++.|+|+|++||||+|||+||++|++.. ++.+|||
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------------~GiTLVI 506 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------------PGITLVI 506 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------CCcEEEE
Confidence 4455677777755 79999999999999999999999999999999999999999832 4589999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh------CCCcEEEeCHHHHHH---HHHh--ccccccc
Q 005837 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ------EGVDVLIATPGRFMF---LIKE--GILQLIN 420 (675)
Q Consensus 352 ~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~------~~~~IlV~Tp~~L~~---~l~~--~~~~l~~ 420 (675)
+|+++|+.++...+... ++....+.++.....+...+. ..++|||+|||+|.. ++.. .......
T Consensus 507 SPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred eCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999877776653 467788888877665544332 468999999999852 2221 1112345
Q ss_pred ceEEEEcCcccccC-CccHHHHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhCCC-CeEEeCCCccccCCCceEEE
Q 005837 421 LRCAILDEVDILFN-DEDFEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFL 496 (675)
Q Consensus 421 i~~IVIDEaH~l~~-~~~~~~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~~~~ 496 (675)
+.+|||||||++++ +++|++.++.+ +....+..|++++|||++..+..++...+.. ...++...+.+ +++...+
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R--pNL~y~V 659 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR--PNLWYSV 659 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc--cceEEEE
Confidence 88999999999986 57799988875 5555568899999999999998888776642 22233333332 3333222
Q ss_pred EecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHH
Q 005837 497 VDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~ 575 (675)
.... ......+..++.. ....++||||.++++|+.++..|...+ +.+..|||+|++++|..
T Consensus 660 v~k~-------------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G-----ika~~YHAGLs~eeR~~ 721 (1195)
T PLN03137 660 VPKT-------------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG-----HKAAFYHGSMDPAQRAF 721 (1195)
T ss_pred eccc-------------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC-----CCeeeeeCCCCHHHHHH
Confidence 2110 0123445566654 346689999999999999999998866 88999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHH
Q 005837 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 576 v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
+++.|..|+++ |||||++++||||+|+|++||||++|+|++.|+||+||||| +|.+|.|++||...|....+.++
T Consensus 722 vqe~F~~Gei~----VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGR-DG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 722 VQKQWSKDEIN----IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR-DGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred HHHHHhcCCCc----EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCC-CCCCceEEEEecHHHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999999999999999 89999999999999988888777
Q ss_pred H
Q 005837 656 E 656 (675)
Q Consensus 656 ~ 656 (675)
.
T Consensus 797 ~ 797 (1195)
T PLN03137 797 S 797 (1195)
T ss_pred h
Confidence 5
No 30
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-49 Score=403.69 Aligned_cols=361 Identities=28% Similarity=0.462 Sum_probs=309.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|++++|.+.+++++.+.||.+|+.+|..+||.++.|+|++..|.||||||.+|++|+++.+...+..+ ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---DGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---cccccce
Confidence 5899999999999999999999999999999999999999999999999999999999999998865332 3456889
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCC-CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc-cccccceEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAI 425 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~-~~l~~i~~IV 425 (675)
++|++||+|||+|++..+.++...+. .+++.-+..+.+.......+...++|+|+||++++.++..+. ..+..++++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999999865433 567777776666666667788889999999999999998766 6788899999
Q ss_pred EcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCc-cccCCCceEEEEecCCCCC
Q 005837 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM-HRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 426 IDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~ 504 (675)
+||||.++ ..+|..+++.+...+|+..|.++||||+..++...-.-++.++.++..... ...+..+.++.+.|...
T Consensus 176 vDEADLll-sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~-- 252 (569)
T KOG0346|consen 176 VDEADLLL-SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEE-- 252 (569)
T ss_pred echhhhhh-hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccc--
Confidence 99999999 799999999999999999999999999998887544444455555433222 22335677888888743
Q ss_pred CCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC
Q 005837 505 SDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS 583 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g 583 (675)
+|+..+..+++. .-.+++|||+|+++.|.++.-.|+..+ ++.+.+++.|+..-|.-++++|..|
T Consensus 253 ----------DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG-----iksciLNseLP~NSR~Hii~QFNkG 317 (569)
T KOG0346|consen 253 ----------DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG-----IKSCILNSELPANSRCHIIEQFNKG 317 (569)
T ss_pred ----------hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC-----cHhhhhcccccccchhhHHHHhhCc
Confidence 477777766654 336899999999999999999999987 8889999999999999999999999
Q ss_pred CCCCCceEEEEcc-----------------------------------cccccCCCCCcCEEEEcCCCCCHHHHHHHhcc
Q 005837 584 RSKEARLFLVCTD-----------------------------------RASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628 (675)
Q Consensus 584 ~~~~~~~VLVaT~-----------------------------------~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 628 (675)
-++ ++|||+ -.+||||+..|..|||||+|.+...|+||+||
T Consensus 318 ~Yd----ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGR 393 (569)
T KOG0346|consen 318 LYD----IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGR 393 (569)
T ss_pred cee----EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccc
Confidence 999 999999 13589999999999999999999999999999
Q ss_pred cccCCCCccEEEEEEeCccHHHHHHH
Q 005837 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654 (675)
Q Consensus 629 agR~~g~~g~~i~~~~~~d~~~~~~l 654 (675)
++| ++++|.++.|+.+.+..-...|
T Consensus 394 TaR-g~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 394 TAR-GNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred ccc-CCCCCceEEEecchHHhhhhHH
Confidence 999 7999999999999887633333
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-47 Score=423.54 Aligned_cols=328 Identities=17% Similarity=0.283 Sum_probs=258.9
Q ss_pred HCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 285 ~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
.+||..|+|+|.++|+++++++|+++++|||+|||+||++|++. .++.+|||+|+++|+.|+.+.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------------~~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------------SDGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------------cCCcEEEEecHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999883 244799999999999999998
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHH---H-hhCCCcEEEeCHHHHHHHH-Hhccc-ccccceEEEEcCcccccC-Ccc
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLE---N-LQEGVDVLIATPGRFMFLI-KEGIL-QLINLRCAILDEVDILFN-DED 437 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~---~-l~~~~~IlV~Tp~~L~~~l-~~~~~-~l~~i~~IVIDEaH~l~~-~~~ 437 (675)
+..++ +....+.++........ . .....+|+|+||+++.... ....+ ...++++|||||||++.+ +++
T Consensus 71 l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 87653 45666666665443221 2 2345899999999986322 11112 567899999999999985 567
Q ss_pred HHHHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhh
Q 005837 438 FEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513 (675)
Q Consensus 438 ~~~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 513 (675)
|+..+..+ +....+..+++++|||++..+...+...+. .+... ...+.+ +++...+.....
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r--~nl~~~v~~~~~------------ 210 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFDR--PNLYYEVRRKTP------------ 210 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCC--CCcEEEEEeCCc------------
Confidence 88887765 333446789999999999998888777653 22222 222222 233222221110
Q ss_pred hhHHHHHHHHHH-hCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 514 LNKKSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 514 ~~k~~~l~~ll~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.....+..++. ...+..+||||+++++|+.++..|++.+ +.+..|||+|++++|.++++.|++|+++ ||
T Consensus 211 -~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-----~~~~~~H~~l~~~eR~~i~~~F~~g~~~----vL 280 (470)
T TIGR00614 211 -KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-----IAAGAYHAGLEISARDDVHHKFQRDEIQ----VV 280 (470)
T ss_pred -cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-----CCeeEeeCCCCHHHHHHHHHHHHcCCCc----EE
Confidence 23445556665 4556677999999999999999998865 7899999999999999999999999988 99
Q ss_pred EEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 593 VCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 593 VaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
|||+++++|||+|+|++||||++|+|++.|+||+||||| .|.+|.|++|+.+.|....+.++...
T Consensus 281 VaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR-~G~~~~~~~~~~~~d~~~~~~~~~~~ 345 (470)
T TIGR00614 281 VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR-DGLPSECHLFYAPADINRLRRLLMEE 345 (470)
T ss_pred EEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCC-CCCCceEEEEechhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999 89999999999999988888876643
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-48 Score=435.64 Aligned_cols=389 Identities=28% Similarity=0.479 Sum_probs=335.8
Q ss_pred cccCCCCCCCcccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHH
Q 005837 244 LQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~l 323 (675)
+...+..+|++. .+|.+.|++..++..++++|+.++++||.+|||+|++|+|+|.+|.||||||++|+
T Consensus 353 i~v~g~~~pkpv------------~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~ 420 (997)
T KOG0334|consen 353 IKVKGKECPKPV------------TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFL 420 (997)
T ss_pred eeeccCCCCccc------------chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhh
Confidence 445555555555 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeC
Q 005837 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIAT 403 (675)
Q Consensus 324 lp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~T 403 (675)
||++.|+...+ +.....||.+||++|||+|+.|+.++++.|.+. .++++++++|+.....++..++.++.|+|+|
T Consensus 421 LPmirhi~dQr----~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~t 495 (997)
T KOG0334|consen 421 LPMIRHIKDQR----PLEEGDGPIALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCT 495 (997)
T ss_pred cchhhhhhcCC----ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEec
Confidence 99998887643 233466999999999999999999999999986 8899999999999999999999999999999
Q ss_pred HHHHHHHHHhccc---ccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 404 PGRFMFLIKEGIL---QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 404 p~~L~~~l~~~~~---~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
|+++++++-.... .+.++.++|+||||+|+ +++|.+.+..|+..+++..|++++|||+|..+.......+..+..+
T Consensus 496 pGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf-dmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pvei 574 (997)
T KOG0334|consen 496 PGRMIDILCANSGRVTNLRRVTYLVLDEADRMF-DMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEI 574 (997)
T ss_pred cchhhhhHhhcCCccccccccceeeechhhhhh-eeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeE
Confidence 9999988876444 45556699999999999 9999999999999999999999999999999887777776655555
Q ss_pred eCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccCCCe
Q 005837 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559 (675)
Q Consensus 481 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~ 559 (675)
+..........+.+.+.-+.... .|+..|..+|... ...++||||.+.+.|..+.+.|.+.+ +
T Consensus 575 iv~~~svV~k~V~q~v~V~~~e~-----------eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag-----~ 638 (997)
T KOG0334|consen 575 IVGGRSVVCKEVTQVVRVCAIEN-----------EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAG-----Y 638 (997)
T ss_pred EEccceeEeccceEEEEEecCch-----------HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC-----c
Confidence 55555556667777776666433 5888888887653 47899999999999999999998766 7
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~ 639 (675)
.+..+||+.++.+|..+++.|+++... +||||+++++|+|++.+..|||||+|.-+++|+||.||+|| .|.+|.|
T Consensus 639 ~~~slHGgv~q~dR~sti~dfK~~~~~----LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr-agrkg~A 713 (997)
T KOG0334|consen 639 NCDSLHGGVDQHDRSSTIEDFKNGVVN----LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR-AGRKGAA 713 (997)
T ss_pred chhhhcCCCchHHHHhHHHHHhccCce----EEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc-CCcccee
Confidence 777799999999999999999999988 99999999999999999999999999999999999999999 7999999
Q ss_pred EEEEeCccHHHHHHHHHHhcCCCCCCCCChhhhc
Q 005837 640 FIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673 (675)
Q Consensus 640 i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~~~e~ 673 (675)
++|+.+.+..++..|.+.+.... ..+|..++.
T Consensus 714 vtFi~p~q~~~a~dl~~al~~~~--~~~P~~l~~ 745 (997)
T KOG0334|consen 714 VTFITPDQLKYAGDLCKALELSK--QPVPKLLQA 745 (997)
T ss_pred EEEeChHHhhhHHHHHHHHHhcc--CCCchHHHH
Confidence 99999999888888877763332 344444433
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.9e-46 Score=429.57 Aligned_cols=361 Identities=20% Similarity=0.214 Sum_probs=269.1
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 274 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
.+++.+.+.|.++||.+|+++|.++|+.+++|+|+++++|||||||+||++|+++.+.+. .++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcC
Confidence 378999999999999999999999999999999999999999999999999999998652 2569999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh----cccccccceEEEEcCc
Q 005837 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE----GILQLINLRCAILDEV 429 (675)
Q Consensus 354 tr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~----~~~~l~~i~~IVIDEa 429 (675)
|++|+.|+.+.++++.. .++++..+.|+... .+...+..+++|+|+||++|...+.. ....+.++++||||||
T Consensus 90 traLa~q~~~~l~~l~~--~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 90 TKALAADQLRAVRELTL--RGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred hHHHHHHHHHHHHHhcc--CCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999872 46778777777764 44455666799999999998643221 1123788999999999
Q ss_pred ccccCCccHHHHHH-------HHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCC
Q 005837 430 DILFNDEDFEVALQ-------SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502 (675)
Q Consensus 430 H~l~~~~~~~~~l~-------~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~ 502 (675)
|.+.+ .|...+. .+....+...|++++|||++.... ....++.....++.... .......+.+.....
T Consensus 167 h~~~g--~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~--~~~~~~~~~~~~p~~ 241 (742)
T TIGR03817 167 HSYRG--VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDG--SPRGARTVALWEPPL 241 (742)
T ss_pred hhccC--ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCC--CCcCceEEEEecCCc
Confidence 99973 3444333 333445667899999999987653 34455554433332211 111112222111110
Q ss_pred CCC-----CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc---CCCeeEEEecCCCCHHHHH
Q 005837 503 QES-----DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK---ETRVRVLPFHAALDQETRL 574 (675)
Q Consensus 503 ~~~-----~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~---~~~~~v~~lhg~m~~~eR~ 574 (675)
... ..........+...+..++.. +.++||||+|++.|+.++..|++.... .....+..|||+|++++|.
T Consensus 242 ~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 242 TELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred cccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHH
Confidence 000 000011122355556666654 468999999999999999998774211 1125688999999999999
Q ss_pred HHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeC--ccHHHHH
Q 005837 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG--KQVSLAQ 652 (675)
Q Consensus 575 ~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~--~d~~~~~ 652 (675)
++++.|++|+++ +||||+++++|||+|++++||+|++|.++.+|+||+||||| .|..|.+++++.. .|..+..
T Consensus 320 ~ie~~f~~G~i~----vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR-~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 320 ELERALRDGELL----GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGR-RGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHHHcCCce----EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCC-CCCCcEEEEEeCCChHHHHHHh
Confidence 999999999998 99999999999999999999999999999999999999999 7999999998863 3444455
Q ss_pred HHHHHhc
Q 005837 653 RIMERNR 659 (675)
Q Consensus 653 ~l~~~~~ 659 (675)
.+.....
T Consensus 395 ~~~~~~~ 401 (742)
T TIGR03817 395 HPEALFD 401 (742)
T ss_pred CHHHHhc
Confidence 4443333
No 34
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.8e-46 Score=423.13 Aligned_cols=334 Identities=20% Similarity=0.324 Sum_probs=261.7
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 277 DYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 277 ~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
....+.|++ +||..|+++|.++++.+++|+|+++++|||+|||+||++|++.. .+.+|||+|++
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisPl~ 75 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSPLI 75 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEecHH
Confidence 333445544 69999999999999999999999999999999999999999832 34799999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---Hh-hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc
Q 005837 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (675)
Q Consensus 356 ~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~ 431 (675)
+|+.|+.+.++.++ +....+.++........ .+ ....+|+|+||+++........+...++++|||||||+
T Consensus 76 sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 76 SLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 99999999988753 44555666555443322 22 24589999999998732222233455789999999999
Q ss_pred ccC-CccHHHHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 432 LFN-DEDFEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 432 l~~-~~~~~~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
+.+ +++|++.++.+ +....+..+++++|||++..+...+...+. ++.. ....+.+ +++.......
T Consensus 151 i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~~~r--~nl~~~v~~~------- 220 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISSFDR--PNIRYTLVEK------- 220 (607)
T ss_pred cccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECCCCC--Ccceeeeeec-------
Confidence 985 46788877666 233345789999999999988777666542 2222 2222222 2222221110
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
......+..++....+.++||||+++++|+.++..|+..+ +.+..|||+|++++|.++++.|+.|+.+
T Consensus 221 -------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g-----~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 221 -------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG-----ISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred -------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC-----CCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 0234456667777778899999999999999999999865 7899999999999999999999999988
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
|||||+++++|||+|+|++||||++|.|+++|+||+||||| .|.+|.|++|+.+.|...+++++..
T Consensus 289 ----VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR-~G~~~~~ill~~~~d~~~~~~~~~~ 354 (607)
T PRK11057 289 ----IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR-DGLPAEAMLFYDPADMAWLRRCLEE 354 (607)
T ss_pred ----EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccC-CCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999 7999999999999998888777653
No 35
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-46 Score=410.85 Aligned_cols=332 Identities=19% Similarity=0.300 Sum_probs=265.3
Q ss_pred HHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 281 ~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
..|++ +|+..+++-|.++|..+++++|+++.+|||+|||+||++|++- ..+.+|||+|..+|+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll---------------~~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALL---------------LEGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHh---------------cCCCEEEECchHHHHH
Confidence 44555 6899999999999999999999999999999999999999982 2448999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEECCcchHHHH---HHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-
Q 005837 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN- 434 (675)
Q Consensus 360 Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~---~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~- 434 (675)
++.+.++..+ +.+..+.+..+..+.. ..+. ...++++.+||+|..-.....+.-..+.++|||||||+++
T Consensus 72 DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 72 DQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhc
Confidence 9999999864 4556665554444432 2222 3489999999999743322233456788999999999998
Q ss_pred CccHHHHHHHHHh--hCCCCccEEEEecCCCHHHHHHHHHhCCC-CeEEeCCCccccCCCceEEEEecCCCCCCCCchhh
Q 005837 435 DEDFEVALQSLIS--SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511 (675)
Q Consensus 435 ~~~~~~~l~~il~--~~~~~~qiI~lSAT~~~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 511 (675)
+++|++.|..+-. ...++.+++++|||.++.+..++...+.- ...++...+.+ +++...+....
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR--pNi~~~v~~~~----------- 213 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR--PNLALKVVEKG----------- 213 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC--chhhhhhhhcc-----------
Confidence 8899999998843 33348999999999999999999888742 22333333333 33322222111
Q ss_pred hhhhHHHHHHHHH--HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 005837 512 AFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589 (675)
Q Consensus 512 ~~~~k~~~l~~ll--~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~ 589 (675)
+-...+..+. .....+..||||.|++.++.+++.|...+ +.+..||++|+.++|..+.++|..++++
T Consensus 214 ---~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g-----~~a~~YHaGl~~~eR~~~q~~f~~~~~~--- 282 (590)
T COG0514 214 ---EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG-----ISAGAYHAGLSNEERERVQQAFLNDEIK--- 282 (590)
T ss_pred ---cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC-----CceEEecCCCCHHHHHHHHHHHhcCCCc---
Confidence 0111222222 24556779999999999999999999875 8999999999999999999999999998
Q ss_pred eEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 590 LFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 590 ~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
|+|||.+|+||||.|+|++||||++|.|+++|+|.+||||| +|.++.|++||++.|....+.+++..
T Consensus 283 -iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGR-DG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 283 -VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGR-DGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred -EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccC-CCCcceEEEeeccccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 89999999999999988888777654
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-46 Score=379.48 Aligned_cols=370 Identities=26% Similarity=0.474 Sum_probs=328.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|++++|++++++.++.+||.+|+.+|+.||..+..|.|+++++++|+|||.+|.+++++.+.-. .....
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~---------~ke~q 96 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS---------VKETQ 96 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc---------hHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999987432 22447
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH-hhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN-LQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~-l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+|+++|+++|+.|..+....++.. .++++..+.|+.....+... ....++|+++||+++.+++....+....++++|+
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 999999999999999888888775 66888889998887755444 4456899999999999999988888888999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||+|.++ ..+|...+..++..++.+.|++++|||.|.++.....++..++..+...........+.++++.....
T Consensus 176 DEaDEmL-s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~---- 250 (397)
T KOG0327|consen 176 DEADEML-SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE---- 250 (397)
T ss_pred cchHhhh-ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc----
Confidence 9999999 89999999999999999999999999999999988777777777777666666666777777765544
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
.|+..+..+.+ .-.+.+||||+++.+..+...|...+ +.+..+|++|.+.+|..++++|+.|..+
T Consensus 251 --------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~-----~~~s~~~~d~~q~~R~~~~~ef~~gssr 315 (397)
T KOG0327|consen 251 --------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG-----FTVSAIHGDMEQNERDTLMREFRSGSSR 315 (397)
T ss_pred --------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC-----ceEEEeecccchhhhhHHHHHhhcCCce
Confidence 27888888887 45689999999999999999997665 8899999999999999999999999988
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~ 666 (675)
|||.|+.+++|+|+..+..||+|++|...++|+||+||+|| .|.+|.++.|+...+...++++.+.+. .++.+
T Consensus 316 ----vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr-~grkg~~in~v~~~d~~~lk~ie~~y~--~~i~e 388 (397)
T KOG0327|consen 316 ----VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGR-FGRKGVAINFVTEEDVRDLKDIEKFYN--TPIEE 388 (397)
T ss_pred ----EEeeccccccccchhhcceeeeeccccchhhhhhhcccccc-cCCCceeeeeehHhhHHHHHhHHHhcC--Cccee
Confidence 99999999999999999999999999999999999999999 899999999999999999999987655 56688
Q ss_pred CChhhhcc
Q 005837 667 VPSAFELM 674 (675)
Q Consensus 667 l~~~~e~m 674 (675)
+|.++..+
T Consensus 389 ~p~~~~~l 396 (397)
T KOG0327|consen 389 LPSNFADL 396 (397)
T ss_pred cccchhhc
Confidence 88876543
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2e-45 Score=420.71 Aligned_cols=329 Identities=22% Similarity=0.336 Sum_probs=264.1
Q ss_pred HHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 282 SLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 282 ~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
.|++ +||..|+++|.++|+++++|+|++++||||+|||+||++|++. .++.++||+|+++|+.|
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------------~~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------------LKGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------------cCCcEEEEcCCHHHHHH
Confidence 3444 7999999999999999999999999999999999999999883 23478999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHHHH----HhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-C
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE----NLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN-D 435 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~----~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~-~ 435 (675)
+++.++.++ +.+..+.++........ ......+|+++||+++........+...++++|||||||++.. +
T Consensus 69 q~~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 69 QVDQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999998753 45667777766554332 2235689999999999743333344567899999999999985 5
Q ss_pred ccHHHHHHHHHh--hCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEecCCCCCCCCchhh
Q 005837 436 EDFEVALQSLIS--SSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511 (675)
Q Consensus 436 ~~~~~~l~~il~--~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 511 (675)
++|++.+..+.. ...+..+++++|||++..+...+...+. +...+. ..+.+ +++.......
T Consensus 144 ~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r--~nl~~~v~~~------------ 208 (591)
T TIGR01389 144 HDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TSFDR--PNLRFSVVKK------------ 208 (591)
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCC--CCcEEEEEeC------------
Confidence 788888777643 2234567999999999999888877663 222222 22222 2232222211
Q ss_pred hhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceE
Q 005837 512 AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLF 591 (675)
Q Consensus 512 ~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~V 591 (675)
..+...+..++....+.++||||+++++|+.+++.|...+ +.+..|||+|+.++|..+++.|.+|.++ |
T Consensus 209 --~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g-----~~~~~~H~~l~~~~R~~i~~~F~~g~~~----v 277 (591)
T TIGR01389 209 --NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG-----ISALAYHAGLSNKVRAENQEDFLYDDVK----V 277 (591)
T ss_pred --CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC-----CCEEEEECCCCHHHHHHHHHHHHcCCCc----E
Confidence 1245567777777767899999999999999999998765 7889999999999999999999999988 9
Q ss_pred EEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 592 LVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 592 LVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
||||+++++|||+|+|++||||++|.|++.|+||+||||| .|..+.|++||.+.|...++.+++.
T Consensus 278 lVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR-~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 278 MVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR-DGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred EEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC-CCCCceEEEecCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999 8999999999999998887777653
No 38
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-46 Score=397.53 Aligned_cols=357 Identities=28% Similarity=0.430 Sum_probs=321.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
..|+++.|..+++..|+..+|..|+++|..|||+++.+.|+||++..|+|||++|...+++.+..+ ...++
T Consensus 25 ~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------~~~~q 95 (980)
T KOG4284|consen 25 PGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------SSHIQ 95 (980)
T ss_pred CCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---------cCcce
Confidence 578999999999999999999999999999999999999999999999999999999888777432 45779
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
++|++|||+++-|+...+.+++....++++.++.||+.......+++. ++|+|+||++|..+.+...++...++++|+|
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 999999999999999999999886678999999999988877666654 7899999999999999999999999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||.+.+...|...+..|+..+|...|++++|||.|..+-+.+.+++.++..+...........++++++.......
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn--- 251 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN--- 251 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc---
Confidence 99999966899999999999999999999999999999999999999888777776666666778888776654322
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
....+..|+..|-++++..+..+.||||+....|+-++.+|...+ +.+-++.|.|++.+|..+++.++.-..+
T Consensus 252 -sveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG-----~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r- 324 (980)
T KOG4284|consen 252 -SVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSG-----LDVTFISGAMSQKDRLLAVDQLRAFRVR- 324 (980)
T ss_pred -hHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccC-----CCeEEeccccchhHHHHHHHHhhhceEE-
Confidence 223344588888899999999999999999999999999998866 8899999999999999999999988776
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
|||+|+..+||||-++|+.|||.|.|-+.+.|.|||||||| .|..|.+++|+.....
T Consensus 325 ---ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgR-FG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ---ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGR-FGAHGAAVTLLEDERE 381 (980)
T ss_pred ---EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccc-ccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999 8999999999886553
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-45 Score=381.99 Aligned_cols=369 Identities=27% Similarity=0.420 Sum_probs=287.4
Q ss_pred ccccccCCCHHHH----------HHHHHCCCCCChHHHHHHhhhhhc---------CCCEEEEccCCCCchHHHHHHHHH
Q 005837 268 KSFKELGCSDYMI----------ESLKRQNFLRPSQIQAMAFPPVVE---------GKSCILADQSGSGKTLAYLLPVIQ 328 (675)
Q Consensus 268 ~~f~~~~l~~~l~----------~~l~~~g~~~~~~iQ~~~i~~il~---------g~dvii~apTGsGKTl~~llp~l~ 328 (675)
+.|+.++++..+. ..+.++++.+..|+|..++|+++. .+|+.+.||||||||+||.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 4566666665443 448889999999999999999863 479999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCC-----CcEEEeC
Q 005837 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-----VDVLIAT 403 (675)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~-----~~IlV~T 403 (675)
.+.... ...-++|||+|+++|+.|+++.+.++.. +.++.++.+.|..+...+...+... .||+|+|
T Consensus 207 ~L~~R~--------v~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRP--------VKRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCC--------ccceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 997754 3346999999999999999999999976 4788899999998888777666542 4999999
Q ss_pred HHHHHHHHHh-cccccccceEEEEcCcccccCCccHHHHHHHHHhhCC--------------------------------
Q 005837 404 PGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP-------------------------------- 450 (675)
Q Consensus 404 p~~L~~~l~~-~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-------------------------------- 450 (675)
|++|.+++++ +.+.+++++++||||||+|+ +..|...+-.++..+.
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll-~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~ 356 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLL-DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGK 356 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHH-HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCC
Confidence 9999999985 77899999999999999998 5566555444432221
Q ss_pred --CCccEEEEecCCCHHHHHHHHHhCCCCeEEeC----CCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHH
Q 005837 451 --VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG----PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (675)
Q Consensus 451 --~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 524 (675)
++.+.+++|||+...-.....-.+..+..... ......+..+.+..+.+... .+.-.+..++
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~------------~kpl~~~~lI 424 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK------------FKPLAVYALI 424 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc------------cchHhHHHHH
Confidence 22345666777643221111111122211111 12333334444444333221 3556677888
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHH-HhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCC
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILK-RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGID 603 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~-~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiD 603 (675)
......++|+|+++...+.+++..|+ .++. .+.++-.+.|.++.+.|.+.++.|..|+++ |||||++++||||
T Consensus 425 ~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~--~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~----vLIcSD~laRGiD 498 (620)
T KOG0350|consen 425 TSNKLNRTLCFVNSVSSANRLAHVLKVEFCS--DNFKVSEFTGQLNGKRRYKMLEKFAKGDIN----VLICSDALARGID 498 (620)
T ss_pred HHhhcceEEEEecchHHHHHHHHHHHHHhcc--ccchhhhhhhhhhHHHHHHHHHHHhcCCce----EEEehhhhhcCCc
Confidence 88888899999999999999999998 4432 336677799999999999999999999999 9999999999999
Q ss_pred CCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCC
Q 005837 604 FAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 604 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~ 665 (675)
+.+|+.||+||+|.+...|+||+||++| +|+.|.|+.+....+...+.++++........+
T Consensus 499 v~~v~~VINYd~P~~~ktyVHR~GRTAR-Agq~G~a~tll~~~~~r~F~klL~~~~~~d~~~ 559 (620)
T KOG0350|consen 499 VNDVDNVINYDPPASDKTYVHRAGRTAR-AGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVE 559 (620)
T ss_pred ccccceEeecCCCchhhHHHHhhccccc-ccCCceEEEeeccccchHHHHHHHHhcccCCcc
Confidence 9999999999999999999999999999 899999999999999999999988777644433
No 40
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=374.94 Aligned_cols=412 Identities=18% Similarity=0.293 Sum_probs=312.2
Q ss_pred hhhcccccCCCCCCccccccccccccccccccccCccccCCCCCCCcccccccCCCCCCCcccccCCCCCcccccccccc
Q 005837 194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273 (675)
Q Consensus 194 ~~~~~el~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 273 (675)
..+.+||++.+.|...+|.+++++..++.+....+..+.++..-. ..++.+..... .+.....-++ -+++
T Consensus 7 s~ls~el~~i~~ei~~id~qiqel~~kkqel~qkkk~i~kkielk------~~edsdag~~~-eyd~spaawd---kd~f 76 (695)
T KOG0353|consen 7 SALSEELADIDGEIGAIDIQIQELREKKQELIQKKKAIEKKIELK------CLEDSDAGASN-EYDRSPAAWD---KDDF 76 (695)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hcccccccccc-cccCCccccc---cCCC
Confidence 456789999999999999999999988876665555444332200 00111100000 0000000011 1345
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 274 GCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 274 ~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
+++.+..+.|++ +.+.+++|.|..+|++.++++++++++|||.||++||++|++ ...+.+||||
T Consensus 77 pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal---------------~adg~alvi~ 141 (695)
T KOG0353|consen 77 PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL---------------CADGFALVIC 141 (695)
T ss_pred CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH---------------hcCCceEeec
Confidence 577777777755 578899999999999999999999999999999999999998 3466899999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH------HHHhhCCCcEEEeCHHHHHH---HHH--hcccccccc
Q 005837 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ------LENLQEGVDVLIATPGRFMF---LIK--EGILQLINL 421 (675)
Q Consensus 353 Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~------~~~l~~~~~IlV~Tp~~L~~---~l~--~~~~~l~~i 421 (675)
|..+|++++.-+++.++.. ...+...++..+. +........++++||+++.. ++. .+.+....+
T Consensus 142 plislmedqil~lkqlgi~-----as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQLGID-----ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHHHhCcc-----hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 9999999999999998753 2233333332221 11223458899999999963 222 245677889
Q ss_pred eEEEEcCcccccC-CccHHHHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhCC-CCeEEeCCCccccCCCceEEEE
Q 005837 422 RCAILDEVDILFN-DEDFEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLV 497 (675)
Q Consensus 422 ~~IVIDEaH~l~~-~~~~~~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~-~~~~i~~~~~~~~~~~i~~~~~ 497 (675)
.+|.|||+||+.+ +++|++++..+ ++...+..++|++|||.+..+..+...++. .....+..++++ +++.+.+.
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr--~nl~yev~ 294 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNR--PNLKYEVR 294 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCC--CCceeEee
Confidence 9999999999998 89999987765 677778999999999999999988888764 233455555555 45555555
Q ss_pred ecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHH
Q 005837 498 DCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v 576 (675)
..++... +..+.+..+++. ..+...||||.++++|+.++..|+.++ +....||+.|.+++|..+
T Consensus 295 qkp~n~d----------d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g-----i~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 295 QKPGNED----------DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG-----IHAGAYHANLEPEDKSGA 359 (695)
T ss_pred eCCCChH----------HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC-----ccccccccccCccccccc
Confidence 4444321 345556666654 457789999999999999999999887 889999999999999999
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHH--------------------------------
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR-------------------------------- 624 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Q-------------------------------- 624 (675)
++.|..|+++ |+|||-++++|||.|+|++|||+.+|+|+++|+|
T Consensus 360 hq~w~a~eiq----vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctn 435 (695)
T KOG0353|consen 360 HQGWIAGEIQ----VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTN 435 (695)
T ss_pred cccccccceE----EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhcc
Confidence 9999999999 9999999999999999999999999999999999
Q ss_pred -----------HhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 625 -----------RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 625 -----------r~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
..||||| ++.++.|++||.-.|.-....+...
T Consensus 436 fkiffavfsekesgragr-d~~~a~cilyy~~~difk~ssmv~~ 478 (695)
T KOG0353|consen 436 FKIFFAVFSEKESGRAGR-DDMKADCILYYGFADIFKISSMVQM 478 (695)
T ss_pred ceeeeeeecchhcccccc-CCCcccEEEEechHHHHhHHHHHHH
Confidence 8999999 8999999999987776555544443
No 41
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-45 Score=372.85 Aligned_cols=362 Identities=31% Similarity=0.464 Sum_probs=325.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
-.|..+||+..+++++.+.||+.|+|+|++.+|.++++++++..+-||||||.||++||++++.... ..+.+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~R 92 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGLR 92 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------ccccc
Confidence 4799999999999999999999999999999999999999999999999999999999999997753 34679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+++++||++|+.|..+.++.+++. ..++..+++|+.+..+++..+..++|||++||+++..+.-.-.+.++.+.|+|+|
T Consensus 93 alilsptreLa~qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccc-cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 999999999999999999999985 7899999999999999999999999999999999998877767889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|+|.+. .++|...+..++..++...|.++||||+|..+..+...-+.++..+.......+...+...+..+...
T Consensus 172 Eadrlf-emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a----- 245 (529)
T KOG0337|consen 172 EADRLF-EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA----- 245 (529)
T ss_pred hhhHHH-hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH-----
Confidence 999999 89999999999999999999999999999999888887777766666555556666666655555443
Q ss_pred chhhhhhhHHHHHHHHHHhCC-CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~-~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
+|...|+.++.... ..+++|||.+...++.+...|+..+ +.+..+++.|++..|...+..|..++..
T Consensus 246 -------~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g-----~~~s~iysslD~~aRk~~~~~F~~~k~~ 313 (529)
T KOG0337|consen 246 -------EKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG-----GEGSDIYSSLDQEARKINGRDFRGRKTS 313 (529)
T ss_pred -------HHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC-----CCccccccccChHhhhhccccccCCccc
Confidence 58888888887654 4679999999999999999999876 6777889999999999999999999888
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~ 661 (675)
+||.|+++++|+|+|-.+.||+||+|.+..-|+||+||+.| +|..|.+|.|+.+++..+.-.|...+.+.
T Consensus 314 ----~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~ar-agrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 314 ----ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVAR-AGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ----eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhh-ccccceEEEEEecccchhhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999 79999999999999988888776665543
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-43 Score=374.25 Aligned_cols=372 Identities=28% Similarity=0.417 Sum_probs=301.9
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 273 ~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
+.+...+++.+...+|..|+++|.+++|.++.+++++.|+|||+|||++|.+|+++++..... .....|-+++|+.
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----~~~~~gl~a~Il~ 216 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----EKHKVGLRALILS 216 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----ccCccceEEEEec
Confidence 567888999999999999999999999999999999999999999999999999999987542 2334567999999
Q ss_pred CcHHHHHHHHHHHHHhhcC-CCCceEEEEECCcch-HHHHHHhhCCCcEEEeCHHHHHHHHHhcc--cccccceEEEEcC
Q 005837 353 PTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDE 428 (675)
Q Consensus 353 Ptr~La~Q~~~~l~~l~~~-~~~~~v~~l~gg~~~-~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~--~~l~~i~~IVIDE 428 (675)
|+++|+.|+++++.++... +...++..+...... ..........++|+++||-++...+.... ..+..+.++|+||
T Consensus 217 ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dE 296 (593)
T KOG0344|consen 217 PTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDE 296 (593)
T ss_pred chHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeech
Confidence 9999999999999998721 223333333332111 11122233458999999999998888754 6789999999999
Q ss_pred cccccCCccHHHHHHHHHhhCC-CCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 429 VDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il~~~~-~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
+|.+.....|..++..|+..+. ++..+-+||||.+..+.++......+...+....-......+.+-.+-+....
T Consensus 297 aD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~---- 372 (593)
T KOG0344|consen 297 ADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK---- 372 (593)
T ss_pred HHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch----
Confidence 9999943388888888877664 45677789999999998888776665555544443344445555544444432
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
.|+.++.+++...-..+++||+.+.+.|.+|...|.. ..++.+..+||+.++.+|.+++++|+.|++.
T Consensus 373 -------~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~----~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw- 440 (593)
T KOG0344|consen 373 -------GKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI----YDNINVDVIHGERSQKQRDETMERFRIGKIW- 440 (593)
T ss_pred -------hHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh----ccCcceeeEecccchhHHHHHHHHHhccCee-
Confidence 5888899999888788999999999999999999962 2348899999999999999999999999998
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
||+||++++||+|+.+++.||+||+|.+..+|+||+||+|| +|+.|++++||+..+..+++.+.+-.++.. .+|
T Consensus 441 ---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgR-ag~~g~Aitfytd~d~~~ir~iae~~~~sG--~ev 514 (593)
T KOG0344|consen 441 ---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGR-AGRSGKAITFYTDQDMPRIRSIAEVMEQSG--CEV 514 (593)
T ss_pred ---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCC-CCCCcceEEEeccccchhhhhHHHHHHHcC--Ccc
Confidence 99999999999999999999999999999999999999999 899999999999999999998877544433 456
Q ss_pred Chh
Q 005837 668 PSA 670 (675)
Q Consensus 668 ~~~ 670 (675)
|.+
T Consensus 515 pe~ 517 (593)
T KOG0344|consen 515 PEK 517 (593)
T ss_pred hHH
Confidence 654
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-42 Score=405.43 Aligned_cols=354 Identities=19% Similarity=0.251 Sum_probs=262.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.|++++|++.+++.+.+.|+.+|+|+|.++++. +++++|+++++|||||||++|.+|+++++.. +++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------------~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------------GGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------------CCc
Confidence 478899999999999999999999999999998 7789999999999999999999999988843 458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+++.++++.. .++++..++|+...... .....+|+|+||+++..++++....++++++||||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 99999999999999999998754 36788889998765432 22457999999999999988755567899999999
Q ss_pred CcccccCCccHHHHHHHHHhh---CCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEe-----c
Q 005837 428 EVDILFNDEDFEVALQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD-----C 499 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~---~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~-----~ 499 (675)
|+|++. +.++...+..++.. ..+..|+|++|||++.. ..+..++.... +...... ..+...... .
T Consensus 145 E~H~l~-d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~--~~~~~rp--v~l~~~v~~~~~~~~ 217 (737)
T PRK02362 145 EVHLID-SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAEL--VDSEWRP--IDLREGVFYGGAIHF 217 (737)
T ss_pred CccccC-CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCc--ccCCCCC--CCCeeeEecCCeecc
Confidence 999998 56666666655433 35678999999999752 23333332111 1111000 011111100 0
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccC-----------------------
Q 005837 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE----------------------- 556 (675)
Q Consensus 500 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~----------------------- 556 (675)
...... ............+.+.+. .++++||||+++++|+.++..|.......
T Consensus 218 ~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 218 DDSQRE--VEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred cccccc--CCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 000000 000000112233333333 45789999999999999998887542100
Q ss_pred --------CCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC-----CCCCH
Q 005837 557 --------TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD-----FPRDP 619 (675)
Q Consensus 557 --------~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d-----~p~s~ 619 (675)
....++++||+|++.+|..+++.|++|.++ |||||+++++|+|+|++++||+ || .|.+.
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~----VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK----VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe----EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 013689999999999999999999999998 9999999999999999999997 66 57899
Q ss_pred HHHHHHhcccccCCC--CccEEEEEEeCcc--HHHHHHHH
Q 005837 620 SEYVRRVGRTARGAG--GTGKAFIFVVGKQ--VSLAQRIM 655 (675)
Q Consensus 620 ~~y~Qr~GRagR~~g--~~g~~i~~~~~~d--~~~~~~l~ 655 (675)
.+|+||+||||| .| ..|.|++++...+ ..++++++
T Consensus 370 ~~y~Qm~GRAGR-~g~d~~G~~ii~~~~~~~~~~~~~~~l 408 (737)
T PRK02362 370 LEYHQMAGRAGR-PGLDPYGEAVLLAKSYDELDELFERYI 408 (737)
T ss_pred HHHHHHhhcCCC-CCCCCCceEEEEecCchhHHHHHHHHH
Confidence 999999999999 44 4599999987643 23344444
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.5e-42 Score=405.33 Aligned_cols=355 Identities=23% Similarity=0.275 Sum_probs=251.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
+++.+.+.+.+ +|..|+++|.++|+.+++|+|+++++|||||||++|++|+++++...... .....++++|||+|+
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 45555555444 78899999999999999999999999999999999999999988753211 111346789999999
Q ss_pred HHHHHHHHHHHHH-------hh----cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc--ccccc
Q 005837 355 AELASQVLSNCRS-------LS----KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINL 421 (675)
Q Consensus 355 r~La~Q~~~~l~~-------l~----~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~--~l~~i 421 (675)
++|+.|+++.+.+ +. ....++++...+|+.........+...++|+|+||++|..++....+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999886653 11 11126788999999988877777788899999999999877765432 47889
Q ss_pred eEEEEcCcccccCCccH----HHHHHHHHhhCCCCccEEEEecCCCH--HHHHHHHHhC----CCCeEEeCCCccccCCC
Q 005837 422 RCAILDEVDILFNDEDF----EVALQSLISSSPVTAQYLFVTATLPV--EIYNKLVEVF----PDCKVVMGPGMHRISPG 491 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~----~~~l~~il~~~~~~~qiI~lSAT~~~--~v~~~l~~~~----~~~~~i~~~~~~~~~~~ 491 (675)
++|||||+|.+.+ ..+ ...+.++........|+|++|||+++ ++...+.... +....+...... ..
T Consensus 174 ~~VVIDE~H~l~~-~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~---k~ 249 (876)
T PRK13767 174 KWVIVDEIHSLAE-NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV---KP 249 (876)
T ss_pred CEEEEechhhhcc-CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC---cc
Confidence 9999999999983 333 33455555555567899999999975 2222221110 111112111110 01
Q ss_pred ceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc-CCCeeEEEecCCCCH
Q 005837 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK-ETRVRVLPFHAALDQ 570 (675)
Q Consensus 492 i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~v~~lhg~m~~ 570 (675)
.... +......................+..++.. .+++||||+|+..|+.++..|.+.... .....+..+||+|++
T Consensus 250 ~~i~-v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~ 326 (876)
T PRK13767 250 FDIK-VISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSR 326 (876)
T ss_pred ceEE-EeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCH
Confidence 1111 111100000000011111223344444443 468999999999999999999874321 122578999999999
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 571 ~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
++|..+++.|++|.++ |||||+++++|||+|++++||+++.|.++..|+||+||+||..|..+.++++..
T Consensus 327 ~~R~~ve~~fk~G~i~----vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 327 EVRLEVEEKLKRGELK----VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHHHHHHcCCCe----EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999988 999999999999999999999999999999999999999994354455554443
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-41 Score=396.72 Aligned_cols=358 Identities=22% Similarity=0.247 Sum_probs=266.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.|+++++++.+.+.+.+.|+..|+++|.++++. +++++|+++++|||||||++|.+|+++++... +++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----------~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----------GGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----------CCe
Confidence 477889999999999999999999999999986 78999999999999999999999999887542 458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+|||+|+++|+.|+++.+.++.. .++++..++|+......+ ...++|+|+||+++..++++....++++++||||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 99999999999999999988654 467888999987654332 2468999999999998888766668899999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|+|.+. +.++...+..++..+....|+|++|||++.. ..+..++.... +...... ..+...............
T Consensus 146 E~H~l~-~~~rg~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~--~~~~~rp--v~l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 146 EIHLIG-SYDRGATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL--VVSDWRP--VKLRKGVFYQGFLFWEDG 218 (720)
T ss_pred CcCccC-CccchHHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc--ccCCCCC--CcceeeEecCCeeeccCc
Confidence 999998 5677888888988888889999999999642 33444443211 1111111 011111110000000000
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc----------------------------CCCe
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK----------------------------ETRV 559 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~----------------------------~~~~ 559 (675)
............+.+.+. .++++||||+|++.|+.++..|...... ....
T Consensus 219 ~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 219 KIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred chhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 000000112233344444 3568999999999999888777432100 0113
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE-------cCCCC-CHHHHHHHhccccc
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL-------FDFPR-DPSEYVRRVGRTAR 631 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~-------~d~p~-s~~~y~Qr~GRagR 631 (675)
.++++|++|++++|..+++.|++|.++ |||||+++++|+|+|++++||. +++|. ++.+|.||+|||||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~----VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIK----VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCe----EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 589999999999999999999999998 9999999999999999999994 45543 57899999999999
Q ss_pred -CCCCccEEEEEEeCcc-HHHHHHHH
Q 005837 632 -GAGGTGKAFIFVVGKQ-VSLAQRIM 655 (675)
Q Consensus 632 -~~g~~g~~i~~~~~~d-~~~~~~l~ 655 (675)
+.+..|.+++++...+ ..++++++
T Consensus 373 ~~~d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 373 PKYDEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred CCcCCCceEEEEecCcchHHHHHHHH
Confidence 3457899999988755 34455554
No 46
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.1e-42 Score=394.75 Aligned_cols=338 Identities=18% Similarity=0.285 Sum_probs=272.5
Q ss_pred HHHHHHH-HHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 277 DYMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 277 ~~l~~~l-~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
+++...+ ..+|...+++-|.++|..++.|+|+++.+|||+||++||++|++ ..++.+|||.|.+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---------------l~~gitvVISPL~ 314 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---------------LLGGVTVVISPLI 314 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---------------ccCCceEEeccHH
Confidence 3445555 44799999999999999999999999999999999999999998 4466999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHhhC---CCcEEEeCHHHHHHH--HHhccccccc---ceEE
Q 005837 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE---GVDVLIATPGRFMFL--IKEGILQLIN---LRCA 424 (675)
Q Consensus 356 ~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l~~---~~~IlV~Tp~~L~~~--l~~~~~~l~~---i~~I 424 (675)
+|++++...+.. ..+....+.++.....+ +..+.. ..+|++.|||++... +......+.. +.++
T Consensus 315 SLm~DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~ 389 (941)
T KOG0351|consen 315 SLMQDQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALF 389 (941)
T ss_pred HHHHHHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEE
Confidence 999998877744 34667777777666533 233333 489999999999632 2222334444 8999
Q ss_pred EEcCcccccC-CccHHHHHHHHH--hhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEec
Q 005837 425 ILDEVDILFN-DEDFEVALQSLI--SSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDC 499 (675)
Q Consensus 425 VIDEaH~l~~-~~~~~~~l~~il--~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~ 499 (675)
|||||||..+ +|+|++.++.+. +...+.+++|++|||.+..+..++...+. ++ .++...+.+ +++...+...
T Consensus 390 vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~-~~~~~sfnR--~NL~yeV~~k 466 (941)
T KOG0351|consen 390 VIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNP-ELFKSSFNR--PNLKYEVSPK 466 (941)
T ss_pred EecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCc-ceecccCCC--CCceEEEEec
Confidence 9999999998 899999999883 44445689999999999999999988764 33 344444444 3444433332
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHH
Q 005837 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579 (675)
Q Consensus 500 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~ 579 (675)
.... .....+...-..++...+||||.++.+|++++..|+..+ +....||++|+..+|..|.+.
T Consensus 467 ~~~~-----------~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~-----~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 467 TDKD-----------ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG-----KSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred cCcc-----------chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc-----hhhHhhhcCCCHHHHHHHHHH
Confidence 2110 233334444455678899999999999999999999987 788999999999999999999
Q ss_pred HhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 580 F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
|..++++ |+|||-+|+||||.|+|++||||.+|+|++.|+|.+||||| +|....|++||...|...++.++...
T Consensus 531 w~~~~~~----VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGR-DG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 531 WMSDKIR----VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGR-DGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred HhcCCCe----EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCc-CCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999988 99999999999999999999999999999999999999999 89999999999999988888887765
No 47
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-41 Score=343.73 Aligned_cols=336 Identities=17% Similarity=0.249 Sum_probs=254.4
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 278 YMIESLKR-QNFLRP-SQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 278 ~l~~~l~~-~g~~~~-~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
.+.++|++ +|+..+ ++.|++++..+..+ +|+.++||||+||+|||+||+|. .++.+||++|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~---------------~~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV---------------HGGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH---------------hCCeEEEehHH
Confidence 34566655 576654 78999999998865 79999999999999999999983 35589999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH------HHHhhCCCcEEEeCHHHHHHHHH----hcccccccceEE
Q 005837 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ------LENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCA 424 (675)
Q Consensus 355 r~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~------~~~l~~~~~IlV~Tp~~L~~~l~----~~~~~l~~i~~I 424 (675)
.+|..++.+.+..+.-. +..+....+..+. +...+....+++.|||+-..... +....-..+++|
T Consensus 71 iALIkDQiDHL~~LKVp-----~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 71 IALIKDQIDHLKRLKVP-----CESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHhcCCc-----hhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 99999999999887432 2222222222222 12223468899999998652221 223344568899
Q ss_pred EEcCcccccC-CccHHHHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhC--CCCeEEeCCCccccCCCceEEEEec
Q 005837 425 ILDEVDILFN-DEDFEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDC 499 (675)
Q Consensus 425 VIDEaH~l~~-~~~~~~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~ 499 (675)
|+|||||+.+ +++|++++.++ ++..-...+.+++|||.+..+.+++...+ .++..++.....+.+ ++++.
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N-----LFYD~ 220 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN-----LFYDN 220 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh-----hhHHH
Confidence 9999999998 89999999888 45555688999999999999998886654 344444333222211 11110
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHh-------------CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecC
Q 005837 500 SGDQESDKTPETAFLNKKSALLQLIEK-------------SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566 (675)
Q Consensus 500 ~~~~~~~~~~~~~~~~k~~~l~~ll~~-------------~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg 566 (675)
. ......+-+..|.++... ...+..||||.|+++|++++-.|...+ +....||+
T Consensus 221 ~--------~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~G-----i~A~AYHA 287 (641)
T KOG0352|consen 221 H--------MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAG-----IPAMAYHA 287 (641)
T ss_pred H--------HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcC-----cchHHHhc
Confidence 0 000001122223332221 113678999999999999999998876 88889999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 567 ~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
++...+|.++.+.|.++++. ||+||..++||+|.|+|++|||+++|.++..|+|..||||| +|.+..|-+||+.+
T Consensus 288 GLK~~ERTeVQe~WM~~~~P----vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGR-DGk~SyCRLYYsR~ 362 (641)
T KOG0352|consen 288 GLKKKERTEVQEKWMNNEIP----VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGR-DGKRSYCRLYYSRQ 362 (641)
T ss_pred ccccchhHHHHHHHhcCCCC----EEEEEeccccccCCcceeEEEecCchhhhHHHHHhcccccc-CCCccceeeeeccc
Confidence 99999999999999999998 99999999999999999999999999999999999999999 89999999999999
Q ss_pred cHHHHHHHHH
Q 005837 647 QVSLAQRIME 656 (675)
Q Consensus 647 d~~~~~~l~~ 656 (675)
|..-+..|+.
T Consensus 363 D~~~i~FLi~ 372 (641)
T KOG0352|consen 363 DKNALNFLVS 372 (641)
T ss_pred chHHHHHHHh
Confidence 9988887765
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-40 Score=381.75 Aligned_cols=353 Identities=18% Similarity=0.237 Sum_probs=256.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
.|+++++++.+++.+...++. ++++|.++++.+.+++|+++++|||||||+++.+++++.+.. +.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCcE
Confidence 477889999999999998886 999999999999999999999999999999999999987753 3489
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcC
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDE 428 (675)
||++|+++|+.|+++.+.++.. .+.++...+|+...... ....++|+|+||+++..++.+....+.++++|||||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999988653 45778888887665432 224679999999999988887666688999999999
Q ss_pred cccccCCccHHHHHHHHH---hhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 429 VDILFNDEDFEVALQSLI---SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il---~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
+|++. +.++...+..++ ....+..|+|++|||++.. ..+..++.... +...... ..+.............
T Consensus 144 aH~l~-d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~--~~~~~r~--vpl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIG-DEDRGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL--IKSNFRP--VPLKLGILYRKRLILD 216 (674)
T ss_pred chhcc-CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc--cCCCCCC--CCeEEEEEecCeeeec
Confidence 99997 555555555554 3445678999999999743 23444443211 1111111 1111111111000000
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCC--------------------CeeEEEec
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET--------------------RVRVLPFH 565 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~--------------------~~~v~~lh 565 (675)
.. ..........+.+.+ ..++++||||+++++|+.++..|........ ...++++|
T Consensus 217 ~~--~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~h 292 (674)
T PRK01172 217 GY--ERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHH 292 (674)
T ss_pred cc--ccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEec
Confidence 00 000001111122222 2467899999999999999999876532111 12588999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCC---------CCCHHHHHHHhcccccCCC--
Q 005837 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF---------PRDPSEYVRRVGRTARGAG-- 634 (675)
Q Consensus 566 g~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~---------p~s~~~y~Qr~GRagR~~g-- 634 (675)
|+|++++|..+++.|++|.++ |||||+++++|+|+|+..+|| .+. |-+..+|.||+||||| .|
T Consensus 293 agl~~~eR~~ve~~f~~g~i~----VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR-~g~d 366 (674)
T PRK01172 293 AGLSNEQRRFIEEMFRNRYIK----VIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGR-PGYD 366 (674)
T ss_pred CCCCHHHHHHHHHHHHcCCCe----EEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCC-CCCC
Confidence 999999999999999999988 999999999999999865555 332 4578999999999999 44
Q ss_pred CccEEEEEEeCcc-HHHHHHHHH
Q 005837 635 GTGKAFIFVVGKQ-VSLAQRIME 656 (675)
Q Consensus 635 ~~g~~i~~~~~~d-~~~~~~l~~ 656 (675)
..|.+++++...+ ...+++++.
T Consensus 367 ~~g~~~i~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 367 QYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred CcceEEEEecCcccHHHHHHHHc
Confidence 5788888876544 566666654
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.2e-40 Score=372.45 Aligned_cols=345 Identities=22% Similarity=0.308 Sum_probs=273.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
|++.+.+.++.. |..||+.|.++|+.+.+|+|++++||||||||+++++|++..+.+.. ......+-.+|||+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 567778888777 99999999999999999999999999999999999999999998863 1122345789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc--ccccccceEEEEcCcccc
Q 005837 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--ILQLINLRCAILDEVDIL 432 (675)
Q Consensus 355 r~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~--~~~l~~i~~IVIDEaH~l 432 (675)
++|..++.+++..++.. .++.+.+.+|+++.....+..++++||+|+|||.|.-++... .-.+.+++++||||+|.+
T Consensus 83 kALn~Di~~rL~~~~~~-~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 83 KALNNDIRRRLEEPLRE-LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHH-cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999998874 678889999999999998899999999999999998777653 235889999999999999
Q ss_pred cC---CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCC----CCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 433 FN---DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP----DCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 433 ~~---~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~----~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
.. +....-.+.++....+ ..|.|++|||..+.. .+.+++. .+.++....... ....++....+...
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~--~varfL~g~~~~~~Iv~~~~~k~----~~i~v~~p~~~~~~ 234 (814)
T COG1201 162 AESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPE--EVAKFLVGFGDPCEIVDVSAAKK----LEIKVISPVEDLIY 234 (814)
T ss_pred hccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHH--HHHHHhcCCCCceEEEEcccCCc----ceEEEEecCCcccc
Confidence 84 2233444666666666 899999999985332 2333332 223333322211 12112211111100
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
. ..........+.++++++. .+|||+||+.+++.++..|++.+. ..+..+||+++.+.|..+.++|++|+.
T Consensus 235 ~---~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 235 D---EELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred c---cchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHHHHHHHHhcCCc
Confidence 0 1222345667777777765 899999999999999999998753 578899999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG 645 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~ 645 (675)
+ ++|||..++.|||+.+++.||++..|+++..++||+||+|+.-+...+.+++...
T Consensus 306 r----avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 K----AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred e----EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 8 9999999999999999999999999999999999999999955677778777665
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.5e-39 Score=378.32 Aligned_cols=322 Identities=17% Similarity=0.207 Sum_probs=247.6
Q ss_pred CHHHHHHHHH-CCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 276 SDYMIESLKR-QNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 276 ~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+..+.+.+.+ ++| .||++|.++|+.++++ +|++++|+||+|||++|+++++..+.. +.++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~qv 503 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GKQV 503 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CCeE
Confidence 3455666654 677 5999999999999875 799999999999999999999987753 4589
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHH---HHhhC-CCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~---~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
+|++||++||.|+++.++++... .++++..++|+....+.. ..+.. .++|+|+||..+ .....+.+++++
T Consensus 504 lvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~ll 577 (926)
T TIGR00580 504 AVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLL 577 (926)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEE
Confidence 99999999999999999987653 567888888877654433 33333 589999999533 345678899999
Q ss_pred EEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC
Q 005837 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 425 VIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
||||+|++. . ..+..++..+...|+++||||+.+...........+...+..+...+. .+..++.....
T Consensus 578 VIDEahrfg--v----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~--~V~t~v~~~~~--- 646 (926)
T TIGR00580 578 IIDEEQRFG--V----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL--PVRTFVMEYDP--- 646 (926)
T ss_pred Eeecccccc--h----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc--ceEEEEEecCH---
Confidence 999999864 2 233445566678999999999887766554444445544444433221 23333322110
Q ss_pred CCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
......+...+. .+++++|||+++++++.+++.|++..+ ++.+..+||+|++.+|.+++++|++|+
T Consensus 647 ---------~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p---~~~v~~lHG~m~~~eRe~im~~F~~Gk 712 (926)
T TIGR00580 647 ---------ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVP---EARIAIAHGQMTENELEEVMLEFYKGE 712 (926)
T ss_pred ---------HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 011122222222 357899999999999999999998642 378999999999999999999999999
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
.+ |||||+++++|||+|++++||+++.+. +..+|+||+||+|| .|..|.|++++...
T Consensus 713 ~~----ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR-~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQ----VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR-SKKKAYAYLLYPHQ 770 (926)
T ss_pred CC----EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCC-CCCCeEEEEEECCc
Confidence 98 999999999999999999999999875 78899999999999 79999999998754
No 51
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=317.01 Aligned_cols=335 Identities=25% Similarity=0.432 Sum_probs=277.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.-|.++-|.+++++++.+.||.+|+++|.++||...-|.|++++|..|.|||.+|.+..++.+.- ..+...
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep---------v~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP---------VDGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC---------CCCeEE
Confidence 46889999999999999999999999999999999999999999999999999999999988743 234567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||+|.||+||.|+.++..++.++.+.+++.+.+||...+.....+++.++|+|+||++++.+.+++.+.+.+++.+|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999999999999999888999999999999988888888899999999999999999999999999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccc-cCCCceEEEEecCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ 506 (675)
|+|.|+...+.+.+++.+++..+...|++.+|||++.++.....+++.++..++...... ....+.++++.....
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~---- 268 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN---- 268 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh----
Confidence 999998788999999999999999999999999999998887777776655544443222 222334444433222
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
+|...+.+++....-.+++||+.+... | .|.
T Consensus 269 --------eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l-----------------------------~f~----- 299 (387)
T KOG0329|consen 269 --------EKNRKLNDLLDVLEFNQVVIFVKSVQR-------L-----------------------------SFQ----- 299 (387)
T ss_pred --------hhhhhhhhhhhhhhhcceeEeeehhhh-------h-----------------------------hhh-----
Confidence 466667777776667789999976543 0 021
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCcc-HHHHHHHHHHhcCCCCCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VSLAQRIMERNRKGHPLH 665 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~~~~~l~~~~~~~~~~~ 665 (675)
. =+|||+.++||+|+..++.|||||+|.+...|+||.||||| .|..|.++.|++.++ ...+..+..+.. ..+.
T Consensus 300 --k-r~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgr-fGtkglaitfvs~e~da~iLn~vqdRf~--v~i~ 373 (387)
T KOG0329|consen 300 --K-RLVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVSDENDAKILNPVQDRFE--VNIK 373 (387)
T ss_pred --h-hhHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhc-cccccceeehhcchhhHHHhchhhHhhh--ccHh
Confidence 1 28999999999999999999999999999999999999999 899999999998655 344445544333 2235
Q ss_pred CCChh
Q 005837 666 DVPSA 670 (675)
Q Consensus 666 ~l~~~ 670 (675)
+||..
T Consensus 374 eLpde 378 (387)
T KOG0329|consen 374 ELPDE 378 (387)
T ss_pred hcCcc
Confidence 55543
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.5e-38 Score=377.31 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=244.1
Q ss_pred HHHHHH-HHCCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 005837 278 YMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (675)
Q Consensus 278 ~l~~~l-~~~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLV 350 (675)
...+.+ ..+.| .||+.|.++|+.++++ +|++++++||+|||++|+.+++..+. .+++++|
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvlv 654 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVAV 654 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEEE
Confidence 344444 55677 7999999999999987 89999999999999999988876653 2569999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHh---h-CCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 351 l~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l---~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++||++||.|+++.+++.... .++++..++|+.+...+...+ . ..++|+|+||+.+ .....+.+++++||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 999999999999999986542 457788888887766654433 2 4689999999744 23456788999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||+|++. ..+ ...++.++.+.|+++||||+.+.........+.++..+..+...+ ..+..+.......
T Consensus 729 DEahrfG--~~~----~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~---- 796 (1147)
T PRK10689 729 DEEHRFG--VRH----KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSL---- 796 (1147)
T ss_pred echhhcc--hhH----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcH----
Confidence 9999983 222 334566777899999999998887776666666665555443322 2233333221100
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
..+...+.++. .+++++|||++++.++.+++.|.+..+ ++.+..+||+|++.+|.+++..|++|+.+
T Consensus 797 -------~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p---~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~ 863 (1147)
T PRK10689 797 -------VVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVP---EARIAIGHGQMRERELERVMNDFHHQRFN 863 (1147)
T ss_pred -------HHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCC---CCcEEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 01222222222 357899999999999999999998642 26788999999999999999999999998
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCC-CCHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFP-RDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
|||||+++++|||+|++++||..+.. .+..+|+||+||+|| .|..|.|++++...
T Consensus 864 ----VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR-~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 864 ----VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR-SHHQAYAWLLTPHP 919 (1147)
T ss_pred ----EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCC-CCCceEEEEEeCCC
Confidence 99999999999999999999954432 256689999999999 79999999988653
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-37 Score=373.01 Aligned_cols=325 Identities=21% Similarity=0.302 Sum_probs=231.0
Q ss_pred EEccCCCCchHHHHHHHHHHHHHHHhhcc-CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh-----------cCCCCceE
Q 005837 310 LADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLS-----------KCGVPFRS 377 (675)
Q Consensus 310 i~apTGsGKTl~~llp~l~~l~~~~~~~~-~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~-----------~~~~~~~v 377 (675)
|++|||||||+||++|++..+........ ......+.++|||+|+++|+.|+.+.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999875421000 0011246799999999999999999887521 12246889
Q ss_pred EEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-ccccccceEEEEcCcccccCC---ccHHHHHHHHHhhCCCCc
Q 005837 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILDEVDILFND---EDFEVALQSLISSSPVTA 453 (675)
Q Consensus 378 ~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~IVIDEaH~l~~~---~~~~~~l~~il~~~~~~~ 453 (675)
...+|+++.......+++.++|||+||++|..++.++ ...++++++|||||+|.+.+. ..+...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777888999999999999887643 346899999999999999842 235566777777777789
Q ss_pred cEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEecCCCCCCC--------Cc----hhhhhhhHHHH
Q 005837 454 QYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESD--------KT----PETAFLNKKSA 519 (675)
Q Consensus 454 qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~----~~~~~~~k~~~ 519 (675)
|+|++|||+.+. +.+.+++. ....++.....+ ...+. +.+......... .. ...........
T Consensus 161 QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r-~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMR-HPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCc-ccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999999999763 23444543 223333322211 11222 122211100000 00 00000001112
Q ss_pred HHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccC----------------------------CCeeEEEecCCCCHH
Q 005837 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE----------------------------TRVRVLPFHAALDQE 571 (675)
Q Consensus 520 l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~----------------------------~~~~v~~lhg~m~~~ 571 (675)
+...+. ...++||||||+..|+.++..|++..... ..+.+..|||+|+++
T Consensus 237 il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 237 ILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 222222 34689999999999999999998753110 012367899999999
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 572 TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 572 eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
+|..+++.|++|+++ +||||+++++|||++++++||+++.|.++.+|+||+||+||..+..+.++++..
T Consensus 315 eR~~IE~~fK~G~Lr----vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 315 QRAITEQALKSGELR----CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHHhCCce----EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 999999999999998 999999999999999999999999999999999999999995456667774433
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-37 Score=357.58 Aligned_cols=319 Identities=18% Similarity=0.209 Sum_probs=233.8
Q ss_pred HHHHHH-HHCCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 005837 278 YMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (675)
Q Consensus 278 ~l~~~l-~~~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLV 350 (675)
.+.+.+ ..++| .||++|.++++.+.++ ++.+++|+||||||++|++|++..+.. +.+++|
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~------------g~q~li 315 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA------------GYQAAL 315 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc------------CCeEEE
Confidence 444555 44566 6999999999999876 489999999999999999999987743 568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 351 l~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++||++||.|+++.++++... .++++..++|+.+.... +..+.. .++|+|+||+.+. ....+.+++++||
T Consensus 316 laPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVI 389 (681)
T PRK10917 316 MAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVII 389 (681)
T ss_pred EeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEE
Confidence 999999999999999998764 56889999999875443 333443 5999999998773 2345788999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||+|++. ...+. .+.......++++||||+.+...........+...+...... ...+.........
T Consensus 390 DE~Hrfg--~~qr~----~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~--r~~i~~~~~~~~~----- 456 (681)
T PRK10917 390 DEQHRFG--VEQRL----ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG--RKPITTVVIPDSR----- 456 (681)
T ss_pred echhhhh--HHHHH----HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC--CCCcEEEEeCccc-----
Confidence 9999874 22222 233345568999999998776544322111122122111111 1122222221100
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchh--------hHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHH
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIV--------TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMK 578 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~--------~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~ 578 (675)
.......+...+ ..+.+++|||+.++ .++.+++.|.+... .+.+..+||+|++.+|.++++
T Consensus 457 ------~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~---~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 457 ------RDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP---ELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred ------HHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC---CCcEEEEeCCCCHHHHHHHHH
Confidence 001112222322 24578999999654 34566777766532 268999999999999999999
Q ss_pred HHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 579 EFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 579 ~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
+|++|+.+ |||||+++++|||+|++++||+++.|. +...|.||+||+|| .|..|.|++++.
T Consensus 526 ~F~~g~~~----ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR-~g~~g~~ill~~ 587 (681)
T PRK10917 526 AFKAGEID----ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR-GAAQSYCVLLYK 587 (681)
T ss_pred HHHcCCCC----EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccC-CCCceEEEEEEC
Confidence 99999988 999999999999999999999999987 68899999999999 789999999995
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.7e-37 Score=353.20 Aligned_cols=318 Identities=18% Similarity=0.196 Sum_probs=228.5
Q ss_pred HHHHH-CCCCCChHHHHHHhhhhhcCC-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEE-EEcCcHHH
Q 005837 281 ESLKR-QNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV-ILAPTAEL 357 (675)
Q Consensus 281 ~~l~~-~g~~~~~~iQ~~~i~~il~g~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vL-Vl~Ptr~L 357 (675)
+.+.+ .||. |+|||.++++.++.|+ ++++++|||||||.++.++.+... . ....++.| +++|+|+|
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~---------~~~~~~rLv~~vPtReL 74 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I---------GAKVPRRLVYVVNRRTV 74 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c---------cccccceEEEeCchHHH
Confidence 34444 5887 9999999999999998 577789999999997654444221 1 02234445 57799999
Q ss_pred HHHHHHHHHHhhcCC----------------------CCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc
Q 005837 358 ASQVLSNCRSLSKCG----------------------VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI 415 (675)
Q Consensus 358 a~Q~~~~l~~l~~~~----------------------~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~ 415 (675)
+.|+++.+.++++.. ..+++..++||.....++..+..+++|||+|++.+. ++.
T Consensus 75 a~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~ 150 (844)
T TIGR02621 75 VDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRL 150 (844)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCc
Confidence 999999999987632 148899999999999999999999999999976553 222
Q ss_pred c----------------ccccceEEEEcCcccccCCccHHHHHHHHHhhC--CC---CccEEEEecCCCHHHHHHHHHhC
Q 005837 416 L----------------QLINLRCAILDEVDILFNDEDFEVALQSLISSS--PV---TAQYLFVTATLPVEIYNKLVEVF 474 (675)
Q Consensus 416 ~----------------~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~--~~---~~qiI~lSAT~~~~v~~~l~~~~ 474 (675)
+ .+.++++||||||| + +.+|...+..|++.. ++ +.|+++||||++.++......+.
T Consensus 151 L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD-L--d~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~ 227 (844)
T TIGR02621 151 LFSGYGCGFKSRPLHAGFLGQDALIVHDEAH-L--EPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS 227 (844)
T ss_pred cccccccccccccchhhhhccceEEEEehhh-h--ccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc
Confidence 2 26789999999999 3 578999999999864 33 26999999999987765544444
Q ss_pred CCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcc
Q 005837 475 PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554 (675)
Q Consensus 475 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~ 554 (675)
.+...+...........+.++ +..... .....+...+..++. ..++++||||||++.|+.+++.|++.+
T Consensus 228 ~~p~~i~V~~~~l~a~ki~q~-v~v~~e--------~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g- 296 (844)
T TIGR02621 228 AEDYKHPVLKKRLAAKKIVKL-VPPSDE--------KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEK- 296 (844)
T ss_pred cCCceeecccccccccceEEE-EecChH--------HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcC-
Confidence 333222221111111222332 111110 001112222222232 345789999999999999999998753
Q ss_pred cCCCeeEEEecCCCCHHHHH-----HHHHHHhc----CC---CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHH
Q 005837 555 KETRVRVLPFHAALDQETRL-----ANMKEFTT----SR---SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622 (675)
Q Consensus 555 ~~~~~~v~~lhg~m~~~eR~-----~v~~~F~~----g~---~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y 622 (675)
+ ..+||+|++.+|. .+++.|++ +. .++...|||||+++++|||++. ++||++..| .+.|
T Consensus 297 ----~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esy 367 (844)
T TIGR02621 297 ----F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESM 367 (844)
T ss_pred ----C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHH
Confidence 3 7899999999999 88999987 32 1112459999999999999986 889988777 8999
Q ss_pred HHHhcccccCCCCcc
Q 005837 623 VRRVGRTARGAGGTG 637 (675)
Q Consensus 623 ~Qr~GRagR~~g~~g 637 (675)
+||+||+|| .|..+
T Consensus 368 IQRiGRtgR-~G~~~ 381 (844)
T TIGR02621 368 QQRFGRVNR-FGELQ 381 (844)
T ss_pred HHHhcccCC-CCCCC
Confidence 999999999 56543
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.5e-37 Score=351.25 Aligned_cols=318 Identities=20% Similarity=0.254 Sum_probs=230.9
Q ss_pred HHHHHHCCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 280 IESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 280 ~~~l~~~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
.+.+..++| +||+.|.++++.++++ .+.+++|+||||||++|++|++..+.. +.+++|++|
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~------------g~qvlilaP 292 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA------------GYQVALMAP 292 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc------------CCcEEEECC
Confidence 344566788 7999999999999875 368999999999999999999987743 568999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCc
Q 005837 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (675)
Q Consensus 354 tr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEa 429 (675)
|++|+.|+++.++++... .++++..++|+...... +..+. ..++|+|+||+.+. ....+.+++++||||+
T Consensus 293 T~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEech
Confidence 999999999999998763 46889999999876553 33333 35899999998764 2356788999999999
Q ss_pred ccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCch
Q 005837 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509 (675)
Q Consensus 430 H~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 509 (675)
|++. ...+..+....... ...++++||||+.+...... .+.+...............+....... .
T Consensus 367 H~fg--~~qr~~l~~~~~~~-~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~--~------- 432 (630)
T TIGR00643 367 HRFG--VEQRKKLREKGQGG-FTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH--D------- 432 (630)
T ss_pred hhcc--HHHHHHHHHhcccC-CCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc--c-------
Confidence 9874 22222222221111 26789999999866544322 222211111110000011122222111 0
Q ss_pred hhhhhhHHHHHHHHHHh--CCCCceEEEecchh--------hHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHH
Q 005837 510 ETAFLNKKSALLQLIEK--SPVSKTIVFCNKIV--------TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579 (675)
Q Consensus 510 ~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~--------~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~ 579 (675)
....+...+.. ..+.+++|||+..+ .++.+++.|.+.. .++.+..+||+|++++|.++++.
T Consensus 433 ------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~ 503 (630)
T TIGR00643 433 ------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEE 503 (630)
T ss_pred ------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHH
Confidence 11222222222 23568999999764 4556677776643 23789999999999999999999
Q ss_pred HhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 580 F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
|++|+.+ |||||+++++|||+|++++||+++.|. +...|.||+||+|| .|..|.|++++.
T Consensus 504 F~~g~~~----ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR-~g~~g~~il~~~ 564 (630)
T TIGR00643 504 FREGEVD----ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGR-GDHQSYCLLVYK 564 (630)
T ss_pred HHcCCCC----EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhccc-CCCCcEEEEEEC
Confidence 9999988 999999999999999999999999986 78899999999999 789999999993
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.8e-36 Score=349.36 Aligned_cols=314 Identities=19% Similarity=0.206 Sum_probs=234.2
Q ss_pred HHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 005837 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373 (675)
Q Consensus 294 iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~ 373 (675)
+-.+.+..+.+++++|++|+||||||++|.+++++... .+++++|++|+|++|.|+++++.+......
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 34566677778899999999999999999999987642 245899999999999999999875543334
Q ss_pred CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc-ccCCccHHH-HHHHHHhhCCC
Q 005837 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEV-ALQSLISSSPV 451 (675)
Q Consensus 374 ~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~-l~~~~~~~~-~l~~il~~~~~ 451 (675)
+..+.+..++... .....+|+|+||++|++.+.. ...+.++++|||||+|. .+ +.++.. .++.+...++.
T Consensus 74 g~~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L-~~Dl~L~ll~~i~~~lr~ 145 (819)
T TIGR01970 74 GQTVGYRVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSL-DADLGLALALDVQSSLRE 145 (819)
T ss_pred CcEEEEEEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhh-ccchHHHHHHHHHHhcCC
Confidence 4455555554321 233578999999999988876 45789999999999995 45 445433 34556666778
Q ss_pred CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCc
Q 005837 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531 (675)
Q Consensus 452 ~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k 531 (675)
..|+|+||||++...+ .+++.++..+...+. ...+++++....... .........+..++.. ..+.
T Consensus 146 dlqlIlmSATl~~~~l---~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~-------~~~~~v~~~l~~~l~~-~~g~ 211 (819)
T TIGR01970 146 DLKILAMSATLDGERL---SSLLPDAPVVESEGR---SFPVEIRYLPLRGDQ-------RLEDAVSRAVEHALAS-ETGS 211 (819)
T ss_pred CceEEEEeCCCCHHHH---HHHcCCCcEEEecCc---ceeeeeEEeecchhh-------hHHHHHHHHHHHHHHh-cCCc
Confidence 8999999999997753 456655545443321 122344443322110 0000112334444443 3578
Q ss_pred eEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEE
Q 005837 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611 (675)
Q Consensus 532 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI 611 (675)
+||||+++.+++.+++.|++... .++.+..+||+|++++|.++++.|++|..+ |||||+++++|||+|+|++||
T Consensus 212 iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk----VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 212 ILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRK----VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred EEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeE----EEEecchHhhcccccCceEEE
Confidence 99999999999999999987421 248899999999999999999999999888 999999999999999999999
Q ss_pred EcCCCC------------------CHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 612 LFDFPR------------------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 612 ~~d~p~------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
++++++ |..+|.||+||||| . .+|.||.+|+..+..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR-~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGR-L-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCC-C-CCCEEEEeCCHHHHH
Confidence 999875 34579999999999 3 899999999876543
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.7e-36 Score=337.35 Aligned_cols=328 Identities=17% Similarity=0.181 Sum_probs=228.5
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHH---------HHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLA---------YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~---------~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+..-. ....+++++|++||++||.|+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~------~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID------PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc------cccCCcEEEEECcHHHHHHHHHH
Confidence 57999999999999999999999999997 3344444432100 11235689999999999999999
Q ss_pred HHHHhhcC--CCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHH
Q 005837 364 NCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441 (675)
Q Consensus 364 ~l~~l~~~--~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~ 441 (675)
.+.+...+ ..+..+.+.+|+.... .........+|+|+|++.. ...+..+++|||||||.+.... ..
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---Dl 309 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DI 309 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch---hH
Confidence 98775543 1245678889997732 2222233679999997521 2257889999999999987322 33
Q ss_pred HHHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHH
Q 005837 442 LQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSAL 520 (675)
Q Consensus 442 l~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l 520 (675)
+..+++.. +...|+++||||++.++.. +..++.++..+..++ .....++++++........ ........+. .+
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~--~~~y~~~~k~-~~ 383 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKN--KRAYIEEEKK-NI 383 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhcCCcEEEeCC--CcCCCeEEEEeecCccccc--chhhhHHHHH-HH
Confidence 33344333 2335999999999887654 467777665555442 2224455555432211000 0000011122 22
Q ss_pred HHHHHh---CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH-hcCCCCCCceEEEEcc
Q 005837 521 LQLIEK---SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF-TTSRSKEARLFLVCTD 596 (675)
Q Consensus 521 ~~ll~~---~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F-~~g~~~~~~~VLVaT~ 596 (675)
...+.. ..++++||||+++.+|+.+++.|++.. .++.+..+||+|++. .++++.| ++|+.+ |||||+
T Consensus 384 l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k----ILVATd 454 (675)
T PHA02653 384 VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNI--DEILEKVYSSKNPS----IIISTP 454 (675)
T ss_pred HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHH--HHHHHHHhccCcee----EEeccC
Confidence 233322 234689999999999999999998753 137899999999975 4666777 677776 999999
Q ss_pred cccccCCCCCcCEEEEcC---CCC---------CHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHH
Q 005837 597 RASRGIDFAGVDHVVLFD---FPR---------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654 (675)
Q Consensus 597 ~~~~GiDip~v~~VI~~d---~p~---------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l 654 (675)
++++|||+|+|++||+++ .|. |.++|.||+||||| . .+|.|+.|++..+...++++
T Consensus 455 IAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR-~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 455 YLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGR-V-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred hhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCC-C-CCCeEEEEECHHHhHHHHHH
Confidence 999999999999999998 565 88899999999999 4 89999999998775443333
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-35 Score=307.97 Aligned_cols=336 Identities=23% Similarity=0.270 Sum_probs=244.1
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.+++.||.......+.+ |+++++|||-|||+++.+-+...+.+.+ + ++|+++||+-|+.|++..|++.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~----------~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG----------G-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC----------C-eEEEecCCchHHHHHHHHHHHH
Confidence 46789999988887766 9999999999999999998888887742 3 8999999999999999999998
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
... .+-.+..++|....... .......+|+|+||+.+.+-+..+.+++.++.++|+||||+-.+++.+....+.+++.
T Consensus 82 ~~i-p~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 82 TGI-PEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred hCC-ChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 764 34567788887766543 4445668999999999999999999999999999999999999777777777777765
Q ss_pred CCCCccEEEEecCCCHH---HHHHHHHhCCCCeEEeCCCccccCC---CceEEEEec-----------------------
Q 005837 449 SPVTAQYLFVTATLPVE---IYNKLVEVFPDCKVVMGPGMHRISP---GLEEFLVDC----------------------- 499 (675)
Q Consensus 449 ~~~~~qiI~lSAT~~~~---v~~~l~~~~~~~~~i~~~~~~~~~~---~i~~~~~~~----------------------- 499 (675)
. .++.+++||||+-.+ +.+.+.++.-....+.........+ .++...+.+
T Consensus 160 ~-k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 160 A-KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred c-cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 5 478899999998432 2222222111111111111100000 000000000
Q ss_pred ---------CCC-----------------C--CCCCch------------------------------------------
Q 005837 500 ---------SGD-----------------Q--ESDKTP------------------------------------------ 509 (675)
Q Consensus 500 ---------~~~-----------------~--~~~~~~------------------------------------------ 509 (675)
... . ......
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 000 0 000000
Q ss_pred -------------h-----------hhhhhHHHHHHHHH----HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeE
Q 005837 510 -------------E-----------TAFLNKKSALLQLI----EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561 (675)
Q Consensus 510 -------------~-----------~~~~~k~~~l~~ll----~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v 561 (675)
. .....|+..+..++ ++..+.++|||++.+++++.+.+.|.+.+.... ..+
T Consensus 319 k~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rF 397 (542)
T COG1111 319 KAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRF 397 (542)
T ss_pred HHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEE
Confidence 0 00001223333333 334567999999999999999999998775432 111
Q ss_pred -E----EecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCc
Q 005837 562 -L----PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636 (675)
Q Consensus 562 -~----~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~ 636 (675)
+ -...+|+|.++.++++.|++|.++ |||||++++.|+|+|+++.||+|+...|.-.++||.||+|| +..
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n----VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR--~r~ 471 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKGEYN----VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR--KRK 471 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcCCce----EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc--CCC
Confidence 1 123589999999999999999999 99999999999999999999999999999999999999999 599
Q ss_pred cEEEEEEeCc
Q 005837 637 GKAFIFVVGK 646 (675)
Q Consensus 637 g~~i~~~~~~ 646 (675)
|.+++++...
T Consensus 472 Grv~vLvt~g 481 (542)
T COG1111 472 GRVVVLVTEG 481 (542)
T ss_pred CeEEEEEecC
Confidence 9999999977
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.7e-36 Score=346.07 Aligned_cols=314 Identities=18% Similarity=0.180 Sum_probs=233.3
Q ss_pred HHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 005837 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373 (675)
Q Consensus 294 iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~ 373 (675)
+-.+.+.++.++++++++|+||||||++|.+++++.. ...++++|++|+|++|.|+++++.+......
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~ 76 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------GINGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------CcCCeEEEECChHHHHHHHHHHHHHHhCccc
Confidence 3456667777889999999999999999999888542 1134899999999999999999876544345
Q ss_pred CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccH-HHHHHHHHhhCCCC
Q 005837 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF-EVALQSLISSSPVT 452 (675)
Q Consensus 374 ~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~-~~~l~~il~~~~~~ 452 (675)
+..+....++..... ...+|+|+||++|.+++.. ...+.++++|||||+|...-+.++ ...+..+++.++.+
T Consensus 77 g~~VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~ 149 (812)
T PRK11664 77 GETVGYRMRAESKVG------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDD 149 (812)
T ss_pred CceEEEEecCccccC------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCcc
Confidence 566777776654322 2467999999999988876 457899999999999974213333 23445566667788
Q ss_pred ccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCce
Q 005837 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532 (675)
Q Consensus 453 ~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~ 532 (675)
.|+|+||||++.+. +..++++...+...+. ...+++.+....... .........+..++.. ..+.+
T Consensus 150 lqlilmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~-------~~~~~v~~~l~~~l~~-~~g~i 215 (812)
T PRK11664 150 LKLLIMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQ-------RFDEAVARATAELLRQ-ESGSL 215 (812)
T ss_pred ceEEEEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhh-------hHHHHHHHHHHHHHHh-CCCCE
Confidence 99999999998764 3456665555443322 122444443322110 0000111234444443 35789
Q ss_pred EEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE
Q 005837 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 533 IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~ 612 (675)
||||+++.+++.+++.|++... .++.+..+||+|++++|.++++.|++|+.+ |||||+++++|||+|+|++||+
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk----VlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRK----VVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeE----EEEecchHHhcccccCceEEEE
Confidence 9999999999999999987321 237899999999999999999999999888 9999999999999999999999
Q ss_pred cCCCC------------------CHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 613 FDFPR------------------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 613 ~d~p~------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
+++++ |..+|.||+||||| . .+|.||.+|+..+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR-~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGR-L-EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCC-C-CCcEEEEecCHHHH
Confidence 88775 34689999999999 3 79999999987654
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-35 Score=360.91 Aligned_cols=335 Identities=15% Similarity=0.176 Sum_probs=251.1
Q ss_pred HHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH
Q 005837 278 YMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (675)
Q Consensus 278 ~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~ 356 (675)
++.+.+++ +|| .|+++|.++++.+++|+|++++||||+|||++++++++.... .+.++|||+||++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------------~g~~aLVl~PTre 133 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------------KGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------------cCCeEEEEECHHH
Confidence 44566665 799 699999999999999999999999999999977776654321 2568999999999
Q ss_pred HHHHHHHHHHHhhcC-CCCceEEEEECCcchHHHH---HHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc
Q 005837 357 LASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQL---ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (675)
Q Consensus 357 La~Q~~~~l~~l~~~-~~~~~v~~l~gg~~~~~~~---~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~ 431 (675)
|+.|+.+.++.++.. +.++.+..++|+.+...+. ..+.. .++|+|+||+.|...+... . ...+++|||||||+
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECcee
Confidence 999999999998753 2356778888888766553 33444 5999999999988766542 2 26799999999999
Q ss_pred ccC----------CccHHHHHHH----HHh----------------------hCCCCcc-EEEEecCCCHHHHHHHHHhC
Q 005837 432 LFN----------DEDFEVALQS----LIS----------------------SSPVTAQ-YLFVTATLPVEIYNKLVEVF 474 (675)
Q Consensus 432 l~~----------~~~~~~~l~~----il~----------------------~~~~~~q-iI~lSAT~~~~v~~~l~~~~ 474 (675)
|+. ..+|.+++.. ++. ..+...| ++++|||.+... .....+
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~ 289 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLY 289 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHh
Confidence 974 1478877754 322 2233445 577999998531 112233
Q ss_pred CCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhh---HHHHHHHHHH
Q 005837 475 PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVT---CRKVENILKR 551 (675)
Q Consensus 475 ~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~---~~~l~~~L~~ 551 (675)
.+...+..........++.+.++.... .....+..+++.. +.++||||++++. |+.+++.|.+
T Consensus 290 ~~~l~f~v~~~~~~lr~i~~~yi~~~~-------------~~k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~ 355 (1638)
T PRK14701 290 RELLGFEVGSGRSALRNIVDVYLNPEK-------------IIKEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLE 355 (1638)
T ss_pred hcCeEEEecCCCCCCCCcEEEEEECCH-------------HHHHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHH
Confidence 333333333222233445555443221 1124566777665 4689999999876 5899999988
Q ss_pred hcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEc----ccccccCCCCC-cCEEEEcCCCC---CHHHHH
Q 005837 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT----DRASRGIDFAG-VDHVVLFDFPR---DPSEYV 623 (675)
Q Consensus 552 ~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT----~~~~~GiDip~-v~~VI~~d~p~---s~~~y~ 623 (675)
.+ +.+..+||+ |..+++.|++|+.+ ||||| ++++||||+|+ |++|||||+|+ +++.|.
T Consensus 356 ~G-----i~a~~~h~~-----R~~~l~~F~~G~~~----VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~ 421 (1638)
T PRK14701 356 DG-----FKIELVSAK-----NKKGFDLFEEGEID----YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLED 421 (1638)
T ss_pred CC-----CeEEEecch-----HHHHHHHHHcCCCC----EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcc
Confidence 65 899999995 88999999999998 99999 48899999999 99999999999 888887
Q ss_pred HHh-------------cccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 624 RRV-------------GRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 624 Qr~-------------GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
|.. ||||| .|.++.++..+...+...++.++...
T Consensus 422 ~~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~~~~~~~~~~l~~~ 468 (1638)
T PRK14701 422 PTIYRILGLLSEILKIEEELK-EGIPIEGVLDVFPEDVEFLRSILKDE 468 (1638)
T ss_pred cchhhhhcchHHHHHhhhhcc-cCCcchhHHHhHHHHHHHHHHHhccH
Confidence 776 99999 78899998777788888888776653
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.5e-35 Score=348.29 Aligned_cols=289 Identities=16% Similarity=0.186 Sum_probs=214.5
Q ss_pred HHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 281 ~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
+.+.+ .|+ .|+++|.++++.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHH
Confidence 34434 466 8999999999999999999999999999997 44555444422 2669999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEECCcch-----HHHHHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQ-----KTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 360 Q~~~~l~~l~~~~~~~~v~~l~gg~~~-----~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
|+++.+++++.. .++.+..++|+... ......+. ..++|+|+||++|.+.+. .+....+++|||||||+++
T Consensus 138 Qi~~~l~~l~~~-~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 138 QVVEKLEKFGEK-VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHhhh-cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999874 45667777766532 22333444 459999999999998776 3556679999999999998
Q ss_pred C----------CccHH-HHHHHHHhhCCC------------------------CccEEEEecCCCHH-HHHHHHHhCCCC
Q 005837 434 N----------DEDFE-VALQSLISSSPV------------------------TAQYLFVTATLPVE-IYNKLVEVFPDC 477 (675)
Q Consensus 434 ~----------~~~~~-~~l~~il~~~~~------------------------~~qiI~lSAT~~~~-v~~~l~~~~~~~ 477 (675)
. ..+|. ..+..++..++. ..|++++|||+++. +...+ +.+.
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l---~~~l 291 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL---FREL 291 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH---hhcc
Confidence 3 15674 566666665543 67999999999864 33222 1111
Q ss_pred eEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhh---HHHHHHHHHHhcc
Q 005837 478 KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVT---CRKVENILKRFDR 554 (675)
Q Consensus 478 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~---~~~l~~~L~~~~~ 554 (675)
..+..........++.+.++... .+...+..+++... .++||||++++. ++.+++.|+..+
T Consensus 292 l~~~v~~~~~~~rnI~~~yi~~~--------------~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~g- 355 (1176)
T PRK09401 292 LGFEVGSPVFYLRNIVDSYIVDE--------------DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLG- 355 (1176)
T ss_pred ceEEecCcccccCCceEEEEEcc--------------cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCC-
Confidence 11222222223345555554332 25556777776654 589999999888 999999999876
Q ss_pred cCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE----cccccccCCCCC-cCEEEEcCCCC
Q 005837 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC----TDRASRGIDFAG-VDHVVLFDFPR 617 (675)
Q Consensus 555 ~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p~ 617 (675)
+.+..+||+| .+.++.|++|+.+ |||| |++++||||+|+ |++||||++|+
T Consensus 356 ----i~v~~~hg~l-----~~~l~~F~~G~~~----VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 356 ----INAELAISGF-----ERKFEKFEEGEVD----VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred ----CcEEEEeCcH-----HHHHHHHHCCCCC----EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 8899999999 2345999999998 9999 689999999999 89999999996
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=329.20 Aligned_cols=348 Identities=20% Similarity=0.267 Sum_probs=244.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
+.+.+.+.+...++..+.+-|+.++.. +.+++|++|++|||||||+++++.+++.+.+. +.++|||||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----------~~k~vYivP 84 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----------GGKVVYIVP 84 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------CCcEEEEeC
Confidence 456666777777887777777777766 45669999999999999999999999988763 458999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 354 tr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
+++||.+.++.++.+.. .++++...+|+....... ..+++|+|+|||++..++++....+..+++|||||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhHHh--cCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999996554 468999999998866532 3368999999999999999877788899999999999998
Q ss_pred CCccHHHHHHHHHhh---CCCCccEEEEecCCCHHHHHHHHHhCCCCeEE--eCC-CccccCCCceEEEEecCCCCCCCC
Q 005837 434 NDEDFEVALQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV--MGP-GMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 434 ~~~~~~~~l~~il~~---~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i--~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
+....+.+..+... .....|++++|||++.-. .+..++...... ..+ ...+-.+.... +........ .
T Consensus 160 -d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~--evA~wL~a~~~~~~~rp~~l~~~v~~~~~-~~~~~~~~k--~ 233 (766)
T COG1204 160 -DRTRGPVLESIVARMRRLNELIRIVGLSATLPNAE--EVADWLNAKLVESDWRPVPLRRGVPYVGA-FLGADGKKK--T 233 (766)
T ss_pred -CcccCceehhHHHHHHhhCcceEEEEEeeecCCHH--HHHHHhCCcccccCCCCcccccCCccceE-EEEecCccc--c
Confidence 33334444444322 223489999999998542 344444322110 100 11111111111 221111111 0
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc-----------------C--------------
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK-----------------E-------------- 556 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~-----------------~-------------- 556 (675)
............+...+ ..++++||||+|++.+...++.|...... .
T Consensus 234 ~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 234 WPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 01111111222222222 24679999999999999999988731100 0
Q ss_pred -CCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC-----CCCCHHHHHHHh
Q 005837 557 -TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD-----FPRDPSEYVRRV 626 (675)
Q Consensus 557 -~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d-----~p~s~~~y~Qr~ 626 (675)
....++++|++|+.++|..+.+.|+.|.++ |||||.++++|+|+|.-++||- |+ .+-++.+++||+
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik----Vlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~ 387 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIK----VLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMA 387 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCce----EEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhcc
Confidence 003588999999999999999999999999 9999999999999997666654 55 344789999999
Q ss_pred ccccc-CCCCccEEEEEE-eCccHHH
Q 005837 627 GRTAR-GAGGTGKAFIFV-VGKQVSL 650 (675)
Q Consensus 627 GRagR-~~g~~g~~i~~~-~~~d~~~ 650 (675)
||||| +....|.++++. +..+..+
T Consensus 388 GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 388 GRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred CcCCCCCcCCCCcEEEEecCccchhH
Confidence 99999 456778888777 3344333
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=305.11 Aligned_cols=339 Identities=22% Similarity=0.339 Sum_probs=257.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
-..+++.+++++.+-|+..|+..+.|+|.-++.+ ++.|+|.+++.+|+||||++..++-+..+.. .+.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----------~g~ 262 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----------GGK 262 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----------CCC
Confidence 3567888999999999999999999999999987 8899999999999999999999888877764 356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHH----HHhhCCCcEEEeCHHHHHHHHHhcccccccce
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL----ENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~----~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~ 422 (675)
+.|+++|..+||+|.++.+++-.. ..++.+.+-.|....+... ......+||||+|++.+..+++.+ ..+.++.
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiG 340 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIG 340 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccc
Confidence 899999999999999999987543 2567777777765544332 122345899999999999999886 6799999
Q ss_pred EEEEcCcccccC-CccHH-HHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecC
Q 005837 423 CAILDEVDILFN-DEDFE-VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (675)
Q Consensus 423 ~IVIDEaH~l~~-~~~~~-~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 500 (675)
.+||||+|++.+ +.+.+ .-+..-++.+.+..|+|.+|||.-..- .+.+.+....+... ++ +..++...+-+.
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~--elA~~l~a~lV~y~---~R-PVplErHlvf~~ 414 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE--ELAKKLGAKLVLYD---ER-PVPLERHLVFAR 414 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH--HHHHHhCCeeEeec---CC-CCChhHeeeeec
Confidence 999999999984 12221 223333455566899999999984331 23333332222221 11 122333333222
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHh--------CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHH
Q 005837 501 GDQESDKTPETAFLNKKSALLQLIEK--------SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572 (675)
Q Consensus 501 ~~~~~~~~~~~~~~~k~~~l~~ll~~--------~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~e 572 (675)
+.. +|...+.++.+. .-.+++|||++|+..|..+++.|...+ +.+.+||++|+..+
T Consensus 415 ~e~-----------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG-----~~a~pYHaGL~y~e 478 (830)
T COG1202 415 NES-----------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG-----LKAAPYHAGLPYKE 478 (830)
T ss_pred Cch-----------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC-----cccccccCCCcHHH
Confidence 221 466666666542 125789999999999999999998765 88999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cCCCC-CHHHHHHHhccccc-CCCCccEEEEEEeCc
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FDFPR-DPSEYVRRVGRTAR-GAGGTGKAFIFVVGK 646 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d~p~-s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~ 646 (675)
|..+...|.++++. ++|+|.+++-|+|+|.-. ||+ .+.-| |+.+|.||.||||| .....|++|+++.+.
T Consensus 479 Rk~vE~~F~~q~l~----~VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 479 RKSVERAFAAQELA----AVVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHhcCCcc----eEeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999999999 999999999999999655 444 33333 89999999999999 345799999998754
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.9e-34 Score=306.45 Aligned_cols=304 Identities=16% Similarity=0.171 Sum_probs=201.7
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcch
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~ 386 (675)
++++.+|||||||++|+++++..+.. ..+.+++|++|+++|+.|+++++.++... .+..+.++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHH
Confidence 58999999999999999999987643 23569999999999999999999997432 23333333221
Q ss_pred H------------HHHHHh------hCCCcEEEeCHHHHHHHHHhcc----ccc--ccceEEEEcCcccccCCccHHHHH
Q 005837 387 K------------TQLENL------QEGVDVLIATPGRFMFLIKEGI----LQL--INLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 387 ~------------~~~~~l------~~~~~IlV~Tp~~L~~~l~~~~----~~l--~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
. ...... ....+|+|+||+++...+.... ..+ -..++|||||+|.+. +..+.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~-~~~~~~-l 144 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYD-EYTLAL-I 144 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCC-HHHHHH-H
Confidence 0 000011 1236799999999987665411 111 123789999999998 333333 4
Q ss_pred HHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHH
Q 005837 443 QSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521 (675)
Q Consensus 443 ~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 521 (675)
..++..+ ....|+++||||+|..+.+.+.......... ............+.+...... ...+...+.
T Consensus 145 ~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~ 213 (358)
T TIGR01587 145 LAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNE-PLDLKEERRFERHRFIKIESD----------KVGEISSLE 213 (358)
T ss_pred HHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCccccc-CCCCccccccccccceeeccc----------cccCHHHHH
Confidence 4444333 3468999999999966554443332111000 000000000001111111100 002333444
Q ss_pred HHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHH----HHHHhcCCCCCCceEEEEcc
Q 005837 522 QLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN----MKEFTTSRSKEARLFLVCTD 596 (675)
Q Consensus 522 ~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v----~~~F~~g~~~~~~~VLVaT~ 596 (675)
.++.. ..++++||||+++++|+.+++.|++.+.. ..+..+||+|++.+|.++ ++.|+++... |||||+
T Consensus 214 ~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~---~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~----ilvaT~ 286 (358)
T TIGR01587 214 RLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE---EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF----VIVATQ 286 (358)
T ss_pred HHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC---CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe----EEEECc
Confidence 44443 24679999999999999999999886522 368999999999999764 8899998877 999999
Q ss_pred cccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCC---ccEEEEEEeCcc
Q 005837 597 RASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGG---TGKAFIFVVGKQ 647 (675)
Q Consensus 597 ~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~---~g~~i~~~~~~d 647 (675)
++++|+|++ +++||++..| +++|+||+||+||.+.. .|.+++|....+
T Consensus 287 ~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 287 VIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred chhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999995 8899998877 89999999999993222 347888877544
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.2e-34 Score=318.80 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=218.8
Q ss_pred CCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 288 ~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
...|+++|.++++.++.++++++++|||+|||+++...+ ..+.. ...+++|||+||++|+.|+.+.+++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999765432 22222 1234899999999999999999999
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
+... ....+..+.+|.... ...+|+|+||+.+.+.... .+.++++||+||||++. .. .+..++.
T Consensus 181 ~~~~-~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~-~~----~~~~il~ 244 (501)
T PHA02558 181 YRLF-PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFT-GK----SLTSIIT 244 (501)
T ss_pred hccc-cccceeEEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhccc-ch----hHHHHHH
Confidence 7653 223444555654432 2468999999998754422 36789999999999997 33 3455666
Q ss_pred hCCCCccEEEEecCCCHHHHHH--HHHhCCCCeEEeCCC-c----cccCCCceEEEEecCCCCCC-----CCch----hh
Q 005837 448 SSPVTAQYLFVTATLPVEIYNK--LVEVFPDCKVVMGPG-M----HRISPGLEEFLVDCSGDQES-----DKTP----ET 511 (675)
Q Consensus 448 ~~~~~~qiI~lSAT~~~~v~~~--l~~~~~~~~~i~~~~-~----~~~~~~i~~~~~~~~~~~~~-----~~~~----~~ 511 (675)
.+++..++++||||+....... +...+++........ . ......+............. .... ..
T Consensus 245 ~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501)
T PHA02558 245 KLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT 324 (501)
T ss_pred hhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh
Confidence 6666778999999996532211 222333322111100 0 00001111111111100000 0000 00
Q ss_pred hhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 005837 512 AFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589 (675)
Q Consensus 512 ~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~ 589 (675)
....+...+..++.. ..+.+++|||.+.++++.+++.|++.+ ..+..+||+|++++|..+++.|++|...
T Consensus 325 ~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g-----~~v~~i~G~~~~~eR~~i~~~~~~~~~~--- 396 (501)
T PHA02558 325 SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY-----DKVYYVSGEVDTEDRNEMKKIAEGGKGI--- 396 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC-----CCEEEEeCCCCHHHHHHHHHHHhCCCCe---
Confidence 111122333333322 235689999999999999999999865 6899999999999999999999988776
Q ss_pred eEEEEc-ccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEE
Q 005837 590 LFLVCT-DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 590 ~VLVaT-~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
||||| +++++|+|+|++++||++++++|...|+||+||++|..+.+..|++|
T Consensus 397 -vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 397 -IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred -EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99998 89999999999999999999999999999999999943445556655
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=7.1e-34 Score=289.73 Aligned_cols=310 Identities=24% Similarity=0.403 Sum_probs=227.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcC--CCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceE
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~--~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~ 423 (675)
|.++|+-|+++|++|..+++.++..+ ++.++..++.||...+.+...+..+.+|+|+||+++.+.+....+.+..+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 77999999999999999988887553 3456778899999999999999999999999999999999998999999999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCC------CCccEEEEecCCCHHHHHHH-HHhCCCCeEEeCCCccccCCCceEEE
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSP------VTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISPGLEEFL 496 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~------~~~qiI~lSAT~~~~v~~~l-~~~~~~~~~i~~~~~~~~~~~i~~~~ 496 (675)
+|+||++.++ ..++...+.++..+++ ...|.++.|||+..--...+ .+.+.-+..+........+..+.+++
T Consensus 367 lvlDead~lL-~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLL-GQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEecchhhhh-hcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999998 6677777777766654 35789999999842111111 11111122222233333333333322
Q ss_pred EecCCC---------------------------CCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHH
Q 005837 497 VDCSGD---------------------------QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENIL 549 (675)
Q Consensus 497 ~~~~~~---------------------------~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L 549 (675)
..+... ............-+-+.-+..++++.-.+.||||.++.+|+.+..++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 211100 00000001111112233344556677789999999999999999999
Q ss_pred HHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccc
Q 005837 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629 (675)
Q Consensus 550 ~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 629 (675)
.+.+. ..+.+.++||+..+.+|.+.++.|+.++.+ +||||+++++||||.++-++|+..+|..-.+|+||+||+
T Consensus 526 ~qkgg--~~~scvclhgDrkP~Erk~nle~Fkk~dvk----flictdvaargldi~g~p~~invtlpd~k~nyvhrigrv 599 (725)
T KOG0349|consen 526 NQKGG--KHYSCVCLHGDRKPDERKANLESFKKFDVK----FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRV 599 (725)
T ss_pred HHcCC--ccceeEEEecCCChhHHHHHHHhhhhcCeE----EEEEehhhhccccccCCceEEEEecCcccchhhhhhhcc
Confidence 98764 348899999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 630 gR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
|| +.+-|-++.++.......-....+...++..
T Consensus 600 gr-aermglaislvat~~ekvwyh~c~srgr~c~ 632 (725)
T KOG0349|consen 600 GR-AERMGLAISLVATVPEKVWYHWCKSRGRSCN 632 (725)
T ss_pred ch-hhhcceeEEEeeccchheeehhhhccCCccc
Confidence 99 7889999888764332222224444444433
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=308.38 Aligned_cols=354 Identities=16% Similarity=0.270 Sum_probs=255.1
Q ss_pred CCCCCChHHHHHHhhhhhc-CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~-g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
++|..++.+|..++|.++. +.|+|||||||+|||-+|+|.+++.+.+.... ........+++||+|+++||.++++.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~--~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ--GDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc--cccccCCceEEEEechHHHHHHHHHH
Confidence 5677889999999999885 68999999999999999999999999873211 12234567999999999999999988
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc---cccccceEEEEcCcccccCCcc--HH
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI---LQLINLRCAILDEVDILFNDED--FE 439 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~---~~l~~i~~IVIDEaH~l~~~~~--~~ 439 (675)
+.+-..+ .++.+..++|++.....- -..++|||+|||+|.-..++.. -.++.++++||||+|.+-++.| ..
T Consensus 184 ~~kkl~~-~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAP-LGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred Hhhhccc-ccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHH
Confidence 7664432 578899999998765543 2358999999999975544322 2356799999999999975333 23
Q ss_pred HHHHHHHh---hCCCCccEEEEecCCCHHHHHHHHHhCCC----CeEEeCCCccccCCCceEEEEecCCCCCCCCchhhh
Q 005837 440 VALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFPD----CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (675)
Q Consensus 440 ~~l~~il~---~~~~~~qiI~lSAT~~~~v~~~l~~~~~~----~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 512 (675)
..+.+.++ .....++++++|||+|.- .++..++.- ....+...+. +..+.+.++..... .........
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~-~~~~~~~~~ 334 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGK-KNRQQKKNI 334 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeeccccc--ccceeeeEEeeecc-cchhhhhhH
Confidence 33333332 234568999999999853 344444432 1122222222 22334444443333 111222222
Q ss_pred hhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCC------------------CeeEEEecCCCCHHHHH
Q 005837 513 FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET------------------RVRVLPFHAALDQETRL 574 (675)
Q Consensus 513 ~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~------------------~~~v~~lhg~m~~~eR~ 574 (675)
.....+.+.+++.. +.+++|||.+++.+...|+.|.+.....+ ...++.+|++|...+|.
T Consensus 335 d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~ 412 (1230)
T KOG0952|consen 335 DEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQ 412 (1230)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHH
Confidence 22344555555554 56899999999999999998876432110 03478899999999999
Q ss_pred HHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cCCCC------CHHHHHHHhccccc-CCCCccEEEEEE
Q 005837 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FDFPR------DPSEYVRRVGRTAR-GAGGTGKAFIFV 643 (675)
Q Consensus 575 ~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d~p~------s~~~y~Qr~GRagR-~~g~~g~~i~~~ 643 (675)
.+.+.|..|.++ ||+||..+++|+|+|+--++|- ||..+ ++-+.+|..||||| ..+..|.++++.
T Consensus 413 l~E~~F~~G~i~----vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiT 488 (1230)
T KOG0952|consen 413 LVEKEFKEGHIK----VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIIT 488 (1230)
T ss_pred HHHHHHhcCCce----EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEe
Confidence 999999999999 9999999999999997655553 55444 68889999999999 678899999999
Q ss_pred eCccHHHHHHHHH
Q 005837 644 VGKQVSLAQRIME 656 (675)
Q Consensus 644 ~~~d~~~~~~l~~ 656 (675)
+.+....|..++.
T Consensus 489 t~dkl~~Y~sLl~ 501 (1230)
T KOG0952|consen 489 TRDKLDHYESLLT 501 (1230)
T ss_pred cccHHHHHHHHHc
Confidence 9999888877754
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-32 Score=328.05 Aligned_cols=292 Identities=22% Similarity=0.285 Sum_probs=208.5
Q ss_pred HHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 279 l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
+.+.+.+....+|+++|..+++.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+||++|+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHHH
Confidence 344455544457999999999999999999999999999997 66666655532 256999999999999
Q ss_pred HHHHHHHHHhhcCCCCce---EEEEECCcchHHH---HHHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc
Q 005837 359 SQVLSNCRSLSKCGVPFR---SMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (675)
Q Consensus 359 ~Q~~~~l~~l~~~~~~~~---v~~l~gg~~~~~~---~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~ 431 (675)
.|+.+.++++... .++. +..++|+.+...+ +..+.. +++|+|+||++|.+.+.. +.. .++++||||||+
T Consensus 135 ~Qi~~~l~~l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 135 IQVAEKISSLAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHh
Confidence 9999999998763 2333 3346787766543 333443 599999999999877664 222 799999999999
Q ss_pred ccCC----------ccHHHH-HHHHH----------------------hhCCCCcc--EEEEecC-CCHHHHHHHHHhCC
Q 005837 432 LFND----------EDFEVA-LQSLI----------------------SSSPVTAQ--YLFVTAT-LPVEIYNKLVEVFP 475 (675)
Q Consensus 432 l~~~----------~~~~~~-l~~il----------------------~~~~~~~q--iI~lSAT-~~~~v~~~l~~~~~ 475 (675)
|+.. .+|..+ +..++ ...+...| ++++||| .|..+...+ +.
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l---~r 287 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL---FR 287 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH---cc
Confidence 9841 466553 33332 23344444 6678999 455443222 22
Q ss_pred CCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecch---hhHHHHHHHHHHh
Q 005837 476 DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKI---VTCRKVENILKRF 552 (675)
Q Consensus 476 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~---~~~~~l~~~L~~~ 552 (675)
+...+..........++.+.+.... .+...+..+++.. +.++||||+++ +.|+.++..|++.
T Consensus 288 ~ll~~~v~~~~~~~r~I~~~~~~~~--------------~~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~ 352 (1171)
T TIGR01054 288 ELLGFEVGGGSDTLRNVVDVYVEDE--------------DLKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH 352 (1171)
T ss_pred cccceEecCccccccceEEEEEecc--------------cHHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC
Confidence 2222222222223344544443221 1133456666654 36899999999 9999999999886
Q ss_pred cccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE----cccccccCCCCC-cCEEEEcCCCC
Q 005837 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC----TDRASRGIDFAG-VDHVVLFDFPR 617 (675)
Q Consensus 553 ~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p~ 617 (675)
+ +.+..+||+|++ .+++.|++|+++ |||| |++++||||+|+ |++|||||+|+
T Consensus 353 g-----~~a~~lhg~~~~----~~l~~Fr~G~~~----vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 353 G-----VKAVAYHATKPK----EDYEKFAEGEID----VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred C-----ceEEEEeCCCCH----HHHHHHHcCCCC----EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 5 889999999973 689999999998 9999 499999999999 89999998874
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=303.40 Aligned_cols=339 Identities=20% Similarity=0.302 Sum_probs=237.6
Q ss_pred CCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 288 ~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
...++.||.+.....+ ++|+||++|||+|||+++..-|++++...+ ++++|+++|++-|+.|+...+..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----------~~KiVF~aP~~pLv~QQ~a~~~~ 128 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----------KGKVVFLAPTRPLVNQQIACFSI 128 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----------cceEEEeeCCchHHHHHHHHHhh
Confidence 3468899999998888 999999999999999999999999998753 47999999999999999966666
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHHHHHHHHH
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSLI 446 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~~~l~~il 446 (675)
++. +..+....||.........+....+|+|+||+.+.+.+..... .++.+.++||||||+-.+.+.+...++.++
T Consensus 129 ~~~---~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 129 YLI---PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYL 205 (746)
T ss_pred ccC---cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHH
Confidence 554 3566667777655555556667789999999999877776433 368999999999999998888999998998
Q ss_pred hhCCCCccEEEEecCCCHH---HHHHHHHhCCC------------------CeEEeCC----------------------
Q 005837 447 SSSPVTAQYLFVTATLPVE---IYNKLVEVFPD------------------CKVVMGP---------------------- 483 (675)
Q Consensus 447 ~~~~~~~qiI~lSAT~~~~---v~~~l~~~~~~------------------~~~i~~~---------------------- 483 (675)
.......|+|++|||+... +.+.+..+.-. ...+...
T Consensus 206 ~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~ 285 (746)
T KOG0354|consen 206 DLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQ 285 (746)
T ss_pred HhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHH
Confidence 8777777999999998321 11111111000 0000000
Q ss_pred ----Ccccc---CCCceEEEEecC-----CCCCCCC-------------------------------------chh----
Q 005837 484 ----GMHRI---SPGLEEFLVDCS-----GDQESDK-------------------------------------TPE---- 510 (675)
Q Consensus 484 ----~~~~~---~~~i~~~~~~~~-----~~~~~~~-------------------------------------~~~---- 510 (675)
.+... .....++.+... ....... ...
T Consensus 286 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~ 365 (746)
T KOG0354|consen 286 LQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLK 365 (746)
T ss_pred HHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHH
Confidence 00000 000000000000 0000000 000
Q ss_pred -------------------------hhhhhHHHHHHHHH----HhCCCCceEEEecchhhHHHHHHHHHHhcccCC--Ce
Q 005837 511 -------------------------TAFLNKKSALLQLI----EKSPVSKTIVFCNKIVTCRKVENILKRFDRKET--RV 559 (675)
Q Consensus 511 -------------------------~~~~~k~~~l~~ll----~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~--~~ 559 (675)
.....|+..+.+++ ...+..++||||.++..+..+..+|......+. .+
T Consensus 366 ~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~ 445 (746)
T KOG0354|consen 366 LELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEI 445 (746)
T ss_pred HHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccce
Confidence 00011333333333 234467899999999999999999985321110 01
Q ss_pred eEEEec----CCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCC
Q 005837 560 RVLPFH----AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGG 635 (675)
Q Consensus 560 ~v~~lh----g~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~ 635 (675)
-++.-+ .+|++.++.++++.|++|.++ |||||++++.|+||+.|+.||-||...|+..++||+|| || .+
T Consensus 446 fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N----vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR--a~ 518 (746)
T KOG0354|consen 446 FIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN----VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR--AR 518 (746)
T ss_pred eeeccccccccccCHHHHHHHHHHHhCCCcc----EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc--cc
Confidence 122112 389999999999999999999 99999999999999999999999999999999999999 99 48
Q ss_pred ccEEEEEEeCcc
Q 005837 636 TGKAFIFVVGKQ 647 (675)
Q Consensus 636 ~g~~i~~~~~~d 647 (675)
.|+|++++...+
T Consensus 519 ns~~vll~t~~~ 530 (746)
T KOG0354|consen 519 NSKCVLLTTGSE 530 (746)
T ss_pred CCeEEEEEcchh
Confidence 899998888433
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=317.25 Aligned_cols=347 Identities=21% Similarity=0.263 Sum_probs=258.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH
Q 005837 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (675)
Q Consensus 277 ~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~ 356 (675)
..+...+.+.|+..++.+|.+|+..+.+|+|+||+.+||||||+||++|+++++.+.+ ..++|||.||++
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtnA 126 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTNA 126 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechhh
Confidence 3457788888899999999999999999999999999999999999999999998753 338999999999
Q ss_pred HHHHHHHHHHHhhcCCC-CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-c---ccccccceEEEEcCccc
Q 005837 357 LASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-G---ILQLINLRCAILDEVDI 431 (675)
Q Consensus 357 La~Q~~~~l~~l~~~~~-~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~---~~~l~~i~~IVIDEaH~ 431 (675)
|+++|.++++++..... .+....+.|++..........++++|+++||+||..++.+ . ...+.++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999999876433 5888899999888877777888999999999999874443 1 23466799999999999
Q ss_pred ccC--CccHHHHHHHHHhh---CCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 432 LFN--DEDFEVALQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 432 l~~--~~~~~~~l~~il~~---~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
+-+ +......+++++.. .+.+.|+|..|||+...- ++...++....... -...........++..........
T Consensus 207 YrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 207 YRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELA 284 (851)
T ss_pred ccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhh
Confidence 975 33444455555443 455889999999985432 23334433221221 122233334444444443222111
Q ss_pred CchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHH----HHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH
Q 005837 507 KTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVE----NILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~----~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F 580 (675)
.. ........+..++.. ..+-++|+|+.++..++.+. ..+...+ ......+..|+++|..++|.++...|
T Consensus 285 ~~---~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 285 ES---IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred hh---cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHH
Confidence 11 011222233333322 24568999999999999997 3333333 22225688999999999999999999
Q ss_pred hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 581 ~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
++|+.. ++++|++++-|||+.+++.||.++.|. ++.++.||.||||| .++.+..++.+.
T Consensus 361 ~~g~~~----~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR-~~~~~l~~~v~~ 420 (851)
T COG1205 361 KEGELL----GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGR-RGQESLVLVVLR 420 (851)
T ss_pred hcCCcc----EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccC-CCCCceEEEEeC
Confidence 999998 999999999999999999999999999 99999999999999 565666555555
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.9e-32 Score=320.30 Aligned_cols=332 Identities=20% Similarity=0.267 Sum_probs=235.9
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.++++||.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+|+++|+.|+.+.++++
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 46889999999988877 99999999999999999988877732 2458999999999999999999987
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
... ....+..++|+..... ...+....+|+|+||+.+...+....+.+.++++|||||||++.+...+...+..+. .
T Consensus 82 ~~~-~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~-~ 158 (773)
T PRK13766 82 LNI-PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH-E 158 (773)
T ss_pred hCC-CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH-h
Confidence 643 2346777888776553 334455689999999999877777777888999999999999985555555444443 3
Q ss_pred CCCCccEEEEecCCCHH---HHHHHHHhCCCCeEEeCCCccc-c-----CCCceEEEEecC-------------------
Q 005837 449 SPVTAQYLFVTATLPVE---IYNKLVEVFPDCKVVMGPGMHR-I-----SPGLEEFLVDCS------------------- 500 (675)
Q Consensus 449 ~~~~~qiI~lSAT~~~~---v~~~l~~~~~~~~~i~~~~~~~-~-----~~~i~~~~~~~~------------------- 500 (675)
.....++++||||+... +...+..++... +......+. . ...+....+...
T Consensus 159 ~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~-v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 159 DAKNPLVLGLTASPGSDEEKIKEVCENLGIEH-VEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHhCCceE-EEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 34467899999997422 222122211111 000000000 0 000000000000
Q ss_pred -----CCC-CCC---------------------Cch--------------------------------------------
Q 005837 501 -----GDQ-ESD---------------------KTP-------------------------------------------- 509 (675)
Q Consensus 501 -----~~~-~~~---------------------~~~-------------------------------------------- 509 (675)
... ... ...
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 000 000 000
Q ss_pred ------------------------hhhhhhHHHHHHHHHHh----CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeE
Q 005837 510 ------------------------ETAFLNKKSALLQLIEK----SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561 (675)
Q Consensus 510 ------------------------~~~~~~k~~~l~~ll~~----~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v 561 (675)
......|...|.+++.. ..+.++||||+++..|+.+++.|...+ +.+
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~-----~~~ 392 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG-----IKA 392 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC-----Cce
Confidence 00001234445555543 567899999999999999999997654 667
Q ss_pred EEecCC--------CCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCC
Q 005837 562 LPFHAA--------LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGA 633 (675)
Q Consensus 562 ~~lhg~--------m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~ 633 (675)
..+||. |++.+|.++++.|++|+.+ |||||+++++|+|+|++++||+||+|++...|+||+||+|| .
T Consensus 393 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~----vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR-~ 467 (773)
T PRK13766 393 VRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN----VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR-Q 467 (773)
T ss_pred EEEEccccccccCCCCHHHHHHHHHHHHcCCCC----EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCc-C
Confidence 777775 9999999999999999888 99999999999999999999999999999999999999999 3
Q ss_pred CCccEEEEEEeCcc
Q 005837 634 GGTGKAFIFVVGKQ 647 (675)
Q Consensus 634 g~~g~~i~~~~~~d 647 (675)
+.|.+++++....
T Consensus 468 -~~~~v~~l~~~~t 480 (773)
T PRK13766 468 -EEGRVVVLIAKGT 480 (773)
T ss_pred -CCCEEEEEEeCCC
Confidence 4589988887544
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.9e-32 Score=303.37 Aligned_cols=319 Identities=19% Similarity=0.161 Sum_probs=224.2
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.|+ .|+++|..+++.++.|+ |+.|.||+|||++|.+|++..... ++.++|++||++||.|.+.++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~------------G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA------------GLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc------------CCeEEEEcCcHHHHHHHHHHH
Confidence 344 68899999999999998 999999999999999999976532 568999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcc-------------------------cccc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI-------------------------LQLI 419 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~-------------------------~~l~ 419 (675)
..+..+ .++++.+++|+.+.. ......+++|+|+|..-| .++++... ....
T Consensus 165 ~~l~~~-lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEA-LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhh-cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 998875 689999999997643 444556799999999877 34444321 1235
Q ss_pred cceEEEEcCcccccC--------------Cc---cHHHHHHHHHhhCCC-------------------------------
Q 005837 420 NLRCAILDEVDILFN--------------DE---DFEVALQSLISSSPV------------------------------- 451 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~--------------~~---~~~~~l~~il~~~~~------------------------------- 451 (675)
.+.+.||||+|.++= .. .+......+...+..
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 578999999996521 00 011111111111100
Q ss_pred --------------------------------------------------------------------------------
Q 005837 452 -------------------------------------------------------------------------------- 451 (675)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (675)
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence
Q ss_pred ------CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHH
Q 005837 452 ------TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525 (675)
Q Consensus 452 ------~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 525 (675)
-.++-+||||..... ..+...+.-..+.+....... ....+..+. .....|...+.+++.
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~-~El~~~y~l~vv~IPt~kp~~-r~~~~~~v~------------~t~~~K~~aL~~~i~ 467 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVA-GELWSVYGLPVVRIPTNRPSQ-RRHLPDEVF------------LTAAAKWAAVAARVR 467 (656)
T ss_pred HHHHHhhHHHhcccCcChHHH-HHHHHHHCCCeEEeCCCCCcc-ceecCCEEE------------eCHHHHHHHHHHHHH
Confidence 024556666665443 333333322222221111110 000111111 112247777777776
Q ss_pred hC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCC
Q 005837 526 KS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGID 603 (675)
Q Consensus 526 ~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiD 603 (675)
.. .+.++||||+|++.++.++..|.+.+ +.+..+||.+.+.+ ..+..|..+... |+|||++++||+|
T Consensus 468 ~~~~~~~pvLIft~t~~~se~L~~~L~~~g-----i~~~~Lhg~~~~rE--~~ii~~ag~~g~----VlVATdmAgRGtD 536 (656)
T PRK12898 468 ELHAQGRPVLVGTRSVAASERLSALLREAG-----LPHQVLNAKQDAEE--AAIVARAGQRGR----ITVATNMAGRGTD 536 (656)
T ss_pred HHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-----CCEEEeeCCcHHHH--HHHHHHcCCCCc----EEEEccchhcccC
Confidence 53 25789999999999999999999866 88999999865544 444455544444 9999999999999
Q ss_pred CC---CcC-----EEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 604 FA---GVD-----HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 604 ip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
|+ +|. +||++++|.|...|.||+||+|| .|.+|.++.|++.+|.
T Consensus 537 I~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGR-qG~~G~s~~~is~eD~ 588 (656)
T PRK12898 537 IKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGR-QGDPGSYEAILSLEDD 588 (656)
T ss_pred cCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccC-CCCCeEEEEEechhHH
Confidence 99 776 99999999999999999999999 7999999999998763
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9.8e-32 Score=288.42 Aligned_cols=299 Identities=17% Similarity=0.235 Sum_probs=201.1
Q ss_pred HHHHHhhhhhcCCC--EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 294 IQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 294 iQ~~~i~~il~g~d--vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
+|.++++++.++.+ +++++|||||||+||++|++.. +.+++|++|+++|+.|+++.++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------------~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------------ENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------------CCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 49999999998864 7889999999999999998831 336899999999999999999887531
Q ss_pred ---CCCceEEEEECCcchHHH-H-------------------HHhhCCCcEEEeCHHHHHHHHHhc----c----ccccc
Q 005837 372 ---GVPFRSMVVTGGFRQKTQ-L-------------------ENLQEGVDVLIATPGRFMFLIKEG----I----LQLIN 420 (675)
Q Consensus 372 ---~~~~~v~~l~gg~~~~~~-~-------------------~~l~~~~~IlV~Tp~~L~~~l~~~----~----~~l~~ 420 (675)
..+..+..+.|.+..... . ......+.|+++||+.|..+++.. . ..+.+
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 124556666665322200 0 011236889999999998766531 1 12578
Q ss_pred ceEEEEcCcccccCCc-cHH---HHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHh--CCCCeEEeCCCc---------
Q 005837 421 LRCAILDEVDILFNDE-DFE---VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGM--------- 485 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~-~~~---~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~--~~~~~~i~~~~~--------- 485 (675)
+++|||||+|.+.... ... ..+..++.......+++++|||++..+...+... +... .....+.
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~-~~~v~g~~~~~~~~~~ 224 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVK-IAPIDGEKYQFPDNPE 224 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCce-eeeecCcccccCCChh
Confidence 9999999999987311 111 1223333333345799999999999888877765 3322 2111111
Q ss_pred ----------cccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc
Q 005837 486 ----------HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555 (675)
Q Consensus 486 ----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~ 555 (675)
....+.+.+.+.. ... ............+.+.++...++++||||++++.++.++..|++.+
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~~-~~~-----~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-- 296 (357)
T TIGR03158 225 LEADNKTQSFRPVLPPVELELIP-APD-----FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-- 296 (357)
T ss_pred hhccccccccceeccceEEEEEe-CCc-----hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC--
Confidence 0011233333332 110 0000011111223333334456799999999999999999998753
Q ss_pred CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccc
Q 005837 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTA 630 (675)
Q Consensus 556 ~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag 630 (675)
.++.+..+||.+++.+|.++. +.. |||||+++++|||+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 297 -~~~~~~~l~g~~~~~~R~~~~------~~~----iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 297 -LGDDIGRITGFAPKKDRERAM------QFD----ILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCceEEeeecCCCHHHHHHhc------cCC----EEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 125678899999999987653 445 99999999999999987 666 45 889999999999997
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.4e-31 Score=302.98 Aligned_cols=320 Identities=17% Similarity=0.184 Sum_probs=228.8
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.|+ .|+++|..+...++.|+ |+.|.||+|||+++.+|++..... |..++|++||++||.|.+.++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~------------G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE------------GKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc------------CCCeEEEeCCHHHHHHHHHHH
Confidence 455 79999999999988886 999999999999999999855543 568999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcc------cccccceEEEEcCcccccCCc--
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILFNDE-- 436 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~i~~IVIDEaH~l~~~~-- 436 (675)
..+..+ .++++.++.|+.+...+.+ ....++|+|+||+.| .++++... ..+..+.++||||||.++=|.
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 999886 6899999999988433322 234689999999998 45554422 356789999999999762100
Q ss_pred -------------cHHHHHHHHHhhCC-----------------------------------------------------
Q 005837 437 -------------DFEVALQSLISSSP----------------------------------------------------- 450 (675)
Q Consensus 437 -------------~~~~~l~~il~~~~----------------------------------------------------- 450 (675)
.+......+...+.
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~ 297 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHV 297 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHH
Confidence 00101111100000
Q ss_pred ---C-------------------------------------------------------------CccEEEEecCCCHHH
Q 005837 451 ---V-------------------------------------------------------------TAQYLFVTATLPVEI 466 (675)
Q Consensus 451 ---~-------------------------------------------------------------~~qiI~lSAT~~~~v 466 (675)
. -.++.+||+|...+-
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 0 013445555543222
Q ss_pred HHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHH
Q 005837 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRK 544 (675)
Q Consensus 467 ~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~ 544 (675)
..+...+.-..+.+..............+ ......|...+.+.+.. ..+.++||||+|++.++.
T Consensus 378 -~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i-------------~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~ 443 (790)
T PRK09200 378 -KEFFEVYNMEVVQIPTNRPIIRIDYPDKV-------------FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSET 443 (790)
T ss_pred -HHHHHHhCCcEEECCCCCCcccccCCCeE-------------EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 23333332221111111000000000000 11123577777777754 357789999999999999
Q ss_pred HHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC---CCcC-----EEEEcCCC
Q 005837 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF---AGVD-----HVVLFDFP 616 (675)
Q Consensus 545 l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi---p~v~-----~VI~~d~p 616 (675)
++..|.+.+ +.+..+||.+.+.++..+...+..|. |+|||++++||+|+ |+|. +||++++|
T Consensus 444 l~~~L~~~g-----i~~~~L~~~~~~~e~~~i~~ag~~g~------VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p 512 (790)
T PRK09200 444 FSKLLDEAG-----IPHNLLNAKNAAKEAQIIAEAGQKGA------VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERM 512 (790)
T ss_pred HHHHHHHCC-----CCEEEecCCccHHHHHHHHHcCCCCe------EEEEccchhcCcCCCcccccccccCcEEEeccCC
Confidence 999999865 88899999999999888888877663 99999999999999 7999 99999999
Q ss_pred CCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 617 ~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
.+...|.||+||+|| .|.+|.++.|++.+|.
T Consensus 513 ~s~r~y~qr~GRtGR-~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 513 ESRRVDLQLRGRSGR-QGDPGSSQFFISLEDD 543 (790)
T ss_pred CCHHHHHHhhccccC-CCCCeeEEEEEcchHH
Confidence 999999999999999 7999999999988663
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.4e-31 Score=315.72 Aligned_cols=310 Identities=17% Similarity=0.236 Sum_probs=208.6
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH----HHHHHHHHHHHH-
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA----ELASQVLSNCRS- 367 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr----~La~Q~~~~l~~- 367 (675)
.+..+++.++.+++.+||+|+||||||+ ++|.+.. +.. ....+.+++..|.| +||.++.+++..
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICL--ELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHH--HcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 3455667777778889999999999999 5773322 211 11234677778865 555555555543
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc-ccCCccHHHH-HHHH
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEVA-LQSL 445 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~-l~~~~~~~~~-l~~i 445 (675)
++. .+.+-.... .+ ....++|+|+||++|++.+.... .+.++++|||||||. ++ +.+|... ++.+
T Consensus 146 lG~-----~VGY~vrf~---~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsL-n~DfLLg~Lk~l 212 (1294)
T PRK11131 146 LGG-----CVGYKVRFN---DQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSL-NIDFILGYLKEL 212 (1294)
T ss_pred hcc-----eeceeecCc---cc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCcccccc-ccchHHHHHHHh
Confidence 222 111111111 11 13468999999999999887654 489999999999995 55 5666543 4444
Q ss_pred HhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHH--
Q 005837 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL-- 523 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l-- 523 (675)
+.. .++.|+|+||||++.+ .+.++|.+..++..++.. ..++.++......... .. ......+...
T Consensus 213 L~~-rpdlKvILmSATid~e---~fs~~F~~apvI~V~Gr~---~pVei~y~p~~~~~~~---~~---~d~l~~ll~~V~ 279 (1294)
T PRK11131 213 LPR-RPDLKVIITSATIDPE---RFSRHFNNAPIIEVSGRT---YPVEVRYRPIVEEADD---TE---RDQLQAIFDAVD 279 (1294)
T ss_pred hhc-CCCceEEEeeCCCCHH---HHHHHcCCCCEEEEcCcc---ccceEEEeecccccch---hh---HHHHHHHHHHHH
Confidence 433 2468999999999865 345566554444433321 2244444433221100 00 1122222222
Q ss_pred -HHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccC
Q 005837 524 -IEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602 (675)
Q Consensus 524 -l~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~Gi 602 (675)
+.....+.+||||++..+++.+++.|++.+.. ...+..+||+|++++|..+++. .|..+ |||||+++++||
T Consensus 280 ~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~--~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rk----IIVATNIAEtSI 351 (1294)
T PRK11131 280 ELGREGPGDILIFMSGEREIRDTADALNKLNLR--HTEILPLYARLSNSEQNRVFQS--HSGRR----IVLATNVAETSL 351 (1294)
T ss_pred HHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCC--cceEeecccCCCHHHHHHHhcc--cCCee----EEEeccHHhhcc
Confidence 22345678999999999999999999876422 2568899999999999999986 35555 999999999999
Q ss_pred CCCCcCEEEEcCC---------------C---CCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 603 DFAGVDHVVLFDF---------------P---RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 603 Dip~v~~VI~~d~---------------p---~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
|+|+|++||++++ | .|..+|.||+||||| . .+|.||.+|+..+..
T Consensus 352 TIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR-~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 352 TVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR-V-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC-C-CCcEEEEeCCHHHHH
Confidence 9999999999863 3 366899999999999 3 799999999876643
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=9.8e-31 Score=295.30 Aligned_cols=317 Identities=15% Similarity=0.132 Sum_probs=213.9
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
+|+|.+++..+..++..|+.|+||+|||++|.+|++..... +..++|++|+++||.|+.+++..+..+
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~------------g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT------------GKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc------------CCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 44455555544444447999999999999999998765543 346999999999999999999998775
Q ss_pred CCCceEEEEECCcc---hHHHHHHhhCCCcEEEeCHHHH-HHHHHh------cccccccceEEEEcCcccccCCc-----
Q 005837 372 GVPFRSMVVTGGFR---QKTQLENLQEGVDVLIATPGRF-MFLIKE------GILQLINLRCAILDEVDILFNDE----- 436 (675)
Q Consensus 372 ~~~~~v~~l~gg~~---~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~------~~~~l~~i~~IVIDEaH~l~~~~----- 436 (675)
.++.+...+++.. ..........+++|+|+||+.| .+++.. ....+..+.++||||||.|+-+.
T Consensus 138 -LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 138 -LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred -cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 6777877776522 2222333446799999999999 455543 12346789999999999773111
Q ss_pred ----------cHHHHHHHHHhhCCC--------C----------------------------------------------
Q 005837 437 ----------DFEVALQSLISSSPV--------T---------------------------------------------- 452 (675)
Q Consensus 437 ----------~~~~~l~~il~~~~~--------~---------------------------------------------- 452 (675)
.+......+.+.+.. .
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 011111112221111 0
Q ss_pred ---------------------------------------------------------------ccEEEEecCCCHHHHHH
Q 005837 453 ---------------------------------------------------------------AQYLFVTATLPVEIYNK 469 (675)
Q Consensus 453 ---------------------------------------------------------------~qiI~lSAT~~~~v~~~ 469 (675)
.++.+||+|...+- ..
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~-~E 375 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAE-KE 375 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHH-HH
Confidence 12333333332211 11
Q ss_pred HHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHH
Q 005837 470 LVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVEN 547 (675)
Q Consensus 470 l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~ 547 (675)
+...+.-.. +..|. +......+.+ .........|..++.+.+.. ..+.++||||+|++.++.++.
T Consensus 376 f~~iY~l~v-~~IPt------~kp~~r~d~~------d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~ 442 (762)
T TIGR03714 376 FIETYSLSV-VKIPT------NKPIIRIDYP------DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSE 442 (762)
T ss_pred HHHHhCCCE-EEcCC------CCCeeeeeCC------CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHH
Confidence 222221111 11110 0000000000 00111223577777777754 457799999999999999999
Q ss_pred HHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCC---------CcCEEEEcCCCCC
Q 005837 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA---------GVDHVVLFDFPRD 618 (675)
Q Consensus 548 ~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip---------~v~~VI~~d~p~s 618 (675)
.|.+.+ +.+..+||.+.+.++..+...++.|. |+|||++++||+|++ ++.+|++|++|..
T Consensus 443 ~L~~~g-----i~~~~L~a~~~~~E~~ii~~ag~~g~------VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ 511 (762)
T TIGR03714 443 LLLREG-----IPHNLLNAQNAAKEAQIIAEAGQKGA------VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENS 511 (762)
T ss_pred HHHHCC-----CCEEEecCCChHHHHHHHHHcCCCCe------EEEEccccccccCCCCCccccccCCeEEEEecCCCCc
Confidence 999876 78889999999999988888777764 999999999999999 9999999999988
Q ss_pred HHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 619 ~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
..+ .||+||+|| .|.+|.++.|++.+|.
T Consensus 512 rid-~qr~GRtGR-qG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 512 RVD-LQLRGRSGR-QGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHH-HHhhhcccC-CCCceeEEEEEccchh
Confidence 766 999999999 7999999999998763
No 78
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-31 Score=300.29 Aligned_cols=317 Identities=16% Similarity=0.129 Sum_probs=213.0
Q ss_pred CCChHHHHHHhhhhhc-C--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE-G--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~-g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
..+++||.+++..++. + ++.++++|||+|||++.+..+. .+ +.++|||||+..|+.||.+++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 3589999999999874 3 4789999999999999876543 22 236999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh--------cccccccceEEEEcCcccccCCcc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~--------~~~~l~~i~~IVIDEaH~l~~~~~ 437 (675)
.++... ....+..++|+..... .....|+|+|+.++.....+ ..+....|++||+||||++. .
T Consensus 319 ~~~~~l-~~~~I~~~tg~~k~~~-----~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A-- 389 (732)
T TIGR00603 319 KMWSTI-DDSQICRFTSDAKERF-----HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-A-- 389 (732)
T ss_pred HHhcCC-CCceEEEEecCccccc-----ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-H--
Confidence 987543 2345566666543221 12368999999987532211 12333578999999999997 3
Q ss_pred HHHHHHHHHhhCCCCccEEEEecCCCHHH--HHHHHHhCCCCeEEeCCCc-----cccCCCceEEEEecCCCC-------
Q 005837 438 FEVALQSLISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGM-----HRISPGLEEFLVDCSGDQ------- 503 (675)
Q Consensus 438 ~~~~l~~il~~~~~~~qiI~lSAT~~~~v--~~~l~~~~~~~~~i~~~~~-----~~~~~~i~~~~~~~~~~~------- 503 (675)
..++.++..+. ....++||||+..+. ...+..+++.. +..... ......+....+.+.-..
T Consensus 390 --~~fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~--vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl 464 (732)
T TIGR00603 390 --AMFRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPK--LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL 464 (732)
T ss_pred --HHHHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcCCe--eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH
Confidence 33444444443 344699999995322 12232233221 111111 011111111111111100
Q ss_pred ----CCCCchhhhhhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHH
Q 005837 504 ----ESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577 (675)
Q Consensus 504 ----~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~ 577 (675)
............|+..+..+++.+ .+.++||||.+...++.++..|. +..+||.+++.+|.+++
T Consensus 465 ~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----------~~~I~G~ts~~ER~~il 534 (732)
T TIGR00603 465 RENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----------KPFIYGPTSQQERMQIL 534 (732)
T ss_pred HhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----------CceEECCCCHHHHHHHH
Confidence 000111123345667777777654 67899999999888888877662 34589999999999999
Q ss_pred HHHhcC-CCCCCceEEEEcccccccCCCCCcCEEEEcCCC-CCHHHHHHHhcccccCCCCcc-------EEEEEEeCccH
Q 005837 578 KEFTTS-RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP-RDPSEYVRRVGRTARGAGGTG-------KAFIFVVGKQV 648 (675)
Q Consensus 578 ~~F~~g-~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~GRagR~~g~~g-------~~i~~~~~~d~ 648 (675)
+.|+.| .++ +||+|+++.+|||+|++++||+++.| .|..+|+||+||++| .+..| ..|.|++....
T Consensus 535 ~~Fr~~~~i~----vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR-~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 535 QNFQHNPKVN----TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILR-AKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHhCCCcc----EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhccccc-CCCCCccccccceEEEEecCCch
Confidence 999975 666 99999999999999999999999997 599999999999999 34333 34777776554
Q ss_pred H
Q 005837 649 S 649 (675)
Q Consensus 649 ~ 649 (675)
+
T Consensus 610 E 610 (732)
T TIGR00603 610 E 610 (732)
T ss_pred H
Confidence 4
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=3.5e-30 Score=289.04 Aligned_cols=317 Identities=18% Similarity=0.165 Sum_probs=223.1
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|..+...++.|+ |+.|+||+|||++|.+|++-.... +..++|++||++||.|.++++..+.
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 68899999988888775 999999999999999999533332 3369999999999999999999998
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc------ccccccceEEEEcCcccccCCccHH---
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFNDEDFE--- 439 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~i~~IVIDEaH~l~~~~~~~--- 439 (675)
.+ .++++.+++|+.+.......+ .++|+|+||+.| .++++.+ ...+..+.++||||+|.++-+....
T Consensus 122 ~~-LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 122 RF-LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred cc-CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 86 679999999998865544333 479999999999 7888765 3467889999999999764211100
Q ss_pred ------------HHHHHHHhhCCC--------C-----------------------------------------------
Q 005837 440 ------------VALQSLISSSPV--------T----------------------------------------------- 452 (675)
Q Consensus 440 ------------~~l~~il~~~~~--------~----------------------------------------------- 452 (675)
.....+.+.+.. .
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 001111111110 0
Q ss_pred --------------------------------------------------------------ccEEEEecCCCHHHHHHH
Q 005837 453 --------------------------------------------------------------AQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 453 --------------------------------------------------------------~qiI~lSAT~~~~v~~~l 470 (675)
.++.+||+|...+. ..+
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~-~E~ 357 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEE-EEF 357 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHH-HHH
Confidence 12223333322111 112
Q ss_pred HHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHH--hCCCCceEEEecchhhHHHHHHH
Q 005837 471 VEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENI 548 (675)
Q Consensus 471 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~--~~~~~k~IVF~~s~~~~~~l~~~ 548 (675)
...+.-..+.+. .+......+.+. . .......|..++.+.+. ...+.++||||++++.++.+++.
T Consensus 358 ~~iY~l~vv~IP-------tnkp~~R~d~~d-----~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~ 424 (745)
T TIGR00963 358 EKIYNLEVVVVP-------TNRPVIRKDLSD-----L-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNL 424 (745)
T ss_pred HHHhCCCEEEeC-------CCCCeeeeeCCC-----e-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH
Confidence 222111111110 000000000000 0 01112245556655542 23578999999999999999999
Q ss_pred HHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC-------cCEEEEcCCCCCHHH
Q 005837 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG-------VDHVVLFDFPRDPSE 621 (675)
Q Consensus 549 L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~-------v~~VI~~d~p~s~~~ 621 (675)
|.+.+ +....+|+. +.+|...+..|..+... |+|||++++||+||+. .-+||+++.|.|...
T Consensus 425 L~~~g-----i~~~~Lna~--q~~rEa~ii~~ag~~g~----VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri 493 (745)
T TIGR00963 425 LKERG-----IPHNVLNAK--NHEREAEIIAQAGRKGA----VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRI 493 (745)
T ss_pred HHHcC-----CCeEEeeCC--hHHHHHHHHHhcCCCce----EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHH
Confidence 99876 778889998 88999999999988877 9999999999999988 459999999999999
Q ss_pred HHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 622 YVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 622 y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
|.|++||+|| .|.+|.+..|++.+|.-
T Consensus 494 ~~q~~GRtGR-qG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 494 DNQLRGRSGR-QGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHHHhccccC-CCCCcceEEEEeccHHH
Confidence 9999999999 79999999999987743
No 80
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=4.6e-30 Score=304.08 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=215.2
Q ss_pred HHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCC
Q 005837 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (675)
Q Consensus 295 Q~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~ 374 (675)
..+++.++.+++.+||+|+||||||+ ++|.+. .+.. ....++++++.|+|..|..++.++.+......+
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~l--le~~-------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTT--QLPKIC--LELG-------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHH--HHcC-------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 35566667777889999999999999 456432 2211 122347888999999888888887775543333
Q ss_pred ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc-ccCCccHHHH-HHHHHhhCCCC
Q 005837 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEVA-LQSLISSSPVT 452 (675)
Q Consensus 375 ~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~-l~~~~~~~~~-l~~il~~~~~~ 452 (675)
-.+.+-...... ......|+|+|++.|++.+.... .+..+++|||||||. .+ +.+|... ++.++... +.
T Consensus 141 ~~VGY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL-~~D~LL~lLk~il~~r-pd 211 (1283)
T TIGR01967 141 EKVGYKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSL-NIDFLLGYLKQLLPRR-PD 211 (1283)
T ss_pred eEEeeEEcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhc-cchhHHHHHHHHHhhC-CC
Confidence 333332222221 12357899999999998887644 488999999999995 55 5666543 66665544 57
Q ss_pred ccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCce
Q 005837 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532 (675)
Q Consensus 453 ~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~ 532 (675)
.|+|+||||+..+ .+.++|.+..++..++.. ..+..++.......... ...........+..++.. ..+.+
T Consensus 212 LKlIlmSATld~~---~fa~~F~~apvI~V~Gr~---~PVev~Y~~~~~~~~~~--~~~~~~~i~~~I~~l~~~-~~GdI 282 (1283)
T TIGR01967 212 LKIIITSATIDPE---RFSRHFNNAPIIEVSGRT---YPVEVRYRPLVEEQEDD--DLDQLEAILDAVDELFAE-GPGDI 282 (1283)
T ss_pred CeEEEEeCCcCHH---HHHHHhcCCCEEEECCCc---ccceeEEecccccccch--hhhHHHHHHHHHHHHHhh-CCCCE
Confidence 8999999999864 455566655454443321 12333333221111000 000001112223333333 45789
Q ss_pred EEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE
Q 005837 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 533 IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~ 612 (675)
|||+++..+++.+++.|++... ..+.+..+||+|++++|.++++.+. ..+ |||||+++++|||+|+|++||+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~--~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rk----IVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNL--RHTEILPLYARLSNKEQQRVFQPHS--GRR----IVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCC--CCcEEEeccCCCCHHHHHHHhCCCC--Cce----EEEeccHHHhccccCCeeEEEe
Confidence 9999999999999999987642 2367899999999999999976542 234 9999999999999999999999
Q ss_pred cCCCC------------------CHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 613 FDFPR------------------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 613 ~d~p~------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
+++++ |..+|.||+|||||. ++|.||.+|+..+.
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~--~~G~cyRLyte~~~ 406 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV--APGICIRLYSEEDF 406 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCC--CCceEEEecCHHHH
Confidence 98543 678999999999993 49999999987654
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.9e-28 Score=278.79 Aligned_cols=323 Identities=19% Similarity=0.229 Sum_probs=258.1
Q ss_pred CHHHHHHHHH-CCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 276 SDYMIESLKR-QNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 276 ~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+.+..+.+.+ +.| .-|+-|..||..+.+. .|-+|||.-|.|||.+++-+++..+.. |.+|
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~------------GKQV 646 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD------------GKQV 646 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC------------CCeE
Confidence 3444555544 333 5689999999998753 689999999999999999999887754 5699
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh----CCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~----~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
.|+|||.-||+|.++.+++-.. +.++++..++.-.+.+++...++ ...||||+|.--| ++...+.++.++
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLl 720 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLL 720 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeE
Confidence 9999999999999999988665 36889999988877776654332 4699999998644 567789999999
Q ss_pred EEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC
Q 005837 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (675)
Q Consensus 425 VIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 504 (675)
||||-|+.. ..-+.-++.+..++-++-||||+-+...+....-+.+..++..+...+.+ +..++......
T Consensus 721 IIDEEqRFG------Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~~-- 790 (1139)
T COG1197 721 IIDEEQRFG------VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDDL-- 790 (1139)
T ss_pred EEechhhcC------ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEecCChH--
Confidence 999977664 44445555666788899999999888877777777777788888777643 44444432211
Q ss_pred CCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 505 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
-..+++..- ...++++...+|.++.++.++..|+++.+. .++++.||.|+..+-.+++..|.+|+
T Consensus 791 ----------~ireAI~RE--l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE---arI~vaHGQM~e~eLE~vM~~F~~g~ 855 (1139)
T COG1197 791 ----------LIREAILRE--LLRGGQVFYVHNRVESIEKKAERLRELVPE---ARIAVAHGQMRERELEEVMLDFYNGE 855 (1139)
T ss_pred ----------HHHHHHHHH--HhcCCEEEEEecchhhHHHHHHHHHHhCCc---eEEEEeecCCCHHHHHHHHHHHHcCC
Confidence 122223322 234788999999999999999999998865 57888899999999999999999999
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
.+ |||||.+.+.|||||+++.+|..+..+ .+.+.+|..||+|| ....+.||++|.+.+
T Consensus 856 ~d----VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGR-S~~~AYAYfl~p~~k 914 (1139)
T COG1197 856 YD----VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR-SNKQAYAYFLYPPQK 914 (1139)
T ss_pred CC----EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCC-ccceEEEEEeecCcc
Confidence 99 999999999999999999999887765 89999999999999 789999999988644
No 82
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=277.61 Aligned_cols=352 Identities=16% Similarity=0.262 Sum_probs=250.1
Q ss_pred CCCCChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
|...+..+|..+..+.+.+ .|+++|||||+|||-++++-+++.+..+..... .-.....+++|++|..+|++.+...+
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dg-s~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDG-SVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccccc-ceecccceEEEEeeHHHHHHHHHHHH
Confidence 4556889999999998876 799999999999999999999998876532111 11123458999999999999999988
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh--cccccccceEEEEcCcccccCCcc--HHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDED--FEVA 441 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~--~~~~l~~i~~IVIDEaH~l~~~~~--~~~~ 441 (675)
.+.... .++.+..++|+.....+.. ....|+|+|||++.-.-++ .....+-++++||||.|.+-++.| ....
T Consensus 385 SkRla~-~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESI 460 (1674)
T KOG0951|consen 385 SKRLAP-LGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESI 460 (1674)
T ss_pred Hhhccc-cCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHH
Confidence 776553 6789999999976443321 2478999999999755554 223355688999999999964333 2233
Q ss_pred HHHHHhh---CCCCccEEEEecCCCHHHHHHHHHhC---CCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhh
Q 005837 442 LQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLN 515 (675)
Q Consensus 442 l~~il~~---~~~~~qiI~lSAT~~~~v~~~l~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 515 (675)
+.+.+.+ ....++++++|||+|.-. ++..++ +.....+.+.+. +..+.+.++.+..... ...+..
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATLPNy~--DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~-----~~~~qa 531 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATLPNYE--DVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKP-----LKRFQA 531 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccCCchh--hhHHHhccCcccccccCcccC--cCCccceEeccccCCc-----hHHHHH
Confidence 3343333 344789999999998532 333322 222223332222 2345555555443221 111112
Q ss_pred HH-HHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhc----------ccC----------------------CCeeEE
Q 005837 516 KK-SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD----------RKE----------------------TRVRVL 562 (675)
Q Consensus 516 k~-~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~----------~~~----------------------~~~~v~ 562 (675)
.. .++.++++....+++|||+.+++++...|+.++... ..+ ..+.++
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 22 344455666666899999999999998888887321 111 115689
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cCCC------CCHHHHHHHhccccc-
Q 005837 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FDFP------RDPSEYVRRVGRTAR- 631 (675)
Q Consensus 563 ~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d~p------~s~~~y~Qr~GRagR- 631 (675)
.+|++|+..+|..+.+.|..|.++ |||+|..++||+|+|+-.++|- |+.- -++.+.+||.|||||
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iq----vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQ----VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCcee----EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 999999999999999999999999 9999999999999998777665 5543 389999999999999
Q ss_pred CCCCccEEEEEEeCccHHHHHHHHH
Q 005837 632 GAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 632 ~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
...+.|..++.....+..++..++.
T Consensus 688 ~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHHhhh
Confidence 5567888888888888777766543
No 83
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=270.90 Aligned_cols=335 Identities=18% Similarity=0.245 Sum_probs=239.5
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+-.+|++||.++..|.++++.|+|.+|||+++..++.-.. .++.+++|.+|-++|-+|.++.+++-.
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------------hhccceEecchhhhhccchHHHHHHhc
Confidence 57789999999999999999999999999999876654332 235699999999999999999998854
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
.. +.+++|+..... .+.++|+|.|.|.+++-++.--++++.+||+||+|.+. +.........++-.+
T Consensus 365 ~D-----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiN-D~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 365 GD-----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIN-DVERGVVWEEVIIML 431 (1248)
T ss_pred cc-----cceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecc-cccccccceeeeeec
Confidence 32 448888876544 47899999999999998887778999999999999998 667777788888889
Q ss_pred CCCccEEEEecCCCHHHH--HHHHHhCCCCeEEeCCCccccCCCceEEEEecCC--------------------CCC---
Q 005837 450 PVTAQYLFVTATLPVEIY--NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG--------------------DQE--- 504 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~v~--~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--------------------~~~--- 504 (675)
|.++++|++|||.|.... .++-+. .+-.+.+.....+. ..+++++..... +..
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRt-K~K~IyViST~kRP-VPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRT-KQKTIYVISTSKRP-VPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhc-cCceEEEEecCCCc-cceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 999999999999986542 222222 22222222221111 112222111000 000
Q ss_pred -------------------CCCchhhhh-----------h---hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHH
Q 005837 505 -------------------SDKTPETAF-----------L---NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551 (675)
Q Consensus 505 -------------------~~~~~~~~~-----------~---~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~ 551 (675)
......... . .....+...+++..--++||||.|++.|+..+++|..
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhc
Confidence 000000000 0 1133344445555566899999999999999999976
Q ss_pred hcccCCC----------------------------------eeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc
Q 005837 552 FDRKETR----------------------------------VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597 (675)
Q Consensus 552 ~~~~~~~----------------------------------~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~ 597 (675)
....... -.++.+||++-+--+.-|...|..|-++ ||+||.+
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK----VLFATET 665 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK----VLFATET 665 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE----EEeehhh
Confidence 4322111 2488999999999999999999999999 9999999
Q ss_pred ccccCCCCCcCEEEEcCCCC---------CHHHHHHHhccccc-CCCCccEEEEEEeCc--cHHHHHHHHH
Q 005837 598 ASRGIDFAGVDHVVLFDFPR---------DPSEYVRRVGRTAR-GAGGTGKAFIFVVGK--QVSLAQRIME 656 (675)
Q Consensus 598 ~~~GiDip~v~~VI~~d~p~---------s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~--d~~~~~~l~~ 656 (675)
+++|+|.|. +.||+-.+.+ .+-+|.||+||||| +-...|++++++... +.+-+++++.
T Consensus 666 FAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 666 FAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred hhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 999999995 4555444433 67899999999999 444788888887643 4555555543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=1.1e-27 Score=275.69 Aligned_cols=327 Identities=19% Similarity=0.213 Sum_probs=219.7
Q ss_pred CChHHHHHHhhhhhcC---CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g---~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
.+++.|.++++.+.++ +++++.|+||||||.+|+.++.+.+.. +.++||++|+++|+.|+.+.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------------g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------------GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHH
Confidence 5789999999999874 789999999999999998887766643 4589999999999999999998
Q ss_pred HhhcCCCCceEEEEECCcchHHHH---HHh-hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCC--ccHHH
Q 005837 367 SLSKCGVPFRSMVVTGGFRQKTQL---ENL-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDFEV 440 (675)
Q Consensus 367 ~l~~~~~~~~v~~l~gg~~~~~~~---~~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~--~~~~~ 440 (675)
+.. +..+..++|+.+..... ..+ ....+|+|+|++.+. ..+.++++|||||+|..... .....
T Consensus 212 ~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 212 ARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 753 34678888887665432 222 345899999998763 45788999999999976521 11111
Q ss_pred HHHH--HHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCC-Ccc-ccCCCceEEEEecCCCCCCCCchhhhhhhH
Q 005837 441 ALQS--LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP-GMH-RISPGLEEFLVDCSGDQESDKTPETAFLNK 516 (675)
Q Consensus 441 ~l~~--il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k 516 (675)
..+. +......+.++|++|||++.+.+..+.. +....+... ... ...+.+ .+++....... ..........
T Consensus 281 ~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~-~~~~~ls~~l 355 (679)
T PRK05580 281 HARDLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV--EIIDMRELLRG-ENGSFLSPPL 355 (679)
T ss_pred cHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE--EEEechhhhhh-cccCCCCHHH
Confidence 1222 2233456889999999998887655432 111111111 111 111111 22221110000 0000000112
Q ss_pred HHHHHHHHHhCCCCceEEEecchh--------------------------------------------------------
Q 005837 517 KSALLQLIEKSPVSKTIVFCNKIV-------------------------------------------------------- 540 (675)
Q Consensus 517 ~~~l~~ll~~~~~~k~IVF~~s~~-------------------------------------------------------- 540 (675)
...+.+.+. .+.++|||+|.+.
T Consensus 356 ~~~i~~~l~--~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 356 LEAIKQRLE--RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred HHHHHHHHH--cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 222222222 3457888887532
Q ss_pred ----hHHHHHHHHHHhcccCCCeeEEEecCCCC--HHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcC
Q 005837 541 ----TCRKVENILKRFDRKETRVRVLPFHAALD--QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614 (675)
Q Consensus 541 ----~~~~l~~~L~~~~~~~~~~~v~~lhg~m~--~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d 614 (675)
-++.+++.|+++.+. ..+..+|+++. ..++.++++.|++|+.+ |||+|+++++|+|+|+|.+|+.++
T Consensus 434 ~~g~G~e~~~e~l~~~fp~---~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~----ILVgT~~iakG~d~p~v~lV~il~ 506 (679)
T PRK05580 434 PVGPGTERLEEELAELFPE---ARILRIDRDTTRRKGALEQLLAQFARGEAD----ILIGTQMLAKGHDFPNVTLVGVLD 506 (679)
T ss_pred EeeccHHHHHHHHHHhCCC---CcEEEEeccccccchhHHHHHHHHhcCCCC----EEEEChhhccCCCCCCcCEEEEEc
Confidence 346777777776432 67889999986 46789999999999988 999999999999999999996554
Q ss_pred C--CC----------CHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHH
Q 005837 615 F--PR----------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654 (675)
Q Consensus 615 ~--p~----------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l 654 (675)
. +- ..+.|+|++||+|| .+..|.+++.....+...++.+
T Consensus 507 aD~~l~~pdfra~Er~~~~l~q~~GRagR-~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 507 ADLGLFSPDFRASERTFQLLTQVAGRAGR-AEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred CchhccCCccchHHHHHHHHHHHHhhccC-CCCCCEEEEEeCCCCCHHHHHH
Confidence 3 32 23678999999999 7899999988776554444333
No 85
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=9.4e-28 Score=280.06 Aligned_cols=349 Identities=21% Similarity=0.234 Sum_probs=223.4
Q ss_pred CChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
.|.|+|..+...++.. ..++++.++|.|||+.+.+.+.+.+.. +...++|||||. .|+.||..++.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~----------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT----------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc----------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 5889999998877653 478999999999999886655444433 223489999997 799999888865
Q ss_pred hhcCCCCceEEEEECCcchHHHHH---HhhCCCcEEEeCHHHHHHHHH-hcccccccceEEEEcCcccccCCc-cHHHHH
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLE---NLQEGVDVLIATPGRFMFLIK-EGILQLINLRCAILDEVDILFNDE-DFEVAL 442 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~---~l~~~~~IlV~Tp~~L~~~l~-~~~~~l~~i~~IVIDEaH~l~~~~-~~~~~l 442 (675)
... +...++.++. ...... ......+++|+|.+.+..... ...+.-..|+++||||||++.... .....+
T Consensus 221 kF~----l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 221 RFN----LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HhC----CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 322 2222222221 111000 111236899999998864221 112333479999999999996311 111223
Q ss_pred HHHHhhCCCCccEEEEecCCCH----HHHHHH---------------------------------------------HHh
Q 005837 443 QSLISSSPVTAQYLFVTATLPV----EIYNKL---------------------------------------------VEV 473 (675)
Q Consensus 443 ~~il~~~~~~~qiI~lSAT~~~----~v~~~l---------------------------------------------~~~ 473 (675)
+.+.........++++|||+-. +.+..+ ..+
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 4333323334568999999821 111100 000
Q ss_pred CCCC----------------------------------eEEeCCCc---cccCCC-ceEEEEecCCCCCCC---------
Q 005837 474 FPDC----------------------------------KVVMGPGM---HRISPG-LEEFLVDCSGDQESD--------- 506 (675)
Q Consensus 474 ~~~~----------------------------------~~i~~~~~---~~~~~~-i~~~~~~~~~~~~~~--------- 506 (675)
+++. .+++.... ...+.. +..+.+.....+...
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~ 455 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARA 455 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHH
Confidence 0000 00000000 000000 000000000000000
Q ss_pred ---Cch------------hhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHH
Q 005837 507 ---KTP------------ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQE 571 (675)
Q Consensus 507 ---~~~------------~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~ 571 (675)
..+ ......|...|.++++.....++||||+++..+..+++.|+.. .++.+..+||+|++.
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER----EGIRAAVFHEGMSII 531 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc----cCeeEEEEECCCCHH
Confidence 000 0001135667788888777889999999999999999999542 128899999999999
Q ss_pred HHHHHHHHHhcCC--CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 572 TRLANMKEFTTSR--SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 572 eR~~v~~~F~~g~--~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
+|.++++.|+++. .+ |||||+++++|+|++.+++||+||+|+++..|.||+||++| .|+.+.+.+++...+..
T Consensus 532 eR~~~~~~F~~~~~~~~----VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R-iGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQ----VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR-IGQKHDIQIHVPYLEGT 606 (956)
T ss_pred HHHHHHHHHhcCCCCcc----EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc-CCCCceEEEEEccCCCC
Confidence 9999999999853 55 99999999999999999999999999999999999999999 79999998888877766
Q ss_pred HHHHHHHHhcCCCC
Q 005837 650 LAQRIMERNRKGHP 663 (675)
Q Consensus 650 ~~~~l~~~~~~~~~ 663 (675)
..+.+...+.++..
T Consensus 607 ~~e~i~~~~~~~l~ 620 (956)
T PRK04914 607 AQERLFRWYHEGLN 620 (956)
T ss_pred HHHHHHHHHhhhcC
Confidence 67777766665443
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.7e-27 Score=258.85 Aligned_cols=344 Identities=18% Similarity=0.255 Sum_probs=251.2
Q ss_pred CCHHHHHHH-HHCCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 275 CSDYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 275 l~~~l~~~l-~~~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
...++.+.+ ..+.| ++|..|++++.-|... .+-+++|.-|||||++++++++..+.. |.+
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~------------G~Q 313 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA------------GYQ 313 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc------------CCe
Confidence 334455555 44555 6999999999998864 578999999999999999999988754 669
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---HhhC-CCcEEEeCHHHHHHHHHhcccccccceE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQE-GVDVLIATPGRFMFLIKEGILQLINLRC 423 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~ 423 (675)
+..++||.-||.|.+..+.++... .++++..++|..+...... .+.. ..+|+|+|..-+ +....+.++.+
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgL 387 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGL 387 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeE
Confidence 999999999999999999998874 5689999999987765543 3333 499999998643 55678999999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCCC-CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCC
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~~-~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~ 502 (675)
+||||=|++. ..-+..+..... .+.+++||||+-+.... ...+.+..+-+....-.-...+....+..
T Consensus 388 VIiDEQHRFG------V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~--- 456 (677)
T COG1200 388 VIIDEQHRFG------VHQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPH--- 456 (677)
T ss_pred EEEecccccc------HHHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecc---
Confidence 9999977663 455555555665 67889999999766543 23343322222111111111233333322
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHH--------HHHHHHHHhcccCCCeeEEEecCCCCHHH
Q 005837 503 QESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCR--------KVENILKRFDRKETRVRVLPFHAALDQET 572 (675)
Q Consensus 503 ~~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~--------~l~~~L~~~~~~~~~~~v~~lhg~m~~~e 572 (675)
+....+.+.+.+ ..+.++.|.|+-+++.+ .++..|+... .++.++.+||.|+.++
T Consensus 457 ------------~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~---~~~~vgL~HGrm~~~e 521 (677)
T COG1200 457 ------------ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFL---PELKVGLVHGRMKPAE 521 (677)
T ss_pred ------------ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHc---ccceeEEEecCCChHH
Confidence 122223333322 24678999999887654 4455565433 3378999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEeCcc-HH-
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VS- 649 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~- 649 (675)
+.+++++|++|+++ |||||.+.+.|||+|++.++|..+.-. ...+..|-.||+|| ++..+.|++++.+.. ..
T Consensus 522 Kd~vM~~Fk~~e~~----ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGR-G~~qSyC~Ll~~~~~~~~a 596 (677)
T COG1200 522 KDAVMEAFKEGEID----ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR-GDLQSYCVLLYKPPLSEVA 596 (677)
T ss_pred HHHHHHHHHcCCCc----EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCC-CCcceEEEEEeCCCCChhH
Confidence 99999999999999 999999999999999999999887643 78999999999999 789999999998766 22
Q ss_pred -HHHHHHHHhcCCCCCCCCC
Q 005837 650 -LAQRIMERNRKGHPLHDVP 668 (675)
Q Consensus 650 -~~~~l~~~~~~~~~~~~l~ 668 (675)
.--+++.....++.+.+.+
T Consensus 597 ~~RL~im~~t~DGF~IAE~D 616 (677)
T COG1200 597 KQRLKIMRETTDGFVIAEED 616 (677)
T ss_pred HHHHHHHHhcCCcceehhhh
Confidence 2223455666677665543
No 87
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.8e-27 Score=256.04 Aligned_cols=316 Identities=19% Similarity=0.242 Sum_probs=233.5
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
+.+-.+.+..+.+++.+||+|+||||||+. +| +.+.+..+ ...+++.+..|+|..|..+++++.+-...
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~-------~~~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGF-------ASSGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhccc-------ccCCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 345567788888899999999999999994 45 55555432 23446999999999999888888775443
Q ss_pred CCC--ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCcc-HHHHHHHHHhh
Q 005837 372 GVP--FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-FEVALQSLISS 448 (675)
Q Consensus 372 ~~~--~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~-~~~~l~~il~~ 448 (675)
..+ +-+.+.+.+.... ...|.++|.++|++.+.... .+.++++|||||||.-.-..+ ....++++++.
T Consensus 122 ~lG~~VGY~IRFed~ts~--------~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 122 QLGEEVGYTIRFEDSTSK--------DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred CcCceeeeEEEecccCCC--------ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 333 4445555555444 35899999999997776533 488999999999996531111 22335555443
Q ss_pred CCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCC
Q 005837 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP 528 (675)
Q Consensus 449 ~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 528 (675)
. +..++|++|||+..+ .+..+|.++.++..++.. ..++.++.... ......+.+..+.+++...+
T Consensus 193 R-~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p--------~~dYv~a~~~tv~~Ih~~E~ 257 (674)
T KOG0922|consen 193 R-PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEP--------TADYVDAALITVIQIHLTEP 257 (674)
T ss_pred C-CCceEEEEeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCC--------chhhHHHHHHHHHHHHccCC
Confidence 3 468999999999866 455677776666655432 22333333211 11222356677788887888
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCC---CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKET---RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA 605 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~---~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip 605 (675)
.+-+|||.+.+++++.+++.|.+...... ..-++++||.|+.+++.++++.-..|..+ |+++|++++..|.|+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RK----vIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRK----VILSTNIAETSLTID 333 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcce----EEEEcceeeeeEEec
Confidence 88999999999999999999988643221 12467899999999999999999999888 999999999999999
Q ss_pred CcCEEEEcCC------------------CCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 606 GVDHVVLFDF------------------PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 606 ~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
++.+||+-++ |-|..+-.||.||||| .++|+||.+|+.++.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGR--t~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGR--TGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCC--CCCceEEEeeeHHHH
Confidence 9999999654 3378889999999999 589999999997664
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=4.5e-26 Score=264.54 Aligned_cols=327 Identities=19% Similarity=0.238 Sum_probs=205.8
Q ss_pred CCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 288 ~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
...|+|+|..+.........+|+.+|||+|||.++++.+...+.. ....+++|..||+++++++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~----------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ----------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 458999999886554455678999999999999988776644332 2345899999999999999999887
Q ss_pred hhcCC-CCceEEEEECCcchHH-----------------------HHHH-hhC---CCcEEEeCHHHHHHHH-Hhccccc
Q 005837 368 LSKCG-VPFRSMVVTGGFRQKT-----------------------QLEN-LQE---GVDVLIATPGRFMFLI-KEGILQL 418 (675)
Q Consensus 368 l~~~~-~~~~v~~l~gg~~~~~-----------------------~~~~-l~~---~~~IlV~Tp~~L~~~l-~~~~~~l 418 (675)
+.... ....+.++.|...... .+-. ..+ -.+|+|+|..+++... ..+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 43311 1234566665543111 1100 011 1689999999987433 2222222
Q ss_pred cc----ceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCC-Ccccc----
Q 005837 419 IN----LRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP-GMHRI---- 488 (675)
Q Consensus 419 ~~----i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~-~~~~~---- 488 (675)
.. -++|||||+|.+. ..+...+..+++.+ ....++|+||||+|....+.+...+......... .+...
T Consensus 434 R~~~La~svvIiDEVHAyD--~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAYD--AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred HHHhhccCeEEEechhhCC--HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 22 3489999999985 33444555555443 2357899999999998887776654321000000 00000
Q ss_pred CCCceEEEEecCCCC-CCCCchh------hhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCee
Q 005837 489 SPGLEEFLVDCSGDQ-ESDKTPE------TAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560 (675)
Q Consensus 489 ~~~i~~~~~~~~~~~-~~~~~~~------~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~ 560 (675)
......+........ ....... .........+..+++. ..++++||||||++.|+.+++.|++.... ...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~--~~~ 589 (878)
T PRK09694 512 VNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT--QVD 589 (878)
T ss_pred cccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC--Cce
Confidence 000000000000000 0000000 0000112223333332 34678999999999999999999875321 257
Q ss_pred EEEecCCCCHHHH----HHHHHHH-hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccC
Q 005837 561 VLPFHAALDQETR----LANMKEF-TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG 632 (675)
Q Consensus 561 v~~lhg~m~~~eR----~~v~~~F-~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 632 (675)
+..+|+.++..+| .++++.| ++|+.. ...|||||+++++|+|+ +++++|....| ++.++||+||+||.
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~-~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~ 662 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRN-QGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRH 662 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcC-CCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCC
Confidence 8999999999999 4567788 555431 23599999999999999 68999998888 89999999999993
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.5e-28 Score=261.79 Aligned_cols=336 Identities=19% Similarity=0.260 Sum_probs=243.8
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+-|+|..+|..+-+++++++.|.|.+|||.++-.++.+.+++.+ +++|.+|-++|-+|.++.+.+-.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ------------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ------------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC------------eEEeeChhhhhcchhHHHHHHHh
Confidence 467899999999999999999999999999999999988887754 99999999999999999987755
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
+. +.+++|+.+... .+..+|+|.+.|..++-++.-.+..+.++|+||+|.|- +.........-+-.+
T Consensus 197 ~D-----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMR-DkERGVVWEETIIll 263 (1041)
T KOG0948|consen 197 KD-----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMR-DKERGVVWEETIILL 263 (1041)
T ss_pred cc-----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcc-ccccceeeeeeEEec
Confidence 43 778888877544 47899999999999988877778899999999999997 444444444445567
Q ss_pred CCCccEEEEecCCCHHHH--HHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC------chhhhhh-------
Q 005837 450 PVTAQYLFVTATLPVEIY--NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK------TPETAFL------- 514 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~v~--~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~------- 514 (675)
+.+.+.+++|||+|.... +++..+-..+..++-..+.. -.+.|+.+...++..... ..+..+.
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 889999999999997642 33334333333332222211 223444333222111000 0000000
Q ss_pred ---------------------------hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCC---------
Q 005837 515 ---------------------------NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR--------- 558 (675)
Q Consensus 515 ---------------------------~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~--------- 558 (675)
.....+..++-.....++|||+.|+++|+.+|-.+.++..+...
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 01224455555566789999999999999999888765432111
Q ss_pred -------------------------eeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE-
Q 005837 559 -------------------------VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL- 612 (675)
Q Consensus 559 -------------------------~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~- 612 (675)
-.++.+|+++-+--+.-+.-.|++|.++ ||+||.+++.|+|.|+-.+|+-
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvK----vLFATETFsiGLNMPAkTVvFT~ 497 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVK----VLFATETFSIGLNMPAKTVVFTA 497 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHH----HHHhhhhhhhccCCcceeEEEee
Confidence 2488999999999999999999999999 9999999999999996554442
Q ss_pred ---cCCCC----CHHHHHHHhccccc-CCCCccEEEEEEeCc-cHHHHHHHHH
Q 005837 613 ---FDFPR----DPSEYVRRVGRTAR-GAGGTGKAFIFVVGK-QVSLAQRIME 656 (675)
Q Consensus 613 ---~d~p~----s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~-d~~~~~~l~~ 656 (675)
||--. |--+|+||+||||| +....|.|+++++.. +....+.++.
T Consensus 498 ~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 498 VRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred ccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 22111 56689999999999 445899999998753 3445555554
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=3.5e-27 Score=259.45 Aligned_cols=308 Identities=19% Similarity=0.212 Sum_probs=206.3
Q ss_pred CCChHHHHHHhhhhhc----CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~----g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
..++++|++++.++.+ ++..++++|||+|||.+++..+.. + +..+|||||+++|+.||.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~--------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L--------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h--------------cCCEEEEECcHHHHHHHHHH
Confidence 3589999999999998 889999999999999987665442 2 22499999999999999877
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHH
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~ 444 (675)
+.+..... -.+..+.|+...... ..|.|+|.+.+........+....+.+||+||||++. ...+......
T Consensus 100 ~~~~~~~~--~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-a~~~~~~~~~ 169 (442)
T COG1061 100 LKKFLLLN--DEIGIYGGGEKELEP-------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-APSYRRILEL 169 (442)
T ss_pred HHHhcCCc--cccceecCceeccCC-------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC-cHHHHHHHHh
Confidence 77754421 123333333322111 4699999999976421122334479999999999998 3344443333
Q ss_pred HHhhCCCCccEEEEecCCCHHHH---HHHHHhCCCCeEEeCCCcc-----ccCCCceEEEEecCCCCCCC----------
Q 005837 445 LISSSPVTAQYLFVTATLPVEIY---NKLVEVFPDCKVVMGPGMH-----RISPGLEEFLVDCSGDQESD---------- 506 (675)
Q Consensus 445 il~~~~~~~qiI~lSAT~~~~v~---~~l~~~~~~~~~i~~~~~~-----~~~~~i~~~~~~~~~~~~~~---------- 506 (675)
+ .....+++||||++.... ..+...++ . .+...... ..........+.........
T Consensus 170 ~----~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~-~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 170 L----SAAYPRLGLTATPEREDGGRIGDLFDLIG-P-IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred h----hcccceeeeccCceeecCCchhHHHHhcC-C-eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 3 222228999999864331 12222222 1 11111100 11111122222221000000
Q ss_pred ----------------CchhhhhhhHHHHHHHHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCC
Q 005837 507 ----------------KTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569 (675)
Q Consensus 507 ----------------~~~~~~~~~k~~~l~~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~ 569 (675)
.........+...+..++..+ .+.+++|||.+..+++.++..+..-+ + +..+.+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~-----~-~~~it~~t~ 317 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG-----I-VEAITGETP 317 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC-----c-eEEEECCCC
Confidence 000111112334445555554 46799999999999999999887643 3 778899999
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCcc
Q 005837 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637 (675)
Q Consensus 570 ~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g 637 (675)
..+|..+++.|+.|.++ +||++.++..|+|+|+++++|......|...|+||+||.-|...+++
T Consensus 318 ~~eR~~il~~fr~g~~~----~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~ 381 (442)
T COG1061 318 KEEREAILERFRTGGIK----VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKE 381 (442)
T ss_pred HHHHHHHHHHHHcCCCC----EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCC
Confidence 99999999999999888 99999999999999999999999999999999999999999333333
No 91
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=8.7e-27 Score=231.03 Aligned_cols=199 Identities=34% Similarity=0.594 Sum_probs=176.1
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 005837 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (675)
Q Consensus 270 f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vL 349 (675)
|+++++++.+.+.+.++|+..|+++|.++++.+++++|+++++|||+|||++|++|+++++.... ...+++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 67889999999999999999999999999999999999999999999999999999999887742 12467999
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCc
Q 005837 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (675)
Q Consensus 350 Vl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEa 429 (675)
|++|+++|+.|+...++.+... .++.+..+.|+.........+..+++|+|+||+.|...+.+....+.+++++|+||+
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 9999999999999999998764 467888899988877776666668999999999999988887778899999999999
Q ss_pred ccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCC
Q 005837 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (675)
Q Consensus 430 H~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~ 477 (675)
|.+. +.++...+..++..+....|++++|||++..+...+...+.++
T Consensus 153 h~~~-~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~ 199 (203)
T cd00268 153 DRML-DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNP 199 (203)
T ss_pred HHhh-ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCC
Confidence 9998 6788999999999998899999999999988877776666544
No 92
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-27 Score=259.57 Aligned_cols=320 Identities=18% Similarity=0.207 Sum_probs=234.2
Q ss_pred HHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH-HHhhcCCCC
Q 005837 296 AMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC-RSLSKCGVP 374 (675)
Q Consensus 296 ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l-~~l~~~~~~ 374 (675)
++++.+|..+.-+||||.||||||. ++| |.+.+..+..... ..++.+-|..|+|..|..++++. .+++.++..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e 335 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE 335 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhccCccc
Confidence 6777888888889999999999999 456 6677766554322 22669999999997777776655 456665666
Q ss_pred ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCcc-HHHHHHHH---HhhC-
Q 005837 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-FEVALQSL---ISSS- 449 (675)
Q Consensus 375 ~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~-~~~~l~~i---l~~~- 449 (675)
+.+.+.+.++.... ..|.++|.|.|++.+.+ .+-+.+++.|||||||.-.-..+ ....+.++ -...
T Consensus 336 VsYqIRfd~ti~e~--------T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 336 VSYQIRFDGTIGED--------TSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred eeEEEEeccccCCC--------ceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 77888887765543 48999999999998887 55699999999999996541111 11112222 1111
Q ss_pred -----CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHH
Q 005837 450 -----PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (675)
Q Consensus 450 -----~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 524 (675)
-.+.++|+||||+....+....++|+.++.++.-....++ ..-|+.... ......+.+...+.++
T Consensus 407 ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP-VsIHF~krT---------~~DYi~eAfrKtc~IH 476 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP-VSIHFNKRT---------PDDYIAEAFRKTCKIH 476 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc-eEEEeccCC---------CchHHHHHHHHHHHHh
Confidence 1367899999999988877777777754444333222222 112222222 2233446777888899
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCC----------------------------------------------
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR---------------------------------------------- 558 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~---------------------------------------------- 558 (675)
++.+.+.+|||+..+.+++++...|++..+....
T Consensus 477 ~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~ 556 (1172)
T KOG0926|consen 477 KKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQEL 556 (1172)
T ss_pred hcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhh
Confidence 9999999999999999999999999886431100
Q ss_pred ------------------------------------------------eeEEEecCCCCHHHHHHHHHHHhcCCCCCCce
Q 005837 559 ------------------------------------------------VRVLPFHAALDQETRLANMKEFTTSRSKEARL 590 (675)
Q Consensus 559 ------------------------------------------------~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~ 590 (675)
+-|+++++-++.+++.++++.-..|..-
T Consensus 557 ~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RL---- 632 (1172)
T KOG0926|consen 557 VDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERL---- 632 (1172)
T ss_pred hcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceE----
Confidence 3488999999999999999999998776
Q ss_pred EEEEcccccccCCCCCcCEEEEcCC--------CC----------CHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 591 FLVCTDRASRGIDFAGVDHVVLFDF--------PR----------DPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 591 VLVaT~~~~~GiDip~v~~VI~~d~--------p~----------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
++|||+++++.+.||++++||+.+. -. |-.+--||+||||| .++|+||.+|+..
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGR--tgpGHcYRLYSSA 704 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGR--TGPGHCYRLYSSA 704 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCC--CCCCceeehhhhH
Confidence 9999999999999999999998443 33 33444699999999 5899999999853
No 93
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.1e-26 Score=263.27 Aligned_cols=317 Identities=15% Similarity=0.175 Sum_probs=232.4
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~ 372 (675)
....+.+.++.+++.+||+|+||||||+..-..+++... ..++++.++.|+|-.|..+++++.+.....
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 445666777777889999999999999964433332221 345689999999988888988887765543
Q ss_pred CCceE--EEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHH-HHHHHHHhhC
Q 005837 373 VPFRS--MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE-VALQSLISSS 449 (675)
Q Consensus 373 ~~~~v--~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~-~~l~~il~~~ 449 (675)
.+-.+ .+.+.+.... ...|-|+|.+.|++.+.+.. .+..+++|||||||.-.-+.++. ..++.++...
T Consensus 122 ~G~~VGY~iRfe~~~s~--------~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 122 LGETVGYSIRFESKVSP--------RTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred cCceeeEEEEeeccCCC--------CceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 33333 3333333322 45799999999999988744 59999999999999765334443 3456667777
Q ss_pred CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCC
Q 005837 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV 529 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 529 (675)
+...++|+||||+..+ .+..+|.+.+++...+.. +.++..+...... .+.....+......+.....
T Consensus 193 r~DLKiIimSATld~~---rfs~~f~~apvi~i~GR~---fPVei~Y~~~~~~-------d~~l~~ai~~~v~~~~~~~~ 259 (845)
T COG1643 193 RDDLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRT---YPVEIRYLPEAEA-------DYILLDAIVAAVDIHLREGS 259 (845)
T ss_pred CCCceEEEEecccCHH---HHHHHcCCCCEEEecCCc---cceEEEecCCCCc-------chhHHHHHHHHHHHhccCCC
Confidence 7789999999999877 456777776666655422 2233332221111 11123344455555555667
Q ss_pred CceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCE
Q 005837 530 SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609 (675)
Q Consensus 530 ~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~ 609 (675)
+.+|||.+...+++.+++.|++.. ....+.++++||.|+.+++.++++.-..|..+ |++||++++++|.||+|++
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~-l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RK----VVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAE-LGDDLEILPLYGALSAEEQVRVFEPAPGGKRK----VVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcc-ccCCcEEeeccccCCHHHHHhhcCCCCCCcce----EEEEccccccceeeCCeEE
Confidence 899999999999999999999711 11347899999999999999999998888777 9999999999999999999
Q ss_pred EEEcCCC------------------CCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 610 VVLFDFP------------------RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 610 VI~~d~p------------------~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
||+-+.. -|-.+..||.||||| ..+|.||.+|+.++..
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR--~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR--TGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhcccccc--CCCceEEEecCHHHHH
Confidence 9995543 377889999999999 5899999999975533
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=6e-26 Score=252.74 Aligned_cols=299 Identities=19% Similarity=0.241 Sum_probs=197.5
Q ss_pred EEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHH
Q 005837 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (675)
Q Consensus 309 ii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~ 388 (675)
++.|+||||||++|+..+...+.. +.++||++|+++|+.|+++.+++... ..+..++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~------------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL------------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHH
Confidence 468999999999997665544432 45899999999999999999987532 35677787766544
Q ss_pred H---HHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC--CccHH---HHHHHHHhhCCCCccEEEEe
Q 005837 389 Q---LENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFE---VALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 389 ~---~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~--~~~~~---~~l~~il~~~~~~~qiI~lS 459 (675)
. |..+. ...+|+|+|+..+. ..+.++++|||||+|.... ..... ..+..+ .....+.++|++|
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~S 136 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGS 136 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEe
Confidence 3 33333 45899999998763 3577899999999998753 11111 112222 2333578999999
Q ss_pred cCCCHHHHHHHHHhCCCCeEEeCCC-ccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecc
Q 005837 460 ATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538 (675)
Q Consensus 460 AT~~~~v~~~l~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s 538 (675)
||++.+.+..+.. .....+.... .... ......+++....... ..........+.+.++ .++++|||+|+
T Consensus 137 ATPsles~~~~~~--g~~~~~~l~~r~~~~-~~p~v~vid~~~~~~~----~~ls~~l~~~i~~~l~--~g~qvLvflnr 207 (505)
T TIGR00595 137 ATPSLESYHNAKQ--KAYRLLVLTRRVSGR-KPPEVKLIDMRKEPRQ----SFLSPELITAIEQTLA--AGEQSILFLNR 207 (505)
T ss_pred CCCCHHHHHHHhc--CCeEEeechhhhcCC-CCCeEEEEeccccccc----CCccHHHHHHHHHHHH--cCCcEEEEEeC
Confidence 9998776655432 1111111111 1110 1111122222111100 0000112223333333 34689999877
Q ss_pred hhh------------------------------------------------------------HHHHHHHHHHhcccCCC
Q 005837 539 IVT------------------------------------------------------------CRKVENILKRFDRKETR 558 (675)
Q Consensus 539 ~~~------------------------------------------------------------~~~l~~~L~~~~~~~~~ 558 (675)
+.. .+++.+.|++..+.
T Consensus 208 rGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~--- 284 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPG--- 284 (505)
T ss_pred CcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCC---
Confidence 643 47778888876532
Q ss_pred eeEEEecCCCCHHHH--HHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE--cCC----CC------CHHHHHH
Q 005837 559 VRVLPFHAALDQETR--LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL--FDF----PR------DPSEYVR 624 (675)
Q Consensus 559 ~~v~~lhg~m~~~eR--~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~--~d~----p~------s~~~y~Q 624 (675)
..+..+|++++..++ ..+++.|++|+.+ |||+|+++++|+|+|+|++|+. +|. |. ..+.|+|
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~----ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q 360 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKAD----ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQ 360 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCC----EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHH
Confidence 689999999987666 8999999999988 9999999999999999999864 443 21 2567899
Q ss_pred HhcccccCCCCccEEEEEEeCccH
Q 005837 625 RVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 625 r~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
++||+|| .+..|.+++.....+.
T Consensus 361 ~~GRagR-~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 361 VAGRAGR-AEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHhccCC-CCCCCEEEEEeCCCCC
Confidence 9999999 7889999977654443
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.9e-26 Score=261.64 Aligned_cols=334 Identities=19% Similarity=0.259 Sum_probs=238.3
Q ss_pred HHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 284 ~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
..++| .+.++|++++-.+..+.+++++||||+|||++...++...+.. +.+++|++|.++|.+|.++
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------------~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------------GQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------------CCceEeccchhhhhhhHHH
Confidence 33444 5789999999999999999999999999999998888777755 4479999999999999999
Q ss_pred HHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHH
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~ 443 (675)
.+......- .-.+.+++|+.... .++.++|+|.|.|.+++.+....+..+..||+||+|.|. +........
T Consensus 181 dl~~~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-D~eRG~VWE 251 (1041)
T COG4581 181 DLLAKFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-DRERGVVWE 251 (1041)
T ss_pred HHHHHhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-ccccchhHH
Confidence 887754310 11257778876643 458899999999999998887889999999999999998 666777788
Q ss_pred HHHhhCCCCccEEEEecCCCHHH--HHHHHHhCCCCeEEeCCCccccCCCceEEEEec-----CCCCCC---CCc--hhh
Q 005837 444 SLISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC-----SGDQES---DKT--PET 511 (675)
Q Consensus 444 ~il~~~~~~~qiI~lSAT~~~~v--~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-----~~~~~~---~~~--~~~ 511 (675)
.++-.++...++++||||++... ..++...- .....+....++..+...+++... -..... ... ...
T Consensus 252 E~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 252 EVIILLPDHVRFVFLSATVPNAEEFAEWIQRVH-SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhcc-CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 88888999999999999997653 23333222 222222333333333222222110 000000 000 000
Q ss_pred -------------------------------hhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcc------
Q 005837 512 -------------------------------AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR------ 554 (675)
Q Consensus 512 -------------------------------~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~------ 554 (675)
........+...+.....-++|+|+.++..|+..+..+..+..
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0001113345555555667999999999999988887752110
Q ss_pred -----------------cCCCe-------------eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC
Q 005837 555 -----------------KETRV-------------RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604 (675)
Q Consensus 555 -----------------~~~~~-------------~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi 604 (675)
...++ .++.+|++|-+..+..+.+.|..|..+ |++||.+++.|+|.
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvk----vvFaTeT~s~GiNm 486 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVK----VVFATETFAIGINM 486 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcccee----EEeehhhhhhhcCC
Confidence 00111 266899999999999999999999999 99999999999999
Q ss_pred CCcCEEEEcCCCC---------CHHHHHHHhccccc-CCCCccEEEEEEeC
Q 005837 605 AGVDHVVLFDFPR---------DPSEYVRRVGRTAR-GAGGTGKAFIFVVG 645 (675)
Q Consensus 605 p~v~~VI~~d~p~---------s~~~y~Qr~GRagR-~~g~~g~~i~~~~~ 645 (675)
| ++.|++..+.+ +..+|.|+.||||| +-...|++++.-.+
T Consensus 487 P-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 487 P-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred c-ccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 9 55666655433 78999999999999 33467888877443
No 96
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.8e-26 Score=245.29 Aligned_cols=321 Identities=19% Similarity=0.221 Sum_probs=235.1
Q ss_pred CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
.....+++-.+.+.++..++-+||.|.||||||. ++| |.+.+..+. ..+.++-+..|+|..|..++.++.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGyt------k~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYT------KGGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccc------cCCceEeecCcchHHHHHHHHHHH
Confidence 3445677888999999999999999999999999 466 667665432 334469999999999988887776
Q ss_pred HhhcCCC--CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCcc-HHHHHH
Q 005837 367 SLSKCGV--PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-FEVALQ 443 (675)
Q Consensus 367 ~l~~~~~--~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~-~~~~l~ 443 (675)
+-..... .+.+.+.+.+..... .-|-++|.++|++.+-. ...+.++++|||||||.-.-..+ .-..++
T Consensus 332 ~EMgvkLG~eVGYsIRFEdcTSek--------TvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvK 402 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYSIRFEDCTSEK--------TVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVK 402 (902)
T ss_pred HHhCcccccccceEEEeccccCcc--------eeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHH
Confidence 6433222 233445555444332 35889999999876654 34688999999999996531122 223344
Q ss_pred HHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHH
Q 005837 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523 (675)
Q Consensus 444 ~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l 523 (675)
.|.+ ..+..++++.|||+..+ .+..+|.+.+++..++... .+..++-..+. ..........++++
T Consensus 403 DIar-~RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PE--------AdYldAai~tVlqI 467 (902)
T KOG0923|consen 403 DIAR-FRPDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPE--------ADYLDAAIVTVLQI 467 (902)
T ss_pred HHHh-hCCcceEEeeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCc--------hhHHHHHHhhheee
Confidence 4444 45789999999999876 4567788877777665321 22222221111 11122344455555
Q ss_pred HHhCCCCceEEEecchhhHHHHHHHHHH----hcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccccc
Q 005837 524 IEKSPVSKTIVFCNKIVTCRKVENILKR----FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRAS 599 (675)
Q Consensus 524 l~~~~~~k~IVF~~s~~~~~~l~~~L~~----~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~ 599 (675)
+...+.+-+|||...+++++.+...|.+ ++.....+-++++|+.|+.+.+..|++.-..|..+ |++||++++
T Consensus 468 H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK----VVLATNIAE 543 (902)
T KOG0923|consen 468 HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK----VVLATNIAE 543 (902)
T ss_pred EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee----EEEeecchh
Confidence 5566778999999999999888777755 55556668899999999999999999999999888 999999999
Q ss_pred ccCCCCCcCEEEEcCCCC------------------CHHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 600 RGIDFAGVDHVVLFDFPR------------------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 600 ~GiDip~v~~VI~~d~p~------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
+.|.|++|.+||+-++.+ |-.+-.||+||||| .++|+||.+|+...
T Consensus 544 TSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGR--tgPGKCfRLYt~~a 607 (902)
T KOG0923|consen 544 TSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGR--TGPGKCFRLYTAWA 607 (902)
T ss_pred hceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCC--CCCCceEEeechhh
Confidence 999999999999966533 67778999999999 58999999998543
No 97
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=1.1e-25 Score=244.40 Aligned_cols=354 Identities=18% Similarity=0.275 Sum_probs=240.5
Q ss_pred CChHHHHHHhhhhhc----CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~----g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++||.+.++++.+ |-|+|+...+|-|||+.- +..+.++.... ...||. ||+||...|.+ |.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-------~~~GPf-LVi~P~StL~N----W~ 233 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-------GIPGPF-LVIAPKSTLDN----WM 233 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------CCCCCe-EEEeeHhhHHH----HH
Confidence 688999999999764 788999999999999963 23333443321 123555 99999887765 66
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHH---hhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~---l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
.++..+.+.+++.+++|+...+..... .....+|+|+|+++.++- ...+.--.|+++||||||++.+... .+
T Consensus 234 ~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s---~L 308 (971)
T KOG0385|consen 234 NEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKS---KL 308 (971)
T ss_pred HHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhh---HH
Confidence 666666788999999999866554321 234799999999988644 2234445699999999999984332 23
Q ss_pred HHHHhhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeC---------------C---------------------C
Q 005837 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMG---------------P---------------------G 484 (675)
Q Consensus 443 ~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~---------------~---------------------~ 484 (675)
..+++.+.. .--+++|+|+-.+....++.++. -+.++.. . .
T Consensus 309 ~~~lr~f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~d 387 (971)
T KOG0385|consen 309 SKILREFKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSD 387 (971)
T ss_pred HHHHHHhcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHh
Confidence 344444432 23378999985544444443220 0000000 0 0
Q ss_pred ccccCCCceEEEEecC-----------------------------------------------------CCCCCCCchhh
Q 005837 485 MHRISPGLEEFLVDCS-----------------------------------------------------GDQESDKTPET 511 (675)
Q Consensus 485 ~~~~~~~i~~~~~~~~-----------------------------------------------------~~~~~~~~~~~ 511 (675)
+....+......+.+. +..........
T Consensus 388 Ve~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv 467 (971)
T KOG0385|consen 388 VEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 467 (971)
T ss_pred HhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH
Confidence 0000000011111000 00001111223
Q ss_pred hhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 005837 512 AFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589 (675)
Q Consensus 512 ~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~ 589 (675)
....|+..|.+++.. ..++++|||.. ...+-++|..+. ...++.++.+.|.++.++|...++.|...... ++
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQ----mt~mLDILeDyc-~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~-~F 541 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQ----MTRMLDILEDYC-MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSE-KF 541 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHH----HHHHHHHHHHHH-HhcCceeEeecCCCCcHHHHHHHHhcCCCCcc-eE
Confidence 344466666666654 34689999994 445555555544 33448999999999999999999999988876 78
Q ss_pred eEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCCh
Q 005837 590 LFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669 (675)
Q Consensus 590 ~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~ 669 (675)
.+|++|.+.+.|||+..+++||.||..++++.-+|.+.||+| .|+...+.+|-.-.+....++|++++.....++.+-.
T Consensus 542 iFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHR-IGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VI 620 (971)
T KOG0385|consen 542 IFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHR-IGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVI 620 (971)
T ss_pred EEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHh-hCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhh
Confidence 899999999999999999999999999999999999999999 7888888888777788888899998888777766543
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=7e-24 Score=212.34 Aligned_cols=325 Identities=21% Similarity=0.254 Sum_probs=223.1
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
++++.|+.+-+.++ +.++.+++|-||+|||....-.+-+.+ + .|.++.+.+|+...|-+++.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-N-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-h-----------cCCeEEEecCcccchHHHHHHH
Confidence 67889988877765 458999999999999996444333333 2 3679999999999999999998
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
+.-.. +..+.+++|++...-. ..++|+|..+|+++... ++++||||+|...-..+ ......+
T Consensus 165 k~aF~---~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d-~~L~~Av 226 (441)
T COG4098 165 KQAFS---NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDD-QSLQYAV 226 (441)
T ss_pred HHhhc---cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh-------ccEEEEeccccccccCC-HHHHHHH
Confidence 87543 3568889998775543 57999999998776653 67999999998763111 1122223
Q ss_pred HhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCC-ccccCCCceEEEEecCCCCCCCCchhhhhhhHH-HHHHHH
Q 005837 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESDKTPETAFLNKK-SALLQL 523 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~l 523 (675)
.+.......+|.+|||++......+.. .+...+..+. +|.. +.....++...... .....+|. ..+...
T Consensus 227 ~~ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~-pLpvPkf~w~~~~~------k~l~r~kl~~kl~~~ 297 (441)
T COG4098 227 KKARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGK-PLPVPKFVWIGNWN------KKLQRNKLPLKLKRW 297 (441)
T ss_pred HHhhcccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCC-CCCCCceEEeccHH------HHhhhccCCHHHHHH
Confidence 334445667899999999887665543 2222333333 3332 22222222222211 00111122 256666
Q ss_pred HHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccccccc
Q 005837 524 IEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRG 601 (675)
Q Consensus 524 l~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~G 601 (675)
+++. .+.+++||+++++..++++..|++..+. ..++..|+. ...|.+..+.|++|++. +||+|.+++||
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~---~~i~~Vhs~--d~~R~EkV~~fR~G~~~----lLiTTTILERG 368 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK---ETIASVHSE--DQHRKEKVEAFRDGKIT----LLITTTILERG 368 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc---cceeeeecc--CccHHHHHHHHHcCceE----EEEEeehhhcc
Confidence 6553 3578999999999999999999765432 466778887 67899999999999998 99999999999
Q ss_pred CCCCCcCEEEEcCC--CCCHHHHHHHhccccc-CCCCccEEEEEEeCccHHH---HHHHHHHhcCCC
Q 005837 602 IDFAGVDHVVLFDF--PRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGKQVSL---AQRIMERNRKGH 662 (675)
Q Consensus 602 iDip~v~~VI~~d~--p~s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~d~~~---~~~l~~~~~~~~ 662 (675)
+.+|+|++.+.-.- -.+-+.++|.+||+|| ..-..|.++.|-.....+. .+.|.++++.++
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~MN~lg~ 435 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKEMNKLGF 435 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHHHHHHhh
Confidence 99999998775332 2578999999999999 3335777776655444443 344555555444
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.9e-24 Score=256.20 Aligned_cols=330 Identities=19% Similarity=0.191 Sum_probs=202.5
Q ss_pred CCChHHHHHHhhhhhc-----CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE-----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~-----g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
..++++|.+|+..+.. .+.++++++||||||.+++..+ ..+... ....++|||+|+.+|+.|+.+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~---------~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA---------KRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc---------CccCeEEEEecHHHHHHHHHH
Confidence 3589999999988763 3689999999999999865433 334332 224589999999999999999
Q ss_pred HHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-----cccccccceEEEEcCcccccC----
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-----GILQLINLRCAILDEVDILFN---- 434 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-----~~~~l~~i~~IVIDEaH~l~~---- 434 (675)
.+..+.... ......+++....... .......|+|+|...|...+.. ....+..+++|||||||+...
T Consensus 482 ~F~~~~~~~-~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 482 AFKDTKIEG-DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHhccccc-ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 998864211 1111111111100111 1123578999999998765432 124567899999999998631
Q ss_pred ----Cc------cHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeC------CCccc---cCCCceEE
Q 005837 435 ----DE------DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG------PGMHR---ISPGLEEF 495 (675)
Q Consensus 435 ----~~------~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~------~~~~~---~~~~i~~~ 495 (675)
+. ++...++.++... +...|+||||+...... +|..+..... .+.-. .+..+...
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETR 632 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEE
Confidence 11 1235577777754 34679999999654332 2322111000 00000 00000000
Q ss_pred E----EecCCC------------CCCCCch-----hhhhhh-------HH----HHHHHHHHhCCCCceEEEecchhhHH
Q 005837 496 L----VDCSGD------------QESDKTP-----ETAFLN-------KK----SALLQLIEKSPVSKTIVFCNKIVTCR 543 (675)
Q Consensus 496 ~----~~~~~~------------~~~~~~~-----~~~~~~-------k~----~~l~~ll~~~~~~k~IVF~~s~~~~~ 543 (675)
+ +..... ....... .....+ .. ..+.+.+.....+++||||.++.+|+
T Consensus 633 ~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~ 712 (1123)
T PRK11448 633 LSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHAD 712 (1123)
T ss_pred eccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHH
Confidence 0 000000 0000000 000000 01 11222233333579999999999999
Q ss_pred HHHHHHHHhccc----CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCH
Q 005837 544 KVENILKRFDRK----ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619 (675)
Q Consensus 544 ~l~~~L~~~~~~----~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~ 619 (675)
.+.+.|.+.... .....+..+||+++ ++..+++.|+++.. +.|+|+++++.+|+|+|.|.+||++..++|.
T Consensus 713 ~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~---p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~ 787 (1123)
T PRK11448 713 MVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERL---PNIVVTVDLLTTGIDVPSICNLVFLRRVRSR 787 (1123)
T ss_pred HHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCC---CeEEEEecccccCCCcccccEEEEecCCCCH
Confidence 999998775311 11124566898875 56789999998764 2499999999999999999999999999999
Q ss_pred HHHHHHhcccccCCC--CccEEEEE
Q 005837 620 SEYVRRVGRTARGAG--GTGKAFIF 642 (675)
Q Consensus 620 ~~y~Qr~GRagR~~g--~~g~~i~~ 642 (675)
..|.||+||+.|... .+..+++|
T Consensus 788 ~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 788 ILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred HHHHHHHhhhccCCccCCCceEEEE
Confidence 999999999999433 35555555
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=6.4e-24 Score=241.80 Aligned_cols=330 Identities=18% Similarity=0.195 Sum_probs=219.9
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++|...--.+..| -|..|+||+|||++|.+|++..+.. +..++|++|+++||.|.++++..+.
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 5667776665555555 5899999999999999999976643 3368999999999999999999998
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc-cccc-----ccceEEEEcCcccccCCc------
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRCAILDEVDILFNDE------ 436 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~-~~~l-----~~i~~IVIDEaH~l~~~~------ 436 (675)
.+ .++.+.+++|+.........+ .++|+|+||+.| +++++.. .+.+ ..+.++||||||.++=|.
T Consensus 148 ~~-lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 148 EF-LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred cc-cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 86 679999999998766654443 589999999999 8888765 2333 579999999999763110
Q ss_pred ---------cHHHHHHHHHhhCC--------------CCccEEEEecCC--------------C--HH--------HHHH
Q 005837 437 ---------DFEVALQSLISSSP--------------VTAQYLFVTATL--------------P--VE--------IYNK 469 (675)
Q Consensus 437 ---------~~~~~l~~il~~~~--------------~~~qiI~lSAT~--------------~--~~--------v~~~ 469 (675)
.....+..+...+. ...+.+.+|-.- + .. ....
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 11111111111111 112233333220 0 00 0000
Q ss_pred HHH------hC-CCC-------eEEeCCCc--------------c-----------------------------------
Q 005837 470 LVE------VF-PDC-------KVVMGPGM--------------H----------------------------------- 486 (675)
Q Consensus 470 l~~------~~-~~~-------~~i~~~~~--------------~----------------------------------- 486 (675)
+.. +| .+. .+++...+ |
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 100 01 010 11110000 0
Q ss_pred ------------ccCCCceEEEEecCCCCCCC---CchhhhhhhHHHHHHHHHH--hCCCCceEEEecchhhHHHHHHHH
Q 005837 487 ------------RISPGLEEFLVDCSGDQESD---KTPETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENIL 549 (675)
Q Consensus 487 ------------~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~k~~~l~~ll~--~~~~~k~IVF~~s~~~~~~l~~~L 549 (675)
...+++....++........ .........|..++.+.+. ...+.++||||+|++.++.++..|
T Consensus 385 MTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 385 MTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 00112222222111100000 0011222346666665553 235789999999999999999999
Q ss_pred HHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC-----------------------
Q 005837 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG----------------------- 606 (675)
Q Consensus 550 ~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~----------------------- 606 (675)
.+.+ +.+..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 465 ~~~g-----i~h~vLnak~~q~Ea~iia~Ag~~G~------VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 465 KKEN-----IKHQVLNAKFHEKEAQIIAEAGRPGA------VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHcC-----CCeEeecCCCChHHHHHHHhCCCCCc------EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 9876 88899999999999999999999995 9999999999999851
Q ss_pred ---------------cCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 607 ---------------VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 607 ---------------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
==|||-...+.|..--.|-.||+|| .|.+|.+-.|++-+|.
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR-QGDPGss~f~lSleD~ 589 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR-QGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc-CCCCCceEEEEEcCcH
Confidence 1268878888899999999999999 7999999999998773
No 101
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=9.3e-24 Score=247.44 Aligned_cols=340 Identities=19% Similarity=0.236 Sum_probs=218.5
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++||.+++++++ .+.++|++..+|.|||+..+. ++.++.... ...+.+|||||. +++.+|.+.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~--------~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR--------GITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc--------CCCCCEEEEeCh-HHHHHHHHHH
Confidence 57799999999986 467899999999999997644 334443321 223467999996 4667788888
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHH---hhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~---l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
.++. ..+++..+.|.......... ....++|+|+|++.+..... .+.-..|.+|||||||++.+.. ..+
T Consensus 239 ~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~---Skl 310 (1033)
T PLN03142 239 RRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN---SLL 310 (1033)
T ss_pred HHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH---HHH
Confidence 7764 45677777776554433211 22468999999999865432 2334468999999999997422 222
Q ss_pred HHHHhhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeC----------C--------------------------C
Q 005837 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMG----------P--------------------------G 484 (675)
Q Consensus 443 ~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~----------~--------------------------~ 484 (675)
...+..+. ....+++|+|+-.+....++.++. .+..+-. . .
T Consensus 311 skalr~L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ksd 389 (1033)
T PLN03142 311 SKTMRLFS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSD 389 (1033)
T ss_pred HHHHHHhh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHH
Confidence 33333333 334588999984433333322210 0000000 0 0
Q ss_pred c-cccCCCceEEEEecCCCCCC---------------------------------------------------CCchhhh
Q 005837 485 M-HRISPGLEEFLVDCSGDQES---------------------------------------------------DKTPETA 512 (675)
Q Consensus 485 ~-~~~~~~i~~~~~~~~~~~~~---------------------------------------------------~~~~~~~ 512 (675)
. ...++ .....+.+.-.... .......
T Consensus 390 V~~~LPp-K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie 468 (1033)
T PLN03142 390 VEKGLPP-KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVE 468 (1033)
T ss_pred HhhhCCC-ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhh
Confidence 0 00111 11111111100000 0000011
Q ss_pred hhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCce
Q 005837 513 FLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL 590 (675)
Q Consensus 513 ~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~ 590 (675)
...|+..|..++... .+.++|||+......+.+.+.|...+ +.++.+||+++..+|..+++.|.+.... .+.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g-----~~y~rIdGsts~~eRq~~Id~Fn~~~s~-~~V 542 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG-----YQYCRIDGNTGGEDRDASIDAFNKPGSE-KFV 542 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC-----CcEEEECCCCCHHHHHHHHHHhccccCC-ceE
Confidence 123444555555432 46799999999888888888887654 7889999999999999999999875432 456
Q ss_pred EEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 591 FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 591 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
+|++|.+++.|||+..+++||+||+++++..+.|++||+.| .|+...|.+|..-....+.++|++
T Consensus 543 fLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHR-IGQkk~V~VyRLIt~gTIEEkIle 607 (1033)
T PLN03142 543 FLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHR-IGQKKEVQVFRFCTEYTIEEKVIE 607 (1033)
T ss_pred EEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhh-cCCCceEEEEEEEeCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999 677777766654444444444443
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1e-23 Score=240.09 Aligned_cols=315 Identities=19% Similarity=0.192 Sum_probs=222.3
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHH-HHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI-QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l-~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.|++.|.-..-.+..| -|..|.||+|||+++.+|++ +.+ . +..+-|++|+..||.|.++++..+
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~------------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-T------------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-c------------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 6778888777777666 49999999999999999996 444 2 224779999999999999999999
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcc------cccccceEEEEcCcccccCC------
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILFND------ 435 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~i~~IVIDEaH~l~~~------ 435 (675)
..+ .++++.++.|+.+.......+ .++|+|+||..| .++++... .....+.++||||||.|+=|
T Consensus 146 ~~~-LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpL 222 (830)
T PRK12904 146 YEF-LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPL 222 (830)
T ss_pred Hhh-cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCce
Confidence 875 789999999998877665554 489999999999 78887643 24677999999999976210
Q ss_pred ---------ccHHHHHHHHHhhCCC--------C----------------------------------------------
Q 005837 436 ---------EDFEVALQSLISSSPV--------T---------------------------------------------- 452 (675)
Q Consensus 436 ---------~~~~~~l~~il~~~~~--------~---------------------------------------------- 452 (675)
......+..+...+.. .
T Consensus 223 iiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~ 302 (830)
T PRK12904 223 IISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFK 302 (830)
T ss_pred eeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHh
Confidence 0111122222222211 0
Q ss_pred ---------------------------------------------------------------ccEEEEecCCCHHHHHH
Q 005837 453 ---------------------------------------------------------------AQYLFVTATLPVEIYNK 469 (675)
Q Consensus 453 ---------------------------------------------------------------~qiI~lSAT~~~~v~~~ 469 (675)
.++-+||+|...+. ..
T Consensus 303 ~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~-~E 381 (830)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA-EE 381 (830)
T ss_pred cCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH-HH
Confidence 12333333332221 12
Q ss_pred HHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHH
Q 005837 470 LVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVEN 547 (675)
Q Consensus 470 l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~ 547 (675)
+...+.-..+.+.. +......+.+. ........|..++.+.+.. ..+.++||||+|++.++.++.
T Consensus 382 ~~~iY~l~vv~IPt-------nkp~~r~d~~d------~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~ 448 (830)
T PRK12904 382 FREIYNLDVVVIPT-------NRPMIRIDHPD------LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSK 448 (830)
T ss_pred HHHHhCCCEEEcCC-------CCCeeeeeCCC------eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence 22222111111110 00000000000 0011222577777777754 567899999999999999999
Q ss_pred HHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc--------------------
Q 005837 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV-------------------- 607 (675)
Q Consensus 548 ~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v-------------------- 607 (675)
.|.+.+ +.+..+|+. +.+|...+..|..+... |+|||++++||+||+==
T Consensus 449 ~L~~~g-----i~~~vLnak--q~eREa~Iia~Ag~~g~----VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~ 517 (830)
T PRK12904 449 LLKKAG-----IPHNVLNAK--NHEREAEIIAQAGRPGA----VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIA 517 (830)
T ss_pred HHHHCC-----CceEeccCc--hHHHHHHHHHhcCCCce----EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHH
Confidence 999876 788899996 88999999999998887 99999999999999532
Q ss_pred ------------------CEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 608 ------------------DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 608 ------------------~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
=|||-...+.|..--.|-.||+|| .|.+|.+-.|++-+|.
T Consensus 518 ~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR-QGdpGss~f~lSleD~ 575 (830)
T PRK12904 518 KIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR-QGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc-CCCCCceeEEEEcCcH
Confidence 268888889999999999999999 7999999999998773
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=8.7e-25 Score=243.88 Aligned_cols=353 Identities=20% Similarity=0.252 Sum_probs=238.4
Q ss_pred HHHHHHCCCCCChHHHHHHh--hhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH
Q 005837 280 IESLKRQNFLRPSQIQAMAF--PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (675)
Q Consensus 280 ~~~l~~~g~~~~~~iQ~~~i--~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L 357 (675)
.-.....|+..++.||.+++ +.++.++|+|+.+||+.|||+++.+.++..+...+ ..++.+.|..+.
T Consensus 213 ~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-----------r~~llilp~vsi 281 (1008)
T KOG0950|consen 213 HLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-----------RNVLLILPYVSI 281 (1008)
T ss_pred HHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-----------hceeEecceeeh
Confidence 33445578999999999998 55788899999999999999999998888776542 268999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh--cccccccceEEEEcCcccccCC
Q 005837 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFND 435 (675)
Q Consensus 358 a~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~--~~~~l~~i~~IVIDEaH~l~~~ 435 (675)
+++-...+..+... .++.+...+|....... .+..++.|+|.|+-..+.+. +.-.+..+++||+||.|++. +
T Consensus 282 v~Ek~~~l~~~~~~-~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~-d 355 (1008)
T KOG0950|consen 282 VQEKISALSPFSID-LGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG-D 355 (1008)
T ss_pred hHHHHhhhhhhccc-cCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee-c
Confidence 99888888887764 66777777766554433 23468999999997655543 22346678999999999998 5
Q ss_pred ccHHHHHHHHHh-----hCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchh
Q 005837 436 EDFEVALQSLIS-----SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPE 510 (675)
Q Consensus 436 ~~~~~~l~~il~-----~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 510 (675)
.+....+..++. ......|+|+||||++..- .+..++....... .+ +. ..+..+. .+.... .... .
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t--~f-RP-v~L~E~i-k~G~~i-~~~~-r 426 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTT--RF-RP-VPLKEYI-KPGSLI-YESS-R 426 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheec--cc-Cc-ccchhcc-CCCccc-ccch-h
Confidence 555555444432 2233468999999997531 2223322111110 00 00 0111111 000000 0000 0
Q ss_pred hhhhhHH-------------HHHHHHHHh-C-CCCceEEEecchhhHHHHHHHHHHhccc--------------------
Q 005837 511 TAFLNKK-------------SALLQLIEK-S-PVSKTIVFCNKIVTCRKVENILKRFDRK-------------------- 555 (675)
Q Consensus 511 ~~~~~k~-------------~~l~~ll~~-~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~-------------------- 555 (675)
....... +.+..++.+ . .+.++||||++++.|+.++..+....+.
T Consensus 427 ~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 427 NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 0000000 111222211 1 1346999999999999998666442211
Q ss_pred -------------CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCC----CCC
Q 005837 556 -------------ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF----PRD 618 (675)
Q Consensus 556 -------------~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~----p~s 618 (675)
.....++++|++++.++|..+...|++|.+. |++||+.++.|+++|..+++|-.-+ ..+
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~----vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~ 582 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIF----VLVATSTLAAGVNLPARRVIIRAPYVGREFLT 582 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeE----EEEecchhhccCcCCcceeEEeCCccccchhh
Confidence 0115689999999999999999999999988 9999999999999999988876432 237
Q ss_pred HHHHHHHhccccc-CCCCccEEEEEEeCccHHHHHHHHHHhcCCC
Q 005837 619 PSEYVRRVGRTAR-GAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662 (675)
Q Consensus 619 ~~~y~Qr~GRagR-~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~ 662 (675)
..+|.||+||||| +.+..|.+++.+...+......++....+..
T Consensus 583 ~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~ 627 (1008)
T KOG0950|consen 583 RLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPL 627 (1008)
T ss_pred hhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccccc
Confidence 7899999999999 3568999999999999877777766554443
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.1e-23 Score=238.83 Aligned_cols=328 Identities=17% Similarity=0.198 Sum_probs=217.5
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|++.|.-+.-.+..|+ |..|.||+|||+++.+|++..... |..+-|++|+.-||.|-+.++..+.
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 67888988777777775 999999999999999998877654 4578999999999999999999988
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCcccccCC-------
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILFND------- 435 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l~~~------- 435 (675)
.+ .++.+.++.++.+....... ..+||+++|..-|- ++++.. ......+.+.||||+|.++=|
T Consensus 146 ~~-LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 146 RW-LGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred Hh-cCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 75 68899999887666554333 35799999998774 444432 123456889999999965210
Q ss_pred --------ccHHHHHHHHHhhCCC-------------------CccEEEEecC-------------C-CH---HHHHHHH
Q 005837 436 --------EDFEVALQSLISSSPV-------------------TAQYLFVTAT-------------L-PV---EIYNKLV 471 (675)
Q Consensus 436 --------~~~~~~l~~il~~~~~-------------------~~qiI~lSAT-------------~-~~---~v~~~l~ 471 (675)
..+...+..+...+.. ..+.+.+|.. + .. .....+.
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 0111111111111100 0111222210 0 00 0000000
Q ss_pred H------hC-C-------CCeEEeCCCc----------------------------------------------------
Q 005837 472 E------VF-P-------DCKVVMGPGM---------------------------------------------------- 485 (675)
Q Consensus 472 ~------~~-~-------~~~~i~~~~~---------------------------------------------------- 485 (675)
. .+ . +..+++....
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 0 00 0 0000000000
Q ss_pred ---------cccCCCceEEEEecCCCCCCCC-----chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHH
Q 005837 486 ---------HRISPGLEEFLVDCSGDQESDK-----TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENIL 549 (675)
Q Consensus 486 ---------~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L 549 (675)
....+++....++ ...+... ........|...+.+.+.. ..+.++||||+|+..++.++..|
T Consensus 383 GTa~~e~~Ef~~iY~l~vv~IP--tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L 460 (796)
T PRK12906 383 GTAKTEEEEFREIYNMEVITIP--TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLL 460 (796)
T ss_pred CCCHHHHHHHHHHhCCCEEEcC--CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 0001111111111 1111000 0011123466777777643 36789999999999999999999
Q ss_pred HHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC---CCcC-----EEEEcCCCCCHHH
Q 005837 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF---AGVD-----HVVLFDFPRDPSE 621 (675)
Q Consensus 550 ~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi---p~v~-----~VI~~d~p~s~~~ 621 (675)
.+.+ +.+..+|+.+.+.++..+...++.|. |+|||++++||+|| ++|. |||+++.|.|...
T Consensus 461 ~~~g-----i~~~~Lna~~~~~Ea~ii~~ag~~g~------VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 461 DEAG-----IPHAVLNAKNHAKEAEIIMNAGQRGA------VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHCC-----CCeeEecCCcHHHHHHHHHhcCCCce------EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 9876 78889999999888888888888776 99999999999999 4899 9999999999999
Q ss_pred HHHHhcccccCCCCccEEEEEEeCccH
Q 005837 622 YVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 622 y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
|.|+.||+|| .|.+|.+..|++.+|.
T Consensus 530 ~~Ql~GRtGR-qG~~G~s~~~~sleD~ 555 (796)
T PRK12906 530 DNQLRGRSGR-QGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHHhhhhcc-CCCCcceEEEEeccch
Confidence 9999999999 7999999999998763
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2.4e-23 Score=236.55 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=126.9
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---hHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCC
Q 005837 271 KELGCSDYMIESLK-----RQNFLRP---SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (675)
Q Consensus 271 ~~~~l~~~l~~~l~-----~~g~~~~---~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~ 342 (675)
+.+++..++.+.+. ..||..| +|+|.++++.++.++++|+.|+||+|||++|.+|++..+...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 45678888887776 5788888 999999999999999999999999999999999999877542
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcccccc--
Q 005837 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQLI-- 419 (675)
Q Consensus 343 ~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~~~l~-- 419 (675)
..++||+|+++||.|..+++..+..+ .++++.+++||.....+...+ .++|+|+||++| +++++.+.+.+.
T Consensus 136 ---~~v~IVTpTrELA~Qdae~m~~L~k~-lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 136 ---KPVHLVTVNDYLAQRDCEWVGSVLRW-LGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred ---CCeEEEeCCHHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 14789999999999999999999875 678999999999988776554 589999999999 899988655554
Q ss_pred -----cceEEEEcCccccc
Q 005837 420 -----NLRCAILDEVDILF 433 (675)
Q Consensus 420 -----~i~~IVIDEaH~l~ 433 (675)
.+.++||||||.|+
T Consensus 210 ~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HhhcccccEEEEechhhhh
Confidence 45899999999764
No 106
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.1e-24 Score=228.97 Aligned_cols=316 Identities=17% Similarity=0.199 Sum_probs=224.5
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.....++.+.+..|-.++-+||++.||||||.. +| +++.+..+ ...+.+.+..|.|..|..+++++.+.
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY-------~~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGY-------ADNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhccc-------ccCCeeeecCchHHHHHHHHHHHHHH
Confidence 344567788888888889999999999999994 33 55555443 34568999999999999999888775
Q ss_pred hcCCC--CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHH-HHHHHH
Q 005837 369 SKCGV--PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE-VALQSL 445 (675)
Q Consensus 369 ~~~~~--~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~-~~l~~i 445 (675)
..... .+.+.+.+.+.... ...|-++|.+.|++..-. .-.+.++++||+||||.-.-..+.. ..++.+
T Consensus 424 M~~~lG~~VGYsIRFEdvT~~--------~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~ 494 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTSE--------DTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKV 494 (1042)
T ss_pred hCCccccccceEEEeeecCCC--------ceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHH
Confidence 43222 23445555554443 347999999999865443 2357889999999999764322222 234444
Q ss_pred HhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHH
Q 005837 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~ 525 (675)
++.. .+.++|++|||+... .+..+|.+++.+..++.. +.++.++...+- +......+...+++..
T Consensus 495 larR-rdlKliVtSATm~a~---kf~nfFgn~p~f~IpGRT---yPV~~~~~k~p~--------eDYVeaavkq~v~Ihl 559 (1042)
T KOG0924|consen 495 LARR-RDLKLIVTSATMDAQ---KFSNFFGNCPQFTIPGRT---YPVEIMYTKTPV--------EDYVEAAVKQAVQIHL 559 (1042)
T ss_pred HHhh-ccceEEEeeccccHH---HHHHHhCCCceeeecCCc---cceEEEeccCch--------HHHHHHHHhhheEeec
Confidence 4443 488999999999766 456677777766655432 122222222111 1111122233333444
Q ss_pred hCCCCceEEEecchhhHHHHHHHHHHhc-----ccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccc
Q 005837 526 KSPVSKTIVFCNKIVTCRKVENILKRFD-----RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR 600 (675)
Q Consensus 526 ~~~~~k~IVF~~s~~~~~~l~~~L~~~~-----~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~ 600 (675)
..+.+.+|||...+++++..+..+.+.. ....++.|+.+++.|+...+.++++.-..|..+ +||||+++++
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK----~IvATNIAET 635 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRK----CIVATNIAET 635 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCcee----EEEeccchhh
Confidence 4556889999999998877766665422 122468999999999999999999999988888 9999999999
Q ss_pred cCCCCCcCEEEEcCC------------------CCCHHHHHHHhcccccCCCCccEEEEEEeC
Q 005837 601 GIDFAGVDHVVLFDF------------------PRDPSEYVRRVGRTARGAGGTGKAFIFVVG 645 (675)
Q Consensus 601 GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~ 645 (675)
.+.+|++.+||+.++ |-|..+--||.||||| ..+|.||.+|+.
T Consensus 636 SLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGR--t~pG~cYRlYTe 696 (1042)
T KOG0924|consen 636 SLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGR--TGPGTCYRLYTE 696 (1042)
T ss_pred ceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCC--CCCcceeeehhh
Confidence 999999999999554 3477788899999999 589999999875
No 107
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=6.1e-24 Score=242.03 Aligned_cols=333 Identities=16% Similarity=0.182 Sum_probs=232.5
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
..+..+.+++.++.+++.++|.|.||+|||......++....+. +....+++..|+|-.|..+++++..-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~---------~~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES---------GAACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc---------CCCCeEEecCCchHHHHHHHHHHHHHh
Confidence 34677899999999999999999999999997665566655443 245679999999988888888776644
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
....+-.++.-.+..+... ....+++||.+.|++.+.. .-.+..+.+||+||+|.-.-+.+|.-.+.+.+-..
T Consensus 244 ~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~ 316 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPR 316 (924)
T ss_pred ccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhh
Confidence 3222322333222222211 1357999999999999887 45688999999999998766677766655555555
Q ss_pred CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCC---------CceEEEEecCCCCCCCCc----------hh
Q 005837 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP---------GLEEFLVDCSGDQESDKT----------PE 510 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~----------~~ 510 (675)
.++.++|+||||+..+ .+..+|..+.++..++...... .+.....+.......... ..
T Consensus 317 ~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (924)
T KOG0920|consen 317 NPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEP 393 (924)
T ss_pred CCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccc
Confidence 5799999999999855 4556777776666554321000 000000000000000000 00
Q ss_pred hhhhhHHHHHHHHH-HhCCCCceEEEecchhhHHHHHHHHHHhcccC--CCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 511 TAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKE--TRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 511 ~~~~~k~~~l~~ll-~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~--~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
....+....+...+ .....+.+|||.++..++..+.+.|.....-. ..+.+.++|+.|+..++..++.....|..+
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK- 472 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK- 472 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch-
Confidence 01112222233323 23346889999999999999999997643222 237788999999999999999999999888
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCC--------C----------CHHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFP--------R----------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p--------~----------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
||++|++++.+|.|++|-+||+.+.. . |-.+-.||.|||||. .+|.||.+|+...
T Consensus 473 ---IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 473 ---IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRSR 545 (924)
T ss_pred ---hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechhh
Confidence 99999999999999999999985432 2 556678999999994 8999999998644
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=5.1e-23 Score=197.47 Aligned_cols=163 Identities=32% Similarity=0.552 Sum_probs=137.1
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
|++|.++++.+.+++++++.+|||+|||++|++++++.+.+. ...+++|++|+++|+.|+.+.+.++...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 589999999999999999999999999999999999888763 2348999999999999999999998775
Q ss_pred CCCceEEEEECCcchH-HHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCC
Q 005837 372 GVPFRSMVVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (675)
Q Consensus 372 ~~~~~v~~l~gg~~~~-~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~ 450 (675)
..+++..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+. ...+...+..++....
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~-~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 -TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS-DETFRAMLKSILRRLK 148 (169)
T ss_dssp -TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH-HTTHHHHHHHHHHHSH
T ss_pred -cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc-cccHHHHHHHHHHHhc
Confidence 567888899988755 3334455679999999999999998754467779999999999998 4477888888877763
Q ss_pred --CCccEEEEecCCCHHH
Q 005837 451 --VTAQYLFVTATLPVEI 466 (675)
Q Consensus 451 --~~~qiI~lSAT~~~~v 466 (675)
.+.|++++|||++..+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 3689999999999444
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.6e-21 Score=219.91 Aligned_cols=330 Identities=18% Similarity=0.201 Sum_probs=215.2
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++|...--.+..| -|..|+||.|||++|.+|++..... +..|.|++|+..||.+..+++..+.
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~------------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT------------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 5667776554444444 6899999999999999999866643 3359999999999999999999998
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc-ccc-----cccceEEEEcCcccccCCcc-----
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQ-----LINLRCAILDEVDILFNDED----- 437 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~-~~~-----l~~i~~IVIDEaH~l~~~~~----- 437 (675)
.+ .++++.++.++...... .....++|+|+||+.| +++++.. ... ...+.++||||||.++-|..
T Consensus 148 ~~-lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 148 EF-LGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred Hh-cCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 86 78999999888775432 2233689999999999 7888764 222 36788999999997642111
Q ss_pred ----------HHHH----HHHHHhhC---------------CCCccEEEEecC--------C----------------CH
Q 005837 438 ----------FEVA----LQSLISSS---------------PVTAQYLFVTAT--------L----------------PV 464 (675)
Q Consensus 438 ----------~~~~----l~~il~~~---------------~~~~qiI~lSAT--------~----------------~~ 464 (675)
+... +..+.... ....+.+.+|-. + ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 1111 11121100 001122222210 0 00
Q ss_pred HHHHHHHH------hC-CC-------CeEEeCCC--------------c-------------------------------
Q 005837 465 EIYNKLVE------VF-PD-------CKVVMGPG--------------M------------------------------- 485 (675)
Q Consensus 465 ~v~~~l~~------~~-~~-------~~~i~~~~--------------~------------------------------- 485 (675)
.....+.. +| .+ ..+++... +
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence 00000000 00 00 00100000 0
Q ss_pred ----------------cccCCCceEEEEecCCCCCCCC---chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHH
Q 005837 486 ----------------HRISPGLEEFLVDCSGDQESDK---TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRK 544 (675)
Q Consensus 486 ----------------~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~ 544 (675)
....+++....++......... ........|..++.+-+.. ..+.++||||+|++.++.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ 464 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSEL 464 (908)
T ss_pred hHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHH
Confidence 0001122222221111000000 0111123455555554432 347899999999999999
Q ss_pred HHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC------------------
Q 005837 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG------------------ 606 (675)
Q Consensus 545 l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~------------------ 606 (675)
++..|...+ +.+..+|+.+++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 465 ls~~L~~~g-----i~~~vLnak~~~~Ea~ii~~Ag~~G~------VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 465 LARLMVKEK-----IPHEVLNAKFHEREAEIVAQAGRTGA------VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred HHHHHHHCC-----CCeEeccCcccHHHHHHHHhCCCCCc------EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 999999876 78889999999999999999999987 9999999999999851
Q ss_pred -------------------cCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 607 -------------------VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 607 -------------------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
==|||-...+.|..--.|-.||||| .|.+|.+..|++-+|.
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGR-QGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGR-QGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhccccc-CCCCCceeEEEEeCcH
Confidence 1278888888999999999999999 7999999999998774
No 110
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.88 E-value=3.4e-22 Score=227.06 Aligned_cols=347 Identities=18% Similarity=0.251 Sum_probs=225.2
Q ss_pred CCChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
..++.||.+.+++++ .+.|+|++..+|-|||+.-+ ..|..+.... ...||. ||++|...+.. |
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~-------~~~gpf-lvvvplst~~~----W 435 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSL-------QIHGPF-LVVVPLSTITA----W 435 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhh-------hccCCe-EEEeehhhhHH----H
Confidence 679999999999976 47899999999999998532 2333333221 023554 88899654433 5
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhh----C-----CCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCC
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----E-----GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~----~-----~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~ 435 (675)
-+++..|. .++++++.|....+..++... . .++++++|++.++.-.. .+.--.|.+++|||||++.+.
T Consensus 436 ~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~ 512 (1373)
T KOG0384|consen 436 EREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND 512 (1373)
T ss_pred HHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch
Confidence 55555554 688999999988877665432 2 48999999998863332 233345889999999999843
Q ss_pred ccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC--CCCeEEeC-------------------------------
Q 005837 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMG------------------------------- 482 (675)
Q Consensus 436 ~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~--~~~~~i~~------------------------------- 482 (675)
... .+.. +..+..+.+ +++|+|+-.+....++.++ ..+..+..
T Consensus 513 ~~~--l~~~-l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 513 ESK--LYES-LNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred HHH--HHHH-HHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 322 2222 333332222 7789998665555554332 10000000
Q ss_pred -CCcc-ccCCCceEEE-Eec----------------------------------------CCCCCCCCchhhhh------
Q 005837 483 -PGMH-RISPGLEEFL-VDC----------------------------------------SGDQESDKTPETAF------ 513 (675)
Q Consensus 483 -~~~~-~~~~~i~~~~-~~~----------------------------------------~~~~~~~~~~~~~~------ 513 (675)
.... ..++..+.+. +.. ..........+-..
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 0000 1111111111 000 00000000000000
Q ss_pred -------------hhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHH
Q 005837 514 -------------LNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMK 578 (675)
Q Consensus 514 -------------~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~ 578 (675)
..|+..|.++|.+ ..+++||||...+...+.|+++|...+ +.+-.+.|.+..+.|...++
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~-----ypfQRLDGsvrgelRq~AID 743 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG-----YPFQRLDGSVRGELRQQAID 743 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC-----CcceeccCCcchHHHHHHHH
Confidence 0112222333332 236899999999888888999988765 78889999999999999999
Q ss_pred HHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 579 EFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 579 ~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
.|...... .+++|+||.+.+.|||+..++.||+||..|++++-+|...||+| .|++..+-+|-.-+...+.+.|++++
T Consensus 744 hFnap~Sd-dFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHR-IGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 744 HFNAPDSD-DFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHR-IGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred hccCCCCC-ceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHh-hcccceEEEEEEecCCchHHHHHHHH
Confidence 99998887 89999999999999999999999999999999999999999999 78877765554444445555566655
Q ss_pred cCCC
Q 005837 659 RKGH 662 (675)
Q Consensus 659 ~~~~ 662 (675)
....
T Consensus 822 k~Km 825 (1373)
T KOG0384|consen 822 KLKM 825 (1373)
T ss_pred HHHh
Confidence 5443
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=4.8e-21 Score=222.97 Aligned_cols=329 Identities=18% Similarity=0.239 Sum_probs=211.2
Q ss_pred CChHHHHHHhhhhhcC---C-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG---K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g---~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
..++.|..++..+... . .+++.||||+|||++.+.+++..+... ....++++++.|++.+++++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 3488999999998763 4 788999999999999999988776552 124679999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHH--------------hhCCCcEEEeCHHHHHHHHHh-cccc---cccceEEEEc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN--------------LQEGVDVLIATPGRFMFLIKE-GILQ---LINLRCAILD 427 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~--------------l~~~~~IlV~Tp~~L~~~l~~-~~~~---l~~i~~IVID 427 (675)
++........ ...+.+.....-.... ...-..+.++||..+...... ..+. .-..+++|+|
T Consensus 267 ~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 267 KEIFGLFSVI-GKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred Hhhhcccccc-cccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 9865431111 1101222211111000 011245666777666542221 1111 1236689999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|+|.+..+.........+.........+|+||||+|......+...+.....+..... ..+......+.......
T Consensus 346 E~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~--- 420 (733)
T COG1203 346 EVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVD--- 420 (733)
T ss_pred cHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchh---
Confidence 9999984323344444444444567899999999999999988887754333322211 00001111110000000
Q ss_pred chhhhhhhH--HHHHHHHHH-hCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC-
Q 005837 508 TPETAFLNK--KSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS- 583 (675)
Q Consensus 508 ~~~~~~~~k--~~~l~~ll~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g- 583 (675)
.... ......... ...+.+++|.|||+..|..++..|+... ..++.+|+.+...+|.+.+++..+-
T Consensus 421 -----~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~-----~~v~LlHSRf~~~dR~~ke~~l~~~~ 490 (733)
T COG1203 421 -----VEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG-----PKVLLLHSRFTLKDREEKERELKKLF 490 (733)
T ss_pred -----hhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC-----CCEEEEecccchhhHHHHHHHHHHHH
Confidence 0000 011111111 2346789999999999999999999865 2689999999999999998866532
Q ss_pred CCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCC--CccEEEEEEeCcc
Q 005837 584 RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAG--GTGKAFIFVVGKQ 647 (675)
Q Consensus 584 ~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g--~~g~~i~~~~~~d 647 (675)
+.+ ...|+|||++.+.|+|+ +.+.+|-==.| +.+.+||+||++| .| ..|..+++...+.
T Consensus 491 ~~~-~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R-~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 491 KQN-EGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNR-HGKKENGKIYVYNDEER 551 (733)
T ss_pred hcc-CCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhh-cccccCCceeEeecccC
Confidence 111 33499999999999998 47777644444 9999999999999 56 6788887766444
No 112
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.3e-20 Score=195.98 Aligned_cols=337 Identities=17% Similarity=0.163 Sum_probs=233.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
...|.....++...+.+++..-...+..+.+-+..+.+++-++++|.||||||...-..++...... ..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----------~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----------LT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----------cc
Confidence 3577888888888888876544455666777778888889999999999999996544444433321 24
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCC--ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~--~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
.+....|.|..|.+++.+..+......+ +...+-+.+-..... -+-++|.++|++...... .+.++++|
T Consensus 93 ~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T--------~Lky~tDgmLlrEams~p-~l~~y~vi 163 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT--------LLKYCTDGMLLREAMSDP-LLGRYGVI 163 (699)
T ss_pred ceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhH--------HHHHhcchHHHHHHhhCc-ccccccEE
Confidence 6788899999999988887765432222 112222222121221 134588888876655533 48899999
Q ss_pred EEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCC
Q 005837 425 ILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (675)
Q Consensus 425 VIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 503 (675)
|+||||.-.- .......++.+.... +..++|+||||+... .+..+|.+++.+..++.+. ++.++...
T Consensus 164 iLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~~P----vEi~Yt~e---- 231 (699)
T KOG0925|consen 164 ILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGTHP----VEIFYTPE---- 231 (699)
T ss_pred EechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCCCc----eEEEecCC----
Confidence 9999996532 122334456666555 589999999998665 5677888888888776322 22222211
Q ss_pred CCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHH----HhcccCCCeeEEEecCCCCHHHHHHHHHH
Q 005837 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK----RFDRKETRVRVLPFHAALDQETRLANMKE 579 (675)
Q Consensus 504 ~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~----~~~~~~~~~~v~~lhg~m~~~eR~~v~~~ 579 (675)
............+++++.....+.++||..+.++++..++.+. .++.....+.|.++| +.++..+++.
T Consensus 232 ----~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep 303 (699)
T KOG0925|consen 232 ----PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEP 303 (699)
T ss_pred ----CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCC
Confidence 1123334566777778777778899999999999888777665 355556668899999 5666666665
Q ss_pred HhcC--CCCCCceEEEEcccccccCCCCCcCEEEEcCC------------------CCCHHHHHHHhcccccCCCCccEE
Q 005837 580 FTTS--RSKEARLFLVCTDRASRGIDFAGVDHVVLFDF------------------PRDPSEYVRRVGRTARGAGGTGKA 639 (675)
Q Consensus 580 F~~g--~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~~g~~g~~ 639 (675)
-... .. ...+|+|+|++++..+.++++.+||+-++ |-|-.+-.||.||||| ..+|+|
T Consensus 304 ~p~~~~~~-~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr--t~pGkc 380 (699)
T KOG0925|consen 304 APEKRNGA-YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR--TRPGKC 380 (699)
T ss_pred CCcccCCC-ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC--CCCCce
Confidence 5422 11 13459999999999999999999999664 3477888999999999 599999
Q ss_pred EEEEeCc
Q 005837 640 FIFVVGK 646 (675)
Q Consensus 640 i~~~~~~ 646 (675)
+.+|+.+
T Consensus 381 frLYte~ 387 (699)
T KOG0925|consen 381 FRLYTEE 387 (699)
T ss_pred EEeecHH
Confidence 9999753
No 113
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.2e-21 Score=203.99 Aligned_cols=321 Identities=17% Similarity=0.143 Sum_probs=209.7
Q ss_pred CCChHHHHHHhhhhhcC---CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g---~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
..++|||++++..+..+ ++.||+.|+|+|||++-+-+++ . -+..+||+|.+...+.||..++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-t--------------ikK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-T--------------IKKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-e--------------ecccEEEEecCccCHHHHHHHH
Confidence 46789999999998854 7899999999999998766554 2 2347999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh--------cccccccceEEEEcCcccccCCcc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~--------~~~~l~~i~~IVIDEaH~l~~~~~ 437 (675)
..+.... +-.++.++.+.+.. ...++.|+|+|+.++..--++ ..+.-+.|.++++||+|.+. ..-
T Consensus 366 k~wsti~-d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP-A~M 438 (776)
T KOG1123|consen 366 KQWSTIQ-DDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP-AKM 438 (776)
T ss_pred HhhcccC-ccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch-HHH
Confidence 9887642 23345555443322 345789999999888532221 12345679999999999998 677
Q ss_pred HHHHHHHHHhhCCCCccEEEEecCCCHHH--------------HHHHHHhC-CCCeEEeCCCccccCCCceEEEEecCCC
Q 005837 438 FEVALQSLISSSPVTAQYLFVTATLPVEI--------------YNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGD 502 (675)
Q Consensus 438 ~~~~l~~il~~~~~~~qiI~lSAT~~~~v--------------~~~l~~~~-~~~~~i~~~~~~~~~~~i~~~~~~~~~~ 502 (675)
|+..+..+..++. +++|||+-.+. ++..+.-+ ....+....-.+.+.+....++......
T Consensus 439 FRRVlsiv~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~ 513 (776)
T KOG1123|consen 439 FRRVLSIVQAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRE 513 (776)
T ss_pred HHHHHHHHHHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhh
Confidence 8888877777776 89999983221 11111100 1111111111111111110000000000
Q ss_pred -CCCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHH
Q 005837 503 -QESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579 (675)
Q Consensus 503 -~~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~ 579 (675)
..........+.+|+..+.-+|+. ..+.++|||..+.-.....+-.|.+ -+++|..++.+|.++++.
T Consensus 514 ~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----------pfIYG~Tsq~ERm~ILqn 583 (776)
T KOG1123|consen 514 NTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----------PFIYGPTSQNERMKILQN 583 (776)
T ss_pred hhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----------ceEECCCchhHHHHHHHh
Confidence 001111223344577766666653 3578999999876655555544432 357999999999999999
Q ss_pred HhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCC--C---CccEEEEEEeCccHH
Q 005837 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGA--G---GTGKAFIFVVGKQVS 649 (675)
Q Consensus 580 F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~--g---~~g~~i~~~~~~d~~ 649 (675)
|+.+. ....|+.+.++...||+|.++++|+.+... |..+-.||.||.-|+. . -+...|.+++.+..+
T Consensus 584 Fq~n~---~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 584 FQTNP---KVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred cccCC---ccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 98764 344899999999999999999999987653 7888899999988831 1 233444555554433
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=8.7e-20 Score=206.40 Aligned_cols=331 Identities=19% Similarity=0.243 Sum_probs=223.3
Q ss_pred CChHHHHHHhhhhhcC----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++-|..++..+.+. ...++.+.||||||.+|+-.+-+.+.+ |..+||++|-++|..|+.+++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------------GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------------GKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------------CCEEEEEeccccchHHHHHHH
Confidence 4567899999998765 678999999999999998877777654 559999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHH----HHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc--CCccHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKT----QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF--NDEDFE 439 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~----~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~--~~~~~~ 439 (675)
+.... .++.++.++.+..+ ..+.......|+|+|-..+ ...+.++.+|||||-|.-. +..+.+
T Consensus 266 ~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 266 KARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCC
Confidence 98654 34556666655443 3344456799999998766 4578899999999999543 222222
Q ss_pred HHHHHH--HhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCcccc-CCCceEEEEecCCCCCCCCchhhhhhhH
Q 005837 440 VALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKTPETAFLNK 516 (675)
Q Consensus 440 ~~l~~i--l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~k 516 (675)
...+.+ +.....++++|+-|||+.-+.+.....-. ............. .+.+. +++........... .....
T Consensus 335 YhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~-y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~--lS~~L 409 (730)
T COG1198 335 YHARDVAVLRAKKENAPVVLGSATPSLESYANAESGK-YKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRS--LSPAL 409 (730)
T ss_pred cCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCc-eEEEEccccccccCCCcce--EEeccccccccCcc--CCHHH
Confidence 222222 33344588999999999988776653310 1112222222211 22222 33332222111000 00112
Q ss_pred HHHHHHHHHhCCCCceEEEecchhhH------------------------------------------------------
Q 005837 517 KSALLQLIEKSPVSKTIVFCNKIVTC------------------------------------------------------ 542 (675)
Q Consensus 517 ~~~l~~ll~~~~~~k~IVF~~s~~~~------------------------------------------------------ 542 (675)
+..+.+-+ ..+.++|+|.|.+.-+
T Consensus 410 l~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 410 LEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLR 487 (730)
T ss_pred HHHHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeE
Confidence 22222222 2355677777765533
Q ss_pred ------HHHHHHHHHhcccCCCeeEEEecCCCCHH--HHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcC
Q 005837 543 ------RKVENILKRFDRKETRVRVLPFHAALDQE--TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614 (675)
Q Consensus 543 ------~~l~~~L~~~~~~~~~~~v~~lhg~m~~~--eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d 614 (675)
+++++.|.++.+. ..+..+.++.+.. .-...+..|.+|+.+ |||.|++++.|.|+|++..|...|
T Consensus 488 ~~G~GterieeeL~~~FP~---~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d----ILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 488 AVGPGTERIEEELKRLFPG---ARIIRIDSDTTRRKGALEDLLDQFANGEAD----ILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred EecccHHHHHHHHHHHCCC---CcEEEEccccccchhhHHHHHHHHhCCCCC----eeecchhhhcCCCcccceEEEEEe
Confidence 7888888887654 6788888886543 356789999999998 999999999999999999987655
Q ss_pred CCC------------CHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHh
Q 005837 615 FPR------------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 615 ~p~------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
... ..+-+.|-+||||| .+.+|.+++-....+...++.++...
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR-~~~~G~VvIQT~~P~hp~i~~~~~~d 615 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGR-AGKPGEVVIQTYNPDHPAIQALKRGD 615 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhcc-CCCCCeEEEEeCCCCcHHHHHHHhcC
Confidence 322 34567899999999 78999999998887766666555443
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=3.2e-19 Score=197.98 Aligned_cols=318 Identities=18% Similarity=0.191 Sum_probs=198.1
Q ss_pred CCChHHHHHHhhhhhc----C-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~----g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
..++.+|..||..+.. | +.++++|+||+|||.+++. ++..|.+. ..-.++|+|+-+.+|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~---------~~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS---------GWVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc---------chhheeeEEechHHHHHHHHH
Confidence 3578999999988653 3 4599999999999998754 44455443 223489999999999999999
Q ss_pred HHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-----ccccccceEEEEcCcccccCCccH
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----ILQLINLRCAILDEVDILFNDEDF 438 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-----~~~l~~i~~IVIDEaH~l~~~~~~ 438 (675)
.+..+...+..++...-..+.. .++|.++|...+....... .+....+++|||||||+-.
T Consensus 234 af~~~~P~~~~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----- 298 (875)
T COG4096 234 AFEDFLPFGTKMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----- 298 (875)
T ss_pred HHHHhCCCccceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-----
Confidence 8888766543333222222111 4789999999998777653 3456669999999999765
Q ss_pred HHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC-CCCeEEeC-----CCccccCCCceEEEEecC------------
Q 005837 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMG-----PGMHRISPGLEEFLVDCS------------ 500 (675)
Q Consensus 439 ~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~-~~~~~i~~-----~~~~~~~~~i~~~~~~~~------------ 500 (675)
....+.|+.++..-. +++|||+...+...-..+| +.+..... ..-+...+.+........
T Consensus 299 ~~~~~~I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~ser 376 (875)
T COG4096 299 YSEWSSILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSER 376 (875)
T ss_pred HhhhHHHHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchh
Confidence 233334544443222 4559998664333333333 11111000 000000111111111000
Q ss_pred ----------CCCCCCCch---hhhhhhHHHHHH----HHHHh--CC--CCceEEEecchhhHHHHHHHHHHhcccCCCe
Q 005837 501 ----------GDQESDKTP---ETAFLNKKSALL----QLIEK--SP--VSKTIVFCNKIVTCRKVENILKRFDRKETRV 559 (675)
Q Consensus 501 ----------~~~~~~~~~---~~~~~~k~~~l~----~ll~~--~~--~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~ 559 (675)
.+....... ..........+. +.+.. .. .+++||||.+..+|+.+...|....+...+-
T Consensus 377 ek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~ 456 (875)
T COG4096 377 EKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGR 456 (875)
T ss_pred hhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCc
Confidence 000000000 000111222232 33333 11 4689999999999999999999887665444
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCcc
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g 637 (675)
-+..+.++- ++-...++.|...+ + .++|.|+.+.+.+|||+|.|..++++....|...|.||+||.-|.++..+
T Consensus 457 ~a~~IT~d~--~~~q~~Id~f~~ke-~-~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~ 530 (875)
T COG4096 457 YAMKITGDA--EQAQALIDNFIDKE-K-YPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLG 530 (875)
T ss_pred eEEEEeccc--hhhHHHHHHHHhcC-C-CCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcccc
Confidence 455666663 33445566676633 2 46799999999999999999999999999999999999999999544444
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.83 E-value=2.7e-18 Score=203.96 Aligned_cols=363 Identities=18% Similarity=0.223 Sum_probs=215.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHhh----hhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 277 DYMIESLKRQNFLRPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 277 ~~l~~~l~~~g~~~~~~iQ~~~i~----~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
+.+.+.+...||. +++.|.+.+. ++..++++++.||||+|||++|++|++.+... +.+++|.+
T Consensus 233 ~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~------------~~~vvi~t 299 (850)
T TIGR01407 233 SLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT------------EKPVVIST 299 (850)
T ss_pred HHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC------------CCeEEEEe
Confidence 4566777777776 7899998666 45567899999999999999999999876541 33899999
Q ss_pred CcHHHHHHHHH-HHHHhhcC-CCCceEEEEECCcchHH---------------H--------------------------
Q 005837 353 PTAELASQVLS-NCRSLSKC-GVPFRSMVVTGGFRQKT---------------Q-------------------------- 389 (675)
Q Consensus 353 Ptr~La~Q~~~-~l~~l~~~-~~~~~v~~l~gg~~~~~---------------~-------------------------- 389 (675)
||++|..|+.. .+..+.+. +.++++..+.|....-. .
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999865 45544432 23466666666542100 0
Q ss_pred ------HHH------------------------hhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-----
Q 005837 390 ------LEN------------------------LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN----- 434 (675)
Q Consensus 390 ------~~~------------------------l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~----- 434 (675)
|.. ....++|||+....|+..+......+....++||||||++.+
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHH
Confidence 000 012378999999988766644333356678999999998742
Q ss_pred -Ccc-----HHHH----------------------------------------------------------------HHH
Q 005837 435 -DED-----FEVA----------------------------------------------------------------LQS 444 (675)
Q Consensus 435 -~~~-----~~~~----------------------------------------------------------------l~~ 444 (675)
+.. +... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 000 0000 000
Q ss_pred HHhh---------------------C---------------------------CCCccEEEEecCCCHH-HHHHHHHhCC
Q 005837 445 LISS---------------------S---------------------------PVTAQYLFVTATLPVE-IYNKLVEVFP 475 (675)
Q Consensus 445 il~~---------------------~---------------------------~~~~qiI~lSAT~~~~-v~~~l~~~~~ 475 (675)
.+.. . .....+|++|||+... -+..+...++
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 0124678899998632 2334444443
Q ss_pred CC--eEEeC-CCccccCCCceEEEEecCCCCCC--CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHH
Q 005837 476 DC--KVVMG-PGMHRISPGLEEFLVDCSGDQES--DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK 550 (675)
Q Consensus 476 ~~--~~i~~-~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~ 550 (675)
-. ..... +..... .++..+.+..+... ..............+.+++... .+++|||++|....+.++..|.
T Consensus 620 l~~~~~~~~~~spf~~---~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNY---AENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred CCccccceecCCCCCH---HHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHh
Confidence 11 11110 111111 11111222222111 1111111122333444444443 4689999999999999999997
Q ss_pred HhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC--EEEEcCCCC-----------
Q 005837 551 RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD--HVVLFDFPR----------- 617 (675)
Q Consensus 551 ~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~--~VI~~d~p~----------- 617 (675)
..... .++.+. ..+.. ..|.+++++|++++.. ||++|+.+.+|||+|+.. .||...+|.
T Consensus 696 ~~~~~-~~~~~l--~q~~~-~~r~~ll~~F~~~~~~----iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~ 767 (850)
T TIGR01407 696 ELPEF-EGYEVL--AQGIN-GSRAKIKKRFNNGEKA----ILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKY 767 (850)
T ss_pred hhccc-cCceEE--ecCCC-ccHHHHHHHHHhCCCe----EEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHH
Confidence 63211 113333 23333 5789999999998776 999999999999999976 466666653
Q ss_pred -------------------CHHHHHHHhcccccCCCCccEEEEEEeC-ccHHHHHHHHHHhcCCCCC
Q 005837 618 -------------------DPSEYVRRVGRTARGAGGTGKAFIFVVG-KQVSLAQRIMERNRKGHPL 664 (675)
Q Consensus 618 -------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~-~d~~~~~~l~~~~~~~~~~ 664 (675)
-+..+.|.+||.-|.....|.++++-.. ....+-+.++........+
T Consensus 768 ~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~~~~~ 834 (850)
T TIGR01407 768 WQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPEYLQV 834 (850)
T ss_pred HHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCCcccc
Confidence 1233579999999954466655544322 2344557777776654433
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.83 E-value=2e-18 Score=199.18 Aligned_cols=315 Identities=16% Similarity=0.141 Sum_probs=180.9
Q ss_pred ChHHHHHHhhhhhc----------CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 291 PSQIQAMAFPPVVE----------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 291 ~~~iQ~~~i~~il~----------g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
++.+|..++..+.. .+..+++++||||||++.+..+...+.. ...+++|||+|+.+|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~----------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL----------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh----------cCCCeEEEEECcHHHHHH
Confidence 78899999988642 2579999999999999876655444321 346799999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhc--cccccc-ceEEEEcCcccccCCc
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG--ILQLIN-LRCAILDEVDILFNDE 436 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~--~~~l~~-i~~IVIDEaH~l~~~~ 436 (675)
+.+.+..++... . .+..+...-...+. ....|+|+|.++|...+... .+.... --+||+||||+.. ..
T Consensus 309 ~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~ 380 (667)
T TIGR00348 309 LMKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ-YG 380 (667)
T ss_pred HHHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc-ch
Confidence 999998875321 0 11111121112222 24689999999998644321 111111 1289999999876 22
Q ss_pred cHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCC--CeEEeCCCccc-----cCCCceEEEEecCCCCCCCC--
Q 005837 437 DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHR-----ISPGLEEFLVDCSGDQESDK-- 507 (675)
Q Consensus 437 ~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~--~~~i~~~~~~~-----~~~~i~~~~~~~~~~~~~~~-- 507 (675)
. +...+....++...++||||+.......-...+.. ...+....+.. ....+...............
T Consensus 381 ~----~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~ 456 (667)
T TIGR00348 381 E----LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLD 456 (667)
T ss_pred H----HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHH
Confidence 2 33333333346789999999853211001111110 00111111100 00011111000000000000
Q ss_pred -------------chhh---hhhh-------------HHHHHHH-HHHh------CCCCceEEEecchhhHHHHHHHHHH
Q 005837 508 -------------TPET---AFLN-------------KKSALLQ-LIEK------SPVSKTIVFCNKIVTCRKVENILKR 551 (675)
Q Consensus 508 -------------~~~~---~~~~-------------k~~~l~~-ll~~------~~~~k~IVF~~s~~~~~~l~~~L~~ 551 (675)
.... .... ....+.. +++. ....+++|||.++..|..+.+.|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 457 AFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHh
Confidence 0000 0000 0011111 1111 1247999999999999999999987
Q ss_pred hcccCCCeeEEEecCCCCHH---------------------HHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEE
Q 005837 552 FDRKETRVRVLPFHAALDQE---------------------TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610 (675)
Q Consensus 552 ~~~~~~~~~v~~lhg~m~~~---------------------eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~V 610 (675)
............+++....+ ....++++|++.. ...|||+++.+.+|+|.|.+.++
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~---~~~ilIVvdmllTGFDaP~l~tL 613 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE---NPKLLIVVDMLLTGFDAPILNTL 613 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC---CceEEEEEcccccccCCCccceE
Confidence 65432122344555543322 2246888997631 34499999999999999999999
Q ss_pred EEcCCCCCHHHHHHHhccccc
Q 005837 611 VLFDFPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 611 I~~d~p~s~~~y~Qr~GRagR 631 (675)
+....-++. .++|.+||+.|
T Consensus 614 yldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 614 YLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEecccccc-HHHHHHHHhcc
Confidence 877766654 58999999999
No 118
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=206.13 Aligned_cols=380 Identities=16% Similarity=0.216 Sum_probs=262.7
Q ss_pred cccCCCCCCCcccccccCCCCCCCcccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc-CCCE
Q 005837 230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSC 308 (675)
Q Consensus 230 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~-g~dv 308 (675)
..++.|.++...-++++.....|+.. ++++++.+..+.+..++.......+.. .+.++|.++++.+.+ ++++
T Consensus 1090 lvSd~wl~s~~~~Pvsfr~l~lpek~---p~pt~lld~~~~~~~~l~N~~~~~lf~----~~n~iqtqVf~~~y~~nd~v 1162 (1674)
T KOG0951|consen 1090 LVSDRWLHSETVLPVSFRHLILPEKY---PPPTELLDLQPLPVSALRNPSFETLFQ----DFNPIQTQVFTSLYNTNDNV 1162 (1674)
T ss_pred EeeccccCCCcccccchhhccCcccC---CCCchhhhccccchhccCCcchhhhcc----ccCCceEEEEeeeecccceE
Confidence 45799999999999999999988765 888888888888877777766666643 337999999999886 5789
Q ss_pred EEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHH
Q 005837 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (675)
Q Consensus 309 ii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~ 388 (675)
++++|+|||||.|+.++++. .....+++++.|.-+.+..+++.|.+-.....+..+..++|......
T Consensus 1163 ~vga~~gsgkt~~ae~a~l~-------------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1163 LVGAPNGSGKTACAELALLR-------------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL 1229 (1674)
T ss_pred EEecCCCCchhHHHHHHhcC-------------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch
Confidence 99999999999999998874 13456899999999999888877655433347778888888776554
Q ss_pred HHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCcc--HH--HHHHHHHhhCCCCccEEEEecCCCH
Q 005837 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED--FE--VALQSLISSSPVTAQYLFVTATLPV 464 (675)
Q Consensus 389 ~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~--~~--~~l~~il~~~~~~~qiI~lSAT~~~ 464 (675)
. +....+|+|+||++|..+ + ..+.++++|.||+|.+.+..+ +. -.++.+-.++-++.+++.+|..+..
T Consensus 1230 k---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1230 K---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLAN 1301 (1674)
T ss_pred H---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhcc
Confidence 4 344678999999999766 2 678899999999999874222 11 1167777777788999999987753
Q ss_pred HHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHH
Q 005837 465 EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCR 543 (675)
Q Consensus 465 ~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~ 543 (675)
.- ++...-.....-+.+.....+..+....+.. .... .... .-....+..+.+. ....+++||++++++|.
T Consensus 1302 a~--d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~--~~~~---~~~~-am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~ 1373 (1674)
T KOG0951|consen 1302 AR--DLIGASSSGVFNFSPSVRPVPLEIHIQSVDI--SHFE---SRML-AMTKPTYTAIVRHAGNRKPAIVFLPTRKHAR 1373 (1674)
T ss_pred ch--hhccccccceeecCcccCCCceeEEEEEecc--chhH---HHHH-HhhhhHHHHHHHHhcCCCCeEEEeccchhhh
Confidence 31 1111111111222222222211222222211 1110 0000 0011112222221 23568999999999998
Q ss_pred HHHHHHHHhccc-------------------CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC
Q 005837 544 KVENILKRFDRK-------------------ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604 (675)
Q Consensus 544 ~l~~~L~~~~~~-------------------~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi 604 (675)
.++..|-.+... ...+.+. |.+|+..+...+...|..|.++ |+|...- .+|+-.
T Consensus 1374 ~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~----v~v~s~~-~~~~~~ 1446 (1674)
T KOG0951|consen 1374 LVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQ----VCVMSRD-CYGTKL 1446 (1674)
T ss_pred hhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEE----EEEEEcc-cccccc
Confidence 887666433221 1112344 9999999999999999999998 9998887 889877
Q ss_pred CCcCEEEE----cC------CCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 605 AGVDHVVL----FD------FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 605 p~v~~VI~----~d------~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
..--+|+. || .+-++.+.+||.|+|.| -|+|++++...+..++++++.
T Consensus 1447 ~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~----~~k~vi~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1447 KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG----AGKCVIMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred cceEEEEecceeecccccccccCchhHHHHHhhhhcC----CccEEEEecCchHHHHHHhcc
Confidence 54444443 22 23359999999999988 579999999999999998853
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=196.12 Aligned_cols=159 Identities=25% Similarity=0.337 Sum_probs=112.4
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|..||.+.+..+-.+++++|+|||.+|||.+....+=.+++. .....+|+++|+.+|+.|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe----------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE----------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh----------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 4788999999999999999999999999999765555555554 335589999999999999987776654
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh---cccccccceEEEEcCcccccCCccHHHHHHHHH
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~---~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il 446 (675)
......+...+.|.....-... .-.|+|+|+-|+.+..++-. .......++++|+||+|.+.+..+ ......++
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed-~l~~Eqll 657 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED-GLLWEQLL 657 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccccc-chHHHHHH
Confidence 3223333444455444332211 11589999999999877765 345678899999999999975221 11111221
Q ss_pred hhCCCCccEEEEecCCC
Q 005837 447 SSSPVTAQYLFVTATLP 463 (675)
Q Consensus 447 ~~~~~~~qiI~lSAT~~ 463 (675)
. -.++++|++|||+.
T Consensus 658 ~--li~CP~L~LSATig 672 (1330)
T KOG0949|consen 658 L--LIPCPFLVLSATIG 672 (1330)
T ss_pred H--hcCCCeeEEecccC
Confidence 1 13678899999984
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.7e-18 Score=189.86 Aligned_cols=334 Identities=19% Similarity=0.256 Sum_probs=216.6
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc----CCCEEEEccCCCCchHHH--HHHHHHHHHHHHhhccCCCCCCCC
Q 005837 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAY--LLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 273 ~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~----g~dvii~apTGsGKTl~~--llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
+.++..|...| .++|++.+.++.+ +.-.|+...+|-|||... .|.++++-. . --.
T Consensus 196 ~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~--k---------~~~ 256 (923)
T KOG0387|consen 196 FKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG--K---------LTK 256 (923)
T ss_pred ccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc--c---------ccC
Confidence 55666666555 4899999999874 456899999999999853 333333321 1 124
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchH--------HHHHH-----hhCCCcEEEeCHHHHHHHHHh
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK--------TQLEN-----LQEGVDVLIATPGRFMFLIKE 413 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~--------~~~~~-----l~~~~~IlV~Tp~~L~~~l~~ 413 (675)
.+|||||.. ++.||.+++..+ ...+++.++++..... ..+.. ......|+|+|++.+. +..
T Consensus 257 paLIVCP~T-ii~qW~~E~~~w---~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~ 330 (923)
T KOG0387|consen 257 PALIVCPAT-IIHQWMKEFQTW---WPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQG 330 (923)
T ss_pred ceEEEccHH-HHHHHHHHHHHh---CcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccC
Confidence 689999965 566666555554 5678898888876631 11111 1124679999998773 222
Q ss_pred cccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCC----C-------------
Q 005837 414 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP----D------------- 476 (675)
Q Consensus 414 ~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~----~------------- 476 (675)
..+.-..|.++|+||.|.+-+. ...+..-++.+. ..+.|++|+|+-.+....++.+|. .
T Consensus 331 d~l~~~~W~y~ILDEGH~IrNp---ns~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~ 406 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHRIRNP---NSKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFE 406 (923)
T ss_pred cccccccccEEEecCcccccCC---ccHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhh
Confidence 3445567999999999999741 223333333343 556688999997776666665431 0
Q ss_pred CeEEeCCCccc----------------------------------cCCCceEEEEecC----------------------
Q 005837 477 CKVVMGPGMHR----------------------------------ISPGLEEFLVDCS---------------------- 500 (675)
Q Consensus 477 ~~~i~~~~~~~----------------------------------~~~~i~~~~~~~~---------------------- 500 (675)
.++..+...+. ..+.-...++-|.
T Consensus 407 ~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ 486 (923)
T KOG0387|consen 407 HPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKIL 486 (923)
T ss_pred hheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHH
Confidence 00101000000 0001111111110
Q ss_pred ------------------CCC-----------CCCCchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHH
Q 005837 501 ------------------GDQ-----------ESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENIL 549 (675)
Q Consensus 501 ------------------~~~-----------~~~~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L 549 (675)
... ..+.........|+..+..++.. ..+.++|+|..++.....+...|
T Consensus 487 ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 487 NGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred cCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHH
Confidence 000 00000011122355555555543 23568999999888887777777
Q ss_pred HHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccc
Q 005837 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629 (675)
Q Consensus 550 ~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 629 (675)
.. ..++.++.+.|..+...|..++++|.++..- ..+|++|.+.+.|+|+..++-||.||+.|++..-.|..-||
T Consensus 567 ~~----~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~--~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRa 640 (923)
T KOG0387|consen 567 RR----AKGYSYLRMDGTTPAALRQKLVDRFNEDESI--FVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERA 640 (923)
T ss_pred Hh----cCCceEEEecCCCccchhhHHHHhhcCCCce--EEEEEEecccccccccccCceEEEECCCCCCccchHHHHHH
Confidence 74 2348999999999999999999999998854 77999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEE
Q 005837 630 ARGAGGTGKAFIF 642 (675)
Q Consensus 630 gR~~g~~g~~i~~ 642 (675)
-| .|++-.+++|
T Consensus 641 wR-iGQkkdV~VY 652 (923)
T KOG0387|consen 641 WR-IGQKKDVVVY 652 (923)
T ss_pred Hh-hcCccceEEE
Confidence 99 6776666554
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.2e-17 Score=188.11 Aligned_cols=289 Identities=21% Similarity=0.285 Sum_probs=188.3
Q ss_pred HHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 281 ESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 281 ~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
+.+.+.....|+..|.--...+..|++.-+.||||.|||.--++..+-.. ..+.++++|+||..|+.|
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a------------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA------------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH------------hcCCeEEEEecCHHHHHH
Confidence 34444333389999999999999999999999999999984433322221 235699999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCc-chHH---HHHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCC
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGF-RQKT---QLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~-~~~~---~~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~ 435 (675)
..+.+.+++.....+.+.+++.+. +.+. ....+. .++||+|+|..-|...... +.--++++|++|++|.++..
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 999999987542234444433333 3333 233444 4699999999877655543 22246889999999966421
Q ss_pred ----------ccHHHH-------HHHH----------------Hh--------hCCCCccEEEEecCCCHH-HHHHHHHh
Q 005837 436 ----------EDFEVA-------LQSL----------------IS--------SSPVTAQYLFVTATLPVE-IYNKLVEV 473 (675)
Q Consensus 436 ----------~~~~~~-------l~~i----------------l~--------~~~~~~qiI~lSAT~~~~-v~~~l~~~ 473 (675)
.+|... +..+ ++ ...+..++++.|||..+. ....+.+.
T Consensus 219 skNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfRe 298 (1187)
T COG1110 219 SKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRE 298 (1187)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHH
Confidence 111111 1111 11 112356899999998432 12222222
Q ss_pred CCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecc---hhhHHHHHHHHH
Q 005837 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK---IVTCRKVENILK 550 (675)
Q Consensus 474 ~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s---~~~~~~l~~~L~ 550 (675)
+.+- -...+. ....++...+... .....+..+++... ..+|||++. ++.++.+++.|+
T Consensus 299 LlgF--evG~~~-~~LRNIvD~y~~~---------------~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr 359 (1187)
T COG1110 299 LLGF--EVGSGG-EGLRNIVDIYVES---------------ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLR 359 (1187)
T ss_pred HhCC--ccCccc-hhhhheeeeeccC---------------ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHH
Confidence 2111 001111 1112222222211 24445566666654 479999999 889999999999
Q ss_pred HhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEc----ccccccCCCCC-cCEEEEcCCC
Q 005837 551 RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT----DRASRGIDFAG-VDHVVLFDFP 616 (675)
Q Consensus 551 ~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT----~~~~~GiDip~-v~~VI~~d~p 616 (675)
.++ +++..+|+. ..+.++.|..|+++ |||.. .++-||||+|. ++++|+++.|
T Consensus 360 ~~G-----i~a~~~~a~-----~~~~le~F~~Geid----vLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 360 SHG-----INAELIHAE-----KEEALEDFEEGEVD----VLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hcC-----ceEEEeecc-----chhhhhhhccCcee----EEEEecccccceeecCCchhheeEEEEecCC
Confidence 877 889989984 37889999999998 88876 46889999998 8899998887
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.80 E-value=2.6e-17 Score=188.06 Aligned_cols=130 Identities=22% Similarity=0.358 Sum_probs=112.2
Q ss_pred HHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEE
Q 005837 516 KKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593 (675)
Q Consensus 516 k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLV 593 (675)
++..+...+.. ..+.++||||++++.++.+++.|.+.+ +.+..+|+++++.+|.+++..|+.|.+. |||
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-----i~~~~lh~~~~~~eR~~~l~~fr~G~i~----VLV 497 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-----IKVRYLHSEIDTLERVEIIRDLRLGEFD----VLV 497 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-----cceeeeeCCCCHHHHHHHHHHHhcCCce----EEE
Confidence 44555555543 346789999999999999999999876 7889999999999999999999999988 999
Q ss_pred EcccccccCCCCCcCEEEEcC-----CCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 594 CTDRASRGIDFAGVDHVVLFD-----FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 594 aT~~~~~GiDip~v~~VI~~d-----~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
||+.+++|+|+|++++||++| .|.+..+|+||+||||| . ..|.|++|+...+....+.|.+
T Consensus 498 ~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR-~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 498 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCC-C-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999988 79999999999999999 3 6899999998776555554443
No 123
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.78 E-value=2.7e-18 Score=188.19 Aligned_cols=341 Identities=18% Similarity=0.266 Sum_probs=219.1
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
++.+||.-.++|+. .+-+.|++..+|-|||... ++.+..+.+.. ..||+ |||||+..|-+ |+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g--------~~gpH-LVVvPsSTleN----Wl 464 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIG--------NPGPH-LVVVPSSTLEN----WL 464 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcC--------CCCCc-EEEecchhHHH----HH
Confidence 36789999999965 3568899999999999864 44555565542 23555 99999776654 88
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhh----CCCcEEEeCHHHHHHHHH-hcccccccceEEEEcCcccccCCccHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIK-EGILQLINLRCAILDEVDILFNDEDFEV 440 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~----~~~~IlV~Tp~~L~~~l~-~~~~~l~~i~~IVIDEaH~l~~~~~~~~ 440 (675)
+++.+|++.+++...+|....+..++... .+++|+++|+........ +..+...++.++|+||+|++.+ ....
T Consensus 465 rEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN--~~Se 542 (941)
T KOG0389|consen 465 REFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN--RTSE 542 (941)
T ss_pred HHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc--cchH
Confidence 88888889999999999987776654322 268999999976642221 2334456788999999999974 2234
Q ss_pred HHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC----CCC--------eEEeCCC------------------------
Q 005837 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF----PDC--------KVVMGPG------------------------ 484 (675)
Q Consensus 441 ~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~----~~~--------~~i~~~~------------------------ 484 (675)
.++.++... ..+.|++|+|+-.+....+..++ |+. ..++...
T Consensus 543 Ry~~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 543 RYKHLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM 620 (941)
T ss_pred HHHHhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh
Confidence 455665433 33458899998544333332211 100 0000000
Q ss_pred ------------ccccCCCceEEE-EecC-------------------CC-CC--CCCc-h-------------------
Q 005837 485 ------------MHRISPGLEEFL-VDCS-------------------GD-QE--SDKT-P------------------- 509 (675)
Q Consensus 485 ------------~~~~~~~i~~~~-~~~~-------------------~~-~~--~~~~-~------------------- 509 (675)
+...++.+.++. +... .. .+ .... .
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 001111111110 0000 00 00 0000 0
Q ss_pred -------------------------------------------------------hhhhhhHHHHHHHHHHhC--CCCce
Q 005837 510 -------------------------------------------------------ETAFLNKKSALLQLIEKS--PVSKT 532 (675)
Q Consensus 510 -------------------------------------------------------~~~~~~k~~~l~~ll~~~--~~~k~ 532 (675)
.-....|...|..+|.+. .+.++
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 000001222333333321 24789
Q ss_pred EEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE
Q 005837 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 533 IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~ 612 (675)
+||..--...+.+...|..++ +.+..+.|...-.+|..+++.|...+. -+.+|++|.+.+.|||+..+++||.
T Consensus 781 LiFSQFTqmLDILE~~L~~l~-----~~ylRLDGsTqV~~RQ~lId~Fn~d~d--ifVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLG-----YKYLRLDGSTQVNDRQDLIDEFNTDKD--IFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcC-----ceEEeecCCccchHHHHHHHhhccCCc--eEEEEEeeccCcceecccccceEEE
Confidence 999977766666666776655 889999999999999999999998873 4779999999999999999999999
Q ss_pred cCCCCCHHHHHHHhcccccCCCCcc--EEEEEEeCccHHHHHHHHHHh
Q 005837 613 FDFPRDPSEYVRRVGRTARGAGGTG--KAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 613 ~d~p~s~~~y~Qr~GRagR~~g~~g--~~i~~~~~~d~~~~~~l~~~~ 658 (675)
||+..++.+-.|.-.||+| -|+.- +++.+++... ..+.|.+.+
T Consensus 854 hD~dFNP~dD~QAEDRcHR-vGQtkpVtV~rLItk~T--IEE~I~~lA 898 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHR-VGQTKPVTVYRLITKST--IEEGILRLA 898 (941)
T ss_pred eecCCCCcccchhHHHHHh-hCCcceeEEEEEEecCc--HHHHHHHHH
Confidence 9999999999999999999 45544 4555555443 344444433
No 124
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.6e-18 Score=192.05 Aligned_cols=123 Identities=18% Similarity=0.227 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.|..++.+.+.. ..+.++||||+|++.++.++..|...+ +.+..+|+ .+.+|...+..|..+... |+
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g-----I~h~vLna--kq~~REa~Iia~AG~~g~----Vt 650 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR-----IAHNVLNA--KQHDREAEIVAEAGQKGA----VT 650 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC-----CCceeecC--CHHHhHHHHHHhcCCCCe----EE
Confidence 577778877744 357899999999999999999999876 77888897 588999999999998877 99
Q ss_pred EEcccccccCCCC---CcC-----EEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 593 VCTDRASRGIDFA---GVD-----HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 593 VaT~~~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
|||++++||+||+ .|. +||++..|.|...|.|++||+|| .|.+|.++.|++.+|.-
T Consensus 651 IATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGR-qGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 651 IATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGR-QGDPGESVFYVSLEDEL 714 (1025)
T ss_pred EeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhc-CCCCcceEEEechhHHH
Confidence 9999999999998 554 45999999999999999999999 79999999999987743
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=7.6e-17 Score=185.43 Aligned_cols=136 Identities=20% Similarity=0.313 Sum_probs=112.7
Q ss_pred HHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEE
Q 005837 516 KKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593 (675)
Q Consensus 516 k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLV 593 (675)
+...+...+.. ..+.++||||++++.++.+++.|.+.+ +.+..+|+++++.+|..++..|+.|... |||
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g-----i~~~~~h~~~~~~~R~~~l~~f~~g~i~----vlV 501 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG-----IKVRYLHSDIDTLERVEIIRDLRLGEFD----VLV 501 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc-----eeEEEEECCCCHHHHHHHHHHHHcCCce----EEE
Confidence 34445554443 246789999999999999999998865 8899999999999999999999999888 999
Q ss_pred EcccccccCCCCCcCEEEEcCC-----CCCHHHHHHHhcccccCCCCccEEEEEEeCc---------cHHHHHHHHHHhc
Q 005837 594 CTDRASRGIDFAGVDHVVLFDF-----PRDPSEYVRRVGRTARGAGGTGKAFIFVVGK---------QVSLAQRIMERNR 659 (675)
Q Consensus 594 aT~~~~~GiDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~---------d~~~~~~l~~~~~ 659 (675)
||+.+++|+|+|++++||+++. |.+...|+||+||+|| . ..|.|++|+... +....+++.....
T Consensus 502 ~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR-~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 579 (652)
T PRK05298 502 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N-VNGKVILYADKITDSMQKAIDETERRREIQIAYN 579 (652)
T ss_pred EeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccC-C-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999874 7899999999999999 3 689999999853 4445555554444
Q ss_pred CCC
Q 005837 660 KGH 662 (675)
Q Consensus 660 ~~~ 662 (675)
...
T Consensus 580 ~~~ 582 (652)
T PRK05298 580 EEH 582 (652)
T ss_pred hcc
Confidence 433
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.77 E-value=2.9e-17 Score=160.39 Aligned_cols=180 Identities=36% Similarity=0.533 Sum_probs=144.2
Q ss_pred CCCCCChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
+++..++++|.+++..++.. +++++.++||+|||.++..+++..+.... ..+++|++|+..++.|+...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----------~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----------GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----------CCcEEEEeCCHHHHHHHHHH
Confidence 45678999999999999988 99999999999999999998888775431 34799999999999999999
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCC-cEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHH
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~-~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~ 443 (675)
+.++... .........++......+..+.... +++++|++.+...+.........++++||||+|.+. ...+...+.
T Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~ 151 (201)
T smart00487 74 LKKLGPS-LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL-DGGFGDQLE 151 (201)
T ss_pred HHHHhcc-CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh-cCCcHHHHH
Confidence 9887653 2223444555555455555555555 999999999999888766677889999999999998 336777888
Q ss_pred HHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCC
Q 005837 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (675)
Q Consensus 444 ~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~ 477 (675)
.++.......+++++|||++..........+...
T Consensus 152 ~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~ 185 (201)
T smart00487 152 KLLKLLPKNVQLLLLSATPPEEIENLLELFLNDP 185 (201)
T ss_pred HHHHhCCccceEEEEecCCchhHHHHHHHhcCCC
Confidence 8888777789999999999987777776666543
No 127
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.7e-17 Score=175.28 Aligned_cols=342 Identities=10% Similarity=0.073 Sum_probs=226.7
Q ss_pred HHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH
Q 005837 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (675)
Q Consensus 283 l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~ 362 (675)
+..+.-..+..+|.++++.+..|+++++.-.|.+||++||.+.+...+... .....+++.|+.++++...
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~----------~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC----------HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC----------cccceecchhHHHHhhccC
Confidence 344666778899999999999999999999999999999999887766542 2335789999999998765
Q ss_pred HHHHHhhcC--CCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHH-Hhc---ccccccceEEEEcCcccccCC-
Q 005837 363 SNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI-KEG---ILQLINLRCAILDEVDILFND- 435 (675)
Q Consensus 363 ~~l~~l~~~--~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l-~~~---~~~l~~i~~IVIDEaH~l~~~- 435 (675)
+-+.-.... ...-.++..+.+.+........+.+..++++.|.++.... .+. ...+-...++++||+|.+..-
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 432211110 0111244555555555555566678999999999886433 221 123445678999999988741
Q ss_pred -ccHHHHHHHHHhhC-----CCCccEEEEecCCCHHHHHHHHHhCC-CCeEEeCCCccccCCCceEEEEecCCCCCCCCc
Q 005837 436 -EDFEVALQSLISSS-----PVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (675)
Q Consensus 436 -~~~~~~l~~il~~~-----~~~~qiI~lSAT~~~~v~~~l~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 508 (675)
......++.++..+ ..+.|++-.+||+...+.. ...++. +...++ .....+..-.++++.-+........
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li--~~DGSPs~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELV--TIDGSPSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEE--EecCCCCccceEEEeCCCCCCcchh
Confidence 12223344444332 2467888889998666542 223332 111111 1222334445555554443322221
Q ss_pred hhhh-hhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCC---eeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 509 PETA-FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR---VRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 509 ~~~~-~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~---~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
.... ..+.-..+.+++.. +-++|-||.+++.|+.+-...++....... -.+..|.|+.+.++|.++....-.|+
T Consensus 506 ~~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe
Confidence 1111 11222233444433 458999999999999886655543321111 23567899999999999999998888
Q ss_pred CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 585 ~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
.. -+|||++++.|||+...+.|++.++|.|+.++.|..||||| .+++.-++....
T Consensus 584 L~----giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGR-RNk~SLavyva~ 638 (1034)
T KOG4150|consen 584 LC----GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGR-RNKPSLAVYVAF 638 (1034)
T ss_pred ee----EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccc-cCCCceEEEEEe
Confidence 77 89999999999999999999999999999999999999999 667666654433
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.5e-16 Score=175.70 Aligned_cols=313 Identities=19% Similarity=0.159 Sum_probs=203.5
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|++.|.-+.-.++.| -|+.|.||.|||+++.+|++..... |..+.|++|+.-||.+-++++..+.
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~------------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ------------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc------------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 6889999999888887 4789999999999999998866644 4578999999999999999999988
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCcccccCC-------
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILFND------- 435 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l~~~------- 435 (675)
.+ .++++.++.++.+.......+ .+||+++|..-+- ++++.. ......+.+.||||+|.++-|
T Consensus 144 ~~-LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 144 EA-LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred Hh-cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 75 788999998887755443333 5899999997763 333321 223456889999999965211
Q ss_pred -------ccHHHHHHHHHhhCCC--------Cc-----------------------------------------------
Q 005837 436 -------EDFEVALQSLISSSPV--------TA----------------------------------------------- 453 (675)
Q Consensus 436 -------~~~~~~l~~il~~~~~--------~~----------------------------------------------- 453 (675)
......+..+...+.. ..
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 1111112222222211 01
Q ss_pred ---------------------------------------------------------------cEEEEecCCCHHHHHHH
Q 005837 454 ---------------------------------------------------------------QYLFVTATLPVEIYNKL 470 (675)
Q Consensus 454 ---------------------------------------------------------------qiI~lSAT~~~~v~~~l 470 (675)
++-+||+|...+. ..+
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~-~Ef 379 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG-EQL 379 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH-HHH
Confidence 2223333322111 112
Q ss_pred HHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC---CchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHH
Q 005837 471 VEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD---KTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKV 545 (675)
Q Consensus 471 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l 545 (675)
.+.+. +....++........ .........|..++.+-+.. ..+.++||.|.|++..+.+
T Consensus 380 ~~iY~----------------l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~l 443 (764)
T PRK12326 380 RQFYD----------------LGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEEL 443 (764)
T ss_pred HHHhC----------------CcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHH
Confidence 22221 111111110000000 00111122355555554432 3578999999999999999
Q ss_pred HHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC---------------cCEE
Q 005837 546 ENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG---------------VDHV 610 (675)
Q Consensus 546 ~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~---------------v~~V 610 (675)
+..|.+.+ +....+++.-...+-..|-+.=+.| .|.|||++++||.||.= ==||
T Consensus 444 s~~L~~~g-----I~h~vLNAk~~~~EA~IIa~AG~~g------aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhV 512 (764)
T PRK12326 444 AERLRAAG-----VPAVVLNAKNDAEEARIIAEAGKYG------AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHV 512 (764)
T ss_pred HHHHHhCC-----CcceeeccCchHhHHHHHHhcCCCC------cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEE
Confidence 99999876 6666677764333322232322333 39999999999999851 1278
Q ss_pred EEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 611 I~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
|-...+.|..--.|-.||+|| .|.+|.+-.|++-+|.
T Consensus 513 IgTerheSrRID~QLrGRaGR-QGDpGss~f~lSleDd 549 (764)
T PRK12326 513 IGTGRHRSERLDNQLRGRAGR-QGDPGSSVFFVSLEDD 549 (764)
T ss_pred EeccCCchHHHHHHHhccccc-CCCCCceeEEEEcchh
Confidence 988899999999999999999 7999999999987773
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=7.3e-16 Score=180.98 Aligned_cols=345 Identities=17% Similarity=0.231 Sum_probs=204.8
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH-HH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-SN 364 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~-~~ 364 (675)
.+++-|.+....+. ++..+++.|+||+|||++|++|++... .+.++||++||++|++|+. +.
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHHHHHH
Confidence 58899988665543 468899999999999999999988643 2458999999999999994 66
Q ss_pred HHHhhcCCCCceEEEEECCcchHHH-----------------------------------------------HHHh----
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQ-----------------------------------------------LENL---- 393 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~-----------------------------------------------~~~l---- 393 (675)
+..+.+. .++++..+.|+...-.. |..+
T Consensus 312 i~~l~~~-~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 312 VKAIQEV-FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHh-cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 6666553 45566666665421100 0100
Q ss_pred --------------------hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC------Ccc--HHH-----
Q 005837 394 --------------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN------DED--FEV----- 440 (675)
Q Consensus 394 --------------------~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~------~~~--~~~----- 440 (675)
...++|+|+....|+..+.... .+..++++||||||++.. ... +..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 1237899999998876654432 367799999999998753 010 000
Q ss_pred ------------------------------------------------HH-----------HHHHhhC------------
Q 005837 441 ------------------------------------------------AL-----------QSLISSS------------ 449 (675)
Q Consensus 441 ------------------------------------------------~l-----------~~il~~~------------ 449 (675)
.+ ..++...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00 0000000
Q ss_pred ---------------------CCCccEEEEecCCCH-HHHHHHHHhCC--CCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 450 ---------------------PVTAQYLFVTATLPV-EIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 450 ---------------------~~~~qiI~lSAT~~~-~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
.....+|++|||++. ..+. +...++ .......+ .. +. ++..+....+...
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~~--~~-~~~~~~i~~~~p~ 623 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--KD--KK-QDQLVVVDQDMPL 623 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--CC--hH-HccEEEeCCCCCC
Confidence 011356788888752 1112 233332 11111111 00 11 1111111111111
Q ss_pred -C-CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC
Q 005837 506 -D-KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS 583 (675)
Q Consensus 506 -~-~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g 583 (675)
. .............+..++ ..+++++|+++|.+..+.+++.|.... ..+ ...|.-. .+.+++++|+++
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~-----~~~-l~Qg~~~--~~~~l~~~F~~~ 693 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQ-----VSH-LAQEKNG--TAYNIKKRFDRG 693 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcC-----CcE-EEeCCCc--cHHHHHHHHHcC
Confidence 1 111111122333343443 346799999999999999999997531 333 3344211 256689999987
Q ss_pred CCCCCceEEEEcccccccCCCCC--cCEEEEcCCCC------------------------------CHHHHHHHhccccc
Q 005837 584 RSKEARLFLVCTDRASRGIDFAG--VDHVVLFDFPR------------------------------DPSEYVRRVGRTAR 631 (675)
Q Consensus 584 ~~~~~~~VLVaT~~~~~GiDip~--v~~VI~~d~p~------------------------------s~~~y~Qr~GRagR 631 (675)
... ||++|..+.+|||+|+ ...||...+|. -+..+.|-+||.-|
T Consensus 694 ~~~----vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIR 769 (820)
T PRK07246 694 EQQ----ILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMR 769 (820)
T ss_pred CCe----EEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhccccc
Confidence 666 9999999999999973 55566666552 12345799999999
Q ss_pred CCCCccEEEEEEeC-ccHHHHHHHHHHhcCCCCCCCCCh
Q 005837 632 GAGGTGKAFIFVVG-KQVSLAQRIMERNRKGHPLHDVPS 669 (675)
Q Consensus 632 ~~g~~g~~i~~~~~-~d~~~~~~l~~~~~~~~~~~~l~~ 669 (675)
.....|.++++=.. ....+-+.+++.+.+..++..++-
T Consensus 770 s~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~~~~~~~~~~ 808 (820)
T PRK07246 770 REDQKSAVLILDRRILTKSYGKQILASLAEEFLISQQNF 808 (820)
T ss_pred CCCCcEEEEEECCcccccHHHHHHHHhCCCCCccccCCH
Confidence 54567765555333 234566888888877666655543
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.73 E-value=2e-15 Score=159.92 Aligned_cols=108 Identities=19% Similarity=0.342 Sum_probs=100.2
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v 607 (675)
.+.+++|-+-|++.++.+.++|.+++ +++.++|++...-+|.++++.++.|.+. |||.-+.+..|+|+|.|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~g-----ikv~YlHSdidTlER~eIirdLR~G~~D----vLVGINLLREGLDiPEV 515 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELG-----IKVRYLHSDIDTLERVEIIRDLRLGEFD----VLVGINLLREGLDLPEV 515 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcC-----ceEEeeeccchHHHHHHHHHHHhcCCcc----EEEeehhhhccCCCcce
Confidence 46899999999999999999999987 9999999999999999999999999998 99999999999999999
Q ss_pred CEEEEcCCC-----CCHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 608 DHVVLFDFP-----RDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 608 ~~VI~~d~p-----~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
..|..+|.. .|-.+++|-+|||.| +-.|++++|...-
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAAR--N~~GkvIlYAD~i 557 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAAR--NVNGKVILYADKI 557 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhh--ccCCeEEEEchhh
Confidence 999998865 489999999999999 5799999887653
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.73 E-value=5e-16 Score=176.67 Aligned_cols=348 Identities=17% Similarity=0.223 Sum_probs=216.8
Q ss_pred CChHHHHHHhhhhh--c--CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV--E--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il--~--g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.++.||++.++|+. + +-+.|+|..+|-|||+..+-.+.....+.+-+ .......-.||+||+. |+--|..++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~---~~e~~~~PSLIVCPsT-LtGHW~~E~ 1050 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE---SSEFNRLPSLIVCPST-LTGHWKSEV 1050 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc---chhhccCCeEEECCch-hhhHHHHHH
Confidence 46889999999953 2 35889999999999996544333322222100 0111122379999975 888888888
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCC-ccHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND-EDFEVALQS 444 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~-~~~~~~l~~ 444 (675)
.++..+ +++....|....+...+..-++.+|+|++++.+.+-... +.-..|.|+|+||-|.|-+. ......++.
T Consensus 1051 ~kf~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~ktkl~kavkq 1125 (1549)
T KOG0392|consen 1051 KKFFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQ 1125 (1549)
T ss_pred HHhcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecchHHHHHHHHHH
Confidence 887654 677888888777776666666789999999988633321 22345889999999999742 122233333
Q ss_pred HHhhCCCCccEEEEecCCCHHHHHHHHHh---------------------------------------------------
Q 005837 445 LISSSPVTAQYLFVTATLPVEIYNKLVEV--------------------------------------------------- 473 (675)
Q Consensus 445 il~~~~~~~qiI~lSAT~~~~v~~~l~~~--------------------------------------------------- 473 (675)
+-.+.+ +++|+|+-.+....++.+
T Consensus 1126 L~a~hR-----LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVL 1200 (1549)
T KOG0392|consen 1126 LRANHR-----LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVL 1200 (1549)
T ss_pred Hhhcce-----EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHH
Confidence 333222 778999721111111110
Q ss_pred ------C-----CC--CeEEeC----------------------------CCccccCCC--------ce-------EE-E
Q 005837 474 ------F-----PD--CKVVMG----------------------------PGMHRISPG--------LE-------EF-L 496 (675)
Q Consensus 474 ------~-----~~--~~~i~~----------------------------~~~~~~~~~--------i~-------~~-~ 496 (675)
+ .+ +.++.. ......... +. +- .
T Consensus 1201 PF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaL 1280 (1549)
T KOG0392|consen 1201 PFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPAL 1280 (1549)
T ss_pred HHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcce
Confidence 0 00 000000 000000000 00 00 0
Q ss_pred EecCCCC-----------CCCCchhhhhhhHHHHHHHHHHhC----------------CCCceEEEecchhhHHHHHHHH
Q 005837 497 VDCSGDQ-----------ESDKTPETAFLNKKSALLQLIEKS----------------PVSKTIVFCNKIVTCRKVENIL 549 (675)
Q Consensus 497 ~~~~~~~-----------~~~~~~~~~~~~k~~~l~~ll~~~----------------~~~k~IVF~~s~~~~~~l~~~L 549 (675)
+...... .....+......|+.+|.+++... .++++||||.-+...+.+.+.|
T Consensus 1281 vlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1281 VLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 0000000 000011123345778888887542 2468999999999999998877
Q ss_pred HHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccc
Q 005837 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629 (675)
Q Consensus 550 ~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 629 (675)
.+.... .+....+.|..++.+|.++.++|.++..- -+.|++|-+.+.|+|+.+++.||+++-.|++..-+|.+.||
T Consensus 1361 ~k~~mp--sVtymRLDGSVpp~~R~kiV~~FN~DptI--DvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1361 FKKYMP--SVTYMRLDGSVPPGDRQKIVERFNEDPTI--DVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred hhhhcC--ceeEEEecCCCCcHHHHHHHHHhcCCCce--eEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 654321 25567899999999999999999999532 24667779999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 630 ARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 630 gR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
+| .|++-.+-+|---..-.+.+++|.
T Consensus 1437 HR-IGQKrvVNVyRlItrGTLEEKVMg 1462 (1549)
T KOG0392|consen 1437 HR-IGQKRVVNVYRLITRGTLEEKVMG 1462 (1549)
T ss_pred Hh-hcCceeeeeeeehhcccHHHHHhh
Confidence 99 677766655544344444555544
No 132
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.72 E-value=1.4e-15 Score=171.58 Aligned_cols=336 Identities=20% Similarity=0.220 Sum_probs=205.1
Q ss_pred CChHHHHHHhhhhhc---CC-------CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 290 RPSQIQAMAFPPVVE---GK-------SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~---g~-------dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
.++|+|.+.+.-+.. |. -+|++-.+|+|||+..+..+...+...+.. ...-.+.|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~-----~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQA-----KPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCc-----cccccccEEEccH-HHHH
Confidence 467999999988764 22 378888999999997655554444443210 0011478999996 4888
Q ss_pred HHHHHHHHhhcCCCCceEEEEECCcchHHHHHHh---------hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcc
Q 005837 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430 (675)
Q Consensus 360 Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l---------~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH 430 (675)
.|++++.++... ..+....+++..+. .|... ....-|++-+.+.+.+..+. +....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCC
Confidence 888888887653 24666677777664 11111 11245888888888766654 456778999999999
Q ss_pred cccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC----C-------------------------------
Q 005837 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF----P------------------------------- 475 (675)
Q Consensus 431 ~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~----~------------------------------- 475 (675)
++-+. ...+...+..+. ..+-|++|+|+-++.+..+..++ |
T Consensus 387 rlkN~---~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 387 RLKNS---DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred Cccch---hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 98632 222333334443 34457899998443332222211 0
Q ss_pred -------------CCeEEeC-CCccccCCCceEEEEecCCCCCC------------------------------------
Q 005837 476 -------------DCKVVMG-PGMHRISPGLEEFLVDCSGDQES------------------------------------ 505 (675)
Q Consensus 476 -------------~~~~i~~-~~~~~~~~~i~~~~~~~~~~~~~------------------------------------ 505 (675)
....... ..+....|....+++-+......
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred hHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 0000000 01111112222222211110000
Q ss_pred ------------CCc--------------hhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCe
Q 005837 506 ------------DKT--------------PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559 (675)
Q Consensus 506 ------------~~~--------------~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~ 559 (675)
... .......++..|..++... ..++++|+.-+....++-+.+..+..-. ++
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~-g~ 620 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWR-GY 620 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhc-Cc
Confidence 000 0000011222233332111 1345555554444444444444433222 58
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~ 639 (675)
.++.+||.|+..+|..+++.|.+.... .+.+|.+|.+.+.||++-++..||.||.+++++.-.|.++||-| .|++-.|
T Consensus 621 ~~~rLdG~~~~~qRq~~vd~FN~p~~~-~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~R-dGQKk~v 698 (776)
T KOG0390|consen 621 EVLRLDGKTSIKQRQKLVDTFNDPESP-SFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWR-DGQKKPV 698 (776)
T ss_pred eEEEEcCCCchHHHHHHHHhccCCCCC-ceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhcc-CCCcceE
Confidence 999999999999999999999998765 67788889999999999999999999999999999999999999 8998888
Q ss_pred EEEEe
Q 005837 640 FIFVV 644 (675)
Q Consensus 640 i~~~~ 644 (675)
|+|-.
T Consensus 699 ~iYrL 703 (776)
T KOG0390|consen 699 YIYRL 703 (776)
T ss_pred EEEEe
Confidence 87743
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.4e-15 Score=173.53 Aligned_cols=126 Identities=22% Similarity=0.205 Sum_probs=96.8
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++|...--.+..| -|+.|.||+|||+++.+|++-.... |..+.|++|+.-||.+-+.++..+.
T Consensus 82 ~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~------------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS------------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 5677776665555444 6899999999999999998866543 5578999999999999999999988
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc------ccccccceEEEEcCcccc
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDIL 432 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~i~~IVIDEaH~l 432 (675)
.+ .++.+.++.++.+.......+ .++|+|+|..-| .++++.. ......+.++||||+|.+
T Consensus 148 ~~-lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EF-LGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cc-cCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 76 678999998877665544433 389999999886 2444432 112477899999999976
No 134
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=3.1e-16 Score=175.98 Aligned_cols=346 Identities=19% Similarity=0.241 Sum_probs=225.1
Q ss_pred CCChHHHHHHhhhhhc----CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~----g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
..+.+||...+.++.+ +-|.|++..+|-|||..-+- .+.++.+.+ ...||+ |||+|+..|.. |
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K-------~~~GP~-LvivPlstL~N----W 459 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHK-------QMQGPF-LIIVPLSTLVN----W 459 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHc-------ccCCCe-EEeccccccCC----c
Confidence 3788999999988764 35899999999999996533 444555432 134566 99999988876 6
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHH--HHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHH
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQL--ENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~--~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
-.++..|...+......|....+... .....+++|+++|++.+.. ....+.--+|.++||||.|+|.+ ..-.+
T Consensus 460 ~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN---a~~KL 534 (1157)
T KOG0386|consen 460 SSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN---AICKL 534 (1157)
T ss_pred hhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc---hhhHH
Confidence 67777776777777666665544332 2233679999999998864 22233445688999999999973 22333
Q ss_pred HHHHhhCCCCccEEEEecCCCHHHHHHHHHh----CCCCe--------------EEeCCCc--------------c----
Q 005837 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEV----FPDCK--------------VVMGPGM--------------H---- 486 (675)
Q Consensus 443 ~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~----~~~~~--------------~i~~~~~--------------~---- 486 (675)
...+.........+++|+|+-.+....++.+ +|++- ...+... |
T Consensus 535 t~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLR 614 (1157)
T KOG0386|consen 535 TDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLR 614 (1157)
T ss_pred HHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhh
Confidence 4444433334455788999844332222221 11100 0000000 0
Q ss_pred ------------ccCCCceEEEEecC-----------------------------------------------------C
Q 005837 487 ------------RISPGLEEFLVDCS-----------------------------------------------------G 501 (675)
Q Consensus 487 ------------~~~~~i~~~~~~~~-----------------------------------------------------~ 501 (675)
...|.-...++.|. .
T Consensus 615 PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~ 694 (1157)
T KOG0386|consen 615 PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN 694 (1157)
T ss_pred HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc
Confidence 00000000011110 0
Q ss_pred CCCCCC--chhhhhhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHH
Q 005837 502 DQESDK--TPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577 (675)
Q Consensus 502 ~~~~~~--~~~~~~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~ 577 (675)
...... ........|+..|..++-+. .+++++.||....-...+.++|.-. ++....+.|....++|...+
T Consensus 695 ~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~-----~~kYlRLDG~TK~~eRg~ll 769 (1157)
T KOG0386|consen 695 SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR-----EYKYLRLDGQTKVEERGDLL 769 (1157)
T ss_pred ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh-----hhheeeecCCcchhhHHHHH
Confidence 000000 00111123455555555433 3689999996665555555655433 37889999999999999999
Q ss_pred HHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 578 ~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
+.|...... .+.+|+.|.+.+.|+|+..++.||.||..+++..+.|+-.||.| .|+.-.+-++....-....++|+..
T Consensus 770 ~~FN~Pds~-yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahr-igq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 770 EIFNAPDSP-YFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHR-IGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred HHhcCCCCc-eeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHH-hhchhheeeeeeehhhHHHHHHHHH
Confidence 999998876 88899999999999999999999999999999999999999999 7888887777776677777777776
Q ss_pred hc
Q 005837 658 NR 659 (675)
Q Consensus 658 ~~ 659 (675)
+.
T Consensus 848 a~ 849 (1157)
T KOG0386|consen 848 AF 849 (1157)
T ss_pred HH
Confidence 43
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=1.2e-13 Score=155.92 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcC----CCCCCceE
Q 005837 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS----RSKEARLF 591 (675)
Q Consensus 516 k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g----~~~~~~~V 591 (675)
....+..++... .++++|.+.|...++.++..|..... +. +.+.|+.+ .+...+++|++. ... |
T Consensus 458 ~~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~----~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~----v 525 (636)
T TIGR03117 458 VSLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIP----AE-IVIQSEKN--RLASAEQQFLALYANGIQP----V 525 (636)
T ss_pred HHHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcC----CC-EEEeCCCc--cHHHHHHHHHHhhcCCCCc----E
Confidence 344555555544 46899999999999999999976431 22 34566532 456688888874 444 9
Q ss_pred EEEcccccccCCC--------C--CcCEEEEcCCCCC-------------------------HHHHHHHhcccccCCCC-
Q 005837 592 LVCTDRASRGIDF--------A--GVDHVVLFDFPRD-------------------------PSEYVRRVGRTARGAGG- 635 (675)
Q Consensus 592 LVaT~~~~~GiDi--------p--~v~~VI~~d~p~s-------------------------~~~y~Qr~GRagR~~g~- 635 (675)
|++|..+..|||+ | .+..||...+|.. .-.+.|-+||.-|....
T Consensus 526 L~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~ 605 (636)
T TIGR03117 526 LIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMP 605 (636)
T ss_pred EEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCc
Confidence 9999999999999 2 3888998777631 22357999999995445
Q ss_pred -ccEEEEEEeCccHHHHHHHHH
Q 005837 636 -TGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 636 -~g~~i~~~~~~d~~~~~~l~~ 656 (675)
.|..+++-..-...+-+.+.+
T Consensus 606 ~~G~i~ilD~R~~~~yg~~~~~ 627 (636)
T TIGR03117 606 QNRRIHMLDGRIHWPYMESWQE 627 (636)
T ss_pred CceEEEEEeCCCCchhHHHHHH
Confidence 676666654433344444443
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=5.7e-16 Score=141.56 Aligned_cols=118 Identities=33% Similarity=0.597 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhCC--CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEKSP--VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~~~--~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.+...+.+++.... ++++||||++...++.+++.|.+.. ..+..+||+++..+|..+++.|.++... +|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~f~~~~~~----il 82 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG-----IKVAALHGDGSQEEREEVLKDFREGEIV----VL 82 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC-----CcEEEEECCCCHHHHHHHHHHHHcCCCc----EE
Confidence 36666777776653 7899999999999999999998743 7889999999999999999999999877 99
Q ss_pred EEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEE
Q 005837 593 VCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 593 VaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
++|.++++|+|+|.+++||+++.+++...|.|++||++| .|+.|.|++|
T Consensus 83 i~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R-~~~~~~~~~~ 131 (131)
T cd00079 83 VATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGR-AGQKGTAILL 131 (131)
T ss_pred EEcChhhcCcChhhCCEEEEeCCCCCHHHheeccccccc-CCCCceEEeC
Confidence 999999999999999999999999999999999999999 6788888764
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.66 E-value=4.6e-15 Score=155.37 Aligned_cols=323 Identities=18% Similarity=0.239 Sum_probs=205.7
Q ss_pred ChHHHHHHhhhhhc-CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 291 PSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 291 ~~~iQ~~~i~~il~-g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
+-|+|.+.+...++ |-.+++...+|-|||+.++.-+.. ++.+ + -.||+||.. +-..|++.+..+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y-yraE-----------w-plliVcPAs-vrftWa~al~r~l 264 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY-YRAE-----------W-PLLIVCPAS-VRFTWAKALNRFL 264 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH-Hhhc-----------C-cEEEEecHH-HhHHHHHHHHHhc
Confidence 34899999988764 678999999999999987543332 2221 2 469999964 5667888888876
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
....+ +.++.++...... +.....|.|++++++..+-. .+....++++|+||.|++-.. -....+.+...+
T Consensus 265 ps~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s--ktkr~Ka~~dll 335 (689)
T KOG1000|consen 265 PSIHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS--KTKRTKAATDLL 335 (689)
T ss_pred ccccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc--chhhhhhhhhHH
Confidence 54333 4445544433221 22346799999998864433 344556899999999999732 222244444444
Q ss_pred CCCccEEEEecCC----CHHHHHHHH---------------HhCCCC--eEEeCC-------------------------
Q 005837 450 PVTAQYLFVTATL----PVEIYNKLV---------------EVFPDC--KVVMGP------------------------- 483 (675)
Q Consensus 450 ~~~~qiI~lSAT~----~~~v~~~l~---------------~~~~~~--~~i~~~------------------------- 483 (675)
..-..+|++|+|+ |.+++..+. +++... ......
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999997 333332221 111100 000000
Q ss_pred CccccCCCceEEEEecCCCCCCCCc------------------h-------hhhhhhHHHHHHHHHHh------CCCCce
Q 005837 484 GMHRISPGLEEFLVDCSGDQESDKT------------------P-------ETAFLNKKSALLQLIEK------SPVSKT 532 (675)
Q Consensus 484 ~~~~~~~~i~~~~~~~~~~~~~~~~------------------~-------~~~~~~k~~~l~~ll~~------~~~~k~ 532 (675)
-+...++.-+..++.+.+....... + ......|...+.+.+.. .+..++
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 0012233322333322221111000 0 00011233444444433 245789
Q ss_pred EEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE
Q 005837 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 533 IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~ 612 (675)
+|||......+.+...+.+.+ +....+.|..+..+|....+.|+.++.- ...++.-.+++.|+++...+.|++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~-----vg~IRIDGst~s~~R~ll~qsFQ~seev--~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRK-----VGSIRIDGSTPSHRRTLLCQSFQTSEEV--RVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcC-----CCeEEecCCCCchhHHHHHHHhccccce--EEEEEEEeecccceeeeccceEEE
Confidence 999999999999998888765 7889999999999999999999988632 223444567889999999999999
Q ss_pred cCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 613 FDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 613 ~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
..+++++.-++|.-.|+.| .|++..+.++|.
T Consensus 569 aEL~wnPgvLlQAEDRaHR-iGQkssV~v~yl 599 (689)
T KOG1000|consen 569 AELHWNPGVLLQAEDRAHR-IGQKSSVFVQYL 599 (689)
T ss_pred EEecCCCceEEechhhhhh-ccccceeeEEEE
Confidence 9999999999999999999 677776655543
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=4.5e-16 Score=171.44 Aligned_cols=339 Identities=20% Similarity=0.267 Sum_probs=190.5
Q ss_pred CCCCCChHHHHHHhhhhhcC----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
..-.+|+|+|++|+++.+++ ...=++|.+|+|||++.+- +.+.+.. .++|+++|+.+|..|.
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-------------~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-------------ARILFLVPSISLLSQT 222 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-------------hheEeecchHHHHHHH
Confidence 34568999999999998875 3466779999999998754 3333332 3899999999999998
Q ss_pred HHHHHHhhcCCCCceEEEEECCcchHHH-----------------------HHH--hhCCCcEEEeCHHHHHHHHHhccc
Q 005837 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQ-----------------------LEN--LQEGVDVLIATPGRFMFLIKEGIL 416 (675)
Q Consensus 362 ~~~l~~l~~~~~~~~v~~l~gg~~~~~~-----------------------~~~--l~~~~~IlV~Tp~~L~~~l~~~~~ 416 (675)
.+.+..-.. .+++...++.+...... +.. ...+.-|+++|++.+...-+....
T Consensus 223 lrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 223 LREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 888776432 45666666655432211 111 123567999999999877776666
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCC-----CCccEEEEecCCCH---HHHHHHHHh---C--CCCeEEeCC
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSP-----VTAQYLFVTATLPV---EIYNKLVEV---F--PDCKVVMGP 483 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-----~~~qiI~lSAT~~~---~v~~~l~~~---~--~~~~~i~~~ 483 (675)
-+..+++||.||||+..+.+ ....-..-+..+. +..+.+.||||+.. ......... + .+...++.+
T Consensus 301 G~~~fDliicDEAHRTtGa~-~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGe 379 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGAT-LAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGE 379 (1518)
T ss_pred CCCCccEEEecchhccccce-ecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhch
Confidence 78899999999999876411 1000000011110 12244788998721 110000000 0 000011111
Q ss_pred CccccCC----------CceEEEEecCCC--C--------CCCCchhhhhhhHHHHHHHHHHhC---------------C
Q 005837 484 GMHRISP----------GLEEFLVDCSGD--Q--------ESDKTPETAFLNKKSALLQLIEKS---------------P 528 (675)
Q Consensus 484 ~~~~~~~----------~i~~~~~~~~~~--~--------~~~~~~~~~~~~k~~~l~~ll~~~---------------~ 528 (675)
.+++... .....++.+... . ............+..-...-+.+. +
T Consensus 380 ef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap 459 (1518)
T COG4889 380 EFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAP 459 (1518)
T ss_pred hhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchH
Confidence 1111100 011111111000 0 000000000001111112222111 1
Q ss_pred CCceEEEecchhhHHHHHHHHHH--------hcccCCCe--eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKR--------FDRKETRV--RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA 598 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~--------~~~~~~~~--~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~ 598 (675)
-.+.|-||.++++..++++.+.. +.....++ .+-...|.|...+|......-..=... .++||---..+
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n-eckIlSNaRcL 538 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN-ECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc-hheeeccchhh
Confidence 24679999999988887766543 21122333 445566889999994443322110111 34477777789
Q ss_pred cccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEE
Q 005837 599 SRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 599 ~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
+.|+|+|..+.||+|+.-.++-+.+|.+||+.|-+.++...|++
T Consensus 539 SEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYII 582 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYII 582 (1518)
T ss_pred hcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEE
Confidence 99999999999999999999999999999999932333334443
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=3.1e-15 Score=158.87 Aligned_cols=280 Identities=18% Similarity=0.226 Sum_probs=178.7
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcch
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~ 386 (675)
-++-+|||.||||-- +++++.+.+ ..++.-|.|-||.++++++.+.+. .+.+++|....
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~ak------------sGvycGPLrLLA~EV~~r~na~gi-----pCdL~TGeE~~ 251 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSAK------------SGVYCGPLRLLAHEVYDRLNALGI-----PCDLLTGEERR 251 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhhc------------cceecchHHHHHHHHHHHhhhcCC-----Cccccccceee
Confidence 355689999999964 567776643 679999999999999999998654 45666665443
Q ss_pred HHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCC-HH
Q 005837 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP-VE 465 (675)
Q Consensus 387 ~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~-~~ 465 (675)
...-. ...+..+=||-|+.. .-..+++.||||+++|.+...=+...+.++-.....+. +.+-+. ..
T Consensus 252 ~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGepsvld 318 (700)
T KOG0953|consen 252 FVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEPSVLD 318 (700)
T ss_pred ecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCchHHH
Confidence 22210 123556667766441 23458899999999998422222334444333322222 233221 12
Q ss_pred HHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHH
Q 005837 466 IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKV 545 (675)
Q Consensus 466 v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l 545 (675)
+...+.+..++...+. ..++..+. . -.+.+..-+.....+-+ |.|.|++++-.+
T Consensus 319 lV~~i~k~TGd~vev~--~YeRl~pL----~-------------------v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~ 372 (700)
T KOG0953|consen 319 LVRKILKMTGDDVEVR--EYERLSPL----V-------------------VEETALGSLSNLKPGDC-VVAFSKKDIFTV 372 (700)
T ss_pred HHHHHHhhcCCeeEEE--eecccCcc----e-------------------ehhhhhhhhccCCCCCe-EEEeehhhHHHH
Confidence 3333333332221111 11111110 0 01123333344444444 346678899999
Q ss_pred HHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhc--CCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC------
Q 005837 546 ENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT--SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR------ 617 (675)
Q Consensus 546 ~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~--g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~------ 617 (675)
...+++.+ +..+++++|+++++.|.+.-..|.+ ++.+ |||||++++||+|+ +++-||++++-+
T Consensus 373 k~kIE~~g----~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d----vlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~ 443 (700)
T KOG0953|consen 373 KKKIEKAG----NHKCAVIYGSLPPETRLAQAALFNDPSNECD----VLVASDAIGMGLNL-NIRRIIFYSLIKYSGRET 443 (700)
T ss_pred HHHHHHhc----CcceEEEecCCCCchhHHHHHHhCCCCCccc----eEEeeccccccccc-ceeEEEEeecccCCcccc
Confidence 99998765 2468999999999999999999988 5555 99999999999999 699999988643
Q ss_pred ---CHHHHHHHhcccccCCC--CccEEEEEEeCccHHHHHHHHH
Q 005837 618 ---DPSEYVRRVGRTARGAG--GTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 618 ---s~~~y~Qr~GRagR~~g--~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
+..+..|.+|||||.++ ..|.+.+| ..+|...++++++
T Consensus 444 ~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 444 EDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRILK 486 (700)
T ss_pred eeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHHh
Confidence 67889999999999322 35666655 4567777777765
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=1e-13 Score=165.81 Aligned_cols=134 Identities=18% Similarity=0.236 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc
Q 005837 519 ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA 598 (675)
Q Consensus 519 ~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~ 598 (675)
.+.+++.. ..+++|||++|.+..+.+++.|....... ++.+. .-+++...|.+++++|+++... ||++|..+
T Consensus 743 ~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~~-~~~ll--~Qg~~~~~r~~l~~~F~~~~~~----iLlG~~sF 814 (928)
T PRK08074 743 YIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEELE-GYVLL--AQGVSSGSRARLTKQFQQFDKA----ILLGTSSF 814 (928)
T ss_pred HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccccc-CceEE--ecCCCCCCHHHHHHHHHhcCCe----EEEecCcc
Confidence 34444433 35689999999999999999997643211 12222 2244445678899999987665 99999999
Q ss_pred cccCCCCCc--CEEEEcCCCC------------------------------CHHHHHHHhcccccCCCCccEEEEEEeC-
Q 005837 599 SRGIDFAGV--DHVVLFDFPR------------------------------DPSEYVRRVGRTARGAGGTGKAFIFVVG- 645 (675)
Q Consensus 599 ~~GiDip~v--~~VI~~d~p~------------------------------s~~~y~Qr~GRagR~~g~~g~~i~~~~~- 645 (675)
.+|||+|+- +.||...+|. -+..+.|.+||.-|.....|.++++-..
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~ 894 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRL 894 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcc
Confidence 999999984 7788876653 1233479999999954566655555333
Q ss_pred ccHHHHHHHHHHhcC
Q 005837 646 KQVSLAQRIMERNRK 660 (675)
Q Consensus 646 ~d~~~~~~l~~~~~~ 660 (675)
....|-+.|++.+..
T Consensus 895 ~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 895 TTTSYGKYFLESLPT 909 (928)
T ss_pred ccchHHHHHHHhCCC
Confidence 234455666666553
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=4.1e-14 Score=160.12 Aligned_cols=312 Identities=15% Similarity=0.182 Sum_probs=194.1
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
+|++.|.-.--.+..| -|..|.||-||||++.+|++-.... |..|-|++..--||..=+.++..+.
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~------------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT------------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc------------CCceEEEecchhhhhhhHHHHHHHH
Confidence 6778887777666666 4899999999999999988644332 3357777888889998888888877
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCcccccCCc------
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILFNDE------ 436 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l~~~~------ 436 (675)
.+ .++.+.+...+........ ...+||+++|..-|- ++++.. ......+.+.||||+|.++=|.
T Consensus 144 ~f-LGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 144 NF-LGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HH-hCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 65 6778887776655444333 335899999998764 455532 1234668899999999653110
Q ss_pred ---------cHHHHHHHHHhhCCC-------CccEEEEe-----------------------------------------
Q 005837 437 ---------DFEVALQSLISSSPV-------TAQYLFVT----------------------------------------- 459 (675)
Q Consensus 437 ---------~~~~~l~~il~~~~~-------~~qiI~lS----------------------------------------- 459 (675)
.+...+..+...+.. ..+.+.+|
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 111112222221111 11122222
Q ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Q 005837 460 --------------------------------------------------------------------ATLPVEIYNKLV 471 (675)
Q Consensus 460 --------------------------------------------------------------------AT~~~~v~~~l~ 471 (675)
+|...+-. .+.
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~-Ef~ 379 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ-EFI 379 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH-HHH
Confidence 22211111 111
Q ss_pred HhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC---chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHH
Q 005837 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK---TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVE 546 (675)
Q Consensus 472 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~ 546 (675)
..+ ++....++......... ........|..++.+.+.. ..+.|+||.|.|++..+.++
T Consensus 380 ~iY----------------~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls 443 (925)
T PRK12903 380 DIY----------------NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLH 443 (925)
T ss_pred HHh----------------CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 111 11111111110000000 0011122455555554432 35789999999999999999
Q ss_pred HHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC--------EEEEcCCCCC
Q 005837 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD--------HVVLFDFPRD 618 (675)
Q Consensus 547 ~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~--------~VI~~d~p~s 618 (675)
..|.+.+ +..-.+++.- .++...+-. ..|.. -.|.|||++++||.||.--. |||....+.|
T Consensus 444 ~~L~~~g-----i~h~vLNAk~--~e~EA~IIa-~AG~~---GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheS 512 (925)
T PRK12903 444 ELLLEAN-----IPHTVLNAKQ--NAREAEIIA-KAGQK---GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAES 512 (925)
T ss_pred HHHHHCC-----CCceeecccc--hhhHHHHHH-hCCCC---CeEEEecccccCCcCccCchhHHHcCCcEEEecccCch
Confidence 9999876 5556667752 233322222 44432 23999999999999995322 8999999999
Q ss_pred HHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 619 ~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
..--.|-.||+|| .|.+|.+-.|++-+|
T Consensus 513 rRIDnQLrGRaGR-QGDpGss~f~lSLeD 540 (925)
T PRK12903 513 RRIDNQLRGRSGR-QGDVGESRFFISLDD 540 (925)
T ss_pred HHHHHHHhccccc-CCCCCcceEEEecch
Confidence 9999999999999 799999999988776
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=9.6e-15 Score=134.11 Aligned_cols=144 Identities=34% Similarity=0.452 Sum_probs=109.8
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
+++++.++||+|||.+++..+.+.... ....+++|++|++.++.|+.+.+...... ...+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcc
Confidence 468999999999999988887776643 12458999999999999999988887653 466777777766
Q ss_pred hHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 386 ~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
............+|+++|++.+...+.........++++||||+|.+.. ..+...............+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN-QGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh-cchHHHHHHHHhhCCccceEEEEeccC
Confidence 6665555566799999999999887776555567799999999999983 333332222333345678999999996
No 143
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.61 E-value=1.5e-15 Score=164.10 Aligned_cols=126 Identities=16% Similarity=0.304 Sum_probs=101.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
++++|+|....+..+.+.++|...+ +..+.+.|.....+|..+.+.|+..+ .+.+|++|.+.+.||++..++
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~yr~-----Y~ylRLDGSsk~~dRrd~vrDwQ~sd---iFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVYRG-----YTYLRLDGSSKASDRRDVVRDWQASD---IFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHhhc-----cceEEecCcchhhHHHHHHhhccCCc---eEEEEEecccCcccccccccc
Confidence 4678888887777777777776654 78899999999999999999999854 578999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 609 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
.||+||..+++.--.|.+.||.| -|+.-.+.+|-.-..-...+++++++.+...
T Consensus 1116 TViFYdSDWNPT~D~QAMDRAHR-LGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~ 1169 (1185)
T KOG0388|consen 1116 TVIFYDSDWNPTADQQAMDRAHR-LGQTRDVTVYRLITRGTVEEKVLERANQKDE 1169 (1185)
T ss_pred eEEEecCCCCcchhhHHHHHHHh-ccCccceeeeeecccccHHHHHHHHhhhHHH
Confidence 99999999999999999999999 5665555444333333445666666655443
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.61 E-value=2.1e-15 Score=125.31 Aligned_cols=69 Identities=33% Similarity=0.696 Sum_probs=67.9
Q ss_pred eeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccccc
Q 005837 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 559 ~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 631 (675)
+.+..+||++++.+|..+++.|.++... |||||+++++|+|+|++++||+++.|+++..|.|++||++|
T Consensus 8 ~~~~~i~~~~~~~~r~~~~~~f~~~~~~----vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 8 IKVAIIHGDMSQKERQEILKKFNSGEIR----VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp SSEEEESTTSHHHHHHHHHHHHHTTSSS----EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CcEEEEECCCCHHHHHHHHHHhhccCce----EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 8899999999999999999999999988 99999999999999999999999999999999999999999
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.60 E-value=7.9e-13 Score=142.27 Aligned_cols=301 Identities=17% Similarity=0.218 Sum_probs=209.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCce----EEEEEC--------------CcchHHHHHHh-h----------
Q 005837 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFR----SMVVTG--------------GFRQKTQLENL-Q---------- 394 (675)
Q Consensus 344 ~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~----v~~l~g--------------g~~~~~~~~~l-~---------- 394 (675)
..|+||||+|+|..|.++++.+.++......+. ...-+| .......+..+ .
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 468999999999999999998888754210000 000011 00011111111 0
Q ss_pred --------------CCCcEEEeCHHHHHHHHHh------cccccccceEEEEcCcccccCCccHHHHHHHHHhhCCC---
Q 005837 395 --------------EGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV--- 451 (675)
Q Consensus 395 --------------~~~~IlV~Tp~~L~~~l~~------~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~--- 451 (675)
..+|||||+|=.|...+.. ....|+++.++|||.||.+. +..+..+..++..+..
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~--MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL--MQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH--HhhHHHHHHHHHHhccCCC
Confidence 2489999999999877763 33458999999999999997 5666777777665431
Q ss_pred ---------------------CccEEEEecCCCHHHHHHHHHhCCCCe--EEeC------CCccccCCCceEEEEecCCC
Q 005837 452 ---------------------TAQYLFVTATLPVEIYNKLVEVFPDCK--VVMG------PGMHRISPGLEEFLVDCSGD 502 (675)
Q Consensus 452 ---------------------~~qiI~lSAT~~~~v~~~l~~~~~~~~--~i~~------~~~~~~~~~i~~~~~~~~~~ 502 (675)
-+|+|++|+...+++...+...+.+.. +... .........+.+.+......
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 269999999999998877776543321 1111 11234556677777776544
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhc
Q 005837 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582 (675)
Q Consensus 503 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~ 582 (675)
............-....+..+.+....+.+|||++|.-+--++.+.|++.. +.++.+|...++.+-.++-..|..
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~-----~sF~~i~EYts~~~isRAR~~F~~ 348 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN-----ISFVQISEYTSNSDISRARSQFFH 348 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC-----CeEEEecccCCHHHHHHHHHHHHc
Confidence 332222222111222233333335566889999999999999999998644 889999999999999999999999
Q ss_pred CCCCCCceEEEEccccc--ccCCCCCcCEEEEcCCCCCHHHHHHHhcccccC-----CCCccEEEEEEeCccHHHHHHHH
Q 005837 583 SRSKEARLFLVCTDRAS--RGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG-----AGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 583 g~~~~~~~VLVaT~~~~--~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~-----~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
|+.+ ||+.|.-+. +-..+.++++||.|++|..+.-|...+.-.+.. ......|.++|+.-|.-.+++|.
T Consensus 349 G~~~----iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 349 GRKP----ILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CCce----EEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9988 999998766 678899999999999999999888777655552 12468999999999987777774
No 146
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.58 E-value=4.5e-14 Score=159.37 Aligned_cols=132 Identities=20% Similarity=0.343 Sum_probs=113.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
++++|||+...+..+.+...|..++ +.+..++|...-++|...+++|..... -+++|++|...+.|||+.+++
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHg-----ylY~RLDg~t~vEqRQaLmerFNaD~R--IfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHG-----YLYVRLDGNTSVEQRQALMERFNADRR--IFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcc-----eEEEEecCCccHHHHHHHHHHhcCCCc--eEEEEEeccCCccccccccCc
Confidence 4789999988877777777777665 788999999999999999999998764 378999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCC
Q 005837 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668 (675)
Q Consensus 609 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~ 668 (675)
.||+||..+++..-.|.-.|+.| .|+.-.+.+|-.-.+..+.++|+++..+...+.++-
T Consensus 1349 TVvFYDsDwNPtMDaQAQDrChR-IGqtRDVHIYRLISe~TIEeniLkkanqKr~L~eva 1407 (1958)
T KOG0391|consen 1349 TVVFYDSDWNPTMDAQAQDRCHR-IGQTRDVHIYRLISERTIEENILKKANQKRMLDEVA 1407 (1958)
T ss_pred eEEEecCCCCchhhhHHHHHHHh-hcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHh
Confidence 99999999999999999999999 788777777777778888888888876666666553
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=6.8e-13 Score=154.63 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC-CCCceEEE
Q 005837 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS-KEARLFLV 593 (675)
Q Consensus 515 ~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~-~~~~~VLV 593 (675)
.....+..++...++ +++||++|....+.+.+.|...... .....++..+ +...++.|..+.- . ++|
T Consensus 466 ~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~----~~v~~q~~~~---~~~~l~~f~~~~~~~----~lv 533 (654)
T COG1199 466 KLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERST----LPVLTQGEDE---REELLEKFKASGEGL----ILV 533 (654)
T ss_pred HHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCcc----ceeeecCCCc---HHHHHHHHHHhcCCe----EEE
Confidence 344556666666654 9999999999999999999874311 2344555543 4477788877654 4 999
Q ss_pred EcccccccCCCCCc--CEEEEcCCCC------------------------------CHHHHHHHhcccccCCCCccEEEE
Q 005837 594 CTDRASRGIDFAGV--DHVVLFDFPR------------------------------DPSEYVRRVGRTARGAGGTGKAFI 641 (675)
Q Consensus 594 aT~~~~~GiDip~v--~~VI~~d~p~------------------------------s~~~y~Qr~GRagR~~g~~g~~i~ 641 (675)
+|..+.+|||+|+- +.||...+|. -+..+.|.+||+-|..+..|.+++
T Consensus 534 ~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 534 GGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred eeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 99999999999884 7788877664 244568999999996567777776
Q ss_pred EEeCccH
Q 005837 642 FVVGKQV 648 (675)
Q Consensus 642 ~~~~~d~ 648 (675)
+=..-..
T Consensus 614 lD~R~~~ 620 (654)
T COG1199 614 LDKRYAT 620 (654)
T ss_pred ecccchh
Confidence 6443333
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.57 E-value=3.8e-13 Score=153.32 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.|+ +|++.|.-+.-.+. +.-|+.|.||.|||+++.+|++-... .|..|-|++++..||.+-+.++
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL------------~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL------------TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh------------cCCceEEEeCCHHHHHHHHHHH
Confidence 344 46777776654444 45899999999999999999863332 2447899999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCcccc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDIL 432 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l 432 (675)
..+..+ .++.+.+..++.+....... ..+||+++|..-+- ++++.. ......+.+.||||+|.+
T Consensus 138 ~pvy~~-LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 138 GQIYRF-LGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHHHH-cCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 998776 67888888877666554333 35799999997653 344332 123456889999999965
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=1.8e-14 Score=139.73 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=102.1
Q ss_pred CChHHHHHHhhhhhc-------CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVE-------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~-------g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~ 362 (675)
+++++|.+++..+.. .+++++.+|||+|||.+++..+.+... +++|++|+..|+.|+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 478999999999884 588999999999999998765544331 7999999999999999
Q ss_pred HHHHHhhcCCCCceEE----------EEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-----------ccccccc
Q 005837 363 SNCRSLSKCGVPFRSM----------VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----------ILQLINL 421 (675)
Q Consensus 363 ~~l~~l~~~~~~~~v~----------~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-----------~~~l~~i 421 (675)
+.+..+.......... ...................+++++|...|....... ......+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997665421111000 001111111122233456889999999998665431 1234567
Q ss_pred eEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
++||+||||++..... ++.++. .....+|+||||+.
T Consensus 148 ~~vI~DEaH~~~~~~~----~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS----YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH----HHHHHH--SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH----HHHHHc--CCCCeEEEEEeCcc
Confidence 8999999999873221 444444 55778899999985
No 150
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3.2e-13 Score=142.77 Aligned_cols=356 Identities=16% Similarity=0.171 Sum_probs=228.5
Q ss_pred CCCCChHHHHHHhhhhhcCCCEEEEc-cCCCCc--hHHHHHHHHHHHHHHHhhccCCCC-------------------CC
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGK--TLAYLLPVIQRLRQEELQGLSKST-------------------SG 344 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dvii~a-pTGsGK--Tl~~llp~l~~l~~~~~~~~~~~~-------------------~~ 344 (675)
.-..+++.|.+.+..+.+.+|++..- ..+.|+ +-+|.+.+++|+.+.....+.+.. -.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34578999999999999999988632 223454 557899999998775544332221 13
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCC----c----eEEEEECC----------------------cchH-------
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVP----F----RSMVVTGG----------------------FRQK------- 387 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~----~----~v~~l~gg----------------------~~~~------- 387 (675)
.|+|||+||+|+.|..+.+.+..+...... + +...-+++ +...
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999999887321111 0 01111111 1000
Q ss_pred --HHHHHh--hCCCcEEEeCHHHHHHHHHh------cccccccceEEEEcCcccccCCccHHHHHHHHHhhCCC------
Q 005837 388 --TQLENL--QEGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV------ 451 (675)
Q Consensus 388 --~~~~~l--~~~~~IlV~Tp~~L~~~l~~------~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~------ 451 (675)
..++.. -...||+||+|-.|..++.+ ..-.++++.++|||-||.++ +..+..+..++..+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l--~QNwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML--MQNWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH--HhhHHHHHHHHHHhhcCccccc
Confidence 000011 13589999999999888873 23357889999999999998 4555666666555431
Q ss_pred ------------------CccEEEEecCCCHHHHHHHHHhCCCCe--EEe-----CCCccccCCCceEEEEecCCCCCCC
Q 005837 452 ------------------TAQYLFVTATLPVEIYNKLVEVFPDCK--VVM-----GPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 452 ------------------~~qiI~lSAT~~~~v~~~l~~~~~~~~--~i~-----~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
-.|++++|+--.+.....+.....+.. +.. ..........+.+.+........ .
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si-~ 529 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI-I 529 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc-c
Confidence 147777777665555444444432211 111 11112222223333322222211 1
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
..+...+..-...++--+.+.....+|||.++.-+--++.+++++.. +.+..+|...+..+-.++-+.|-.|..+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~-----i~F~~i~EYssk~~vsRAR~lF~qgr~~ 604 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE-----ISFVMINEYSSKSKVSRARELFFQGRKS 604 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh-----cchHHHhhhhhHhhhhHHHHHHHhcCce
Confidence 12222222222333333333445678999999999999999998865 6677788888888888899999999888
Q ss_pred CCceEEEEccccc--ccCCCCCcCEEEEcCCCCCHHHH---HHHhccccc---CCCCccEEEEEEeCccHHHHHHH
Q 005837 587 EARLFLVCTDRAS--RGIDFAGVDHVVLFDFPRDPSEY---VRRVGRTAR---GAGGTGKAFIFVVGKQVSLAQRI 654 (675)
Q Consensus 587 ~~~~VLVaT~~~~--~GiDip~v~~VI~~d~p~s~~~y---~Qr~GRagR---~~g~~g~~i~~~~~~d~~~~~~l 654 (675)
||+.|.-+. +-.++.+|+.||+|.+|..+.-| +.+++|+.- ..+....|.++|+.-|.-.+..+
T Consensus 605 ----vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 605 ----VLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred ----EEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999998765 78899999999999999988766 566666533 34456789999998886666555
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=1.6e-12 Score=148.64 Aligned_cols=288 Identities=12% Similarity=0.078 Sum_probs=167.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---H
Q 005837 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---L 390 (675)
Q Consensus 314 TGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~ 390 (675)
+|||||.+|+-.+-..+.. |..+||++|.+.|..|+.+.+++... ...+..++++.+..+. |
T Consensus 169 ~GSGKTevyl~~i~~~l~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA------------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc------------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHH
Confidence 5999999998777666643 45899999999999999999998653 1346777777665543 3
Q ss_pred HHh-hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC--CccHHHHHHHH--HhhCCCCccEEEEecCCCHH
Q 005837 391 ENL-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFEVALQSL--ISSSPVTAQYLFVTATLPVE 465 (675)
Q Consensus 391 ~~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~--~~~~~~~l~~i--l~~~~~~~qiI~lSAT~~~~ 465 (675)
... ....+|+|+|-..+ ...+.++.+|||||-|.-.- +.......+.+ +.....+.++|+.|||++.+
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 333 44589999997654 45788999999999985431 22222222222 22334578999999999988
Q ss_pred HHHHHHHhCCCCeEEeCC--CccccCCCceEEEEecCCC-CCCCCch--hhhhhhHHHHHHHHHHhCCCCceEEEecchh
Q 005837 466 IYNKLVEVFPDCKVVMGP--GMHRISPGLEEFLVDCSGD-QESDKTP--ETAFLNKKSALLQLIEKSPVSKTIVFCNKIV 540 (675)
Q Consensus 466 v~~~l~~~~~~~~~i~~~--~~~~~~~~i~~~~~~~~~~-~~~~~~~--~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~ 540 (675)
.+.....-. ...+... ......+.++ .++.... ...+... ..........+.+.++ .+ ++|||.|.+.
T Consensus 307 s~~~~~~g~--~~~~~~~~~~~~~~~P~v~--~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrG 379 (665)
T PRK14873 307 AQALVESGW--AHDLVAPRPVVRARAPRVR--ALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRG 379 (665)
T ss_pred HHHHHhcCc--ceeeccccccccCCCCeEE--EEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCC
Confidence 776543321 1101100 0111112221 2221110 0000000 0001112233333333 23 8888888765
Q ss_pred hH-----------------------------------------------------------HHHHHHHHHhcccCCCeeE
Q 005837 541 TC-----------------------------------------------------------RKVENILKRFDRKETRVRV 561 (675)
Q Consensus 541 ~~-----------------------------------------------------------~~l~~~L~~~~~~~~~~~v 561 (675)
.+ +++.+.|.++.+. ..+
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~---~~V 456 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPG---VPV 456 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCC---CCE
Confidence 43 4555555554432 334
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCC------C------CHHHHHHHhccc
Q 005837 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP------R------DPSEYVRRVGRT 629 (675)
Q Consensus 562 ~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~------s~~~y~Qr~GRa 629 (675)
..+.+ ..+++.|. ++.. |||+|..++.=+. +++..|+..|.. . ..+.+.|-+||+
T Consensus 457 ~r~d~-------d~~l~~~~-~~~~----IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagra 523 (665)
T PRK14873 457 VTSGG-------DQVVDTVD-AGPA----LVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALV 523 (665)
T ss_pred EEECh-------HHHHHhhc-cCCC----EEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhh
Confidence 43332 24677785 4666 9999983222121 356777665532 1 345568999999
Q ss_pred ccCCCCccEEEEEEeCcc
Q 005837 630 ARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 630 gR~~g~~g~~i~~~~~~d 647 (675)
|| .+..|.+++...++.
T Consensus 524 gr-~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 524 RP-RADGGQVVVVAESSL 540 (665)
T ss_pred cC-CCCCCEEEEEeCCCC
Confidence 99 688999998864443
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.46 E-value=7.7e-11 Score=137.00 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhc----CCCCCCceE
Q 005837 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT----SRSKEARLF 591 (675)
Q Consensus 516 k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~----g~~~~~~~V 591 (675)
....+..++. . .+.++||++|....+.++..|.... ... +..++. ..+..+++.|++ +... |
T Consensus 523 ~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~----~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~----V 588 (697)
T PRK11747 523 MAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL----RLM-LLVQGD---QPRQRLLEKHKKRVDEGEGS----V 588 (697)
T ss_pred HHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc----CCc-EEEeCC---chHHHHHHHHHHHhccCCCe----E
Confidence 3344555555 3 4458999999999999999987532 123 334554 246778877775 4444 9
Q ss_pred EEEcccccccCCCCC--cCEEEEcCCCC----C--------------------------HHHHHHHhcccccCCCCccEE
Q 005837 592 LVCTDRASRGIDFAG--VDHVVLFDFPR----D--------------------------PSEYVRRVGRTARGAGGTGKA 639 (675)
Q Consensus 592 LVaT~~~~~GiDip~--v~~VI~~d~p~----s--------------------------~~~y~Qr~GRagR~~g~~g~~ 639 (675)
|++|..+..|||+|+ ++.||...+|. + +..+.|.+||.-|.....|.+
T Consensus 589 L~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i 668 (697)
T PRK11747 589 LFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRV 668 (697)
T ss_pred EEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEE
Confidence 999999999999987 78899877663 1 123469999999954566655
Q ss_pred EEEEeC-ccHHHHHHHHHHhc
Q 005837 640 FIFVVG-KQVSLAQRIMERNR 659 (675)
Q Consensus 640 i~~~~~-~d~~~~~~l~~~~~ 659 (675)
+++=.. ....+-+.++..+.
T Consensus 669 ~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 669 TILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred EEEcccccchhHHHHHHHhCC
Confidence 544333 22345566666543
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=8.9e-12 Score=141.98 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=94.2
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|...--.+..| -|..|.||-||||++.+|++-.... |..|-|+++..-||..-++++..+.
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~------------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT------------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc------------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 5667776665555544 7999999999999999998754433 4478999999999999999998887
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHh------cccccccceEEEEcCcccc
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKE------GILQLINLRCAILDEVDIL 432 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~------~~~~l~~i~~IVIDEaH~l 432 (675)
.+ .++.+.+..++...... .....+||+++|+..|- ++++. .......+.+.||||+|.+
T Consensus 151 ~~-LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RF-LGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HH-hCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 76 67888888776655443 33457899999998772 33332 1234567889999999965
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.46 E-value=9.2e-12 Score=143.85 Aligned_cols=326 Identities=18% Similarity=0.133 Sum_probs=184.5
Q ss_pred CChHHHHHHhhhhhc----C----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVE----G----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~----g----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
.-+.||-+|+..+.+ . --+|--|.||+|||++=.- |++.+... ..+.+..|..-.|.|-.|.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~---------~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD---------KQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC---------CCCceEEEEccccceeccc
Confidence 446799999998764 1 1244468999999997433 22233221 3456888888888888887
Q ss_pred HHHHHHhhcCCCCceEEEEECCcchHHHH-------------------------------------------HHhhC---
Q 005837 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQL-------------------------------------------ENLQE--- 395 (675)
Q Consensus 362 ~~~l~~l~~~~~~~~v~~l~gg~~~~~~~-------------------------------------------~~l~~--- 395 (675)
-+.+++-...+ +-...++.|+....+-. ..+..
T Consensus 478 Gda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 478 GHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred hHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 77777643321 12234444443221110 00000
Q ss_pred -----CCcEEEeCHHHHHHHHHh---cccccc----cceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccEEEEecCC
Q 005837 396 -----GVDVLIATPGRFMFLIKE---GILQLI----NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATL 462 (675)
Q Consensus 396 -----~~~IlV~Tp~~L~~~l~~---~~~~l~----~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSAT~ 462 (675)
...|+|+|++.++..... +...+. .-+.|||||+|.+. ......+..++... ....++++||||+
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD--~~~~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE--PEDLPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC--HHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 257999999999866522 122211 13479999999885 22333344444422 2367899999999
Q ss_pred CHHHHHHHHHhC-----------CC--C-eEEeC---CCccccCC--------------------------Cce--EEEE
Q 005837 463 PVEIYNKLVEVF-----------PD--C-KVVMG---PGMHRISP--------------------------GLE--EFLV 497 (675)
Q Consensus 463 ~~~v~~~l~~~~-----------~~--~-~~i~~---~~~~~~~~--------------------------~i~--~~~~ 497 (675)
|+.+...+...+ .. . ..+.. ..+..... ... -..+
T Consensus 635 P~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~ 714 (1110)
T TIGR02562 635 PPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELL 714 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEe
Confidence 998877765543 10 0 00000 00000000 000 0011
Q ss_pred ecCCCCCCCC-chhhhhhhHHHHHHHHHHhCC------CCc---eEEEecchhhHHHHHHHHHHhcc-cCCCeeEEEecC
Q 005837 498 DCSGDQESDK-TPETAFLNKKSALLQLIEKSP------VSK---TIVFCNKIVTCRKVENILKRFDR-KETRVRVLPFHA 566 (675)
Q Consensus 498 ~~~~~~~~~~-~~~~~~~~k~~~l~~ll~~~~------~~k---~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~v~~lhg 566 (675)
.+........ ............+..++..+. +.+ .+|-.++++.+-.++..|-.... ....+.+++||+
T Consensus 715 ~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS 794 (1110)
T TIGR02562 715 SLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA 794 (1110)
T ss_pred ecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecc
Confidence 1111110000 011111222233344443321 122 47778888888888888866542 334578999999
Q ss_pred CCCHHHHHHHHHHH----------------------hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHH
Q 005837 567 ALDQETRLANMKEF----------------------TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624 (675)
Q Consensus 567 ~m~~~eR~~v~~~F----------------------~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Q 624 (675)
......|..+.+.. .++..++...|+|+|.+.+.|+|+ +.+.+| .-|.++...+|
T Consensus 795 r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ 871 (1110)
T TIGR02562 795 QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQ 871 (1110)
T ss_pred cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHH
Confidence 99888887766553 121111245699999999999998 566654 44567999999
Q ss_pred Hhccccc
Q 005837 625 RVGRTAR 631 (675)
Q Consensus 625 r~GRagR 631 (675)
++||+.|
T Consensus 872 ~aGR~~R 878 (1110)
T TIGR02562 872 LAGRVNR 878 (1110)
T ss_pred Hhhcccc
Confidence 9999999
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=7.5e-13 Score=110.28 Aligned_cols=79 Identities=38% Similarity=0.774 Sum_probs=72.7
Q ss_pred HHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHH
Q 005837 544 KVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623 (675)
Q Consensus 544 ~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~ 623 (675)
.+++.|+..+ +.+..+||+|++.+|..+++.|.++... |||+|+++++|+|+|.+++||.++.|.+...|.
T Consensus 2 ~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~----vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 2 ELAELLKELG-----IKVARLHGGLSQEEREEILEKFNNGKIK----VLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHHCC-----CeEEEEECCCCHHHHHHHHHHHHcCCCe----EEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 3556666543 7899999999999999999999999877 999999999999999999999999999999999
Q ss_pred HHhccccc
Q 005837 624 RRVGRTAR 631 (675)
Q Consensus 624 Qr~GRagR 631 (675)
|++||++|
T Consensus 73 Q~~gR~~R 80 (82)
T smart00490 73 QRIGRAGR 80 (82)
T ss_pred Hhhccccc
Confidence 99999999
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.41 E-value=5.7e-11 Score=124.80 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=92.2
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
.-+.|||..-....+.+.-.|.+.+ +.+..+.|+|++..|...++.|++.. + ...+|++-.+.+..+|+..+.
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaG-----fscVkL~GsMs~~ardatik~F~nd~-~-c~vfLvSLkAGGVALNLteAS 710 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAG-----FSCVKLVGSMSPAARDATIKYFKNDI-D-CRVFLVSLKAGGVALNLTEAS 710 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccC-----ceEEEeccCCChHHHHHHHHHhccCC-C-eEEEEEEeccCceEeeechhc
Confidence 4578999987777777777777765 88999999999999999999999874 2 344666668888999999999
Q ss_pred EEEEcCCCCCHHHHHHHhccccc-CCCCccEEEEEEeCcc
Q 005837 609 HVVLFDFPRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 609 ~VI~~d~p~s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~d 647 (675)
+|++.|+=+++.--.|...|..| +.-++-+++.|+-.+.
T Consensus 711 qVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 711 QVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred eeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999999999 2235777888877544
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=3.4e-10 Score=132.56 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~ 362 (675)
.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++.+.... +..+++++++.|..-..|..
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~---------~~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK---------PEVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc---------cccccEEEEcccchHHHHHH
Confidence 35567899988887755 578999999999999999999999877543 22358999999999899998
Q ss_pred HHHHHh
Q 005837 363 SNCRSL 368 (675)
Q Consensus 363 ~~l~~l 368 (675)
++++++
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 888885
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.32 E-value=1.3e-10 Score=126.93 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=81.1
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
..+++|...-......+...|.+.+ +....+||.....+|..+++.|...+-+ ....|+.=.+.+.|+|+-+.+
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g-----~~y~si~Gqv~vK~Rq~iv~~FN~~k~~-~rVmLlSLtAGGVGLNL~GaN 819 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGG-----HIYTSITGQVLVKDRQEIVDEFNQEKGG-ARVMLLSLTAGGVGLNLIGAN 819 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCC-----eeeeeecCccchhHHHHHHHHHHhccCC-ceEEEEEEccCcceeeecccc
Confidence 3455555544444444555555544 7888999999999999999999876642 333444557788999999999
Q ss_pred EEEEcCCCCCHHHHHHHhcccccCCCCccEEEEE
Q 005837 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 609 ~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
|+|..|+.|++.--.|...|.-| .|++-.++++
T Consensus 820 HlilvDlHWNPaLEqQAcDRIYR-~GQkK~V~Ih 852 (901)
T KOG4439|consen 820 HLILVDLHWNPALEQQACDRIYR-MGQKKDVFIH 852 (901)
T ss_pred eEEEEecccCHHHHHHHHHHHHH-hcccCceEEE
Confidence 99999999999999999999999 5666666544
No 159
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.8e-10 Score=132.67 Aligned_cols=122 Identities=17% Similarity=0.166 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.|..++.+-+.. ..+.|+||-+.|++..+.++..|...+ +..-.+++.....+-..|-+.=+.|. |-
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g-----I~H~VLNAK~h~~EAeIVA~AG~~Ga------VT 680 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK-----IPHNVLNAKLHQKEAEIVAEAGQPGT------VT 680 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC-----CcHHHhhccchhhHHHHHHhcCCCCc------EE
Confidence 455555555433 357899999999999999999999866 44444566543344444434434443 99
Q ss_pred EEcccccccCCCC--------CcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 593 VCTDRASRGIDFA--------GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 593 VaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
|||++++||.||. +==+||-...+.|..--.|-.||+|| .|.+|.+-.|++-+|.
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGR-QGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGR-QGDPGSSQFYVSLEDN 743 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhccccc-CCCCCcceEEEEcccH
Confidence 9999999999985 22478888899999999999999999 7999999999998773
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.24 E-value=4.8e-10 Score=135.22 Aligned_cols=134 Identities=20% Similarity=0.377 Sum_probs=106.3
Q ss_pred hHHHHHHHHH-H--hCCCC--ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 005837 515 NKKSALLQLI-E--KSPVS--KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589 (675)
Q Consensus 515 ~k~~~l~~ll-~--~~~~~--k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~ 589 (675)
.|...+.+++ . ...+. +++||++.......+...|+..+ +.+..++|.++..+|...++.|.++. +..
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~-----~~~~~ldG~~~~~~r~~~i~~f~~~~--~~~ 764 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG-----IKYVRLDGSTPAKRRQELIDRFNADE--EEK 764 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC-----CcEEEEeCCCChhhHHHHHHHhhcCC--CCc
Confidence 3455555555 2 22344 89999999998888888888765 67899999999999999999999973 245
Q ss_pred eEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 590 LFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 590 ~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
.+++.+.+++.|+|+-..++||+||..+++....|.+.||.| .|+...+.++-.-......++++.
T Consensus 765 v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~R-igQ~~~v~v~r~i~~~tiEe~i~~ 830 (866)
T COG0553 765 VFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHR-IGQKRPVKVYRLITRGTIEEKILE 830 (866)
T ss_pred eEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHH-hcCcceeEEEEeecCCcHHHHHHH
Confidence 688888999999999999999999999999999999999999 677777766655444444444433
No 161
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.23 E-value=6.4e-11 Score=131.96 Aligned_cols=348 Identities=17% Similarity=0.214 Sum_probs=208.3
Q ss_pred HHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 005837 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373 (675)
Q Consensus 294 iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~ 373 (675)
+-.+++.++..++.++|-+.||+|||..+.--+|..+.++.. ....-+.+..|++-.+.-+++++..--....
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~-------g~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN-------GASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc-------cccccceeccccccchHHHHHHHHHhhHHhh
Confidence 345555666677889999999999999988888888776532 2233567778888777766666544321100
Q ss_pred C--ceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCC
Q 005837 374 P--FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (675)
Q Consensus 374 ~--~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~ 451 (675)
. +-....+.+.... ..-.|+++|-+.+++.+... +..+.++|+||.|+.--+.+|...+..-+....+
T Consensus 455 g~tvgy~vRf~Sa~pr-------pyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 455 GETCGYNVRFDSATPR-------PYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred cccccccccccccccc-------cccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 0 0011111111111 12359999999999888873 4567899999999875455555544444444445
Q ss_pred CccEEEEecCCCHHHHHHHHHhCCCCe-------------------EEeCCCccccCCCceEEEEecCCCCCCC------
Q 005837 452 TAQYLFVTATLPVEIYNKLVEVFPDCK-------------------VVMGPGMHRISPGLEEFLVDCSGDQESD------ 506 (675)
Q Consensus 452 ~~qiI~lSAT~~~~v~~~l~~~~~~~~-------------------~i~~~~~~~~~~~i~~~~~~~~~~~~~~------ 506 (675)
...++++|||+..+.+..+....+... ....+.. .......+.....+...+
T Consensus 525 dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~---~~~~k~k~~~~~~~~~~ddK~~n~ 601 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSE---PSQKKRKKDDDEEDEEVDDKGRNM 601 (1282)
T ss_pred hhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCC---cCccchhhcccccCchhhhccccc
Confidence 666777777776554433332222110 0001100 000111111110000000
Q ss_pred ---Cchh---------------hhhhhHHHHHHHHHH-hCCCCceEEEecchhhHHHHHHHHHHhc--ccCCCeeEEEec
Q 005837 507 ---KTPE---------------TAFLNKKSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKRFD--RKETRVRVLPFH 565 (675)
Q Consensus 507 ---~~~~---------------~~~~~k~~~l~~ll~-~~~~~k~IVF~~s~~~~~~l~~~L~~~~--~~~~~~~v~~lh 565 (675)
.... .......+++...+. +.-.+-++||.+.-..+-.|..+|..+. .....+.++..|
T Consensus 602 n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~H 681 (1282)
T KOG0921|consen 602 NILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLH 681 (1282)
T ss_pred ccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccch
Confidence 0000 000011122222222 2235678999999888888888876532 123346788999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC------------------CHHHHHHHhc
Q 005837 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR------------------DPSEYVRRVG 627 (675)
Q Consensus 566 g~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~------------------s~~~y~Qr~G 627 (675)
+.+...++.++++....|..+ +|+.|.+++..+.+-++.+||+.+..+ |..+..||.|
T Consensus 682 sq~~~~eqrkvf~~~p~gv~k----ii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921|consen 682 SQLTSQEQRKVFEPVPEGVTK----IILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred hhcccHhhhhccCcccccccc----cccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcc
Confidence 999999999999999999888 999999999999998988888744321 5667799999
Q ss_pred ccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 628 RagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|+|| -++|.|+.+++.--...+..-.-....+.+++++
T Consensus 758 r~gr--vR~G~~f~lcs~arF~~l~~~~t~em~r~plhem 795 (1282)
T KOG0921|consen 758 RAGR--VRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEI 795 (1282)
T ss_pred cCce--ecccccccccHHHHHHHHHhcCcHhhhcCccHHH
Confidence 9999 4899999998765544444333333334444443
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.22 E-value=3.5e-10 Score=126.54 Aligned_cols=128 Identities=24% Similarity=0.390 Sum_probs=102.9
Q ss_pred HHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCC-----------------CeeEEEecCCCCHHHHHHH
Q 005837 516 KKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKET-----------------RVRVLPFHAALDQETRLAN 576 (675)
Q Consensus 516 k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~-----------------~~~v~~lhg~m~~~eR~~v 576 (675)
|+..|+++|+. .-+.+.|||..|......+..+|......+. +.....+.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44456666643 3468999999999998888888865432221 1347788999999999999
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
.+.|.+-...-...+||+|.+.+.|||+-+++-||+||..|++.--+|-+=|+-| .|+.--||+|-.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyR-fGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYR-FGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHh-hcCcCceeehhh
Confidence 9999876433244699999999999999999999999999999999999999999 788888877644
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.19 E-value=1.3e-09 Score=123.38 Aligned_cols=301 Identities=14% Similarity=0.176 Sum_probs=172.1
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
.-.+|.+|+|+|||.+..-++-+.+. ....++|+|+.+++|+.+...+++..+-. ++....-.++..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv~Y~d~~~~~ 116 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGLS--GFVNYLDSDDYI 116 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cceeeecccccc
Confidence 34688999999999875443332221 12458999999999999999998865321 221111111111
Q ss_pred hHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHH-------HHHHHHHhhCCCCccEEEE
Q 005837 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE-------VALQSLISSSPVTAQYLFV 458 (675)
Q Consensus 386 ~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~-------~~l~~il~~~~~~~qiI~l 458 (675)
.. ....+-+++..+.|.++.. ..+.++++|||||+-.++. +-|. ..+..+...+.....+|++
T Consensus 117 i~------~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~-qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~ 186 (824)
T PF02399_consen 117 ID------GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLN-QLFSPTMRQREEVDNLLKELIRNAKTVIVM 186 (824)
T ss_pred cc------ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHH-HHhHHHHhhHHHHHHHHHHHHHhCCeEEEe
Confidence 00 0134677777777754432 2466799999999976652 2121 2223233444556789999
Q ss_pred ecCCCHHHHHHHHHhCCCCeEEeCCCccccC--CCceEEEEec----------C-CCCCCCC-----------chhhhhh
Q 005837 459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRIS--PGLEEFLVDC----------S-GDQESDK-----------TPETAFL 514 (675)
Q Consensus 459 SAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~--~~i~~~~~~~----------~-~~~~~~~-----------~~~~~~~ 514 (675)
-|++.....+++....++..+.+....+... ..-.-.+... . .+..... .......
T Consensus 187 DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (824)
T PF02399_consen 187 DADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISN 266 (824)
T ss_pred cCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccccc
Confidence 9999999999998876654333222211110 0011111110 0 0000000 0000001
Q ss_pred hHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEE
Q 005837 515 NKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593 (675)
Q Consensus 515 ~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLV 593 (675)
....-.-.++.. ..+.++-||+.|...++.+++...... ..+..+++.-+..+ + +.|.+ .+ |++
T Consensus 267 ~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-----~~Vl~l~s~~~~~d---v-~~W~~--~~----Vvi 331 (824)
T PF02399_consen 267 DETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-----KKVLVLNSTDKLED---V-ESWKK--YD----VVI 331 (824)
T ss_pred chhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-----CeEEEEcCCCCccc---c-ccccc--ee----EEE
Confidence 111112222222 235678899999999888888887653 57888888655542 2 23432 33 999
Q ss_pred EcccccccCCCCCcCE--EEEc--CCC--CCHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 594 CTDRASRGIDFAGVDH--VVLF--DFP--RDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 594 aT~~~~~GiDip~v~~--VI~~--d~p--~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
-|.++..|+++....+ |+-| ... .++.+.+|++||+-.- .....++++...
T Consensus 332 YT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l--~~~ei~v~~d~~ 388 (824)
T PF02399_consen 332 YTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL--LDNEIYVYIDAS 388 (824)
T ss_pred EeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh--ccCeEEEEEecc
Confidence 9999999999854432 3323 222 3566789999998772 456677776643
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.13 E-value=2.5e-10 Score=103.77 Aligned_cols=136 Identities=23% Similarity=0.255 Sum_probs=80.2
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
|+-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++.. ++++....-+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-----------~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-----------RRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-----------ccCeEEEecccHHHHHHHHHHHhcC-----CcccCceeee-
Confidence 4556888999999999665544443332 2559999999999999988888653 2332211110
Q ss_pred chHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
. ....+.-|-++|...+.+.+.+ .....++++||+||+|.... ..-++..+..+ ... ....+|++|||+|
T Consensus 67 --~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 67 --R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPP 137 (148)
T ss_dssp ----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-T
T ss_pred --c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCC
Confidence 0 1123456889999998887766 45578999999999998741 01122223332 222 2467999999998
Q ss_pred HHH
Q 005837 464 VEI 466 (675)
Q Consensus 464 ~~v 466 (675)
-..
T Consensus 138 G~~ 140 (148)
T PF07652_consen 138 GSE 140 (148)
T ss_dssp T--
T ss_pred CCC
Confidence 553
No 165
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.13 E-value=1.6e-11 Score=139.23 Aligned_cols=290 Identities=17% Similarity=0.236 Sum_probs=179.9
Q ss_pred ccCCCCCCCcccccccCCCCCCCcccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc-CCCEE
Q 005837 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCI 309 (675)
Q Consensus 231 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~-g~dvi 309 (675)
.++.|........++++..+.+... +..+.+....+.....|.....+.+.+ .+.++|.+.+..+.. ..+++
T Consensus 875 ~s~~~l~~e~~~~~s~~~~il~~~~---~~~t~ll~l~plp~~~L~~~~~e~~~~----~fn~~q~~if~~~y~td~~~~ 947 (1230)
T KOG0952|consen 875 VSDNWLGAETVYPLSFQHLILPDNE---PPLTELLDLRPLPSSALKNVVFEALYK----YFNPIQTQIFHCLYHTDLNFL 947 (1230)
T ss_pred ecccccCCceeccccccceeccccc---cccccccccCCCcchhhccccHHHhhc----ccCCccceEEEEEeecchhhh
Confidence 3466777777777777777776554 334444444444444444444444443 566789988887665 57899
Q ss_pred EEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH
Q 005837 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389 (675)
Q Consensus 310 i~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~ 389 (675)
+.+|||+|||++|.+.++..+.. ..+.++++|+|..+|+..-.+.+.+.... .++++..+.|+......
T Consensus 948 ~g~ptgsgkt~~ae~a~~~~~~~----------~p~~kvvyIap~kalvker~~Dw~~r~~~-~g~k~ie~tgd~~pd~~ 1016 (1230)
T KOG0952|consen 948 LGAPTGSGKTVVAELAIFRALSY----------YPGSKVVYIAPDKALVKERSDDWSKRDEL-PGIKVIELTGDVTPDVK 1016 (1230)
T ss_pred hcCCccCcchhHHHHHHHHHhcc----------CCCccEEEEcCCchhhcccccchhhhccc-CCceeEeccCccCCChh
Confidence 99999999999999988876655 33579999999999999988888776544 37888899988776632
Q ss_pred HHHhhCCCcEEEeCHHHHHHHHH--hcccccccceEEEEcCcccccCCccHHHHHHHH-------HhhCCCCccEEEEec
Q 005837 390 LENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSL-------ISSSPVTAQYLFVTA 460 (675)
Q Consensus 390 ~~~l~~~~~IlV~Tp~~L~~~l~--~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i-------l~~~~~~~qiI~lSA 460 (675)
- ....+|+|+||+++....+ +....+++++++|+||.|++.. +..+.+..+ -.+.....+++++|.
T Consensus 1017 ~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~--~rgPVle~ivsr~n~~s~~t~~~vr~~glst 1091 (1230)
T KOG0952|consen 1017 A---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE--DRGPVLEVIVSRMNYISSQTEEPVRYLGLST 1091 (1230)
T ss_pred h---eecCceEEcccccccCccccccchhhhccccceeecccccccC--CCcceEEEEeeccccCccccCcchhhhhHhh
Confidence 1 2247999999999987777 4566789999999999999963 333332222 223344567777664
Q ss_pred CCCHHHHHHHHHhCCCCeEEeCCCcccc--CCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecc
Q 005837 461 TLPVEIYNKLVEVFPDCKVVMGPGMHRI--SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538 (675)
Q Consensus 461 T~~~~v~~~l~~~~~~~~~i~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s 538 (675)
-+.. ..++..++..... .++... +..++..+-..++ . .............+..+....+..++|||+.+
T Consensus 1092 a~~n--a~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~-~---~~cprm~smnkpa~qaik~~sp~~p~lifv~s 1162 (1230)
T KOG0952|consen 1092 ALAN--ANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG-Q---HYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSS 1162 (1230)
T ss_pred hhhc--cHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc-h---hcchhhhhcccHHHHHHhcCCCCCceEEEeec
Confidence 3321 1233334321111 111100 0111111111111 0 00111111122344445555678899999999
Q ss_pred hhhHHHHHHHHHHh
Q 005837 539 IVTCRKVENILKRF 552 (675)
Q Consensus 539 ~~~~~~l~~~L~~~ 552 (675)
+.+....+..|-..
T Consensus 1163 rrqtrlta~~li~~ 1176 (1230)
T KOG0952|consen 1163 RRQTRLTALDLIAS 1176 (1230)
T ss_pred ccccccchHhHHhh
Confidence 99877666666543
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.00 E-value=1.9e-09 Score=113.11 Aligned_cols=158 Identities=22% Similarity=0.193 Sum_probs=91.0
Q ss_pred HHHHHhhhhh-------------cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 294 IQAMAFPPVV-------------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 294 iQ~~~i~~il-------------~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
+|.+++.+++ ..+.+|++..+|+|||+..+..+. .+.... .......+||+||. .+..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~ 72 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQ 72 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhh
Confidence 4777776653 235789999999999998655443 333321 00111259999999 78899
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHH---hcccccccceEEEEcCcccccCCcc
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK---EGILQLINLRCAILDEVDILFNDED 437 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~---~~~~~l~~i~~IVIDEaH~l~~~~~ 437 (675)
|..++.++... ..+++....|...............+++|+|++.+..... ...+....+++||+||+|.+-+.
T Consensus 73 W~~E~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~-- 149 (299)
T PF00176_consen 73 WKEEIEKWFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK-- 149 (299)
T ss_dssp HHHHHHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--
T ss_pred hhhhhcccccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--
Confidence 99999998742 2456666666552222222334468999999999971100 01122234999999999999521
Q ss_pred HHHHHHHHHhhCCCCccEEEEecCCCH
Q 005837 438 FEVALQSLISSSPVTAQYLFVTATLPV 464 (675)
Q Consensus 438 ~~~~l~~il~~~~~~~qiI~lSAT~~~ 464 (675)
.....+.+.. +. ....+++|||+..
T Consensus 150 ~s~~~~~l~~-l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 150 DSKRYKALRK-LR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp TSHHHHHHHC-CC-ECEEEEE-SS-SS
T ss_pred cccccccccc-cc-cceEEeecccccc
Confidence 1222333333 43 6677889999844
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.96 E-value=7e-08 Score=115.50 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=91.4
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
+..+|+=-||||||++....+- .+.+. ...|.++||+-++.|-.|..+.+..++..... .. ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~--~~---~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN--DP---KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh--cc---cccC
Confidence 4699999999999998654433 33332 45789999999999999999999998763111 11 2333
Q ss_pred hHHHHHHhhCC-CcEEEeCHHHHHHHHHhc--ccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 386 QKTQLENLQEG-VDVLIATPGRFMFLIKEG--ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 386 ~~~~~~~l~~~-~~IlV~Tp~~L~~~l~~~--~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
...-.+.+... ..|+|+|.++|....... ...-.+-=+||+||||+-- .+... ..++...++...++||+|+
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~---~~~~~~~~~a~~~gFTGTP 413 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELA---KLLKKALKKAIFIGFTGTP 413 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHH---HHHHHHhccceEEEeeCCc
Confidence 33334445533 489999999998776553 1112223379999999875 23222 2223333457889999998
Q ss_pred C
Q 005837 463 P 463 (675)
Q Consensus 463 ~ 463 (675)
-
T Consensus 414 i 414 (962)
T COG0610 414 I 414 (962)
T ss_pred c
Confidence 3
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.89 E-value=2.2e-08 Score=104.51 Aligned_cols=73 Identities=27% Similarity=0.317 Sum_probs=56.9
Q ss_pred CChHHHHHHhhh----hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~----il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++.|.+.+.. +..+.++++.+|||+|||++|++|++.++...... ..+.+++|.++|.++..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHHHHHH
Confidence 358999995555 44688999999999999999999999887653210 02348999999999988887777
Q ss_pred HHh
Q 005837 366 RSL 368 (675)
Q Consensus 366 ~~l 368 (675)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.89 E-value=2.2e-08 Score=104.51 Aligned_cols=73 Identities=27% Similarity=0.317 Sum_probs=56.9
Q ss_pred CChHHHHHHhhh----hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~----il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++.|.+.+.. +..+.++++.+|||+|||++|++|++.++...... ..+.+++|.++|.++..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHHHHHH
Confidence 358999995555 44688999999999999999999999887653210 02348999999999988887777
Q ss_pred HHh
Q 005837 366 RSL 368 (675)
Q Consensus 366 ~~l 368 (675)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.72 E-value=1.7e-07 Score=107.14 Aligned_cols=328 Identities=15% Similarity=0.143 Sum_probs=183.7
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~ 372 (675)
++-.|.+-.+.-...-|.-|-||-||||++.+|+.-... .|..+.+++-.--||.--..+...+..+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------------~gkgVhvVTvNdYLA~RDae~m~~l~~~- 147 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------------AGKGVHVVTVNDYLARRDAEWMGPLYEF- 147 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------------CCCCcEEeeehHHhhhhCHHHHHHHHHH-
Confidence 333445555555566899999999999999998763322 2335777777788888888888887776
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHh------cccccccceEEEEcCcccccC----------C
Q 005837 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKE------GILQLINLRCAILDEVDILFN----------D 435 (675)
Q Consensus 373 ~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~------~~~~l~~i~~IVIDEaH~l~~----------~ 435 (675)
.++.+.+...+......... ..+||.++|-..|- +.++. .......+.+.|+||+|.++= +
T Consensus 148 LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred cCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 67888888877765544333 35799999987662 22221 122344678899999985421 1
Q ss_pred ---c--cHHHHHHHHHhhCC------------------------------------------------------------
Q 005837 436 ---E--DFEVALQSLISSSP------------------------------------------------------------ 450 (675)
Q Consensus 436 ---~--~~~~~l~~il~~~~------------------------------------------------------------ 450 (675)
. .+...+..+...+.
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 0 11222222211100
Q ss_pred ---CCccEEEEecC--------------------------------CCHHHHHHHHHhCCCCeEEe-----CCCccccCC
Q 005837 451 ---VTAQYLFVTAT--------------------------------LPVEIYNKLVEVFPDCKVVM-----GPGMHRISP 490 (675)
Q Consensus 451 ---~~~qiI~lSAT--------------------------------~~~~v~~~l~~~~~~~~~i~-----~~~~~~~~~ 490 (675)
.+-.++++-+- +..-.++.+.++++...-.. ........+
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 00111111110 00111112222221111100 011111122
Q ss_pred CceEEEEecCCCCCCC---CchhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEec
Q 005837 491 GLEEFLVDCSGDQESD---KTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565 (675)
Q Consensus 491 ~i~~~~~~~~~~~~~~---~~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lh 565 (675)
++....+.....-... .........|..+++..+.. ..++|+||-+.+++..+.+.+.|.+.+ +....+.
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~-----i~h~VLN 460 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG-----IPHNVLN 460 (822)
T ss_pred CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC-----CCceeec
Confidence 2222222221111000 01112223466666655543 347899999999999999999999876 4444445
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC-----------EEEEcCCCCCHHHHHHHhcccccCCC
Q 005837 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD-----------HVVLFDFPRDPSEYVRRVGRTARGAG 634 (675)
Q Consensus 566 g~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~-----------~VI~~d~p~s~~~y~Qr~GRagR~~g 634 (675)
+.-...+-..+...-+.|. |-|||+++++|-||.--. +||-..-..|..---|-.||+|| .|
T Consensus 461 Ak~h~~EA~Iia~AG~~ga------VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGR-QG 533 (822)
T COG0653 461 AKNHAREAEIIAQAGQPGA------VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGR-QG 533 (822)
T ss_pred cccHHHHHHHHhhcCCCCc------cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhccccc-CC
Confidence 5433333333443334333 999999999999983222 34444444566666799999999 68
Q ss_pred CccEEEEEEeCcc
Q 005837 635 GTGKAFIFVVGKQ 647 (675)
Q Consensus 635 ~~g~~i~~~~~~d 647 (675)
.+|..-.|++-+|
T Consensus 534 DpG~S~F~lSleD 546 (822)
T COG0653 534 DPGSSRFYLSLED 546 (822)
T ss_pred CcchhhhhhhhHH
Confidence 9999887776544
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.64 E-value=4.6e-07 Score=92.47 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=94.0
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..|++.|..+.-.+..|+ |+.+.||-|||++..+|++-.... |..|-|++.+..||..-++++..+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------------cCCcEEEeccHHHhhccHHHHHHH
Confidence 468899988887776664 999999999999988877655432 557889999999999999999998
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCccccc
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILF 433 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l~ 433 (675)
... .++.+....++.......... .++|+++|...+. +.++.. ......+.++||||+|.++
T Consensus 142 y~~-LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEF-LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHH-TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHH-hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 875 788999999887755433333 3689999999886 455542 1124678899999999775
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.45 E-value=2e-05 Score=87.71 Aligned_cols=130 Identities=22% Similarity=0.353 Sum_probs=104.1
Q ss_pred CceEEEecchhhHHHHHHHHHHhcccCC-------------CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc
Q 005837 530 SKTIVFCNKIVTCRKVENILKRFDRKET-------------RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596 (675)
Q Consensus 530 ~k~IVF~~s~~~~~~l~~~L~~~~~~~~-------------~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~ 596 (675)
.++|||..+......+.+.|.+...... ....+.+.|..+..+|.+.+.+|.+...- .-.++++|.
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~l-sWlfllstr 798 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGL-SWLFLLSTR 798 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCc-eeeeeehhc
Confidence 4789999988888888888866432111 13456778999999999999999875422 225899999
Q ss_pred cccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCC
Q 005837 597 RASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661 (675)
Q Consensus 597 ~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~ 661 (675)
+...||++=..+-+|.||..+++.--.|.+-|+-| .|+.-.||+|-.--|..+.++|..+-...
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyr-YGQ~KpcfvYRlVmD~~lEkkIydRQIsK 862 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYR-YGQQKPCFVYRLVMDNSLEKKIYDRQISK 862 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhh-hcCcCceeEEeehhhhhhHHHHHHHHHhh
Confidence 99999999888889999999999888999999999 78999999998888888888887755443
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.36 E-value=3.8e-06 Score=98.42 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=54.8
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccccc-CCCCcc--------EEEEEEeCccHHHHHHHHHHh
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR-GAGGTG--------KAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR-~~g~~g--------~~i~~~~~~d~~~~~~l~~~~ 658 (675)
..++|++-.++..|.|.|+|-.+.-+.-..|...-.|.+||.-| .-.+.| .-.+++.....+++..|....
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 56699999999999999999888888888889999999999998 222222 122344556677888887654
Q ss_pred c
Q 005837 659 R 659 (675)
Q Consensus 659 ~ 659 (675)
.
T Consensus 581 ~ 581 (986)
T PRK15483 581 N 581 (986)
T ss_pred H
Confidence 4
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.21 E-value=1e-05 Score=94.67 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=52.5
Q ss_pred CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 395 ~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
....|+++||..|..-+-.+.+.+..+..|||||||++.+ ......+.++++...+..-+.+|||.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCC
Confidence 3467999999999866666788999999999999999984 444455556666666677788888886
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.20 E-value=5.5e-06 Score=81.28 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=74.3
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH---HHH
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL---SNC 365 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~---~~l 365 (675)
...+..|..++.++++..-+++.||.|+|||+.++..+++.+.+.. .-+++|+-|..+..+++- -.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~----------~~kiii~Rp~v~~~~~lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE----------YDKIIITRPPVEAGEDLGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----------SEEEEEE-S--TT----SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC----------CcEEEEEecCCCCccccccCCCCH
Confidence 3457889999999998888999999999999999999998887643 338888888765422110 000
Q ss_pred -HHhhcCCCCce--EEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHH
Q 005837 366 -RSLSKCGVPFR--SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 366 -~~l~~~~~~~~--v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
.++..+..++. ...+.+. .....+.....|-+..+..+ ++. .+. -.+||||||+.+. ...+
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~----~~~~~~~~~~~Ie~~~~~~i-----RGr-t~~-~~~iIvDEaQN~t-----~~~~ 136 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGK----EKLEELIQNGKIEIEPLAFI-----RGR-TFD-NAFIIVDEAQNLT-----PEEL 136 (205)
T ss_dssp -----TTTHHHHHHHTTTS-T----TCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCh----HhHHHHhhcCeEEEEehhhh-----cCc-ccc-ceEEEEecccCCC-----HHHH
Confidence 00000000000 0000000 01111112234444444322 111 122 3799999999886 5788
Q ss_pred HHHHhhCCCCccEEEEecC
Q 005837 443 QSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 443 ~~il~~~~~~~qiI~lSAT 461 (675)
+.++.+...+.+++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 8999999988998877643
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.18 E-value=0.00022 Score=81.10 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=56.0
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccccc-CCCCccEE-----------EEEEeCccHHHHHHHH
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR-GAGGTGKA-----------FIFVVGKQVSLAQRIM 655 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR-~~g~~g~~-----------i~~~~~~d~~~~~~l~ 655 (675)
..++|++--++-.|.|-|+|=.+.-.....|..+=+|.+||.-| +-...|.- .+++...+..+++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999 33344433 3456677788887775
Q ss_pred HH
Q 005837 656 ER 657 (675)
Q Consensus 656 ~~ 657 (675)
..
T Consensus 563 kE 564 (985)
T COG3587 563 KE 564 (985)
T ss_pred HH
Confidence 53
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.01 E-value=2.4e-05 Score=77.02 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=70.8
Q ss_pred ChHHHHHHhhhhhcCC--CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 291 PSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~--dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
+++-|.+++..++... -++++|+.|+|||.+. -.+...+... +.++++++||...+..+.+...
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~-----------g~~v~~~apT~~Aa~~L~~~~~-- 67 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA-----------GKRVIGLAPTNKAAKELREKTG-- 67 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT-----------T--EEEEESSHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC-----------CCeEEEECCcHHHHHHHHHhhC--
Confidence 6788999999997543 4777899999999853 3344444432 4589999999988886554421
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc----cccccceEEEEcCcccccCCccHHHHHHH
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI----LQLINLRCAILDEVDILFNDEDFEVALQS 444 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~----~~l~~i~~IVIDEaH~l~~~~~~~~~l~~ 444 (675)
+ -..|-..++....... ..+...++|||||+-++. ...+..
T Consensus 68 ------~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~-----~~~~~~ 112 (196)
T PF13604_consen 68 ------I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD-----SRQLAR 112 (196)
T ss_dssp ------S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B-----HHHHHH
T ss_pred ------c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC-----HHHHHH
Confidence 0 0122222211111100 115566799999998886 355666
Q ss_pred HHhhCCC-CccEEEEecC
Q 005837 445 LISSSPV-TAQYLFVTAT 461 (675)
Q Consensus 445 il~~~~~-~~qiI~lSAT 461 (675)
++..... ..++|++--+
T Consensus 113 ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp HHHHS-T-T-EEEEEE-T
T ss_pred HHHHHHhcCCEEEEECCc
Confidence 6666655 6677776644
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.98 E-value=2.1e-05 Score=75.37 Aligned_cols=112 Identities=25% Similarity=0.399 Sum_probs=72.3
Q ss_pred HHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc--cc
Q 005837 521 LQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD--RA 598 (675)
Q Consensus 521 ~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~--~~ 598 (675)
.++++..+ +.+|||++|....+.+.+.++...... ++.+. .. ...++..+++.|+++... ||+|+. .+
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~v~--~q--~~~~~~~~l~~~~~~~~~----il~~v~~g~~ 71 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEK-GIPVF--VQ--GSKSRDELLEEFKRGEGA----ILLAVAGGSF 71 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-E-TSCEE--ES--TCCHHHHHHHHHCCSSSE----EEEEETTSCC
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccc-cceee--ec--CcchHHHHHHHHHhccCe----EEEEEecccE
Confidence 34455544 799999999999999999887654211 12232 22 356788999999998766 999998 99
Q ss_pred cccCCCCC--cCEEEEcCCCC----C--------------------------HHHHHHHhcccccCCCCccEEEEE
Q 005837 599 SRGIDFAG--VDHVVLFDFPR----D--------------------------PSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 599 ~~GiDip~--v~~VI~~d~p~----s--------------------------~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
..|||+|+ ++.||...+|. + +....|.+||+-|.....|.++++
T Consensus 72 ~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 72 SEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp GSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred EEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 99999997 77899988874 1 112369999999943444444433
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.88 E-value=0.00016 Score=74.26 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=98.1
Q ss_pred ChHHHHHHhhhhhc----------CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 291 PSQIQAMAFPPVVE----------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 291 ~~~iQ~~~i~~il~----------g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
++..|.+++-.... +.-.++...||.||-....--++..+... ..+.|+++.+-.|-.+
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-----------r~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-----------RKRAVWVSVSNDLKYD 106 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-----------CCceEEEECChhhhhH
Confidence 45667666644331 24567777999999886655566665542 3379999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc---ccc---------cccceEEEEcC
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG---ILQ---------LINLRCAILDE 428 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~---~~~---------l~~i~~IVIDE 428 (675)
..+.++.++... +.+..+..-... . ...-.-.|+++|+..|....... ... -..=.+||+||
T Consensus 107 a~RDl~DIG~~~--i~v~~l~~~~~~-~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDE 180 (303)
T PF13872_consen 107 AERDLRDIGADN--IPVHPLNKFKYG-D---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDE 180 (303)
T ss_pred HHHHHHHhCCCc--ccceechhhccC-c---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEecc
Confidence 999999987642 222222211100 0 01123469999999887654321 111 11234899999
Q ss_pred cccccCCcc-------HHHHHHHHHhhCCCCccEEEEecCCCHHH
Q 005837 429 VDILFNDED-------FEVALQSLISSSPVTAQYLFVTATLPVEI 466 (675)
Q Consensus 429 aH~l~~~~~-------~~~~l~~il~~~~~~~qiI~lSAT~~~~v 466 (675)
+|...+... ....+..+...++ +.+++.+|||-..+.
T Consensus 181 cH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 181 CHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred chhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 999875211 2234455555564 677999999986543
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.82 E-value=0.00036 Score=70.58 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH------
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ------ 360 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q------ 360 (675)
++...+..|...+.++.++..+++.|++|+|||+.+...+++.+.... -.+++|.-|..+..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----------~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----------VDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----------eeEEEEeCCCCCchhhhCcCCC
Confidence 344567889999999998888999999999999988777776664422 2266666676543221
Q ss_pred -----HHHHHHHhhcCCCCceEEEEECCcchHHHHHHh-h-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 361 -----VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 361 -----~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l-~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
+.-+++-+... + ..+.+. .....+ . ..-.|-|.....+ +... + .-++||||||+.+.
T Consensus 126 ~~~eK~~p~~~pi~D~---L--~~~~~~----~~~~~~~~~~~~~Iei~~l~ym----RGrt--l-~~~~vIvDEaqn~~ 189 (262)
T PRK10536 126 DIAEKFAPYFRPVYDV---L--VRRLGA----SFMQYCLRPEIGKVEIAPFAYM----RGRT--F-ENAVVILDEAQNVT 189 (262)
T ss_pred CHHHHHHHHHHHHHHH---H--HHHhCh----HHHHHHHHhccCcEEEecHHHh----cCCc--c-cCCEEEEechhcCC
Confidence 11111111110 0 000111 111111 0 1223444444322 2212 2 23689999999886
Q ss_pred CCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 434 NDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 434 ~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++.++.....+.++|++.
T Consensus 190 -----~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 -----AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred -----HHHHHHHHhhcCCCCEEEEeC
Confidence 377888888888888877654
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.70 E-value=0.00012 Score=80.63 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred HCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 285 ~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
..++.+++.-|..|+.+++...-.||+||.|+|||.+..--+++.+.. ..+.+||++|+-..+.|++..
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----------cCCceEEEcccchhHHHHHHH
Confidence 346678899999999999999999999999999999865544444433 356899999999999999888
Q ss_pred HHHh
Q 005837 365 CRSL 368 (675)
Q Consensus 365 l~~l 368 (675)
+.+.
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 8774
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.54 E-value=0.00025 Score=78.03 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=53.5
Q ss_pred CChHHHHHHhhhhhcCCC-EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~d-vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
.+.+-|.+|+...++.++ .+|.||+|+|||.+....+.+.+.. +.++||++||.+.+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------------CCeEEEEcCchHHHHHHHHHhc
Confidence 456779999999888754 6779999999999887777777655 3499999999999999888644
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.48 E-value=0.0016 Score=64.65 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=81.4
Q ss_pred CChHHHHHHhhhhhc---CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~---g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
-+++.|.++...+.+ +.|.+.++-+|.|||.+ ++|++..+... +...+.+++|. +|..|....++
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd----------g~~LvrviVpk-~Ll~q~~~~L~ 90 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD----------GSRLVRVIVPK-ALLEQMRQMLR 90 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC----------CCcEEEEEcCH-HHHHHHHHHHH
Confidence 578999999988886 57999999999999997 46777665542 23366677774 58888888876
Q ss_pred HhhcC--CCCceEEEEECCcchHH-H---H----HHhhCCCcEEEeCHHHHHHHHHh-------cc-----------ccc
Q 005837 367 SLSKC--GVPFRSMVVTGGFRQKT-Q---L----ENLQEGVDVLIATPGRFMFLIKE-------GI-----------LQL 418 (675)
Q Consensus 367 ~l~~~--~~~~~v~~l~gg~~~~~-~---~----~~l~~~~~IlV~Tp~~L~~~l~~-------~~-----------~~l 418 (675)
.-... +..+...-+........ . . ......-.|+++||+.++.+.-. .. .-+
T Consensus 91 ~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l 170 (229)
T PF12340_consen 91 SRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWL 170 (229)
T ss_pred HHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 63221 11222222333322211 1 1 12234567999999998643211 00 012
Q ss_pred ccceEEEEcCccccc
Q 005837 419 INLRCAILDEVDILF 433 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~ 433 (675)
.....=|+||+|.++
T Consensus 171 ~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 171 DEHSRDILDESDEIL 185 (229)
T ss_pred HhcCCeEeECchhcc
Confidence 334457889998776
No 184
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.48 E-value=0.00081 Score=77.05 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=86.3
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
.++|+.|+...+.++-++|.|++|+|||.+..- ++..+.+.. .....++++++||-..+..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~-------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA-------DGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc-------CCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999986422 223332210 012347899999998888777665442211
Q ss_pred CCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHH------hcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK------EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 372 ~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~------~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
.++ . .. .......-..|..+|+.... ......-.++++||||+-++. ...+..+
T Consensus 226 -~~~-----~-----~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~l 285 (615)
T PRK10875 226 -LPL-----T-----DE----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARL 285 (615)
T ss_pred -ccc-----c-----hh----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHH
Confidence 110 0 00 00001112234444432211 111122346899999998775 5667778
Q ss_pred HhhCCCCccEEEEecC
Q 005837 446 ISSSPVTAQYLFVTAT 461 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT 461 (675)
++.+++..++|++.-.
T Consensus 286 l~al~~~~rlIlvGD~ 301 (615)
T PRK10875 286 IDALPPHARVIFLGDR 301 (615)
T ss_pred HHhcccCCEEEEecch
Confidence 8888888998888643
No 185
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.47 E-value=0.00027 Score=81.26 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEE
Q 005837 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610 (675)
Q Consensus 531 k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~V 610 (675)
+++||+.-..-...+...|... .+....+.|.|+...|.+.+..|.++.. ....+++..+.+.|+++..+.+|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~-----~~~~~~~~g~~~~~~r~~s~~~~~~~~~--~~vll~Slkag~~glnlt~a~~v 613 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFK-----GFVFLRYDGEMLMKIRTKSFTDFPCDPL--VTALLMSLKAGKVGLNLTAASHV 613 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhc-----ccccchhhhhhHHHHHHhhhcccccCcc--HHHHHHHHHHhhhhhchhhhhHH
Confidence 4555554444444444333322 2567788999999999999999996543 34466777889999999999999
Q ss_pred EEcCCCCCHHHHHHHhcccccCCCCccEEEE
Q 005837 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFI 641 (675)
Q Consensus 611 I~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~ 641 (675)
|..|+=+++...-|.+-||.| .|+.-.+.+
T Consensus 614 ~~~d~~wnp~~eeQaidR~hr-igq~k~v~v 643 (674)
T KOG1001|consen 614 LLMDPWWNPAVEEQAIDRAHR-IGQTKPVKV 643 (674)
T ss_pred HhhchhcChHHHHHHHHHHHH-hcccceeee
Confidence 999999999999999999999 666555544
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.46 E-value=0.00039 Score=74.99 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=66.9
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcch
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~ 386 (675)
-+||.|..|||||++++-.+...... ..+..++++++...|...+...+.+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhccc---------------
Confidence 47889999999999765443332011 23558899999999999777777653200
Q ss_pred HHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCC------ccHHHHHHHHHhh
Q 005837 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISS 448 (675)
Q Consensus 387 ~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~------~~~~~~l~~il~~ 448 (675)
......+..+..+.............+++|||||||.+... ......+..+++.
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00112333444443322222345677999999999999841 1224566666665
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.46 E-value=0.0013 Score=77.40 Aligned_cols=126 Identities=24% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++.|.+++..+..++-+++.|+.|+|||.+. -.++..+... .....+++++||-..+..+ .+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L----~e~ 387 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRL----GEV 387 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHH----HHh
Confidence 4689999999999998889999999999999853 2333333321 1114688899998777643 221
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHH-----hcccccccceEEEEcCcccccCCccHHHHHH
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK-----EGILQLINLRCAILDEVDILFNDEDFEVALQ 443 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~-----~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~ 443 (675)
.. .. . .|..+++.... .........++||||||+++. ...+.
T Consensus 388 ~g----~~----------a--------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd-----~~~~~ 434 (720)
T TIGR01448 388 TG----LT----------A--------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD-----TWLAL 434 (720)
T ss_pred cC----Cc----------c--------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC-----HHHHH
Confidence 11 00 0 11111111000 000112357799999999885 34556
Q ss_pred HHHhhCCCCccEEEEecC
Q 005837 444 SLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 444 ~il~~~~~~~qiI~lSAT 461 (675)
.++...+...++|++.-+
T Consensus 435 ~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 435 SLLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHHhCCCCCEEEEECcc
Confidence 677777778888887643
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.46 E-value=0.00085 Score=77.67 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred CChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
.+++.|.+++..++.. ..++|.||+|+|||.+..-.+.+.+.. +.++|+++||...+.++.+.+.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~------------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR------------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc------------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4678899999998876 678899999999998654444433322 44899999999999999888876
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.38 E-value=0.0023 Score=73.23 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=85.4
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCC
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~ 372 (675)
.+|+.++..++.++-++|.|+.|+|||.+..- ++..+..... ...+.++++++||--.+..+.+.+......
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~------~~~~~~I~l~APTGkAA~rL~e~~~~~~~~- 219 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSP------KQGKLRIALAAPTGKAAARLAESLRKAVKN- 219 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhcc------ccCCCcEEEECCcHHHHHHHHHHHHhhhcc-
Confidence 68999999999999999999999999986422 3333322110 011357999999998888766655442210
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHH------hcccccccceEEEEcCcccccCCccHHHHHHHHH
Q 005837 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK------EGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (675)
Q Consensus 373 ~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~------~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il 446 (675)
.... ... .....+-..|..+++.... ......-.+++|||||+-++. ...+..++
T Consensus 220 l~~~----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-----~~l~~~ll 280 (586)
T TIGR01447 220 LAAA----------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-----LPLMAKLL 280 (586)
T ss_pred cccc----------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-----HHHHHHHH
Confidence 0000 000 0011122344444432211 011123358899999998775 45677788
Q ss_pred hhCCCCccEEEEec
Q 005837 447 SSSPVTAQYLFVTA 460 (675)
Q Consensus 447 ~~~~~~~qiI~lSA 460 (675)
+.++...++|++.-
T Consensus 281 ~al~~~~rlIlvGD 294 (586)
T TIGR01447 281 KALPPNTKLILLGD 294 (586)
T ss_pred HhcCCCCEEEEECC
Confidence 88888889887764
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00078 Score=55.35 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=37.7
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+.-++|.+|.|+|||.+..-.+...+.... ..+.+++|++|++.++.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~--------~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARA--------DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhc--------CCCCeEEEECCCHHHHHHHHHHH
Confidence 344566999999999765554444443211 11558999999999999888887
No 191
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.34 E-value=0.0018 Score=67.51 Aligned_cols=144 Identities=13% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCCChHHHHHHhhhhhcCC--CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~--dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
.|+..-+..|.-|+..++... =+.+.|+.|+|||+.++.+.+....+.+ ..-++||.=|+..+.+++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~---------~y~KiiVtRp~vpvG~dI-- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK---------RYRKIIVTRPTVPVGEDI-- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh---------hhceEEEecCCcCccccc--
Confidence 466667788999999999763 4677899999999999888888887754 233788887876655432
Q ss_pred HHHHhhcCCCCceEEEEECCcchH--HHHHHhhCC----CcEEEeCHHHHHHHHHhccccccc----------ceEEEEc
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQK--TQLENLQEG----VDVLIATPGRFMFLIKEGILQLIN----------LRCAILD 427 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~--~~~~~l~~~----~~IlV~Tp~~L~~~l~~~~~~l~~----------i~~IVID 427 (675)
..+-|....+ .+...+... ...-=++.+.+...+.+..+.+.. =.+||||
T Consensus 293 --------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 --------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred --------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 1111111000 011100000 011112234444444443332222 2379999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
||+.+. ...++.|+.......+++++.
T Consensus 359 EaQNLT-----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 359 EAQNLT-----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hhhccC-----HHHHHHHHHhccCCCEEEEcC
Confidence 999887 578899999999888877654
No 192
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0055 Score=66.42 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=73.0
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE-EEEcCc-HHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV-VILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v-LVl~Pt-r~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
...++++||||+|||.+..-.+........ ..+.++ +|-+-+ |.-+..+.+.+.+.. ++.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~--------~~g~~V~lit~Dt~R~aa~eQL~~~a~~l----gvpv----- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD--------DKSLNIKIITIDNYRIGAKKQIQTYGDIM----GIPV----- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc--------cCCCeEEEEeccCccHHHHHHHHHHhhcC----Ccce-----
Confidence 356889999999999976543332222110 112233 344433 444443333333321 1111
Q ss_pred CcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCC-ccEEEEecC
Q 005837 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVTAT 461 (675)
Q Consensus 383 g~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~-~qiI~lSAT 461 (675)
..+-++..+...+.. +.++++|+||++.+...+......+..++...... ..++.+|||
T Consensus 237 ----------------~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 237 ----------------KAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred ----------------EeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 111234444444433 35688999999998863332345566666655433 467899999
Q ss_pred CCHHHHHHHHHhC
Q 005837 462 LPVEIYNKLVEVF 474 (675)
Q Consensus 462 ~~~~v~~~l~~~~ 474 (675)
........+...+
T Consensus 297 ~~~~~~~~~~~~~ 309 (388)
T PRK12723 297 TKTSDVKEIFHQF 309 (388)
T ss_pred CCHHHHHHHHHHh
Confidence 9766655554444
No 193
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.26 E-value=3.1e-05 Score=87.95 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEE
Q 005837 516 KKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593 (675)
Q Consensus 516 k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLV 593 (675)
|+..|..++++. .+++++||..-....+.+.+.+...+ ....+.|..+..+|...+++|.....+ .+++|+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~------~~~r~dG~~~~~~rq~ai~~~n~~~~~-~~cfll 688 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG------KYERIDGPITGPERQAAIDRFNAPGSN-QFCFLL 688 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC------cceeccCCccchhhhhhccccCCCCcc-ceEEEe
Confidence 444555555443 36799999977777666666665432 567789999999999999999966665 788999
Q ss_pred Eccccccc
Q 005837 594 CTDRASRG 601 (675)
Q Consensus 594 aT~~~~~G 601 (675)
+|.+.+.|
T Consensus 689 stra~g~g 696 (696)
T KOG0383|consen 689 STRAGGLG 696 (696)
T ss_pred ecccccCC
Confidence 99988766
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.26 E-value=0.002 Score=73.92 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=52.7
Q ss_pred CChHHHHHHhhhhhc----CCCEEEEccCCCCchHHHHHHHHHHHHHHH---hhc-c-----------C-----------
Q 005837 290 RPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEE---LQG-L-----------S----------- 339 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~----g~dvii~apTGsGKTl~~llp~l~~l~~~~---~~~-~-----------~----------- 339 (675)
+|++.|...+..+++ ..++++..|||+|||++.+-..|.+..... ..+ . +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 578899888877664 578999999999999977665555443221 000 0 0
Q ss_pred ----CCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 340 ----KSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 340 ----~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
...-.-|++.+-+-|-.-..|+.+++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 00012467777777778788888888775
No 195
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.18 E-value=0.00088 Score=67.08 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=50.4
Q ss_pred ChHHHHHHhhhhhcCCC-EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 291 PSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~d-vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
+++.|.+|+..+++... .+|+||.|+|||.+..- ++..+..... ......+.++||++|+-..+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56889999999999888 99999999999965433 3333311000 00114567999999999999999999888
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.10 E-value=0.0017 Score=58.95 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCCchHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~ 326 (675)
++.++|.|++|+|||.+....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999754433
No 197
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.015 Score=64.01 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=72.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEE-cC-cHHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-AP-TAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl-~P-tr~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
++.++++||||+|||.+..-.+....... .+.++.++ +- .+.-+.++...+.+... .++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----------~g~~V~li~~D~~r~~a~eqL~~~a~~~~--vp~------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----------GKKKVALITLDTYRIGAVEQLKTYAKIMG--IPV------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----------CCCeEEEEECCccHHHHHHHHHHHHHHhC--Cce-------
Confidence 45788899999999987654443332111 12244444 33 33323333322222211 111
Q ss_pred CcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh-CCCCccEEEEecC
Q 005837 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS-SPVTAQYLFVTAT 461 (675)
Q Consensus 383 g~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~-~~~~~qiI~lSAT 461 (675)
..+.++..+...+.. +..+++|+||.+-....+......+..++.. ..+....++++||
T Consensus 282 ----------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 282 ----------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ----------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 122344445444443 3357899999997655344445567777662 2233457889999
Q ss_pred CCHHHHHHHHHhC
Q 005837 462 LPVEIYNKLVEVF 474 (675)
Q Consensus 462 ~~~~v~~~l~~~~ 474 (675)
........+...|
T Consensus 342 ~~~~~l~~~~~~f 354 (424)
T PRK05703 342 TKYEDLKDIYKHF 354 (424)
T ss_pred CCHHHHHHHHHHh
Confidence 9877766666555
No 198
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.99 E-value=0.0065 Score=72.98 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=75.1
Q ss_pred CChHHHHHHhhhhhcCC-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.+++-|.+++..++++. -+++.|..|+|||.+ +-.+...+.. .+.+++.++||-..+..+ .+-
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----------~G~~V~~~ApTGkAA~~L----~e~ 409 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----------AGYEVRGAALSGIAAENL----EGG 409 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEecCcHHHHHHH----hhc
Confidence 68999999999999865 478899999999985 3333333322 255899999998666533 221
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
.++.. .|..+|..-.......+...++|||||+-++. ...+..+++.
T Consensus 410 ----tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~-----~~~m~~LL~~ 456 (988)
T PRK13889 410 ----SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG-----TRQLERVLSH 456 (988)
T ss_pred ----cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC-----HHHHHHHHHh
Confidence 11100 12222221111223346677899999998775 2344455543
Q ss_pred C-CCCccEEEEecC
Q 005837 449 S-PVTAQYLFVTAT 461 (675)
Q Consensus 449 ~-~~~~qiI~lSAT 461 (675)
. ....++|++.-+
T Consensus 457 a~~~garvVLVGD~ 470 (988)
T PRK13889 457 AADAGAKVVLVGDP 470 (988)
T ss_pred hhhCCCEEEEECCH
Confidence 3 456777777644
No 199
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.96 E-value=0.0075 Score=71.26 Aligned_cols=122 Identities=17% Similarity=0.179 Sum_probs=72.9
Q ss_pred CCChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
..+++-|.+++..++.+ +-++|.|+.|+|||...- .++..+.. .+..+++++||--.+..+. +
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-----------~g~~V~~~ApTg~Aa~~L~----~ 414 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-----------AGYRVIGAALSGKAAEGLQ----A 414 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-----------CCCeEEEEeCcHHHHHHHH----h
Confidence 35789999999998874 668899999999997532 23333322 2558999999976665432 2
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
-. ++.. .|-.++...+......+...++|||||+-++. . ..+..++.
T Consensus 415 ~~----g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~-~----~~~~~Ll~ 461 (744)
T TIGR02768 415 ES----GIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVG-S----RQMARVLK 461 (744)
T ss_pred cc----CCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCC-H----HHHHHHHH
Confidence 11 1111 12222211112222345678899999998875 2 22334444
Q ss_pred h-CCCCccEEEEe
Q 005837 448 S-SPVTAQYLFVT 459 (675)
Q Consensus 448 ~-~~~~~qiI~lS 459 (675)
. .....++|++.
T Consensus 462 ~~~~~~~kliLVG 474 (744)
T TIGR02768 462 EAEEAGAKVVLVG 474 (744)
T ss_pred HHHhcCCEEEEEC
Confidence 2 23456776665
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.007 Score=59.49 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=40.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHh
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
.+++++|+||-+.+...+......++.++....+..-++.++||...+....+..+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 34578999999977764455667788888777777788899999987766655544
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.89 E-value=0.0019 Score=67.92 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=74.3
Q ss_pred ChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc
Q 005837 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~ 370 (675)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+.++.++..++.+...
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789999988 5668999999999999987666655554431 2234799999999999999999988643
Q ss_pred CCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHH-HHHhcccccc-cceEEEEcCcc
Q 005837 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGILQLI-NLRCAILDEVD 430 (675)
Q Consensus 371 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~-~l~~~~~~l~-~i~~IVIDEaH 430 (675)
..... ................+.|+|...+.. +++....... .-.+-++|+..
T Consensus 71 ~~~~~-------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQE-------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCCHC-------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc-------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21000 000001111222245688999988874 3443222111 12345666655
No 202
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.012 Score=60.73 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=18.5
Q ss_pred hhhcCCCEEEEccCCCCchHHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~l 323 (675)
++-.+++++++||+|+|||-.+.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHH
Confidence 34467899999999999997543
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.019 Score=61.75 Aligned_cols=129 Identities=11% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEE-c-CcH-HHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-A-PTA-ELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl-~-Ptr-~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
+.+.++||||+|||......+... .. .+.++.++ + |.| ..+.|+......+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~-----------~GkkVglI~aDt~RiaAvEQLk~yae~l-------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HG-----------KKKTVGFITTDHSRIGTVQQLQDYVKTI-------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HH-----------cCCcEEEEecCCcchHHHHHHHHHhhhc--------------
Confidence 567899999999999765544432 22 13344444 4 333 3444433322221
Q ss_pred CcchHHHHHHhhCCCcEE-EeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 383 GFRQKTQLENLQEGVDVL-IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 383 g~~~~~~~~~l~~~~~Il-V~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
++.++ ..+|..+.+.+..-. ...++++|+||-+-+...+......+..++....+..-++.+|||
T Consensus 296 -------------gipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 296 -------------GFEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred -------------CCcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 11222 346666655554311 112578999999977654444455566666655555567779998
Q ss_pred CCHHHHHHHHHhC
Q 005837 462 LPVEIYNKLVEVF 474 (675)
Q Consensus 462 ~~~~v~~~l~~~~ 474 (675)
........+...|
T Consensus 362 tk~~d~~~i~~~F 374 (436)
T PRK11889 362 MKSKDMIEIITNF 374 (436)
T ss_pred cChHHHHHHHHHh
Confidence 7655433444433
No 204
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0031 Score=64.60 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=21.0
Q ss_pred HhhhhhcCCCEEEEccCCCCchHHHHH
Q 005837 298 AFPPVVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 298 ~i~~il~g~dvii~apTGsGKTl~~ll 324 (675)
+...+..+.+++++||+|+|||..+.-
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHHHH
Confidence 334555678999999999999986544
No 205
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.86 E-value=0.0028 Score=64.22 Aligned_cols=86 Identities=27% Similarity=0.416 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCc-chHHHHHHhh-CCCcEEEeCHHHHHHHHHhccccccc
Q 005837 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF-RQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 343 ~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~-~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
.+.|.+||||.+--=|.++.+.++.+.. .+..+.-++.-. ...++...+. ..+.|.|+||++|..+++.+.+.+..
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 5678999999988778888888887632 123455566554 5566666666 47999999999999999999999999
Q ss_pred ceEEEEcCcc
Q 005837 421 LRCAILDEVD 430 (675)
Q Consensus 421 i~~IVIDEaH 430 (675)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999865
No 206
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.014 Score=62.91 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc-Cc-HHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA-PT-AELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~-Pt-r~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
+..++++||||+|||....-.+...+... +..++.+++ .+ |.-+.++.+.+.+... +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~----------G~~~V~lit~D~~R~ga~EqL~~~a~~~g----v~~----- 197 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF----------GASKVALLTTDSYRIGGHEQLRIFGKILG----VPV----- 197 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----------CCCeEEEEecccccccHHHHHHHHHHHcC----Cce-----
Confidence 56789999999999997655444333221 112444433 22 2223333333333221 111
Q ss_pred CcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 383 g~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
..+-+++.+...+. .+.+.++|+||.+-....+......+..+.....+...+++++||.
T Consensus 198 ----------------~~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts 257 (374)
T PRK14722 198 ----------------HAVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS 257 (374)
T ss_pred ----------------EecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc
Confidence 12233333333333 2445689999999765423333444444433333345688899998
Q ss_pred CHHHHHHHHH
Q 005837 463 PVEIYNKLVE 472 (675)
Q Consensus 463 ~~~v~~~l~~ 472 (675)
..+....+..
T Consensus 258 ~~~~l~evi~ 267 (374)
T PRK14722 258 HGDTLNEVVQ 267 (374)
T ss_pred ChHHHHHHHH
Confidence 7766554433
No 207
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.0054 Score=67.58 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=75.1
Q ss_pred EEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHH-
Q 005837 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT- 388 (675)
Q Consensus 310 i~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~- 388 (675)
..|+||||||++..-.++....+. .-..|+.|.....++.....+..-.....-+.-.+.+++.....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-----------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-----------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-----------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee
Confidence 468999999998766666655432 22567777766665554433322110000011112222222111
Q ss_pred ---HHHHhhCCCcEEEeCHHHHHHHHHhc---cc---ccccce-EEEEcCcccccCC------------ccHHHHHHHHH
Q 005837 389 ---QLENLQEGVDVLIATPGRFMFLIKEG---IL---QLINLR-CAILDEVDILFND------------EDFEVALQSLI 446 (675)
Q Consensus 389 ---~~~~l~~~~~IlV~Tp~~L~~~l~~~---~~---~l~~i~-~IVIDEaH~l~~~------------~~~~~~l~~il 446 (675)
..........|.++|.+.|...+.+. .. ++.+.+ +++-||||++... ..+...+..-+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 11113346789999999998666542 12 233333 4677999998531 11222222223
Q ss_pred hhCCCCccEEEEecCCCH
Q 005837 447 SSSPVTAQYLFVTATLPV 464 (675)
Q Consensus 447 ~~~~~~~qiI~lSAT~~~ 464 (675)
.+ .+..-++.+|||.+.
T Consensus 151 ~~-nkd~~~lef~at~~k 167 (812)
T COG3421 151 EQ-NKDNLLLEFSATIPK 167 (812)
T ss_pred hc-CCCceeehhhhcCCc
Confidence 32 334556778999883
No 208
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.73 E-value=0.0079 Score=65.13 Aligned_cols=59 Identities=29% Similarity=0.413 Sum_probs=42.1
Q ss_pred ChHHHHHHhhhh------hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 291 PSQIQAMAFPPV------VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 291 ~~~iQ~~~i~~i------l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
+++-|++++..+ ..+.++++.|+-|+|||..+-. +.+.+. ..+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~-----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLR-----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhc-----------cccceEEEecchHHHHHhc
Confidence 567799998888 5678999999999999985422 222221 2345799999998766644
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.72 E-value=0.057 Score=58.00 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=81.3
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc-HHHHHHHHHHHHHhhcCCCCceEEEEECC
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt-r~La~Q~~~~l~~l~~~~~~~~v~~l~gg 383 (675)
++.+.++||||.|||++..=.+....... ......||.+-| |.=|..+.+.+.++... ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---------~~~kVaiITtDtYRIGA~EQLk~Ya~im~v--p~-------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---------KKKKVAIITTDTYRIGAVEQLKTYADIMGV--PL-------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---------cCcceEEEEeccchhhHHHHHHHHHHHhCC--ce--------
Confidence 67889999999999997544443333221 122245555554 33344444444444321 12
Q ss_pred cchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
.++-+|.-|...+. .+.++++|.||=+-+-..+......++.++.......-.+.+|||..
T Consensus 264 ---------------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 264 ---------------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred ---------------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc
Confidence 34456665554444 36667899999886554344556667787777766667789999998
Q ss_pred HHHHHHHHHhC
Q 005837 464 VEIYNKLVEVF 474 (675)
Q Consensus 464 ~~v~~~l~~~~ 474 (675)
..+...+...|
T Consensus 325 ~~dlkei~~~f 335 (407)
T COG1419 325 YEDLKEIIKQF 335 (407)
T ss_pred hHHHHHHHHHh
Confidence 77766665554
No 210
>PRK04296 thymidine kinase; Provisional
Probab=96.68 E-value=0.0033 Score=61.52 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=23.5
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
-.++.||+|+|||...+-.+..... .+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~------------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEE------------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH------------cCCeEEEEec
Confidence 4688999999999865544333322 2447888866
No 211
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.59 E-value=0.013 Score=54.35 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=38.5
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC--cCEEEEcCCCC
Q 005837 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG--VDHVVLFDFPR 617 (675)
Q Consensus 564 lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~--v~~VI~~d~p~ 617 (675)
+..+.+..+...+++.|++..- ..||+++..+..|||+|+ ++.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~---~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACE---NAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCC---CEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444556677889999987642 139999988999999988 57788877763
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.56 E-value=0.023 Score=51.69 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999754
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.52 E-value=0.039 Score=66.98 Aligned_cols=124 Identities=20% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCChHHHHHHhhhhhc-CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~-g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
..+++-|.+++..+.. ++-+++.|+.|+|||.+. -.+...+.. .+.+++.++||-..+..+ .+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-----------~G~~V~g~ApTgkAA~~L----~e 443 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-----------AGYRVVGGALAGKAAEGL----EK 443 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-----------cCCeEEEEcCcHHHHHHH----HH
Confidence 3689999999998864 466889999999999853 233333322 256899999997766543 32
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
.. ++.. .|-..|+.........+..-++|||||+.++. ...+..+++
T Consensus 444 ~~----Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~-----~~~m~~Ll~ 490 (1102)
T PRK13826 444 EA----GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA-----SRQMALFVE 490 (1102)
T ss_pred hh----CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC-----HHHHHHHHH
Confidence 11 1111 12222211111122346667799999999875 244444555
Q ss_pred hCC-CCccEEEEecC
Q 005837 448 SSP-VTAQYLFVTAT 461 (675)
Q Consensus 448 ~~~-~~~qiI~lSAT 461 (675)
... ...++|++.-+
T Consensus 491 ~~~~~garvVLVGD~ 505 (1102)
T PRK13826 491 AVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHhcCCEEEEECCH
Confidence 443 46777777643
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=96.44 E-value=0.043 Score=58.38 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=42.0
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~ 472 (675)
..+++|+||.+.++..+..+...++.+.....+...++.++||...+....+..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 346799999999987556677788888887777888899999887666655543
No 215
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.34 E-value=0.016 Score=53.90 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEccc--ccccCCCCC--cCEEEEcCCCC----C------------------------
Q 005837 571 ETRLANMKEFTTSRSKEARLFLVCTDR--ASRGIDFAG--VDHVVLFDFPR----D------------------------ 618 (675)
Q Consensus 571 ~eR~~v~~~F~~g~~~~~~~VLVaT~~--~~~GiDip~--v~~VI~~d~p~----s------------------------ 618 (675)
.+...+++.|++....+ -.||+++.- +..|||+|+ ++.||..++|. +
T Consensus 31 ~~~~~~l~~f~~~~~~~-g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 31 GETEELLEKYSAACEAR-GALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred chHHHHHHHHHHhcCCC-CEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 35578888898754311 238888876 999999998 67898888763 1
Q ss_pred ---HHHHHHHhcccccCCCCccEEEE
Q 005837 619 ---PSEYVRRVGRTARGAGGTGKAFI 641 (675)
Q Consensus 619 ---~~~y~Qr~GRagR~~g~~g~~i~ 641 (675)
+....|.+||+-|.....|.+++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~~D~g~i~l 135 (142)
T smart00491 110 FDAMRALAQAIGRAIRHKNDYGVVVL 135 (142)
T ss_pred HHHHHHHHHHhCccccCccceEEEEE
Confidence 12236999999995445554333
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.25 E-value=0.038 Score=55.96 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=25.9
Q ss_pred ceEEEEcCcccccCCccHHHHHHHHHhhCCC-C-ccEEEEecCCCHH
Q 005837 421 LRCAILDEVDILFNDEDFEVALQSLISSSPV-T-AQYLFVTATLPVE 465 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~-~-~qiI~lSAT~~~~ 465 (675)
+++++|||+|.+..+......+..++..... . .++| +|++.++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li-~ts~~~p~ 143 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL-ITGDRPPR 143 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE-EeCCCChH
Confidence 4689999999997544445555555544322 2 3444 45555443
No 217
>PRK05642 DNA replication initiation factor; Validated
Probab=96.17 E-value=0.02 Score=58.00 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.4
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~ 465 (675)
+++++|||++|.+.+.......+-.++.........+++|++.++.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 4578999999988744444555666665544433446677765543
No 218
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.07 E-value=0.57 Score=61.21 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=125.3
Q ss_pred CChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
.+++-|.+++..++.. +-.+|.|+.|+|||.+. -.+++.+.. .+..+++++||-..+..+.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~-----------~G~~V~~lAPTgrAA~~L~e~~g~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE-----------QGYEIQIITAGSLSAQELRQKIPR 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHhcc
Confidence 5788999999998875 56888999999999853 223333322 256899999998766654433211
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
... ........+.. ..-..|...++ .....+..-++||||||-++. ...+..++.
T Consensus 497 ~A~--------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~-----~~~~~~Ll~ 551 (1960)
T TIGR02760 497 LAS--------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS-----NNELLKLID 551 (1960)
T ss_pred hhh--------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC-----HHHHHHHHH
Confidence 000 00011111111 01112222232 222345567899999998775 345555555
Q ss_pred hC-CCCccEEEEecC--CC----HHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHH
Q 005837 448 SS-PVTAQYLFVTAT--LP----VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSAL 520 (675)
Q Consensus 448 ~~-~~~~qiI~lSAT--~~----~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l 520 (675)
.. ..+.++|++.-+ ++ -..+..+... ...........+....+ .+....+ ......+
T Consensus 552 ~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq~~~v---~i~~~~~-----------~~r~~~i 615 (1960)
T TIGR02760 552 KAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQKASV---EISEAVD-----------KLRVDYI 615 (1960)
T ss_pred HHhhcCCEEEEEcChhhcCccccchHHHHHHHC--CCcEEEeecccccCcce---eeeccCc-----------hHHHHHH
Confidence 44 467888887654 22 2455544432 11111111111111111 0110000 0122222
Q ss_pred H-HHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccC-----CCeeEEEec-CCCCHHHHHHHHHHHhcCC
Q 005837 521 L-QLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKE-----TRVRVLPFH-AALDQETRLANMKEFTTSR 584 (675)
Q Consensus 521 ~-~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~-----~~~~v~~lh-g~m~~~eR~~v~~~F~~g~ 584 (675)
. .++... ....++|+..+..+...+....+...... ..+.+..+. ..|+..++... ..|+.|.
T Consensus 616 a~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 616 ASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 2 222222 23458999999888888887776644211 123344443 36777777744 7777765
No 219
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.04 E-value=0.087 Score=57.42 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCCChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 288 FLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 288 ~~~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
+...+|-|.+=+..+. .+-++++.||+|+|||.+.+-.++..-...+ ...-+.++.+-|..-++....
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p--------~~~~KliYCSRTvpEieK~l~ 85 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP--------DEHRKLIYCSRTVPEIEKALE 85 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC--------cccceEEEecCcchHHHHHHH
Confidence 3455666755554333 3568999999999999976555554443321 123366776666555555555
Q ss_pred HHHHh
Q 005837 364 NCRSL 368 (675)
Q Consensus 364 ~l~~l 368 (675)
+++.+
T Consensus 86 El~~l 90 (755)
T KOG1131|consen 86 ELKRL 90 (755)
T ss_pred HHHHH
Confidence 55554
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.02 E-value=0.021 Score=51.49 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+..+++.||+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45789999999999996543
No 221
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.99 E-value=0.19 Score=51.94 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=72.2
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC--cH-HHHHHHHHHHHHhhcCCCCceEEEE
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP--TA-ELASQVLSNCRSLSKCGVPFRSMVV 380 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P--tr-~La~Q~~~~l~~l~~~~~~~~v~~l 380 (675)
.+..+.+++++|+|||..+...+... .. .+..+.++.- .+ ..+.|+......+ ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-----------~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~----- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-----------KKKTVGFITTDHSRIGTVQQLQDYVKTI-----GF----- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-----------cCCeEEEEecCCCCHHHHHHHHHHhhhc-----Cc-----
Confidence 34678899999999999765544332 21 1234444432 22 4555554433322 11
Q ss_pred ECCcchHHHHHHhhCCCcEEE-eCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 381 TGGFRQKTQLENLQEGVDVLI-ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 381 ~gg~~~~~~~~~l~~~~~IlV-~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
.+.. .++..+...+.. ......++++|||-+-+...+......+..++....+..-++.++
T Consensus 132 -----------------~~~~~~~~~~l~~~l~~-l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~ 193 (270)
T PRK06731 132 -----------------EVIAVRDEAAMTRALTY-FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLS 193 (270)
T ss_pred -----------------eEEecCCHHHHHHHHHH-HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEc
Confidence 1222 345555444432 112245789999999776533344555666666555555677899
Q ss_pred cCCCHHHHHHHHHhC
Q 005837 460 ATLPVEIYNKLVEVF 474 (675)
Q Consensus 460 AT~~~~v~~~l~~~~ 474 (675)
||..........+.|
T Consensus 194 a~~~~~d~~~~~~~f 208 (270)
T PRK06731 194 ASMKSKDMIEIITNF 208 (270)
T ss_pred CccCHHHHHHHHHHh
Confidence 997654443343433
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=95.94 E-value=0.025 Score=57.05 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=31.1
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCC-CCccEEEEecCCCHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIY 467 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-~~~qiI~lSAT~~~~v~ 467 (675)
.+.+++||||+|.+.++..+...+..++.... ...+++++|++.++..+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 45679999999998744444444555554433 24466778887765543
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=95.94 E-value=0.066 Score=60.69 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=85.3
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+.++|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-+..+++.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5789999999887666666788888999999766544433332 124589999999999998888887654
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
...+.+....+..... ..-.+.++..|.+.|-. .....-....++|+||+|.+.........+...+..-
T Consensus 129 e~~P~l~~~~i~~~~~---~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg 198 (534)
T PHA02533 129 ELLPDFLQPGIVEWNK---GSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSG 198 (534)
T ss_pred HhCHHHhhcceeecCc---cEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcC
Confidence 3211110000000000 00112345556554432 1112233467899999998862112222233333332
Q ss_pred CCCccEEEEecCC
Q 005837 450 PVTAQYLFVTATL 462 (675)
Q Consensus 450 ~~~~qiI~lSAT~ 462 (675)
...+++.+|+..
T Consensus 199 -~~~r~iiiSTp~ 210 (534)
T PHA02533 199 -RSSKIIITSTPN 210 (534)
T ss_pred -CCceEEEEECCC
Confidence 223455555543
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.92 E-value=0.067 Score=56.87 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+.++++.|+||+|||..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred CCcEEEECCCCCcHHHHHH
Confidence 5789999999999998543
No 225
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.90 E-value=0.14 Score=57.25 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.5
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
..+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999854
No 226
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.89 E-value=0.027 Score=65.47 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=78.6
Q ss_pred CChHHHHHHhhhhhcCC-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.++.-|++|+-.++..+ -.+|.|=+|+|||.+....+ +.+.. .+.+||+.+=|-..+..+.-.++.+
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~-----------~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA-----------LGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH-----------cCCeEEEEehhhHHHHHHHHHHhcc
Confidence 56788999999988765 47888999999998654332 22221 2558999999998888877776664
Q ss_pred hcCC----------CCceEEEEECCcc--hHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 369 SKCG----------VPFRSMVVTGGFR--QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 369 ~~~~----------~~~~v~~l~gg~~--~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
...- ..+.-.+++.+.+ .-.....+.....|+.+|--.+.+. .+..+.+++.|||||-.+.
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhccccCEEEEccccccc
Confidence 3210 0000011111111 1111223334577888886544322 2345668999999998775
No 227
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.24 Score=55.47 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHH
Q 005837 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (675)
Q Consensus 404 p~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~ 472 (675)
++.+...+.. +.++++||||.+-....+......+..+... .....+++++++........+.+
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHH
Confidence 3444444443 3468899999997654232223334433322 23456788888876544444433
No 228
>PRK06921 hypothetical protein; Provisional
Probab=95.80 E-value=0.1 Score=53.87 Aligned_cols=18 Identities=44% Similarity=0.446 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+.++++.|++|+|||..+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 578999999999999754
No 229
>PRK08727 hypothetical protein; Validated
Probab=95.77 E-value=0.058 Score=54.56 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.2
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
..+++.|++|+|||-..
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999743
No 230
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.13 Score=60.21 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=45.2
Q ss_pred eCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC
Q 005837 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (675)
Q Consensus 402 ~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~ 474 (675)
.+|..+.+.+.. +.+.++|+||=+-+...+......+..+.....+...++.++||...+.++.+...|
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 366666555553 345689999999776544445555666655555666788999998766666554433
No 231
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.70 E-value=0.025 Score=57.99 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred ccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 415 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 415 ~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
......++.||+||||.|. ..-+..+++.+........+++++.-+
T Consensus 124 ~~~~~~fKiiIlDEcdsmt--sdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMT--SDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhh--HHHHHHHHHHHhccccceEEEEEcCCh
Confidence 3456678999999999997 566778888888887788888888664
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.65 E-value=0.076 Score=62.07 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=53.9
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
..-..+++-|.+++-.- ..+++|.|..|||||.+..--+...+.... ..+.++|+++.++.++..+.+++
T Consensus 192 ~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~--------~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 192 VESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ--------AQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred ccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC--------CCHHHeEEEeccHHHHHHHHHHH
Confidence 33457899999998643 356899999999999986554443333221 22348999999999999999888
Q ss_pred HHhh
Q 005837 366 RSLS 369 (675)
Q Consensus 366 ~~l~ 369 (675)
.+..
T Consensus 262 ~~~l 265 (684)
T PRK11054 262 RERL 265 (684)
T ss_pred HHhc
Confidence 7753
No 233
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.14 Score=55.05 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=68.3
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEE-c-CcHH-HHHHHHHHHHHhhcCCCCceEEEEE
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-A-PTAE-LASQVLSNCRSLSKCGVPFRSMVVT 381 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl-~-Ptr~-La~Q~~~~l~~l~~~~~~~~v~~l~ 381 (675)
++.++++||+|+|||....-.+.... .. +.++.++ + |.|. .+.|+......+ ++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~-~~-----------g~~V~lItaDtyR~gAveQLk~yae~l-----gvpv---- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLL-KQ-----------NRTVGFITTDTFRSGAVEQFQGYADKL-----DVEL---- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc-----------CCeEEEEeCCccCccHHHHHHHHhhcC-----CCCE----
Confidence 45678999999999987554443322 21 2244444 3 3333 234433332221 1111
Q ss_pred CCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 382 gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
.+..+|..+...+..-. ....+++|+||=+-+...+......+..+.....+..-++.+||+
T Consensus 265 -----------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag 326 (407)
T PRK12726 265 -----------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG 326 (407)
T ss_pred -----------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc
Confidence 12245666654444311 224578999999876543444555666666666555556778887
Q ss_pred CCHHHHHHH
Q 005837 462 LPVEIYNKL 470 (675)
Q Consensus 462 ~~~~v~~~l 470 (675)
........+
T Consensus 327 ~~~~d~~~i 335 (407)
T PRK12726 327 MKSADVMTI 335 (407)
T ss_pred ccHHHHHHH
Confidence 665433333
No 234
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.59 E-value=0.049 Score=61.29 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhc-----C----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHH
Q 005837 293 QIQAMAFPPVVE-----G----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (675)
Q Consensus 293 ~iQ~~~i~~il~-----g----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~ 363 (675)
|+|.-++-.++. + +.+++..|=|.|||......++..+.-.. ..+..++++++++.-+..+++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g--------~~~~~i~~~A~~~~QA~~~f~ 72 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG--------EPGAEIYCAANTRDQAKIVFD 72 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC--------ccCceEEEEeCCHHHHHHHHH
Confidence 567777776662 2 45888899999999965544444443211 235689999999999999999
Q ss_pred HHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHH--hcccccccceEEEEcCcccccCCccHHHH
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVA 441 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~--~~~~~l~~i~~IVIDEaH~l~~~~~~~~~ 441 (675)
.+..+......+.... ....... ..-.|..-..+.+...+. .....-.+..++|+||+|.+. +......
T Consensus 73 ~~~~~i~~~~~l~~~~--~~~~~~~------~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~-~~~~~~~ 143 (477)
T PF03354_consen 73 EAKKMIEASPELRKRK--KPKIIKS------NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK-DDELYDA 143 (477)
T ss_pred HHHHHHHhChhhccch--hhhhhhh------hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC-CHHHHHH
Confidence 9888765422221100 0000000 011122211111111111 112233357899999999997 3334444
Q ss_pred HHHHHhhCCCCccEEEEe
Q 005837 442 LQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 442 l~~il~~~~~~~qiI~lS 459 (675)
+..-.... ++.+++.+|
T Consensus 144 l~~g~~~r-~~pl~~~IS 160 (477)
T PF03354_consen 144 LESGMGAR-PNPLIIIIS 160 (477)
T ss_pred HHhhhccC-CCceEEEEe
Confidence 44444443 344555544
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.50 E-value=0.13 Score=57.29 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=27.4
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCC-CCccEEEEecCCCHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEI 466 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-~~~qiI~lSAT~~~~v 466 (675)
..+++++||||+|.+.........+..++.... ...|+ ++|+..++..
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~i-Iltsd~~P~~ 252 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQL-FFSSDKSPEL 252 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcE-EEECCCCHHH
Confidence 346779999999988743333444555544433 23355 4555444443
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.40 E-value=0.12 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+..+++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356899999999999986543
No 237
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.39 E-value=0.3 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.4
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLR 331 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~ 331 (675)
..+++.|++|+|||.... .+.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~ 161 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEIL 161 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHH
Confidence 357899999999998542 3344443
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.35 E-value=0.11 Score=65.33 Aligned_cols=62 Identities=26% Similarity=0.394 Sum_probs=45.0
Q ss_pred CChHHHHHHhhhhhcC--CCEEEEccCCCCchHHH--HHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAY--LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~--llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
.+++-|.+++..++.. +-++|.|..|+|||.+. ++-++..+.+ ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e----------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE----------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh----------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 67899999999999863 2222222211 2345788999998777654
No 239
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.27 Score=53.85 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=68.4
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc-HHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt-r~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
.+.-+.++||||+|||......+...+... ......++.+.+ |.-+.++...+.++.. +.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~---------~~~~v~~i~~d~~rigalEQL~~~a~ilG----vp~----- 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH---------GADKVALLTTDSYRIGGHEQLRIYGKLLG----VSV----- 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc---------CCCeEEEEecCCcchhHHHHHHHHHHHcC----Cce-----
Confidence 356688899999999997654333332221 011234555554 3333333333333321 111
Q ss_pred CcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 383 g~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
..+.++..+...+. .+...++++||.+-+...+......+..+.....+...++.++||.
T Consensus 252 ----------------~~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~ 311 (420)
T PRK14721 252 ----------------RSIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS 311 (420)
T ss_pred ----------------ecCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC
Confidence 11223333322222 2556789999997433312223344444433333445678899998
Q ss_pred CHHHHHHHHHhC
Q 005837 463 PVEIYNKLVEVF 474 (675)
Q Consensus 463 ~~~v~~~l~~~~ 474 (675)
.......+...|
T Consensus 312 ~~~~~~~~~~~f 323 (420)
T PRK14721 312 SGDTLDEVISAY 323 (420)
T ss_pred CHHHHHHHHHHh
Confidence 777666666555
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.21 E-value=0.32 Score=49.47 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=26.9
Q ss_pred cccceEEEEcCcccccCCccHHH-HHHHHHhh-CCCCccEEEEecCCCHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEV-ALQSLISS-SPVTAQYLFVTATLPVE 465 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~-~l~~il~~-~~~~~qiI~lSAT~~~~ 465 (675)
+.++++|||||++... ...+.. .+..|+.. .....++|+.|---+.+
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 4468899999999876 344443 34444433 33345566555443333
No 241
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.42 Score=52.20 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=36.4
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCC---CCccEEEEecCCCHHHHHHHHHhC
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATLPVEIYNKLVEVF 474 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~---~~~qiI~lSAT~~~~v~~~l~~~~ 474 (675)
..+++|+||=+-+...+......+..++.... +...++.++||........+...|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45789999987665433444455666665442 235678899999886666665554
No 242
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.19 E-value=0.038 Score=66.00 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=86.1
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHH------HhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceE
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQE------ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~------~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v 377 (675)
.|+.+++.-..|.|||.+-+...+....+. ...........-+.+|||||.- +..||..++.+-... .+++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~--~lKv 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS--LLKV 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc--cceE
Confidence 356788889999999998765554432111 0011122223345789999975 455666666554332 2466
Q ss_pred EEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc--------------cccc------ccceEEEEcCcccccCCcc
Q 005837 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------------ILQL------INLRCAILDEVDILFNDED 437 (675)
Q Consensus 378 ~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~--------------~~~l------~~i~~IVIDEaH~l~~~~~ 437 (675)
....|=.+..-........+|||++|+..|..-+... .+.. -.|=.|++|||+++.....
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 6666543321111111235899999999987444321 1111 1123599999999863222
Q ss_pred HHHHHHHHHhhCCCCccEEEEecCCCHH
Q 005837 438 FEVALQSLISSSPVTAQYLFVTATLPVE 465 (675)
Q Consensus 438 ~~~~l~~il~~~~~~~qiI~lSAT~~~~ 465 (675)
....+.. .++ ....-.+|+|+-..
T Consensus 530 ~~a~M~~---rL~-~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVR---RLH-AINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHH---Hhh-hhceeeecCCchhh
Confidence 2222222 232 34447899997655
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.11 E-value=0.024 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.2
Q ss_pred hhhhhcCCCEEEEccCCCCchHHHHHH
Q 005837 299 FPPVVEGKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 299 i~~il~g~dvii~apTGsGKTl~~llp 325 (675)
...+-+++++++.|++|+|||..+...
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHH
Confidence 344456789999999999999865443
No 244
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.11 E-value=0.063 Score=55.22 Aligned_cols=67 Identities=19% Similarity=0.419 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCCCCceEEEEcccccccCCCCC--------cCEEEEcCCCCCHHHHHHHhcccccCCCC-ccEEEEEEe
Q 005837 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAG--------VDHVVLFDFPRDPSEYVRRVGRTARGAGG-TGKAFIFVV 644 (675)
Q Consensus 574 ~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~--------v~~VI~~d~p~s~~~y~Qr~GRagR~~g~-~g~~i~~~~ 644 (675)
....+.|.+|+.. |+|.|++++.||.+.+ -++-|.+.+|+|....+|..||+.| .++ ..-.|.++.
T Consensus 51 ~~e~~~F~~g~k~----v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hR-snQ~~~P~y~~l~ 125 (278)
T PF13871_consen 51 IAEKQAFMDGEKD----VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHR-SNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHHhCCCce----EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccc-cccccCCEEEEee
Confidence 3567799999877 9999999999997753 3456778999999999999999999 444 455555554
Q ss_pred C
Q 005837 645 G 645 (675)
Q Consensus 645 ~ 645 (675)
.
T Consensus 126 t 126 (278)
T PF13871_consen 126 T 126 (278)
T ss_pred c
Confidence 3
No 245
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.97 E-value=0.14 Score=60.99 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=33.0
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~ 471 (675)
...++++||||+|+|. ..-...+.++++..+.++.+|++| |-...+...+.
T Consensus 118 ~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIr 168 (824)
T PRK07764 118 ESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIR 168 (824)
T ss_pred cCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHH
Confidence 3578999999999997 333445566666666666667665 54444444333
No 246
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.96 E-value=0.011 Score=56.67 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=54.6
Q ss_pred EEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHH
Q 005837 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (675)
Q Consensus 309 ii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~ 388 (675)
|+.|+=|-|||.+.-+.+...+.. ...+++|.+|+.+-++..++.+..-... .+++..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~-~~~~~~~~~---~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKA-LGYKEEKKK---RIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhccc-ccccccccc---cccc
Confidence 578999999998755443322211 1247999999998888776665443221 111110000 0000
Q ss_pred HHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 389 ~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
.......+..|-+..|+.+... ....+++|||||=.+. .+.+..++...+ .++||.|.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp-----~p~L~~ll~~~~----~vv~stTi 123 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP-----LPLLKQLLRRFP----RVVFSTTI 123 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCSS----EEEEEEEB
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC-----HHHHHHHHhhCC----EEEEEeec
Confidence 0011122567888888866321 2245799999998776 567777765443 37778786
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.91 E-value=0.092 Score=50.74 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=32.1
Q ss_pred EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 308 vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
+++.|++|+|||...+-.+...+.. +..++|++. .+-..++.+++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~------------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR------------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC------------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999999665544444422 446777764 34566666666665
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.17 Score=51.90 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.4
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
.+.++++.|++|+|||..+...+ +.+... + .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~~~-----------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELLKA-----------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHHHc-----------C-CeEEEEEHHHHHHHHHHHHh
Confidence 67899999999999998654433 333331 2 34566677777776655544
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.88 E-value=0.13 Score=57.04 Aligned_cols=48 Identities=6% Similarity=0.176 Sum_probs=26.3
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccEEEEecCCCHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~v 466 (675)
.+.++++|||+|.+.+.......+..++..+ ....++|+.|-+.|..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 4578999999999874333333444444322 22445554444444443
No 250
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.86 E-value=0.12 Score=51.80 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=67.6
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHH-HHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCC----CceEE
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV----PFRSM 378 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~-~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~----~~~v~ 378 (675)
.|..+++.|++|+|||+-.+-.+.+.+.. .+ .+++++- .+-..++.+++..++..-. .-...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge------------~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~ 84 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE------------KVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLK 84 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--------------EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC------------cEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEE
Confidence 45789999999999998766556666554 32 6777773 3334666666665532100 00011
Q ss_pred EEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC---CccHHHHHHHHHhhCCCCccE
Q 005837 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSLISSSPVTAQY 455 (675)
Q Consensus 379 ~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~---~~~~~~~l~~il~~~~~~~qi 455 (675)
.+......... . -..++.+...+.+. ..-.+.+++|||-...+.. ...++..+..+...+.....+
T Consensus 85 ~~d~~~~~~~~--------~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t 153 (226)
T PF06745_consen 85 IIDAFPERIGW--------S--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVT 153 (226)
T ss_dssp EEESSGGGST---------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEE
T ss_pred EEecccccccc--------c--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 11111000000 0 12344444444331 1112237999999988721 334555666666555444444
Q ss_pred EEEecC
Q 005837 456 LFVTAT 461 (675)
Q Consensus 456 I~lSAT 461 (675)
+++++.
T Consensus 154 ~llt~~ 159 (226)
T PF06745_consen 154 TLLTSE 159 (226)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 555554
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=94.84 E-value=0.22 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.8
Q ss_pred hhhhcCCCEEEEccCCCCchHHHHH
Q 005837 300 PPVVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 300 ~~il~g~dvii~apTGsGKTl~~ll 324 (675)
..+..+.++++.||+|+|||..+..
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHH
Confidence 3355688999999999999985543
No 252
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.78 E-value=0.4 Score=54.81 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=27.5
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCC-CccEEEEecCCCHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVE 465 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~-~~qiI~lSAT~~~~ 465 (675)
+.++++|||||+|.+.+.......+-.++..+.. ..++|+.|-..+.+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 3457899999999997433333444445444332 45666544444433
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.77 E-value=0.24 Score=46.09 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=23.9
Q ss_pred EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH
Q 005837 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (675)
Q Consensus 308 vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L 357 (675)
+++.|++|+|||......+..... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------------cCCEEEEEECCcch
Confidence 678999999999965443332221 24567777664433
No 254
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.77 E-value=0.15 Score=51.12 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=29.2
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccEEEEecCCCHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVE 465 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~ 465 (675)
+..+++++||++|.+.+.......+-.++... ....++|+.|...|.+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 44688999999999974333344444444433 2345777666666554
No 255
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.67 E-value=0.2 Score=51.68 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=32.2
Q ss_pred hhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
-+..|..+++.|++|+|||......+.+.+.. .+..+++++-- +-..++.+++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----------~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ-----------HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCceEEEEEcc-cCHHHHHHHHH
Confidence 34557789999999999998554444433322 14467777632 22344444443
No 256
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.65 E-value=0.33 Score=54.00 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
..+++.||+|+|||.... .+.+.+.+. ..+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~---------~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN---------EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHh---------CCCCeEEEEEH
Confidence 358999999999998543 233344332 12346777654
No 257
>PRK12377 putative replication protein; Provisional
Probab=94.64 E-value=0.59 Score=47.66 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLR 331 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~ 331 (675)
..++++.|++|+|||-.+.. +.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 36799999999999975432 334443
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.54 E-value=0.13 Score=54.66 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=28.0
Q ss_pred ChHHHHHHhhhhhcC----CCEEEEccCCCCchHHHHHHH
Q 005837 291 PSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g----~dvii~apTGsGKTl~~llp~ 326 (675)
++|||...+..+... .-.++.||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 478999999888754 347899999999998665433
No 259
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.49 E-value=0.18 Score=52.36 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++++|+|+.|||.+. +++...-..........-|.++|-+|...-....+..+
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 58999999999999843 33332211111111122366777777664444444443
No 260
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.47 E-value=0.33 Score=53.62 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.4
Q ss_pred ceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHH
Q 005837 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~ 472 (675)
.++||||.+-+...+......+..+.....+..-++.++||...+..+.+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 3789999996554345566667777777767777888899887766655544
No 261
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.44 E-value=0.083 Score=61.96 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=52.8
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++-|.+++.+. ...++|.|..|||||.+...-+...+.... ....++|+|+-|+..|.++.+++.++.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3678899998763 457889999999999986655555443321 123479999999999999999988754
No 262
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.41 E-value=0.29 Score=62.38 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
..+++.|.+++..++.+ +-++|.|..|+|||... -.++..+.... ...+..++.++||-..+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~-------~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP-------ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh-------cccCceEEEECCcHHHHHHH
Confidence 36899999999999975 56889999999999853 22333332110 02345788899998777643
No 263
>PRK08116 hypothetical protein; Validated
Probab=94.38 E-value=0.5 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=18.6
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQ 332 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~ 332 (675)
..+++.|++|+|||..+. ++.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 349999999999998643 34455543
No 264
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.35 E-value=0.84 Score=52.42 Aligned_cols=152 Identities=9% Similarity=0.080 Sum_probs=80.6
Q ss_pred CChHHHHHHhhhhh---cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV---EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 290 ~~~~iQ~~~i~~il---~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
-|+|.=.+=|+.++ ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|++|...-++++++.+.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----------~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----------LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----------cCCeEEEECCChhhHHHHHHHHH
Confidence 34444444444444 45677888999999999765544433321 24589999999998998888877
Q ss_pred HhhcC-------CCCceEEEEECCcchHHHH--HHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCc
Q 005837 367 SLSKC-------GVPFRSMVVTGGFRQKTQL--ENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (675)
Q Consensus 367 ~l~~~-------~~~~~v~~l~gg~~~~~~~--~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~ 436 (675)
..... .....+....|+...-.-. ...+ .+..|.+.+-. .....-..++++|+|||+.+. .
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~-~- 308 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN-P- 308 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC-H-
Confidence 75531 1111222222221100000 0000 01233332221 112223457899999999987 2
Q ss_pred cHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 437 DFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 437 ~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
.....+.-.+.. ...+++++|.+-.
T Consensus 309 ~~l~aIlP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 309 GALLSVLPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHHHcc--CCCceEEEeCCCC
Confidence 223323333332 3566777777653
No 265
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.29 E-value=0.63 Score=48.20 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=37.8
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCC------CCccEEEEecCCCHHHHHHHHHh
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP------VTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~------~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
..++++|||=+-....+......++.+..... +...++.++||...+.......+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 55789999999877544455556777665544 56678899999877665555443
No 266
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.63 Score=52.14 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
...++++||||+|++. ...+. .+.+.+...++...+|+.| |-...+.
T Consensus 114 ~~~~KVvIIDEah~Ls-~~A~N-aLLK~LEePp~~v~fIlat-te~~Kl~ 160 (491)
T PRK14964 114 SSKFKVYIIDEVHMLS-NSAFN-ALLKTLEEPAPHVKFILAT-TEVKKIP 160 (491)
T ss_pred cCCceEEEEeChHhCC-HHHHH-HHHHHHhCCCCCeEEEEEe-CChHHHH
Confidence 4578999999999997 33343 3444455555555555544 5444443
No 267
>PLN03025 replication factor C subunit; Provisional
Probab=94.13 E-value=0.4 Score=50.94 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=27.8
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v 466 (675)
...+++||||+|.+. ..-...+..++...+....+++ +++....+
T Consensus 98 ~~~kviiiDE~d~lt--~~aq~aL~~~lE~~~~~t~~il-~~n~~~~i 142 (319)
T PLN03025 98 GRHKIVILDEADSMT--SGAQQALRRTMEIYSNTTRFAL-ACNTSSKI 142 (319)
T ss_pred CCeEEEEEechhhcC--HHHHHHHHHHHhcccCCceEEE-EeCCcccc
Confidence 357899999999996 3334555666665554555544 44444333
No 268
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.28 Score=55.44 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=26.8
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
.+++++||||+|+|. ...+. .+.+.+...+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls-~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLS-GHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcC-HHHHH-HHHHHHhccCCCeEEEEEE
Confidence 468999999999997 33443 3445566666666666655
No 269
>PF13173 AAA_14: AAA domain
Probab=94.11 E-value=0.42 Score=43.29 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=28.5
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v 466 (675)
.-.+|+|||+|.+. ++...++.+.... .+.+++ +|++.....
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~-~~~~ii-~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNG-PNIKII-LTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhc-cCceEE-EEccchHHH
Confidence 45689999999996 5777788887755 355655 455544333
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=0.31 Score=56.73 Aligned_cols=39 Identities=18% Similarity=0.460 Sum_probs=25.3
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
..++++||||+|+|. ...+... .+++...+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT-~~A~NAL-LKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLT-NHAFNAM-LKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCC-HHHHHHH-HHHHHhcCCCeEEEEEE
Confidence 468899999999997 3444444 44455555555655544
No 271
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.98 E-value=0.9 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=17.3
Q ss_pred EEEEccCCCCchHHHHHHHHHHHHH
Q 005837 308 CILADQSGSGKTLAYLLPVIQRLRQ 332 (675)
Q Consensus 308 vii~apTGsGKTl~~llp~l~~l~~ 332 (675)
++|.|+||+|||++.-. ++..+.+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELqe 807 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQH 807 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHH
Confidence 35999999999998544 4455543
No 272
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.22 Score=55.30 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.2
Q ss_pred CEEEEccCCCCchHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~ 326 (675)
..++.||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999999775543
No 273
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.31 Score=51.61 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=29.0
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
....+++|||+||.|. ..-...+.+.+..-+.+..+|++|..
T Consensus 111 ~g~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 111 YGIAQVVIVDPADAIN--RAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred cCCcEEEEeccHhhhC--HHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3568999999999996 44445555566666666666666543
No 274
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.84 E-value=0.15 Score=54.36 Aligned_cols=19 Identities=42% Similarity=0.424 Sum_probs=16.4
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.+.|++||.|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4799999999999997654
No 275
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.83 E-value=0.2 Score=58.94 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=52.3
Q ss_pred ChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
+++-|.+++.+ ...+++|.|..|||||.+..--+...+.... ....++|+|+.|+..+.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 57889999875 3458999999999999986665555553321 123479999999999999999887754
No 276
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.81 E-value=0.34 Score=55.49 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=27.9
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~ 465 (675)
....+++||||+|+|. ... ...+.+.+...+....+|+.| |-+..
T Consensus 116 ~~~~KVvIIDEah~Lt-~~A-~NALLK~LEEpp~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVT-TAG-FNALLKIVEEPPEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCC-HHH-HHHHHHHHhcCCCCeEEEEEe-CChHh
Confidence 3578899999999997 223 334445555555555556555 44333
No 277
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.78 E-value=0.14 Score=50.64 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=31.0
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
...+.+.||+||||.|. .+-...+++.+.......++.+..-+
T Consensus 110 p~grhKIiILDEADSMT--~gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMT--AGAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCceeEEEeeccchhh--hHHHHHHHHHHHHHcccchhhhhhcc
Confidence 34678899999999996 56677788877776666665554444
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=93.76 E-value=0.98 Score=49.86 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.2
Q ss_pred CEEEEccCCCCchHHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l 327 (675)
-+++++++|+|||++..-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 467899999999997654444
No 279
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.69 E-value=0.36 Score=63.02 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=44.4
Q ss_pred CCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHH---HHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYL---LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~l---lp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
..+++.|.+++..++.+ +-++|+|..|+|||.... -++.+.+.. .+..++.++||-..+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-----------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-----------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-----------cCCeEEEEeChHHHHHHH
Confidence 46899999999998865 557789999999998641 122222221 255789999997776654
No 280
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=0.35 Score=57.26 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=28.6
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
..++++||||+|+|. ..-...+.+.+...+..+.+|+. .|-+..+.
T Consensus 118 gk~KViIIDEAh~LT--~eAqNALLKtLEEPP~~vrFILa-TTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLS--RSSFNALLKTLEEPPEHVKFLLA-TTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcC--HHHHHHHHHHHhccCCCeEEEEE-CCCchhch
Confidence 568899999999996 33334445555555555665554 44444443
No 281
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.59 E-value=0.13 Score=60.94 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=53.6
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++-|.+++.+. ...++|.|..|||||.+..--+...+.... ....++|+|+-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 35789999998753 457999999999999986554444443211 22347999999999999999998886
Q ss_pred hc
Q 005837 369 SK 370 (675)
Q Consensus 369 ~~ 370 (675)
..
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 43
No 282
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.57 E-value=0.91 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.1
Q ss_pred CCEEEEccCCCCchHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~ 326 (675)
...+++||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999775543
No 283
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.48 E-value=0.1 Score=59.64 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=73.5
Q ss_pred CChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH-HHHH
Q 005837 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-SNCR 366 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~-~~l~ 366 (675)
..+|+|.+.+.++-.. +.++++.++-+|||.+.+-.+...+.. ...-+|++.||.+++.+.. .++.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-----------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-----------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-----------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 4569999999998764 678999999999999654433322221 2346899999999999876 5566
Q ss_pred HhhcCCCCceEEEEEC----CcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 367 SLSKCGVPFRSMVVTG----GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 367 ~l~~~~~~~~v~~l~g----g~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
.+......++- .+.. ..........+. +..|.++.-.. -..+.-..++++++||++.+..
T Consensus 85 Pmi~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 85 PMIRASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 65543332221 1111 001111111122 22333332210 0123445688999999999853
No 284
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.48 E-value=0.65 Score=46.62 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=31.2
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.|..+++.+++|+|||...+..+.+.+.. +..+++++- .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD------------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc------------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999998654434433321 235666664 22334554454444
No 285
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.41 E-value=0.87 Score=50.03 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=33.6
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
..+++||||=+-+...+......+..+.....+..-++.++||...+..+.+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a 232 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA 232 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH
Confidence 3467888888876654445556666666666666667788888765444333
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.36 E-value=0.57 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCCchHHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l 327 (675)
++.++++||||+|||....-.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788899999999987654333
No 287
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.33 E-value=0.3 Score=51.64 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=30.6
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
..++|||||+|.+. .......+..++...+...++|+ +++-+..+...+
T Consensus 100 ~~~vliiDe~d~l~-~~~~~~~L~~~le~~~~~~~~Il-t~n~~~~l~~~l 148 (316)
T PHA02544 100 GGKVIIIDEFDRLG-LADAQRHLRSFMEAYSKNCSFII-TANNKNGIIEPL 148 (316)
T ss_pred CCeEEEEECccccc-CHHHHHHHHHHHHhcCCCceEEE-EcCChhhchHHH
Confidence 46799999999984 23345567777777666666665 444333333333
No 288
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.30 E-value=1.4 Score=49.16 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=30.4
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhC
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~ 474 (675)
.+.+.++++||.+-+...+......+..+.....+...++.++||........+...+
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh
Confidence 3555678999997544311111122222222222233678889998776655555444
No 289
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.29 E-value=0.16 Score=60.21 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=53.1
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++-|.+++.+. ...++|.|..|||||.+..-=+...+.... ....++|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4779999998753 357999999999999986554443333221 223479999999999999999998864
Q ss_pred c
Q 005837 370 K 370 (675)
Q Consensus 370 ~ 370 (675)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 3
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.28 E-value=0.62 Score=49.62 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=25.8
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++|||||+|.+. ......+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALR--EDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCC--HHHHHHHHHHHHhccCCCeEEEEe
Confidence 456799999999885 333445666666665556655543
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.24 E-value=0.43 Score=45.29 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=30.2
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
..++++||||||.|. ......+.+.+..-+.+..++++|..
T Consensus 101 ~~~KviiI~~ad~l~--~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT--EEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS---HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhh--HHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 569999999999996 55566677777777777777766654
No 292
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.15 E-value=0.35 Score=55.91 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=25.7
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
..+.+++||||+|.+. ...+ ..+.+.+...+..+.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls-~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLS-KSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccC-HHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 3568899999999886 2233 33445555555566666555
No 293
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.14 E-value=0.31 Score=61.22 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=75.9
Q ss_pred ChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc
Q 005837 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~ 370 (675)
+|+-|.++|.. .+.+++|.|..|||||.+..--++..+... ..--++|+++=|+..+.++..++++...
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 57889999973 578999999999999998766666655432 1113699999999999999888877433
Q ss_pred CCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH-HHHHhcccccc-cceEEEEcCccc
Q 005837 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLI-NLRCAILDEVDI 431 (675)
Q Consensus 371 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~-~~l~~~~~~l~-~i~~IVIDEaH~ 431 (675)
... . .........+.+..-...-|+|...+. +++++..+.+. +-.+=|.||...
T Consensus 71 ~~~--~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KAL--Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHH--h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 100 0 000111111222223456789999887 44444322211 113345787753
No 294
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.08 E-value=0.92 Score=49.56 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
.+++|.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999964
No 295
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=0.26 Score=56.46 Aligned_cols=41 Identities=17% Similarity=0.430 Sum_probs=26.2
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
...++++||||+|+|. ...+.. +.+.+..-+.++.+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls-~~AaNA-LLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLT-NHAFNA-MLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcC-HHHHHH-HHHhhccCCCCceEEEEeC
Confidence 4568999999999997 344443 3334454455566665553
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.03 E-value=0.21 Score=57.26 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=25.3
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
.+++++||||+|+|. ...+ ..+.+++...+....+|+.|
T Consensus 117 gk~KV~IIDEVh~LS-~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLS-THSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcC-HHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 468899999999996 3333 34555555555555555544
No 297
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.00 E-value=0.9 Score=52.58 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=24.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEE
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~l 458 (675)
...++++||||+|+|. ...+...++ .+..-+....+|+.
T Consensus 117 ~g~~KV~IIDEah~Ls-~~a~NALLK-tLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLS-RHSFNALLK-TLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCC-HHHHHHHHH-HHHcCCCCeEEEEe
Confidence 3568899999999997 334444444 44544445555554
No 298
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.97 E-value=0.81 Score=46.32 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=35.8
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|..+++.|++|+|||+..+-.+.+.+.. +-.++|++ +.+-..++.+++..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~------------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM------------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc------------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 35789999999999999655445544422 34677777 3445666767666654
No 299
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.97 E-value=0.36 Score=56.99 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEE-ecCCCCHHHHHHHHHHHhcCCCCCCceEEEE
Q 005837 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP-FHAALDQETRLANMKEFTTSRSKEARLFLVC 594 (675)
Q Consensus 516 k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~-lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa 594 (675)
.+-.+..+.-...+.++++.++|..-+.++++.|+.+........+.. ||+.|+..++.+++++|.+|+.+ |||+
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfd----Ilit 187 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFD----ILIT 187 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCcc----EEEE
Confidence 344455555555668999999999999999999988764433233322 99999999999999999999988 9999
Q ss_pred ccccc
Q 005837 595 TDRAS 599 (675)
Q Consensus 595 T~~~~ 599 (675)
|..+-
T Consensus 188 Ts~FL 192 (1187)
T COG1110 188 TSQFL 192 (1187)
T ss_pred eHHHH
Confidence 98654
No 300
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.96 E-value=0.36 Score=53.06 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHH
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~l 323 (675)
......+..+..++++++.||+|+|||..+.
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445556667789999999999999998664
No 301
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.94 E-value=0.91 Score=40.64 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.5
Q ss_pred EEEEccCCCCchHHHH
Q 005837 308 CILADQSGSGKTLAYL 323 (675)
Q Consensus 308 vii~apTGsGKTl~~l 323 (675)
+++.||.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5889999999998543
No 302
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.92 E-value=0.57 Score=46.95 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+..+++.|++|+|||..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999744
No 303
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.84 E-value=1.4 Score=51.44 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=85.3
Q ss_pred HHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 284 KRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 284 ~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
.....+....-|.+.+..++.. +-+++.|.=|=|||.+.=+.+....... ...+++|.+|+.+-++..
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~----------~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA----------GSVRIIVTAPTPANVQTL 277 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc----------CCceEEEeCCCHHHHHHH
Confidence 3333344445556666667764 3578899999999987665552222211 135899999999999888
Q ss_pred HHHHHHhhcC-CCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHH
Q 005837 362 LSNCRSLSKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440 (675)
Q Consensus 362 ~~~l~~l~~~-~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~ 440 (675)
+..+.+-... +....+..-..+... ........|=+..|..-. . .-+++|||||-.+. .+
T Consensus 278 f~fa~~~l~~lg~~~~v~~d~~g~~~----~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp-----lp 338 (758)
T COG1444 278 FEFAGKGLEFLGYKRKVAPDALGEIR----EVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP-----LP 338 (758)
T ss_pred HHHHHHhHHHhCCcccccccccccee----eecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC-----hH
Confidence 7776553221 111111111101000 001123446777776331 1 16799999997765 57
Q ss_pred HHHHHHhhCCCCccEEEEecCC
Q 005837 441 ALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 441 ~l~~il~~~~~~~qiI~lSAT~ 462 (675)
.+.+++...+. ++||.|+
T Consensus 339 lL~~l~~~~~r----v~~sTTI 356 (758)
T COG1444 339 LLHKLLRRFPR----VLFSTTI 356 (758)
T ss_pred HHHHHHhhcCc----eEEEeee
Confidence 77777765443 8889887
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.78 E-value=3.4 Score=43.78 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.5
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhC------CCCccEEEEecCCCHHHHHHHHHh
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSS------PVTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~------~~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
.++++||||=+-++..+......++.+.+.. .+...++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 5678999999987764445556666665432 234567899999876655555443
No 305
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.77 E-value=0.5 Score=52.12 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=15.7
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999986543
No 306
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.62 E-value=0.71 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 5789999999999997644
No 307
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.61 E-value=0.56 Score=55.21 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=15.9
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999986543
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.50 E-value=2.1 Score=40.72 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=32.7
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHh
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
...+++|||.......+......+..+........-++.+.+....+..+....+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3567899999886642233344455544444455567777787666655555444
No 309
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.47 E-value=0.17 Score=57.06 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=37.8
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~ 333 (675)
+|+.+|.+.+..+. .|+-.|+..|||+|||+..+-.++.++...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 68899988887765 488899999999999999988888888765
No 310
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.45 E-value=0.63 Score=52.17 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=58.0
Q ss_pred ccCCCHHHH-HHHHHCCCCCChH----HHHHHhhhhh--cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCC
Q 005837 272 ELGCSDYMI-ESLKRQNFLRPSQ----IQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (675)
Q Consensus 272 ~~~l~~~l~-~~l~~~g~~~~~~----iQ~~~i~~il--~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~ 344 (675)
+.+..++++ ..|.+.--.+++. +|.+-=+.|. .+.-+||+|..|||||.+++--+...+.... ....
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R------~~l~ 259 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR------GPLQ 259 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc------cccc
Confidence 445556554 4555443222222 3333333333 2456889999999999987654443333321 1123
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcC
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKC 371 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~ 371 (675)
+..|||+.|.+.+..-+.+.+-+++..
T Consensus 260 ~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 260 AKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred cCceEEEcCcHHHHHHHHHhchhhccC
Confidence 334999999999999999999998764
No 311
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.37 E-value=0.62 Score=54.87 Aligned_cols=80 Identities=11% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccccCCCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASRGIDFAG 606 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~GiDip~ 606 (675)
.+.+++|.++++.-|.+.++.++++... .++.+..+||+++..+|.+++..+.+|..+ |+|+|.. +...+.+.+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~----IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEAD----IVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCC----EEEchHHHhcccchhcc
Confidence 3568999999999999999999887633 247899999999999999999999999888 9999964 445677888
Q ss_pred cCEEEE
Q 005837 607 VDHVVL 612 (675)
Q Consensus 607 v~~VI~ 612 (675)
+.+||.
T Consensus 384 l~lvVI 389 (681)
T PRK10917 384 LGLVII 389 (681)
T ss_pred cceEEE
Confidence 888875
No 312
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.30 E-value=2.1 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.7
Q ss_pred CEEEEccCCCCchHHHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPVIQ 328 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~ 328 (675)
-++++|++|+|||++..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4778999999999976544443
No 313
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.71 Score=53.21 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=27.0
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v 466 (675)
...++++||||+|+|. ...|.. +.+.+...+....+|+.| |-+..+
T Consensus 122 ~g~~KV~IIDEvh~Ls-~~a~Na-LLKtLEEPP~~~~fIL~T-td~~ki 167 (618)
T PRK14951 122 QGRFKVFMIDEVHMLT-NTAFNA-MLKTLEEPPEYLKFVLAT-TDPQKV 167 (618)
T ss_pred cCCceEEEEEChhhCC-HHHHHH-HHHhcccCCCCeEEEEEE-CCchhh
Confidence 3568999999999997 333433 333444444445555544 544443
No 314
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.19 E-value=0.42 Score=49.25 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=32.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~ 333 (675)
.+|+++++++-+.+.+.. ..-=+++.||||||||.+ +..++.++.+.
T Consensus 106 ~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 106 PTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 478888888877663321 111378899999999987 35567777654
No 315
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.10 E-value=1.4 Score=50.50 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=80.3
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc-CCCCceEEEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVT 381 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~-~~~~~~v~~l~ 381 (675)
...+-.++..|=-.|||+... +++..+... ..+-+++|++|.+..++.+++++..... +..+..+....
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s---------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk 321 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT---------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK 321 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh---------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec
Confidence 455678888899999999655 444444322 2366999999999999999988887543 21111122222
Q ss_pred CCcchHHHHHHhhCC--CcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 382 GGFRQKTQLENLQEG--VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 382 gg~~~~~~~~~l~~~--~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
| ... .-.+..+ ..|.+++-. ......-+.++++|||||+.+. +..+...+ -.+.. .+.++|++|
T Consensus 322 G-e~I---~i~f~nG~kstI~FaSar------ntNsiRGqtfDLLIVDEAqFIk-~~al~~il-p~l~~--~n~k~I~IS 387 (738)
T PHA03368 322 G-ETI---SFSFPDGSRSTIVFASSH------NTNGIRGQDFNLLFVDEANFIR-PDAVQTIM-GFLNQ--TNCKIIFVS 387 (738)
T ss_pred C-cEE---EEEecCCCccEEEEEecc------CCCCccCCcccEEEEechhhCC-HHHHHHHH-HHHhc--cCccEEEEe
Confidence 2 111 0011112 355555321 1122334578999999999997 33333333 22222 378889999
Q ss_pred cCC
Q 005837 460 ATL 462 (675)
Q Consensus 460 AT~ 462 (675)
.|-
T Consensus 388 S~N 390 (738)
T PHA03368 388 STN 390 (738)
T ss_pred cCC
Confidence 774
No 316
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.05 E-value=0.88 Score=45.97 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=27.2
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
..|.-++|.|++|+|||...+-.+++.+.. .+..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----------~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK-----------QGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCceEEEeC
Confidence 456778999999999998654444444433 1447788873
No 317
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.04 E-value=0.51 Score=49.71 Aligned_cols=19 Identities=42% Similarity=0.403 Sum_probs=15.8
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.++|+++|.|+|||..+-+
T Consensus 163 pSmIlWGppG~GKTtlArl 181 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL 181 (554)
T ss_pred CceEEecCCCCchHHHHHH
Confidence 4799999999999986543
No 318
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.92 E-value=0.7 Score=49.02 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=26.7
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
....+++|||+||.|. ..-...+.+.+..-+.+..+|++|.
T Consensus 105 ~g~~KV~iI~~a~~m~--~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLT--EAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 4568999999999997 3444555555565555555554443
No 319
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.91 E-value=0.39 Score=46.45 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=57.7
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcch
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~ 386 (675)
=.++.+|+.||||.-.+. .+.... ..+-++++..|... . +++. -.+..-.|- .
T Consensus 6 l~~i~gpM~SGKT~eLl~----r~~~~~--------~~g~~v~vfkp~iD---~------R~~~----~~V~Sr~G~-~- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLR----RARRYK--------EAGMKVLVFKPAID---T------RYGV----GKVSSRIGL-S- 58 (201)
T ss_pred EEEEEccCcCcchHHHHH----HHHHHH--------HcCCeEEEEecccc---c------cccc----ceeeeccCC-c-
Confidence 357899999999995333 333222 22558899888421 0 0000 011111111 1
Q ss_pred HHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 387 ~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
...++|-.+..+...+...... ..+++|.||||+.+. ...-..+..+...+
T Consensus 59 ---------~~A~~i~~~~~i~~~i~~~~~~-~~~~~v~IDEaQF~~--~~~v~~l~~lad~l 109 (201)
T COG1435 59 ---------SEAVVIPSDTDIFDEIAALHEK-PPVDCVLIDEAQFFD--EELVYVLNELADRL 109 (201)
T ss_pred ---------ccceecCChHHHHHHHHhcccC-CCcCEEEEehhHhCC--HHHHHHHHHHHhhc
Confidence 1245666666676666653322 228899999999886 44455566665543
No 320
>PRK04195 replication factor C large subunit; Provisional
Probab=91.89 E-value=0.91 Score=51.19 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=27.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc---CCCEEEEccCCCCchHHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~---g~dvii~apTGsGKTl~~l 323 (675)
.+|+++-..+...+.|... +..... .+.+++.||+|+|||..+.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4667766666665555421 011112 4679999999999998653
No 321
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=0.61 Score=53.71 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=26.3
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ...+ ..+.+.+...+....+|+.|
T Consensus 130 ~a~~KVvIIDEad~Ls-~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLS-TAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCC-HHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 4568899999999997 3333 33444455555566666655
No 322
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.78 E-value=0.33 Score=57.67 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=52.9
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++-|.+++.+. ...++|.|..|||||.+..--+...+.+.. ...-++|+++-|+..+.++.+++.++.
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN--------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 5789999999753 457999999999999986655554443321 122379999999999999999888764
No 323
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=1 Score=48.70 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=24.2
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ...+. .+.+.+...+....+|+.|
T Consensus 117 ~~~~kviIIDEa~~l~-~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLS-RHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcC-HHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 3467899999999996 22233 3344444444455555544
No 324
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.56 E-value=0.45 Score=50.43 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=39.9
Q ss_pred HHHHHCCCCCChHHHHHHhhhh-hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH
Q 005837 281 ESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (675)
Q Consensus 281 ~~l~~~g~~~~~~iQ~~~i~~i-l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L 357 (675)
+.+.+.|+ +++.|.+.+..+ ..+.+++++|+||||||... -.++..+... ....++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~---------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQ---------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhc---------CCCceEEEEcCCCcc
Confidence 33444444 446677777654 45789999999999999643 3333332211 123477777777765
No 325
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.50 E-value=0.9 Score=49.41 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=32.3
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCC-CccEEEEecCCCHHHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIY 467 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~-~~qiI~lSAT~~~~v~ 467 (675)
++++++||.++.+.+.......+-.++..+.. ..|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 68899999999998654555555555555543 3477766666666543
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.48 E-value=0.64 Score=51.78 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=34.2
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|.-+++.|++|+|||...+..+..... .+.+++|++- .+-..|+..++.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA------------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh------------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3567889999999999855443333221 1447888875 344567766666654
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.48 E-value=1.3 Score=45.49 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=20.3
Q ss_pred HHHHHHhhhhh----cC-CCEEEEccCCCCchHHHH
Q 005837 293 QIQAMAFPPVV----EG-KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 293 ~iQ~~~i~~il----~g-~dvii~apTGsGKTl~~l 323 (675)
+.+.+++..+. .+ ..+++.||+|+|||....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445554432 22 358899999999998643
No 328
>PRK05973 replicative DNA helicase; Provisional
Probab=91.43 E-value=1.6 Score=44.14 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=37.6
Q ss_pred HhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 298 ~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
...-+..|.-++|.|++|+|||+..+-.+.+.+.. +..++|++-- +-..|+.+++..++
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~------------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS------------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc------------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 33445556788999999999999665545444322 3367777532 22466666776653
No 329
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.30 E-value=0.56 Score=49.70 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=36.9
Q ss_pred ChHHHHHHhhhhh-cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 291 PSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 291 ~~~iQ~~~i~~il-~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
+++.|.+.+..+. .+.+++|+|+||||||... -.++..+... ...-+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~---------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS---------APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC---------CCCceEEEecCCcccc
Confidence 4567777766654 4679999999999999843 2333333211 1233777777777753
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.25 E-value=0.75 Score=48.92 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.0
Q ss_pred hHHHHHHhhhhhc--C---CCEEEEccCCCCchHHHHHHH
Q 005837 292 SQIQAMAFPPVVE--G---KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 292 ~~iQ~~~i~~il~--g---~dvii~apTGsGKTl~~llp~ 326 (675)
+|||...|..+.. + ...++.||.|.|||..+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 5778777777663 2 358899999999998765543
No 331
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.24 E-value=0.84 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=18.4
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLR 331 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~ 331 (675)
.+++|.||+|+|||.+.. .++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 579999999999998643 3444443
No 332
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=3.2 Score=44.94 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQ 332 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~ 332 (675)
.|+++.|+||+|||.+... +++.+.+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 5799999999999997544 4455544
No 333
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.10 E-value=0.19 Score=62.61 Aligned_cols=93 Identities=22% Similarity=0.350 Sum_probs=78.1
Q ss_pred ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCC-----------HHHHHHHHHHHhcCCCCCCceEEEEccccc
Q 005837 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD-----------QETRLANMKEFTTSRSKEARLFLVCTDRAS 599 (675)
Q Consensus 531 k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~-----------~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~ 599 (675)
..|+|++.+..+....+.+++.......+ +.|.+. +..+.+++..|....++ +|++|.++.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln----~L~~~~~~~ 365 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLF----VTGASGANLWKSFKNELELRQAEVLRRFHFHELN----LLIATSVLE 365 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcce----eeccccCccchhhHHHHHhhhHHHHHHHhhhhhh----HHHHHHHHH
Confidence 57999999999999999888876544333 333221 23467899999999988 999999999
Q ss_pred ccCCCCCcCEEEEcCCCCCHHHHHHHhccccc
Q 005837 600 RGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 600 ~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 631 (675)
.|+|++.++.|++++.|.....|+|..||+-+
T Consensus 366 e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 366 EGVDVPKCNLVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhcchhhhhhheeccCcchHHHHHHhhccccc
Confidence 99999999999999999999999999999887
No 334
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=91.04 E-value=0.73 Score=50.51 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=71.7
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~-La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
-.++.|..|||||.+..+-++..+... ..+.+++++-++.. |-.-+...+...... .++....-.....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---------KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---------CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCc
Confidence 367899999999998877777666653 13468899989885 555566666553221 1111000000000
Q ss_pred hHHHHHHhhCCCcEEEeCH-HHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCH
Q 005837 386 QKTQLENLQEGVDVLIATP-GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (675)
Q Consensus 386 ~~~~~~~l~~~~~IlV~Tp-~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~ 464 (675)
. .+.....+..|++..- +...+ ......+.++.+|||..+. ...+...+.+ ++. +.....+++|.++..
T Consensus 73 ~--~i~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~-~~~~~~l~~r-lr~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 73 M--EIKILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLT-FEDIKELIPR-LRE-TGGKKFIIFSSNPES 142 (396)
T ss_pred c--EEEecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcC-HHHHHHHHHH-hhc-cCCccEEEEEcCcCC
Confidence 0 0000011334555433 21111 1123346899999999886 3333333333 222 122224778888754
No 335
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.03 E-value=0.9 Score=47.95 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=29.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
...++++||||||.|. .+-...+.+.+...+.+..+++.|-
T Consensus 107 ~~~~kviiidead~mt--~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLT--EDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHh--HHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3678999999999997 4555667777766666666665554
No 336
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=1.7 Score=49.99 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=28.5
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
...++++||||+|+|. ... ...+.+.+...+....+|+.| |-+..+.
T Consensus 117 ~~~~KVvIIdev~~Lt-~~a-~naLLk~LEepp~~~~fIl~t-~~~~kl~ 163 (576)
T PRK14965 117 RSRYKIFIIDEVHMLS-TNA-FNALLKTLEEPPPHVKFIFAT-TEPHKVP 163 (576)
T ss_pred cCCceEEEEEChhhCC-HHH-HHHHHHHHHcCCCCeEEEEEe-CChhhhh
Confidence 4578999999999997 223 334555555555555555544 4333333
No 337
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.86 E-value=1.7 Score=46.82 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=27.2
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
...++++||||||.|. ..-...+.+.+...+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~--~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMN--RNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcC--HHHHHHHHHHHhcCCCCceEEEEEC
Confidence 4578899999999996 3334445555665555555566653
No 338
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.84 E-value=1.4 Score=51.91 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=62.6
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
+.++||.++++..+.++.+.|++.. +..+..+||+++..+|.+.+....+|..+ |+|+|..... +.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~----IVVgTrsal~-~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAK----VVIGARSALF-LPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCC----EEEeccHHhc-ccccCCC
Confidence 5689999999999999999998753 25788999999999999999999999877 9999974332 4566788
Q ss_pred EEEEc
Q 005837 609 HVVLF 613 (675)
Q Consensus 609 ~VI~~ 613 (675)
+||.-
T Consensus 261 liVvD 265 (679)
T PRK05580 261 LIIVD 265 (679)
T ss_pred EEEEE
Confidence 77753
No 339
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.84 E-value=1.1 Score=50.81 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=26.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ..-...+.+.+...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls--~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLS--KQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhcc--HHHHHHHHHHHhcCCCCceEEEEE
Confidence 4567899999999997 233344555566555566666655
No 340
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.84 E-value=0.8 Score=52.09 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=26.1
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++++||||+|.|. ...+. .+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls-~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLS-KSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCC-HHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 4568899999999997 33333 3444455555566666665
No 341
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.83 E-value=1.7 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.1
Q ss_pred CEEEEccCCCCchHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~ 326 (675)
-.|++||.|+|||.++-..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999999775543
No 342
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.77 E-value=1.4 Score=45.22 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=25.5
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
.|.-++|.|++|+|||...+..+.+.+. .+.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~------------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS------------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------------CCCcEEEEE
Confidence 4567899999999999865544444332 244778877
No 343
>PHA00729 NTP-binding motif containing protein
Probab=90.75 E-value=1.8 Score=43.31 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.++++.|++|+|||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 379999999999998543
No 344
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.68 E-value=1.1 Score=47.79 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=25.9
Q ss_pred hHHHHHHhhhhhc--C---CCEEEEccCCCCchHHHHHHH
Q 005837 292 SQIQAMAFPPVVE--G---KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 292 ~~iQ~~~i~~il~--g---~dvii~apTGsGKTl~~llp~ 326 (675)
+|||...+..+.. + .-.++.||.|.||+..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5778877777664 2 357899999999998765433
No 345
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.66 E-value=0.71 Score=48.62 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCCChHHHHHHhhhhhcCC-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~ 361 (675)
.|..+++-|...+..+...+ |++++|.||||||+. +-++.... ...-+++.+--|.||-.++
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i-----------~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI-----------DSDERVITIEDTAELQLAH 216 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC-----------CCcccEEEEeehhhhccCC
Confidence 35677888999998888765 999999999999983 22222111 1223889888887776543
No 346
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.64 E-value=2.3 Score=42.86 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=32.4
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+..+++.+++|+|||...+-.+...+. .+.++++++.. +-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~------------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ------------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh------------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 44678899999999999864333333222 13467888743 3334555555544
No 347
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.57 E-value=1.1 Score=50.68 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.7
Q ss_pred EEEEccCCCCchHHHHH
Q 005837 308 CILADQSGSGKTLAYLL 324 (675)
Q Consensus 308 vii~apTGsGKTl~~ll 324 (675)
.++.||.|+|||.++..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999997654
No 348
>PTZ00293 thymidine kinase; Provisional
Probab=90.56 E-value=0.94 Score=44.82 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
|.=.++.||++||||.-.+-.+. .... .+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~-~y~~-----------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVK-RFTY-----------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHH-HHHH-----------cCCceEEEEec
Confidence 44467899999999975443332 2221 24478888884
No 349
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.54 E-value=1.4 Score=47.59 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=27.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
....+++||||+|.+. ......+.+.+...+....+|++|...
T Consensus 139 ~~~~kVviIDead~m~--~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMN--ANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcC--HHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4568899999999986 344445555666555455555555443
No 350
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=1.5 Score=46.88 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHhhcCCCCCCCcccCCCchhhhhccccccccCCCCC
Q 005837 3 GRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPV 49 (675)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (675)
|-.|..-+|++-+-.|---.+--++| +.--+||+|.++.-+|.+-
T Consensus 5 g~~~~ak~ar~~al~G~~d~~~~~~~--g~~~~~~r~l~s~~d~~~~ 49 (491)
T KOG0738|consen 5 GISENAKLAREYALLGNYDSAGIYYR--GLLYLMNRYLVSTGDPYAQ 49 (491)
T ss_pred hHHHHHHHHHHHHHhcCcchhHHHHH--hHHHHHHHHHhccCCcccc
Confidence 44455566666665553222222233 3446899999887776554
No 351
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.44 E-value=1.5 Score=49.59 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
+.++||.++++.-+.++++.|++.. +..+..+|++++..+|.+++....+|..+ |+|+|..+-. ..+.++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~----IVVGTrsalf-~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEIL----VVIGTRSALF-LPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCC----EEECChHHHc-CcccCCC
Confidence 5689999999999999999998753 14678899999999999999999988877 9999975433 3466777
Q ss_pred EEEE
Q 005837 609 HVVL 612 (675)
Q Consensus 609 ~VI~ 612 (675)
+||.
T Consensus 96 lIIV 99 (505)
T TIGR00595 96 LIIV 99 (505)
T ss_pred EEEE
Confidence 7775
No 352
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.30 E-value=1.9 Score=50.40 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.|.+.+.+++... .++++||.++.+..+.++...|++.... ..+..+|+++++.+|.+.+....+|+.+ |+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~G~~~----IV 244 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLRGQAR----VV 244 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhCCCCc----EE
Confidence 3666666666442 3668999999999999999999886531 3588899999999999999999999888 99
Q ss_pred EEcccccccCCCCCcCEEEE
Q 005837 593 VCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 593 VaT~~~~~GiDip~v~~VI~ 612 (675)
|.|..+-. .-+++...||.
T Consensus 245 iGtRSAvF-aP~~~LgLIIv 263 (665)
T PRK14873 245 VGTRSAVF-APVEDLGLVAI 263 (665)
T ss_pred EEcceeEE-eccCCCCEEEE
Confidence 99986443 33556677775
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.20 E-value=2.6 Score=44.41 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++|+|||+|.+.. .....+..++........+|+.+
T Consensus 101 ~~~~vviiDe~~~l~~--~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTS--DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCH--HHHHHHHHHHhcCCCCCeEEEEe
Confidence 3467999999998862 23345566666655566665544
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=0.86 Score=52.36 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.4
Q ss_pred CCEEEEccCCCCchHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l 327 (675)
..+|+.||.|+|||.++.+.+-
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999998765443
No 355
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.15 E-value=0.96 Score=52.82 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc-cccCCCCCc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA-SRGIDFAGV 607 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~-~~GiDip~v 607 (675)
+.+++|.++++.-|.+.++.++++... .++.+..+||+++..+|..+++...+|..+ |+|+|..+ ...+.+.++
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~----IiVgT~~ll~~~~~~~~l 358 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIH----LVVGTHALIQEKVEFKRL 358 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCC----EEEecHHHHhcccccccc
Confidence 568999999999999999999886532 247899999999999999999999999888 99999754 445777888
Q ss_pred CEEEE
Q 005837 608 DHVVL 612 (675)
Q Consensus 608 ~~VI~ 612 (675)
.+||.
T Consensus 359 ~lvVI 363 (630)
T TIGR00643 359 ALVII 363 (630)
T ss_pred ceEEE
Confidence 88775
No 356
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.04 E-value=3 Score=46.10 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~ 381 (675)
+..|.-+++.|++|+|||...+-.+.+.... .+..+++++-- .-..|+..++-.... +.+... ...
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~-----------~g~~v~~fSlE-m~~~~l~~Rl~~~~~-~v~~~~-~~~ 256 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR-----------EGKPVLFFSLE-MSAEQLGERLLASKS-GINTGN-IRT 256 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEEECC-CCHHHHHHHHHHHHc-CCCHHH-Hhc
Confidence 3456778899999999998655444433322 13356777622 223333333322111 111111 112
Q ss_pred CCcchHHHHHHhh------CCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 382 GGFRQKTQLENLQ------EGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 382 gg~~~~~~~~~l~------~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
|.... ..+..+. ....+.| .|.+.+...+++-......+++||||=.+.+.
T Consensus 257 ~~l~~-~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 257 GRFND-SDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred CCCCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 22221 2222111 1234444 34555554444311122358899999999886
No 357
>PF05729 NACHT: NACHT domain
Probab=89.92 E-value=2.5 Score=39.40 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=25.1
Q ss_pred EEEEcCcccccCCcc------HHHHHHHHHhh-CCCCccEEEEecCC
Q 005837 423 CAILDEVDILFNDED------FEVALQSLISS-SPVTAQYLFVTATL 462 (675)
Q Consensus 423 ~IVIDEaH~l~~~~~------~~~~l~~il~~-~~~~~qiI~lSAT~ 462 (675)
+||||-+|.+..... +...+..++.. .+++.++++.|.+-
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 599999999974222 33445555555 45567776666543
No 358
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.90 E-value=1.6 Score=42.52 Aligned_cols=143 Identities=15% Similarity=0.087 Sum_probs=73.0
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH-HHHHHHHHHhhcCCCCceEEEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA-SQVLSNCRSLSKCGVPFRSMVVT 381 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La-~Q~~~~l~~l~~~~~~~~v~~l~ 381 (675)
+...++++..++|-|||.+++--++..+. .+.+|+++.=.+--. .-=...+.++. .+.....-
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g------------~G~~V~ivQFlKg~~~~GE~~~l~~l~----~v~~~~~g 83 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG------------HGKKVGVVQFIKGAWSTGERNLLEFGG----GVEFHVMG 83 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH------------CCCeEEEEEEecCCCccCHHHHHhcCC----CcEEEECC
Confidence 34568999999999999998877776663 355788875332110 00011222211 12221111
Q ss_pred CCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccH--HHHHHHHHhhCCCCccEEEEe
Q 005837 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 382 gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~--~~~l~~il~~~~~~~qiI~lS 459 (675)
.+..... ...+--.......+.... ..+.-..+++||+||+-... ..++ ...+..++...+...-+|+.-
T Consensus 84 ~~~~~~~------~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al-~~gli~~eevi~~L~~rp~~~evVlTG 155 (191)
T PRK05986 84 TGFTWET------QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYAL-KYGYLDVEEVLEALNARPGMQHVVITG 155 (191)
T ss_pred CCCcccC------CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHH-HCCCccHHHHHHHHHcCCCCCEEEEEC
Confidence 1100000 000000000111111111 22334678999999997666 3333 456777788777666666555
Q ss_pred cCCCHHHHHH
Q 005837 460 ATLPVEIYNK 469 (675)
Q Consensus 460 AT~~~~v~~~ 469 (675)
-.+|.++.+.
T Consensus 156 R~~p~~Lie~ 165 (191)
T PRK05986 156 RGAPRELIEA 165 (191)
T ss_pred CCCCHHHHHh
Confidence 5667776543
No 359
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.87 E-value=1.4 Score=46.56 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=28.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
...++++|||+||.|. ..-...+.+.+..-+.+.-+|++|. -+..+.
T Consensus 106 ~~~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~-~~~~lL 152 (319)
T PRK06090 106 LNGYRLFVIEPADAMN--ESASNALLKTLEEPAPNCLFLLVTH-NQKRLL 152 (319)
T ss_pred cCCceEEEecchhhhC--HHHHHHHHHHhcCCCCCeEEEEEEC-ChhhCh
Confidence 4568999999999997 3344445555555554555555444 344433
No 360
>CHL00181 cbbX CbbX; Provisional
Probab=89.85 E-value=1.6 Score=45.51 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.1
Q ss_pred CCCEEEEccCCCCchHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp 325 (675)
+.++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999976543
No 361
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.75 E-value=1.2 Score=49.87 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.6
Q ss_pred CEEEEccCCCCchHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp 325 (675)
.+|++||.|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999976543
No 362
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.72 E-value=2.8 Score=44.21 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
++.+++.|++|+|||..+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998543
No 363
>PRK06904 replicative DNA helicase; Validated
Probab=89.56 E-value=4.6 Score=45.35 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=57.0
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEE
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~ 381 (675)
+..|.=+|+.|.+|.|||.-++-.+.+.... .+..++|++.- .-..|+..++-.... +.+... +..
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-----------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s-~v~~~~-i~~ 283 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-----------SEKPVLVFSLE-MPAEQIMMRMLASLS-RVDQTK-IRT 283 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-----------cCCeEEEEecc-CCHHHHHHHHHHhhC-CCCHHH-hcc
Confidence 3445667889999999998543333332222 13356666543 234444444332211 111111 112
Q ss_pred CCcchHHHHH-------HhhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 382 GGFRQKTQLE-------NLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 382 gg~~~~~~~~-------~l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
|..-....+. .+.....+.| .|+..+....++-......+++||||-.+.+.
T Consensus 284 g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 284 GQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 2122222222 2223344555 35666654443311122358899999998885
No 364
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.49 E-value=0.8 Score=48.15 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=36.0
Q ss_pred ChHHHHHHhhhhh-cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 291 PSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 291 ~~~iQ~~~i~~il-~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
+++.|.+.+..++ .+.+++++|+||||||... -.++..+... ....+++++-...|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~---------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN---------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc---------CCCceEEEECCchhhc
Confidence 3344555555444 5679999999999999853 2333333221 1234788888777763
No 365
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.48 E-value=6.5 Score=37.17 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=38.1
Q ss_pred cccccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHH
Q 005837 416 LQLINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (675)
Q Consensus 416 ~~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~ 469 (675)
.....++++|+||+-.... +.--...+..+++..+...-+|+.+-.+|.++...
T Consensus 91 ~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 91 IASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 3456789999999976652 23335567778888887777777776778776553
No 366
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.16 E-value=1.6 Score=49.57 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=59.5
Q ss_pred eEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----ccccc-CCCC
Q 005837 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASRG-IDFA 605 (675)
Q Consensus 532 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~G-iDip 605 (675)
+||+++|++-|.++++.+..+.....++.++.++|+++...+...++. | .+ |||||. .+.++ +++.
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~----ivVaTPGRllD~i~~~~l~l~ 173 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VD----IVVATPGRLLDLIKRGKLDLS 173 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CC----EEEECccHHHHHHHcCCcchh
Confidence 999999999999999999988754435789999999998887765554 5 56 999997 34555 8888
Q ss_pred CcCEEEE
Q 005837 606 GVDHVVL 612 (675)
Q Consensus 606 ~v~~VI~ 612 (675)
.++++|.
T Consensus 174 ~v~~lVl 180 (513)
T COG0513 174 GVETLVL 180 (513)
T ss_pred hcCEEEe
Confidence 9999886
No 367
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.05 E-value=2.4 Score=43.42 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=58.7
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc---HHHHHHHHHHHHHhhcCCCCceEEEE
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT---AELASQVLSNCRSLSKCGVPFRSMVV 380 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt---r~La~Q~~~~l~~l~~~~~~~~v~~l 380 (675)
.|.=++|.|.+|.|||..++-.+.+.+... +..++|++.- .+++..+....... +. ..+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-----------~~~vly~SlEm~~~~l~~R~la~~s~v-----~~--~~i 79 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-----------GYPVLYFSLEMSEEELAARLLARLSGV-----PY--NKI 79 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-----------SSEEEEEESSS-HHHHHHHHHHHHHTS-----TH--HHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-----------CCeEEEEcCCCCHHHHHHHHHHHhhcc-----hh--hhh
Confidence 345688899999999986655555554331 3578888753 34444333332221 11 001
Q ss_pred ECCcchHHHHHH-------hhCCCcEEE-e----CHHHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 381 TGGFRQKTQLEN-------LQEGVDVLI-A----TPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 381 ~gg~~~~~~~~~-------l~~~~~IlV-~----Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
..+.-....+.. +.. ..+.| . |++.|...++.-......+++||||=.|.+..
T Consensus 80 ~~g~l~~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 80 RSGDLSDEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HCCGCHHHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred hccccCHHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 112111222221 222 22333 2 55566655554222236789999999998874
No 368
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.02 E-value=2.2 Score=44.48 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 35799999999999987633
No 369
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.97 E-value=1.2 Score=47.46 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.5
Q ss_pred ChHHHHHHhhhhh----cC---CCEEEEccCCCCchHHHHHHH
Q 005837 291 PSQIQAMAFPPVV----EG---KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 291 ~~~iQ~~~i~~il----~g---~dvii~apTGsGKTl~~llp~ 326 (675)
++|||...+..+. ++ .-.++.||.|.||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 4577777776654 33 357799999999998765433
No 370
>PRK04328 hypothetical protein; Provisional
Probab=88.91 E-value=1.4 Score=45.09 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=33.4
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|..+++.|++|+|||.-.+..+.+.+.+ +..++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~------------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM------------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc------------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35678999999999998554444444432 33667766 3334455666666653
No 371
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.89 E-value=3 Score=48.39 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhh---hcCCCEEEEccCCCCchHHHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---VEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~i---l~g~dvii~apTGsGKTl~~ll 324 (675)
..++++-..+..++.+... .-+.. ..++-+++.||+|+|||.++.+
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHHH
Confidence 5677777777666554421 11111 1234489999999999996544
No 372
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.88 E-value=2.8 Score=40.61 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=24.6
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ......+...+...+...-+|+++
T Consensus 94 ~~~~kviiide~~~l~--~~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN--EAAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEE
Confidence 4568899999999996 223344555555544444444443
No 373
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.86 E-value=2.2 Score=48.13 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=37.2
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|..+++.+|+|+|||+..+..+...+. .+.+++|++ .-|-..|+.+++..++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~------------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA------------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3567899999999999965554444332 244778876 5566778888887764
No 374
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=0.3 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.5
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
+..|+++.||||||||+.++.
T Consensus 96 ~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeccEEEECCCCCcHHHHHHH
Confidence 346899999999999997654
No 375
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=88.70 E-value=2 Score=48.09 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=81.5
Q ss_pred CChHHHHHHhhhhhc------C----CCEEEEccCCCCchHHHH-HHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 290 RPSQIQAMAFPPVVE------G----KSCILADQSGSGKTLAYL-LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~------g----~dvii~apTGsGKTl~~l-lp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
.+-|||.-++-.++. + +..+|..|-+-|||..+. +.+...+... ..+-.+.|++|+.+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---------RSGAGIYILAPSVEQA 131 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---------hcCCcEEEEeccHHHH
Confidence 456999999988873 1 357899999999998544 2222222221 3456899999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHH---HHHHh--cccccccceEEEEcCccccc
Q 005837 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM---FLIKE--GILQLINLRCAILDEVDILF 433 (675)
Q Consensus 359 ~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~---~~l~~--~~~~l~~i~~IVIDEaH~l~ 433 (675)
.+.+..++........+.. . .....+-...+..... ..+.. ...+-.+..+.|+||.|...
T Consensus 132 ~~~F~~ar~mv~~~~~l~~---------~-----~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 132 ANSFNPARDMVKRDDDLRD---------L-----CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHhhHHHHHHHHhCcchhh---------h-----hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc
Confidence 8888887775443111110 0 0001111112222111 11111 23445567799999999887
Q ss_pred CCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 434 NDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 434 ~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
+...+...++.-+.. .++.+++..|.
T Consensus 198 ~~~~~~~~~~~g~~a-r~~~l~~~ITT 223 (546)
T COG4626 198 KQEDMYSEAKGGLGA-RPEGLVVYITT 223 (546)
T ss_pred CHHHHHHHHHhhhcc-CcCceEEEEec
Confidence 211222222222222 24567777765
No 376
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.67 E-value=1.1 Score=48.62 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=33.3
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|.-+++.|++|+|||...+..+.... . .+.+++|+.-. +-..|+..+..+++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a-~-----------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA-K-----------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-h-----------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 356788999999999986544333222 1 13478888654 33456666666554
No 377
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=88.67 E-value=2.2 Score=51.81 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccccCCCCCc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASRGIDFAGV 607 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~GiDip~v 607 (675)
+.+++|.++|+.-|.+.++.+++.... ..+.+..+++..+..++.++++.+.+|..+ |+|+|.. +...+.+.++
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d----IVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKID----ILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCce----EEEchHHHhhCCCCcccC
Confidence 468999999999999999999886533 347888999999999999999999999887 9999974 4456788888
Q ss_pred CEEEE
Q 005837 608 DHVVL 612 (675)
Q Consensus 608 ~~VI~ 612 (675)
.+||.
T Consensus 575 ~llVI 579 (926)
T TIGR00580 575 GLLII 579 (926)
T ss_pred CEEEe
Confidence 88775
No 378
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.64 E-value=1.1 Score=44.79 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.++|++||.|.|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4699999999999985543
No 379
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.54 E-value=1.7 Score=49.80 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=26.0
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
...+++||||+|.|. . .-...+...+...+...-+|++| |-+..+.
T Consensus 118 ~~~KVIIIDEad~Lt-~-~A~NaLLKtLEEPp~~tvfIL~T-t~~~KLl 163 (605)
T PRK05896 118 FKYKVYIIDEAHMLS-T-SAWNALLKTLEEPPKHVVFIFAT-TEFQKIP 163 (605)
T ss_pred CCcEEEEEechHhCC-H-HHHHHHHHHHHhCCCcEEEEEEC-CChHhhh
Confidence 457899999999986 2 22334444445444444444444 5444443
No 380
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=2.3 Score=49.23 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.6
Q ss_pred CEEEEccCCCCchHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp 325 (675)
..|+.||.|+|||.++...
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4589999999999976554
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.44 E-value=3.1 Score=41.88 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
|.-+++.|++|+|||.-....+...+. .+.+++++.-.. -..++.+++.+++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~------------~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK------------QGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh------------CCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 567888999999999865444443332 244777776543 3345666666653
No 382
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.39 E-value=2.5 Score=49.46 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=26.4
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~ 467 (675)
....+++||||||.|. .. -...+.+.+...+....+|+ .+|-+..+.
T Consensus 116 ~g~~KV~IIDEa~~LT-~~-A~NALLKtLEEPP~~tifIL-aTte~~KLl 162 (725)
T PRK07133 116 QSKYKIYIIDEVHMLS-KS-AFNALLKTLEEPPKHVIFIL-ATTEVHKIP 162 (725)
T ss_pred cCCCEEEEEEChhhCC-HH-HHHHHHHHhhcCCCceEEEE-EcCChhhhh
Confidence 4678899999999987 22 23334444444444444444 334444443
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.33 E-value=2.2 Score=40.87 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=35.6
Q ss_pred ccccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHH
Q 005837 417 QLINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~ 469 (675)
.-..+++||+||+-.... +.--...+..+++..+...-+|+..-.+|.++...
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 346789999999976552 22224567777888877777766656677776543
No 384
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.31 E-value=2.4 Score=48.10 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=27.6
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++++||||||.|. ..-...+.+.+...+....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt--~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLT--KEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCC--HHHHHHHHHHHhhcCCceEEEEEE
Confidence 4578999999999997 333344555566666666766655
No 385
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.30 E-value=3.3 Score=45.27 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=29.6
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~ 471 (675)
....+++||||+|.|. ......+.+.+..-+.... +++++|-+..+..-+.
T Consensus 115 ~~~~kViiIDead~m~--~~aanaLLk~LEep~~~~~-fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLT--ERAANALLKAVEEPPPRTV-WLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcC--HHHHHHHHHHhhcCCCCCe-EEEEECChHHChHHHH
Confidence 4568899999999996 2333444445554444444 4455554555444333
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.09 E-value=3.1 Score=48.17 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=24.0
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ...+ ..+.+.+...+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt-~~a~-naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLS-TAAF-NAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcC-HHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 4678899999999997 2222 33444444444444445444
No 387
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.94 E-value=1.1 Score=48.39 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.5
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLR 331 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~ 331 (675)
+..++++||||||||... -.+++++.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 346899999999999853 33445543
No 388
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.72 E-value=1.7 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.3
Q ss_pred CEEEEccCCCCchHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~ 326 (675)
..|+.||.|+|||.++...+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999876543
No 389
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.69 E-value=2.5 Score=47.64 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
.+.+++.||+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999854
No 390
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.62 E-value=8.1 Score=44.28 Aligned_cols=92 Identities=13% Similarity=0.199 Sum_probs=55.7
Q ss_pred HHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCC--CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEc--cc
Q 005837 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET--RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT--DR 597 (675)
Q Consensus 522 ~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~--~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT--~~ 597 (675)
+++..-+ +.+++|.+|.+-...+.+.++..+.-.. +-+-+++-..-+ -..+++.|....-.|.-.+|+|. .-
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 3333344 7899999999998888888875432110 011222222222 35566666554332222355554 67
Q ss_pred ccccCCCCC--cCEEEEcCCCC
Q 005837 598 ASRGIDFAG--VDHVVLFDFPR 617 (675)
Q Consensus 598 ~~~GiDip~--v~~VI~~d~p~ 617 (675)
++.|||+.+ .+.||..++|.
T Consensus 699 lSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred cccccccccccccEEEEeecCC
Confidence 889999977 78899988774
No 391
>PRK08840 replicative DNA helicase; Provisional
Probab=87.42 E-value=6.8 Score=43.86 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=56.5
Q ss_pred hhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEE
Q 005837 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (675)
Q Consensus 299 i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~ 378 (675)
+.-+..|.=+|+.|.+|.|||.-++-.+.+.... .+..++|++.-- -..|+..++-.... ++...
T Consensus 211 ~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-----------~~~~v~~fSlEM-s~~ql~~Rlla~~s---~v~~~ 275 (464)
T PRK08840 211 TAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-----------QDKPVLIFSLEM-PAEQLMMRMLASLS---RVDQT 275 (464)
T ss_pred hcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-----------CCCeEEEEeccC-CHHHHHHHHHHhhC---CCCHH
Confidence 3334456668889999999998654333333222 133566665432 23344433322111 11111
Q ss_pred EEECCcchHHHHHH-------hhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 379 VVTGGFRQKTQLEN-------LQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 379 ~l~gg~~~~~~~~~-------l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
.+..+.-....+.. +.....+.| .|...+....++-......+++||||-.|.|.
T Consensus 276 ~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 276 KIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 11112222222322 212234444 24455543333211112358899999999885
No 392
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.28 E-value=4.9 Score=40.64 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=26.7
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
-.++.||.|+|||...+-.++........-+.......+.+|+|++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 4688999999999976655554332211111001112356888888
No 393
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.22 E-value=1.1 Score=48.21 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=18.7
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l 330 (675)
.+..++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567999999999999854 2344444
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.09 E-value=0.84 Score=50.49 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred hHHHHHHhhhhhcCCC--EEEEccCCCCchHHHHHHHHHHHHH
Q 005837 292 SQIQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQ 332 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~d--vii~apTGsGKTl~~llp~l~~l~~ 332 (675)
.+.|.+.+..+++... +++.||||||||.+ +..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5677777877776544 66789999999986 3445555543
No 395
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.95 E-value=0.8 Score=49.02 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=29.2
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
+..+.+++++|+||||||... -.++..+ ....+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i------------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI------------PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc------------CCCCCEEEECCCcccc
Confidence 446789999999999999842 2223222 1234677777777664
No 396
>PRK07004 replicative DNA helicase; Provisional
Probab=86.86 E-value=3.5 Score=46.15 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=54.7
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhhcCCCCceEEEE-
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSKCGVPFRSMVV- 380 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~-~l~~~~~~~~v~~l- 380 (675)
..|.-+++.|.+|+|||.-++--+.+...+ .+..+++++. ..-..|+..++- ..+. +....+
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~-----------~~~~v~~fSl-EM~~~ql~~R~la~~~~----v~~~~i~ 274 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVE-----------YGLPVAVFSM-EMPGTQLAMRMLGSVGR----LDQHRMR 274 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHH-----------cCCeEEEEeC-CCCHHHHHHHHHHhhcC----CCHHHHh
Confidence 345668889999999998654433333222 1335666643 222333333332 2211 111111
Q ss_pred ECCcchHHHHH-------HhhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 381 TGGFRQKTQLE-------NLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 381 ~gg~~~~~~~~-------~l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
.|.. ....+. .+. ...+.| .|+..+....++-......+++||||=.+.+.
T Consensus 275 ~g~l-~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 275 TGRL-TDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred cCCC-CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2222 222222 222 244555 35555554433311122357899999999886
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.81 E-value=2.3 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.7
Q ss_pred hcCCCEEEEccCCCCchHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~l 323 (675)
-.|+.+.|.||+|+|||....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCCEEEEECCCCCChhHHHH
Confidence 358899999999999998543
No 398
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=86.55 E-value=9.8 Score=40.52 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=52.5
Q ss_pred EEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH-HHHHHH---HHHHHhhcCCCCceEEEEECCc
Q 005837 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVL---SNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 309 ii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~-La~Q~~---~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
++.++-|+|||.+..+.++..+...+ ....++++ ++.. +...+. ..+..+......+.........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~---------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP---------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS---------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC---------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc
Confidence 46789999999987776666665421 12355555 6654 444322 2333332211111111011110
Q ss_pred chHHHHHHhhCCCcEEEeCHHHH--HHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCC
Q 005837 385 RQKTQLENLQEGVDVLIATPGRF--MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (675)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~Tp~~L--~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~ 450 (675)
- .+.++..|.+.+-..- ..-+ .-..+.++++||+-.+. +..+...+........
T Consensus 71 ~------~~~nG~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~-~~~~~~~~~~~~~~~~ 126 (384)
T PF03237_consen 71 I------ILPNGSRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVP-DDAFSELIRRLRATWG 126 (384)
T ss_dssp E------EETTS-EEEEES-----SHHHH-----HTS--SEEEEESGGGST-THHHHHHHHHHHHCST
T ss_pred E------EecCceEEEEeccccccccccc-----cccccceeeeeecccCc-hHHHHHHHHhhhhccc
Confidence 0 0133455666664321 1111 12557799999998776 3344444544444443
No 399
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=5.4 Score=44.34 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=43.2
Q ss_pred cccCCCHHHHHHHHHCCCCCChHHHHHHhhh----hh---c----C-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhcc
Q 005837 271 KELGCSDYMIESLKRQNFLRPSQIQAMAFPP----VV---E----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338 (675)
Q Consensus 271 ~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~----il---~----g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~ 338 (675)
..+|.+++.++.+...|+....+--.+++.. +. . + .++++.+|.|||||..+.-.++
T Consensus 492 PAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------- 560 (744)
T KOG0741|consen 492 PAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------- 560 (744)
T ss_pred cccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh-----------
Confidence 4567888888888777654433333333322 11 1 1 3689999999999974433222
Q ss_pred CCCCCCCCEEEEEcCc
Q 005837 339 SKSTSGSPRVVILAPT 354 (675)
Q Consensus 339 ~~~~~~~~~vLVl~Pt 354 (675)
...-|.+=|++|.
T Consensus 561 ---~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 561 ---SSDFPFVKIISPE 573 (744)
T ss_pred ---hcCCCeEEEeChH
Confidence 1446788888884
No 400
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.49 E-value=6.1 Score=38.15 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=35.3
Q ss_pred cccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 418 LINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
-..+++||+||+-..+. +.--...+..++...|....+|+..-..|+.+.+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 34699999999976652 222345677778877766666655556677766543
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.43 E-value=4 Score=40.76 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=33.3
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|..+++.|++|+|||...+-.+...+.. +..+++++-.. -..++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~------------g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN------------GEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC------------CCeEEEEECCC-CHHHHHHHHHHcC
Confidence 35678899999999987544334433322 34677776533 4566666666653
No 402
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.43 E-value=13 Score=39.21 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=73.4
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc-C-cHHHHHHHHHHHHHhhcCCCCceEEEE-ECC
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA-P-TAELASQVLSNCRSLSKCGVPFRSMVV-TGG 383 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~-P-tr~La~Q~~~~l~~l~~~~~~~~v~~l-~gg 383 (675)
.++++|-.|+|||++.-=. .+.... .+.++++.+ - .|+-|.+|.+.|-+-. ++.+..- .|+
T Consensus 141 Vil~vGVNG~GKTTTIaKL--A~~l~~----------~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKL--AKYLKQ----------QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhHHHHH--HHHHHH----------CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCC
Confidence 4677999999999974332 222222 234555554 2 4555555554444332 1222221 222
Q ss_pred cchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCc------cEEE
Q 005837 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA------QYLF 457 (675)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~------qiI~ 457 (675)
.+.. ...+-++. -.-++++++++|=|-++-+..+....+++|.+...+.. -++.
T Consensus 205 DpAa------------------VafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv 264 (340)
T COG0552 205 DPAA------------------VAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV 264 (340)
T ss_pred CcHH------------------HHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE
Confidence 1111 11222222 13456889999999999877778888888877766543 3445
Q ss_pred EecCCCHHHHHHHHH
Q 005837 458 VTATLPVEIYNKLVE 472 (675)
Q Consensus 458 lSAT~~~~v~~~l~~ 472 (675)
+=||.-.+-.+....
T Consensus 265 lDAttGqnal~QAk~ 279 (340)
T COG0552 265 LDATTGQNALSQAKI 279 (340)
T ss_pred EEcccChhHHHHHHH
Confidence 579887776555543
No 403
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.35 E-value=3.2 Score=49.24 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=17.3
Q ss_pred CCCEEEEccCCCCchHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp 325 (675)
..++++.||+|+|||..+...
T Consensus 207 ~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 468999999999999975443
No 404
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=86.29 E-value=5.2 Score=44.40 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=55.0
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
..|.-++|.|++|+|||.-.+--+.+.... .+..+++++.-- -..|+..++..... +.+... ...|
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-----------~g~~vl~~SlEm-~~~~i~~R~~~~~~-~v~~~~-~~~g 258 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIK-----------EGKPVAFFSLEM-SAEQLAMRMLSSES-RVDSQK-LRTG 258 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh-----------CCCeEEEEeCcC-CHHHHHHHHHHHhc-CCCHHH-hccC
Confidence 345678889999999998554434433322 133567765322 23333334333221 111111 1122
Q ss_pred CcchHHHH-------HHhhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 383 GFRQKTQL-------ENLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 383 g~~~~~~~-------~~l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
.... ..+ ..+.. ..+.| .|+..+...+++-.. -..+++||||=.+.+.
T Consensus 259 ~l~~-~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 259 KLSD-EDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMS 318 (434)
T ss_pred CCCH-HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 2222 122 12222 23444 255556544433111 1347899999998875
No 405
>PRK08506 replicative DNA helicase; Provisional
Probab=86.17 E-value=5.2 Score=44.96 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=56.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
..|.-+++.|.+|.|||.-++--+.+.+ . .+..++|++.- .-..|+..++-.... +.++.. +..|
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~-~-----------~g~~V~~fSlE-Ms~~ql~~Rlla~~s-~v~~~~-i~~~ 254 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKAL-N-----------QDKGVAFFSLE-MPAEQLMLRMLSAKT-SIPLQN-LRTG 254 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHH-h-----------cCCcEEEEeCc-CCHHHHHHHHHHHhc-CCCHHH-HhcC
Confidence 3456688899999999986554444432 1 13356666542 234444444432211 111111 1122
Q ss_pred CcchHHHHH-------HhhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 383 GFRQKTQLE-------NLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 383 g~~~~~~~~-------~l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
... ...+. .+.. ..+.| .|+..+...+++-......+++||||=.+.|.
T Consensus 255 ~l~-~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 255 DLD-DDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCC-HHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 222 22222 2222 23444 35566654444311112358899999999886
No 406
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=6.7 Score=42.24 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=26.9
Q ss_pred EEEEcCcccccC-------CccHHHHHHHHHhhC-CCCccEEEEecCCCHHHH
Q 005837 423 CAILDEVDILFN-------DEDFEVALQSLISSS-PVTAQYLFVTATLPVEIY 467 (675)
Q Consensus 423 ~IVIDEaH~l~~-------~~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~v~ 467 (675)
++.|||||.++. ....+..+..++-.. .....++++=||-.+..+
T Consensus 446 llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDL 498 (630)
T ss_pred EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccch
Confidence 789999997653 122333444444333 345677888888655433
No 407
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=20 Score=37.20 Aligned_cols=54 Identities=20% Similarity=0.434 Sum_probs=33.1
Q ss_pred hhhhhcC-----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 299 FPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 299 i~~il~g-----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
+|.+..| +-+++-+|.|+||+..+ ..+..+ ..-+.+-+.+..|+..|.-+-.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLA-----KAVATE-----------AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLA-----KAVATE-----------ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHH-----HHHHhh-----------cCCceEEeehHHHHHHHhccHHHH
Confidence 3555655 35899999999998632 122211 114677778888887665444443
No 408
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.94 E-value=4.9 Score=46.12 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.7
Q ss_pred CEEEEccCCCCchHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp 325 (675)
-.++.||.|.|||.++...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999976553
No 409
>PF12846 AAA_10: AAA-like domain
Probab=85.93 E-value=0.92 Score=47.11 Aligned_cols=43 Identities=30% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
+.+++|.|+||+|||......+.+.+. .+..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~------------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIR------------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH------------cCCCEEEEcCCchHHH
Confidence 358999999999999877644433332 2457788877655444
No 410
>PRK08006 replicative DNA helicase; Provisional
Probab=85.91 E-value=9.5 Score=42.80 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=56.6
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEE-
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV- 380 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l- 380 (675)
+..|.-++|.|.+|.|||.-++-.+.+.... .+..++|++.- .-..|+..++-.... .+....+
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~-----------~g~~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~ 285 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML-----------QDKPVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIR 285 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhh
Confidence 3445667889999999998654444433322 13356666542 223333333332111 1111111
Q ss_pred ECCcchHHHHHH-------hhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 381 TGGFRQKTQLEN-------LQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 381 ~gg~~~~~~~~~-------l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
.|... ...|.. +.....+.| .|+..+....++-......+++||||=.|.+.
T Consensus 286 ~~~l~-~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 286 TGQLD-DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred cCCCC-HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 22222 222322 212334444 35666654443311112358899999999885
No 411
>PRK05748 replicative DNA helicase; Provisional
Probab=85.88 E-value=5.3 Score=44.58 Aligned_cols=114 Identities=13% Similarity=0.087 Sum_probs=55.6
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH-HhhcCCCCceEEEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSKCGVPFRSMVVT 381 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~-~l~~~~~~~~v~~l~ 381 (675)
..|.-++|.|.+|.|||.-.+-.+.+...+ .+..+++++. ..-..|+..++- ..+. ..... ...
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~-----------~g~~v~~fSl-Ems~~~l~~R~l~~~~~--v~~~~-i~~ 265 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK-----------TDKNVAIFSL-EMGAESLVMRMLCAEGN--IDAQR-LRT 265 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh-----------CCCeEEEEeC-CCCHHHHHHHHHHHhcC--CCHHH-hhc
Confidence 345678889999999998554433332222 1335666653 223444444442 2221 11110 111
Q ss_pred CCcchHHHHH-------HhhCCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 382 GGFRQKTQLE-------NLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 382 gg~~~~~~~~-------~l~~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
|... ...+. .+. ...+.| .|++.+...+++-......+++||||=.+.+.
T Consensus 266 ~~l~-~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 266 GQLT-DDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CCCC-HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2222 22222 222 233444 25555654443311111268899999999885
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.88 E-value=2 Score=45.87 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.3
Q ss_pred hhcCCCEEEEccCCCCchHH
Q 005837 302 VVEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~ 321 (675)
+..+.+++|+|+||||||..
T Consensus 157 v~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH
Confidence 34578999999999999984
No 413
>PRK10689 transcription-repair coupling factor; Provisional
Probab=85.83 E-value=2.7 Score=52.22 Aligned_cols=80 Identities=8% Similarity=0.105 Sum_probs=65.0
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccccCCCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASRGIDFAG 606 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~GiDip~ 606 (675)
.+.+++|.++++.-|.++++.+++.... ..+.+..+++..+..++..+++...+|..+ |+|+|.. +...+.+.+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~d----IVVgTp~lL~~~v~~~~ 722 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKID----ILIGTHKLLQSDVKWKD 722 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCC----EEEECHHHHhCCCCHhh
Confidence 3568999999999999999998875422 236788899999999999999999988887 9999964 444567778
Q ss_pred cCEEEE
Q 005837 607 VDHVVL 612 (675)
Q Consensus 607 v~~VI~ 612 (675)
+.+||.
T Consensus 723 L~lLVI 728 (1147)
T PRK10689 723 LGLLIV 728 (1147)
T ss_pred CCEEEE
Confidence 888775
No 414
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.78 E-value=6.7 Score=43.28 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCc-eEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc--ccc----cc
Q 005837 529 VSK-TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD--RAS----RG 601 (675)
Q Consensus 529 ~~k-~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~--~~~----~G 601 (675)
.++ .+|.|+|++-|.++...-++++ +..++++.++||+++.-++...++ .|. . ++|||. .+. .+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~-K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~-E----ivVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFG-KAYGLRVVAVYGGGSKWEQSKELK---EGA-E----IVVATPGRLIDMVKMKA 365 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhh-hhccceEEEeecCCcHHHHHHhhh---cCC-e----EEEechHHHHHHHHhhc
Confidence 455 5677999999999988877776 345689999999999988877665 443 2 999996 222 47
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+|+.+|.++|+
T Consensus 366 tn~~rvS~LV~ 376 (731)
T KOG0339|consen 366 TNLSRVSYLVL 376 (731)
T ss_pred ccceeeeEEEE
Confidence 78888888765
No 415
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.76 E-value=2.3 Score=42.09 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=25.0
Q ss_pred eEEEEcCccccc-C---CccHHHHHHHHHhhCCC-CccEEEEecCC
Q 005837 422 RCAILDEVDILF-N---DEDFEVALQSLISSSPV-TAQYLFVTATL 462 (675)
Q Consensus 422 ~~IVIDEaH~l~-~---~~~~~~~l~~il~~~~~-~~qiI~lSAT~ 462 (675)
-+|||||+|.+. . ...+...+..++..... ....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 2 34566667777666322 22334456554
No 416
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=85.75 E-value=3.7 Score=45.82 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=24.5
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.+. ..-...+.+.+...+....+|+.|
T Consensus 119 ~~~~kvvIIdead~lt--~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 119 KSRYKIYIIDEVHMLT--KEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred cCCCEEEEEecHHhhC--HHHHHHHHHHhhcCCCCceEEEEe
Confidence 3567899999999996 222334455555544455555444
No 417
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=85.72 E-value=0.47 Score=51.80 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=37.4
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
+++++|+||||||.++++|.+... +..++|+=|.-++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999988866321 246888899999998777666654
No 418
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.71 E-value=2.8 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.6
Q ss_pred CCEEEEccCCCCchHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~ 326 (675)
...|+.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357999999999999765533
No 419
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.38 E-value=0.98 Score=42.41 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
..++|.++.|+|||...+ -+...+.+..+ ...-|++| .+++=++ ..++++..+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~-ki~e~L~~~g~----------kvgGf~t~----------EVR~gGk-R~GF~Ivdl~tg~~ 63 (179)
T COG1618 6 MKIFITGRPGVGKTTLVL-KIAEKLREKGY----------KVGGFITP----------EVREGGK-RIGFKIVDLATGEE 63 (179)
T ss_pred eEEEEeCCCCccHHHHHH-HHHHHHHhcCc----------eeeeEEee----------eeecCCe-EeeeEEEEccCCce
Confidence 468999999999998643 34455554321 24456666 2333222 24555555553322
Q ss_pred hHHHHHHhh----CCCcEEEeCHHHHH-HHHHhcccccccceEEEEcCcccccC-CccHHHHHHHHHhhCC
Q 005837 386 QKTQLENLQ----EGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFN-DEDFEVALQSLISSSP 450 (675)
Q Consensus 386 ~~~~~~~l~----~~~~IlV~Tp~~L~-~~l~~~~~~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~ 450 (675)
..-...... ..+.+.+---+.+. ..+++ .+..-+++||||+--|.- ...|...+..+++.-.
T Consensus 64 ~~la~~~~~~~rvGkY~V~v~~le~i~~~al~r---A~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k 131 (179)
T COG1618 64 GILARVGFSRPRVGKYGVNVEGLEEIAIPALRR---ALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK 131 (179)
T ss_pred EEEEEcCCCCcccceEEeeHHHHHHHhHHHHHH---HhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence 111000000 01112221122111 22222 123357999999987643 4567888888876544
No 420
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.35 E-value=2.9 Score=49.01 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=35.6
Q ss_pred eEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
=++|+|+.|.+. +......++.++++.+.+..+++.|=+-|
T Consensus 131 l~LVlDDyHli~-~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLIS-DPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccC-cccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 489999999998 66777889999999999999999986643
No 421
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.28 E-value=0.62 Score=44.71 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=28.2
Q ss_pred HhhCCCcEEEeCHHHHHHHHHhccc--ccccceEEEEcCcccccC
Q 005837 392 NLQEGVDVLIATPGRFMFLIKEGIL--QLINLRCAILDEVDILFN 434 (675)
Q Consensus 392 ~l~~~~~IlV~Tp~~L~~~l~~~~~--~l~~i~~IVIDEaH~l~~ 434 (675)
.....++|+|+++..|++-.....+ ...+-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3345689999999998754333222 123456899999999873
No 422
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=85.16 E-value=17 Score=34.78 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred cccccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHH
Q 005837 416 LQLINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (675)
Q Consensus 416 ~~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~ 469 (675)
+.-..+++||+||+-.... +.--...+..++...+...-+|+.--.+|+++...
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 3456799999999976652 22234567777887776777666555667666543
No 423
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.09 E-value=1.9 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.++++.||.|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999997543
No 424
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.06 E-value=2.6 Score=46.32 Aligned_cols=140 Identities=14% Similarity=-0.015 Sum_probs=77.3
Q ss_pred ChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc
Q 005837 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~ 370 (675)
+-..|.++.-..-.|.. .|.|=.|||||....+-+.....+ ...-+++|.+=|+.|++++...+.++.-
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k----------nPd~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK----------NPDSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC----------CCCceEEEEeehHHHHHHHHHHHHHHHH
Confidence 34567777655555655 778899999999655433322222 2345899999999999999888887642
Q ss_pred C----CCCc---eEEEEECCcchHHHHHH---hhCCCcEEEeC----HHHHHHHHHhcccccccceEEEEcCcccccCCc
Q 005837 371 C----GVPF---RSMVVTGGFRQKTQLEN---LQEGVDVLIAT----PGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (675)
Q Consensus 371 ~----~~~~---~v~~l~gg~~~~~~~~~---l~~~~~IlV~T----p~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~ 436 (675)
. ..++ .+.--.||.+....... ...-..+-++- .......+-+......-+++|.|||++-.. .
T Consensus 232 ~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP--~ 309 (660)
T COG3972 232 MRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFP--Q 309 (660)
T ss_pred HHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCC--H
Confidence 1 1222 23333455443322111 11111222221 111222222223346679999999998765 3
Q ss_pred cHHHHHH
Q 005837 437 DFEVALQ 443 (675)
Q Consensus 437 ~~~~~l~ 443 (675)
+|....-
T Consensus 310 ~F~~Lcf 316 (660)
T COG3972 310 SFIDLCF 316 (660)
T ss_pred HHHHHHH
Confidence 4444433
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.03 E-value=5.6 Score=47.37 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=29.8
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
.+|++++-.+...+.++++ .+.++..++... +..++.+++.||+|+|||..+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 4677776555555555432 222222222211 123578999999999999853
No 426
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.99 E-value=3.8 Score=47.71 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----cccc-c
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASR-G 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~-G 601 (675)
...++||.|++++-|.++++.+..+.....++.+..+||+.+...+...+ .. ..+ |+|+|. .+.+ .
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~-~~~----IVVgTPgrl~d~l~r~~ 144 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQ-GPQ----IVVGTPGRLLDHLKRGT 144 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cC-CCC----EEEECHHHHHHHHHcCC
Confidence 34579999999999999999988775444457889999998766554433 22 244 999994 2333 3
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++.+||.
T Consensus 145 l~l~~l~~lVl 155 (629)
T PRK11634 145 LDLSKLSGLVL 155 (629)
T ss_pred cchhhceEEEe
Confidence 67888888775
No 427
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.99 E-value=6 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=17.3
Q ss_pred CCEEEEccCCCCchHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~ 326 (675)
.|+++.||+|+|||..+...+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la 224 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLA 224 (731)
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 689999999999999754433
No 428
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.96 E-value=5.7 Score=48.07 Aligned_cols=20 Identities=25% Similarity=0.208 Sum_probs=16.7
Q ss_pred CCEEEEccCCCCchHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp 325 (675)
.++++.||+|+|||......
T Consensus 200 ~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 58999999999999976443
No 429
>PHA00012 I assembly protein
Probab=84.92 E-value=10 Score=39.93 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=28.4
Q ss_pred ccccceEEEEcCcccccCCccHH----HHHHH-HHhhCCCCccEEEEecCC
Q 005837 417 QLINLRCAILDEVDILFNDEDFE----VALQS-LISSSPVTAQYLFVTATL 462 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~----~~l~~-il~~~~~~~qiI~lSAT~ 462 (675)
+...-.++||||||..+....+. ..+.. +........-++++|-.+
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~p 128 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDI 128 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCH
Confidence 34567799999999988533222 32344 333344456677777664
No 430
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=84.82 E-value=0.88 Score=45.57 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.3
Q ss_pred EEEEccCCCCchHH
Q 005837 308 CILADQSGSGKTLA 321 (675)
Q Consensus 308 vii~apTGsGKTl~ 321 (675)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 431
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.65 E-value=4.1 Score=47.28 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=26.0
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
.....+++||||+|.+. ..-...+.+++...+...-+|+ .+|
T Consensus 118 ~~~~~KVvIIdea~~Ls--~~a~naLLK~LEepp~~tifIL-~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLS--QAAFNAFLKTLEEPPSYAIFIL-ATT 159 (614)
T ss_pred ccCCcEEEEEECcccCC--HHHHHHHHHHHhCCCCCeEEEE-EeC
Confidence 35678999999999996 2233445555555544444444 444
No 432
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.36 E-value=5.7 Score=48.14 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.3
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.+.++.||+|+|||...-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 6899999999999986643
No 433
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.23 E-value=4.3 Score=41.19 Aligned_cols=90 Identities=13% Similarity=0.256 Sum_probs=60.3
Q ss_pred eeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcc--cccCCCCc
Q 005837 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR--TARGAGGT 636 (675)
Q Consensus 559 ~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR--agR~~g~~ 636 (675)
+.+..++++.+... -.|.++...+...|+|.=+.++||+.+++..+.....-++..+.++|| || .-| .|-.
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR-~gY~ 183 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYR-PGYE 183 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCC-cccc
Confidence 66777776654433 344444321124599999999999999999999999999988888888 33 112 2335
Q ss_pred cEEEEEEeCccHHHHHHHH
Q 005837 637 GKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 637 g~~i~~~~~~d~~~~~~l~ 655 (675)
..|=+|.+..-...+..+.
T Consensus 184 dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred cceEEecCHHHHHHHHHHH
Confidence 5677777665555555553
No 434
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.12 E-value=3.6 Score=46.38 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=20.9
Q ss_pred ccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 628 RagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
+|-| ....|..++.+.....+....=++..++.++
T Consensus 409 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (486)
T PRK14953 409 NAEI-KEEEGKITIKVEKSEEDTLDLEIKSIKKYFP 443 (486)
T ss_pred hhhh-hhhcCceEEEecccHHHHHHHHHHHHHHhCC
Confidence 5556 5567777777665555555544555555555
No 435
>PRK08760 replicative DNA helicase; Provisional
Probab=83.99 E-value=4.3 Score=45.60 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=56.3
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
..|.-++|.|.+|.|||.-.+-.+.+.... .+..++|++.- .-..|+..++...... .+. ..+..
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~-----------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~-i~~--~~i~~ 291 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIK-----------SKKGVAVFSME-MSASQLAMRLISSNGR-INA--QRLRT 291 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHh-----------cCCceEEEecc-CCHHHHHHHHHHhhCC-CcH--HHHhc
Confidence 345667889999999998655444333322 13356666542 2234555454433211 111 11111
Q ss_pred CcchHHHHH-------HhhCCCcEEEe-----CHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 383 GFRQKTQLE-------NLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 383 g~~~~~~~~-------~l~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
+.-....+. .+. ...+.|- |++.+...+++-. ....+++||||=.+.|.
T Consensus 292 g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 292 GALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 222222222 122 2344443 5566654444311 12458899999998874
No 436
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=83.98 E-value=0.88 Score=51.07 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++++||||||||..+++|.+-. . +.-+||+=|.-+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~------------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y------------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c------------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999987632 1 1257888898899888777776653
No 437
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.90 E-value=2.2 Score=45.85 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+..++++||||||||...
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999954
No 438
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.83 E-value=12 Score=40.57 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=30.4
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCC-CCccEEEEecCCCHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIY 467 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-~~~qiI~lSAT~~~~v~ 467 (675)
....+|++||+|.- +-.-...+..++..+. ...-+|+.|-+.|.+++
T Consensus 126 ~~~~lLcfDEF~V~--DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 126 KESRLLCFDEFQVT--DIADAMILKRLFEALFKRGVVLVATSNRPPEDLY 173 (362)
T ss_pred hcCCEEEEeeeecc--chhHHHHHHHHHHHHHHCCCEEEecCCCChHHHc
Confidence 34568999999865 2333455666665543 45677777778776644
No 439
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=83.75 E-value=0.95 Score=52.13 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
++++++||||||||..+.+|.+-.+ +.-+||+=|.-|+........++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--------------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--------------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--------------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 5799999999999999999987542 2357888999999988888777754
No 440
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=83.71 E-value=1.3 Score=51.02 Aligned_cols=75 Identities=17% Similarity=0.369 Sum_probs=53.9
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEE--------EcCCCCCHHHHHHHhcccccCCCCccEEEEEEeC---
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV--------LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG--- 645 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI--------~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~--- 645 (675)
-++|..|+-. |-|-+.+++-||-+..=+-|+ -..+|||...-+|..||+.|...-.+--|+|+..
T Consensus 850 KqrFM~GeK~----vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLA 925 (1300)
T KOG1513|consen 850 KQRFMDGEKL----VAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELA 925 (1300)
T ss_pred Hhhhccccce----eeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhc
Confidence 4578887755 888899999999886655454 3779999999999999999932345666666553
Q ss_pred ccHHHHHHHH
Q 005837 646 KQVSLAQRIM 655 (675)
Q Consensus 646 ~d~~~~~~l~ 655 (675)
.+..++.-+-
T Consensus 926 GErRFAS~VA 935 (1300)
T KOG1513|consen 926 GERRFASIVA 935 (1300)
T ss_pred cchHHHHHHH
Confidence 3444444433
No 441
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=83.28 E-value=1.5 Score=42.63 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=24.7
Q ss_pred ChHHHHHHhhhhh-cCCCEEEEccCCCCchHHH
Q 005837 291 PSQIQAMAFPPVV-EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 291 ~~~iQ~~~i~~il-~g~dvii~apTGsGKTl~~ 322 (675)
+++-|.+.+...+ .+..++++||||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4466777776655 5789999999999999853
No 442
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=83.25 E-value=3.2 Score=41.40 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=27.6
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
.|+-+.|.|++|+|||...+..+...+..... ......++++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~------~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGEL------GGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhccccc------CCCcceEEEEecCC
Confidence 35678899999999999665544433322100 01124678877643
No 443
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.15 E-value=4.5 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=17.9
Q ss_pred CCEEEEccCCCCchHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l 327 (675)
.++++.||+|+|||..+...+.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 6899999999999997654433
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.06 E-value=4.9 Score=44.91 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=51.6
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECC
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg 383 (675)
.|.-+++.|++|+|||...+..+.+.. . .+.+++|+..- +-..|+..+...++.. .....+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a-~-----------~g~kvlYvs~E-Es~~qi~~ra~rlg~~---~~~l~~~~e 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA-K-----------NQMKVLYVSGE-ESLQQIKMRAIRLGLP---EPNLYVLSE 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-h-----------cCCcEEEEECc-CCHHHHHHHHHHcCCC---hHHeEEcCC
Confidence 356788999999999996554333222 1 13468888754 3456666666655321 111111110
Q ss_pred cchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
.+.+.+...+.. .+.+++|||.+..+.
T Consensus 157 ------------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ------------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ------------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 133444444433 246799999998764
No 445
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=82.88 E-value=2.4 Score=44.86 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=28.7
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
.|+-+.|.+|+|+|||..++..+.+... .+..++++..-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~------------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK------------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------------cCCcEEEEcccchhHH
Confidence 4567889999999999866544444332 2457777765444443
No 446
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.72 E-value=5.4 Score=42.77 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=14.7
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
..++.||.|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986533
No 447
>PRK14701 reverse gyrase; Provisional
Probab=82.31 E-value=5 Score=51.61 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccC-CCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKE-TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~-~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~ 597 (675)
.+.++||.++++.-+.++++.|+.+.... .++.+..+||+++..++.++++.+.+|..+ |||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~d----ILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFD----ILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCC----EEEECCc
Confidence 45689999999999999999998865332 246788999999999999999999998877 9999974
No 448
>PRK04841 transcriptional regulator MalT; Provisional
Probab=82.25 E-value=12 Score=45.48 Aligned_cols=41 Identities=12% Similarity=0.377 Sum_probs=33.2
Q ss_pred eEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCC
Q 005837 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~ 463 (675)
-+||||++|.+. +......+..++...+.+..+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~-~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLIT-NPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCC-ChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 489999999986 55566788889998888888888887643
No 449
>PRK09354 recA recombinase A; Provisional
Probab=81.96 E-value=2.9 Score=44.74 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=30.3
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
.|+-+.|.+|+|+|||...+..+.+... .+..++||..--.+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~------------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK------------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------------cCCcEEEECCccchHH
Confidence 3567889999999999976555544432 2457888876555554
No 450
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=81.95 E-value=8.4 Score=41.86 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.9
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
-.|+..+|.||.|+|||...
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 35889999999999999743
No 451
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=81.69 E-value=2.7 Score=43.07 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=29.8
Q ss_pred HhhhhhcC-----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 298 AFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 298 ~i~~il~g-----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
.+..++.| .-+=|+|+.|+|||-..+-.++....... ..+.+.+++||.-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~------~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEE------IGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGC------TTSSSSEEEEEESSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccc------cccCCCceEEEeCCC
Confidence 45555543 33457999999999754444443322211 113356899996433
No 452
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=81.37 E-value=22 Score=34.20 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=35.8
Q ss_pred ccccceEEEEcCcccccCCccH--HHHHHHHHhhCCCCccEEEEecCCCHHHHH
Q 005837 417 QLINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~--~~~l~~il~~~~~~~qiI~lSAT~~~~v~~ 468 (675)
.-..++++|+||+-... +.++ ...+..+++..+...-+|+.--.+|+++..
T Consensus 112 ~~~~~dlvVLDEi~~Al-~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 112 DEGRYSLVVLDELSLAI-QFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred hCCCCCEEEEehhHHHH-HCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 34678999999997665 3333 456777888887776766655567777654
No 453
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.30 E-value=3.8 Score=48.03 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.|.+.+++++.. ..+..+||.++.+....++.+.++.... ..+..+|+++++.+|...+.+..+|+.+ |+
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~----vV 300 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG----AKVAVLHSGLSPGERYRVWRRARRGEAR----VV 300 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC----CChhhhcccCChHHHHHHHHHHhcCCce----EE
Confidence 366667666654 2356899999999999999988887652 5788999999999999999999999988 99
Q ss_pred EEcccccccCCCCCcCEEEE
Q 005837 593 VCTDRASRGIDFAGVDHVVL 612 (675)
Q Consensus 593 VaT~~~~~GiDip~v~~VI~ 612 (675)
|.|..+-- .-+++...||.
T Consensus 301 IGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred EEechhhc-CchhhccEEEE
Confidence 99975332 23556676665
No 454
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.27 E-value=8.3 Score=46.62 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.4
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.|.+++||.|+|||...-.
T Consensus 209 ~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CceeEECCCCCCHHHHHHH
Confidence 5899999999999997644
No 455
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=81.26 E-value=6.4 Score=44.02 Aligned_cols=75 Identities=16% Similarity=0.353 Sum_probs=55.8
Q ss_pred CceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----ccc-ccCC
Q 005837 530 SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RAS-RGID 603 (675)
Q Consensus 530 ~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~-~GiD 603 (675)
.++||.|++++-+.++++.++.+.....++.+..++|+.+...+...++ ...+ |+|+|. .+. ..++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~----IvV~Tp~rl~~~l~~~~~~ 144 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAH----IIVGTPGRILDHLRKGTLD 144 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCC----EEEEChHHHHHHHHcCCcc
Confidence 4689999999999999999888764434578899999998876654443 2334 999994 222 3577
Q ss_pred CCCcCEEEE
Q 005837 604 FAGVDHVVL 612 (675)
Q Consensus 604 ip~v~~VI~ 612 (675)
+.++++||.
T Consensus 145 l~~l~~lVi 153 (460)
T PRK11776 145 LDALNTLVL 153 (460)
T ss_pred HHHCCEEEE
Confidence 888888875
No 456
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=81.15 E-value=47 Score=35.27 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh---CCCCccEEEEecCC
Q 005837 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS---SPVTAQYLFVTATL 462 (675)
Q Consensus 406 ~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~---~~~~~qiI~lSAT~ 462 (675)
+|+..+..+...-+.--++|+||+|... .+.....+-.++.. ...++-++++|.-+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~-~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFA-PHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccc-cchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 3444444433222222478999999887 45544444444433 33455666666654
No 457
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.13 E-value=7.1 Score=39.28 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=66.7
Q ss_pred ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc------cccccCCC
Q 005837 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD------RASRGIDF 604 (675)
Q Consensus 531 k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~------~~~~GiDi 604 (675)
.++|.|.+++-+-++.+...+..+--..+++..+.|+++-+.-.++++. --. |+|+|. +-.+.+++
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~Ph----ivVgTPGrilALvr~k~l~l 183 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPH----IVVGTPGRILALVRNRSLNL 183 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCe----EEEcCcHHHHHHHHhccCch
Confidence 5899999999999998877776655566899999999988777766654 223 999996 22367888
Q ss_pred CCcCEEEEcCCCC-----CHHHHHHHhccccc
Q 005837 605 AGVDHVVLFDFPR-----DPSEYVRRVGRTAR 631 (675)
Q Consensus 605 p~v~~VI~~d~p~-----s~~~y~Qr~GRagR 631 (675)
.++++-+.-...+ ++..-+|.+=|+--
T Consensus 184 k~vkhFvlDEcdkmle~lDMrRDvQEifr~tp 215 (387)
T KOG0329|consen 184 KNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP 215 (387)
T ss_pred hhcceeehhhHHHHHHHHHHHHHHHHHhhcCc
Confidence 8888766533222 34555777777654
No 458
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=81.04 E-value=12 Score=36.30 Aligned_cols=76 Identities=12% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----cc-cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----AS-RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~-~G 601 (675)
.+.++||.++++..+.+.+..++..... .++.+..++|+.+..+....+. +... |+|+|.. +. .-
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~----iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLK----RGPH----IVVATPGRLLDLLERGK 138 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhc----CCCC----EEEEChHHHHHHHHcCC
Confidence 4567999999999999998888876533 3477888999988766544332 3344 9999952 22 23
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
.++++++++|.
T Consensus 139 ~~~~~l~~lIv 149 (203)
T cd00268 139 LDLSKVKYLVL 149 (203)
T ss_pred CChhhCCEEEE
Confidence 56777888775
No 459
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=80.92 E-value=4.7 Score=46.43 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.2
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
+..|+-+-++||||||||+..
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~ 372 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI 372 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 456778889999999998854
No 460
>PRK09087 hypothetical protein; Validated
Probab=80.91 E-value=4.6 Score=40.56 Aligned_cols=18 Identities=39% Similarity=0.381 Sum_probs=14.7
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.-++++||+|+|||-...
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 448999999999998443
No 461
>PRK05636 replicative DNA helicase; Provisional
Probab=80.87 E-value=8.7 Score=43.48 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
|.-+++.|.+|.|||.-.+
T Consensus 265 G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CceEEEEeCCCCCHHHHHH
Confidence 4557889999999998544
No 462
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.77 E-value=7.1 Score=43.77 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----ccccc-C
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASRG-I 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~G-i 602 (675)
...+||.++|++-|.++...+.+++... .+...+++|+.+...+.+-+ +.| .. |+|||. .+..| +
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l---~~g-vd----iviaTPGRl~d~le~g~~ 235 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL---ERG-VD----VVIATPGRLIDLLEEGSL 235 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH---hcC-Cc----EEEeCChHHHHHHHcCCc
Confidence 4459999999999999999999987543 36788999998877666544 333 23 999996 34455 6
Q ss_pred CCCCcCEEEE--------cCCCCCHHHHHHHhccccc
Q 005837 603 DFAGVDHVVL--------FDFPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 603 Dip~v~~VI~--------~d~p~s~~~y~Qr~GRagR 631 (675)
|+..+.++|. .++-..+...++.++|.-|
T Consensus 236 ~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 236 NLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred cccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 8889999886 3333356777777777666
No 463
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=80.50 E-value=1.6 Score=45.09 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=28.2
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
..+.+++++|+||||||... -.++..+... ..+++++-...|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-----------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-----------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-----------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-----------ccceEEecccccee
Confidence 45679999999999999854 3334333221 24778877766553
No 464
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=80.45 E-value=11 Score=38.18 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=17.1
Q ss_pred hhcCC-CEEEEccCCCCchHHHH
Q 005837 302 VVEGK-SCILADQSGSGKTLAYL 323 (675)
Q Consensus 302 il~g~-dvii~apTGsGKTl~~l 323 (675)
+-.++ -+.++++-|||||...-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH
Confidence 34455 67889999999999765
No 465
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=80.45 E-value=15 Score=41.90 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=73.3
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hhcCCCCceEEEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-LSKCGVPFRSMVVT 381 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~-l~~~~~~~~v~~l~ 381 (675)
...+-.+..-|=-.|||+ ++.|++..+... ..+-++.|++.-+-.++-+.+++.. +.+|-..-.+...-
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s---------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k 269 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN---------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK 269 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh---------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec
Confidence 344556667799999999 466777776653 3466899999988776665555433 22221111111111
Q ss_pred CCcchHHHHHHhhCCCcEEEeCHHHH-----HHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccE
Q 005837 382 GGFRQKTQLENLQEGVDVLIATPGRF-----MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQY 455 (675)
Q Consensus 382 gg~~~~~~~~~l~~~~~IlV~Tp~~L-----~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qi 455 (675)
+ -.|.+.-|+.= ....+.....-+.+.++++||||.+. ...+..|+-.+ ..+.++
T Consensus 270 ~--------------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~-----~~a~~tilgfm~q~~~Ki 330 (668)
T PHA03372 270 D--------------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK-----KDAFNTILGFLAQNTTKI 330 (668)
T ss_pred C--------------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC-----HHHHHHhhhhhcccCceE
Confidence 1 12333322211 11112234456678999999999986 23334443332 346788
Q ss_pred EEEecC
Q 005837 456 LFVTAT 461 (675)
Q Consensus 456 I~lSAT 461 (675)
|++|.|
T Consensus 331 IfISS~ 336 (668)
T PHA03372 331 IFISST 336 (668)
T ss_pred EEEeCC
Confidence 888866
No 466
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=80.38 E-value=8.3 Score=45.98 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.8
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
+.+++.||+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999854
No 467
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=80.06 E-value=2.1 Score=40.92 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=19.3
Q ss_pred ccceEEEEcCcccccC-CccHHHHHHHHHh
Q 005837 419 INLRCAILDEVDILFN-DEDFEVALQSLIS 447 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~-~~~~~~~l~~il~ 447 (675)
..-+++||||+-.|.- ..+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 4667999999987753 5678888888877
No 468
>PRK05595 replicative DNA helicase; Provisional
Probab=79.96 E-value=6.7 Score=43.70 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEEC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~g 382 (675)
..|.-++|.|.||.|||...+--+.+.... .+..+++++.- .-..|+..++-.... +.+.... ..|
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~-----------~g~~vl~fSlE-ms~~~l~~R~~a~~~-~v~~~~~-~~~ 264 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALR-----------EGKSVAIFSLE-MSKEQLAYKLLCSEA-NVDMLRL-RTG 264 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHH-----------cCCcEEEEecC-CCHHHHHHHHHHHhc-CCCHHHH-hcC
Confidence 345567789999999998654433332222 13467777543 223344434332211 1111110 112
Q ss_pred CcchHHHHHHhh------CCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 383 GFRQKTQLENLQ------EGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 383 g~~~~~~~~~l~------~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
... ...+..+. ....+.| .|++.+...+++-. .-..+++||||=.|.|..
T Consensus 265 ~l~-~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 265 NLE-DKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK-IEHGIDMILIDYLQLMSG 325 (444)
T ss_pred CCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEeHHHhccC
Confidence 222 22222111 1123333 24455544443311 123588999999998863
No 469
>PHA00350 putative assembly protein
Probab=79.81 E-value=6 Score=43.10 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=31.6
Q ss_pred cceEEEEcCcccccCCc-c---------------------HHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHh
Q 005837 420 NLRCAILDEVDILFNDE-D---------------------FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~-~---------------------~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
.=.+|||||||.+.... + ....+..+..+.....-++++|-.+. .+-..+...
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~-~Id~~iR~l 155 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR-KIHSDIRAM 155 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH-HhhHHHHHh
Confidence 34689999999887421 1 12334444555556778888887653 333444443
No 470
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=79.76 E-value=11 Score=39.96 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 405 ~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
..+...+....+ ....+++|||+||.|. ..-...+.+++..-+ +..+|++|.
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~--~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMN--EAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcC--HHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 334444444332 3578999999999996 334445555666555 555555554
No 471
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=79.68 E-value=1.6 Score=50.91 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++++||||||||..+++|-+-.+ ...+||+=|.-|+........++.+
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~--------------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF--------------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC--------------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 35899999999999999999976432 2367888888888887766665543
No 472
>PRK10436 hypothetical protein; Provisional
Probab=79.39 E-value=2.3 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.5
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l 330 (675)
--++++||||||||.+. ..++..+
T Consensus 219 GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 219 GLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CeEEEECCCCCChHHHH-HHHHHhh
Confidence 46889999999999964 3344444
No 473
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=79.30 E-value=4.2 Score=39.17 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=25.1
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhC-CCCccEEEEec
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTA 460 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~~~~qiI~lSA 460 (675)
.+-+++++||...-+ +......+..++... ....++|+.|-
T Consensus 115 ~~p~llilDEp~~~L-D~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAAL-DPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 556899999999877 444444444444433 22356666654
No 474
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=79.15 E-value=6.5 Score=43.81 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=49.5
Q ss_pred ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc
Q 005837 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596 (675)
Q Consensus 531 k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~ 596 (675)
-.|||++|++-+.++.+.|..... ..++.+..+.|+|+...+.+++.. .+ + |+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~--~p--~----IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQ--RP--D----IVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhc--CC--C----EEEecc
Confidence 389999999999999999988763 566999999999999999999887 33 2 999997
No 475
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=78.82 E-value=3 Score=45.61 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=30.2
Q ss_pred hhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
.-...+++++.|.||+|||.+ +..++..+... +-+++|.=|.-+....
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-----------g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRAR-----------GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-----------T-EEEEEEETTHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-----------CCEEEEEECCchHHHH
Confidence 334568999999999999974 45666666543 2356666666555543
No 476
>PRK09165 replicative DNA helicase; Provisional
Probab=78.79 E-value=13 Score=42.20 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhcc---CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL---SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~---~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~ 379 (675)
..|.-++|.|.+|.|||.-++--+.+.......... ......+..++|++.- .-..|+..++..... +.+... +
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s-~v~~~~-i 291 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQS-EISSSK-I 291 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhc-CCCHHH-H
Confidence 345568889999999998654444433322100000 0000124467777542 233444444433211 111111 1
Q ss_pred EECCcchHHHHHHhh------CCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 380 VTGGFRQKTQLENLQ------EGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 380 l~gg~~~~~~~~~l~------~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
..|.. ....+..+. ....+.| .|++.+...+++-. .-..+++||||=.|.|.
T Consensus 292 ~~~~l-~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~-~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 292 RRGKI-SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK-RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred hcCCC-CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHhcc
Confidence 12222 222222111 1233444 25566654444311 12358899999999875
No 477
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.78 E-value=2.1 Score=43.99 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.0
Q ss_pred HHHhhhhhcCCCEEEEccCCCCchHHHHH
Q 005837 296 AMAFPPVVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 296 ~~~i~~il~g~dvii~apTGsGKTl~~ll 324 (675)
.+++..+..+.++++.||+|+|||.++..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 44455566789999999999999997643
No 478
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=78.77 E-value=18 Score=44.35 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEc-ccccccCCCC
Q 005837 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT-DRASRGIDFA 605 (675)
Q Consensus 527 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT-~~~~~GiDip 605 (675)
..+.++.|.++|---|++-++-+++... +..++|..+.--.+.+++.++++...+|+++ |||.| ..++.+|-+.
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vD----IvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVD----IVIGTHRLLSKDVKFK 715 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCcc----EEEechHhhCCCcEEe
Confidence 3457899999999999999999988763 3458899999999999999999999999999 99999 5688899999
Q ss_pred CcCEEEE
Q 005837 606 GVDHVVL 612 (675)
Q Consensus 606 ~v~~VI~ 612 (675)
+.-.||.
T Consensus 716 dLGLlII 722 (1139)
T COG1197 716 DLGLLII 722 (1139)
T ss_pred cCCeEEE
Confidence 9998885
No 479
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=78.22 E-value=4.3 Score=43.49 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHCCCCCChHHHHHHhhhhhc-CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH
Q 005837 281 ESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (675)
Q Consensus 281 ~~l~~~g~~~~~~iQ~~~i~~il~-g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L 357 (675)
+.+.+.|+ +++.+.+.+..+.. +.+++++++||+|||...- .++..+ ....+++++-.+.||
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i------------~~~~riv~iEd~~El 217 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALV------------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccC------------CCCCcEEEECCccee
Confidence 33444443 34566666666554 5799999999999998432 222222 123366777666665
No 480
>PRK13764 ATPase; Provisional
Probab=78.12 E-value=2.3 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l 330 (675)
.+++++++||||||||... -.++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3578999999999999854 3344444
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=78.05 E-value=2.7 Score=32.90 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCCchHH
Q 005837 305 GKSCILADQSGSGKTLA 321 (675)
Q Consensus 305 g~dvii~apTGsGKTl~ 321 (675)
+...++.+++|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999984
No 482
>PRK06321 replicative DNA helicase; Provisional
Probab=77.85 E-value=23 Score=39.82 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
|.=++|.|.+|.|||.-.+- +...+... .+..+++++. ..-..|+..++..... .+....+..+.
T Consensus 226 G~LiiiaarPgmGKTafal~-ia~~~a~~----------~g~~v~~fSL-EMs~~ql~~Rlla~~s---~v~~~~i~~~~ 290 (472)
T PRK06321 226 SNLMILAARPAMGKTALALN-IAENFCFQ----------NRLPVGIFSL-EMTVDQLIHRIICSRS---EVESKKISVGD 290 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHh----------cCCeEEEEec-cCCHHHHHHHHHHhhc---CCCHHHhhcCC
Confidence 45578899999999985444 33333211 1235666643 1223333334322111 11111111122
Q ss_pred chHHHHH-------HhhCCCcEEEe-----CHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 385 RQKTQLE-------NLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 385 ~~~~~~~-------~l~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
-....+. .+. ...+.|- |.+.+...+++-. .-..+++||||=.+.+.
T Consensus 291 l~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 291 LSGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred CCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcC
Confidence 2222232 222 2345553 5555654444311 12458899999999885
No 483
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=77.82 E-value=5.3 Score=49.88 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCC--CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccccc-ccCC-C
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKET--RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRAS-RGID-F 604 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~--~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~-~GiD-i 604 (675)
+.+++|.++++.-+.++++.++.+..... ...++.+||+++..++...++.+.+|..+ |||+|...- ..++ +
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~d----IlV~Tp~rL~~~~~~l 196 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFD----ILITTTMFLSKNYDEL 196 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCC----EEEECHHHHHHHHHHh
Confidence 56899999999999999999988764211 12245789999999999999999988777 999997422 1111 1
Q ss_pred C-CcCEEEE
Q 005837 605 A-GVDHVVL 612 (675)
Q Consensus 605 p-~v~~VI~ 612 (675)
. .++++|.
T Consensus 197 ~~~~~~iVv 205 (1171)
T TIGR01054 197 GPKFDFIFV 205 (1171)
T ss_pred cCCCCEEEE
Confidence 2 5777765
No 484
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=77.56 E-value=5.5 Score=42.46 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=29.5
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHH
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~ 468 (675)
....+++||||+|.+. ..-...+.+.+..-+....+|++| +-+..+..
T Consensus 108 ~~~~kvviI~~a~~~~--~~a~NaLLK~LEEPp~~~~~Il~t-~~~~~ll~ 155 (329)
T PRK08058 108 ESNKKVYIIEHADKMT--ASAANSLLKFLEEPSGGTTAILLT-ENKHQILP 155 (329)
T ss_pred ccCceEEEeehHhhhC--HHHHHHHHHHhcCCCCCceEEEEe-CChHhCcH
Confidence 4568999999999996 333445555556555555555544 43334333
No 485
>PRK07773 replicative DNA helicase; Validated
Probab=77.30 E-value=11 Score=46.06 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
|.-++|.|.+|+|||.-++--+.+...+. +..++|++- -.-..|+..++..... +.+... +..|..
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~-----------~~~V~~fSl-Ems~~ql~~R~~s~~~-~i~~~~-i~~g~l 282 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRH-----------RLAVAIFSL-EMSKEQLVMRLLSAEA-KIKLSD-MRSGRM 282 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEec-CCCHHHHHHHHHHHhc-CCCHHH-HhcCCC
Confidence 45588899999999986554444433221 235666652 2223444444433211 111111 112221
Q ss_pred chHHHHHHhh------CCCcEEE-----eCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 385 RQKTQLENLQ------EGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 385 ~~~~~~~~l~------~~~~IlV-----~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
. ...+..+. ....+.| .|+..+...+++-. .-..+++||||=.+.|.
T Consensus 283 ~-~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 283 S-DDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR-QEANLGLIVVDYLQLMT 340 (886)
T ss_pred C-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchhhcC
Confidence 2 22222111 1234544 35555654333211 12358899999999885
No 486
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=77.14 E-value=4.7 Score=46.91 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH--HHHHHHHHHHHhhc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE--LASQVLSNCRSLSK 370 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~--La~Q~~~~l~~l~~ 370 (675)
..+++|.|+||+|||..+.+.+.+.+.. +..++|+=|--. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 4689999999999999876655555543 346777778753 66666666666543
No 487
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=77.13 E-value=4.8 Score=38.89 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=35.1
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~ 370 (675)
.|.-+++.|++|+|||...+-.+...+.....-+ .....+.+++++..-.. ..++.+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g--~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLG--ELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT-----------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCC--cccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4667899999999999976554554443211111 01123557888876554 5566677776653
No 488
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=77.12 E-value=5.3 Score=46.17 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=41.3
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH--HHHHHHHHHHHHhhc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA--ELASQVLSNCRSLSK 370 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr--~La~Q~~~~l~~l~~ 370 (675)
..+.+|.|+||+|||..+.+.+.+.+.. +..++++=|.. ++...+...++..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4589999999999999887777766643 44788888876 677777777777655
No 489
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=77.07 E-value=3.6 Score=47.56 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CChHHHHHHhhhhhc--------C-C-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 290 RPSQIQAMAFPPVVE--------G-K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~--------g-~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
.++..|.+++-.... | + -.+|....|.||-.+..-.++....+ +..++|++.-+..|-.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-----------GRKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-----------GRKRALWFSVSSDLKF 332 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-----------ccceeEEEEecccccc
Confidence 455667777654432 2 2 24555556665544322223333332 2448999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEE----CCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc--cc-----------ccccce
Q 005837 360 QVLSNCRSLSKCGVPFRSMVVT----GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--IL-----------QLINLR 422 (675)
Q Consensus 360 Q~~~~l~~l~~~~~~~~v~~l~----gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~--~~-----------~l~~i~ 422 (675)
+..+.++.++..+ +.+..+. +..+.++. . .-+-.++++|+..|.-..+.. .+ --..=.
T Consensus 333 DAERDL~DigA~~--I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 333 DAERDLRDIGATG--IAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred chhhchhhcCCCC--ccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 8888888887643 3332221 10000000 0 012359999998775333210 00 011134
Q ss_pred EEEEcCcccccC--------CccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 423 CAILDEVDILFN--------DEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 423 ~IVIDEaH~l~~--------~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
+||+||||.-.+ .......+..+.+.+| +.+++.-|||-
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 899999997542 1233445556656564 78889999984
No 490
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=76.68 E-value=36 Score=36.71 Aligned_cols=49 Identities=22% Similarity=0.116 Sum_probs=33.3
Q ss_pred ccceEEEEcCcccccCCcc--HHHHHHHHHhhCCCCccEEEEecCCCHHHHH
Q 005837 419 INLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~--~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~ 468 (675)
..--+||+|.|+.+- +++ ..+.+-++....+.+.-.|.+|++.+...+.
T Consensus 114 d~~~~liLDnad~lr-D~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 114 DQKVFLILDNADALR-DMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred CceEEEEEcCHHhhh-ccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhh
Confidence 345589999999887 333 3344555555566666678889998877654
No 491
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=76.55 E-value=6.3 Score=39.50 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQ 328 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~ 328 (675)
.|.-+.+.|++|+|||...+..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999866554443
No 492
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=76.52 E-value=2.6 Score=46.46 Aligned_cols=49 Identities=24% Similarity=0.476 Sum_probs=31.5
Q ss_pred hhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 299 i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
++.-...+++++.|+||+|||.+. ..++..+... +.+++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~i-~~l~~~~~~~-----------~~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQI-RELLASIRAR-----------GDRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHHH-HHHHHHHHhc-----------CCCEEEEeCCcchhH
Confidence 344445689999999999999863 3334443332 336677777766554
No 493
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=76.45 E-value=3.7 Score=40.30 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=13.2
Q ss_pred EEEEccCCCCchHHH
Q 005837 308 CILADQSGSGKTLAY 322 (675)
Q Consensus 308 vii~apTGsGKTl~~ 322 (675)
++++||||||||...
T Consensus 4 ilI~GptGSGKTTll 18 (198)
T cd01131 4 VLVTGPTGSGKSTTL 18 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999964
No 494
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=76.22 E-value=5.8 Score=45.21 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..|+-+.++||+|||||...
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999843
No 495
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=76.22 E-value=4.2 Score=50.84 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=44.6
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
.+.+++|.|..|||||.+...-++..+.... ...-..+||++-|+..+.++..++.+
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-------~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-------PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-------CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 3579999999999999988777777776631 01233799999999999998877665
No 496
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.59 E-value=6.8 Score=45.26 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=27.6
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEE
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~ 457 (675)
+++-.++|+|||-.-+ |...+..++..+..+..+.-+|.
T Consensus 620 lr~P~VLILDEATSAL-DaeSE~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 620 LRNPRVLILDEATSAL-DAESEYLVQEALDRLMQGRTVLV 658 (716)
T ss_pred hcCCCEEEEechhhhc-chhhHHHHHHHHHHhhcCCeEEE
Confidence 5567789999998877 56667777887776665644333
No 497
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.54 E-value=3.7 Score=42.37 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhc--CCCEEEEccCCCCchHHH
Q 005837 293 QIQAMAFPPVVE--GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 293 ~iQ~~~i~~il~--g~dvii~apTGsGKTl~~ 322 (675)
+.|.+.|..++. +..+++.|+||||||...
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345555544443 346889999999999854
No 498
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.46 E-value=12 Score=41.37 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=65.0
Q ss_pred HHHHHHHHHHh---CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 516 KKSALLQLIEK---SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 516 k~~~l~~ll~~---~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.+..|..+|-. -+--++||.|+|++-+-+++...+.+. ....+.++..-|+|+-..+..+++.-. .|+
T Consensus 236 ~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qla-qFt~I~~~L~vGGL~lk~QE~~LRs~P--------DIV 306 (691)
T KOG0338|consen 236 ALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLA-QFTDITVGLAVGGLDLKAQEAVLRSRP--------DIV 306 (691)
T ss_pred HHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHH-hhccceeeeeecCccHHHHHHHHhhCC--------CEE
Confidence 44455555533 234579999999999888887777665 344588999999999999888776432 299
Q ss_pred EEccc-------ccccCCCCCcCEEEEcC
Q 005837 593 VCTDR-------ASRGIDFAGVDHVVLFD 614 (675)
Q Consensus 593 VaT~~-------~~~GiDip~v~~VI~~d 614 (675)
|||.- -+.++|+.++.++|.-.
T Consensus 307 IATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 307 IATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EecchhHHHHhccCCCccccceeEEEech
Confidence 99972 24677888888777633
No 499
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.43 E-value=2.1 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.1
Q ss_pred hcCCCEEEEccCCCCchHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ll 324 (675)
+..-|+|+.+|||||||+.++-
T Consensus 224 LeKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred eecccEEEECCCCCchhHHHHH
Confidence 4456899999999999996654
No 500
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=75.37 E-value=2.6 Score=49.16 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=38.7
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..++++.||||||||..+.+|-+-.+ ..-+||+=|.-|+........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~--------------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW--------------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC--------------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 36899999999999999999977432 235788888888887776665554
Done!