Query 005837
Match_columns 675
No_of_seqs 331 out of 2511
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.2E-56 2.5E-60 488.9 45.5 376 268-674 56-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.4E-53 1.5E-57 463.1 42.9 381 268-674 15-409 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 8.7E-53 3E-57 460.2 40.0 368 268-669 37-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 7.2E-52 2.5E-56 452.8 37.0 372 268-673 40-412 (414)
5 1s2m_A Putative ATP-dependent 100.0 5.9E-51 2E-55 444.0 43.8 366 268-669 21-386 (400)
6 3fht_A ATP-dependent RNA helic 100.0 3.1E-51 1.1E-55 447.3 39.9 370 260-662 17-396 (412)
7 1xti_A Probable ATP-dependent 100.0 1.2E-50 4.2E-55 439.6 42.1 371 268-671 8-381 (391)
8 3pey_A ATP-dependent RNA helic 100.0 1.9E-50 6.4E-55 438.0 39.9 365 268-668 5-378 (395)
9 3fmp_B ATP-dependent RNA helic 100.0 6.3E-52 2.2E-56 463.3 21.2 367 261-660 85-461 (479)
10 1hv8_A Putative ATP-dependent 100.0 7E-49 2.4E-53 421.4 42.6 355 268-662 6-361 (367)
11 3i5x_A ATP-dependent RNA helic 100.0 3.8E-49 1.3E-53 449.5 37.0 366 275-660 79-463 (563)
12 3sqw_A ATP-dependent RNA helic 100.0 7.7E-49 2.6E-53 448.4 38.0 367 275-661 28-413 (579)
13 1fuu_A Yeast initiation factor 100.0 8.1E-51 2.8E-55 441.3 20.2 367 268-669 21-387 (394)
14 2v1x_A ATP-dependent DNA helic 100.0 2.8E-48 9.4E-53 441.9 36.2 345 270-656 23-384 (591)
15 1oyw_A RECQ helicase, ATP-depe 100.0 5.5E-48 1.9E-52 434.7 34.9 342 268-657 2-354 (523)
16 2z0m_A 337AA long hypothetical 100.0 2.4E-47 8.2E-52 404.8 36.3 335 275-659 1-335 (337)
17 3fho_A ATP-dependent RNA helic 100.0 8.2E-47 2.8E-51 424.6 20.8 363 270-669 121-492 (508)
18 3oiy_A Reverse gyrase helicase 100.0 6.9E-45 2.4E-49 398.6 24.7 327 279-659 10-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-42 6.6E-47 405.1 33.2 350 268-648 8-410 (715)
20 2zj8_A DNA helicase, putative 100.0 4E-42 1.4E-46 402.5 34.9 349 269-648 2-389 (720)
21 3l9o_A ATP-dependent RNA helic 100.0 1.2E-42 4.2E-47 419.2 31.4 356 269-656 163-608 (1108)
22 4f92_B U5 small nuclear ribonu 100.0 1.6E-41 5.4E-46 422.9 37.5 395 231-656 870-1318(1724)
23 4a2p_A RIG-I, retinoic acid in 100.0 7.2E-42 2.5E-46 388.0 30.3 348 287-649 4-511 (556)
24 2ykg_A Probable ATP-dependent 100.0 6.2E-42 2.1E-46 399.8 28.3 354 281-650 4-520 (696)
25 3tbk_A RIG-I helicase domain; 100.0 1.2E-41 4.2E-46 385.6 29.7 348 290-652 4-513 (555)
26 2p6r_A Afuhel308 helicase; pro 100.0 2.5E-42 8.6E-47 403.1 23.9 349 269-648 2-390 (702)
27 4a2q_A RIG-I, retinoic acid in 100.0 1.5E-40 5.3E-45 393.0 32.0 349 286-649 244-752 (797)
28 2xgj_A ATP-dependent RNA helic 100.0 8E-40 2.8E-44 391.5 35.1 338 286-656 83-510 (1010)
29 4ddu_A Reverse gyrase; topoiso 100.0 2.4E-40 8.1E-45 399.2 28.0 321 286-659 75-503 (1104)
30 1wp9_A ATP-dependent RNA helic 100.0 9E-39 3.1E-43 354.5 35.7 334 290-649 9-478 (494)
31 4gl2_A Interferon-induced heli 100.0 3.5E-40 1.2E-44 385.2 24.9 343 290-647 7-520 (699)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.6E-39 8.9E-44 387.0 28.5 348 286-648 244-751 (936)
33 4a4z_A Antiviral helicase SKI2 100.0 6.4E-39 2.2E-43 383.7 31.0 337 290-657 39-505 (997)
34 1tf5_A Preprotein translocase 100.0 3.2E-38 1.1E-42 360.4 28.8 332 285-648 79-547 (844)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-39 7.5E-44 391.0 20.0 325 280-660 47-468 (1054)
36 4f92_B U5 small nuclear ribonu 100.0 1E-37 3.6E-42 388.7 29.9 351 287-657 76-484 (1724)
37 1gm5_A RECG; helicase, replica 100.0 5.3E-38 1.8E-42 365.0 22.4 318 280-649 359-700 (780)
38 2eyq_A TRCF, transcription-rep 100.0 1.9E-36 6.6E-41 367.4 36.5 325 273-647 586-923 (1151)
39 2oca_A DAR protein, ATP-depend 100.0 5E-37 1.7E-41 345.4 22.6 321 289-644 112-453 (510)
40 2fsf_A Preprotein translocase 100.0 3.3E-36 1.1E-40 342.8 27.3 333 286-648 71-585 (853)
41 2xau_A PRE-mRNA-splicing facto 100.0 2.1E-36 7.3E-41 353.5 25.6 343 268-648 72-445 (773)
42 1nkt_A Preprotein translocase 100.0 1.6E-35 5.6E-40 337.3 29.1 334 285-648 107-619 (922)
43 2jlq_A Serine protease subunit 100.0 8.3E-37 2.8E-41 337.9 16.0 287 287-645 1-310 (451)
44 2whx_A Serine protease/ntpase/ 100.0 3.9E-37 1.3E-41 351.4 13.4 298 289-656 170-491 (618)
45 3o8b_A HCV NS3 protease/helica 100.0 1.2E-36 4.1E-41 344.8 14.2 297 291-669 218-541 (666)
46 2fwr_A DNA repair protein RAD2 100.0 8.7E-36 3E-40 332.0 16.0 302 290-646 93-454 (472)
47 1yks_A Genome polyprotein [con 100.0 3.6E-36 1.2E-40 331.6 11.7 278 301-657 4-313 (440)
48 2wv9_A Flavivirin protease NS2 100.0 1.2E-35 4.3E-40 341.1 15.8 297 290-656 215-546 (673)
49 2z83_A Helicase/nucleoside tri 100.0 1.8E-34 6E-39 319.9 16.1 277 296-646 12-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 2.1E-33 7.3E-38 308.7 22.9 269 304-643 1-288 (431)
51 3h1t_A Type I site-specific re 100.0 7.7E-33 2.6E-37 316.8 22.5 333 290-643 178-556 (590)
52 3fe2_A Probable ATP-dependent 100.0 5.3E-32 1.8E-36 274.5 24.0 209 268-482 29-237 (242)
53 3dmq_A RNA polymerase-associat 100.0 3.4E-32 1.2E-36 326.1 23.1 345 289-658 152-625 (968)
54 3rc3_A ATP-dependent RNA helic 100.0 5.7E-32 1.9E-36 309.9 23.4 288 299-658 149-456 (677)
55 1vec_A ATP-dependent RNA helic 100.0 3.6E-31 1.2E-35 261.1 24.4 202 268-479 3-204 (206)
56 3fmo_B ATP-dependent RNA helic 100.0 2.7E-31 9.1E-36 278.0 22.4 208 262-481 86-296 (300)
57 3iuy_A Probable ATP-dependent 100.0 3.8E-31 1.3E-35 265.5 22.4 207 268-480 19-226 (228)
58 3ber_A Probable ATP-dependent 100.0 2.1E-30 7E-35 264.1 25.3 204 267-481 42-246 (249)
59 1wrb_A DJVLGB; RNA helicase, D 100.0 4.3E-31 1.5E-35 269.5 20.3 214 268-483 23-240 (253)
60 1z63_A Helicase of the SNF2/RA 100.0 1E-30 3.5E-35 293.2 25.1 333 290-659 37-464 (500)
61 2oxc_A Probable ATP-dependent 100.0 1.3E-30 4.5E-35 262.1 23.0 202 268-480 24-226 (230)
62 1q0u_A Bstdead; DEAD protein, 100.0 5.7E-31 2E-35 262.6 18.9 205 268-482 4-211 (219)
63 3ly5_A ATP-dependent RNA helic 100.0 2.9E-30 9.8E-35 265.0 22.7 205 267-478 51-258 (262)
64 2gxq_A Heat resistant RNA depe 100.0 4.9E-30 1.7E-34 253.1 22.1 202 269-480 2-203 (207)
65 1t6n_A Probable ATP-dependent 100.0 3.9E-30 1.3E-34 256.6 21.5 204 268-480 14-218 (220)
66 3bor_A Human initiation factor 100.0 2.1E-30 7.2E-35 261.9 19.6 202 268-480 30-232 (237)
67 2pl3_A Probable ATP-dependent 100.0 1.4E-29 4.9E-34 255.4 25.3 206 268-481 25-231 (236)
68 1qde_A EIF4A, translation init 100.0 7.5E-30 2.6E-34 255.2 21.2 202 268-481 14-215 (224)
69 3mwy_W Chromo domain-containin 100.0 4.9E-29 1.7E-33 294.2 26.9 332 289-646 235-684 (800)
70 3dkp_A Probable ATP-dependent 100.0 2.9E-29 9.9E-34 254.6 18.8 206 268-482 25-240 (245)
71 1z3i_X Similar to RAD54-like; 100.0 6.6E-28 2.3E-32 277.8 31.9 336 290-646 55-528 (644)
72 3jux_A Protein translocase sub 100.0 3E-27 1E-31 264.0 32.2 328 286-658 72-606 (822)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.5E-27 8.4E-32 282.3 29.4 328 290-644 271-707 (1038)
74 2hjv_A ATP-dependent RNA helic 99.9 5.3E-24 1.8E-28 202.2 19.6 151 489-661 7-157 (163)
75 2ipc_A Preprotein translocase 99.9 4.1E-23 1.4E-27 234.7 30.0 130 286-433 76-215 (997)
76 1c4o_A DNA nucleotide excision 99.9 4E-23 1.4E-27 238.0 27.5 117 528-655 438-559 (664)
77 3eaq_A Heat resistant RNA depe 99.9 9.5E-24 3.3E-28 209.4 19.1 146 515-670 17-162 (212)
78 2p6n_A ATP-dependent RNA helic 99.9 8.5E-24 2.9E-28 206.1 18.4 178 472-674 10-188 (191)
79 2rb4_A ATP-dependent RNA helic 99.9 7.7E-24 2.6E-28 203.5 17.8 153 489-662 5-163 (175)
80 1t5i_A C_terminal domain of A 99.9 8.3E-24 2.8E-28 202.7 17.7 158 490-671 4-162 (172)
81 1fuk_A Eukaryotic initiation f 99.9 8.2E-24 2.8E-28 201.3 16.6 144 516-671 17-160 (165)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 1E-23 3.5E-28 204.5 16.8 162 488-673 16-178 (185)
83 2d7d_A Uvrabc system protein B 99.9 2.4E-22 8.1E-27 231.4 26.9 116 528-654 444-564 (661)
84 3i32_A Heat resistant RNA depe 99.9 4.3E-23 1.5E-27 214.7 17.7 148 515-672 14-161 (300)
85 3b6e_A Interferon-induced heli 99.9 3.3E-22 1.1E-26 197.7 13.3 168 286-461 29-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 1.3E-23 4.3E-28 201.0 0.0 139 515-663 16-154 (170)
87 2vl7_A XPD; helicase, unknown 99.8 5.6E-20 1.9E-24 207.4 21.9 109 518-642 374-518 (540)
88 3llm_A ATP-dependent RNA helic 99.8 1.1E-19 3.7E-24 183.0 15.8 172 287-477 58-230 (235)
89 3crv_A XPD/RAD3 related DNA he 99.8 1.4E-17 5E-22 188.3 30.1 128 290-433 3-186 (551)
90 1rif_A DAR protein, DNA helica 99.8 1.9E-19 6.6E-24 186.3 13.2 153 290-465 113-265 (282)
91 4a15_A XPD helicase, ATP-depen 99.7 2.4E-16 8.3E-21 179.9 24.7 82 290-383 3-88 (620)
92 2fz4_A DNA repair protein RAD2 99.7 6.8E-17 2.3E-21 162.7 15.9 139 289-465 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 1.8E-16 6.3E-21 162.6 10.7 123 515-646 96-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.5 9.8E-08 3.3E-12 108.7 7.7 145 292-461 151-298 (608)
95 3e1s_A Exodeoxyribonuclease V, 97.8 5.6E-05 1.9E-09 85.2 10.5 121 290-459 189-313 (574)
96 3upu_A ATP-dependent DNA helic 97.8 6.3E-05 2.2E-09 82.6 10.7 71 284-365 19-94 (459)
97 4b3f_X DNA-binding protein smu 97.7 4.1E-05 1.4E-09 87.8 8.6 67 290-368 189-256 (646)
98 2gk6_A Regulator of nonsense t 97.7 0.00027 9.3E-09 80.6 14.9 69 289-368 179-247 (624)
99 2xzl_A ATP-dependent helicase 97.7 0.00029 1E-08 82.4 15.1 69 289-368 359-427 (802)
100 2wjy_A Regulator of nonsense t 97.5 0.00051 1.7E-08 80.3 13.2 69 289-368 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 97.5 0.004 1.4E-07 71.1 19.7 71 289-369 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 97.2 0.0017 5.9E-08 66.9 10.9 123 515-651 109-242 (328)
103 2o0j_A Terminase, DNA packagin 96.8 0.006 2E-07 64.9 11.7 71 290-370 163-233 (385)
104 3ec2_A DNA replication protein 96.4 0.014 4.8E-07 54.8 9.8 20 304-323 37-56 (180)
105 3cpe_A Terminase, DNA packagin 96.3 0.018 6.1E-07 65.1 12.1 71 290-370 163-233 (592)
106 3vkw_A Replicase large subunit 96.3 0.0074 2.5E-07 65.0 8.0 107 306-460 162-268 (446)
107 2b8t_A Thymidine kinase; deoxy 95.9 0.007 2.4E-07 59.3 5.3 112 305-459 12-123 (223)
108 2orw_A Thymidine kinase; TMTK, 95.8 0.0037 1.3E-07 59.4 2.9 39 305-355 3-41 (184)
109 1l8q_A Chromosomal replication 95.7 0.082 2.8E-06 54.5 12.9 19 305-323 37-55 (324)
110 3te6_A Regulatory protein SIR3 95.4 0.16 5.5E-06 52.3 13.6 43 419-462 131-173 (318)
111 3bos_A Putative DNA replicatio 95.2 0.018 6.1E-07 56.2 5.4 20 304-323 51-70 (242)
112 2j9r_A Thymidine kinase; TK1, 95.0 0.016 5.5E-07 56.1 4.2 39 305-355 28-66 (214)
113 1uaa_A REP helicase, protein ( 94.9 0.031 1.1E-06 64.1 7.1 70 290-369 2-71 (673)
114 2chg_A Replication factor C sm 94.9 0.22 7.4E-06 47.3 12.0 40 419-460 101-140 (226)
115 1xx6_A Thymidine kinase; NESG, 94.8 0.035 1.2E-06 53.0 5.9 39 305-355 8-46 (191)
116 1pjr_A PCRA; DNA repair, DNA r 94.6 0.049 1.7E-06 63.0 7.7 71 289-369 10-80 (724)
117 2zpa_A Uncharacterized protein 94.5 0.049 1.7E-06 61.6 7.2 112 290-462 175-288 (671)
118 2orv_A Thymidine kinase; TP4A 94.2 0.076 2.6E-06 51.9 6.9 39 305-355 19-57 (234)
119 3e2i_A Thymidine kinase; Zn-bi 94.2 0.047 1.6E-06 52.8 5.2 39 305-355 28-66 (219)
120 3kl4_A SRP54, signal recogniti 94.1 0.2 6.9E-06 53.9 10.7 51 418-468 177-229 (433)
121 1a5t_A Delta prime, HOLB; zinc 94.1 0.087 3E-06 54.8 7.6 33 292-324 4-43 (334)
122 3n70_A Transport activator; si 94.0 0.26 8.8E-06 44.3 9.7 38 422-461 78-115 (145)
123 1w4r_A Thymidine kinase; type 93.8 0.056 1.9E-06 51.5 4.8 38 305-354 20-57 (195)
124 2z4s_A Chromosomal replication 93.7 0.48 1.6E-05 51.2 12.9 19 305-323 130-148 (440)
125 2kjq_A DNAA-related protein; s 93.5 0.098 3.4E-06 47.6 5.9 19 304-322 35-53 (149)
126 3u61_B DNA polymerase accessor 93.4 0.23 7.8E-06 51.0 9.3 40 419-459 104-143 (324)
127 2w58_A DNAI, primosome compone 93.3 0.2 6.8E-06 47.5 8.1 18 306-323 55-72 (202)
128 3u4q_A ATP-dependent helicase/ 93.3 0.083 2.8E-06 64.9 6.6 71 290-368 10-80 (1232)
129 2v1u_A Cell division control p 93.3 0.56 1.9E-05 48.9 12.3 19 305-323 44-62 (387)
130 3pfi_A Holliday junction ATP-d 92.9 1 3.5E-05 46.3 13.5 17 306-322 56-72 (338)
131 2qby_B CDC6 homolog 3, cell di 92.8 0.35 1.2E-05 50.7 9.9 18 306-323 46-63 (384)
132 1d2n_A N-ethylmaleimide-sensit 92.8 0.88 3E-05 45.3 12.4 18 306-323 65-82 (272)
133 1iqp_A RFCS; clamp loader, ext 92.7 0.68 2.3E-05 47.1 11.6 39 419-459 109-147 (327)
134 3eie_A Vacuolar protein sortin 92.5 0.76 2.6E-05 47.2 11.8 49 268-322 15-68 (322)
135 1fnn_A CDC6P, cell division co 92.4 0.36 1.2E-05 50.6 9.3 16 307-322 46-61 (389)
136 3dm5_A SRP54, signal recogniti 92.4 0.54 1.9E-05 50.6 10.6 51 420-470 182-232 (443)
137 2dr3_A UPF0273 protein PH0284; 92.1 0.43 1.5E-05 46.5 8.8 53 303-368 21-73 (247)
138 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.67 2.3E-05 44.5 9.5 23 302-324 20-42 (235)
139 1njg_A DNA polymerase III subu 91.6 2 6.8E-05 40.9 13.0 40 419-460 125-164 (250)
140 3syl_A Protein CBBX; photosynt 91.6 0.41 1.4E-05 48.6 8.3 18 306-323 68-85 (309)
141 1sxj_D Activator 1 41 kDa subu 91.4 1.2 4.2E-05 45.8 11.9 40 419-460 132-171 (353)
142 2qgz_A Helicase loader, putati 91.0 0.44 1.5E-05 48.9 7.7 19 305-323 152-170 (308)
143 2qby_A CDC6 homolog 1, cell di 90.7 0.83 2.8E-05 47.5 9.9 19 305-323 45-63 (386)
144 1hqc_A RUVB; extended AAA-ATPa 90.1 1.5 5.2E-05 44.6 11.0 18 305-322 38-55 (324)
145 1gm5_A RECG; helicase, replica 90.1 0.77 2.6E-05 53.2 9.6 79 529-612 417-496 (780)
146 1sxj_A Activator 1 95 kDa subu 90.1 1 3.5E-05 49.6 10.2 42 419-462 147-189 (516)
147 4b4t_J 26S protease regulatory 90.0 2.2 7.4E-05 45.3 12.2 54 266-322 143-199 (405)
148 1g5t_A COB(I)alamin adenosyltr 89.8 1.6 5.3E-05 41.5 9.8 135 306-468 29-169 (196)
149 2px0_A Flagellar biosynthesis 89.5 1.3 4.4E-05 45.0 9.7 21 304-324 104-124 (296)
150 2q6t_A DNAB replication FORK h 89.3 1.3 4.3E-05 47.9 10.0 113 303-434 198-324 (444)
151 2qp9_X Vacuolar protein sortin 89.1 1.5 5.2E-05 45.6 10.3 18 306-323 85-102 (355)
152 2r6a_A DNAB helicase, replicat 89.0 0.96 3.3E-05 49.0 8.9 28 302-329 200-227 (454)
153 1sxj_B Activator 1 37 kDa subu 89.0 0.9 3.1E-05 46.1 8.3 39 420-460 107-145 (323)
154 1sxj_C Activator 1 40 kDa subu 88.3 1.6 5.4E-05 45.0 9.6 39 419-459 109-147 (340)
155 1sxj_E Activator 1 40 kDa subu 88.2 2.8 9.6E-05 43.2 11.5 43 418-462 132-174 (354)
156 2gno_A DNA polymerase III, gam 87.7 1.3 4.5E-05 45.2 8.4 40 418-459 80-119 (305)
157 3oiy_A Reverse gyrase helicase 87.4 1.8 6.2E-05 45.8 9.7 80 527-612 62-145 (414)
158 2chq_A Replication factor C sm 87.3 0.92 3.2E-05 45.9 7.0 17 307-323 40-56 (319)
159 3pvs_A Replication-associated 87.0 0.58 2E-05 50.7 5.4 18 306-323 51-68 (447)
160 1w5s_A Origin recognition comp 86.6 1.8 6E-05 45.6 8.9 18 306-323 51-70 (412)
161 1ls1_A Signal recognition part 86.4 6.7 0.00023 39.6 12.8 52 419-470 179-230 (295)
162 1cr0_A DNA primase/helicase; R 83.8 1.1 3.7E-05 45.3 5.4 23 302-324 32-54 (296)
163 3hu3_A Transitional endoplasmi 83.5 4.5 0.00015 44.2 10.5 44 421-464 298-350 (489)
164 2fna_A Conserved hypothetical 83.4 27 0.00092 35.2 16.2 53 403-459 123-177 (357)
165 3bh0_A DNAB-like replicative h 83.0 1.5 5E-05 45.0 6.0 40 302-353 65-104 (315)
166 4a1f_A DNAB helicase, replicat 82.5 1.2 4E-05 46.3 5.0 40 302-353 43-82 (338)
167 1jr3_A DNA polymerase III subu 82.2 5.3 0.00018 41.2 10.1 40 418-459 117-156 (373)
168 3co5_A Putative two-component 82.2 0.92 3.1E-05 40.4 3.6 21 302-322 24-44 (143)
169 3cmu_A Protein RECA, recombina 82.1 1.9 6.6E-05 54.6 7.6 39 305-355 1427-1465(2050)
170 1vma_A Cell division protein F 81.5 7.9 0.00027 39.3 10.8 20 305-324 104-123 (306)
171 2eyq_A TRCF, transcription-rep 81.4 5.3 0.00018 48.4 11.0 80 528-612 651-731 (1151)
172 2oxc_A Probable ATP-dependent 81.3 3.6 0.00012 39.6 7.9 76 528-612 91-172 (230)
173 2z43_A DNA repair and recombin 80.6 2.6 9E-05 43.2 6.9 59 304-368 106-165 (324)
174 1t6n_A Probable ATP-dependent 80.3 7.5 0.00026 36.8 9.8 76 530-612 83-164 (220)
175 2ffh_A Protein (FFH); SRP54, s 79.2 20 0.00068 38.2 13.4 52 419-470 179-230 (425)
176 1vec_A ATP-dependent RNA helic 79.0 6.6 0.00023 36.6 8.8 76 529-612 71-152 (206)
177 3bgw_A DNAB-like replicative h 78.5 1.7 5.9E-05 46.8 4.9 39 303-353 195-233 (444)
178 4ddu_A Reverse gyrase; topoiso 78.5 4.7 0.00016 48.7 9.1 80 527-612 119-202 (1104)
179 2ehv_A Hypothetical protein PH 78.3 1.4 4.7E-05 42.8 3.8 23 302-324 27-49 (251)
180 3ber_A Probable ATP-dependent 78.1 11 0.00038 36.6 10.4 79 525-612 107-192 (249)
181 3e70_C DPA, signal recognition 77.4 25 0.00085 36.0 13.1 54 420-473 211-264 (328)
182 1qvr_A CLPB protein; coiled co 76.2 3.9 0.00013 48.0 7.4 19 306-324 192-210 (854)
183 1e9r_A Conjugal transfer prote 74.9 2.6 9E-05 45.1 5.1 44 304-359 52-95 (437)
184 3fe2_A Probable ATP-dependent 74.8 9.1 0.00031 36.9 8.6 75 529-612 102-182 (242)
185 2hjv_A ATP-dependent RNA helic 74.5 15 0.00051 33.0 9.5 73 345-428 35-111 (163)
186 3hjh_A Transcription-repair-co 74.1 10 0.00034 41.2 9.5 73 518-612 372-444 (483)
187 2yhs_A FTSY, cell division pro 73.9 16 0.00055 39.7 10.9 53 420-472 375-433 (503)
188 3io5_A Recombination and repai 73.6 4.4 0.00015 41.5 6.0 90 307-433 30-124 (333)
189 3pxi_A Negative regulator of g 73.0 9.3 0.00032 44.0 9.5 17 307-323 523-539 (758)
190 1r6b_X CLPA protein; AAA+, N-t 72.5 6.6 0.00023 45.3 8.1 19 305-323 207-225 (758)
191 1j8m_F SRP54, signal recogniti 72.5 21 0.00071 35.9 10.9 52 419-470 179-232 (297)
192 2v3c_C SRP54, signal recogniti 72.4 5.5 0.00019 42.7 6.8 21 306-326 100-120 (432)
193 1fuk_A Eukaryotic initiation f 72.4 21 0.0007 32.1 9.9 74 345-429 30-107 (165)
194 4b4t_M 26S protease regulatory 72.3 2.1 7.1E-05 45.9 3.4 54 266-322 176-232 (434)
195 2p6n_A ATP-dependent RNA helic 72.0 18 0.00061 33.7 9.6 73 345-428 54-130 (191)
196 3cf2_A TER ATPase, transitiona 71.9 10 0.00036 43.8 9.4 53 267-322 473-528 (806)
197 1t5i_A C_terminal domain of A 71.8 31 0.0011 31.2 11.1 73 345-428 31-107 (172)
198 3cf0_A Transitional endoplasmi 70.9 5 0.00017 40.5 5.9 19 304-322 48-66 (301)
199 3bor_A Human initiation factor 70.9 8 0.00028 37.2 7.2 77 528-612 97-179 (237)
200 3hr8_A Protein RECA; alpha and 70.5 2.2 7.5E-05 44.5 3.0 40 304-355 60-99 (356)
201 2xxa_A Signal recognition part 70.1 19 0.00065 38.4 10.4 21 306-326 101-121 (433)
202 3b85_A Phosphate starvation-in 69.6 4.6 0.00016 38.6 4.9 31 292-322 9-39 (208)
203 3uk6_A RUVB-like 2; hexameric 68.9 5.5 0.00019 41.2 5.7 19 305-323 70-88 (368)
204 1xti_A Probable ATP-dependent 68.8 15 0.0005 37.9 9.2 77 529-612 76-158 (391)
205 2gxq_A Heat resistant RNA depe 68.0 17 0.00059 33.6 8.6 74 528-612 71-150 (207)
206 3cf2_A TER ATPase, transitiona 67.9 19 0.00064 41.7 10.3 17 306-322 239-255 (806)
207 2i1q_A DNA repair and recombin 67.8 4.4 0.00015 41.3 4.7 24 304-327 97-120 (322)
208 2zts_A Putative uncharacterize 67.8 3.2 0.00011 40.1 3.5 27 304-330 29-55 (251)
209 2pl3_A Probable ATP-dependent 67.6 13 0.00045 35.5 7.9 75 528-612 96-177 (236)
210 3jvv_A Twitching mobility prot 67.3 4.4 0.00015 42.2 4.6 19 304-322 122-140 (356)
211 3ly5_A ATP-dependent RNA helic 67.1 26 0.00089 34.2 10.1 75 529-612 126-207 (262)
212 1p9r_A General secretion pathw 67.1 5.5 0.00019 42.4 5.4 18 304-321 166-183 (418)
213 1qde_A EIF4A, translation init 66.9 7.3 0.00025 36.9 5.8 75 528-612 81-161 (224)
214 1q57_A DNA primase/helicase; d 66.8 8.4 0.00029 42.0 6.9 26 302-327 239-264 (503)
215 1xwi_A SKD1 protein; VPS4B, AA 66.5 7.3 0.00025 39.8 6.0 49 268-322 9-62 (322)
216 3iuy_A Probable ATP-dependent 66.0 13 0.00045 35.3 7.5 75 528-612 93-173 (228)
217 3iij_A Coilin-interacting nucl 65.8 3.4 0.00012 37.9 3.0 21 303-323 9-29 (180)
218 3h4m_A Proteasome-activating n 65.5 3.1 0.0001 41.4 2.8 52 268-322 14-68 (285)
219 2v1x_A ATP-dependent DNA helic 64.8 18 0.00061 40.3 9.2 59 529-596 84-144 (591)
220 1kgd_A CASK, peripheral plasma 64.6 3.5 0.00012 38.1 2.8 19 304-322 4-22 (180)
221 4ag6_A VIRB4 ATPase, type IV s 64.4 6.4 0.00022 41.3 5.3 41 304-356 34-74 (392)
222 3fmo_B ATP-dependent RNA helic 64.3 5.8 0.0002 40.1 4.7 73 529-612 162-241 (300)
223 3cmu_A Protein RECA, recombina 64.2 9.3 0.00032 48.6 7.2 46 304-362 1080-1125(2050)
224 2rb4_A ATP-dependent RNA helic 64.2 27 0.00093 31.6 9.0 73 345-428 34-110 (175)
225 1oyw_A RECQ helicase, ATP-depe 64.1 13 0.00044 40.7 7.8 59 529-596 65-123 (523)
226 1jbk_A CLPB protein; beta barr 64.1 5.7 0.0002 36.0 4.3 19 305-323 43-61 (195)
227 2j37_W Signal recognition part 63.8 24 0.00081 38.5 9.7 18 307-324 103-120 (504)
228 3vaa_A Shikimate kinase, SK; s 63.7 3.7 0.00013 38.5 2.9 21 304-324 24-44 (199)
229 1wrb_A DJVLGB; RNA helicase, D 63.6 21 0.00071 34.5 8.5 75 529-612 100-180 (253)
230 2oap_1 GSPE-2, type II secreti 62.8 3.4 0.00011 45.4 2.7 29 293-321 247-276 (511)
231 3b9p_A CG5977-PA, isoform A; A 62.2 9.5 0.00033 38.0 5.9 18 305-322 54-71 (297)
232 3trf_A Shikimate kinase, SK; a 62.0 4.1 0.00014 37.4 2.8 20 305-324 5-24 (185)
233 2p65_A Hypothetical protein PF 62.0 4.3 0.00015 36.8 3.0 19 305-323 43-61 (187)
234 2gza_A Type IV secretion syste 61.9 4.4 0.00015 42.2 3.4 20 302-321 172-191 (361)
235 2bjv_A PSP operon transcriptio 61.8 6.6 0.00023 38.5 4.5 19 304-322 28-46 (265)
236 2eyu_A Twitching motility prot 61.7 3.5 0.00012 40.9 2.4 21 302-322 22-42 (261)
237 3a8t_A Adenylate isopentenyltr 61.5 3.9 0.00013 42.2 2.7 19 306-324 41-59 (339)
238 3cmw_A Protein RECA, recombina 61.4 10 0.00034 47.6 6.8 89 306-434 1432-1523(1706)
239 2c9o_A RUVB-like 1; hexameric 61.4 9 0.00031 41.2 5.8 19 305-323 63-81 (456)
240 2jgn_A DBX, DDX3, ATP-dependen 60.1 23 0.00079 32.6 7.7 71 345-426 46-120 (185)
241 1ofh_A ATP-dependent HSL prote 60.1 16 0.00055 36.2 7.2 19 305-323 50-68 (310)
242 3hws_A ATP-dependent CLP prote 59.8 11 0.00038 38.9 6.0 20 304-323 50-69 (363)
243 1gku_B Reverse gyrase, TOP-RG; 59.6 14 0.00047 44.4 7.4 93 528-627 98-202 (1054)
244 2j41_A Guanylate kinase; GMP, 59.4 4.8 0.00016 37.6 2.8 20 303-322 4-23 (207)
245 2qor_A Guanylate kinase; phosp 59.3 4.9 0.00017 37.8 2.9 21 302-322 9-29 (204)
246 3tau_A Guanylate kinase, GMP k 59.3 4.9 0.00017 38.1 2.9 19 304-322 7-25 (208)
247 1lvg_A Guanylate kinase, GMP k 59.2 5.1 0.00017 37.7 3.0 19 304-322 3-21 (198)
248 3d8b_A Fidgetin-like protein 1 59.1 11 0.00039 38.9 5.9 19 305-323 117-135 (357)
249 4b4t_L 26S protease subunit RP 59.1 4.3 0.00015 43.5 2.7 54 266-322 176-232 (437)
250 1lv7_A FTSH; alpha/beta domain 59.0 9.3 0.00032 37.2 5.0 17 306-322 46-62 (257)
251 1qhx_A CPT, protein (chloramph 59.0 5 0.00017 36.5 2.8 19 305-323 3-21 (178)
252 4b4t_I 26S protease regulatory 57.9 6.2 0.00021 42.1 3.6 54 266-322 177-233 (437)
253 3tr0_A Guanylate kinase, GMP k 57.8 5.2 0.00018 37.3 2.8 19 304-322 6-24 (205)
254 3exa_A TRNA delta(2)-isopenten 57.8 4.5 0.00015 41.3 2.4 19 306-324 4-22 (322)
255 1zp6_A Hypothetical protein AT 57.7 4.2 0.00014 37.6 2.0 21 302-322 6-26 (191)
256 3nbx_X ATPase RAVA; AAA+ ATPas 57.4 5 0.00017 43.9 2.9 28 295-322 31-58 (500)
257 2ze6_A Isopentenyl transferase 57.4 5.1 0.00017 39.4 2.7 17 307-323 3-19 (253)
258 2db3_A ATP-dependent RNA helic 57.3 31 0.0011 36.5 9.2 75 529-612 129-209 (434)
259 3lw7_A Adenylate kinase relate 57.2 4.3 0.00015 36.5 2.0 17 307-323 3-19 (179)
260 1kht_A Adenylate kinase; phosp 57.2 5.5 0.00019 36.6 2.8 19 305-323 3-21 (192)
261 3i5x_A ATP-dependent RNA helic 57.0 70 0.0024 34.8 12.4 78 344-429 338-419 (563)
262 1kag_A SKI, shikimate kinase I 56.7 6.4 0.00022 35.6 3.1 18 305-322 4-21 (173)
263 2r44_A Uncharacterized protein 56.6 5 0.00017 40.9 2.6 25 298-322 39-63 (331)
264 2pt7_A CAG-ALFA; ATPase, prote 56.5 4.7 0.00016 41.5 2.4 20 302-321 168-187 (330)
265 3foz_A TRNA delta(2)-isopenten 56.5 5.3 0.00018 40.7 2.7 18 307-324 12-29 (316)
266 2qmh_A HPR kinase/phosphorylas 56.5 5.3 0.00018 38.0 2.5 18 305-322 34-51 (205)
267 1u0j_A DNA replication protein 56.1 17 0.00059 36.0 6.3 43 278-323 74-122 (267)
268 4b4t_H 26S protease regulatory 55.9 4.7 0.00016 43.4 2.2 54 266-322 204-260 (467)
269 3eaq_A Heat resistant RNA depe 55.6 41 0.0014 31.6 8.8 71 345-426 31-105 (212)
270 4f4c_A Multidrug resistance pr 55.6 5.1 0.00018 49.3 2.9 19 304-322 1104-1122(1321)
271 1ojl_A Transcriptional regulat 55.5 6 0.0002 40.1 2.9 19 304-322 24-42 (304)
272 1fuu_A Yeast initiation factor 55.0 30 0.001 35.4 8.5 75 528-612 88-168 (394)
273 2i4i_A ATP-dependent RNA helic 54.9 54 0.0018 33.9 10.5 72 344-426 275-350 (417)
274 4b4t_K 26S protease regulatory 54.9 5.7 0.0002 42.4 2.7 54 266-322 167-223 (428)
275 1y63_A LMAJ004144AAA protein; 54.6 6.6 0.00023 36.2 2.9 20 304-323 9-28 (184)
276 3ney_A 55 kDa erythrocyte memb 54.3 6.6 0.00023 37.1 2.8 20 303-322 17-36 (197)
277 3cm0_A Adenylate kinase; ATP-b 53.5 5.1 0.00017 36.8 1.9 21 304-324 3-23 (186)
278 1ixz_A ATP-dependent metallopr 53.3 6.2 0.00021 38.5 2.5 51 268-322 13-66 (254)
279 3kb2_A SPBC2 prophage-derived 53.0 7 0.00024 35.1 2.7 17 307-323 3-19 (173)
280 3crm_A TRNA delta(2)-isopenten 52.9 6.5 0.00022 40.3 2.7 18 307-324 7-24 (323)
281 3nwj_A ATSK2; P loop, shikimat 52.8 8.5 0.00029 37.8 3.4 22 303-324 46-67 (250)
282 3a00_A Guanylate kinase, GMP k 52.5 8.1 0.00028 35.7 3.1 17 306-322 2-18 (186)
283 1z6g_A Guanylate kinase; struc 52.5 8.2 0.00028 36.9 3.2 20 303-322 21-40 (218)
284 2qz4_A Paraplegin; AAA+, SPG7, 52.4 6.8 0.00023 38.1 2.7 19 305-323 39-57 (262)
285 3sqw_A ATP-dependent RNA helic 51.9 95 0.0032 34.0 12.4 77 345-429 288-368 (579)
286 3vfd_A Spastin; ATPase, microt 51.5 18 0.00062 37.7 6.0 19 305-323 148-166 (389)
287 2ewv_A Twitching motility prot 51.3 6.2 0.00021 41.3 2.3 20 303-322 134-153 (372)
288 1rj9_A FTSY, signal recognitio 51.3 14 0.00047 37.5 4.8 18 305-322 102-119 (304)
289 2ius_A DNA translocase FTSK; n 50.9 12 0.0004 41.0 4.4 27 304-330 166-192 (512)
290 1ly1_A Polynucleotide kinase; 50.7 8 0.00027 35.0 2.7 16 307-322 4-19 (181)
291 1w36_B RECB, exodeoxyribonucle 50.3 16 0.00056 44.3 6.1 62 307-368 18-79 (1180)
292 3pey_A ATP-dependent RNA helic 50.3 2E+02 0.0068 28.9 13.9 94 345-449 243-341 (395)
293 1iy2_A ATP-dependent metallopr 49.9 6.8 0.00023 38.9 2.2 51 268-322 37-90 (278)
294 3d3q_A TRNA delta(2)-isopenten 49.9 7.8 0.00027 40.0 2.7 18 307-324 9-26 (340)
295 1zuh_A Shikimate kinase; alpha 49.8 8.4 0.00029 34.7 2.7 19 306-324 8-26 (168)
296 4eun_A Thermoresistant glucoki 49.6 8.8 0.0003 35.9 2.9 20 304-323 28-47 (200)
297 2x8a_A Nuclear valosin-contain 49.6 4.7 0.00016 40.2 1.0 52 268-322 7-61 (274)
298 2v6i_A RNA helicase; membrane, 49.5 21 0.00072 37.9 6.2 55 345-404 171-225 (431)
299 2zan_A Vacuolar protein sortin 49.4 20 0.0007 38.2 6.1 18 305-322 167-184 (444)
300 1knq_A Gluconate kinase; ALFA/ 49.3 7.7 0.00026 35.2 2.4 19 305-323 8-26 (175)
301 2zr9_A Protein RECA, recombina 49.1 12 0.00042 38.6 4.1 26 303-328 59-84 (349)
302 4gp7_A Metallophosphoesterase; 49.0 5.5 0.00019 36.4 1.3 20 304-323 8-27 (171)
303 2iut_A DNA translocase FTSK; n 49.0 12 0.00042 41.3 4.3 26 305-330 214-239 (574)
304 2d7d_A Uvrabc system protein B 49.0 3.1E+02 0.011 30.6 16.1 93 345-448 445-541 (661)
305 1nlf_A Regulatory protein REPA 48.7 20 0.00069 35.4 5.6 26 301-326 26-51 (279)
306 1wp9_A ATP-dependent RNA helic 48.3 54 0.0019 34.2 9.3 75 528-612 51-131 (494)
307 2c95_A Adenylate kinase 1; tra 48.3 9.8 0.00033 35.0 2.9 21 304-324 8-28 (196)
308 1via_A Shikimate kinase; struc 48.2 9.9 0.00034 34.5 2.9 18 307-324 6-23 (175)
309 1s2m_A Putative ATP-dependent 48.0 48 0.0016 34.1 8.7 76 528-612 88-169 (400)
310 1um8_A ATP-dependent CLP prote 47.9 9.6 0.00033 39.6 3.1 19 305-323 72-90 (376)
311 1znw_A Guanylate kinase, GMP k 47.8 9.8 0.00034 35.8 2.9 22 301-322 16-37 (207)
312 2v54_A DTMP kinase, thymidylat 47.8 9.1 0.00031 35.6 2.7 20 304-323 3-22 (204)
313 1u94_A RECA protein, recombina 47.5 14 0.00047 38.4 4.2 26 303-328 61-86 (356)
314 1tev_A UMP-CMP kinase; ploop, 47.5 8.3 0.00028 35.4 2.3 18 306-323 4-21 (196)
315 2j0s_A ATP-dependent RNA helic 47.5 64 0.0022 33.2 9.6 76 528-612 104-185 (410)
316 1s96_A Guanylate kinase, GMP k 47.4 9.9 0.00034 36.5 2.9 21 302-322 13-33 (219)
317 3t15_A Ribulose bisphosphate c 47.0 8.8 0.0003 38.5 2.6 18 306-323 37-54 (293)
318 3uie_A Adenylyl-sulfate kinase 46.9 8.8 0.0003 35.9 2.4 21 304-324 24-44 (200)
319 3nwn_A Kinesin-like protein KI 46.9 10 0.00035 39.4 3.0 26 297-322 95-122 (359)
320 2l82_A Designed protein OR32; 46.3 1.3E+02 0.0043 25.0 9.3 48 532-584 5-52 (162)
321 3t61_A Gluconokinase; PSI-biol 46.2 10 0.00034 35.4 2.7 18 306-323 19-36 (202)
322 1zd8_A GTP:AMP phosphotransfer 46.1 10 0.00035 36.2 2.8 19 305-323 7-25 (227)
323 3eph_A TRNA isopentenyltransfe 46.1 9.5 0.00032 40.3 2.7 18 307-324 4-21 (409)
324 3lnc_A Guanylate kinase, GMP k 45.9 7.7 0.00026 37.2 1.8 20 303-322 25-44 (231)
325 1yks_A Genome polyprotein [con 45.7 23 0.00078 37.8 5.7 69 345-425 177-245 (440)
326 3u4q_B ATP-dependent helicase/ 45.5 15 0.0005 44.7 4.7 50 308-367 4-53 (1166)
327 2cvh_A DNA repair and recombin 45.5 11 0.00037 35.5 2.8 23 303-325 18-40 (220)
328 2qt1_A Nicotinamide riboside k 45.5 7.6 0.00026 36.4 1.7 24 300-323 16-39 (207)
329 1ex7_A Guanylate kinase; subst 45.4 9.4 0.00032 35.7 2.3 16 306-321 2-17 (186)
330 3b9q_A Chloroplast SRP recepto 45.2 16 0.00055 36.9 4.2 19 304-322 99-117 (302)
331 1f9v_A Kinesin-like protein KA 44.7 15 0.0005 38.1 3.8 26 297-322 75-102 (347)
332 1c4o_A DNA nucleotide excision 44.6 2.6E+02 0.009 31.2 14.6 108 345-463 439-551 (664)
333 1e6c_A Shikimate kinase; phosp 44.3 13 0.00043 33.5 3.0 19 306-324 3-21 (173)
334 1bg2_A Kinesin; motor protein, 44.2 14 0.00046 37.9 3.4 26 297-322 68-95 (325)
335 2r8r_A Sensor protein; KDPD, P 44.1 19 0.00065 34.8 4.3 23 307-329 8-30 (228)
336 2rhm_A Putative kinase; P-loop 44.0 11 0.00039 34.5 2.7 19 305-323 5-23 (193)
337 2iyv_A Shikimate kinase, SK; t 43.8 14 0.00046 33.8 3.2 19 306-324 3-21 (184)
338 2plr_A DTMP kinase, probable t 43.8 10 0.00035 35.4 2.3 20 304-323 3-22 (213)
339 4fcw_A Chaperone protein CLPB; 43.6 10 0.00036 37.8 2.5 18 306-323 48-65 (311)
340 3dl0_A Adenylate kinase; phosp 43.4 12 0.0004 35.3 2.7 18 307-324 2-19 (216)
341 2bdt_A BH3686; alpha-beta prot 43.4 12 0.00041 34.4 2.7 17 307-323 4-20 (189)
342 3fb4_A Adenylate kinase; psych 43.4 12 0.0004 35.3 2.7 18 307-324 2-19 (216)
343 4akg_A Glutathione S-transfera 43.0 22 0.00074 46.8 5.7 48 277-325 892-943 (2695)
344 3t0q_A AGR253WP; kinesin, alph 43.0 14 0.00049 38.2 3.4 26 297-322 76-103 (349)
345 3dc4_A Kinesin-like protein NO 42.8 13 0.00046 38.3 3.2 25 298-322 86-112 (344)
346 2l8b_A Protein TRAI, DNA helic 42.8 18 0.0006 33.8 3.6 58 292-360 36-95 (189)
347 1tf5_A Preprotein translocase 42.7 47 0.0016 38.4 7.9 77 525-612 120-209 (844)
348 1nks_A Adenylate kinase; therm 42.6 12 0.00042 34.1 2.6 17 307-323 3-19 (194)
349 1v8k_A Kinesin-like protein KI 42.5 14 0.00047 39.1 3.3 25 298-322 146-172 (410)
350 1qf9_A UMP/CMP kinase, protein 42.4 12 0.00043 34.1 2.7 17 307-323 8-24 (194)
351 3vkg_A Dynein heavy chain, cyt 42.4 21 0.00073 47.5 5.5 48 277-324 875-925 (3245)
352 1t5c_A CENP-E protein, centrom 42.3 13 0.00045 38.4 3.0 25 298-322 69-95 (349)
353 1xp8_A RECA protein, recombina 42.3 18 0.00062 37.6 4.1 25 303-327 72-96 (366)
354 1n0w_A DNA repair protein RAD5 42.2 12 0.00041 35.7 2.6 24 303-326 22-45 (243)
355 1cke_A CK, MSSA, protein (cyti 42.1 13 0.00043 35.3 2.7 19 306-324 6-24 (227)
356 1nij_A Hypothetical protein YJ 42.0 20 0.00069 36.3 4.4 15 307-321 6-20 (318)
357 3eiq_A Eukaryotic initiation f 41.9 67 0.0023 33.0 8.7 77 528-612 107-189 (414)
358 3b6u_A Kinesin-like protein KI 41.9 15 0.00051 38.4 3.4 26 297-322 92-119 (372)
359 4etp_A Kinesin-like protein KA 41.8 15 0.00051 38.8 3.4 25 298-322 132-158 (403)
360 1aky_A Adenylate kinase; ATP:A 41.8 13 0.00046 35.1 2.8 20 305-324 4-23 (220)
361 2zfi_A Kinesin-like protein KI 41.8 14 0.00047 38.6 3.1 26 297-322 80-107 (366)
362 1goj_A Kinesin, kinesin heavy 41.7 15 0.0005 38.2 3.3 25 298-322 72-98 (355)
363 3tbk_A RIG-I helicase domain; 41.7 28 0.00094 37.7 5.8 75 529-612 52-133 (555)
364 1in4_A RUVB, holliday junction 41.7 13 0.00045 37.9 3.0 17 306-322 52-68 (334)
365 2h58_A Kinesin-like protein KI 41.7 16 0.00053 37.6 3.4 25 298-322 72-98 (330)
366 2vvg_A Kinesin-2; motor protei 41.7 16 0.00053 37.9 3.4 25 298-322 81-107 (350)
367 3sr0_A Adenylate kinase; phosp 41.7 13 0.00045 35.3 2.7 18 307-324 2-19 (206)
368 2y65_A Kinesin, kinesin heavy 41.7 15 0.00051 38.3 3.3 25 298-322 76-102 (365)
369 1hv8_A Putative ATP-dependent 41.6 61 0.0021 32.6 8.1 75 528-612 73-153 (367)
370 1zak_A Adenylate kinase; ATP:A 41.6 14 0.00048 35.0 2.9 19 306-324 6-24 (222)
371 4a14_A Kinesin, kinesin-like p 41.5 15 0.00051 37.9 3.3 25 298-322 75-101 (344)
372 1m7g_A Adenylylsulfate kinase; 41.4 15 0.00052 34.5 3.1 30 293-323 14-43 (211)
373 2r62_A Cell division protease 41.3 7.4 0.00025 38.2 0.9 19 305-323 44-62 (268)
374 3lre_A Kinesin-like protein KI 41.3 15 0.00051 38.1 3.3 25 298-322 97-123 (355)
375 3gbj_A KIF13B protein; kinesin 41.2 16 0.00053 38.0 3.4 26 297-322 83-110 (354)
376 3c8u_A Fructokinase; YP_612366 41.1 13 0.00044 35.0 2.6 19 304-322 21-39 (208)
377 2fsf_A Preprotein translocase 41.1 49 0.0017 38.2 7.7 75 527-612 113-200 (853)
378 1gvn_B Zeta; postsegregational 41.0 14 0.00047 37.0 2.9 17 306-322 34-50 (287)
379 1sky_E F1-ATPase, F1-ATP synth 41.0 38 0.0013 36.5 6.4 27 298-324 144-170 (473)
380 3fht_A ATP-dependent RNA helic 41.0 71 0.0024 32.7 8.7 73 345-428 266-342 (412)
381 2nr8_A Kinesin-like protein KI 40.9 16 0.00054 37.9 3.4 26 297-322 94-121 (358)
382 3i32_A Heat resistant RNA depe 40.9 73 0.0025 31.9 8.3 71 345-426 28-102 (300)
383 2bwj_A Adenylate kinase 5; pho 40.8 14 0.00046 34.1 2.7 19 305-323 12-30 (199)
384 4a74_A DNA repair and recombin 40.8 11 0.00036 35.8 1.9 22 302-323 22-43 (231)
385 1x88_A Kinesin-like protein KI 40.7 13 0.00045 38.6 2.7 26 297-322 79-106 (359)
386 3kta_A Chromosome segregation 40.4 15 0.00051 33.4 2.8 16 307-322 28-43 (182)
387 2oca_A DAR protein, ATP-depend 40.3 1.9E+02 0.0065 30.7 12.3 75 346-430 348-426 (510)
388 2pez_A Bifunctional 3'-phospho 40.1 13 0.00045 33.8 2.4 20 304-323 4-23 (179)
389 2wbe_C Bipolar kinesin KRP-130 40.1 14 0.00048 38.6 2.8 26 297-322 91-118 (373)
390 3tlx_A Adenylate kinase 2; str 40.0 16 0.00054 35.5 3.1 20 305-324 29-48 (243)
391 1f2t_A RAD50 ABC-ATPase; DNA d 40.0 12 0.00041 33.4 2.0 15 307-321 25-39 (149)
392 2cdn_A Adenylate kinase; phosp 40.0 15 0.00051 34.1 2.8 18 306-323 21-38 (201)
393 2pt5_A Shikimate kinase, SK; a 39.9 15 0.0005 32.9 2.7 17 307-323 2-18 (168)
394 1ye8_A Protein THEP1, hypothet 39.9 15 0.0005 33.9 2.7 49 418-468 97-147 (178)
395 4a2p_A RIG-I, retinoic acid in 39.8 44 0.0015 36.1 7.0 75 529-612 55-136 (556)
396 1c9k_A COBU, adenosylcobinamid 39.8 14 0.00046 34.4 2.4 16 308-323 2-17 (180)
397 2jaq_A Deoxyguanosine kinase; 39.7 15 0.0005 34.0 2.7 17 307-323 2-18 (205)
398 3dkp_A Probable ATP-dependent 39.7 24 0.00081 33.8 4.3 76 529-612 98-181 (245)
399 1g8p_A Magnesium-chelatase 38 39.6 12 0.00041 38.1 2.3 18 305-322 45-62 (350)
400 2og2_A Putative signal recogni 39.5 21 0.00073 37.0 4.1 19 304-322 156-174 (359)
401 2vli_A Antibiotic resistance p 39.4 13 0.00046 33.6 2.3 20 305-324 5-24 (183)
402 3umf_A Adenylate kinase; rossm 39.3 15 0.00052 35.2 2.7 20 305-324 29-48 (217)
403 1ak2_A Adenylate kinase isoenz 39.2 16 0.00054 35.0 2.9 20 305-324 16-35 (233)
404 4a2q_A RIG-I, retinoic acid in 39.0 55 0.0019 37.7 8.0 75 529-612 296-377 (797)
405 1q0u_A Bstdead; DEAD protein, 38.9 21 0.00071 33.6 3.7 76 529-612 72-156 (219)
406 2yvu_A Probable adenylyl-sulfa 38.8 14 0.00048 33.8 2.4 21 304-324 12-32 (186)
407 2wwf_A Thymidilate kinase, put 38.7 15 0.00051 34.3 2.6 21 304-324 9-29 (212)
408 3cob_A Kinesin heavy chain-lik 38.7 13 0.00046 38.7 2.4 25 298-322 71-97 (369)
409 1e4v_A Adenylate kinase; trans 38.7 15 0.00052 34.6 2.6 17 307-323 2-18 (214)
410 3bfn_A Kinesin-like protein KI 38.6 14 0.00048 38.8 2.6 23 300-322 92-116 (388)
411 2heh_A KIF2C protein; kinesin, 38.3 17 0.00059 38.1 3.1 25 298-322 126-152 (387)
412 1ukz_A Uridylate kinase; trans 38.2 16 0.00055 33.9 2.7 16 307-322 17-32 (203)
413 2v9p_A Replication protein E1; 38.1 16 0.00053 37.1 2.7 20 303-322 124-143 (305)
414 3asz_A Uridine kinase; cytidin 38.1 14 0.00049 34.5 2.4 18 305-322 6-23 (211)
415 1jjv_A Dephospho-COA kinase; P 38.0 16 0.00055 34.0 2.7 17 307-323 4-20 (206)
416 3be4_A Adenylate kinase; malar 38.0 17 0.00058 34.4 2.9 20 305-324 5-24 (217)
417 2r2a_A Uncharacterized protein 37.9 18 0.00063 34.0 3.1 42 420-461 87-132 (199)
418 2owm_A Nckin3-434, related to 37.9 17 0.00058 38.9 3.1 26 297-322 127-154 (443)
419 1nn5_A Similar to deoxythymidy 37.9 16 0.00056 34.0 2.8 21 304-324 8-28 (215)
420 1uf9_A TT1252 protein; P-loop, 37.9 16 0.00054 33.7 2.6 18 307-324 10-27 (203)
421 2rep_A Kinesin-like protein KI 37.8 18 0.00062 37.8 3.2 25 298-322 107-133 (376)
422 3u06_A Protein claret segregat 37.7 17 0.00059 38.5 3.1 26 297-322 129-156 (412)
423 4e22_A Cytidylate kinase; P-lo 37.7 17 0.00057 35.5 2.9 20 304-323 26-45 (252)
424 3pxg_A Negative regulator of g 37.4 21 0.00073 38.4 3.9 20 305-324 201-220 (468)
425 2z0m_A 337AA long hypothetical 37.4 57 0.0019 32.4 7.0 74 529-612 56-135 (337)
426 2if2_A Dephospho-COA kinase; a 37.4 16 0.00056 33.8 2.7 16 307-322 3-18 (204)
427 1nkt_A Preprotein translocase 37.3 66 0.0023 37.4 8.0 77 525-612 148-237 (922)
428 3k1j_A LON protease, ATP-depen 37.2 22 0.00076 39.6 4.1 23 301-323 56-78 (604)
429 3tif_A Uncharacterized ABC tra 37.2 13 0.00044 36.0 1.9 18 304-321 30-47 (235)
430 3f9v_A Minichromosome maintena 37.0 18 0.00061 40.4 3.3 16 307-322 329-344 (595)
431 2i3b_A HCR-ntpase, human cance 36.8 20 0.00067 33.4 3.1 42 418-462 103-145 (189)
432 2pbr_A DTMP kinase, thymidylat 36.4 18 0.00061 33.0 2.7 18 307-324 2-19 (195)
433 1tue_A Replication protein E1; 36.3 14 0.00049 35.2 2.0 43 278-322 29-75 (212)
434 2wv9_A Flavivirin protease NS2 36.0 38 0.0013 38.3 5.8 68 345-425 410-478 (673)
435 2z0h_A DTMP kinase, thymidylat 35.7 19 0.00064 33.1 2.7 17 308-324 3-19 (197)
436 1zu4_A FTSY; GTPase, signal re 35.4 28 0.00094 35.5 4.1 20 305-324 105-124 (320)
437 2ipc_A Preprotein translocase 35.3 79 0.0027 36.9 8.1 62 525-597 116-177 (997)
438 2xb4_A Adenylate kinase; ATP-b 34.9 19 0.00065 34.3 2.7 18 307-324 2-19 (223)
439 1g41_A Heat shock protein HSLU 34.8 20 0.00067 38.4 3.0 18 305-322 50-67 (444)
440 2bbw_A Adenylate kinase 4, AK4 34.7 19 0.00066 34.7 2.7 18 305-322 27-44 (246)
441 3qf7_A RAD50; ABC-ATPase, ATPa 34.7 19 0.00066 37.3 2.9 16 307-322 25-40 (365)
442 1v5w_A DMC1, meiotic recombina 34.4 24 0.00083 36.2 3.6 23 304-326 121-143 (343)
443 3eme_A Rhodanese-like domain p 34.2 26 0.0009 28.6 3.1 36 528-568 55-90 (103)
444 2cbz_A Multidrug resistance-as 34.1 15 0.00053 35.5 1.9 19 303-321 29-47 (237)
445 3foj_A Uncharacterized protein 34.0 27 0.00094 28.3 3.2 36 528-568 55-90 (100)
446 3b6e_A Interferon-induced heli 33.9 48 0.0016 30.5 5.4 75 528-612 81-168 (216)
447 3tqc_A Pantothenate kinase; bi 33.8 43 0.0015 34.1 5.2 15 308-322 95-109 (321)
448 3nzo_A UDP-N-acetylglucosamine 33.7 2.2E+02 0.0075 29.4 11.1 89 296-402 26-118 (399)
449 3a4m_A L-seryl-tRNA(SEC) kinas 33.7 20 0.00069 35.0 2.7 19 306-324 5-23 (260)
450 3auy_A DNA double-strand break 33.7 16 0.00053 38.1 2.0 15 307-321 27-41 (371)
451 1ry6_A Internal kinesin; kines 33.4 22 0.00077 36.8 3.1 19 304-322 82-102 (360)
452 1sgw_A Putative ABC transporte 33.0 18 0.00061 34.5 2.1 19 303-321 33-51 (214)
453 3gk5_A Uncharacterized rhodane 33.0 27 0.00092 29.0 3.0 36 528-568 54-89 (108)
454 2p5t_B PEZT; postsegregational 32.9 18 0.0006 35.3 2.1 18 306-323 33-50 (253)
455 1vht_A Dephospho-COA kinase; s 32.2 22 0.00077 33.4 2.7 18 306-323 5-22 (218)
456 2jlq_A Serine protease subunit 31.8 51 0.0018 35.0 5.8 67 346-425 189-256 (451)
457 3gfo_A Cobalt import ATP-bindi 31.5 17 0.00059 36.2 1.8 18 304-321 33-50 (275)
458 4gl2_A Interferon-induced heli 31.5 15 0.00053 41.4 1.6 74 529-612 56-142 (699)
459 2ff7_A Alpha-hemolysin translo 31.4 18 0.00061 35.3 1.8 19 303-321 33-51 (247)
460 1wv9_A Rhodanese homolog TT165 31.3 40 0.0014 27.0 3.7 35 530-569 54-88 (94)
461 2pze_A Cystic fibrosis transme 31.0 18 0.00063 34.7 1.8 19 303-321 32-50 (229)
462 2ghi_A Transport protein; mult 30.9 19 0.00063 35.5 1.9 19 303-321 44-62 (260)
463 3m6a_A ATP-dependent protease 30.8 23 0.0008 38.9 2.9 20 304-323 107-126 (543)
464 2grj_A Dephospho-COA kinase; T 30.8 25 0.00086 32.8 2.7 18 307-324 14-31 (192)
465 2pcj_A ABC transporter, lipopr 30.7 18 0.00062 34.6 1.7 18 304-321 29-46 (224)
466 4g1u_C Hemin import ATP-bindin 30.6 18 0.00063 35.7 1.8 19 303-321 35-53 (266)
467 3pxi_A Negative regulator of g 30.6 30 0.001 39.7 3.9 20 305-324 201-220 (758)
468 1rz3_A Hypothetical protein rb 30.4 25 0.00086 32.7 2.7 17 306-322 23-39 (201)
469 2f1r_A Molybdopterin-guanine d 30.2 14 0.00046 34.0 0.7 17 307-323 4-20 (171)
470 1g6h_A High-affinity branched- 30.0 19 0.00066 35.3 1.8 19 303-321 31-49 (257)
471 1ji0_A ABC transporter; ATP bi 29.8 20 0.00067 34.8 1.8 18 304-321 31-48 (240)
472 3iwh_A Rhodanese-like domain p 29.7 35 0.0012 28.2 3.1 36 528-568 55-90 (103)
473 2ce7_A Cell division protein F 29.6 24 0.00082 38.1 2.6 17 306-322 50-66 (476)
474 2r2a_A Uncharacterized protein 29.5 28 0.00095 32.7 2.8 17 307-323 7-23 (199)
475 1mv5_A LMRA, multidrug resista 29.5 17 0.00059 35.2 1.4 18 304-321 27-44 (243)
476 1b0u_A Histidine permease; ABC 29.3 20 0.0007 35.2 1.9 18 304-321 31-48 (262)
477 3lda_A DNA repair protein RAD5 29.3 29 0.001 36.5 3.2 19 305-323 178-196 (400)
478 1htw_A HI0065; nucleotide-bind 29.1 24 0.00083 31.8 2.2 19 303-321 31-49 (158)
479 3qks_A DNA double-strand break 29.0 30 0.001 32.5 2.9 16 307-322 25-40 (203)
480 2zu0_C Probable ATP-dependent 28.9 26 0.00089 34.6 2.6 18 304-321 45-62 (267)
481 2h92_A Cytidylate kinase; ross 28.9 32 0.0011 32.2 3.1 19 305-323 3-21 (219)
482 1odf_A YGR205W, hypothetical 3 28.7 27 0.00093 34.9 2.7 16 307-322 33-48 (290)
483 1ltq_A Polynucleotide kinase; 28.5 27 0.00094 34.6 2.7 17 307-323 4-20 (301)
484 2xau_A PRE-mRNA-splicing facto 28.4 1E+02 0.0035 35.4 7.8 76 345-426 303-393 (773)
485 2d2e_A SUFC protein; ABC-ATPas 28.4 27 0.00091 34.1 2.5 19 303-321 27-45 (250)
486 2yz2_A Putative ABC transporte 28.3 22 0.00075 35.1 1.9 18 304-321 32-49 (266)
487 2ixe_A Antigen peptide transpo 28.3 22 0.00075 35.2 1.9 19 303-321 43-61 (271)
488 3nh6_A ATP-binding cassette SU 28.3 16 0.00054 37.1 0.8 20 303-322 78-97 (306)
489 1vpl_A ABC transporter, ATP-bi 28.3 22 0.00075 34.9 1.9 18 304-321 40-57 (256)
490 1q3t_A Cytidylate kinase; nucl 28.1 31 0.0011 32.9 3.0 20 305-324 16-35 (236)
491 3ake_A Cytidylate kinase; CMP 27.9 30 0.001 31.9 2.7 17 307-323 4-20 (208)
492 2vhj_A Ntpase P4, P4; non- hyd 27.9 24 0.00084 36.0 2.2 23 303-325 121-143 (331)
493 2qi9_C Vitamin B12 import ATP- 27.8 22 0.00076 34.7 1.8 18 304-321 25-42 (249)
494 3flh_A Uncharacterized protein 27.8 40 0.0014 28.7 3.3 36 528-568 70-107 (124)
495 2olj_A Amino acid ABC transpor 27.7 23 0.00078 35.0 1.9 18 304-321 49-66 (263)
496 2nq2_C Hypothetical ABC transp 27.7 22 0.00077 34.8 1.8 18 304-321 30-47 (253)
497 1gtv_A TMK, thymidylate kinase 27.5 16 0.00055 34.1 0.7 16 308-323 3-18 (214)
498 1uj2_A Uridine-cytidine kinase 27.4 30 0.001 33.5 2.7 17 307-323 24-40 (252)
499 3r20_A Cytidylate kinase; stru 27.3 31 0.0011 33.4 2.7 20 305-324 9-28 (233)
500 3cmw_A Protein RECA, recombina 27.2 46 0.0016 41.8 4.8 41 303-355 32-72 (1706)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-56 Score=488.87 Aligned_cols=376 Identities=26% Similarity=0.444 Sum_probs=324.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++||.+|+++|.++|+.+++++|+++++|||||||++|++|+++++..... .....+++
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~----~~~~~~~~ 131 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH----ELELGRPQ 131 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC----CCCTTCCS
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc----ccccCCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999876421 12234779
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++||++|+.|+++++++++.. ..+++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||||
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 999999999999999999998764 4578889999999888888888899999999999999999888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhC--CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSS--PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~--~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
|||++. +.+|...+..++... ++..|++++|||++..+......++.+...+...........+.+.+..+...
T Consensus 211 Eah~~~-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~--- 286 (434)
T 2db3_A 211 EADRML-DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY--- 286 (434)
T ss_dssp THHHHT-STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG---
T ss_pred cHhhhh-ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH---
Confidence 999999 789999999998875 56789999999999999888877777665555444444455666665554322
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.+...+.+++..... ++||||++++.|+.+++.|.+.+ +.+..+||+|++.+|.++++.|++|+.
T Consensus 287 ---------~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~-----~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 287 ---------AKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKE-----FPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp ---------GHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT-----CCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred ---------HHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC-----CCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 477788888887654 49999999999999999999865 789999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeC-ccHHHHHHHHHHhcCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG-KQVSLAQRIMERNRKGHPL 664 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~-~d~~~~~~l~~~~~~~~~~ 664 (675)
+ |||||+++++|||+|++++||+||+|.++++|+||+||+|| .|+.|.|++|+.+ ++..+.+.+.+.+....
T Consensus 352 ~----vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR-~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~-- 424 (434)
T 2db3_A 352 K----VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGR-VGNNGRATSFFDPEKDRAIAADLVKILEGSG-- 424 (434)
T ss_dssp S----EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSC-TTCCEEEEEEECTTTCGGGHHHHHHHHHHTT--
T ss_pred c----EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhccccc-CCCCCEEEEEEeccccHHHHHHHHHHHHHcC--
Confidence 8 99999999999999999999999999999999999999999 7999999999995 46666666666555433
Q ss_pred CCCChhhhcc
Q 005837 665 HDVPSAFELM 674 (675)
Q Consensus 665 ~~l~~~~e~m 674 (675)
+++|.+++.|
T Consensus 425 ~~vp~~l~~~ 434 (434)
T 2db3_A 425 QTVPDFLRTC 434 (434)
T ss_dssp CCCCGGGC--
T ss_pred CCCCHHHHhC
Confidence 7788877654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.4e-53 Score=463.14 Aligned_cols=381 Identities=28% Similarity=0.468 Sum_probs=319.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhh---------cc
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ---------GL 338 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~---------~~ 338 (675)
.+|+++++++.+.+.|..+||..|+++|.++++.++.++|+++++|||+|||++|++|+++.+...... +.
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999988754210 00
Q ss_pred CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccccc
Q 005837 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418 (675)
Q Consensus 339 ~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l 418 (675)
......++++||++|+++|+.|+++.++++... .++++..++|+.....+...+..+++|+|+||++|..++....+.+
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh
Confidence 001123478999999999999999999998763 5678899999998888888888889999999999999998877888
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhC--CC--CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceE
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSS--PV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~--~~--~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~ 494 (675)
..+++|||||||++. +.+|...+..++... +. ..|++++|||++..+...+..++.+...+...........+.+
T Consensus 174 ~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 174 DFCKYLVLDEADRML-DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp TTCCEEEESSHHHHH-HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred hhCcEEEEEChhHhh-ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999999998 677999999998743 22 5799999999999888777777766655544444444455555
Q ss_pred EEEecCCCCCCCCchhhhhhhHHHHHHHHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHH
Q 005837 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR 573 (675)
.+..+... .+...+.+++... ..+++||||+++++++.+++.|.+.+ +.+..+||+|++++|
T Consensus 253 ~~~~~~~~------------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 253 KVVWVEES------------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-----YACTSIHGDRSQRDR 315 (417)
T ss_dssp EEEECCGG------------GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHH
T ss_pred EEEEeccH------------hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-----CCeeEecCCCCHHHH
Confidence 55544322 4677788888776 46789999999999999999998865 789999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHH
Q 005837 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQR 653 (675)
Q Consensus 574 ~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~ 653 (675)
.++++.|++|+.+ |||||+++++|+|+|++++||+|++|.++..|+||+||+|| .|+.|.|++|+.+.+...++.
T Consensus 316 ~~~~~~f~~g~~~----vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~~~~~~~~~ 390 (417)
T 2i4i_A 316 EEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR-VGNLGLATSFFNERNINITKD 390 (417)
T ss_dssp HHHHHHHHHTSSC----EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHH
T ss_pred HHHHHHHHcCCCC----EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcccc-CCCCceEEEEEccccHHHHHH
Confidence 9999999999988 99999999999999999999999999999999999999999 789999999999999999888
Q ss_pred HHHHhcCCCCCCCCChhhhcc
Q 005837 654 IMERNRKGHPLHDVPSAFELM 674 (675)
Q Consensus 654 l~~~~~~~~~~~~l~~~~e~m 674 (675)
+.+...... .++|.+++.|
T Consensus 391 l~~~~~~~~--~~~~~~l~~~ 409 (417)
T 2i4i_A 391 LLDLLVEAK--QEVPSWLENM 409 (417)
T ss_dssp HHHHHHHTT--CCCCHHHHHH
T ss_pred HHHHHHHhc--CcCCHHHHHH
Confidence 888765543 5677766544
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.7e-53 Score=460.16 Aligned_cols=368 Identities=25% Similarity=0.448 Sum_probs=322.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 107 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---------VRETQ 107 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---------SCSCC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999776321 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.+.+++.. .++.+..+.|+.........+..+++|+|+||++|.+++.+....+..+++||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 999999999999999999998764 5678889999998888877777889999999999999998877888999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||++. +.+|...+..++..++...|++++|||++..+...+..++.++..+...........+.+.+..+....
T Consensus 187 Eah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 261 (410)
T 2j0s_A 187 EADEML-NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE---- 261 (410)
T ss_dssp THHHHT-STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT----
T ss_pred cHHHHH-hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH----
Confidence 999998 678999999999999889999999999999887766666666655554444444455666665544321
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
.+...+..++.....+++||||+++++++.+++.|.+.+ +.+..+||+|++.+|.++++.|++|+.+
T Consensus 262 -------~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~- 328 (410)
T 2j0s_A 262 -------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN-----FTVSSMHGDMPQKERESIMKEFRSGASR- 328 (410)
T ss_dssp -------HHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHHTSSC-
T ss_pred -------hHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC-----CceEEeeCCCCHHHHHHHHHHHHCCCCC-
Confidence 367778888887777899999999999999999999865 7889999999999999999999999988
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|||||+++++|+|+|++++||+|++|.+...|+||+||+|| .|+.|.|++|+...+...++.+....... ++++
T Consensus 329 ---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 402 (410)
T 2j0s_A 329 ---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR-YGRKGVAINFVKNDDIRILRDIEQYYSTQ--IDEM 402 (410)
T ss_dssp ---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSG-GGCCEEEEEEEEGGGHHHHHHHHHHTTCC--CEEC
T ss_pred ---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccC-CCCceEEEEEecHHHHHHHHHHHHHhCCC--ceec
Confidence 99999999999999999999999999999999999999999 78999999999999999999998877654 4666
Q ss_pred Ch
Q 005837 668 PS 669 (675)
Q Consensus 668 ~~ 669 (675)
|.
T Consensus 403 ~~ 404 (410)
T 2j0s_A 403 PM 404 (410)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.2e-52 Score=452.81 Aligned_cols=372 Identities=24% Similarity=0.416 Sum_probs=310.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 110 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---------LKATQ 110 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------SCSCC
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------CCcee
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+||++|+++|+.|+.+.+++++.. .+..+..+.|+.........+. ..++|+|+||++|.+.+....+.+..+++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 999999999999999999998764 4677888888888777766655 67899999999999999888888889999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||||++. +.++...+..++..++...|++++|||++..+......++.+...+...........+.+.+.......
T Consensus 190 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 265 (414)
T 3eiq_A 190 DEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE--- 265 (414)
T ss_dssp CSHHHHH-HTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST---
T ss_pred ECHHHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH---
Confidence 9999998 678889999999999999999999999999988888777777666665555555556666666554432
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
.+...+..++.....+++||||+++++++.+++.|.+.+ +.+..+||+|++.+|.++++.|++|..+
T Consensus 266 --------~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 332 (414)
T 3eiq_A 266 --------WKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD-----FTVSAMHGDMDQKERDVIMREFRSGSSR 332 (414)
T ss_dssp --------THHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT-----CCCEEC---CHHHHHHHHHHHHSCC---
T ss_pred --------hHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC-----CeEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 377888888888888899999999999999999998765 7889999999999999999999999988
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~ 666 (675)
|||||+++++|+|+|++++||++++|.+..+|+||+||+|| .|+.|.|++|+...+...++.+.+..... +++
T Consensus 333 ----vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 405 (414)
T 3eiq_A 333 ----VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR-FGRKGVAINMVTEEDKRTLRDIETFYNTS--IEE 405 (414)
T ss_dssp ----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCC--CEE
T ss_pred ----EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccC-CCCCceEEEEEcHHHHHHHHHHHHHHcCC--ccc
Confidence 99999999999999999999999999999999999999999 78999999999999999999998877644 466
Q ss_pred CChhhhc
Q 005837 667 VPSAFEL 673 (675)
Q Consensus 667 l~~~~e~ 673 (675)
+|.+.+.
T Consensus 406 ~~~~~~~ 412 (414)
T 3eiq_A 406 MPLNVAD 412 (414)
T ss_dssp CCC----
T ss_pred cChhhhh
Confidence 7765543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.9e-51 Score=444.00 Aligned_cols=366 Identities=26% Similarity=0.438 Sum_probs=317.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+.|.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 91 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---------LNKIQ 91 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---------cCCcc
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++... .++.+..+.|+.........+...++|+|+||++|..++......+.++++||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 999999999999999999998764 4678888999988887777777889999999999999888877788999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||++. +.++...+..++..++...|++++|||++..+...+...+.....+.... ......+.+++.....
T Consensus 171 EaH~~~-~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------ 242 (400)
T 1s2m_A 171 EADKML-SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE------ 242 (400)
T ss_dssp SHHHHS-SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG------
T ss_pred CchHhh-hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech------
Confidence 999998 67888899999998888999999999999998888887776554433222 1222344444443322
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..++.....+++||||+++++++.+++.|++.+ +.+..+||+|++.+|..+++.|++|+.+
T Consensus 243 ------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~- 310 (400)
T 1s2m_A 243 ------RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKVR- 310 (400)
T ss_dssp ------GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHTTSSS-
T ss_pred ------hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC-----CCeEEecCCCCHHHHHHHHHHHhcCCCc-
Confidence 1467778888888888899999999999999999999875 7889999999999999999999999988
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|||||+++++|+|+|++++||++++|.+...|+||+||+|| .|+.|.|++|+.+.+...++++.+.... +++.+
T Consensus 311 ---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR-~g~~g~~~~l~~~~~~~~~~~i~~~~~~--~~~~~ 384 (400)
T 1s2m_A 311 ---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR-FGHLGLAINLINWNDRFNLYKIEQELGT--EIAAI 384 (400)
T ss_dssp ---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSC-TTCCEEEEEEECGGGHHHHHHHHHHHTC--CCEEC
T ss_pred ---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcC-CCCCceEEEEeccchHHHHHHHHHHhCC--Ccccc
Confidence 99999999999999999999999999999999999999999 7899999999999999999999887754 34555
Q ss_pred Ch
Q 005837 668 PS 669 (675)
Q Consensus 668 ~~ 669 (675)
|.
T Consensus 385 ~~ 386 (400)
T 1s2m_A 385 PA 386 (400)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.1e-51 Score=447.28 Aligned_cols=370 Identities=26% Similarity=0.385 Sum_probs=316.5
Q ss_pred CCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhc
Q 005837 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337 (675)
Q Consensus 260 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~ 337 (675)
++.+..+..+|+++++++.+++.+.++|+..|+++|.++++.++++ +++++++|||+|||++|++|+++.+...
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---- 92 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---- 92 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc----
Confidence 3445566689999999999999999999999999999999999987 9999999999999999999999876432
Q ss_pred cCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-ccc
Q 005837 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GIL 416 (675)
Q Consensus 338 ~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~ 416 (675)
..++++||++|+++|+.|+.+.++++......+.+....++...... .....+|+|+||++|..++.+ ..+
T Consensus 93 -----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 93 -----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 164 (412)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSS
T ss_pred -----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCc
Confidence 34568999999999999999999998876556778888877654432 234579999999999988865 556
Q ss_pred ccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEE
Q 005837 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (675)
Q Consensus 417 ~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~ 496 (675)
.+.++++|||||||++....++...+..++..++...|++++|||++..+.......+.+...+...........+.+.+
T Consensus 165 ~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEE
T ss_pred ChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEE
Confidence 77899999999999998557888889999999998999999999999999888888888777766655555555666665
Q ss_pred EecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHH
Q 005837 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v 576 (675)
...... ..+...+..++.....+++||||+++++++.+++.|.+.+ +.+..+||+|++.+|.++
T Consensus 245 ~~~~~~-----------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~ 308 (412)
T 3fht_A 245 VLCSSR-----------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG-----HQVALLSGEMMVEQRAAV 308 (412)
T ss_dssp EECSSH-----------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHH
T ss_pred EEcCCh-----------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-----CeEEEecCCCCHHHHHHH
Confidence 554332 1477778888887778899999999999999999999875 788999999999999999
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCC------CCHHHHHHHhcccccCCCCccEEEEEEeCcc-HH
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP------RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VS 649 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~ 649 (675)
++.|++|+.+ |||||+++++|+|+|++++||+|++| .+..+|+||+||+|| .|..|.|++|+.+.+ ..
T Consensus 309 ~~~f~~g~~~----vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~~~~~~ 383 (412)
T 3fht_A 309 IERFREGKEK----VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR-FGKRGLAVNMVDSKHSMN 383 (412)
T ss_dssp HHHHHTTSCS----EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSC-TTCCEEEEEEECSHHHHH
T ss_pred HHHHHCCCCc----EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccC-CCCCceEEEEEcChhhHH
Confidence 9999999988 99999999999999999999999999 578999999999999 789999999998765 77
Q ss_pred HHHHHHHHhcCCC
Q 005837 650 LAQRIMERNRKGH 662 (675)
Q Consensus 650 ~~~~l~~~~~~~~ 662 (675)
+++.+.+......
T Consensus 384 ~~~~i~~~~~~~~ 396 (412)
T 3fht_A 384 ILNRIQEHFNKKI 396 (412)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcc
Confidence 7888877766544
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-50 Score=439.65 Aligned_cols=371 Identities=24% Similarity=0.428 Sum_probs=314.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+.|.++||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC---------TTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc---------CCCee
Confidence 579999999999999999999999999999999999999999999999999999999999776321 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+||++|+++|+.|+.+.++++.....++++..+.|+.........+.. .++|+|+||++|..++......+.++++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 999999999999999999998765446889999999887766555543 4799999999999998887778899999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCcc-ccCCCceEEEEecCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~~ 505 (675)
||||++....++...+..++...+...|++++|||++..+...+...+..+..+...... .....+.+.+......
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN--- 235 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG---
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch---
Confidence 999999855688889999999888899999999999998888887777766555443322 2223444544443321
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
.+...+..++.....+++||||+++++++.+++.|.+.+ +.+..+||+|++.+|.++++.|++|+.
T Consensus 236 ---------~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~ 301 (391)
T 1xti_A 236 ---------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN-----FPAIAIHRGMPQEERLSRYQQFKDFQR 301 (391)
T ss_dssp ---------GHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTCC
T ss_pred ---------hHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC-----CcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 467778888888888999999999999999999999865 788999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCcc-HHHHHHHHHHhcCCCCC
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VSLAQRIMERNRKGHPL 664 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~~~~~l~~~~~~~~~~ 664 (675)
+ |||||+++++|+|+|++++||++++|++...|+||+||+|| .|+.|.|++|+.+.+ ..+++.+.+... ..+
T Consensus 302 ~----vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~ 374 (391)
T 1xti_A 302 R----ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVSDENDAKILNDVQDRFE--VNI 374 (391)
T ss_dssp S----EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSS-SCCCCEEEEEECSHHHHHHHHHHHHHTT--CCC
T ss_pred c----EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccC-CCCceEEEEEEcccchHHHHHHHHHHhc--CCh
Confidence 8 99999999999999999999999999999999999999999 789999999998764 456677766543 445
Q ss_pred CCCChhh
Q 005837 665 HDVPSAF 671 (675)
Q Consensus 665 ~~l~~~~ 671 (675)
.++|..+
T Consensus 375 ~~~~~~~ 381 (391)
T 1xti_A 375 SELPDEI 381 (391)
T ss_dssp EECCSCC
T ss_pred hhCCccc
Confidence 6666543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-50 Score=438.02 Aligned_cols=365 Identities=27% Similarity=0.442 Sum_probs=307.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~ 345 (675)
.+|+++++++.+++.+.++|+..|+++|.++++.++++ +++++++|||+|||++|++|++..+... ..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------DAS 75 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---------CCS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---------CCC
Confidence 58999999999999999999999999999999999998 9999999999999999999999876432 346
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEE
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IV 425 (675)
+++||++|+++|+.|+.+.+++++.. ..+.+....++...... ..+++|+|+||++|...+.+....+.++++||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcc-cCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 68999999999999999999998764 45667777766543322 33689999999999999988778899999999
Q ss_pred EcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 426 IDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
|||||++....++...+..+....+...|++++|||++..+.......+.....+...........+.+.+......
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE--- 227 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---
Confidence 99999998557899999999999988999999999999998888888877766665554444445555555544322
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCC
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~ 585 (675)
..+...+..++.....+++||||+++++++.+++.|++.+ +.+..+||+|++.+|.++++.|++|+.
T Consensus 228 --------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~ 294 (395)
T 3pey_A 228 --------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-----HEVSILHGDLQTQERDRLIDDFREGRS 294 (395)
T ss_dssp --------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred --------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-----CcEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 2466777777777778899999999999999999999865 788999999999999999999999998
Q ss_pred CCCceEEEEcccccccCCCCCcCEEEEcCCCC------CHHHHHHHhcccccCCCCccEEEEEEeCccH-HHHHHHHHHh
Q 005837 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPR------DPSEYVRRVGRTARGAGGTGKAFIFVVGKQV-SLAQRIMERN 658 (675)
Q Consensus 586 ~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~------s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~-~~~~~l~~~~ 658 (675)
+ |||||+++++|+|+|++++||+|++|+ +...|+||+||+|| .|..|.|++|+...+. ..++.+.+..
T Consensus 295 ~----vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR-~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 295 K----VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGR-FGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp C----EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSC-TTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred C----EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcccccc-CCCCceEEEEEechHHHHHHHHHHHHh
Confidence 8 999999999999999999999999999 99999999999999 7899999999987554 4455554443
Q ss_pred cCCCCCCCCC
Q 005837 659 RKGHPLHDVP 668 (675)
Q Consensus 659 ~~~~~~~~l~ 668 (675)
. ...+..+|
T Consensus 370 ~-~~~~~~~~ 378 (395)
T 3pey_A 370 G-DIEMTRVP 378 (395)
T ss_dssp T-SCCCEECC
T ss_pred C-CceeecCC
Confidence 3 33344444
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.3e-52 Score=463.26 Aligned_cols=367 Identities=26% Similarity=0.391 Sum_probs=179.6
Q ss_pred CCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhcc
Q 005837 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338 (675)
Q Consensus 261 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~ 338 (675)
+.++.+..+|++++|++.+++.|.++||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+...
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----- 159 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----- 159 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----
Confidence 344556679999999999999999999999999999999999987 9999999999999999999999776432
Q ss_pred CCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccc
Q 005837 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQ 417 (675)
Q Consensus 339 ~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~ 417 (675)
..++++|||+|+++|+.|+.+.++++......+.+....++...... .....+|+|+||++|.+++.+ ..+.
T Consensus 160 ----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~ 232 (479)
T 3fmp_B 160 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFID 232 (479)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCC
T ss_pred ----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcC
Confidence 34568999999999999999999998876556777777777654332 133578999999999988865 4567
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEE
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~ 497 (675)
+.++++|||||||++....++...+..+...++...|++++|||++..+.......++++..+...........+.+.++
T Consensus 233 ~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp GGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------
T ss_pred cccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEE
Confidence 78999999999999985578889999999999999999999999999999888888877666655444333344444443
Q ss_pred ecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHH
Q 005837 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577 (675)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~ 577 (675)
.+... ..+...+..++......++||||+++..|+.++..|...+ +.+..+||+|++.+|..++
T Consensus 313 ~~~~~-----------~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~-----~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 313 LCSSR-----------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG-----HQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCH-----------HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC-----ccEEEecCCCCHHHHHHHH
Confidence 33221 1355667777776677899999999999999999998765 7889999999999999999
Q ss_pred HHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCC------CCHHHHHHHhcccccCCCCccEEEEEEeCcc-HHH
Q 005837 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP------RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ-VSL 650 (675)
Q Consensus 578 ~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d-~~~ 650 (675)
+.|++|+.+ |||||+++++|||+|++++||+||+| .+...|+||+||||| .|..|.|++|+.+.+ ..+
T Consensus 377 ~~f~~g~~~----iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR-~g~~G~~i~~~~~~~~~~~ 451 (479)
T 3fmp_B 377 ERFREGKEK----VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR-FGKRGLAVNMVDSKHSMNI 451 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCCc----EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhccccc-CCCCceEEEEEcCcchHHH
Confidence 999999988 99999999999999999999999999 467899999999999 789999999998765 666
Q ss_pred HHHHHHHhcC
Q 005837 651 AQRIMERNRK 660 (675)
Q Consensus 651 ~~~l~~~~~~ 660 (675)
++.+.+....
T Consensus 452 ~~~i~~~~~~ 461 (479)
T 3fmp_B 452 LNRIQEHFNK 461 (479)
T ss_dssp ----------
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7e-49 Score=421.36 Aligned_cols=355 Identities=26% Similarity=0.457 Sum_probs=307.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
.+|+++++++.+.+.|.++|+..|+++|.++++.++++ +++++++|||+|||++|++|++..+.. ..++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCCC
Confidence 47999999999999999999999999999999999988 799999999999999999999876533 2366
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++||++|+++|+.|+.+.+.++... ..+.+..+.|+.........+. .++|+|+||++|.+.+......+.++++||+
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 8999999999999999999998764 4577888899888766655554 6899999999999999887778899999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||||++. +.++...+..++...+...+++++|||++......+..++.+...+.... ...+.+.+.....
T Consensus 154 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----- 223 (367)
T 1hv8_A 154 DEADEML-NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE----- 223 (367)
T ss_dssp ETHHHHH-TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG-----
T ss_pred eCchHhh-hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh-----
Confidence 9999998 67888899999998888999999999999998888877776654443322 1234444443322
Q ss_pred CchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCC
Q 005837 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586 (675)
Q Consensus 507 ~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~ 586 (675)
..+...+..++. ....++||||+++++++.+++.|++.+ +.+..+||+|+..+|.++++.|++|+.+
T Consensus 224 -------~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 224 -------NERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIG-----FKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp -------GGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred -------HHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcC-----CCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 146666777665 456789999999999999999999865 7889999999999999999999999888
Q ss_pred CCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCC
Q 005837 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662 (675)
Q Consensus 587 ~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~ 662 (675)
|||||+++++|+|+|++++||++++|.++.+|+||+||+|| .|++|.|++++.+.+...++.+.+......
T Consensus 291 ----vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R-~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 291 ----ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR-AGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp ----EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCC-SSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred ----EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccccc-CCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999 789999999999999999999988877554
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.8e-49 Score=449.53 Aligned_cols=366 Identities=22% Similarity=0.398 Sum_probs=292.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhhhh--cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~il--~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
+++.+++.+..+||..|+++|.++++.++ .++|++++||||+|||++|++|+++.+...... ...++++|||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-----~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-----SQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-----STTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-----ccCCeeEEEEc
Confidence 99999999999999999999999999999 678999999999999999999999999775321 23356899999
Q ss_pred CcHHHHHHHHHHHHHhhcCC---CCceEEEEECCcchHHHHHHh-hCCCcEEEeCHHHHHHHHHhc-ccccccceEEEEc
Q 005837 353 PTAELASQVLSNCRSLSKCG---VPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILD 427 (675)
Q Consensus 353 Ptr~La~Q~~~~l~~l~~~~---~~~~v~~l~gg~~~~~~~~~l-~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~IVID 427 (675)
|+++|+.|+++.++++.... ..+.+..+.|+......+..+ ..+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 99999999999999975421 235678888988877776655 447999999999999888763 3457889999999
Q ss_pred CcccccCCccHHHHHHHHHhhC-------CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCc----cccCCCceEEE
Q 005837 428 EVDILFNDEDFEVALQSLISSS-------PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM----HRISPGLEEFL 496 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~-------~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~----~~~~~~i~~~~ 496 (675)
|||++. +.+|...+..++..+ ....|++++|||++..+...+...+.....+..... ......+.+..
T Consensus 234 Eah~l~-~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 234 EADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp THHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred CHHHHh-ccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 999999 678888888876553 347799999999999887766666654433322111 11122233333
Q ss_pred EecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHH
Q 005837 497 VDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~ 575 (675)
....... .........+...+.. ..+.++||||++++.|+.++..|.+.... ++.+..+||+|++.+|..
T Consensus 313 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~ 383 (563)
T 3i5x_A 313 VISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTS 383 (563)
T ss_dssp EEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHH
T ss_pred EECchhH-------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHH
Confidence 3222110 1111223334444433 55789999999999999999999986432 278999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHH
Q 005837 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 576 v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
+++.|++|+.+ |||||+++++|||+|++++||+|++|.++.+|+||+||||| .|..|.|++|+.+.+..+++.|.
T Consensus 384 ~~~~f~~g~~~----vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 384 LVKRFKKDESG----ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR-SGKEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp HHHHHHHCSSE----EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSC-TTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHhcCCCC----EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCcccc-CCCCceEEEEEchhHHHHHHHHH
Confidence 99999999888 99999999999999999999999999999999999999999 78999999999999999999998
Q ss_pred HHhcC
Q 005837 656 ERNRK 660 (675)
Q Consensus 656 ~~~~~ 660 (675)
+....
T Consensus 459 ~~~~~ 463 (563)
T 3i5x_A 459 DAKNI 463 (563)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 76543
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.7e-49 Score=448.39 Aligned_cols=367 Identities=22% Similarity=0.385 Sum_probs=294.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhhhh--cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~il--~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~ 352 (675)
+++.+++.+..+||..|+++|.++++.++ .+++++++||||+|||++|++|+++.+..... ....++++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999999877532 123467899999
Q ss_pred CcHHHHHHHHHHHHHhhcC---CCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhc-ccccccceEEEEc
Q 005837 353 PTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG-ILQLINLRCAILD 427 (675)
Q Consensus 353 Ptr~La~Q~~~~l~~l~~~---~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~IVID 427 (675)
||++|+.|+.+.++++... ...+.+..+.|+.........+. .+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 9999999999999997532 13456888889888777766654 47999999999999888763 4467889999999
Q ss_pred CcccccCCccHHHHHHHHHhhC-------CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCC----ccccCCCceEEE
Q 005837 428 EVDILFNDEDFEVALQSLISSS-------PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----MHRISPGLEEFL 496 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~-------~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~----~~~~~~~i~~~~ 496 (675)
|||++. +.+|...+..++..+ ....|++++|||++..+...+...+.....+.... .......+.+..
T Consensus 183 Eah~l~-~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 183 EADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp THHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred ChHHhh-cCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999 678999888886554 23679999999999988777666665543332211 111222333333
Q ss_pred EecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHH
Q 005837 497 VDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~ 575 (675)
....... .........+...+.. ....++||||+++..|+.++..|++.... ++.+..+||+|++.+|.+
T Consensus 262 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 262 VISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTS 332 (579)
T ss_dssp EEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHH
T ss_pred EEecchh-------hhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHH
Confidence 3222111 1111233344444443 55789999999999999999999886422 278999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHH
Q 005837 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 576 v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
+++.|++|+.+ |||||+++++|||+|++++||+|++|.++..|+||+||||| .|+.|.|++|+.+.+..+++.+.
T Consensus 333 ~~~~F~~g~~~----vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR-~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 333 LVKRFKKDESG----ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTAR-SGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp HHHHHHHCSSE----EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSC-TTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHhhcCCCe----EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcccccc-CCCCceEEEEEcccHHHHHHHHH
Confidence 99999999888 99999999999999999999999999999999999999999 79999999999999999999998
Q ss_pred HHhcCC
Q 005837 656 ERNRKG 661 (675)
Q Consensus 656 ~~~~~~ 661 (675)
+.....
T Consensus 408 ~~~~~~ 413 (579)
T 3sqw_A 408 DAKNIV 413 (579)
T ss_dssp HHHCCC
T ss_pred HHhCCC
Confidence 865433
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.1e-51 Score=441.29 Aligned_cols=367 Identities=25% Similarity=0.433 Sum_probs=177.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+.+..+|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 91 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 91 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---------CCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999876432 34679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.+.++... .++.+..+.|+.........+. .++|+|+||++|...+......+.++++||+|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 999999999999999999998753 4678888999887766554444 58999999999999988877788899999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||++. +.++...+..++..+++..|++++|||++..+......++..+..+...........+.+.+..+...
T Consensus 170 Eah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 243 (394)
T 1fuu_A 170 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE----- 243 (394)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred ChHHhh-CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch-----
Confidence 999998 56788889999999988999999999999988887777776655444333222222333333222211
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..++.....+++||||+++++++.+++.|++.+ +.+..+||+|++.+|.++++.|++|+.+
T Consensus 244 ------~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~- 311 (394)
T 1fuu_A 244 ------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK-----FTVSAIYSDLPQQERDTIMKEFRSGSSR- 311 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----CeEEEeeCCCCHHHHHHHHHHHHCCCCc-
Confidence 1245556666666667899999999999999999998764 7889999999999999999999999888
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l 667 (675)
|||||+++++|+|+|++++||++++|.++..|+||+||+|| .|+.|.|++|+.+++...++.+.+..... ++.+
T Consensus 312 ---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 385 (394)
T 1fuu_A 312 ---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR-FGRKGVAINFVTNEDVGAMRELEKFYSTQ--IEEL 385 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccC-CCCCceEEEEEchhHHHHHHHHHHHhCCc--cccc
Confidence 99999999999999999999999999999999999999999 78999999999999988888887765543 3555
Q ss_pred Ch
Q 005837 668 PS 669 (675)
Q Consensus 668 ~~ 669 (675)
|.
T Consensus 386 ~~ 387 (394)
T 1fuu_A 386 PS 387 (394)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-48 Score=441.92 Aligned_cols=345 Identities=15% Similarity=0.231 Sum_probs=277.4
Q ss_pred ccccCCCHHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 270 FKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 270 f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+.++++++.+.+.|++ +||..|+++|.++|+.+++++|+++++|||+|||+||++|++. ..+++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---------------~~g~~ 87 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------------SDGFT 87 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---------------SSSEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---------------cCCcE
Confidence 4567889999999998 6999999999999999999999999999999999999999983 24599
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---H---hhCCCcEEEeCHHHHH---HHHH--hcccc
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---N---LQEGVDVLIATPGRFM---FLIK--EGILQ 417 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~---l~~~~~IlV~Tp~~L~---~~l~--~~~~~ 417 (675)
|||+|+++|+.|+++.+.++ ++.+..+.|+........ . .....+|+|+||++|. .++. .....
T Consensus 88 lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 88 LVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp EEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 99999999999999999987 355777888776554432 2 2457899999999884 2222 12445
Q ss_pred cccceEEEEcCcccccC-CccHHHHHHH--HHhhCCCCccEEEEecCCCHHHHHHHHHhCCCC-eEEeCCCccccCCCce
Q 005837 418 LINLRCAILDEVDILFN-DEDFEVALQS--LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLE 493 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~-~~~~~~~l~~--il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~-~~i~~~~~~~~~~~i~ 493 (675)
+..+++|||||||++.+ +++|++.+.. ++....+..|++++|||++..+...+...+... ...+...+.+ +++.
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r--~nl~ 240 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNR--PNLY 240 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCC--TTEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCC--cccE
Confidence 77899999999999985 3557777655 344445679999999999999888888776432 2222222222 3333
Q ss_pred EEEEecCCCCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHH
Q 005837 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572 (675)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~e 572 (675)
..+...... ...+...+.+++.. ..+.++||||+++++++.++..|...+ +.+..|||+|++.+
T Consensus 241 ~~v~~~~~~----------~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g-----~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 241 YEVRQKPSN----------TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG-----IHAGAYHANLEPED 305 (591)
T ss_dssp EEEEECCSS----------HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHH
T ss_pred EEEEeCCCc----------HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-----CCEEEecCCCCHHH
Confidence 333322110 11355666777754 367899999999999999999999865 78999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHH
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQ 652 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~ 652 (675)
|.++++.|++|+.+ |||||+++++|||+|+|++||||++|+|++.|+||+||||| .|.+|.|++||.+.|...++
T Consensus 306 R~~~~~~F~~g~~~----VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR-~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 306 KTTVHRKWSANEIQ----VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR-DDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp HHHHHHHHHTTSSS----EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCT-TSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCCe----EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCc-CCCCceEEEEEChHHHHHHH
Confidence 99999999999988 99999999999999999999999999999999999999999 79999999999998887776
Q ss_pred HHHH
Q 005837 653 RIME 656 (675)
Q Consensus 653 ~l~~ 656 (675)
.++.
T Consensus 381 ~~~~ 384 (591)
T 2v1x_A 381 SMVV 384 (591)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6653
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.5e-48 Score=434.73 Aligned_cols=342 Identities=20% Similarity=0.308 Sum_probs=279.7
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
..|+++++++.+.+.|++ +|+..|+++|.++++.+++++|+++++|||+|||+||++|++.. .+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~g 66 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------NG 66 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------SS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------CC
Confidence 368999999999999998 89999999999999999999999999999999999999998831 35
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH----HhhCCCcEEEeCHHHHHHHHHhcccccccce
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE----NLQEGVDVLIATPGRFMFLIKEGILQLINLR 422 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~----~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~ 422 (675)
.+|||+|+++|+.|+.+.+.+++ +.+..+.++........ ......+|+|+||++|........+...+++
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CEEEECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 89999999999999999998863 45677777766544322 2235689999999999633222234457899
Q ss_pred EEEEcCcccccC-CccHHHHHHHH---HhhCCCCccEEEEecCCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceEEE
Q 005837 423 CAILDEVDILFN-DEDFEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFL 496 (675)
Q Consensus 423 ~IVIDEaH~l~~-~~~~~~~l~~i---l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~ 496 (675)
+|||||||++.+ +++|+..+..+ .... +..+++++|||++..+...+...+. ++... .....+ +++...+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r--~~l~~~v 217 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDR--PNIRYML 217 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCCC--TTEEEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCCC--CceEEEE
Confidence 999999999985 45677776654 3334 4789999999999988877766553 33332 222222 3343333
Q ss_pred EecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHH
Q 005837 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576 (675)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v 576 (675)
... ..+...+.+++....+.++||||+++++++.+++.|++.+ +.+..|||+|++++|.++
T Consensus 218 ~~~--------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g-----~~~~~~h~~l~~~~R~~~ 278 (523)
T 1oyw_A 218 MEK--------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG-----ISAAAYHAGLENNVRADV 278 (523)
T ss_dssp EEC--------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHH
T ss_pred EeC--------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC-----CCEEEecCCCCHHHHHHH
Confidence 321 1356678888888788899999999999999999999865 789999999999999999
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHH
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
++.|++|+.+ |||||+++++|||+|++++||||++|+|++.|+||+||||| .|.+|.|++|+.+.|....+.++.
T Consensus 279 ~~~f~~g~~~----vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR-~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 279 QEKFQRDDLQ----IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR-DGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp HHHHHTTSCS----EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT-TSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHcCCCe----EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC-CCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999988 99999999999999999999999999999999999999999 799999999999999888777765
Q ss_pred H
Q 005837 657 R 657 (675)
Q Consensus 657 ~ 657 (675)
.
T Consensus 354 ~ 354 (523)
T 1oyw_A 354 E 354 (523)
T ss_dssp T
T ss_pred c
Confidence 4
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-47 Score=404.79 Aligned_cols=335 Identities=25% Similarity=0.465 Sum_probs=282.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 275 l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
|++++.+.++++|+..|+++|.++++.+++++++++++|||+|||++|++|+++. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5688999999999999999999999999999999999999999999999998752 4489999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 355 r~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
++|+.|+.+.++++... .+..+..+.|+.........+. .++|+|+||++|.+.+......+.++++||+||||++.
T Consensus 66 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~- 142 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF- 142 (337)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-
T ss_pred HHHHHHHHHHHHHHhhh-cCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-
Confidence 99999999999998753 4577888899887776655554 48999999999999988877778899999999999998
Q ss_pred CccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhh
Q 005837 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514 (675)
Q Consensus 435 ~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 514 (675)
+.++...+..++...+...+++++|||++..+...+..++.+...+... .....+.+.+.......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------- 208 (337)
T 2z0m_A 143 EMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW----------- 208 (337)
T ss_dssp HTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-----------
T ss_pred ccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-----------
Confidence 6778888999999998889999999999999888888887665544322 12233444444443221
Q ss_pred hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE
Q 005837 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC 594 (675)
Q Consensus 515 ~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa 594 (675)
......+....++++||||+++++++.+++.|. .+..+||+|+..+|.++++.|++|+.+ ||||
T Consensus 209 ---~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~----vlv~ 272 (337)
T 2z0m_A 209 ---RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYD----MLIT 272 (337)
T ss_dssp ---HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCS----EEEE
T ss_pred ---HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCc----EEEE
Confidence 122355566778899999999999999988775 367899999999999999999999988 9999
Q ss_pred cccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhc
Q 005837 595 TDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659 (675)
Q Consensus 595 T~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~ 659 (675)
|+++++|+|+|++++||++++|.|+..|+||+||+|| .|+.|.|++|+. .+....+.+.+...
T Consensus 273 T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR-~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 273 TDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR-MGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCG-GGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCccccCCCccCCCEEEEecCCCCHHHhhHhcCcccc-CCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 789999999999 88888888766543
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-47 Score=424.58 Aligned_cols=363 Identities=25% Similarity=0.379 Sum_probs=252.4
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 270 f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||+|||++|++++++.+... ..+++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~---------~~~~~ 191 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS---------VPKPQ 191 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---------CCSCC
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---------CCCce
Confidence 455667888899999999999999999999999998 9999999999999999999999877442 34568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+++++++.. ..+.+....++..... ....++|+|+||++|...+....+.+.++++||||
T Consensus 192 vLvl~P~~~L~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 192 AICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp EEEECSCHHHHHHHHHHHHHHSTT-SSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEC
T ss_pred EEEEECcHHHHHHHHHHHHHhCCc-cCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEe
Confidence 999999999999999999998753 3344444444433222 23368999999999999988877788999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|||++....++...+..++..++...|++++|||++..+......++.....+...........+..........
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 341 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE----- 341 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C-----
T ss_pred chhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch-----
Confidence 999998557888999999999998999999999999888877777777666555444433334444444433222
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
..+...+..++.....+++||||+++++++.+++.|.+.+ +.+..+||+|++.+|..+++.|++|+.+
T Consensus 342 ------~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~-----~~v~~~hg~~~~~~R~~il~~f~~g~~~- 409 (508)
T 3fho_A 342 ------EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG-----HTVACLTGNLEGAQRDAIMDSFRVGTSK- 409 (508)
T ss_dssp ------HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT-----CCCCEEC-----CTTGGGTHHHHSSSCC-
T ss_pred ------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC-----CcEEEEeCCCCHHHHHHHHHHHHCCCCe-
Confidence 1466677777777778899999999999999999998754 7788999999999999999999999988
Q ss_pred CceEEEEcccccccCCCCCcCEEEEcCCC------CCHHHHHHHhcccccCCCCccEEEEEEeC-ccHHHHHHHHHHhcC
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFP------RDPSEYVRRVGRTARGAGGTGKAFIFVVG-KQVSLAQRIMERNRK 660 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~~~~~-~d~~~~~~l~~~~~~ 660 (675)
|||||+++++|+|+|++++||++++| .++..|+||+||+|| .|..|.|++|+.. .+...++.+.+....
T Consensus 410 ---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR-~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 410 ---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR-FGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp ---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred ---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCC-CCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999 789999999999999 7899999999984 556666777665543
Q ss_pred CCCCCCCCh
Q 005837 661 GHPLHDVPS 669 (675)
Q Consensus 661 ~~~~~~l~~ 669 (675)
. +..++.
T Consensus 486 ~--i~~l~~ 492 (508)
T 3fho_A 486 P--ITRVPT 492 (508)
T ss_dssp C--CC----
T ss_pred C--cccCCC
Confidence 3 344443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.9e-45 Score=398.60 Aligned_cols=327 Identities=17% Similarity=0.248 Sum_probs=255.3
Q ss_pred HHHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH
Q 005837 279 MIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (675)
Q Consensus 279 l~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L 357 (675)
+.+.+++ +++ +|+++|.++++.+++++|+++++|||+|||++|+++++..+ ..++++||++|+++|
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHHH
Confidence 4455555 355 79999999999999999999999999999999999988765 236699999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEECCcch---HHHHHHhhCC-CcEEEeCHHHHHHHHHhcccccccceEEEEcCccccc
Q 005837 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (675)
Q Consensus 358 a~Q~~~~l~~l~~~~~~~~v~~l~gg~~~---~~~~~~l~~~-~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~ 433 (675)
+.|+++.+++++. .++++..++|+... ..++..+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++.
T Consensus 77 ~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 77 VKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 9999999999876 56889999999887 4455566555 99999999999877764 567789999999999875
Q ss_pred C---------C-ccHHHH-HHHHHhhCC-----------CCccEEEEecC-CCHHHHHHHHHhCCCCeEEeCCCccccCC
Q 005837 434 N---------D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRISP 490 (675)
Q Consensus 434 ~---------~-~~~~~~-l~~il~~~~-----------~~~qiI~lSAT-~~~~v~~~l~~~~~~~~~i~~~~~~~~~~ 490 (675)
. + .+|... +..++..++ ...|++++||| .+..+...+...+.. +..........
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 229 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVSVAR 229 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS---CCSSCCCCCCC
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc---cCcCccccccc
Confidence 2 1 556666 777777655 78899999999 554433222222111 11111222233
Q ss_pred CceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEE-EecCCCC
Q 005837 491 GLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL-PFHAALD 569 (675)
Q Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~-~lhg~m~ 569 (675)
.+.+.+... .+...+..++.. .++++||||+++++|+.++..|+..+ +.+. .+||.
T Consensus 230 ~i~~~~~~~---------------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~h~~-- 286 (414)
T 3oiy_A 230 NITHVRISS---------------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFK-----FNVGETWSEF-- 286 (414)
T ss_dssp SEEEEEESS---------------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTT-----CCEEESSSCH--
T ss_pred cchheeecc---------------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcC-----CceehhhcCc--
Confidence 444444432 244556666666 34799999999999999999999865 7787 88985
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEE----cccccccCCCCC-cCEEEEcCCC--CCHHHHHHHhcccccCCC----CccE
Q 005837 570 QETRLANMKEFTTSRSKEARLFLVC----TDRASRGIDFAG-VDHVVLFDFP--RDPSEYVRRVGRTARGAG----GTGK 638 (675)
Q Consensus 570 ~~eR~~v~~~F~~g~~~~~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p--~s~~~y~Qr~GRagR~~g----~~g~ 638 (675)
+|. ++.|++|+.+ |||| |+++++|+|+|+ |++||+|++| .+...|+||+||+|| .| ..|.
T Consensus 287 --~r~--~~~f~~g~~~----vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR-~g~~~~~~g~ 357 (414)
T 3oiy_A 287 --EKN--FEDFKVGKIN----ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSR-ILNGVLVKGV 357 (414)
T ss_dssp --HHH--HHHHHTTSCS----EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCC-EETTEECCEE
T ss_pred --chH--HHHHhCCCCe----EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcccc-CCCCCCcceE
Confidence 444 9999999988 9999 999999999999 9999999999 999999999999999 44 5899
Q ss_pred EEEEEeCccHHHHHHHHHHhc
Q 005837 639 AFIFVVGKQVSLAQRIMERNR 659 (675)
Q Consensus 639 ~i~~~~~~d~~~~~~l~~~~~ 659 (675)
|++|+ .+...++.+.+...
T Consensus 358 ~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 358 SVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEE--ccHHHHHHHHHHhc
Confidence 99999 67777777766655
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-42 Score=405.07 Aligned_cols=350 Identities=18% Similarity=0.218 Sum_probs=263.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
.+|+++++++.+.+.+.++||..|+++|.++++. +.+++++++++|||||||++|.+++++.+... ++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----------GG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------CS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----------CC
Confidence 4799999999999999999999999999999999 77899999999999999999999999887642 46
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+++|++|+++|+.|+++.++.+... ++++..++|+....... ...++|+|+||++|..++.+....+.++++|||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 9999999999999999999666543 56788888886654431 236899999999999998886666889999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCC----
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD---- 502 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---- 502 (675)
||+|++. +..+...+..++...+ ..|+|+||||++.. ..+..++... .+... ... ..+...+......
T Consensus 152 DE~H~l~-~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~-~~~~~-~r~--~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 152 DELHYLN-DPERGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAE-PVATN-WRP--VPLIEGVIYPERKKKEY 223 (715)
T ss_dssp CSGGGGG-CTTTHHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCE-EEECC-CCS--SCEEEEEEEECSSTTEE
T ss_pred echhhcC-CcccchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCC-ccCCC-CCC--CCceEEEEecCCcccce
Confidence 9999987 5677777777776665 89999999999742 3344444321 21111 111 1111111100000
Q ss_pred ---CCCCCchhh-hhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc-C---------------------
Q 005837 503 ---QESDKTPET-AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK-E--------------------- 556 (675)
Q Consensus 503 ---~~~~~~~~~-~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~-~--------------------- 556 (675)
......... ........+.+.+. .++++||||+++++|+.++..|.+.... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 000000000 00123444444443 4689999999999999999999875321 0
Q ss_pred ---------CCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC-------CC
Q 005837 557 ---------TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD-------FP 616 (675)
Q Consensus 557 ---------~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d-------~p 616 (675)
....+..+||+|++++|..+++.|++|.++ |||||+++++|||+|++++||+ || .|
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~----vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~ 377 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK----VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDE 377 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC----EEEECGGGGGSSCCCBSEEEECCC-------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe----EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCc
Confidence 012488999999999999999999999998 9999999999999999999999 99 89
Q ss_pred CCHHHHHHHhcccccCCC--CccEEEEEEeCccH
Q 005837 617 RDPSEYVRRVGRTARGAG--GTGKAFIFVVGKQV 648 (675)
Q Consensus 617 ~s~~~y~Qr~GRagR~~g--~~g~~i~~~~~~d~ 648 (675)
.|..+|.||+||||| .| ..|.|++++...+.
T Consensus 378 ~s~~~~~Qr~GRaGR-~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 378 IPIMEYKQMSGRAGR-PGFDQIGESIVVVRDKED 410 (715)
T ss_dssp -CHHHHHHHHTTBCC-TTTCSCEEEEEECSCGGG
T ss_pred CCHHHHHHHhhhcCC-CCCCCCceEEEEeCCchH
Confidence 999999999999999 34 58999999987663
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4e-42 Score=402.50 Aligned_cols=349 Identities=20% Similarity=0.254 Sum_probs=268.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhh-hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
+|+++++++.+.+.+.+.||..|+++|.++++. +.+++++++++|||||||++|.+++++.+... +++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----------GGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----------CSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CCE
Confidence 588999999999999999999999999999998 88899999999999999999999999888643 459
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
++|++|+++|+.|+++.++++... ++++..++|+...... ....++|+|+||++|..++.+....+.++++||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 999999999999999999766553 5778889987665433 12368999999999999888866668899999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|+|++. +..+...+..++..+....|+|++|||++.. ..+..++... .+. ..... ..+...+...........
T Consensus 146 E~H~l~-~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~-~~~-~~~rp--~~l~~~~~~~~~~~~~~~ 218 (720)
T 2zj8_A 146 EIHLIG-SRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAE-LIV-SDWRP--VKLRRGVFYQGFVTWEDG 218 (720)
T ss_dssp TGGGGG-CTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEE-EEE-CCCCS--SEEEEEEEETTEEEETTS
T ss_pred CCcccC-CCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCc-ccC-CCCCC--CcceEEEEeCCeeecccc
Confidence 999998 5567777888877766689999999999752 3455555321 111 11111 111111110000000000
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhccc---------------C-------------CCe
Q 005837 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK---------------E-------------TRV 559 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~---------------~-------------~~~ 559 (675)
.. .....+...+.+.+. .++++||||+++++|+.++..|.+.... . ...
T Consensus 219 ~~-~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 219 SI-DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp CE-EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred ch-hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 00 001123344455444 3579999999999999999999864311 0 012
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC----CCCCHHHHHHHhccccc
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD----FPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d----~p~s~~~y~Qr~GRagR 631 (675)
.+..+||+|++++|..+++.|++|.++ |||||+++++|||+|++++||+ || .|.+..+|+||+|||||
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~----vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR 371 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIK----AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSC----EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCe----EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCC
Confidence 489999999999999999999999998 9999999999999999999999 76 58899999999999999
Q ss_pred CCC--CccEEEEEEeCccH
Q 005837 632 GAG--GTGKAFIFVVGKQV 648 (675)
Q Consensus 632 ~~g--~~g~~i~~~~~~d~ 648 (675)
.| ..|.|++++...+.
T Consensus 372 -~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 372 -PKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp -TTTCSEEEEEEECSSSCH
T ss_pred -CCCCCCceEEEEecCccH
Confidence 44 68999999998873
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=419.25 Aligned_cols=356 Identities=18% Similarity=0.228 Sum_probs=269.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
.|..++++..+...+...++..|+++|.++++.+++++++|++||||||||++|++|++..+.. ++++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~------------g~rv 230 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------------KQRV 230 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT------------TCEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc------------CCeE
Confidence 4555556555555555556668999999999999999999999999999999999999988743 5699
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcC
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDE 428 (675)
||++|+++|+.|+++.+.++.. .+.+++|+... ...++|+|+||++|.+++.+....+.++++|||||
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 9999999999999999999764 46778888763 34589999999999999988777788999999999
Q ss_pred cccccCCccHHHHHHHHHhhCCCCccEEEEecCCCH--HHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCC
Q 005837 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV--EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~--~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 506 (675)
||++. +.++...+..++..++...|+|+||||++. ++...+.........++...... ..+.++++.........
T Consensus 299 aH~l~-d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~ 375 (1108)
T 3l9o_A 299 VHYMR-DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYL 375 (1108)
T ss_dssp GGGTT-SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEE
T ss_pred hhhcc-ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceee
Confidence 99998 778899999999999999999999999875 34455555554433333322221 22233333221110000
Q ss_pred Cc-------------------------------------------hhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHH
Q 005837 507 KT-------------------------------------------PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCR 543 (675)
Q Consensus 507 ~~-------------------------------------------~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~ 543 (675)
.. ...........+...+......++||||+++..|+
T Consensus 376 ~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e 455 (1108)
T 3l9o_A 376 VVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE 455 (1108)
T ss_dssp EEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred eeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHH
Confidence 00 00000223444555566666789999999999999
Q ss_pred HHHHHHHHhcccCC----------------------------------CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCc
Q 005837 544 KVENILKRFDRKET----------------------------------RVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589 (675)
Q Consensus 544 ~l~~~L~~~~~~~~----------------------------------~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~ 589 (675)
.++..|...+.... ...++.+||+|++.+|..+++.|++|.++
T Consensus 456 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik--- 532 (1108)
T 3l9o_A 456 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK--- 532 (1108)
T ss_dssp HHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---
Confidence 99998865432110 01289999999999999999999999998
Q ss_pred eEEEEcccccccCCCCCcCEEEEcCCC--------CCHHHHHHHhcccccCCC--CccEEEEEEeCc-cHHHHHHHHH
Q 005837 590 LFLVCTDRASRGIDFAGVDHVVLFDFP--------RDPSEYVRRVGRTARGAG--GTGKAFIFVVGK-QVSLAQRIME 656 (675)
Q Consensus 590 ~VLVaT~~~~~GiDip~v~~VI~~d~p--------~s~~~y~Qr~GRagR~~g--~~g~~i~~~~~~-d~~~~~~l~~ 656 (675)
|||||+++++|||+|++++||+++.| -|..+|+||+||||| .| ..|.|++++.+. +...++.++.
T Consensus 533 -VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR-~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 533 -VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR-RGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp -EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCC-SSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred -EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCC-CCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 99999999999999999999987653 378889999999999 56 799999999875 4555666654
No 22
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-41 Score=422.92 Aligned_cols=395 Identities=16% Similarity=0.222 Sum_probs=297.6
Q ss_pred ccCCCCCCCcccccccCCCCCCCcccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc-CCCEE
Q 005837 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCI 309 (675)
Q Consensus 231 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~-g~dvi 309 (675)
.+++|..++...++.++....|... ++.+++.+.+.+.-..+.+...+.+...+|..|+|+|.++++.++. ++|++
T Consensus 870 ~sd~w~~~~~~~~~~~~~~~~p~~~---~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvl 946 (1724)
T 4f92_B 870 VSDRWLSCETQLPVSFRHLILPEKY---PPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVF 946 (1724)
T ss_dssp EESSSTTCEEEEEEECTTCCCCCCC---CCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEE
T ss_pred EEccccCCCceeeeccccccCCCCC---CCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEE
Confidence 5799999999999999999988765 7788888888888778888999999999999999999999999975 57899
Q ss_pred EEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH
Q 005837 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389 (675)
Q Consensus 310 i~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~ 389 (675)
++||||||||++|.+|+++.+.+. .+.++||++|+++|+.|+++.+.+......++++..++|+......
T Consensus 947 v~APTGSGKTliaelail~~l~~~----------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~ 1016 (1724)
T 4f92_B 947 VGAPTGSGKTICAEFAILRMLLQS----------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK 1016 (1724)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH
T ss_pred EEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh
Confidence 999999999999999999999763 3568999999999999999999875443467889999998765433
Q ss_pred HHHhhCCCcEEEeCHHHHHHHHHh--cccccccceEEEEcCcccccCCccHHHH-------HHHHHhhCCCCccEEEEec
Q 005837 390 LENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEVA-------LQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 390 ~~~l~~~~~IlV~Tp~~L~~~l~~--~~~~l~~i~~IVIDEaH~l~~~~~~~~~-------l~~il~~~~~~~qiI~lSA 460 (675)
. ..+++|+|+|||+|..++++ ....++++++|||||+|++.+. .... ++.+....+.+.|+|+|||
T Consensus 1017 ~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~--rg~~le~il~rl~~i~~~~~~~~riI~lSA 1091 (1724)
T 4f92_B 1017 L---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE--NGPVLEVICSRMRYISSQIERPIRIVALSS 1091 (1724)
T ss_dssp H---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST--THHHHHHHHHHHHHHHHTTSSCCEEEEEES
T ss_pred h---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC--CCccHHHHHHHHHHHHhhcCCCceEEEEeC
Confidence 2 23579999999999887765 2334788999999999998732 3333 3333455677899999999
Q ss_pred CCCHHHHHHHHHhCCC---CeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHH-HhCCCCceEEEe
Q 005837 461 TLPVEIYNKLVEVFPD---CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFC 536 (675)
Q Consensus 461 T~~~~v~~~l~~~~~~---~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll-~~~~~~k~IVF~ 536 (675)
|++.. ..+..++.. ....+... .+ +..++..+....... ...........+...+ .....+++||||
T Consensus 1092 Tl~N~--~dla~WL~~~~~~~~~~~~~-~R-PvpL~~~i~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~lVF~ 1162 (1724)
T 4f92_B 1092 SLSNA--KDVAHWLGCSATSTFNFHPN-VR-PVPLELHIQGFNISH-----TQTRLLSMAKPVYHAITKHSPKKPVIVFV 1162 (1724)
T ss_dssp CBTTH--HHHHHHHTCCSTTEEECCGG-GC-SSCEEEEEEEECCCS-----HHHHHHTTHHHHHHHHHHHCSSSCEEEEE
T ss_pred CCCCH--HHHHHHhCCCCCCeEEeCCC-CC-CCCeEEEEEeccCCC-----chhhhhhhcchHHHHHHHhcCCCCeeeeC
Confidence 99753 234444421 11122221 11 122333333222111 1111111122222333 345678999999
Q ss_pred cchhhHHHHHHHHHHhcccCC-----------------------------CeeEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005837 537 NKIVTCRKVENILKRFDRKET-----------------------------RVRVLPFHAALDQETRLANMKEFTTSRSKE 587 (675)
Q Consensus 537 ~s~~~~~~l~~~L~~~~~~~~-----------------------------~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~ 587 (675)
+|++.|+.++..|........ ...++++||+|++.+|..+++.|++|.++
T Consensus 1163 ~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~- 1241 (1724)
T 4f92_B 1163 PSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ- 1241 (1724)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC-
T ss_pred CCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe-
Confidence 999999999887754321110 13589999999999999999999999999
Q ss_pred CceEEEEcccccccCCCCCcCEEEE----c------CCCCCHHHHHHHhccccc-CCCCccEEEEEEeCccHHHHHHHHH
Q 005837 588 ARLFLVCTDRASRGIDFAGVDHVVL----F------DFPRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGKQVSLAQRIME 656 (675)
Q Consensus 588 ~~~VLVaT~~~~~GiDip~v~~VI~----~------d~p~s~~~y~Qr~GRagR-~~g~~g~~i~~~~~~d~~~~~~l~~ 656 (675)
|||||+++++|||+|++.+||. | ..|.++.+|+||+||||| +.+..|.|++++...+..++++++.
T Consensus 1242 ---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1242 ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp ---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred ---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC
Confidence 9999999999999999999984 2 235689999999999999 2235899999999999999888864
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.2e-42 Score=388.02 Aligned_cols=348 Identities=17% Similarity=0.222 Sum_probs=204.5
Q ss_pred CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
+...|+++|.++++.+++++++++++|||+|||++|++|+++.+.... ...++++||++|+++|+.|+.+.++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999998886531 1236789999999999999999999
Q ss_pred HhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 367 ~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
++... .++++..++|+......+..+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+...+...+..+
T Consensus 77 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 155 (556)
T 4a2p_A 77 HHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 155 (556)
T ss_dssp HHHGG-GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHH
T ss_pred HHhcc-cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHH
Confidence 98763 36788899999877776666667799999999999999988766 78899999999999998543344444444
Q ss_pred Hhh----CCCCccEEEEecCCCH----------HHHHHHHHhCCCCeEEeCCCc----cccCCCceEEEEecCCCCCC--
Q 005837 446 ISS----SPVTAQYLFVTATLPV----------EIYNKLVEVFPDCKVVMGPGM----HRISPGLEEFLVDCSGDQES-- 505 (675)
Q Consensus 446 l~~----~~~~~qiI~lSAT~~~----------~v~~~l~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~~~~~~~-- 505 (675)
+.. ..+..++++||||+.. +....+...+....+...... ....................
T Consensus 156 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
T 4a2p_A 156 LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235 (556)
T ss_dssp HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHH
T ss_pred HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChH
Confidence 332 2456899999999953 111122222221111111100 00000000011110000000
Q ss_pred -------------------------------CCch----hh---------------------------------------
Q 005837 506 -------------------------------DKTP----ET--------------------------------------- 511 (675)
Q Consensus 506 -------------------------------~~~~----~~--------------------------------------- 511 (675)
.... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00
Q ss_pred -----------------------------------------------------hhhhHHHHHHHHHHh----CCCCceEE
Q 005837 512 -----------------------------------------------------AFLNKKSALLQLIEK----SPVSKTIV 534 (675)
Q Consensus 512 -----------------------------------------------------~~~~k~~~l~~ll~~----~~~~k~IV 534 (675)
....|...+.+++.. ..+.++||
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lV 395 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 395 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEE
Confidence 002255555556543 56789999
Q ss_pred EecchhhHHHHHHHHHHhccc-------CCCeeEEEecCCCCHHHHHHHHHHHhc-CCCCCCceEEEEcccccccCCCCC
Q 005837 535 FCNKIVTCRKVENILKRFDRK-------ETRVRVLPFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFAG 606 (675)
Q Consensus 535 F~~s~~~~~~l~~~L~~~~~~-------~~~~~v~~lhg~m~~~eR~~v~~~F~~-g~~~~~~~VLVaT~~~~~GiDip~ 606 (675)
||+++.+++.+++.|++.... ..+.....+||+|++.+|.++++.|++ |..+ |||||+++++|||+|+
T Consensus 396 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~----vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 396 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR----LLIATSVADEGIDIVQ 471 (556)
T ss_dssp EESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC----EEEEEC----------
T ss_pred EEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE----EEEEcCchhcCCCchh
Confidence 999999999999999875100 012345567889999999999999999 8888 9999999999999999
Q ss_pred cCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 607 VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 607 v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
|++||+||+|+|+..|+||+|| || . ..|.|++|+...+..
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR-~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GR-A-AGSKCILVTSKTEVV 511 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC-----------CCEEEEESCHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CC-C-CCceEEEEEeCcchH
Confidence 9999999999999999999999 99 4 899999999887653
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.2e-42 Score=399.79 Aligned_cols=354 Identities=18% Similarity=0.252 Sum_probs=227.6
Q ss_pred HHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 281 ESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 281 ~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
..+..+|+..|+++|.++++++++++|+|+++|||+|||++|++|+++++.... ...++++||++|+++|+.|
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHHH
Confidence 456678999999999999999999999999999999999999999998886532 1234689999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHH
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFE 439 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~ 439 (675)
+.+.++++... .++++..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+...+.
T Consensus 77 ~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~ 155 (696)
T 2ykg_A 77 NKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN 155 (696)
T ss_dssp HHHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHH
T ss_pred HHHHHHHHhcc-CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHH
Confidence 99999998753 46789999999876666666666799999999999999988666 68899999999999998655566
Q ss_pred HHHHHHHhh-----CCCCccEEEEecCCC-------HHHHHHHHHhCC--CCeEEeCCCccc-----cCCCceEEEEecC
Q 005837 440 VALQSLISS-----SPVTAQYLFVTATLP-------VEIYNKLVEVFP--DCKVVMGPGMHR-----ISPGLEEFLVDCS 500 (675)
Q Consensus 440 ~~l~~il~~-----~~~~~qiI~lSAT~~-------~~v~~~l~~~~~--~~~~i~~~~~~~-----~~~~i~~~~~~~~ 500 (675)
..+..++.. ..+..++|+||||+. .+..+.+...+. +...+....... ....-...+....
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 235 (696)
T 2ykg_A 156 MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 235 (696)
T ss_dssp HHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECC
T ss_pred HHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecC
Confidence 555544433 245789999999997 444444444321 111111000000 0000000000000
Q ss_pred CCCC----------------------------------------------------------------------------
Q 005837 501 GDQE---------------------------------------------------------------------------- 504 (675)
Q Consensus 501 ~~~~---------------------------------------------------------------------------- 504 (675)
....
T Consensus 236 ~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (696)
T 2ykg_A 236 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 315 (696)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Confidence 0000
Q ss_pred ---------------------------------CCCchh--h-------------------hhhhHHHHHHHHHHhC---
Q 005837 505 ---------------------------------SDKTPE--T-------------------AFLNKKSALLQLIEKS--- 527 (675)
Q Consensus 505 ---------------------------------~~~~~~--~-------------------~~~~k~~~l~~ll~~~--- 527 (675)
...... . ....+...+.+++...
T Consensus 316 l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~ 395 (696)
T 2ykg_A 316 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 395 (696)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Confidence 000000 0 0123666677777654
Q ss_pred -CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEe--------cCCCCHHHHHHHHHHHhc-CCCCCCceEEEEccc
Q 005837 528 -PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF--------HAALDQETRLANMKEFTT-SRSKEARLFLVCTDR 597 (675)
Q Consensus 528 -~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~l--------hg~m~~~eR~~v~~~F~~-g~~~~~~~VLVaT~~ 597 (675)
+++++||||+++.+++.+++.|+..+.. ..+.+..+ |++|++.+|.++++.|++ |+.+ |||||++
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~----vLVaT~v 470 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN----ILIATSV 470 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-----------------------------CCS----CSEEEES
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc----EEEEech
Confidence 5679999999999999999999986421 12556666 669999999999999998 9888 9999999
Q ss_pred ccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHH
Q 005837 598 ASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650 (675)
Q Consensus 598 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~ 650 (675)
+++|||+|+|++||+||+|+++..|+||+|| || . ..|.|++++...+...
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR-~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-A-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC------------CCCEEEEEESCHHHHH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc-C-CCceEEEEecCCCHHH
Confidence 9999999999999999999999999999999 99 4 7899999998877633
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-41 Score=385.58 Aligned_cols=348 Identities=17% Similarity=0.234 Sum_probs=234.5
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|.++++.+++++++++++|||+|||++|++|+++.+.... ...++++||++|+++|+.|+.+.+.++.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999998886531 1236789999999999999999999987
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
.. .++.+..++|+......+..+..+++|+|+||++|...+..... .+..+++|||||||++.+...+...+..++..
T Consensus 77 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 77 ER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp HT-TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred cc-CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 64 46889999999977776666667799999999999999988766 78899999999999998544555555455443
Q ss_pred C-----CCCccEEEEecCCCHH----------HHHHHHHhCCCCeEEeCCCc----cccCCCceEEEEecCCCCC-----
Q 005837 449 S-----PVTAQYLFVTATLPVE----------IYNKLVEVFPDCKVVMGPGM----HRISPGLEEFLVDCSGDQE----- 504 (675)
Q Consensus 449 ~-----~~~~qiI~lSAT~~~~----------v~~~l~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~~~~~~----- 504 (675)
. .+..+++++|||+... ....+...+....+...... ...................
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHH
Confidence 2 2467999999999541 12222333332222211100 0000001111111110000
Q ss_pred -----------------------------CCCch----h-----------------------------------------
Q 005837 505 -----------------------------SDKTP----E----------------------------------------- 510 (675)
Q Consensus 505 -----------------------------~~~~~----~----------------------------------------- 510 (675)
..... .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 0
Q ss_pred ---------------------------------------------------hhhhhHHHHHHHHHHh----CCCCceEEE
Q 005837 511 ---------------------------------------------------TAFLNKKSALLQLIEK----SPVSKTIVF 535 (675)
Q Consensus 511 ---------------------------------------------------~~~~~k~~~l~~ll~~----~~~~k~IVF 535 (675)
.....|...+.+++.. .+..++|||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF 395 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILF 395 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEE
Confidence 0002345555555543 456899999
Q ss_pred ecchhhHHHHHHHHHHhcccC-------CCeeEEEecCCCCHHHHHHHHHHHhc-CCCCCCceEEEEcccccccCCCCCc
Q 005837 536 CNKIVTCRKVENILKRFDRKE-------TRVRVLPFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFAGV 607 (675)
Q Consensus 536 ~~s~~~~~~l~~~L~~~~~~~-------~~~~v~~lhg~m~~~eR~~v~~~F~~-g~~~~~~~VLVaT~~~~~GiDip~v 607 (675)
|+++.+++.+++.|...+... .+.....+||+|++.+|.++++.|++ |..+ |||||+++++|||+|++
T Consensus 396 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~----vLvaT~~~~~GlDlp~v 471 (555)
T 3tbk_A 396 VKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN----ILIATSVADEGIDIAEC 471 (555)
T ss_dssp CSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS----EEEECCCTTCCEETTSC
T ss_pred eCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee----EEEEcchhhcCCccccC
Confidence 999999999999999864211 12344556779999999999999999 8888 99999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHH
Q 005837 608 DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQ 652 (675)
Q Consensus 608 ~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~ 652 (675)
++||+||+|+|+..|+||+|| || . ..|.|++|+.+.+.....
T Consensus 472 ~~VI~~d~p~s~~~~~Qr~GR-gR-~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 472 NLVILYEYVGNVIKMIQTRGR-GR-A-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp SEEEEESCCSSCCCEECSSCC-CT-T-TSCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCc-Cc-C-CCceEEEEEcCCCHHHHH
Confidence 999999999999999999999 99 4 899999999987755443
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.5e-42 Score=403.10 Aligned_cols=349 Identities=20% Similarity=0.245 Sum_probs=260.9
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 269 SFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 269 ~f~~~~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
+|++++ +++.+.+.++++||..|+++|.++++.+++++++++++|||||||++|.+++++.+.. ++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 477777 8999999999999999999999999999999999999999999999999999988753 45
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+++|++|+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.+....+.++++|||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK--IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT--TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh--cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 899999999999999999966544 35778888988765432 1236899999999999998886666889999999
Q ss_pred cCcccccCCccHHHHHHHHHhhC---CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCC
Q 005837 427 DEVDILFNDEDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~---~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~ 503 (675)
||+|++. +.++...+..++..+ .+..|+|+||||++. ...+..++... .+... ... ..+...+.......
T Consensus 145 DE~H~l~-~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~-~~~~~-~r~--~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 145 DEIHLLD-SEKRGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDAD-YYVSD-WRP--VPLVEGVLCEGTLE 217 (702)
T ss_dssp TTGGGGG-CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCE-EEECC-CCS--SCEEEEEECSSEEE
T ss_pred eeeeecC-CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCC-cccCC-CCC--ccceEEEeeCCeee
Confidence 9999998 455666555554433 568999999999984 23455555422 22111 111 11111111000000
Q ss_pred -CCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccC-------------------------C
Q 005837 504 -ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE-------------------------T 557 (675)
Q Consensus 504 -~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~-------------------------~ 557 (675)
............+...+.+.+. .++++||||+++++|+.++..|.+..... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH
Confidence 0000000000014444555554 45789999999999999999997642110 0
Q ss_pred CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC---CCCCHHHHHHHhcccc
Q 005837 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD---FPRDPSEYVRRVGRTA 630 (675)
Q Consensus 558 ~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d---~p~s~~~y~Qr~GRag 630 (675)
...+..+||+|++++|..+++.|++|.++ |||||+++++|||+|++++||+ || .|.|..+|.||+||||
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~----vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIK----VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCC----EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCe----EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 12478899999999999999999999988 9999999999999999999999 66 6889999999999999
Q ss_pred cCCC--CccEEEEEEeCccH
Q 005837 631 RGAG--GTGKAFIFVVGKQV 648 (675)
Q Consensus 631 R~~g--~~g~~i~~~~~~d~ 648 (675)
| .| ..|.|++++...+.
T Consensus 372 R-~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 372 R-PGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp C-TTTCSCEEEEEECCGGGH
T ss_pred C-CCCCCCceEEEEecCccH
Confidence 9 44 68999999998773
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-40 Score=393.00 Aligned_cols=349 Identities=18% Similarity=0.255 Sum_probs=214.4
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|+..|+++|.++++.++.++++|+++|||+|||++|++|+++.+.... ...++++|||+|+++|+.|+.+.+
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998886531 123678999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQS 444 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~~~l~~ 444 (675)
+++... .++++..++|+......+..+..+++|+|+||++|.+.+....+ .+..+++|||||||++.....+...+..
T Consensus 317 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~ 395 (797)
T 4a2q_A 317 KHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (797)
T ss_dssp HHHHGG-GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHH
T ss_pred HHhccc-CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHH
Confidence 998763 36789999999877776667777899999999999999987666 7889999999999999865455555545
Q ss_pred HHhh----CCCCccEEEEecCCCH----------HHHHHHHHhCCCCeEEeCCCc----cc--cCCCceEEEEe------
Q 005837 445 LISS----SPVTAQYLFVTATLPV----------EIYNKLVEVFPDCKVVMGPGM----HR--ISPGLEEFLVD------ 498 (675)
Q Consensus 445 il~~----~~~~~qiI~lSAT~~~----------~v~~~l~~~~~~~~~i~~~~~----~~--~~~~i~~~~~~------ 498 (675)
++.. ..+..+++++|||+.. +....+...+....+...... .. ..+......+.
T Consensus 396 ~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 475 (797)
T 4a2q_A 396 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP 475 (797)
T ss_dssp HHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCH
T ss_pred HHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcH
Confidence 5443 2556899999999952 122222222222111111100 00 00011100000
Q ss_pred ---------------------------cCCCCCCC-------------------Cch--------------h--------
Q 005837 499 ---------------------------CSGDQESD-------------------KTP--------------E-------- 510 (675)
Q Consensus 499 ---------------------------~~~~~~~~-------------------~~~--------------~-------- 510 (675)
........ ... .
T Consensus 476 ~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 555 (797)
T 4a2q_A 476 FAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 555 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 0
Q ss_pred -----------------h------------------------------------hhhhHHHHHHHHHHh----CCCCceE
Q 005837 511 -----------------T------------------------------------AFLNKKSALLQLIEK----SPVSKTI 533 (675)
Q Consensus 511 -----------------~------------------------------------~~~~k~~~l~~ll~~----~~~~k~I 533 (675)
. ....|...|.+++.. ..+.++|
T Consensus 556 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvL 635 (797)
T 4a2q_A 556 LIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 635 (797)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEE
T ss_pred HhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEE
Confidence 0 002245555666644 5678999
Q ss_pred EEecchhhHHHHHHHHHHhcc-------cCCCeeEEEecCCCCHHHHHHHHHHHhc-CCCCCCceEEEEcccccccCCCC
Q 005837 534 VFCNKIVTCRKVENILKRFDR-------KETRVRVLPFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFA 605 (675)
Q Consensus 534 VF~~s~~~~~~l~~~L~~~~~-------~~~~~~v~~lhg~m~~~eR~~v~~~F~~-g~~~~~~~VLVaT~~~~~GiDip 605 (675)
|||+++..++.+++.|++... ...+..+..+||+|++.+|.++++.|++ |..+ |||||+++++|||+|
T Consensus 636 IF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~----vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 636 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR----LLIATSVADEGIDIV 711 (797)
T ss_dssp EEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS----EEEEECC-------C
T ss_pred EEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce----EEEEcCchhcCCCch
Confidence 999999999999999987410 0012455677999999999999999999 8888 999999999999999
Q ss_pred CcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 606 GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 606 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
+|++||+||+|+|+..|+||+|| || . ..|.|++|+...+..
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR-~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GR-A-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC----------CCCEEEEECCHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CC-C-CCceEEEEEeCCcHH
Confidence 99999999999999999999999 99 4 899999999876643
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-40 Score=391.52 Aligned_cols=338 Identities=20% Similarity=0.260 Sum_probs=257.0
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
++|. |+++|.++++.+.+++++++++|||+|||++|+++++..+.. +.++||++|+++|+.|+++.+
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~------------g~rvL~l~PtkaLa~Q~~~~l 149 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------------KQRVIYTSPIKALSNQKYREL 149 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc------------CCeEEEECChHHHHHHHHHHH
Confidence 3454 999999999999999999999999999999999999887742 469999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
.++.. .+..++|+.... ..++|+|+||++|.+++.+....+.++++|||||+|++. +..+...+..+
T Consensus 150 ~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~-d~~rg~~~e~i 216 (1010)
T 2xgj_A 150 LAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR-DKERGVVWEET 216 (1010)
T ss_dssp HHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGG-CTTTHHHHHHH
T ss_pred HHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhc-ccchhHHHHHH
Confidence 98764 477788887643 257999999999998888777788999999999999998 66778888888
Q ss_pred HhhCCCCccEEEEecCCCHHH--HHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCC-------CCCchh------
Q 005837 446 ISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE-------SDKTPE------ 510 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v--~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~------ 510 (675)
+..++...|+|++|||++... ...+.........++..... +..+.++++....+.. ......
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 888999999999999997642 23333333323222222111 1223333332110000 000000
Q ss_pred ------------------------hh------hhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCC---
Q 005837 511 ------------------------TA------FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET--- 557 (675)
Q Consensus 511 ------------------------~~------~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~--- 557 (675)
.. .......+...+......++||||+++..|+.++..|...+....
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 00 012334455555555667999999999999999998876321100
Q ss_pred -------------------------------CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCC
Q 005837 558 -------------------------------RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG 606 (675)
Q Consensus 558 -------------------------------~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~ 606 (675)
...++.+||+|++.+|..+++.|++|.++ |||||+++++|||+|+
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik----VLVAT~~la~GIDiP~ 450 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK----VLFATETFSIGLNMPA 450 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS----EEEEEGGGGGSTTCCB
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc----EEEEehHhhccCCCCC
Confidence 12388999999999999999999999998 9999999999999999
Q ss_pred cCEEEE----cCC----CCCHHHHHHHhcccccCCCC--ccEEEEEEeCc-cHHHHHHHHH
Q 005837 607 VDHVVL----FDF----PRDPSEYVRRVGRTARGAGG--TGKAFIFVVGK-QVSLAQRIME 656 (675)
Q Consensus 607 v~~VI~----~d~----p~s~~~y~Qr~GRagR~~g~--~g~~i~~~~~~-d~~~~~~l~~ 656 (675)
+++||+ ||. |.++.+|+||+||||| .|. .|.|++++.+. +...+++++.
T Consensus 451 ~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR-~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 451 KTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR-RGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp SEEEESCSEEECSSCEEECCHHHHHHHHTTBCC-TTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred ceEEEeCCcccCCcCCccCCHHHHhHhhhhccc-CCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 999999 998 8899999999999999 554 69999999865 5666666644
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.4e-40 Score=399.24 Aligned_cols=321 Identities=17% Similarity=0.260 Sum_probs=251.8
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|| +|+++|.++++.+++|+|++++||||||||++|+++++..+. .++++|||+||++|+.|+++.+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------------~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------------KGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------------TTCCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------------cCCeEEEEechHHHHHHHHHHH
Confidence 677 699999999999999999999999999999999888887662 3668999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcch---HHHHHHhhCC-CcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-------
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN------- 434 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~---~~~~~~l~~~-~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~------- 434 (675)
++++ ..++++..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 142 ~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 142 QKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 9977 467899999999987 5566667665 99999999999887764 5677899999999998763
Q ss_pred --C-ccHHHH-HHHHHhhCC-----------CCccEEEEecC-CCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEe
Q 005837 435 --D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498 (675)
Q Consensus 435 --~-~~~~~~-l~~il~~~~-----------~~~qiI~lSAT-~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 498 (675)
+ .+|... +..++..++ ...|++++||| .+..+...+...+.. +..........++.+.++.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~---i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC---CCCCBCCCCCCCEEEEEES
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee---EEeccCCCCcCCceeEEEe
Confidence 1 566666 778877665 78899999999 454433222222211 1111112223445555543
Q ss_pred cCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEE-EecCCCCHHHHHHHH
Q 005837 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL-PFHAALDQETRLANM 577 (675)
Q Consensus 499 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~-~lhg~m~~~eR~~v~ 577 (675)
+ .+...+..++... ++++||||++++.|+.++..|+..+ +.+. .+||. |.+ +
T Consensus 295 ~---------------~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g-----~~~~~~lhg~-----rr~-l 347 (1104)
T 4ddu_A 295 S---------------RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK-----FNVGETWSEF-----EKN-F 347 (1104)
T ss_dssp C---------------CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTT-----CCEEESSSSH-----HHH-H
T ss_pred c---------------CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCC-----CCeeeEecCc-----HHH-H
Confidence 3 2445566666663 4799999999999999999999865 7787 89992 555 9
Q ss_pred HHHhcCCCCCCceEEEE----cccccccCCCCC-cCEEEEcCCCC-----------------------------------
Q 005837 578 KEFTTSRSKEARLFLVC----TDRASRGIDFAG-VDHVVLFDFPR----------------------------------- 617 (675)
Q Consensus 578 ~~F~~g~~~~~~~VLVa----T~~~~~GiDip~-v~~VI~~d~p~----------------------------------- 617 (675)
+.|++|+.+ |||| |+++++|||+|+ |++|||||+|.
T Consensus 348 ~~F~~G~~~----VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 423 (1104)
T 4ddu_A 348 EDFKVGKIN----ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEE 423 (1104)
T ss_dssp HHHHHTSCS----EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHH
T ss_pred HHHHCCCCC----EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 9999 999999999999 99999999998
Q ss_pred -------------------------------------CHHHHHHHhccccc-CCCC--ccEEEEEEeCccHHHHHHHHHH
Q 005837 618 -------------------------------------DPSEYVRRVGRTAR-GAGG--TGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 618 -------------------------------------s~~~y~Qr~GRagR-~~g~--~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
++..|+||+||+|| +.|+ .|.+++++ +|...++.|.+.
T Consensus 424 ~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~ 501 (1104)
T 4ddu_A 424 LRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTR 501 (1104)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHH
Confidence 78899999999999 2333 45556555 777777777766
Q ss_pred hc
Q 005837 658 NR 659 (675)
Q Consensus 658 ~~ 659 (675)
..
T Consensus 502 ~~ 503 (1104)
T 4ddu_A 502 LL 503 (1104)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9e-39 Score=354.50 Aligned_cols=334 Identities=22% Similarity=0.249 Sum_probs=246.3
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+.++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 6899999999999999 99999999999999999999887752 24589999999999999999999986
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
.. ....+..+.|+...... ......++|+|+||+.|...+....+.+.++++|||||||++.+...+...+ ..+...
T Consensus 77 ~~-~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~-~~~~~~ 153 (494)
T 1wp9_A 77 NL-PPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIA-REYKRQ 153 (494)
T ss_dssp CS-CGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHH-HHHHHH
T ss_pred Cc-chhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHH-HHHHhc
Confidence 42 33578888888766543 2333468999999999999888877788999999999999998444444444 344444
Q ss_pred CCCccEEEEecCCCH--HHHHHHHHhCCCCeEEeCCCcc----ccCCCceEEE--EecCCC-------------------
Q 005837 450 PVTAQYLFVTATLPV--EIYNKLVEVFPDCKVVMGPGMH----RISPGLEEFL--VDCSGD------------------- 502 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~--~v~~~l~~~~~~~~~i~~~~~~----~~~~~i~~~~--~~~~~~------------------- 502 (675)
.+..++++||||+.. .....+...+............ .......... ......
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999972 2333344444322221111110 0000000000 000000
Q ss_pred --------C-----------------------CCCCch--------------------------h---------------
Q 005837 503 --------Q-----------------------ESDKTP--------------------------E--------------- 510 (675)
Q Consensus 503 --------~-----------------------~~~~~~--------------------------~--------------- 510 (675)
. ...... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence 0 000000 0
Q ss_pred -------------------------hhhhhHHHHHHHHHHh----CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeE
Q 005837 511 -------------------------TAFLNKKSALLQLIEK----SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561 (675)
Q Consensus 511 -------------------------~~~~~k~~~l~~ll~~----~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v 561 (675)
.....|...+.+++.. ..+.++||||+++..++.+++.|.+.+ +.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~-----~~~ 388 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG-----IKA 388 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT-----CCE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC-----CCc
Confidence 0112255566666665 568899999999999999999999874 789
Q ss_pred EEecC--------CCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCC
Q 005837 562 LPFHA--------ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGA 633 (675)
Q Consensus 562 ~~lhg--------~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~ 633 (675)
..+|| +|+..+|.++++.|++|..+ |||||+++++|+|+|++++||+||+|+++..|.||+||+|| .
T Consensus 389 ~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~----vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R-~ 463 (494)
T 1wp9_A 389 KRFVGQASKENDRGLSQREQKLILDEFARGEFN----VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-H 463 (494)
T ss_dssp EEECCSSCC-------CCHHHHHHHHHHHTSCS----EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS-C
T ss_pred EEEeccccccccccCCHHHHHHHHHHHhcCCce----EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC-C
Confidence 99999 99999999999999999988 99999999999999999999999999999999999999999 5
Q ss_pred CCccEEEEEEeCccHH
Q 005837 634 GGTGKAFIFVVGKQVS 649 (675)
Q Consensus 634 g~~g~~i~~~~~~d~~ 649 (675)
|+ |.+++|+...+.+
T Consensus 464 g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 464 MP-GRVIILMAKGTRD 478 (494)
T ss_dssp CC-SEEEEEEETTSHH
T ss_pred CC-ceEEEEEecCCHH
Confidence 66 9999999987643
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=385.15 Aligned_cols=343 Identities=16% Similarity=0.217 Sum_probs=231.2
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHH-HHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~-~~~l~~l 368 (675)
.|+++|.++++.+++++++|+++|||+|||++|++|+++.+...... ..++++|||+|+++|+.|+ .+.++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA------SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH------TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988775421 2346899999999999999 9999998
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHH------HhcccccccceEEEEcCcccccCCccHHHHH
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l------~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l 442 (675)
+.. .+.+..++|+......+..+....+|+|+||++|.+.+ ....+.+..+++|||||||++.....+...+
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 763 47889999998777666666678999999999999877 4455678899999999999987544444444
Q ss_pred HHHHhhC-------------CCCccEEEEecCCCHH-------HHHHHHH---hCCCCeEEeCCCc----cc--cCCCce
Q 005837 443 QSLISSS-------------PVTAQYLFVTATLPVE-------IYNKLVE---VFPDCKVVMGPGM----HR--ISPGLE 493 (675)
Q Consensus 443 ~~il~~~-------------~~~~qiI~lSAT~~~~-------v~~~l~~---~~~~~~~i~~~~~----~~--~~~~i~ 493 (675)
..++... .+..++|+||||+... ....+.. .+....+...... .. ..+...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 4333221 1567999999999852 2222222 2221011110000 00 001111
Q ss_pred EEEEecCCC----------------------CCCCCchh-hh--------------------------------------
Q 005837 494 EFLVDCSGD----------------------QESDKTPE-TA-------------------------------------- 512 (675)
Q Consensus 494 ~~~~~~~~~----------------------~~~~~~~~-~~-------------------------------------- 512 (675)
......... ........ ..
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111100000 00000000 00
Q ss_pred ------------------------------------------------------------hhhHHHHHHHHH----HhCC
Q 005837 513 ------------------------------------------------------------FLNKKSALLQLI----EKSP 528 (675)
Q Consensus 513 ------------------------------------------------------------~~~k~~~l~~ll----~~~~ 528 (675)
...+...+.+++ ...+
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~ 398 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTE 398 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCC
Confidence 001111222222 3334
Q ss_pred -CCceEEEecchhhHHHHHHHHHHhcc-cCCCeeEEEecCC--------CCHHHHHHHHHHHhcCCCCCCceEEEEcccc
Q 005837 529 -VSKTIVFCNKIVTCRKVENILKRFDR-KETRVRVLPFHAA--------LDQETRLANMKEFTTSRSKEARLFLVCTDRA 598 (675)
Q Consensus 529 -~~k~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~v~~lhg~--------m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~ 598 (675)
++++||||+++..++.+++.|++... ...++.+..+||+ |++.+|.++++.|++|+.+ |||||+++
T Consensus 399 ~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~----VLVaT~~~ 474 (699)
T 4gl2_A 399 ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN----LLIATTVA 474 (699)
T ss_dssp SCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C----CSEEECSC
T ss_pred CCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc----EEEEcccc
Confidence 68999999999999999999987510 1113788999999 9999999999999999988 99999999
Q ss_pred cccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 599 SRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 599 ~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
++|||+|+|++||+||+|+|+..|+||+||||| .| +.+++++....
T Consensus 475 ~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr-~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 475 EEGLDIKECNIVIRYGLVTNEIAMVQARGRARA-DE--STYVLVAHSGS 520 (699)
T ss_dssp CTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCS-SS--CEEEEEEESSS
T ss_pred ccCCccccCCEEEEeCCCCCHHHHHHHcCCCCC-CC--ceEEEEEeCCc
Confidence 999999999999999999999999999999877 33 44454544443
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-39 Score=387.03 Aligned_cols=348 Identities=18% Similarity=0.241 Sum_probs=212.7
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.++..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.... ...++++|||+|+++|+.|+.+.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3577899999999999999999999999999999999999987764421 122668999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhccc-ccccceEEEEcCcccccCCccHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQS 444 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~-~l~~i~~IVIDEaH~l~~~~~~~~~l~~ 444 (675)
+++... .++++..++|+.........+..+++|+|+||++|.+.+....+ .+..+++|||||||++.....+...+..
T Consensus 317 ~~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~ 395 (936)
T 4a2w_A 317 KHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (936)
T ss_dssp HHHHHT-TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHhcc-cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHH
Confidence 998763 46889999999876665555666789999999999999987666 6888999999999999865455555555
Q ss_pred HHhh----CCCCccEEEEecCCCH-------HHHH---HHHHhCCCCeEEeCCC----ccccCCCceEEEEecCCCC---
Q 005837 445 LISS----SPVTAQYLFVTATLPV-------EIYN---KLVEVFPDCKVVMGPG----MHRISPGLEEFLVDCSGDQ--- 503 (675)
Q Consensus 445 il~~----~~~~~qiI~lSAT~~~-------~v~~---~l~~~~~~~~~i~~~~----~~~~~~~i~~~~~~~~~~~--- 503 (675)
++.. ..+..++++||||+.. ...+ .+...+....+..... +.............+....
T Consensus 396 ~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 475 (936)
T 4a2w_A 396 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNP 475 (936)
T ss_dssp HHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCH
T ss_pred HHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcH
Confidence 5443 2456899999999952 1112 2222222111111110 0000000011111000000
Q ss_pred ------------------------------CCCCc---------------------h--------------h--------
Q 005837 504 ------------------------------ESDKT---------------------P--------------E-------- 510 (675)
Q Consensus 504 ------------------------------~~~~~---------------------~--------------~-------- 510 (675)
..... . .
T Consensus 476 ~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~a 555 (936)
T 4a2w_A 476 FAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDA 555 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0
Q ss_pred -----------------------------------------------------hhhhhHHHHHHHHHHh----CCCCceE
Q 005837 511 -----------------------------------------------------TAFLNKKSALLQLIEK----SPVSKTI 533 (675)
Q Consensus 511 -----------------------------------------------------~~~~~k~~~l~~ll~~----~~~~k~I 533 (675)
.....|...+.+++.. ..+.++|
T Consensus 556 l~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvL 635 (936)
T 4a2w_A 556 LIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTL 635 (936)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEE
T ss_pred HhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEE
Confidence 0012245556666655 3568999
Q ss_pred EEecchhhHHHHHHHHHHhccc-------CCCeeEEEecCCCCHHHHHHHHHHHhc-CCCCCCceEEEEcccccccCCCC
Q 005837 534 VFCNKIVTCRKVENILKRFDRK-------ETRVRVLPFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFA 605 (675)
Q Consensus 534 VF~~s~~~~~~l~~~L~~~~~~-------~~~~~v~~lhg~m~~~eR~~v~~~F~~-g~~~~~~~VLVaT~~~~~GiDip 605 (675)
|||+++..++.+++.|.+.... ..+..+..+||+|++.+|.++++.|++ |.++ |||||+++++|||+|
T Consensus 636 IF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~----VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 636 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR----LLIATSVADEGIDIV 711 (936)
T ss_dssp EEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS----EEEEECC------CC
T ss_pred EEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee----EEEEeCchhcCCcch
Confidence 9999999999999999875100 012345667999999999999999999 8888 999999999999999
Q ss_pred CcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 606 GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 606 ~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
+|++||+||+|+|+..|+||+|| || . ..|.|++|+...+.
T Consensus 712 ~v~~VI~yD~p~s~~~~iQr~GR-GR-~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GR-A-AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEESCCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CC-C-CCCEEEEEEeCCCH
Confidence 99999999999999999999999 99 4 88999999887654
No 33
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.4e-39 Score=383.74 Aligned_cols=337 Identities=17% Similarity=0.224 Sum_probs=252.2
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|.++++.++++++++++||||+|||++|++++...+.. ++++||++|+++|+.|+++.+.++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~------------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN------------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT------------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc------------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999999999999999999998876532 5689999999999999999999864
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
. ++.+..++|+.... ...+|+|+||++|.+.+......+.++++|||||||++. +.++...+..++..+
T Consensus 107 ~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~-d~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 107 D---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVN-DQDRGVVWEEVIIML 175 (997)
T ss_dssp -----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCC-TTCTTCCHHHHHHHS
T ss_pred C---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccc-ccchHHHHHHHHHhc
Confidence 3 46788888887543 347999999999999888877778999999999999998 667778888888889
Q ss_pred CCCccEEEEecCCCHHH--HHHHHHhCCCCeEEeCCCccccCCCceEEEEecC------CCCCCCC--------------
Q 005837 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS------GDQESDK-------------- 507 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~v--~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~------~~~~~~~-------------- 507 (675)
+...|+|++|||++... ...+.........++...... ..+.+++.... .......
T Consensus 176 ~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 176 PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 99999999999997542 222222211222222211111 11222211100 0000000
Q ss_pred -------------------------------------------------------------chhhhhhhHHHHHHHHHHh
Q 005837 508 -------------------------------------------------------------TPETAFLNKKSALLQLIEK 526 (675)
Q Consensus 508 -------------------------------------------------------------~~~~~~~~k~~~l~~ll~~ 526 (675)
........+...+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 0000012345677778888
Q ss_pred CCCCceEEEecchhhHHHHHHHHHHhcccC----------------------------------CCeeEEEecCCCCHHH
Q 005837 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKE----------------------------------TRVRVLPFHAALDQET 572 (675)
Q Consensus 527 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~----------------------------------~~~~v~~lhg~m~~~e 572 (675)
....++||||++++.|+.++..|...+... ....+..+||+|++.+
T Consensus 334 ~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 334 RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 878899999999999999999986543210 0125789999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC---------CHHHHHHHhcccccCCC--CccEEEE
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR---------DPSEYVRRVGRTARGAG--GTGKAFI 641 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~---------s~~~y~Qr~GRagR~~g--~~g~~i~ 641 (675)
|..+++.|.+|.++ |||||+++++|||+|+ ..||+++.++ |..+|+||+||||| .| ..|.|++
T Consensus 414 R~~v~~~F~~G~~k----VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR-~G~~~~G~vi~ 487 (997)
T 4a4z_A 414 KELIEILFSKGFIK----VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR-RGLDSTGTVIV 487 (997)
T ss_dssp HHHHHHHHHTTCCS----EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC-TTTCSSEEEEE
T ss_pred HHHHHHHHHCCCCc----EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc-CCCCcceEEEE
Confidence 99999999999998 9999999999999999 6677777766 99999999999999 45 7888998
Q ss_pred EEe--CccHHHHHHHHHH
Q 005837 642 FVV--GKQVSLAQRIMER 657 (675)
Q Consensus 642 ~~~--~~d~~~~~~l~~~ 657 (675)
++. ..+...+++++..
T Consensus 488 l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 488 MAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp ECCSSCCCHHHHHHHHHS
T ss_pred ecCCCcchHHHHHHHhcC
Confidence 883 4456666666543
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-38 Score=360.36 Aligned_cols=332 Identities=17% Similarity=0.170 Sum_probs=247.9
Q ss_pred HCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 285 ~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
.+|+ +|+++|..+++.++.|+ |+.|+||+|||++|.+|++.... .++.++||+||++||.|..++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~ 143 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQ 143 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHH
Confidence 4799 99999999999999998 99999999999999999984332 245799999999999999999
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc------ccccccceEEEEcCcccccCCc-
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFNDE- 436 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~i~~IVIDEaH~l~~~~- 436 (675)
+..+..+ .++++.+++||...... ....+++|+|+||++| .+++... .+.+..+.++||||||.|+-+.
T Consensus 144 ~~~l~~~-lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 144 MGKIFEF-LGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHH-TTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999876 57899999999876543 3334689999999999 6666643 3567889999999999987333
Q ss_pred --------------cHHHHHHHHHhhCC---------CCccEE-----------------EEecCCCH---HHHHHHH--
Q 005837 437 --------------DFEVALQSLISSSP---------VTAQYL-----------------FVTATLPV---EIYNKLV-- 471 (675)
Q Consensus 437 --------------~~~~~l~~il~~~~---------~~~qiI-----------------~lSAT~~~---~v~~~l~-- 471 (675)
+|...+..++..++ +..|++ ++|||.+. .+...+.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 37788999998886 357777 88999763 2322221
Q ss_pred HhCC-CC-eEE------eCCC--------------ccc---------------cC-------------------------
Q 005837 472 EVFP-DC-KVV------MGPG--------------MHR---------------IS------------------------- 489 (675)
Q Consensus 472 ~~~~-~~-~~i------~~~~--------------~~~---------------~~------------------------- 489 (675)
.++. +. .++ +... ++. ..
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 1221 11 110 0000 000 00
Q ss_pred -------CCceEEEEecCCCCCCCC-----chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhccc
Q 005837 490 -------PGLEEFLVDCSGDQESDK-----TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRK 555 (675)
Q Consensus 490 -------~~i~~~~~~~~~~~~~~~-----~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~ 555 (675)
+.+. ++.++....... ........|...+...+.. ..+.++||||+|++.++.++..|...+
T Consensus 381 ~~e~~~iY~l~--vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~g-- 456 (844)
T 1tf5_A 381 EEEFRNIYNMQ--VVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG-- 456 (844)
T ss_dssp HHHHHHHHCCC--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHhCCc--eEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC--
Confidence 0001 111111111000 0011223577777777654 246789999999999999999999876
Q ss_pred CCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCC--------CcCEEEEcCCCCCHHHHHHHhc
Q 005837 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA--------GVDHVVLFDFPRDPSEYVRRVG 627 (675)
Q Consensus 556 ~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~G 627 (675)
+.+..+||++.+.+|..+.+.|+.|. |+|||++++||+|++ ++.+||+|++|.|.+.|.||+|
T Consensus 457 ---i~~~vLhg~~~~rEr~ii~~ag~~g~------VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~G 527 (844)
T 1tf5_A 457 ---IPHQVLNAKNHEREAQIIEEAGQKGA------VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 527 (844)
T ss_dssp ---CCCEEECSSCHHHHHHHHTTTTSTTC------EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHT
T ss_pred ---CCEEEeeCCccHHHHHHHHHcCCCCe------EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcC
Confidence 78889999998888877776666553 999999999999999 7889999999999999999999
Q ss_pred ccccCCCCccEEEEEEeCccH
Q 005837 628 RTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 628 RagR~~g~~g~~i~~~~~~d~ 648 (675)
|+|| .|.+|.+++|++.+|.
T Consensus 528 RTGR-qG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 528 RSGR-QGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSG-GGCCEEEEEEEETTSS
T ss_pred cccc-CCCCCeEEEEecHHHH
Confidence 9999 7999999999998773
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.2e-39 Score=390.95 Aligned_cols=325 Identities=19% Similarity=0.234 Sum_probs=245.0
Q ss_pred HHHHHH-CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 280 IESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 280 ~~~l~~-~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
.+.+.+ +||. | ++|.++|+.+++|+|+++++|||||||+ |++|++..+.. .++++|||+||++|+
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa 112 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLV 112 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHH
Confidence 344443 7999 9 9999999999999999999999999998 88898877653 256899999999999
Q ss_pred HHHHHHHHHhhcCCCCc----eEEEEECCcchHHH---HHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCccc
Q 005837 359 SQVLSNCRSLSKCGVPF----RSMVVTGGFRQKTQ---LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (675)
Q Consensus 359 ~Q~~~~l~~l~~~~~~~----~v~~l~gg~~~~~~---~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~ 431 (675)
.|+.+.+++++.. .++ .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+
T Consensus 113 ~Q~~~~l~~l~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~ 186 (1054)
T 1gku_B 113 IQAAETIRKYAEK-AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDA 186 (1054)
T ss_dssp HHHHHHHHHHHTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHH
T ss_pred HHHHHHHHHHHhh-cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhh
Confidence 9999999998764 355 78899999887663 444555 99999999999877654 66899999999999
Q ss_pred ccCCccHHHHHHHHHhhC-----------CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecC
Q 005837 432 LFNDEDFEVALQSLISSS-----------PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (675)
Q Consensus 432 l~~~~~~~~~l~~il~~~-----------~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 500 (675)
+.+ +...+..++..+ +...|++++|||++.. ......++.....+...........+.+.+..
T Consensus 187 ~l~---~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~-- 260 (1054)
T 1gku_B 187 ILK---ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN-- 260 (1054)
T ss_dssp HHT---STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES--
T ss_pred hhh---ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec--
Confidence 983 455666666555 3467899999999765 21111111111111112222223345554441
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH
Q 005837 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580 (675)
Q Consensus 501 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F 580 (675)
. .+...+..++... ++++||||+++++|+.+++.|+.. +.+..+||+| ..+++.|
T Consensus 261 ~-------------~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~-----~~~l~~F 315 (1054)
T 1gku_B 261 D-------------ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATK-----KGDYEKF 315 (1054)
T ss_dssp C-------------CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSS-----SHHHHHH
T ss_pred h-------------hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccH-----HHHHHHH
Confidence 1 2334455666554 478999999999999999998763 6789999998 3788999
Q ss_pred hcCCCCCCceEEEE----cccccccCCCCCc-CEEEEcCCC---------------------------------------
Q 005837 581 TTSRSKEARLFLVC----TDRASRGIDFAGV-DHVVLFDFP--------------------------------------- 616 (675)
Q Consensus 581 ~~g~~~~~~~VLVa----T~~~~~GiDip~v-~~VI~~d~p--------------------------------------- 616 (675)
++|+.+ |||| |+++++|||+|+| ++||++|+|
T Consensus 316 ~~G~~~----VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1054)
T 1gku_B 316 VEGEID----HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVER 391 (1054)
T ss_dssp HHTSCS----EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSS
T ss_pred HcCCCc----EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988 9999 9999999999996 999999999
Q ss_pred --------------------------------CCHHHHHHHhcccccCCCCcc--EEEEEEeCccHHHHHHHHHHhcC
Q 005837 617 --------------------------------RDPSEYVRRVGRTARGAGGTG--KAFIFVVGKQVSLAQRIMERNRK 660 (675)
Q Consensus 617 --------------------------------~s~~~y~Qr~GRagR~~g~~g--~~i~~~~~~d~~~~~~l~~~~~~ 660 (675)
.+..+|+||+||||| .|..| .+++|+...+...++.|.+....
T Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR-~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 392 HIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSR-LFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCC-EETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhh-ccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 799999999999999 44444 57888888888888888776653
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-37 Score=388.65 Aligned_cols=351 Identities=15% Similarity=0.231 Sum_probs=253.3
Q ss_pred CCCCChHHHHHHhhhhh-cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il-~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
||.+|+++|.++++.++ +++|++++||||||||++|.+++++.+.+..... ......+.++||++|+++|+.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~-~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD-GTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT-SSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc-ccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 78899999999999987 4789999999999999999999999987642111 111234679999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc--cccccceEEEEcCcccccCCccHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDILFNDEDFEVALQ 443 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~--~~l~~i~~IVIDEaH~l~~~~~~~~~l~ 443 (675)
++.... .++++..++|+...... ....++|+|+|||+|..++++.. ..+..+++|||||+|.+.+ .....+.
T Consensus 155 ~~~~~~-~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d--~RG~~lE 228 (1724)
T 4f92_B 155 GKRLAT-YGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD--DRGPVLE 228 (1724)
T ss_dssp HHHHTT-TTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS--TTHHHHH
T ss_pred HHHHhh-CCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC--ccHHHHH
Confidence 886653 57889999998765432 12468999999999977765432 2477899999999998863 3333333
Q ss_pred HH-------HhhCCCCccEEEEecCCCHHHHHHHHHhCCCC----eEEeCCCccccCCCceEEEEecCCCCCCCCchhhh
Q 005837 444 SL-------ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC----KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (675)
Q Consensus 444 ~i-------l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~----~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 512 (675)
.+ ....+.+.|+|+||||+++. ..+..++... ...+... .+ +..+++.++...... ....
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~-~R-PvpL~~~~~~~~~~~-----~~~~ 299 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNS-FR-PVPLEQTYVGITEKK-----AIKR 299 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGG-GC-SSCEEEECCEECCCC-----HHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCC-Cc-cCccEEEEeccCCcc-----hhhh
Confidence 32 23456789999999999742 3445555321 1122211 11 122333333222111 1111
Q ss_pred hhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccC--------------------------------CCe
Q 005837 513 FLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKE--------------------------------TRV 559 (675)
Q Consensus 513 ~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~--------------------------------~~~ 559 (675)
.......+...+.. ...+++||||+|++.|+.++..|.+..... ...
T Consensus 300 ~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 379 (1724)
T 4f92_B 300 FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY 379 (1724)
T ss_dssp HHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhc
Confidence 11111222233322 346789999999999999999887642110 013
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEE----cC------CCCCHHHHHHHhccc
Q 005837 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL----FD------FPRDPSEYVRRVGRT 629 (675)
Q Consensus 560 ~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~----~d------~p~s~~~y~Qr~GRa 629 (675)
.++++||+|++++|..+++.|++|.++ |||||+++++|||+|++++||. |+ .|-++.+|+||+|||
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~G~i~----vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFADKHIQ----VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA 455 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHTTCCC----EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTB
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCe----EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhc
Confidence 489999999999999999999999999 9999999999999999999986 43 345899999999999
Q ss_pred cc-CCCCccEEEEEEeCccHHHHHHHHHH
Q 005837 630 AR-GAGGTGKAFIFVVGKQVSLAQRIMER 657 (675)
Q Consensus 630 gR-~~g~~g~~i~~~~~~d~~~~~~l~~~ 657 (675)
|| +.+..|.+++++...+...+..++..
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHHTTT
T ss_pred cCCCCCCccEEEEEecchhHHHHHHHHcC
Confidence 99 34578999999999998888777643
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-38 Score=364.98 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=232.6
Q ss_pred HHHHHHCCCCCChHHHHHHhhhhhcC------CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 280 IESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 280 ~~~l~~~g~~~~~~iQ~~~i~~il~g------~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
.+.+..++| .|+++|.++++.++++ ++++++++||||||++|++|+++.+.. +.+++|++|
T Consensus 359 ~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlvlaP 425 (780)
T 1gm5_A 359 EEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEEECS
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeC
Confidence 344467899 8999999999998875 699999999999999999999988754 458999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEEcCc
Q 005837 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (675)
Q Consensus 354 tr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEa 429 (675)
|++|+.|+++.+.++... .++++..++|+...... +..+.. .++|+|+||+.|.+ ...+.++++|||||+
T Consensus 426 tr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp CHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESC
T ss_pred cHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEeccc
Confidence 999999999999998753 46889999999876653 333444 59999999987632 456889999999999
Q ss_pred ccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCC--CeEEeCCCccccCCCceEEEEecCCCCCCCC
Q 005837 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (675)
Q Consensus 430 H~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~ 507 (675)
|++.. .. +..+.......++++||||+.+...... .+.+ ...+......+ ..+..... ..
T Consensus 500 Hr~g~--~q----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r--~~i~~~~~---~~----- 561 (780)
T 1gm5_A 500 HRFGV--KQ----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGR--KEVQTMLV---PM----- 561 (780)
T ss_dssp CCC-----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSC--CCCEECCC---CS-----
T ss_pred chhhH--HH----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCC--cceEEEEe---cc-----
Confidence 99741 11 1122333456899999999877655433 2322 22221111000 11111111 10
Q ss_pred chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhh--------HHHHHHHHHH-hcccCCCeeEEEecCCCCHHHHHHH
Q 005837 508 TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVT--------CRKVENILKR-FDRKETRVRVLPFHAALDQETRLAN 576 (675)
Q Consensus 508 ~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~--------~~~l~~~L~~-~~~~~~~~~v~~lhg~m~~~eR~~v 576 (675)
.....+...+.. ..+.+++|||++.++ ++.+++.|.+ .. .++.+..+||+|++.+|.++
T Consensus 562 -------~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~---~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 562 -------DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF---PEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp -------STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC------CBCCCCSSSCCSCSHHH
T ss_pred -------chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc---CCCcEEEEeCCCCHHHHHHH
Confidence 122233333332 346789999997654 5566666654 21 23678999999999999999
Q ss_pred HHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCC-CHHHHHHHhcccccCCCCccEEEEEEeCccHH
Q 005837 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR-DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649 (675)
Q Consensus 577 ~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~-s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~ 649 (675)
++.|++|+.+ |||||+++++|+|+|++++||+++.|. +...|.||+||+|| .|..|.|++++.+.+..
T Consensus 632 ~~~F~~G~~~----ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR-~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 632 MLEFAEGRYD----ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGR-GGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp HHHHTTTSSS----BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCC-SSTTCEEECCCCSCCHH
T ss_pred HHHHHCCCCe----EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCc-CCCCCEEEEEECCCChH
Confidence 9999999988 999999999999999999999999996 78999999999999 78999999998854433
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.9e-36 Score=367.38 Aligned_cols=325 Identities=19% Similarity=0.209 Sum_probs=246.2
Q ss_pred cCCCHHHHHHHHH-CCCCCChHHHHHHhhhhhc----CC--CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 005837 273 LGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVE----GK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (675)
Q Consensus 273 ~~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~il~----g~--dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~ 345 (675)
+.++....+.+.. ++|. ++++|.++++.++. ++ +++++++||+|||++|+++++..+. .+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NH 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TT
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hC
Confidence 3455666666644 5765 69999999999886 55 9999999999999999998887653 25
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHhhC-CCcEEEeCHHHHHHHHHhcccccccc
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINL 421 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i 421 (675)
.+++|++||++|+.|+++.+.++... .++++..+.+....... +..+.. .++|+|+||+.+ .....+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l 726 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDL 726 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCcccccc
Confidence 59999999999999999999986542 45778888877655443 233444 599999999865 235678899
Q ss_pred eEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCC
Q 005837 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 501 (675)
++|||||+|++. .. ...+++.+....++++||||+.+.........+.+...+..+...+ ..+..++....
T Consensus 727 ~lvIiDEaH~~g--~~----~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r--~~i~~~~~~~~- 797 (1151)
T 2eyq_A 727 GLLIVDEEHRFG--VR----HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYD- 797 (1151)
T ss_dssp EEEEEESGGGSC--HH----HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBC--BCEEEEEEECC-
T ss_pred ceEEEechHhcC--hH----HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCc--cccEEEEecCC-
Confidence 999999999974 22 2334444556789999999998777665555444333332222211 12232222211
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH
Q 005837 502 DQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580 (675)
Q Consensus 502 ~~~~~~~~~~~~~~k~~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F 580 (675)
.......++.. ..+++++|||+++++++.+++.|++..+ ++.+..+||+|++.+|.++++.|
T Consensus 798 --------------~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p---~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 798 --------------SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP---EARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp --------------HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT---TSCEEECCSSCCHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC---CCeEEEEeCCCCHHHHHHHHHHH
Confidence 11112222222 3467899999999999999999998742 26799999999999999999999
Q ss_pred hcCCCCCCceEEEEcccccccCCCCCcCEEEEcCC-CCCHHHHHHHhcccccCCCCccEEEEEEeCcc
Q 005837 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF-PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQ 647 (675)
Q Consensus 581 ~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~-p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d 647 (675)
++|+.+ |||||+++++|||+|++++||+++. +.++.+|+||+||+|| .|..|.|++++.+.+
T Consensus 861 ~~g~~~----VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR-~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 861 HHQRFN----VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR-SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HTTSCC----EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB-TTBCEEEEEEECCGG
T ss_pred HcCCCc----EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc-CCCceEEEEEECCcc
Confidence 999988 9999999999999999999999988 4689999999999999 789999999987653
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5e-37 Score=345.35 Aligned_cols=321 Identities=15% Similarity=0.141 Sum_probs=230.8
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..|+++|.++++.+++++++++++|||+|||++|++++...+... ++++|||+|+++|+.|+.+.+.++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----------~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----------EGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----------SSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999888777531 349999999999999999999988
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
... ....+..+.|+.....+ +....+|+|+||+.+.. .....+.++++|||||+|++.. ..+..+++.
T Consensus 181 ~~~-~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~ 248 (510)
T 2oca_A 181 RLF-SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISG 248 (510)
T ss_dssp TSS-CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGG
T ss_pred hcC-CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHh
Confidence 653 34677888887665544 45678999999997643 2234577899999999999972 457777788
Q ss_pred CCCCccEEEEecCCCHHHHH--HHHHhCCCCeEEeCCCc------cccCCCceEEEEecCCCCC-----CCCch----hh
Q 005837 449 SPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGM------HRISPGLEEFLVDCSGDQE-----SDKTP----ET 511 (675)
Q Consensus 449 ~~~~~qiI~lSAT~~~~v~~--~l~~~~~~~~~i~~~~~------~~~~~~i~~~~~~~~~~~~-----~~~~~----~~ 511 (675)
+....++++||||++..... .+...+.. ........ ......+....+....... ..... ..
T Consensus 249 ~~~~~~~l~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (510)
T 2oca_A 249 LNNCMFKFGLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT 327 (510)
T ss_dssp CTTCCEEEEEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH
T ss_pred cccCcEEEEEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHh
Confidence 87788999999999654311 11122221 11111110 0001111111121111000 00000 00
Q ss_pred hhhhHHHHHHHHHHhC---CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCC
Q 005837 512 AFLNKKSALLQLIEKS---PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEA 588 (675)
Q Consensus 512 ~~~~k~~~l~~ll~~~---~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~ 588 (675)
....+...+.+++... .+.++||||+ .++++.+++.|.+.+ ..+..+||+|++.+|.++++.|++|+.+
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~-- 399 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGI-- 399 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSC--
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCC--
Confidence 0112334455555443 4456677777 888999999998765 4788999999999999999999999988
Q ss_pred ceEEEEc-ccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe
Q 005837 589 RLFLVCT-DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644 (675)
Q Consensus 589 ~~VLVaT-~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~ 644 (675)
||||| +++++|+|+|++++||+++.|+++..|+||+||+|| .|..+.+++++.
T Consensus 400 --vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR-~g~~~~~v~i~~ 453 (510)
T 2oca_A 400 --IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLR-KHGSKTIATVWD 453 (510)
T ss_dssp --EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHT-TTCCCCCCEEEE
T ss_pred --EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccc-cCCCCceEEEEE
Confidence 99999 999999999999999999999999999999999999 566653444433
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.3e-36 Score=342.77 Aligned_cols=333 Identities=17% Similarity=0.170 Sum_probs=224.4
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|+ +|+++|..+++.++.|+ |+.|+||+|||++|.+|++.... .++.++|++||++||.|.++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHH
Confidence 564 89999999999999997 99999999999999999986542 2457999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcc------cccccceEEEEcCcccccCCc--
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILFNDE-- 436 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~i~~IVIDEaH~l~~~~-- 436 (675)
..+..+ .++++.+++||.+... +.+..+++|+|+||++| +++++... ..+..+.++||||||.|+.+.
T Consensus 136 ~~l~~~-lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 136 RPLFEF-LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHH-TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHh-cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 999876 5789999999987543 33445689999999999 68877542 567889999999999988432
Q ss_pred -------------cHHHHHHHHHhhCCC--------------------CccEE------------------------EEe
Q 005837 437 -------------DFEVALQSLISSSPV--------------------TAQYL------------------------FVT 459 (675)
Q Consensus 437 -------------~~~~~l~~il~~~~~--------------------~~qiI------------------------~lS 459 (675)
+|...+..++..++. ..|++ ++|
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 355667777766653 34543 788
Q ss_pred cCCCH---HHHHHHH--HhCC--------CCeEEeCC--------------Ccccc---------------CCCceE---
Q 005837 460 ATLPV---EIYNKLV--EVFP--------DCKVVMGP--------------GMHRI---------------SPGLEE--- 494 (675)
Q Consensus 460 AT~~~---~v~~~l~--~~~~--------~~~~i~~~--------------~~~~~---------------~~~i~~--- 494 (675)
||.+. .+...+. .++. +..+++.. ++|.. ...+.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 88653 2211110 0010 00000000 00000 000000
Q ss_pred ---------------------------EEEecCCCCCCCC-----chhhhhhhHHHHHHHHHHh--CCCCceEEEecchh
Q 005837 495 ---------------------------FLVDCSGDQESDK-----TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIV 540 (675)
Q Consensus 495 ---------------------------~~~~~~~~~~~~~-----~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~ 540 (675)
-++.++....... ........|...+...+.. ..+.++||||+|++
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie 452 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIE 452 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHH
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 0011111100000 0112234578888887754 35678999999999
Q ss_pred hHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc-------------
Q 005837 541 TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV------------- 607 (675)
Q Consensus 541 ~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v------------- 607 (675)
.++.++..|++.+ +.+..+||++.+.++..+.+.|+.|. |+|||++++||+||+..
T Consensus 453 ~se~Ls~~L~~~g-----i~~~vLnak~~~rEa~iia~agr~G~------VtIATnmAgRGtDI~l~gn~~~~~~~~~~~ 521 (853)
T 2fsf_A 453 KSELVSNELTKAG-----IKHNVLNAKFHANEAAIVAQAGYPAA------VTIATNMAGRGTDIVLGGSWQAEVAALENP 521 (853)
T ss_dssp HHHHHHHHHHHTT-----CCCEECCTTCHHHHHHHHHTTTSTTC------EEEEESCCSSCSCCCTTCCHHHHHHHCSSC
T ss_pred HHHHHHHHHHHCC-----CCEEEecCChhHHHHHHHHhcCCCCe------EEEecccccCCcCccCCCchHhhhhhcccc
Confidence 9999999999876 78889999998888888888898874 99999999999999873
Q ss_pred ------------------------CEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 608 ------------------------DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 608 ------------------------~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
.+||+++.|.|...|.||+||+|| .|.+|.++.|++.+|.
T Consensus 522 ~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGR-qGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 522 TAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGR-QGDAGSSRFYLSMEDA 585 (853)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSG-GGCCEEEEEEEETTSG
T ss_pred hhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhcccccc-CCCCeeEEEEecccHH
Confidence 599999999999999999999999 7999999999998773
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.1e-36 Score=353.54 Aligned_cols=343 Identities=17% Similarity=0.186 Sum_probs=248.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc-CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~-g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
.+|.++++++.+.+.+...+ ..|++.|+++|+.++. +++++++||||||||+ ++|++.. ..... ...++
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~--~~~~~-----~~~g~ 141 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL--FDEMP-----HLENT 141 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH--HHHCG-----GGGTC
T ss_pred CCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH--Hhccc-----cCCCc
Confidence 57999999999999998877 6788999999988775 5789999999999999 4565522 11100 01256
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+++|++|+++|+.|+++.+.+.........+......... .....+|+|+||+++.+.+... ..+.++++|||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 8999999999999999887665432222222221111111 1235789999999999877663 45889999999
Q ss_pred cCccc-ccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCC
Q 005837 427 DEVDI-LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (675)
Q Consensus 427 DEaH~-l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 505 (675)
||+|. .+....+...++.+.... +..|+|+||||++.+ .+..++....++...... ..+..++......
T Consensus 215 DEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~--- 284 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQR--- 284 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCS---
T ss_pred cCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCch---
Confidence 99996 442222334455555544 578999999999755 344566655454443321 2233333222111
Q ss_pred CCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhc------ccCCCeeEEEecCCCCHHHHHHHHHH
Q 005837 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD------RKETRVRVLPFHAALDQETRLANMKE 579 (675)
Q Consensus 506 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~------~~~~~~~v~~lhg~m~~~eR~~v~~~ 579 (675)
.........+.+++.....+++||||+++++++.+++.|.+.. ....++.+..+||+|++++|.++++.
T Consensus 285 -----~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 285 -----DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp -----CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred -----hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 1111234455556666667899999999999999999998521 12234889999999999999999999
Q ss_pred Hh-----cCCCCCCceEEEEcccccccCCCCCcCEEEEcCC------------------CCCHHHHHHHhcccccCCCCc
Q 005837 580 FT-----TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF------------------PRDPSEYVRRVGRTARGAGGT 636 (675)
Q Consensus 580 F~-----~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~~g~~ 636 (675)
|. +|..+ |||||+++++|||+|+|++||++++ |.|..+|+||+||||| . .+
T Consensus 360 f~~~~~~~g~~k----VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR-~-~~ 433 (773)
T 2xau_A 360 APESHNGRPGRK----VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-T-RP 433 (773)
T ss_dssp CCCCSSSSCCEE----EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGS-S-SS
T ss_pred cccccCCCCceE----EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCC-C-CC
Confidence 99 88777 9999999999999999999999888 8899999999999999 4 89
Q ss_pred cEEEEEEeCccH
Q 005837 637 GKAFIFVVGKQV 648 (675)
Q Consensus 637 g~~i~~~~~~d~ 648 (675)
|.||+|++..+.
T Consensus 434 G~~~~l~~~~~~ 445 (773)
T 2xau_A 434 GKCFRLYTEEAF 445 (773)
T ss_dssp EEEEESSCHHHH
T ss_pred CEEEEEecHHHh
Confidence 999999976554
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-35 Score=337.30 Aligned_cols=334 Identities=16% Similarity=0.138 Sum_probs=250.4
Q ss_pred HCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 285 ~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
.+|+ +|+++|..+++.++.|+ |+.|+||+|||++|.+|++..... +..++|++||++||.|..++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------------g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------------GNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------------TSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------------CCCeEEEeCCHHHHHHHHHH
Confidence 3688 99999999999999997 999999999999999999754322 34799999999999999999
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhc------ccccccceEEEEcCcccccCC--
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFND-- 435 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~i~~IVIDEaH~l~~~-- 435 (675)
+..+..+ .++++.+++||.+.... ....+++|+|+||+.| +++++.. .+.+..+.++||||||.|+.+
T Consensus 172 m~~l~~~-lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 172 MGRVHRF-LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHH-TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 9999886 68999999999875433 3344689999999999 6777653 356778999999999998733
Q ss_pred -------------ccHHHHHHHHHhhCC---------CCccEE-----------------EEecCCCH---HHHHHHH--
Q 005837 436 -------------EDFEVALQSLISSSP---------VTAQYL-----------------FVTATLPV---EIYNKLV-- 471 (675)
Q Consensus 436 -------------~~~~~~l~~il~~~~---------~~~qiI-----------------~lSAT~~~---~v~~~l~-- 471 (675)
.+|...+..++..++ +..|++ ++|||.+. .+.+.+.
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 358888999999987 677888 88999764 3322221
Q ss_pred HhCC-C-------CeEEeCCCc-cccCC----------------C------------ceE--------------------
Q 005837 472 EVFP-D-------CKVVMGPGM-HRISP----------------G------------LEE-------------------- 494 (675)
Q Consensus 472 ~~~~-~-------~~~i~~~~~-~~~~~----------------~------------i~~-------------------- 494 (675)
.++. + ..+++...+ .+..+ . +.+
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 1221 1 111111100 00000 0 000
Q ss_pred ----------EEEecCCCCCCCC-----chhhhhhhHHHHHHHHHHh--CCCCceEEEecchhhHHHHHHHHHHhcccCC
Q 005837 495 ----------FLVDCSGDQESDK-----TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKET 557 (675)
Q Consensus 495 ----------~~~~~~~~~~~~~-----~~~~~~~~k~~~l~~ll~~--~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~ 557 (675)
-++.++....... ........|...+...+.. ..+.++||||+|++.++.++..|++.+
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G---- 484 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR---- 484 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC----
Confidence 0011111110000 0111233577777777644 246789999999999999999999876
Q ss_pred CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc------------------------------
Q 005837 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV------------------------------ 607 (675)
Q Consensus 558 ~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v------------------------------ 607 (675)
+.+..+||++.+.++..+.+.|+.|. |+|||++++||+||+.+
T Consensus 485 -i~~~vLnak~~~rEa~iia~agr~G~------VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (922)
T 1nkt_A 485 -IPHNVLNAKYHEQEATIIAVAGRRGG------VTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWH 557 (922)
T ss_dssp -CCCEEECSSCHHHHHHHHHTTTSTTC------EEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHH
T ss_pred -CCEEEecCChhHHHHHHHHhcCCCCe------EEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHH
Confidence 78888999998888888888888774 99999999999999975
Q ss_pred ----------------------CEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 608 ----------------------DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 608 ----------------------~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
.+||+++.|.|...|.||+||+|| .|.+|.++.|++.+|.
T Consensus 558 ~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGR-qGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 558 SELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGR-QGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSG-GGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhccccc-CCCCeeEEEEechhHH
Confidence 499999999999999999999999 7999999999998875
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.3e-37 Score=337.93 Aligned_cols=287 Identities=18% Similarity=0.161 Sum_probs=208.4
Q ss_pred CCCCChHHHHHHhhhhhcCCCE-EEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSC-ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dv-ii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
|+.+++++|+ +++.+++++++ ++++|||||||++|++|++..+... ++++||++||++|+.|+.+.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----------~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-----------RLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----------CCcEEEECCCHHHHHHHHHHh
Confidence 5678889985 89999998877 8899999999999999999876542 468999999999999999887
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
..+ .+......... ....+..|.++|++.+.+.+... ..+.++++|||||||++ +..+...+..+
T Consensus 69 ~g~-------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~~ 133 (451)
T 2jlq_A 69 RGL-------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYI 133 (451)
T ss_dssp TTS-------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC--SHHHHHHHHHH
T ss_pred cCc-------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC--CcchHHHHHHH
Confidence 532 12211111111 11234679999999998777653 46789999999999987 34444333333
Q ss_pred Hh-hCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHH
Q 005837 446 IS-SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (675)
Q Consensus 446 l~-~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 524 (675)
.. ...+..|+++||||++..+... ...+...+.. ......... .. +...+
T Consensus 134 ~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~-------------~~~~p~~~~---------~~----~~~~l 184 (451)
T 2jlq_A 134 STRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDI-------------EREIPERSW---------NT----GFDWI 184 (451)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEE-------------ECCCCSSCC---------SS----SCHHH
T ss_pred HHhhcCCCceEEEEccCCCccchhh---hcCCCceEec-------------CccCCchhh---------HH----HHHHH
Confidence 22 2345789999999997643211 1111111100 000000000 00 11223
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCC
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDi 604 (675)
... .+++||||+++++|+.+++.|++.+ +.+..+|+.+. .++++.|++|+.+ |||||+++++|||+
T Consensus 185 ~~~-~~~~lVF~~s~~~a~~l~~~L~~~g-----~~~~~lh~~~~----~~~~~~f~~g~~~----vLVaT~v~~~GiDi 250 (451)
T 2jlq_A 185 TDY-QGKTVWFVPSIKAGNDIANCLRKSG-----KRVIQLSRKTF----DTEYPKTKLTDWD----FVVTTDISEMGANF 250 (451)
T ss_dssp HHC-CSCEEEECSSHHHHHHHHHHHHTTT-----CCEEEECTTTH----HHHGGGGGSSCCS----EEEECGGGGSSCCC
T ss_pred HhC-CCCEEEEcCCHHHHHHHHHHHHHcC-----CeEEECCHHHH----HHHHHhhccCCce----EEEECCHHHhCcCC
Confidence 333 4689999999999999999998764 78889999763 5789999999988 99999999999999
Q ss_pred CCcCEEEEcC--------------------CCCCHHHHHHHhcccccCCCC-ccEEEEEEeC
Q 005837 605 AGVDHVVLFD--------------------FPRDPSEYVRRVGRTARGAGG-TGKAFIFVVG 645 (675)
Q Consensus 605 p~v~~VI~~d--------------------~p~s~~~y~Qr~GRagR~~g~-~g~~i~~~~~ 645 (675)
|+ ++||+|| .|.+..+|+||+||||| .|. .|.|++|+..
T Consensus 251 p~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR-~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 251 RA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR-NPAQEDDQYVFSGD 310 (451)
T ss_dssp CC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC-CTTCCCEEEEECSC
T ss_pred CC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCC-CCCCCccEEEEeCC
Confidence 99 9999999 99999999999999999 565 8999988754
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.9e-37 Score=351.38 Aligned_cols=298 Identities=18% Similarity=0.174 Sum_probs=220.4
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..++|+|+.+++.+++++++++++|||||||++|++|+++.+... ++++||++||++|+.|+.+.+..+
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----------~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----------RLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCeEEEEcChHHHHHHHHHHhcCC
Confidence 567788887899999999999999999999999999999888652 568999999999999999887632
Q ss_pred hcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 369 ~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
.+. +.+.... .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+|...+..++..
T Consensus 239 -------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~i~~~ 303 (618)
T 2whx_A 239 -------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYISTR 303 (618)
T ss_dssp -------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC--SHHHHHHHHHHHHH
T ss_pred -------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC--CccHHHHHHHHHHH
Confidence 122 1111100 001123467788999888666553 45889999999999998 46777777777766
Q ss_pred CC-CCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhC
Q 005837 449 SP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS 527 (675)
Q Consensus 449 ~~-~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 527 (675)
++ ...|+++||||++..+.. +... ...+........... ...+...+.+.
T Consensus 304 l~~~~~q~il~SAT~~~~~~~----~~~~------------~~~~~~v~~~~~~~~-------------~~~ll~~l~~~ 354 (618)
T 2whx_A 304 VEMGEAAAIFMTATPPGSTDP----FPQS------------NSPIEDIEREIPERS-------------WNTGFDWITDY 354 (618)
T ss_dssp HHHTSCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCSSC-------------CSSSCHHHHHC
T ss_pred hcccCccEEEEECCCchhhhh----hhcc------------CCceeeecccCCHHH-------------HHHHHHHHHhC
Confidence 54 578999999999765321 1110 000000000000000 00112223332
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v 607 (675)
.+++||||+++++|+.+++.|++.+ +.+..+||. +|.++++.|++|+.+ |||||+++++|||+| +
T Consensus 355 -~~~~LVF~~s~~~a~~l~~~L~~~g-----~~v~~lhg~----~R~~~l~~F~~g~~~----VLVaTdv~~rGiDi~-v 419 (618)
T 2whx_A 355 -QGKTVWFVPSIKAGNDIANCLRKSG-----KRVIQLSRK----TFDTEYPKTKLTDWD----FVVTTDISEMGANFR-A 419 (618)
T ss_dssp -CSCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTT----THHHHTTHHHHSCCS----EEEECGGGGTTCCCC-C
T ss_pred -CCCEEEEECChhHHHHHHHHHHHcC-----CcEEEEChH----HHHHHHHhhcCCCcE----EEEECcHHHcCcccC-c
Confidence 5689999999999999999999875 788999984 788899999999988 999999999999997 9
Q ss_pred CEE--------------------EEcCCCCCHHHHHHHhcccccCCCCccEEEEEEe---CccHHHHHHHHH
Q 005837 608 DHV--------------------VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIME 656 (675)
Q Consensus 608 ~~V--------------------I~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~---~~d~~~~~~l~~ 656 (675)
++| |+|+.|.+.++|+||+||+||.++++|.|++|+. +.+...++.+..
T Consensus 420 ~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred eEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 988 7777799999999999999994345999999997 666555555544
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.2e-36 Score=344.81 Aligned_cols=297 Identities=20% Similarity=0.255 Sum_probs=216.7
Q ss_pred ChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhc
Q 005837 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (675)
Q Consensus 291 ~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~ 370 (675)
++.+|.++++.+.++++++++||||||||++|.+++++ .+.++||++|||+|+.|+++.+.+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 44567777777778899999999999999999998873 244899999999999999998877643
Q ss_pred CCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCC
Q 005837 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (675)
Q Consensus 371 ~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~ 450 (675)
..+....|+.. +..+.+|+|+||++| +.+..+.+.++++|||||||++ +.+|...+..+++.++
T Consensus 283 ----~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l--~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 283 ----IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST--DSTTILGIGTVLDQAE 346 (666)
T ss_dssp ----CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC--SHHHHHHHHHHHHHTT
T ss_pred ----CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc--CccHHHHHHHHHHhhh
Confidence 23455666644 345689999999997 4556677888999999999887 4788888898988887
Q ss_pred CCcc--EEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCC
Q 005837 451 VTAQ--YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP 528 (675)
Q Consensus 451 ~~~q--iI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 528 (675)
...+ ++++|||++..+. ... +.+............... .+.. +....
T Consensus 347 ~~~~~llil~SAT~~~~i~------~~~-------------p~i~~v~~~~~~~i~~~~-------~~~~-----l~~~~ 395 (666)
T 3o8b_A 347 TAGARLVVLATATPPGSVT------VPH-------------PNIEEVALSNTGEIPFYG-------KAIP-----IEAIR 395 (666)
T ss_dssp TTTCSEEEEEESSCTTCCC------CCC-------------TTEEEEECBSCSSEEETT-------EEEC-----GGGSS
T ss_pred hcCCceEEEECCCCCcccc------cCC-------------cceEEEeecccchhHHHH-------hhhh-----hhhcc
Confidence 6666 7788999986310 000 111111111000000000 0000 12235
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~ 608 (675)
.+++||||+++++++.+++.|++.+ +.+..+||+|++++ |.++..+ |||||+++++|||+| ++
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g-----~~v~~lHG~l~q~e-------r~~~~~~----VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLG-----INAVAYYRGLDVSV-------IPTIGDV----VVVATDALMTGYTGD-FD 458 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTT-----CCEEEECTTSCGGG-------SCSSSCE----EEEECTTHHHHCCCC-BS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCC-----CcEEEecCCCCHHH-------HHhCCCc----EEEECChHHccCCCC-Cc
Confidence 6899999999999999999999865 78999999999875 4445445 999999999999997 99
Q ss_pred EEE----------EcC-----------CCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHH--H--HHHHHHhcCCCC
Q 005837 609 HVV----------LFD-----------FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL--A--QRIMERNRKGHP 663 (675)
Q Consensus 609 ~VI----------~~d-----------~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~--~--~~l~~~~~~~~~ 663 (675)
+|| ||| .|.+.++|+||+||+|| +.+|. ++|+.+.+... + +.+++.......
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR--g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~ 535 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR--GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCA 535 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS--SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHH
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC--CCCCE-EEEEecchhhcccccHHHHHHHhcCCcc
Confidence 998 677 89999999999999999 78899 99998877544 3 444444443333
Q ss_pred CCCCCh
Q 005837 664 LHDVPS 669 (675)
Q Consensus 664 ~~~l~~ 669 (675)
..++|.
T Consensus 536 ~~~l~~ 541 (666)
T 3o8b_A 536 WYELTP 541 (666)
T ss_dssp TSCCCH
T ss_pred cccCCc
Confidence 334443
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.7e-36 Score=331.99 Aligned_cols=302 Identities=20% Similarity=0.180 Sum_probs=216.4
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|.++++.++.++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 6899999999999999999999999999999999887743 347999999999999999999884
Q ss_pred cCCCCce-EEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 370 KCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 370 ~~~~~~~-v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
++. +..+.|+... ..+|+|+||+.+...+.. ...++++|||||+|++. ...+.. ++..
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~-~~~~~~----~~~~ 215 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLP-AESYVQ----IAQM 215 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTT-STTTHH----HHHT
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCC-ChHHHH----HHHh
Confidence 355 7777776543 468999999998765542 12458999999999998 455543 4444
Q ss_pred CCCCccEEEEecCCCHHH--HHHHHHhCCCCeEEeCCCcccc----CCCce--EEEEecC--------------------
Q 005837 449 SPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRI----SPGLE--EFLVDCS-------------------- 500 (675)
Q Consensus 449 ~~~~~qiI~lSAT~~~~v--~~~l~~~~~~~~~i~~~~~~~~----~~~i~--~~~~~~~-------------------- 500 (675)
+ ...+++++|||+.... ...+..++... ... ...... ..... ...+...
T Consensus 216 ~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~-~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 216 S-IAPFRLGLTATFEREDGRHEILKEVVGGK-VFE-LFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp C-CCSEEEEEESCCCCTTSGGGSHHHHTCCE-EEE-CCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS
T ss_pred c-CCCeEEEEecCccCCCCHHHHHHHHhCCe-Eee-cCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 4678999999996210 00011111110 000 000000 00000 0000000
Q ss_pred --------CCC----------CCCCc----------hhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHh
Q 005837 501 --------GDQ----------ESDKT----------PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552 (675)
Q Consensus 501 --------~~~----------~~~~~----------~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~ 552 (675)
... ..... .......+...+.+++....++++||||++.+.++.+++.|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-- 370 (472)
T 2fwr_A 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-- 370 (472)
T ss_dssp CCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--
T ss_pred cCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--
Confidence 000 00000 001122466788888888888999999999999999988773
Q ss_pred cccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccC
Q 005837 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG 632 (675)
Q Consensus 553 ~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 632 (675)
+..+||+++..+|.++++.|++|+.+ |||||+++++|+|+|++++||+++.|+++..|+||+||+||
T Consensus 371 --------~~~~~g~~~~~~R~~~~~~F~~g~~~----vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R- 437 (472)
T 2fwr_A 371 --------IPAITHRTSREEREEILEGFRTGRFR----AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR- 437 (472)
T ss_dssp --------CCBCCSSSCSHHHHTHHHHHHHSSCS----BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBC-
T ss_pred --------cceeeCCCCHHHHHHHHHHHhCCCCC----EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccC-
Confidence 34689999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred CCC---ccEEEEEEeCc
Q 005837 633 AGG---TGKAFIFVVGK 646 (675)
Q Consensus 633 ~g~---~g~~i~~~~~~ 646 (675)
.|+ ...+|.|+...
T Consensus 438 ~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 438 PSKGKKEAVLYELISRG 454 (472)
T ss_dssp CCTTTCCEEEEEEEECS
T ss_pred CCCCCceEEEEEEEeCC
Confidence 443 34455556543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.6e-36 Score=331.58 Aligned_cols=278 Identities=18% Similarity=0.214 Sum_probs=189.6
Q ss_pred hhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEE
Q 005837 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l 380 (675)
++++++|+++++|||||||++|++|+++.+... ++++||++||++|+.|+++.+..+. +...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----------~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----------RLRTLVLAPTRVVLSEMKEAFHGLD-------VKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTTTSC-------EEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----------CCeEEEEcchHHHHHHHHHHHhcCC-------eEEe
Confidence 567899999999999999999999999877642 4689999999999999998887442 2221
Q ss_pred ECCcchHHHHHHhhCCCcEEEeCHHHH---------HHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC-C
Q 005837 381 TGGFRQKTQLENLQEGVDVLIATPGRF---------MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-P 450 (675)
Q Consensus 381 ~gg~~~~~~~~~l~~~~~IlV~Tp~~L---------~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~-~ 450 (675)
.+... .++||+++ ...+. ....+.++++|||||+|++ +..+...+..+.... .
T Consensus 66 ~~~~~--------------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~--~~~~~~~~~~~~~~~~~ 128 (440)
T 1yks_A 66 TQAFS--------------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL--DPASIAARGWAAHRARA 128 (440)
T ss_dssp SSCCC--------------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC--SHHHHHHHHHHHHHHHT
T ss_pred cccce--------------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc--CcchHHHHHHHHHHhcc
Confidence 11110 24555433 22222 2345788999999999998 344443333333222 3
Q ss_pred CCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCC
Q 005837 451 VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVS 530 (675)
Q Consensus 451 ~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 530 (675)
...|+++||||++..+.. +... ...+......+...... . +...+... ++
T Consensus 129 ~~~~~l~~SAT~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~---------~----~~~~l~~~-~~ 178 (440)
T 1yks_A 129 NESATILMTATPPGTSDE----FPHS------------NGEIEDVQTDIPSEPWN---------T----GHDWILAD-KR 178 (440)
T ss_dssp TSCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCSSCCS---------S----SCHHHHHC-CS
T ss_pred CCceEEEEeCCCCchhhh----hhhc------------CCCeeEeeeccChHHHH---------H----HHHHHHhc-CC
Confidence 578999999999765321 1100 01111111111111000 0 11122222 57
Q ss_pred ceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEE
Q 005837 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610 (675)
Q Consensus 531 k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~V 610 (675)
++||||++++.++.+++.|++.+ +.+..+|| ++|.++++.|++|+.+ |||||+++++|||+| +++|
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~~-----~~v~~lhg----~~R~~~~~~F~~g~~~----vLVaT~v~e~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKAG-----KSVVVLNR----KTFEREYPTIKQKKPD----FILATDIAEMGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTT-----CCEEECCS----SSCC--------CCCS----EEEESSSTTCCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHcC-----CCEEEecc----hhHHHHHhhhcCCCce----EEEECChhheeeccC-ceEE
Confidence 89999999999999999999864 78999999 4688999999999988 999999999999999 9999
Q ss_pred EE-------------------cCCCCCHHHHHHHhcccccCCCCccEEEEEE---eCccHHHHHHHHHH
Q 005837 611 VL-------------------FDFPRDPSEYVRRVGRTARGAGGTGKAFIFV---VGKQVSLAQRIMER 657 (675)
Q Consensus 611 I~-------------------~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~---~~~d~~~~~~l~~~ 657 (675)
|+ ++.|.+..+|+||+||+||.++..|.|++|+ .+.+..+++.+...
T Consensus 245 I~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 245 LDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp EECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred EeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH
Confidence 96 8889999999999999999336899999996 56666666655443
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.2e-35 Score=341.08 Aligned_cols=297 Identities=19% Similarity=0.211 Sum_probs=208.3
Q ss_pred CChHHHH-----HHhhhhh------cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 290 RPSQIQA-----MAFPPVV------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 290 ~~~~iQ~-----~~i~~il------~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
.|+++|+ ++|+.++ +++|+++++|||||||++|++|+++.+... ++++||++||++|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----------~~~~lilaPTr~La 283 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----------RLRTAVLAPTRVVA 283 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----------CCcEEEEccHHHHH
Confidence 7899999 9999988 899999999999999999999999887542 46899999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccH
Q 005837 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438 (675)
Q Consensus 359 ~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~ 438 (675)
.|+++.+..+. +. ...+.... .-..+.-+-+.+.+.+...+... ..+.++++|||||+|++. ..+
T Consensus 284 ~Q~~~~l~~~~-----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~--~~~ 348 (673)
T 2wv9_A 284 AEMAEALRGLP-----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTD--PAS 348 (673)
T ss_dssp HHHHHHTTTSC-----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCC--HHH
T ss_pred HHHHHHHhcCC-----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccC--ccH
Confidence 99998887542 11 11110000 00112234556666665544442 568899999999999982 333
Q ss_pred HHHHHHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHH
Q 005837 439 EVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517 (675)
Q Consensus 439 ~~~l~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~ 517 (675)
...+..+.... ....|+|+||||++..+.. +... ...+............
T Consensus 349 ~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~----~~~~------------~~~i~~v~~~~~~~~~------------- 399 (673)
T 2wv9_A 349 IAARGYIATRVEAGEAAAIFMTATPPGTSDP----FPDT------------NSPVHDVSSEIPDRAW------------- 399 (673)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCSSCC-------------
T ss_pred HHHHHHHHHhccccCCcEEEEcCCCChhhhh----hccc------------CCceEEEeeecCHHHH-------------
Confidence 33333333333 2578999999999755221 1100 0111111111111000
Q ss_pred HHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc
Q 005837 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597 (675)
Q Consensus 518 ~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~ 597 (675)
..+...+.. ..+++||||+++++++.+++.|++.+ +.+..+||. +|.++++.|++|+.+ |||||++
T Consensus 400 ~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g-----~~v~~lHg~----eR~~v~~~F~~g~~~----VLVaTdv 465 (673)
T 2wv9_A 400 SSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAG-----KRVIQLNRK----SYDTEYPKCKNGDWD----FVITTDI 465 (673)
T ss_dssp SSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTT-----CCEEEECSS----SHHHHGGGGGTCCCS----EEEECGG
T ss_pred HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCC-----CeEEEeChH----HHHHHHHHHHCCCce----EEEECch
Confidence 001122222 46799999999999999999998864 789999994 799999999999988 9999999
Q ss_pred ccccCCCCCcCEEEE--------------------cCCCCCHHHHHHHhcccccCCCCccEEEEEE---eCccHHHHHHH
Q 005837 598 ASRGIDFAGVDHVVL--------------------FDFPRDPSEYVRRVGRTARGAGGTGKAFIFV---VGKQVSLAQRI 654 (675)
Q Consensus 598 ~~~GiDip~v~~VI~--------------------~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~---~~~d~~~~~~l 654 (675)
+++|||+| +++||+ |++|.+.++|+||+||+||..++.|.|++|+ .+.+..+++.+
T Consensus 466 ~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 466 SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 99999999 999998 6789999999999999999437899999996 46665555444
Q ss_pred HH
Q 005837 655 ME 656 (675)
Q Consensus 655 ~~ 656 (675)
..
T Consensus 545 e~ 546 (673)
T 2wv9_A 545 EA 546 (673)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.8e-34 Score=319.89 Aligned_cols=277 Identities=18% Similarity=0.197 Sum_probs=191.9
Q ss_pred HHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCc
Q 005837 296 AMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375 (675)
Q Consensus 296 ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~ 375 (675)
.....++.+++++++++|||||||++|++|+++.+... ++++||++|+++|+.|+.+.+..+
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----------~~~~lvl~Ptr~La~Q~~~~l~g~------- 73 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----------RLRTAVLAPTRVVAAEMAEALRGL------- 73 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----------TCCEEEEECSHHHHHHHHHHTTTS-------
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----------CCcEEEECchHHHHHHHHHHhcCc-------
Confidence 33355566789999999999999999999999887642 468999999999999999888632
Q ss_pred eEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC----CccHHHHHHHHHhhCCC
Q 005837 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN----DEDFEVALQSLISSSPV 451 (675)
Q Consensus 376 ~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~----~~~~~~~l~~il~~~~~ 451 (675)
.+....+..... -..+..+.++|.+.+...+... ..+.++++|||||||++.. ..++.. .+. ...
T Consensus 74 ~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~~~--~~~ 142 (459)
T 2z83_A 74 PVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---TKV--ELG 142 (459)
T ss_dssp CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---HHH--HTT
T ss_pred eEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---HHh--ccC
Confidence 121111111100 1223457889999887666553 5688999999999998521 122211 111 135
Q ss_pred CccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCc
Q 005837 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531 (675)
Q Consensus 452 ~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k 531 (675)
..|+++||||++..+.. +... ...+............ ..+..++... .++
T Consensus 143 ~~~~il~SAT~~~~~~~----~~~~------------~~pi~~~~~~~~~~~~-------------~~~~~~l~~~-~~~ 192 (459)
T 2z83_A 143 EAAAIFMTATPPGTTDP----FPDS------------NAPIHDLQDEIPDRAW-------------SSGYEWITEY-AGK 192 (459)
T ss_dssp SCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCSSCC-------------SSCCHHHHHC-CSC
T ss_pred CccEEEEEcCCCcchhh----hccC------------CCCeEEecccCCcchh-------------HHHHHHHHhc-CCC
Confidence 78999999999854311 1000 0001110000110000 0011223333 578
Q ss_pred eEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEE
Q 005837 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611 (675)
Q Consensus 532 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI 611 (675)
+||||+++++|+.+++.|+..+ +.+..+|+. +|.++++.|++|+.+ |||||+++++|||+|+ ++||
T Consensus 193 ~LVF~~s~~~~~~l~~~L~~~g-----~~v~~lh~~----~R~~~~~~f~~g~~~----iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 193 TVWFVASVKMGNEIAMCLQRAG-----KKVIQLNRK----SYDTEYPKCKNGDWD----FVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT-----CCEEEESTT----CCCCCGGGSSSCCCS----EEEESSCC---CCCSC-SEEE
T ss_pred EEEEeCChHHHHHHHHHHHhcC-----CcEEecCHH----HHHHHHhhccCCCce----EEEECChHHhCeecCC-CEEE
Confidence 9999999999999999999875 788999995 788899999999988 9999999999999999 9999
Q ss_pred E--------------------cCCCCCHHHHHHHhcccccCCCC-ccEEEEEEeCc
Q 005837 612 L--------------------FDFPRDPSEYVRRVGRTARGAGG-TGKAFIFVVGK 646 (675)
Q Consensus 612 ~--------------------~d~p~s~~~y~Qr~GRagR~~g~-~g~~i~~~~~~ 646 (675)
+ |+.|.|..+|+||+||||| .|. +|.|++|+...
T Consensus 259 ~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR-~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 259 DCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR-NPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC-CTTCCCEEEEECSCC
T ss_pred ECCcccccccccccccccccccCCCCCHHHHHHhccccCC-CCCCCCeEEEEEccc
Confidence 9 7799999999999999999 565 99999999875
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.1e-33 Score=308.72 Aligned_cols=269 Identities=20% Similarity=0.208 Sum_probs=189.0
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECC
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg 383 (675)
.++++++++|||||||++|++|+++.+... +++++|++||++|+.|+.+.+. ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecC
Confidence 368999999999999999999999766542 4689999999999999887765 2334444443
Q ss_pred cchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh-CCCCccEEEEecCC
Q 005837 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS-SPVTAQYLFVTATL 462 (675)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~-~~~~~qiI~lSAT~ 462 (675)
.... -..+..+.++|.+.+.+.+.. ...+.++++|||||+|++. ..+......+... .+...|+|+||||+
T Consensus 63 ~~~~-----~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~--~~~~~~~~~l~~~~~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQSE-----RTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD--PASVAARGYIETRVSMGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHHHTTSCEEEEEESSC
T ss_pred cccc-----CCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC--ccHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 2211 112356778899988766655 4568899999999999983 3444443333333 24579999999999
Q ss_pred CHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhH
Q 005837 463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542 (675)
Q Consensus 463 ~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~ 542 (675)
+..+.. +... ...+.......... ....+...+... .+++||||++++++
T Consensus 135 ~~~~~~----~~~~------------~~~i~~~~~~~~~~-------------~~~~~~~~l~~~-~~~~lVF~~~~~~~ 184 (431)
T 2v6i_A 135 PGTTEA----FPPS------------NSPIIDEETRIPDK-------------AWNSGYEWITEF-DGRTVWFVHSIKQG 184 (431)
T ss_dssp TTCCCS----SCCC------------SSCCEEEECCCCSS-------------CCSSCCHHHHSC-SSCEEEECSSHHHH
T ss_pred Ccchhh----hcCC------------CCceeeccccCCHH-------------HHHHHHHHHHcC-CCCEEEEeCCHHHH
Confidence 863210 0000 01111111111110 001122333433 56899999999999
Q ss_pred HHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCE-------------
Q 005837 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH------------- 609 (675)
Q Consensus 543 ~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~------------- 609 (675)
+.+++.|++.+ +.+..+||+ +|.++++.|++|+.+ |||||+++++|+|+| +.+
T Consensus 185 ~~l~~~L~~~~-----~~v~~lhg~----~r~~~~~~f~~g~~~----vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d 250 (431)
T 2v6i_A 185 AEIGTCLQKAG-----KKVLYLNRK----TFESEYPKCKSEKWD----FVITTDISEMGANFK-ADRVIDPRKTIKPILL 250 (431)
T ss_dssp HHHHHHHHHTT-----CCEEEESTT----THHHHTTHHHHSCCS----EEEECGGGGTSCCCC-CSEEEECCEEEEEEEE
T ss_pred HHHHHHHHHcC-----CeEEEeCCc----cHHHHHHhhcCCCCe----EEEECchHHcCcccC-CcEEEecCccccceec
Confidence 99999999864 789999997 578899999999988 999999999999999 655
Q ss_pred ----EEEcCCCCCHHHHHHHhcccccCCC-CccEEEEEE
Q 005837 610 ----VVLFDFPRDPSEYVRRVGRTARGAG-GTGKAFIFV 643 (675)
Q Consensus 610 ----VI~~d~p~s~~~y~Qr~GRagR~~g-~~g~~i~~~ 643 (675)
||+++.|.+..+|+||+||+|| .| +.|.+++|.
T Consensus 251 ~~~~vi~~~~p~~~~~~~Qr~GR~GR-~g~~~~~~~~~~ 288 (431)
T 2v6i_A 251 DGRVSMQGPIAITPASAAQRRGRIGR-NPEKLGDIYAYS 288 (431)
T ss_dssp TTEEEEEEEEECCHHHHHHHHTTSSC-CTTCCCCEEEEC
T ss_pred ccceeecccccCCHHHHHHhhhccCC-CCCCCCeEEEEc
Confidence 6788899999999999999999 55 455555554
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7.7e-33 Score=316.81 Aligned_cols=333 Identities=17% Similarity=0.153 Sum_probs=196.8
Q ss_pred CChHHHHHHhhhhhc----C-CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH-H
Q 005837 290 RPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-S 363 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~----g-~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~-~ 363 (675)
.|+++|.++++.++. + ++++++++||+|||++++..+...+... .. ......++++|||+|+++|+.|+. +
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~--~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WN--RTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CC--SSCSSSCCCEEEEEC-----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-cc--cccccCCCeEEEEeCCHHHHHHHHHH
Confidence 689999999999876 4 6699999999999999765444433321 00 001124679999999999999998 6
Q ss_pred HHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh----cccccccceEEEEcCcccccCCccHH
Q 005837 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE----GILQLINLRCAILDEVDILFNDEDFE 439 (675)
Q Consensus 364 ~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~----~~~~l~~i~~IVIDEaH~l~~~~~~~ 439 (675)
.++.++. .+..+.++ ......+|+|+||++|...... ..+....+++|||||||++... ..
T Consensus 255 ~~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~ 319 (590)
T 3h1t_A 255 TFTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DN 319 (590)
T ss_dssp CCTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--ch
Confidence 6665532 22333322 1234679999999999876542 2345667999999999999731 12
Q ss_pred HHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCc---cccCCCceEEEEecCCCC-------------
Q 005837 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM---HRISPGLEEFLVDCSGDQ------------- 503 (675)
Q Consensus 440 ~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~---~~~~~~i~~~~~~~~~~~------------- 503 (675)
..++.++..++ ..++++||||+..........++........... ...........+......
T Consensus 320 ~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 320 SNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp --CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred HHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 44566666665 5789999999875444444455543222111000 000001111111111000
Q ss_pred --------CCCCch--hhhhhhHH----HHHHHHHHh-CCCCceEEEecchhhHHHHHHHHHHhccc---CCCeeEEEec
Q 005837 504 --------ESDKTP--ETAFLNKK----SALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRK---ETRVRVLPFH 565 (675)
Q Consensus 504 --------~~~~~~--~~~~~~k~----~~l~~ll~~-~~~~k~IVF~~s~~~~~~l~~~L~~~~~~---~~~~~v~~lh 565 (675)
...... ......+. ..+..++.. ...+++||||+++++|+.+++.|.+.+.. ...-.+..+|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~ 478 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVT 478 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECS
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEe
Confidence 000000 00001111 223333333 44579999999999999999999886532 1112377889
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCC--CccEEEEEE
Q 005837 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAG--GTGKAFIFV 643 (675)
Q Consensus 566 g~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g--~~g~~i~~~ 643 (675)
|.++ ++|.++++.|++++.+ ...|||||+++++|||+|++++||+++.|+|+..|+||+||+||... ++..++++-
T Consensus 479 g~~~-~~r~~~l~~F~~~~~~-~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 479 SEEG-KIGKGHLSRFQELETS-TPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp STTH-HHHHHHHHHHHCTTCC-CCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred CCCh-HHHHHHHHHHhCCCCC-CCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 9975 4799999999998754 44588899999999999999999999999999999999999999322 344455443
No 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.3e-32 Score=274.51 Aligned_cols=209 Identities=30% Similarity=0.483 Sum_probs=186.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++.++..... .....+++
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~----~~~~~~~~ 104 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF----LERGDGPI 104 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CCTTCCCS
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc----cccCCCCE
Confidence 57999999999999999999999999999999999999999999999999999999999998865321 11235778
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++... .++.+..++|+.........+..+++|+|+||++|.+++.+....+.++++||||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 999999999999999999998764 4678899999999888888888889999999999999998888889999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeC
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~ 482 (675)
|||++. +.+|...+..++..+++..|++++|||++..+...+..++.++..+..
T Consensus 184 Eah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 184 EADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp THHHHH-HTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHh-hhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 999998 678999999999999999999999999999999988888876655443
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.4e-32 Score=326.05 Aligned_cols=345 Identities=20% Similarity=0.229 Sum_probs=228.8
Q ss_pred CCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+.. ....++|||||+ +|+.||...+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 36899999999998864 589999999999999998777665543 223479999999 99999999996
Q ss_pred HhhcCCCCceEEEEECCcchHHHHH---HhhCCCcEEEeCHHHHHHHHHh-cccccccceEEEEcCcccccCCcc-HHHH
Q 005837 367 SLSKCGVPFRSMVVTGGFRQKTQLE---NLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDED-FEVA 441 (675)
Q Consensus 367 ~l~~~~~~~~v~~l~gg~~~~~~~~---~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~IVIDEaH~l~~~~~-~~~~ 441 (675)
+... +.+..+.++.. ..... ......+|+|+|++.+...... ..+....+++|||||||++.+... ....
T Consensus 221 ~~f~----l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 221 RRFN----LRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHSC----CCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHhC----CCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6542 33444433322 11111 1123479999999988532111 123355799999999999974221 1111
Q ss_pred HHHHHhhCCCCccEEEEecCCCH----HHHHHHHHhCCC---------------------------CeE-----------
Q 005837 442 LQSLISSSPVTAQYLFVTATLPV----EIYNKLVEVFPD---------------------------CKV----------- 479 (675)
Q Consensus 442 l~~il~~~~~~~qiI~lSAT~~~----~v~~~l~~~~~~---------------------------~~~----------- 479 (675)
++.+........+++++|||+.. +++..+.-..+. ...
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 22232222244578999999832 111111100000 000
Q ss_pred -----------------------------------------EeCC---CccccC-CCceEEEEecCCC------------
Q 005837 480 -----------------------------------------VMGP---GMHRIS-PGLEEFLVDCSGD------------ 502 (675)
Q Consensus 480 -----------------------------------------i~~~---~~~~~~-~~i~~~~~~~~~~------------ 502 (675)
++.. .....+ .......+.....
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 0000 000000 0000000000000
Q ss_pred ---------------------CCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeE
Q 005837 503 ---------------------QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561 (675)
Q Consensus 503 ---------------------~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v 561 (675)
.............|...+..++....+.++||||+++..++.++..|.+.. ++.+
T Consensus 456 ~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~----g~~~ 531 (968)
T 3dmq_A 456 ARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE----GIRA 531 (968)
T ss_dssp CCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT----CCCE
T ss_pred hhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc----CCcE
Confidence 000000111223578888899988888999999999999999999998531 2789
Q ss_pred EEecCCCCHHHHHHHHHHHhcCC--CCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE
Q 005837 562 LPFHAALDQETRLANMKEFTTSR--SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639 (675)
Q Consensus 562 ~~lhg~m~~~eR~~v~~~F~~g~--~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~ 639 (675)
..+||+|++.+|..+++.|++|+ .+ |||||+++++|+|+|++++||+||+|+++..|.||+||+|| .|+.+.|
T Consensus 532 ~~lhG~~~~~~R~~~l~~F~~g~~~~~----vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R-~Gq~~~v 606 (968)
T 3dmq_A 532 AVFHEGMSIIERDRAAAWFAEEDTGAQ----VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR-IGQAHDI 606 (968)
T ss_dssp EEECTTSCTTHHHHHHHHHHSTTSSCE----EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSC-SSSCSCC
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCccc----EEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcccc-CCCCceE
Confidence 99999999999999999999997 66 99999999999999999999999999999999999999999 7888877
Q ss_pred EEEEeCccHHHHHHHHHHh
Q 005837 640 FIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 640 i~~~~~~d~~~~~~l~~~~ 658 (675)
++++...+....+.+.+..
T Consensus 607 ~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 607 QIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp EEEEEEETTSHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHH
Confidence 7776655555556665555
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.7e-32 Score=309.91 Aligned_cols=288 Identities=18% Similarity=0.198 Sum_probs=207.7
Q ss_pred hhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEE
Q 005837 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (675)
Q Consensus 299 i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~ 378 (675)
....+++++++++||||||||+ ++++.+... +..+|++|+++||.|+++.+.++ ++.+.
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------------~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~ 207 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------------KSGVYCGPLKLLAHEIFEKSNAA-----GVPCD 207 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------------SSEEEEESSHHHHHHHHHHHHHT-----TCCEE
T ss_pred HHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------------CCeEEEeCHHHHHHHHHHHHHhc-----CCcEE
Confidence 3455788999999999999998 344444432 24599999999999999999886 34678
Q ss_pred EEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCC-CCccEEE
Q 005837 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLF 457 (675)
Q Consensus 379 ~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~-~~~qiI~ 457 (675)
.++|+...... ......+++++|++.+. ....++++||||+|++. +.++...+..++..++ ...++++
T Consensus 208 lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~-d~~~g~~~~~~l~~l~~~~i~il~ 276 (677)
T 3rc3_A 208 LVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIR-DPARGWAWTRALLGLCAEEVHLCG 276 (677)
T ss_dssp EECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGG-CTTTHHHHHHHHHHCCEEEEEEEE
T ss_pred EEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecC-CccchHHHHHHHHccCccceEEEe
Confidence 88888654110 00113678999986542 34678999999999997 7788888888887777 6789999
Q ss_pred EecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEec
Q 005837 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537 (675)
Q Consensus 458 lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~ 537 (675)
+|||. .....+.........+... .+ ........... ..+... ....||||+
T Consensus 277 ~SAT~--~~i~~l~~~~~~~~~v~~~--~r----~~~l~~~~~~l-------------------~~l~~~-~~g~iIf~~ 328 (677)
T 3rc3_A 277 EPAAI--DLVMELMYTTGEEVEVRDY--KR----LTPISVLDHAL-------------------ESLDNL-RPGDCIVCF 328 (677)
T ss_dssp CGGGH--HHHHHHHHHHTCCEEEEEC--CC----SSCEEECSSCC-------------------CSGGGC-CTTEEEECS
T ss_pred ccchH--HHHHHHHHhcCCceEEEEe--ee----cchHHHHHHHH-------------------HHHHhc-CCCCEEEEc
Confidence 99994 3333333333322222111 00 00000100000 001111 245689999
Q ss_pred chhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhc--CCCCCCceEEEEcccccccCCCCCcCEEEEcCC
Q 005837 538 KIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT--SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615 (675)
Q Consensus 538 s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~--g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~ 615 (675)
++++++.+++.|++.+ +.+..+||+|++++|.++++.|++ |..+ |||||+++++|||+ ++++||++++
T Consensus 329 s~~~ie~la~~L~~~g-----~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~----VLVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 329 SKNDIYSVSRQIEIRG-----LESAVIYGSLPPGTKLAQAKKFNDPNDPCK----ILVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp SHHHHHHHHHHHHHTT-----CCCEEECTTSCHHHHHHHHHHHHCTTSSCC----EEEECGGGGSSCCC-CBSEEEESCS
T ss_pred CHHHHHHHHHHHHhcC-----CCeeeeeccCCHHHHHHHHHHHHccCCCeE----EEEeCcHHHCCcCc-CccEEEECCc
Confidence 9999999999999864 789999999999999999999999 7777 99999999999999 8999999999
Q ss_pred --------------CCCHHHHHHHhcccccCCCC---ccEEEEEEeCccHHHHHHHHHHh
Q 005837 616 --------------PRDPSEYVRRVGRTARGAGG---TGKAFIFVVGKQVSLAQRIMERN 658 (675)
Q Consensus 616 --------------p~s~~~y~Qr~GRagR~~g~---~g~~i~~~~~~d~~~~~~l~~~~ 658 (675)
|.+..+|+||+||||| .|. .|.|++++ .++...+++++...
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR-~g~~g~~G~v~~l~-~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGR-FSSRFKEGEVTTMN-HEDLSLLKEILKRP 456 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTC-TTSSCSSEEEEESS-TTHHHHHHHHHHSC
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCC-CCCCCCCEEEEEEe-cchHHHHHHHHhcC
Confidence 7789999999999999 453 57777654 44555666665543
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=3.6e-31 Score=261.15 Aligned_cols=202 Identities=28% Similarity=0.475 Sum_probs=181.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++++++.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---------~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---------KDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---------CCCee
Confidence 479999999999999999999999999999999999999999999999999999999999876432 34568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++......+.+..+.|+.........+..+++|+|+||+++...+.+....+.+++++|+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 99999999999999999999876544678889999988887777777889999999999999998877788999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeE
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV 479 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~ 479 (675)
|||++. +.+|...+..++..++...|++++|||++..+.+.+..++.++..
T Consensus 154 Eah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 154 EADKLL-SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp THHHHT-STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred ChHHhH-hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 999998 678999999999999889999999999999999888888766543
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=278.00 Aligned_cols=208 Identities=24% Similarity=0.370 Sum_probs=181.3
Q ss_pred CCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccC
Q 005837 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339 (675)
Q Consensus 262 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~ 339 (675)
.++.+..+|+++++++.+++.|..+||..|+++|.++|+.++++ +|+++++|||||||++|++|+++++...
T Consensus 86 ~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------ 159 (300)
T 3fmo_B 86 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------ 159 (300)
T ss_dssp CCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc------
Confidence 34455679999999999999999999999999999999999987 9999999999999999999999887432
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-ccccc
Q 005837 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQL 418 (675)
Q Consensus 340 ~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l 418 (675)
..++++||++||++|+.|+++.+++++.....+.+..+.|+...... ....++|+|+||++|.+++.+ ..+.+
T Consensus 160 ---~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 160 ---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred ---CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 34678999999999999999999999876556788888888765433 245689999999999999865 56678
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~ 481 (675)
.++++|||||||++.+..+|...+..++..++..+|++++|||++..+......++.++..+.
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 999999999999998447899999999999999999999999999999999988888776554
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.8e-31 Score=265.50 Aligned_cols=207 Identities=29% Similarity=0.521 Sum_probs=175.3
Q ss_pred ccccc-cCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 268 KSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 268 ~~f~~-~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
.+|++ +++++.+++.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+...... .....++
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---~~~~~~~ 95 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---REQRNGP 95 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CCC
T ss_pred hhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch---hhccCCC
Confidence 57888 7999999999999999999999999999999999999999999999999999999887543211 1123567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
++||++|+++|+.|+.++++++.. .++.+..++|+.........+..+++|+|+||++|.+++......+.++++|||
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 899999999999999999999863 467888999998888877788888999999999999998888888999999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
||||++. +.+|...+..++..+++..|++++|||++..+.+.+..++.++..+
T Consensus 174 DEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 174 DEADKML-DMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp CCHHHHH-HTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred ECHHHHh-ccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 9999998 6789999999999999999999999999999998888877766544
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=264.05 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=182.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005837 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~ 346 (675)
..+|+++++++.+.+.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~~ 112 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQRL 112 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCSS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCCc
Confidence 3579999999999999999999999999999999999999999999999999999999999988653 2456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHh-cccccccceEEE
Q 005837 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAI 425 (675)
Q Consensus 347 ~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~-~~~~l~~i~~IV 425 (675)
++||++|+++|+.|+.+.++++... .++.+..++|+.....+...+..+++|+|+||++|.+.+.+ ..+.+.++++||
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 8999999999999999999998763 45788899999888777777788899999999999988876 456788999999
Q ss_pred EcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEe
Q 005837 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (675)
Q Consensus 426 IDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~ 481 (675)
|||||++. +.+|...+..++..++...|++++|||++..+.+.+..++.++..+.
T Consensus 192 iDEah~l~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 192 MDEADRIL-NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp ECSHHHHH-HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EcChhhhh-ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 99999998 66899999999999988999999999999999988888887665543
No 59
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=4.3e-31 Score=269.50 Aligned_cols=214 Identities=33% Similarity=0.527 Sum_probs=182.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.|..+||..|+++|.++++.+++++|+++++|||+|||++|++|+++.+..............+++
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 57999999999999999999999999999999999999999999999999999999999998865321110111234579
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++... .++.+..+.|+.....+...+..+++|+|+||++|.+++......+.++++||||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 999999999999999999998764 4678889999998888877888889999999999999998877788999999999
Q ss_pred CcccccCCccHHHHHHHHHhhC--CC--CccEEEEecCCCHHHHHHHHHhCCCCeEEeCC
Q 005837 428 EVDILFNDEDFEVALQSLISSS--PV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~--~~--~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~ 483 (675)
|||++. +.+|...+..++..+ +. ..|++++|||++.++......++.++..+...
T Consensus 182 Eah~~~-~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 182 EADRML-DMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp THHHHH-HTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHH-hCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 999998 678999999998853 33 67999999999999988888888766555443
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1e-30 Score=293.18 Aligned_cols=333 Identities=16% Similarity=0.188 Sum_probs=214.8
Q ss_pred CChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.|+|+|.++++++. .+.++|++++||+|||++++..+. .+... ....++|||||+ +|+.||.+++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~---------~~~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE---------NELTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT---------TCCSSEEEEECS-TTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc---------CCCCCEEEEccH-HHHHHHHHHH
Confidence 68999999998874 478999999999999999765444 33321 224579999995 5899999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
+++.. ..++..+.|+... ......+|+|+||+.+..... +....+++||+||||++.+... .....
T Consensus 106 ~~~~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~---~~~~~ 171 (500)
T 1z63_A 106 SKFAP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT---KIFKA 171 (500)
T ss_dssp HHHCT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS---HHHHH
T ss_pred HHHCC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH---HHHHH
Confidence 98753 4566666665432 122357999999999864433 3345689999999999974221 22233
Q ss_pred HhhCCCCccEEEEecCCCHHHHHHHH-------------------------------------HhCCCCeEEeCCCcc--
Q 005837 446 ISSSPVTAQYLFVTATLPVEIYNKLV-------------------------------------EVFPDCKVVMGPGMH-- 486 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v~~~l~-------------------------------------~~~~~~~~i~~~~~~-- 486 (675)
+..+. ..+.+++|||+..+....+. ..+... .+......
T Consensus 172 l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~-~lrr~k~~~~ 249 (500)
T 1z63_A 172 VKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPF-ILRRTKYDKA 249 (500)
T ss_dssp HHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTT-EECCCTTCHH
T ss_pred HHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhH-eeeecccccc
Confidence 33343 46779999998432111111 111111 11110000
Q ss_pred --ccCCCceEEEEecCCCCCCC-----------------Cch----------------------------hhhhhhHHHH
Q 005837 487 --RISPGLEEFLVDCSGDQESD-----------------KTP----------------------------ETAFLNKKSA 519 (675)
Q Consensus 487 --~~~~~i~~~~~~~~~~~~~~-----------------~~~----------------------------~~~~~~k~~~ 519 (675)
...+......+.+.-..... ... ......|...
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 01111111222111000000 000 0001235555
Q ss_pred HHHHHHhC--CCCceEEEecchhhHHHHHHHHHHh-cccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc
Q 005837 520 LLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRF-DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596 (675)
Q Consensus 520 l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~ 596 (675)
+.+++... .+.++||||++...++.++..|... + +.+..+||++++.+|.++++.|+++.. ...+|++|+
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~-----~~~~~~~g~~~~~~R~~~~~~F~~~~~--~~vil~st~ 402 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN-----TEVPFLYGELSKKERDDIISKFQNNPS--VKFIVLSVK 402 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHT-----CCCCEEETTSCHHHHHHHHHHHHHCTT--CCCCEEECC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhC-----CCeEEEECCCCHHHHHHHHHHhcCCCC--CCEEEEecc
Confidence 66666543 5679999999999999999999874 4 677889999999999999999999832 124799999
Q ss_pred cccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE--EEEEeCccHHHHHHHHHHhc
Q 005837 597 RASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA--FIFVVGKQVSLAQRIMERNR 659 (675)
Q Consensus 597 ~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~--i~~~~~~d~~~~~~l~~~~~ 659 (675)
++++|+|+|++++||++|+|+++..|.|++||++| .|+...| +.|+... ...+++.....
T Consensus 403 ~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R-~Gq~~~v~v~~lv~~~--tiee~i~~~~~ 464 (500)
T 1z63_A 403 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR-IGQTRNVIVHKLISVG--TLEEKIDQLLA 464 (500)
T ss_dssp CC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTT-TTTTSCEEEEEEEETT--SHHHHTHHHHT
T ss_pred cccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHH-cCCCCeeEEEEEEeCC--CHHHHHHHHHH
Confidence 99999999999999999999999999999999999 5665555 4445544 33344444433
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=1.3e-30 Score=262.13 Aligned_cols=202 Identities=31% Similarity=0.392 Sum_probs=177.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|+++.+... ..+++
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~~ 94 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLSTQ 94 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCce
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++.....++++..+.|+.........+ .+++|+|+||++|.+++....+.+.++++||||
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 9999999999999999999987654467888999988776655544 468999999999999998877788999999999
Q ss_pred CcccccCCcc-HHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 428 EVDILFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 428 EaH~l~~~~~-~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
|||++. +.+ |...+..++..++...|++++|||++.++.+.+..++.++..+
T Consensus 174 Eah~~~-~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 174 EADKLL-EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp SHHHHH-STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred CchHhh-cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 999998 454 9999999999998899999999999999888777777665444
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=5.7e-31 Score=262.63 Aligned_cols=205 Identities=28% Similarity=0.478 Sum_probs=180.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~ 74 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEVQ 74 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCC---CceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGV---PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~---~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
+||++|+++|+.|+.+.++++..... .+.+..++|+.........+..+++|+|+||+++.+.+.+....+.+++++
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 99999999999999999999876421 567888899887766655556678999999999999998877788999999
Q ss_pred EEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEeC
Q 005837 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (675)
Q Consensus 425 VIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~ 482 (675)
||||||++. +.+|...+..++..++...|++++|||++.++.+.+..++.++..+..
T Consensus 155 ViDEah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 155 VVDEADLML-DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EECSHHHHH-HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEcCchHHh-hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999998 678889999999999889999999999999999888888877655543
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=265.01 Aligned_cols=205 Identities=26% Similarity=0.455 Sum_probs=176.3
Q ss_pred cccccccC--CCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCC
Q 005837 267 RKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (675)
Q Consensus 267 ~~~f~~~~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~ 344 (675)
..+|++++ +++.+++.+.++||..|+++|.++++.++.++|+++++|||+|||++|++|+++.+..... ....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~ 125 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRN 125 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGG
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccC
Confidence 35677777 9999999999999999999999999999999999999999999999999999998876321 1123
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-ccccccceE
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRC 423 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~ 423 (675)
++++||++|+++|+.|+++.++++... ....+..++|+.........+..+++|+|+||++|...+... ...+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 668999999999999999999998764 567788999999888887777788999999999999887764 467889999
Q ss_pred EEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCe
Q 005837 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCK 478 (675)
Q Consensus 424 IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~ 478 (675)
|||||||++. +.+|...+..++..++...|+++||||++.++.......+....
T Consensus 205 lViDEah~l~-~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRIL-DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHH-HTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHh-hhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 9999999998 67899999999999999999999999999999888877765443
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=4.9e-30 Score=253.06 Aligned_cols=202 Identities=33% Similarity=0.536 Sum_probs=178.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEE
Q 005837 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (675)
Q Consensus 269 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~v 348 (675)
+|+++++++.+.+.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+.... ....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcE
Confidence 589999999999999999999999999999999999999999999999999999999998774321 11346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcC
Q 005837 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (675)
Q Consensus 349 LVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDE 428 (675)
||++|+++|+.|+.+.++++... +++..++|+.........+..+++|+|+||+++.+.+......+.+++++|+||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 99999999999999999998643 678889999887777777777899999999999999988778889999999999
Q ss_pred cccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 429 aH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
||++. +.++...+..++...+...|++++|||++..+.+....++.++..+
T Consensus 153 ah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 153 ADEML-SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp HHHHH-HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred hhHhh-ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 99998 6788999999999998899999999999999888887777666544
No 65
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=3.9e-30 Score=256.63 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=177.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+.+.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 84 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TGQVS 84 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------TTCCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---------CCCEE
Confidence 469999999999999999999999999999999999999999999999999999999999776321 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhC-CCcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~-~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+||++|+++|+.|+.+.++++.....++++..+.|+.........+.. .++|+|+||+++..++......+.+++++||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 999999999999999999998765446788899999887766555543 5799999999999999887778899999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
||||++..+.++...+..++...+...|++++|||++.++.+.+..++.++..+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 999999854688899999999888899999999999998888777777665443
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=2.1e-30 Score=261.91 Aligned_cols=202 Identities=23% Similarity=0.419 Sum_probs=169.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~~ 100 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKETQ 100 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCce
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCC-CcEEEeCHHHHHHHHHhcccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~-~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVI 426 (675)
+||++|+++|+.|+.+.+++++.. .++.+..+.|+.........+..+ ++|+|+||++|.+.+.+....+..+++|||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 999999999999999999998764 457788888888776666666555 899999999999999887778889999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEE
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i 480 (675)
||||++. +.+|...+..++..++...|++++|||++.++.+.+..++.++..+
T Consensus 180 DEah~~~-~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 180 DEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp ESHHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred CCchHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 9999998 6778899999999998899999999999999998888888766544
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=255.39 Aligned_cols=206 Identities=26% Similarity=0.430 Sum_probs=176.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+..... ....+++
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~~ 99 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----TSTDGLG 99 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----cccCCce
Confidence 57999999999999999999999999999999999999999999999999999999999998875321 1123678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhc-ccccccceEEEE
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAIL 426 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~-~~~l~~i~~IVI 426 (675)
+||++|+++|+.|+.+.+++++.. .++.+..++|+.........+ .+++|+|+||++|.+.+... .+.+.++++|||
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCC-CCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 999999999999999999998763 457888899988776665554 46899999999999888764 466789999999
Q ss_pred cCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEe
Q 005837 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (675)
Q Consensus 427 DEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~ 481 (675)
||||++. +.+|...+..++..++...|++++|||++..+......++.++..+.
T Consensus 178 DEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 178 DEADRIL-DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp TTHHHHH-HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred eChHHHh-cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 9999998 67889999999999998999999999999998887777776665543
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=7.5e-30 Score=255.16 Aligned_cols=202 Identities=24% Similarity=0.426 Sum_probs=171.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCE
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~ 347 (675)
.+|+++++++.+++.+.++|+..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~~ 84 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 84 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCce
Confidence 579999999999999999999999999999999999999999999999999999999999877432 34679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEc
Q 005837 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (675)
Q Consensus 348 vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVID 427 (675)
+||++|+++|+.|+.+.++++... .++.+..+.|+.........+.. ++|+|+||++|...+.+....+.++++||||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViD 162 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 162 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEc
Confidence 999999999999999999998753 46778888888776665554444 8999999999999988877888999999999
Q ss_pred CcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHhCCCCeEEe
Q 005837 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (675)
Q Consensus 428 EaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~ 481 (675)
|||++. +.+|...+..++..++...|++++|||++.++...+..++.++..+.
T Consensus 163 Eah~~~-~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 163 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215 (224)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred ChhHHh-hhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEE
Confidence 999998 67888999999999988999999999999999988888887665544
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-29 Score=294.17 Aligned_cols=332 Identities=18% Similarity=0.212 Sum_probs=225.6
Q ss_pred CCChHHHHHHhhhhh----cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHH
Q 005837 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il----~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~ 364 (675)
..++++|.+++++++ .+.++|++.+||+|||++++..+...+... .....+||||| .+|+.||.+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---------~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---------RQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---------SCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---------CCCCCEEEEEC-chHHHHHHHH
Confidence 368999999999876 678999999999999998766555444332 22446899999 6788999999
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHh------------hCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccc
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l------------~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l 432 (675)
+.++. ..+++.++.|+.......... ...++|+|+|++.+...... +....+++|||||||++
T Consensus 305 ~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 305 FEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 88875 357777788776655543322 23578999999999754332 23346899999999999
Q ss_pred cCCccHHHHHHHHHhhCCCCccEEEEecCCC----HHHHHHHHHhCCCCe-----------------------------E
Q 005837 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLP----VEIYNKLVEVFPDCK-----------------------------V 479 (675)
Q Consensus 433 ~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~----~~v~~~l~~~~~~~~-----------------------------~ 479 (675)
.+... .+...+..+ .....+++|||+- .+++..+.-+.+... .
T Consensus 380 kn~~s---~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 380 KNAES---SLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp CCSSS---HHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred cCchh---HHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 63221 223333334 3455689999983 333332222211110 0
Q ss_pred EeCCC--ccccCCCceEEEEecCCCCCC----------------------------------------------------
Q 005837 480 VMGPG--MHRISPGLEEFLVDCSGDQES---------------------------------------------------- 505 (675)
Q Consensus 480 i~~~~--~~~~~~~i~~~~~~~~~~~~~---------------------------------------------------- 505 (675)
+.... .....+......+.+.-....
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 00000 000011111111111100000
Q ss_pred -----CCc------hhhhhhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHH
Q 005837 506 -----DKT------PETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572 (675)
Q Consensus 506 -----~~~------~~~~~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~e 572 (675)
... .......|+..+..++... .+.++||||.....++.+.+.|...+ +.+..+||+++..+
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g-----~~~~~i~G~~~~~e 610 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG-----INFQRLDGTVPSAQ 610 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT-----CCCEEESTTSCHHH
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC-----CCEEEEeCCCCHHH
Confidence 000 0011234666677777653 46799999999999999999998765 78899999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE--EEEEeCc
Q 005837 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA--FIFVVGK 646 (675)
Q Consensus 573 R~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~--i~~~~~~ 646 (675)
|.++++.|+++... .+.+|++|.+++.|||++.+++||+||+++++..+.|++||++| .|+...| |.|+...
T Consensus 611 R~~~i~~F~~~~~~-~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~R-iGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 611 RRISIDHFNSPDSN-DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHR-IGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHHHHHTTSSTTCS-CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSC-SSCCSCEEEEEEEETT
T ss_pred HHHHHHHhhCCCCC-ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHh-cCCCceEEEEEEecCC
Confidence 99999999997654 55699999999999999999999999999999999999999999 5655554 4455544
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=254.62 Aligned_cols=206 Identities=25% Similarity=0.426 Sum_probs=168.5
Q ss_pred cccccc----CCCHHHHHHHHHCCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCC
Q 005837 268 KSFKEL----GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (675)
Q Consensus 268 ~~f~~~----~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~ 343 (675)
.+|+++ ++++.+++.+.++||..|+++|.++++.+++++++++++|||+|||++|++|+++.+... ..
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~ 96 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--------AN 96 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--------CS
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--------cc
Confidence 356665 899999999999999999999999999999999999999999999999999999887432 13
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHH-HHhhCCCcEEEeCHHHHHHHHHhc--cccccc
Q 005837 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-ENLQEGVDVLIATPGRFMFLIKEG--ILQLIN 420 (675)
Q Consensus 344 ~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~-~~l~~~~~IlV~Tp~~L~~~l~~~--~~~l~~ 420 (675)
.++++||++|+++|+.|+.+.++++... .++.+..+.|+....... .....+++|+|+||++|..++... ...+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 4678999999999999999999998763 456666666554333221 122456899999999999998875 467889
Q ss_pred ceEEEEcCcccccCC--ccHHHHHHHHHhhC-CCCccEEEEecCCCHHHHHHHHHhCCCCeEEeC
Q 005837 421 LRCAILDEVDILFND--EDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (675)
Q Consensus 421 i~~IVIDEaH~l~~~--~~~~~~l~~il~~~-~~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~ 482 (675)
+++|||||||++.+. .+|...+..++..+ ....|+++||||++.++...+..++.++..+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~ 240 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSI 240 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEE
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999832 57888888887765 457899999999999999988888876655443
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.6e-28 Score=277.80 Aligned_cols=336 Identities=17% Similarity=0.231 Sum_probs=216.8
Q ss_pred CChHHHHHHhhhhh---------cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 290 RPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 290 ~~~~iQ~~~i~~il---------~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
.++|+|.+++.++. .+..+|++.+||+|||++++..+...+..... ......++|||||+ +|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHHH
Confidence 58899999999874 34679999999999999987766655443210 11123468999997 79999
Q ss_pred HHHHHHHhhcCCCCceEEEEECCcchHHH--HHHhh------CCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccc
Q 005837 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQ--LENLQ------EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (675)
Q Consensus 361 ~~~~l~~l~~~~~~~~v~~l~gg~~~~~~--~~~l~------~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l 432 (675)
|.+++.++... .+.+..+.++...... ..... ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 129 W~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 129 WYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 99999998653 3456666666543221 11111 14789999999886433 2344567899999999999
Q ss_pred cCCccHHHHHHHHHhhCCCCccEEEEecCCCHHH-------HHHH-----------HHhCC-------------------
Q 005837 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI-------YNKL-----------VEVFP------------------- 475 (675)
Q Consensus 433 ~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v-------~~~l-----------~~~~~------------------- 475 (675)
.+.. ....+.+ ..+ .....+++|||+-.+. +.++ .+.+.
T Consensus 205 kn~~--~~~~~al-~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 205 KNSD--NQTYLAL-NSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp CTTC--HHHHHHH-HHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred CChh--hHHHHHH-Hhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 7322 1122222 222 2456799999983321 0000 00000
Q ss_pred -----------CCeEEeCC--CccccCCCceEEEEecCCCC--------------------CCC----------------
Q 005837 476 -----------DCKVVMGP--GMHRISPGLEEFLVDCSGDQ--------------------ESD---------------- 506 (675)
Q Consensus 476 -----------~~~~i~~~--~~~~~~~~i~~~~~~~~~~~--------------------~~~---------------- 506 (675)
.+..+... ......+......+.+.-.. ...
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 00000000 00000111111111110000 000
Q ss_pred ------------------------------CchhhhhhhHHHHHHHHHH---hCCCCceEEEecchhhHHHHHHHHHHhc
Q 005837 507 ------------------------------KTPETAFLNKKSALLQLIE---KSPVSKTIVFCNKIVTCRKVENILKRFD 553 (675)
Q Consensus 507 ------------------------------~~~~~~~~~k~~~l~~ll~---~~~~~k~IVF~~s~~~~~~l~~~L~~~~ 553 (675)
.........|...+..++. ...+.++||||++...++.+...|...+
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 0000011234444444443 3457899999999999999999998865
Q ss_pred ccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCC
Q 005837 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGA 633 (675)
Q Consensus 554 ~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~ 633 (675)
+.+..+||+++..+|.++++.|+++... ...+|++|.++++|||++++++||+||+|+++..|.|++||++| .
T Consensus 441 -----~~~~~l~G~~~~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R-~ 513 (644)
T 1z3i_X 441 -----YLYVRLDGTMSIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR-D 513 (644)
T ss_dssp -----CCEEEECSSCCHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSS-T
T ss_pred -----CCEEEEeCCCCHHHHHHHHHHhcCCCCC-cEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhh-c
Confidence 7889999999999999999999998753 45699999999999999999999999999999999999999999 5
Q ss_pred CCccEE--EEEEeCc
Q 005837 634 GGTGKA--FIFVVGK 646 (675)
Q Consensus 634 g~~g~~--i~~~~~~ 646 (675)
|+...| |.|+...
T Consensus 514 Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 514 GQKKTCYIYRLLSTG 528 (644)
T ss_dssp TCCSCEEEEEEEETT
T ss_pred CCCCceEEEEEEECC
Confidence 655544 4455544
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=3e-27 Score=263.96 Aligned_cols=328 Identities=20% Similarity=0.161 Sum_probs=228.6
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|+ +|+++|....-.+..|+ |..|.||+|||+++.+|++-... .|..+.|++|+..||.|-++++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 454 58899999988888886 99999999999999999874432 2457999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCc--------------------------------------------------chHHHHHHhhC
Q 005837 366 RSLSKCGVPFRSMVVTGGF--------------------------------------------------RQKTQLENLQE 395 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~--------------------------------------------------~~~~~~~~l~~ 395 (675)
..+..+ .++.+.+++... ..... .-..
T Consensus 137 ~~l~~~-Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~er--r~aY 213 (822)
T 3jux_A 137 GPVYLF-LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITR--KEAY 213 (822)
T ss_dssp HHHHHH-TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCH--HHHH
T ss_pred HHHHHH-hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHH--HHHh
Confidence 998876 678888888721 11111 1122
Q ss_pred CCcEEEeCHHHHH-HHHHhc------ccccccceEEEEcCcccccCCc------------c---HH--------------
Q 005837 396 GVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILFNDE------------D---FE-------------- 439 (675)
Q Consensus 396 ~~~IlV~Tp~~L~-~~l~~~------~~~l~~i~~IVIDEaH~l~~~~------------~---~~-------------- 439 (675)
.+||+++|..-|- ++++.. ......+.+.||||+|.++=|. . ..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 4799999998875 556542 2234668899999999542000 0 00
Q ss_pred ------------------------------------HHHHHH---Hhh---CC---------------------------
Q 005837 440 ------------------------------------VALQSL---ISS---SP--------------------------- 450 (675)
Q Consensus 440 ------------------------------------~~l~~i---l~~---~~--------------------------- 450 (675)
..+..+ ++. +.
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 000001 000 00
Q ss_pred ----------------------------------CCccEEEEecCCCHHHHHHHHHhCCCCeEEeCCCccccCCCceE-E
Q 005837 451 ----------------------------------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-F 495 (675)
Q Consensus 451 ----------------------------------~~~qiI~lSAT~~~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~-~ 495 (675)
.-.++.+||+|+..+.. .+.+.+.-. ++..+.... .....+ .
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~-Ef~~iY~l~-vv~IPtnkp-~~R~d~~d 450 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEES-EFVQVYGME-VVVIPTHKP-MIRKDHDD 450 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHH-HHHHHSCCC-EEECCCSSC-CCCEECCC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHH-HHHHHhCCe-EEEECCCCC-cceeecCc
Confidence 01468899999876543 455555433 222222111 111111 0
Q ss_pred EEecCCCCCCCCchhhhhhhHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHH
Q 005837 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573 (675)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR 573 (675)
.+. .....|...+...+... .+.++||||+|++.++.++..|.+.+ +.+..+||+..+.++
T Consensus 451 ~vy------------~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G-----i~~~vLhgkq~~rE~ 513 (822)
T 3jux_A 451 LVF------------RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG-----IPHQVLNAKYHEKEA 513 (822)
T ss_dssp EEE------------SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT-----CCCEEECSCHHHHHH
T ss_pred EEE------------ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC-----CCEEEeeCCchHHHH
Confidence 111 11125777777777542 46789999999999999999999866 788899999666666
Q ss_pred HHHHHHHhcCCCCCCceEEEEcccccccCCCC--------CcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeC
Q 005837 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFA--------GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG 645 (675)
Q Consensus 574 ~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~ 645 (675)
..+...++.|. |+|||++++||+||+ +..+||++++|.|...|.||+||+|| .|.+|.+++|++.
T Consensus 514 ~ii~~ag~~g~------VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGR-qG~~G~a~~fvsl 586 (822)
T 3jux_A 514 EIVAKAGQKGM------VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGR-QGDPGESIFFLSL 586 (822)
T ss_dssp HHHHHHHSTTC------EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSC-SSCCCEEEEEEET
T ss_pred HHHHhCCCCCe------EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCcccc-CCCCeeEEEEech
Confidence 66666776663 999999999999998 56699999999999999999999999 7999999999999
Q ss_pred ccH-------HHHHHHHHHh
Q 005837 646 KQV-------SLAQRIMERN 658 (675)
Q Consensus 646 ~d~-------~~~~~l~~~~ 658 (675)
+|. +.+..++.++
T Consensus 587 eD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 587 EDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp TSHHHHHTTHHHHHHHHHHS
T ss_pred hHHHHHhhhHHHHHHHHHHc
Confidence 883 3344555544
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.5e-27 Score=282.32 Aligned_cols=328 Identities=14% Similarity=0.086 Sum_probs=209.3
Q ss_pred CChHHHHHHhhhhhc--------------CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 290 RPSQIQAMAFPPVVE--------------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~--------------g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
.|+++|.+|++.++. +++++++++||||||+++ +++++.+... ....++|||+|++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~---------~~~~rvLvlvpr~ 340 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL---------DFIDKVFFVVDRK 340 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC---------TTCCEEEEEECGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc---------CCCceEEEEeCcH
Confidence 599999999999875 368999999999999997 5565544321 2245999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhh-CCCcEEEeCHHHHHHHHHhcc--cccccceEEEEcCcccc
Q 005837 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDIL 432 (675)
Q Consensus 356 ~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~-~~~~IlV~Tp~~L~~~l~~~~--~~l~~i~~IVIDEaH~l 432 (675)
+|+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|...+.... ..+..+.+||+||||++
T Consensus 341 eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 341 DLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp GCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 9999999999887642 1224444444444453 468999999999998876532 23567889999999998
Q ss_pred cCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHH----HHHHHhCCCCeEEeCCC--c-cccCCCceEEEEecCC----
Q 005837 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY----NKLVEVFPDCKVVMGPG--M-HRISPGLEEFLVDCSG---- 501 (675)
Q Consensus 433 ~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~----~~l~~~~~~~~~i~~~~--~-~~~~~~i~~~~~~~~~---- 501 (675)
.. ...++.+...++ +.++++||||+..... .....+|+.......-. . ......+...+.....
T Consensus 414 ~~----~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~ 488 (1038)
T 2w00_A 414 QF----GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKS 488 (1038)
T ss_dssp HH----HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHH
T ss_pred cc----hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhh
Confidence 62 233555666664 6899999999864311 11222333221111000 0 0000001100110000
Q ss_pred ---CCC------CCCchhhhhhhHHHHHHH-HHH----hC-------CCCceEEEecchhhHHHHHHHHHHhcc------
Q 005837 502 ---DQE------SDKTPETAFLNKKSALLQ-LIE----KS-------PVSKTIVFCNKIVTCRKVENILKRFDR------ 554 (675)
Q Consensus 502 ---~~~------~~~~~~~~~~~k~~~l~~-ll~----~~-------~~~k~IVF~~s~~~~~~l~~~L~~~~~------ 554 (675)
... ...............+.. ++. .. .+.++||||+|+..|..+++.|.+.+.
T Consensus 489 ~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~ 568 (1038)
T 2w00_A 489 LETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKS 568 (1038)
T ss_dssp HHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccc
Confidence 000 000000001112222222 222 11 245799999999999999999988762
Q ss_pred -cCCCeeE-EEecCC----------C----------CH-----------------------------HHHHHHHHHHhcC
Q 005837 555 -KETRVRV-LPFHAA----------L----------DQ-----------------------------ETRLANMKEFTTS 583 (675)
Q Consensus 555 -~~~~~~v-~~lhg~----------m----------~~-----------------------------~eR~~v~~~F~~g 583 (675)
....+.+ ..+|++ + ++ .+|..+.++|++|
T Consensus 569 ~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g 648 (1038)
T 2w00_A 569 ATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ 648 (1038)
T ss_dssp SSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT
T ss_pred cccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC
Confidence 1122444 445542 2 22 1478899999999
Q ss_pred CCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCC---CccEEEEEEe
Q 005837 584 RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAG---GTGKAFIFVV 644 (675)
Q Consensus 584 ~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g---~~g~~i~~~~ 644 (675)
+++ |||+|+++.+|+|+|.+ +|+.+|.|.+...|+|++||++|... ..|.++.|+.
T Consensus 649 ~i~----ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 649 DID----LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSS----EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCe----EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 988 99999999999999999 78889999999999999999999322 1355555543
No 74
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=5.3e-24 Score=202.22 Aligned_cols=151 Identities=29% Similarity=0.460 Sum_probs=137.0
Q ss_pred CCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
..++.+.++.+... .|...|.+++.....+++||||+++.+++.+++.|...+ +.+..+||+|
T Consensus 7 ~~~i~~~~~~~~~~------------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~ 69 (163)
T 2hjv_A 7 TRNIEHAVIQVREE------------NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG-----YPCDKIHGGM 69 (163)
T ss_dssp CCCEEEEEEECCGG------------GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTS
T ss_pred cccceEEEEECChH------------HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCC
Confidence 35577777766433 588899999988888899999999999999999999865 7899999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccH
Q 005837 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648 (675)
Q Consensus 569 ~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~ 648 (675)
++.+|..+++.|++|..+ |||||+++++|+|+|++++||+|++|+++..|+||+||+|| .|+.|.|++|+.+.+.
T Consensus 70 ~~~~r~~~~~~f~~g~~~----vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R-~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 70 IQEDRFDVMNEFKRGEYR----YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGR-AGNKGKAISFVTAFEK 144 (163)
T ss_dssp CHHHHHHHHHHHHTTSCS----EEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSC-TTCCEEEEEEECGGGH
T ss_pred CHHHHHHHHHHHHcCCCe----EEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCc-CCCCceEEEEecHHHH
Confidence 999999999999999888 99999999999999999999999999999999999999999 7899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 005837 649 SLAQRIMERNRKG 661 (675)
Q Consensus 649 ~~~~~l~~~~~~~ 661 (675)
.+++++.+.....
T Consensus 145 ~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 145 RFLADIEEYIGFE 157 (163)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCC
Confidence 9999998876543
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=4.1e-23 Score=234.69 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=110.6
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|+ +|+++|..+++.++.|+ |+.|.||+|||++|.+|++.... .+..++|++||++||.|.+.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 788 99999999999999998 99999999999999999964432 1347999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHH-HHHHHhcc------cccc---cceEEEEcCccccc
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLI---NLRCAILDEVDILF 433 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L-~~~l~~~~------~~l~---~i~~IVIDEaH~l~ 433 (675)
..+..+ .++++.+++|+.+... ......++|+|+||+.| +++++... +.+. .+.++||||+|.++
T Consensus 141 ~~l~~~-lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRG-LGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHT-TTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHh-cCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999885 6899999999987543 33344689999999999 78887653 4567 89999999999875
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.91 E-value=4e-23 Score=238.02 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=106.5
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v 607 (675)
.+.++||||+++..++.+++.|.+.+ +.+..+||+|++.+|.++++.|+.|..+ |||||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-----i~~~~lh~~~~~~~R~~~~~~f~~g~~~----VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-----IRARYLHHELDAFKRQALIRDLRLGHYD----CLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHTTSCS----EEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-----CCceeecCCCCHHHHHHHHHHhhcCCce----EEEccChhhcCccCCCC
Confidence 45799999999999999999999876 7888999999999999999999999988 99999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHH
Q 005837 608 DHVVLFDF-----PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655 (675)
Q Consensus 608 ~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~ 655 (675)
++||+++. |.+..+|+||+||||| . ..|.|++|+...+..+.+.+.
T Consensus 509 ~lVI~~d~d~~G~p~s~~~~iQr~GRagR-~-~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 509 SLVAILDADKEGFLRSERSLIQTIGRAAR-N-ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTT-S-TTCEEEEECSSCCHHHHHHHH
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHCccCc-C-CCCEEEEEEcCCCHHHHHHHH
Confidence 99999997 8899999999999999 4 589999999987765555443
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=9.5e-24 Score=209.36 Aligned_cols=146 Identities=23% Similarity=0.366 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE
Q 005837 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC 594 (675)
Q Consensus 515 ~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa 594 (675)
.|...+.+++....++++||||+++.+++.++..|...+ +.+..+||+|++.+|..+++.|++|..+ ||||
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~----vlva 87 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDLSQGERERVLGAFRQGEVR----VLVA 87 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT-----CCEEEECSSSCHHHHHHHHHHHHSSSCC----EEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCe----EEEe
Confidence 588999999988888999999999999999999998875 7899999999999999999999999988 9999
Q ss_pred cccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCChh
Q 005837 595 TDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670 (675)
Q Consensus 595 T~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~~ 670 (675)
|+++++|+|+|++++||+|++|++...|+||+||+|| .|+.|.|++|+++.+...++.+.+........-.+|..
T Consensus 88 T~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR-~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 162 (212)
T 3eaq_A 88 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR-AGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTP 162 (212)
T ss_dssp CTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCC-CC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCH
T ss_pred cChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCC-CCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCH
Confidence 9999999999999999999999999999999999999 78999999999999999999998887766654444443
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=206.11 Aligned_cols=178 Identities=25% Similarity=0.402 Sum_probs=134.6
Q ss_pred HhCCCCeEEeCCCccccCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHH
Q 005837 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551 (675)
Q Consensus 472 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~ 551 (675)
.++.++..+...........+.+.+..+... .|...|.+++.... +++||||+++..++.++..|+.
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~------------~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~ 76 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEE------------AKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLL 76 (191)
T ss_dssp ------------------CCSEEEEEECCGG------------GHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChH------------HHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHH
Confidence 3444444444434444556777777766432 58888888887654 5899999999999999999988
Q ss_pred hcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhccccc
Q 005837 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR 631 (675)
Q Consensus 552 ~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR 631 (675)
.+ +.+..+||+|++.+|.++++.|++|+.+ |||||+++++|+|+|++++||+||+|+++..|+||+||+||
T Consensus 77 ~g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~----vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR 147 (191)
T 2p6n_A 77 KG-----VEAVAIHGGKDQEERTKAIEAFREGKKD----VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGC 147 (191)
T ss_dssp HT-----CCEEEECTTSCHHHHHHHHHHHHHTSCS----EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC
T ss_pred cC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCE----EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCcccc
Confidence 75 7899999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEEeCc-cHHHHHHHHHHhcCCCCCCCCChhhhcc
Q 005837 632 GAGGTGKAFIFVVGK-QVSLAQRIMERNRKGHPLHDVPSAFELM 674 (675)
Q Consensus 632 ~~g~~g~~i~~~~~~-d~~~~~~l~~~~~~~~~~~~l~~~~e~m 674 (675)
.|+.|.|++|+.+. +..+++.|.+.+.... ..+|..+..|
T Consensus 148 -~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~--~~~p~~l~~~ 188 (191)
T 2p6n_A 148 -SGNTGIATTFINKACDESVLMDLKALLLEAK--QKVPPVLQVL 188 (191)
T ss_dssp ----CCEEEEEECTTSCHHHHHHHHHHHHHTT--CCCCHHHHST
T ss_pred -CCCCcEEEEEEcCchhHHHHHHHHHHHHHcc--CcCCHHHHhh
Confidence 78999999999976 6777777766554333 5567665543
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=203.54 Aligned_cols=153 Identities=25% Similarity=0.411 Sum_probs=134.1
Q ss_pred CCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
..++.++++.+.... .|...|..++.....+++||||+++.+++.++..|...+ +.+..+||+|
T Consensus 5 ~~~i~q~~~~~~~~~-----------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~g~~ 68 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRK-----------DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG-----HQVSLLSGEL 68 (175)
T ss_dssp BCCEEEEEEECSSHH-----------HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT-----CCEEEECSSC
T ss_pred cCCceEEEEEcCChH-----------hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCC
Confidence 356777777665431 488889999988888899999999999999999998765 7899999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCC------CCHHHHHHHhcccccCCCCccEEEEE
Q 005837 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP------RDPSEYVRRVGRTARGAGGTGKAFIF 642 (675)
Q Consensus 569 ~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~~g~~g~~i~~ 642 (675)
++.+|..+++.|++|..+ |||||+++++|+|+|++++||+||+| .+..+|+||+||+|| .|..|.|++|
T Consensus 69 ~~~~R~~~~~~f~~g~~~----vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR-~g~~g~~~~~ 143 (175)
T 2rb4_A 69 TVEQRASIIQRFRDGKEK----VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGR-FGKKGLAFNM 143 (175)
T ss_dssp CHHHHHHHHHHHHTTSCS----EEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCe----EEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhccccc-CCCCceEEEE
Confidence 999999999999999888 99999999999999999999999999 999999999999999 7899999999
Q ss_pred EeCccHHHHHHHHHHhcCCC
Q 005837 643 VVGKQVSLAQRIMERNRKGH 662 (675)
Q Consensus 643 ~~~~d~~~~~~l~~~~~~~~ 662 (675)
+.+.+...++++.+......
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 144 IEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp ECGGGHHHHHHHHHHHTCCC
T ss_pred EccchHHHHHHHHHHhcCcc
Confidence 99999999999988776544
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=8.3e-24 Score=202.74 Aligned_cols=158 Identities=23% Similarity=0.507 Sum_probs=136.0
Q ss_pred CCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCC
Q 005837 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569 (675)
Q Consensus 490 ~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~ 569 (675)
..+.++++.+... .|...|.++++....+++||||+++.+++.+++.|...+ +.+..+||+|+
T Consensus 4 ~~i~q~~~~~~~~------------~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~hg~~~ 66 (172)
T 1t5i_A 4 HGLQQYYVKLKDN------------EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN-----FPAIAIHRGMP 66 (172)
T ss_dssp -CCEEEEEECCGG------------GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTSC
T ss_pred CCeEEEEEECChH------------HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC-----CCEEEEECCCC
Confidence 4566777765543 588899999998888899999999999999999998865 78999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCc-cH
Q 005837 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK-QV 648 (675)
Q Consensus 570 ~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~-d~ 648 (675)
+.+|..+++.|++|..+ |||||+++++|+|+|++++||+||+|+++..|+||+||+|| .|+.|.|++|+.+. +.
T Consensus 67 ~~~r~~~~~~f~~g~~~----vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R-~g~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 67 QEERLSRYQQFKDFQRR----ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR-FGTKGLAITFVSDENDA 141 (172)
T ss_dssp HHHHHHHHHHHHTTSCS----EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTG-GGCCCEEEEEECSHHHH
T ss_pred HHHHHHHHHHHHCCCCc----EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhccccc-CCCCcEEEEEEcChhHH
Confidence 99999999999999988 99999999999999999999999999999999999999999 78999999999876 46
Q ss_pred HHHHHHHHHhcCCCCCCCCChhh
Q 005837 649 SLAQRIMERNRKGHPLHDVPSAF 671 (675)
Q Consensus 649 ~~~~~l~~~~~~~~~~~~l~~~~ 671 (675)
.+++.+.+.... .+.++|..+
T Consensus 142 ~~~~~l~~~~~~--~~~~~~~~~ 162 (172)
T 1t5i_A 142 KILNDVQDRFEV--NISELPDEI 162 (172)
T ss_dssp HHHHHHHHHHCC--CEEECC---
T ss_pred HHHHHHHHHHhc--chhhCChhh
Confidence 677777776653 445666543
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=8.2e-24 Score=201.31 Aligned_cols=144 Identities=28% Similarity=0.491 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEc
Q 005837 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595 (675)
Q Consensus 516 k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT 595 (675)
|...|.++++....+++||||+++++++.++..|...+ +.+..+||+|++.+|.++++.|++|..+ |||||
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~----vlv~T 87 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK-----FTVSAIYSDLPQQERDTIMKEFRSGSSR----ILIST 87 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHTTSCS----EEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHcCCCE----EEEEc
Confidence 88899999998888899999999999999999998865 7899999999999999999999999988 99999
Q ss_pred ccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCChhh
Q 005837 596 DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671 (675)
Q Consensus 596 ~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~~~ 671 (675)
+++++|+|+|++++||+||+|++..+|+||+||+|| .|+.|.|++|+.+.+...++.+.+..... ++.+|..+
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 160 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR-FGRKGVAINFVTNEDVGAMRELEKFYSTQ--IEELPSDI 160 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCC--CEECCSCC
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc-CCCCceEEEEEcchHHHHHHHHHHHHccC--ccccCccH
Confidence 999999999999999999999999999999999999 78999999999999999999988876543 45666543
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=204.51 Aligned_cols=162 Identities=30% Similarity=0.468 Sum_probs=127.7
Q ss_pred cCCCceEEEEecCCCCCCCCchhhhhhhHHHHHHHHHHhC-CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecC
Q 005837 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566 (675)
Q Consensus 488 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg 566 (675)
...++.+.++.+... .|...|.+++... +..++||||+++..++.++..|+..+ +.+..+||
T Consensus 16 ~~~~i~q~~~~v~~~------------~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg 78 (185)
T 2jgn_A 16 TSENITQKVVWVEES------------DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-----YACTSIHG 78 (185)
T ss_dssp CCTTEEEEEEECCGG------------GHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT-----CCEEEEC-
T ss_pred CCCCceEEEEEeCcH------------HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC-----CceEEEeC
Confidence 345677777766533 5888899988876 57889999999999999999998865 78999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCc
Q 005837 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646 (675)
Q Consensus 567 ~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~ 646 (675)
+|++.+|..+++.|++|+.+ |||||+++++|+|+|++++||+||+|+++.+|+||+||+|| .|+.|.|++|+.+.
T Consensus 79 ~~~~~~r~~~~~~f~~g~~~----vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R-~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 79 DRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR-VGNLGLATSFFNER 153 (185)
T ss_dssp -------CHHHHHHHHTSSS----EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCC-TTSCEEEEEEECGG
T ss_pred CCCHHHHHHHHHHHHcCCCe----EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCC-CCCCcEEEEEEchh
Confidence 99999999999999999988 99999999999999999999999999999999999999999 78999999999999
Q ss_pred cHHHHHHHHHHhcCCCCCCCCChhhhc
Q 005837 647 QVSLAQRIMERNRKGHPLHDVPSAFEL 673 (675)
Q Consensus 647 d~~~~~~l~~~~~~~~~~~~l~~~~e~ 673 (675)
+...++.+.+...... ..+|..+..
T Consensus 154 ~~~~~~~l~~~l~~~~--~~~~~~l~~ 178 (185)
T 2jgn_A 154 NINITKDLLDLLVEAK--QEVPSWLEN 178 (185)
T ss_dssp GGGGHHHHHHHHHHTT--CCCCHHHHH
T ss_pred hHHHHHHHHHHHHhcc--CCCCHHHHH
Confidence 9988888887665433 566765443
No 83
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=2.4e-22 Score=231.45 Aligned_cols=116 Identities=18% Similarity=0.327 Sum_probs=106.3
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccccccCCCCCc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~~GiDip~v 607 (675)
.+.++||||+++..++.+++.|.+.+ +.+..+||+|++.+|.++++.|++|... |||||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-----i~~~~lh~~~~~~~R~~~l~~f~~g~~~----VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-----IKVNYLHSEIKTLERIEIIRDLRLGKYD----VLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHHTSCS----EEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-----CCeEEEeCCCCHHHHHHHHHHHhcCCeE----EEEecchhhCCcccCCC
Confidence 46799999999999999999999875 7888999999999999999999999988 99999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHH
Q 005837 608 DHVVLFDF-----PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654 (675)
Q Consensus 608 ~~VI~~d~-----p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l 654 (675)
++||+++. |.+..+|+||+||||| . ..|.|++|+.+.+..+.+.+
T Consensus 515 ~lVi~~d~d~~G~p~s~~~~iQr~GRagR-~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 515 SLVAILDADKEGFLRSERSLIQTIGRAAR-N-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp EEEEETTTTCCTTTTSHHHHHHHHHTTTT-S-TTCEEEEECSSCCHHHHHHH
T ss_pred CEEEEeCcccccCCCCHHHHHHHhCcccC-C-CCCEEEEEEeCCCHHHHHHH
Confidence 99999997 9999999999999999 4 78999999998776555444
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4.3e-23 Score=214.70 Aligned_cols=148 Identities=24% Similarity=0.360 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE
Q 005837 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC 594 (675)
Q Consensus 515 ~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa 594 (675)
.|...+.+++.....+++||||+++++++.++..|...+ +.+..+||+|++.+|..+++.|++|..+ ||||
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-----~~~~~lhg~l~~~~r~~~~~~f~~g~~~----vLVa 84 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDMSQGERERVMGAFRQGEVR----VLVA 84 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT-----CCEEEECSCCCTHHHHHHHHHHHHTSCC----EEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC-----CCEEEEeCCCCHHHHHHHHHHhhcCCce----EEEE
Confidence 588999999988778999999999999999999998765 7899999999999999999999999988 9999
Q ss_pred cccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCCCCCCChhhh
Q 005837 595 TDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672 (675)
Q Consensus 595 T~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~~~~l~~~~e 672 (675)
|+++++|+|+|++++||+|++|++...|+||+||+|| .|+.|.|++|+++.+...++.+.+........-..|..-+
T Consensus 85 T~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR-~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~e 161 (300)
T 3i32_A 85 TDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR-AGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 161 (300)
T ss_dssp CSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHH
T ss_pred echhhcCccccceeEEEEcCCCCCHHHHHHHccCcCc-CCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHH
Confidence 9999999999999999999999999999999999999 7889999999999999999999988877665555554433
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=197.75 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=123.8
Q ss_pred CCCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH-HHHH
Q 005837 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ-VLSN 364 (675)
Q Consensus 286 ~g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q-~~~~ 364 (675)
.....|+++|.++++.+++++++++++|||+|||++|++++++.+...... ..++++||++|+++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA------SEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT------TCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc------cCCCcEEEEECHHHHHHHHHHHH
Confidence 345589999999999999999999999999999999999999887654311 235689999999999999 7788
Q ss_pred HHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcc------cccccceEEEEcCcccccCCccH
Q 005837 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI------LQLINLRCAILDEVDILFNDEDF 438 (675)
Q Consensus 365 l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~------~~l~~i~~IVIDEaH~l~~~~~~ 438 (675)
+.++... .+.+..+.|+.........+...++|+|+||++|...+.... ..+..+++|||||||++.....+
T Consensus 103 ~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 103 FQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp HHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 8887653 567788888776555544445568999999999998887632 55788999999999999843344
Q ss_pred HHHHHHHHhhC-------------CCCccEEEEecC
Q 005837 439 EVALQSLISSS-------------PVTAQYLFVTAT 461 (675)
Q Consensus 439 ~~~l~~il~~~-------------~~~~qiI~lSAT 461 (675)
...+..++... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 55444443322 257899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.78 E-value=1.3e-23 Score=201.04 Aligned_cols=139 Identities=31% Similarity=0.471 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEE
Q 005837 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC 594 (675)
Q Consensus 515 ~k~~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVa 594 (675)
.|...|.++++....+++||||+++.+++.+++.|+..+ +.+..+||+|++.+|..+++.|++|..+ ||||
T Consensus 16 ~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-----~~~~~~~g~~~~~~r~~~~~~f~~g~~~----vLva 86 (170)
T 2yjt_D 16 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG-----INNCYLEGEMVQGKRNEAIKRLTEGRVN----VLVA 86 (170)
Confidence 477778888877777899999999999999999998765 7889999999999999999999999888 9999
Q ss_pred cccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEEEEEEeCccHHHHHHHHHHhcCCCC
Q 005837 595 TDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663 (675)
Q Consensus 595 T~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~i~~~~~~d~~~~~~l~~~~~~~~~ 663 (675)
|+++++|+|+|++++||+|++|++...|+||+||+|| .|+.|.|++|+...+...++.+.+.......
T Consensus 87 T~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 87 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTAR-AGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 154 (170)
Confidence 9999999999999999999999999999999999999 7899999999999998888888776554443
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.84 E-value=5.6e-20 Score=207.43 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEE--Ec
Q 005837 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV--CT 595 (675)
Q Consensus 518 ~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLV--aT 595 (675)
..+.+++.. ..+++|||++|...++.+++.|.. .. ...++.. .+|.++++.|+++. . ||+ +|
T Consensus 374 ~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-------~~-~~~q~~~--~~~~~~l~~f~~~~-~----il~~V~~ 437 (540)
T 2vl7_A 374 ILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-------IP-VIEENKK--TRHEEVLELMKTGK-Y----LVMLVMR 437 (540)
T ss_dssp HHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-------SC-EEESTTT--CCHHHHHHHHHTSC-C----EEEEEC-
T ss_pred HHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-------Cc-eEecCCC--CcHHHHHHHHhcCC-e----EEEEEec
Confidence 344444444 457899999999999999887753 22 3346553 46889999998853 3 666 88
Q ss_pred ccccccCCCCC----cCEEEEcCCCCC------------------------------HHHHHHHhcccccCCCCccEEEE
Q 005837 596 DRASRGIDFAG----VDHVVLFDFPRD------------------------------PSEYVRRVGRTARGAGGTGKAFI 641 (675)
Q Consensus 596 ~~~~~GiDip~----v~~VI~~d~p~s------------------------------~~~y~Qr~GRagR~~g~~g~~i~ 641 (675)
..+.+|||+|+ +++||++++|.. +..+.|.+||+.|..+..|.+++
T Consensus 438 ~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 438 AKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp --------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred CceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99999999998 899999998841 12346999999995456666554
Q ss_pred E
Q 005837 642 F 642 (675)
Q Consensus 642 ~ 642 (675)
+
T Consensus 518 l 518 (540)
T 2vl7_A 518 C 518 (540)
T ss_dssp E
T ss_pred E
Confidence 4
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=183.04 Aligned_cols=172 Identities=15% Similarity=0.191 Sum_probs=127.8
Q ss_pred CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHH
Q 005837 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (675)
Q Consensus 287 g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~ 366 (675)
....++++|.++++.+.+|++++++||||||||+++.++++..+.... ...+.++++++|+++|+.|+.+.+.
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccchHHHHHHHHHHH
Confidence 344578999999999999999999999999999999888887765432 1234589999999999999999887
Q ss_pred HhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHH-HHHHHH
Q 005837 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE-VALQSL 445 (675)
Q Consensus 367 ~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~-~~l~~i 445 (675)
+.........+......... .....++|+|+||++|.+.+.. .+.++++|||||||.+.-+.+|. ..++.+
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred HHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 76543333333332221110 0113578999999999988876 47899999999999862255666 466667
Q ss_pred HhhCCCCccEEEEecCCCHHHHHHHHHhCCCC
Q 005837 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (675)
Q Consensus 446 l~~~~~~~qiI~lSAT~~~~v~~~l~~~~~~~ 477 (675)
+... ++.|++++|||++.+. +.+++.+.
T Consensus 203 ~~~~-~~~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 203 VQAY-PEVRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHC-TTSEEEEEECSSCCHH---HHHHTTSC
T ss_pred HhhC-CCCeEEEEecCCCHHH---HHHHcCCC
Confidence 6665 4789999999999886 44556544
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.80 E-value=1.4e-17 Score=188.30 Aligned_cols=128 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred CChHHHHHHhhh----hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~----il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
.+++.|.+++.. +..++++++.+|||+|||++|++|++. .+++++|++||++|+.|+.+.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 688999987765 446899999999999999999999996 1459999999999999999999
Q ss_pred HHhhcCCCCceEEEEECCcch---------------------------------HHHH------------------HHhh
Q 005837 366 RSLSKCGVPFRSMVVTGGFRQ---------------------------------KTQL------------------ENLQ 394 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg~~~---------------------------------~~~~------------------~~l~ 394 (675)
..+... .++++..+.|.... .... ....
T Consensus 68 ~~l~~~-~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREK-RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCS-SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhh-cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 887654 35777777664321 0111 1223
Q ss_pred CCCcEEEeCHHHHHHHHHhccccc-ccceEEEEcCccccc
Q 005837 395 EGVDVLIATPGRFMFLIKEGILQL-INLRCAILDEVDILF 433 (675)
Q Consensus 395 ~~~~IlV~Tp~~L~~~l~~~~~~l-~~i~~IVIDEaH~l~ 433 (675)
..++|||+|+..|++...+..+.+ ....++||||||.+.
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~ 186 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLD 186 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchH
Confidence 468999999999986654433333 467899999999875
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=1.9e-19 Score=186.26 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=122.2
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.|+++|.++++.++.+.+.++++|||+|||+++++++...+.. ...++||++|+++|+.|+.+.+.+++
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999999988889999999999999998887776643 13489999999999999999999986
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhC
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~ 449 (675)
.. ....+..+.++..... ......+|+|+||+.+... ....+..+++|||||||++. ...+..++..+
T Consensus 182 ~~-~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~-----~~~~~~il~~~ 249 (282)
T 1rif_A 182 LF-SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT-----GKSISSIISGL 249 (282)
T ss_dssp SC-CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC-----HHHHHHHTTTC
T ss_pred cc-ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC-----cccHHHHHHHh
Confidence 53 3456777777765432 2224689999999977432 22346789999999999997 24677788888
Q ss_pred CCCccEEEEecCCCHH
Q 005837 450 PVTAQYLFVTATLPVE 465 (675)
Q Consensus 450 ~~~~qiI~lSAT~~~~ 465 (675)
....+++++|||++..
T Consensus 250 ~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCCEEEEECSSCCTT
T ss_pred hcCCeEEEEeCCCCCc
Confidence 7789999999999754
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.73 E-value=2.4e-16 Score=179.95 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=66.3
Q ss_pred CChHHHHHHhhh----hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (675)
Q Consensus 290 ~~~~iQ~~~i~~----il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l 365 (675)
+|++.|.+.+.. +.+++++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----------CCeEEEECCCHHHHHHHHHHH
Confidence 578999888864 45789999999999999999999999988653 458999999999999999999
Q ss_pred HHhhcCCCCceEEEEECC
Q 005837 366 RSLSKCGVPFRSMVVTGG 383 (675)
Q Consensus 366 ~~l~~~~~~~~v~~l~gg 383 (675)
..+... ..+++..+.|.
T Consensus 72 ~~l~~~-~~~~~~~l~gr 88 (620)
T 4a15_A 72 RSLSST-MKIRAIPMQGR 88 (620)
T ss_dssp HHHHHH-SCCCEEECCCH
T ss_pred HHHhhc-cCeEEEEEECC
Confidence 888653 25666655554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.72 E-value=6.8e-17 Score=162.75 Aligned_cols=139 Identities=21% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..++++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 37899999999999999899999999999999988776531 347999999999999999998874
Q ss_pred hcCCCCce-EEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 369 SKCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 369 ~~~~~~~~-v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
++. +..+.|+... ..+|+|+|++.+...... ....+++|||||+|++. ...+. .++.
T Consensus 157 -----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~-~~~~~----~i~~ 214 (237)
T 2fz4_A 157 -----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLP-AESYV----QIAQ 214 (237)
T ss_dssp -----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCC-TTTHH----HHHH
T ss_pred -----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCC-ChHHH----HHHH
Confidence 345 6667766542 468999999998765543 12458999999999998 44444 3444
Q ss_pred hCCCCccEEEEecCCCHH
Q 005837 448 SSPVTAQYLFVTATLPVE 465 (675)
Q Consensus 448 ~~~~~~qiI~lSAT~~~~ 465 (675)
.+. ..+++++|||+...
T Consensus 215 ~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 215 MSI-APFRLGLTATFERE 231 (237)
T ss_dssp TCC-CSEEEEEEESCC--
T ss_pred hcc-CCEEEEEecCCCCC
Confidence 443 67889999999755
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.66 E-value=1.8e-16 Score=162.60 Aligned_cols=123 Identities=18% Similarity=0.266 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHh-cccCCCeeEEEecCCCCHHHHHHHHHHHhcCC-CCCCce
Q 005837 515 NKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRF-DRKETRVRVLPFHAALDQETRLANMKEFTTSR-SKEARL 590 (675)
Q Consensus 515 ~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~-~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~-~~~~~~ 590 (675)
.|...+.+++... .+.++||||++...++.+...|... + +.+..+||++++.+|.++++.|+++. .. .
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g-----~~~~~l~G~~~~~~R~~~i~~F~~~~~~~---v 167 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN-----TEVPFLYGELSKKERDDIISKFQNNPSVK---F 167 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC-----SCCCEECTTSCHHHHHHHHHHHHHCTTCC---E
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC-----CcEEEEECCCCHHHHHHHHHHhcCCCCCC---E
Confidence 5788888887765 6789999999999999999999874 4 67888999999999999999999983 32 4
Q ss_pred EEEEcccccccCCCCCcCEEEEcCCCCCHHHHHHHhcccccCCCCccEE--EEEEeCc
Q 005837 591 FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA--FIFVVGK 646 (675)
Q Consensus 591 VLVaT~~~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~~g~~g~~--i~~~~~~ 646 (675)
+|++|+++++|+|++++++||+||+|+++..|.|++||++| .|+.+.+ |.|+...
T Consensus 168 ~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R-~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 168 IVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR-IGQTRNVIVHKLISVG 224 (271)
T ss_dssp EEEECCTTCCCCCCTTCSEEEECSCCSCTTTC---------------CCEEEEEEETT
T ss_pred EEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccc-cCCCCceEEEEEeeCC
Confidence 78999999999999999999999999999999999999999 6766655 4555544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.52 E-value=9.8e-08 Score=108.74 Aligned_cols=145 Identities=19% Similarity=0.285 Sum_probs=87.5
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCch--HHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKT--LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKT--l~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++|.++++.++.++.+++.|++|+||| ++++++++..+.. ..+.++++++||..++.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----------SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----------cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 4566666543211 235689999999999999887776543
Q ss_pred cCCCCceEEEEECCcc-hHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 370 KCGVPFRSMVVTGGFR-QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~-~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
.. .++..... .... .... + ..++-.+|+.. . +.........+++||||||+++. ...+..++..
T Consensus 221 ~~-l~l~~~~~-~~~~~~~~T---i---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~-----~~~~~~Ll~~ 285 (608)
T 1w36_D 221 RQ-LPLTDEQK-KRIPEDAST---L---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID-----LPMMSRLIDA 285 (608)
T ss_dssp HH-SSCCSCCC-CSCSCCCBT---T---TSCC-------------CTTSCCSCSEEEECSGGGCB-----HHHHHHHHHT
T ss_pred hc-CCCCHHHH-hccchhhhh---h---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC-----HHHHHHHHHh
Confidence 21 11110000 0000 0000 0 11222233221 1 11111122368899999999553 4567788888
Q ss_pred CCCCccEEEEecC
Q 005837 449 SPVTAQYLFVTAT 461 (675)
Q Consensus 449 ~~~~~qiI~lSAT 461 (675)
++...|+|++.-.
T Consensus 286 l~~~~~liLvGD~ 298 (608)
T 1w36_D 286 LPDHARVIFLGDR 298 (608)
T ss_dssp CCTTCEEEEEECT
T ss_pred CCCCCEEEEEcch
Confidence 8888899888643
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.80 E-value=5.6e-05 Score=85.20 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=78.8
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++.|.+++..++.+..+++.|+.|+|||.+.. .++..+.. .+.++++++||...+..+.+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~~~-- 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES-----------LGLEVGLCAPTGKAARRLGEVTGR-- 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHTS--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhhcc--
Confidence 4678999999999999999999999999998632 23333332 245799999999888766543310
Q ss_pred cCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHH----HHhcccccccceEEEEcCcccccCCccHHHHHHHH
Q 005837 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL----IKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (675)
Q Consensus 370 ~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~----l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~i 445 (675)
. . .|..+++.. +.........+++|||||++++. ...+..+
T Consensus 255 ----~--a------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~L 299 (574)
T 3e1s_A 255 ----T--A------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSL 299 (574)
T ss_dssp ----C--E------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC-----HHHHHHH
T ss_pred ----c--H------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC-----HHHHHHH
Confidence 0 0 011111000 00111223467899999999885 3466677
Q ss_pred HhhCCCCccEEEEe
Q 005837 446 ISSSPVTAQYLFVT 459 (675)
Q Consensus 446 l~~~~~~~qiI~lS 459 (675)
+..++...+++++.
T Consensus 300 l~~~~~~~~lilvG 313 (574)
T 3e1s_A 300 LAAVPPGARVLLVG 313 (574)
T ss_dssp HTTSCTTCEEEEEE
T ss_pred HHhCcCCCEEEEEe
Confidence 77777777777764
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.79 E-value=6.3e-05 Score=82.59 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHCCCCCChHHHHHHhhhhhcC-----CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHH
Q 005837 284 KRQNFLRPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (675)
Q Consensus 284 ~~~g~~~~~~iQ~~~i~~il~g-----~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La 358 (675)
..+.|..+++-|.+++..++.. ..+++.|+.|+|||.+. ..++..+.... ...+++++||...+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~----------~~~il~~a~T~~Aa 87 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG----------ETGIILAAPTHAAK 87 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT----------CCCEEEEESSHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC----------CceEEEecCcHHHH
Confidence 3455677889999999877542 38999999999999754 34444554421 23689999999888
Q ss_pred HHHHHHH
Q 005837 359 SQVLSNC 365 (675)
Q Consensus 359 ~Q~~~~l 365 (675)
..+...+
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7665544
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.75 E-value=4.1e-05 Score=87.85 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=52.8
Q ss_pred CChHHHHHHhhhhhcCC-CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~-dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.+++-|.+|+..+++.+ -.||+||.|+|||.+..-.+.+.+.. +.++|+++||-..|.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~------------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ------------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC------------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 46688999999988765 47889999999999765444444422 458999999999999998888654
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.73 E-value=0.00027 Score=80.62 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=53.9
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++.|.+++..++.+.-++|+||+|+|||.+..- ++..+.. ..+.++|+++||...+.++...+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 356788999999988888899999999999987543 3333332 12458999999999999998887764
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00029 Score=82.39 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=54.8
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++.|.+|+..++.+.-++|.||.|+|||.+..-. +.++.... +.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~~----------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKIH----------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHHH----------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999988777899999999999875443 33333211 448999999999999999988775
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.51 E-value=0.00051 Score=80.25 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=54.3
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++.|.+++..++.+.-.+|.||+|+|||.+..- ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~----------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT----------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc----------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999998888889999999999987533 33343321 2458999999999999988887764
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.45 E-value=0.004 Score=71.07 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=54.0
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+.... ....++|++++|+.++.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 3578999999984 3567999999999999976554544443311 12337999999999999999999886
Q ss_pred h
Q 005837 369 S 369 (675)
Q Consensus 369 ~ 369 (675)
.
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 4
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.17 E-value=0.0017 Score=66.87 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHhC--CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEE
Q 005837 515 NKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592 (675)
Q Consensus 515 ~k~~~l~~ll~~~--~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VL 592 (675)
.|+..|.+++... .+.+++||++..+..+-+.++|... ++.+..+.|.....++.. .+. ++.+.
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~-----~~~y~RlDG~~~~~~~k~-----~~~----~~~i~ 174 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN-----KVHIKRYDGHSIKSAAAA-----NDF----SCTVH 174 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS-----SCEEEESSSCCC------------CC----SEEEE
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC-----CCceEeCCCCchhhhhhc-----ccC----CceEE
Confidence 5777777777543 4679999999998888888888653 388999999855432211 122 23355
Q ss_pred EEcccccccCC-----CCCcCEEEEcCCCCCHHHH-HHHhcccccC-C--CCccEEEEEEeCccHHHH
Q 005837 593 VCTDRASRGID-----FAGVDHVVLFDFPRDPSEY-VRRVGRTARG-A--GGTGKAFIFVVGKQVSLA 651 (675)
Q Consensus 593 VaT~~~~~GiD-----ip~v~~VI~~d~p~s~~~y-~Qr~GRagR~-~--g~~g~~i~~~~~~d~~~~ 651 (675)
+.|.+.+-|+| +..++.||.||..++++.- +|.+-|+.|. . +++-.+|.|++....+..
T Consensus 175 Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 175 LFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp EEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred EEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 55777777776 6789999999999999875 8999998882 1 346667888876654443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.82 E-value=0.006 Score=64.86 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=54.6
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++..+..+.+.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999999765555543322 235589999999999988887777664
Q ss_pred c
Q 005837 370 K 370 (675)
Q Consensus 370 ~ 370 (675)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.36 E-value=0.014 Score=54.76 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.++.+++.||+|+|||..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46889999999999998543
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.33 E-value=0.018 Score=65.07 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=55.3
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.++++|...+..+...+.+++.++-|+|||.+....++..+.. ..+..++++.|+...+..+.+.++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5789999999887556779999999999999765544444432 124589999999999999888887765
Q ss_pred c
Q 005837 370 K 370 (675)
Q Consensus 370 ~ 370 (675)
.
T Consensus 233 ~ 233 (592)
T 3cpe_A 233 E 233 (592)
T ss_dssp T
T ss_pred H
Confidence 4
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.26 E-value=0.0074 Score=65.03 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
+-.++.|+.|+|||....-. + . ....+|++||++++.++.+.+.+.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~-~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~-------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----V-N------------FEEDLILVPGRQAAEMIRRRANASGII-------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----C-C------------TTTCEEEESCHHHHHHHHHHHTTTSCC--------------
T ss_pred cEEEEEcCCCCCHHHHHHHH----h-c------------cCCeEEEeCCHHHHHHHHHHhhhcCcc--------------
Confidence 34678999999999854221 1 1 124699999999999888776532110
Q ss_pred hHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 386 ~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
.....-+.|.+.++ ++......-..+++||||+-++. .+ .+..++...+. .+++++.-
T Consensus 211 ---------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~~--~~---~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 211 ---------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLMLH--TG---CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ---------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGSC--HH---HHHHHHHHTTC-SEEEEEEC
T ss_pred ---------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccCC--HH---HHHHHHHhCCC-CEEEEecC
Confidence 01123367777653 22222222347899999998664 22 23333344433 55555553
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.91 E-value=0.007 Score=59.32 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=59.3
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
|.-+++.|++|+|||+..+-.+.+.. . .+.+++++.|...- +-...+... . |-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~-~-----------~g~kVli~~~~~d~-----r~~~~i~sr-l--------G~- 64 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE-Y-----------ADVKYLVFKPKIDT-----RSIRNIQSR-T--------GT- 64 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-H-----------TTCCEEEEEECCCG-----GGCSSCCCC-C--------CC-
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH-h-----------cCCEEEEEEeccCc-----hHHHHHHHh-c--------CC-
Confidence 45678899999999987654433332 2 24478888875420 000011100 0 10
Q ss_pred chHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
. ...+-+.+.+.+...+... ..-..+++|||||++.+. ......+..+.. . ..++|+..
T Consensus 65 ~----------~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~-~--gi~Vil~G 123 (223)
T 2b8t_A 65 S----------LPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD--DRICEVANILAE-N--GFVVIISG 123 (223)
T ss_dssp S----------SCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC--THHHHHHHHHHH-T--TCEEEEEC
T ss_pred C----------ccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc--HHHHHHHHHHHh-C--CCeEEEEe
Confidence 0 0123345566666655542 223458899999999875 233344444433 2 45555443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.84 E-value=0.0037 Score=59.43 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
++-.++.|++|+|||...+-.+.... . .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~-----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-L-----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-H-----------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-H-----------CCCeEEEEeecc
Confidence 55678999999999997544333222 1 134788998873
No 109
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.72 E-value=0.082 Score=54.52 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+++.||+|+|||..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4689999999999998643
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.16 Score=52.33 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=25.5
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
...-+|++||+|.+. +......+-.+........-+|++++|+
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 345689999999998 4433332222222223345667778876
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.20 E-value=0.018 Score=56.18 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998543
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.01 E-value=0.016 Score=56.14 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
|+=.++.|++|+|||+..+--+.+... .+-+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~------------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF------------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH------------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH------------CCCEEEEEEecc
Confidence 344678999999999876554444332 245899999975
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.93 E-value=0.031 Score=64.12 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=53.9
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~ 369 (675)
.+++-|.+++... +..++|.|+.|||||.+..--+...+.... ....++|+|+.|+.++.++.+++.++.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC--------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4678999999763 568999999999999976555555554421 123479999999999999999988764
No 114
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.86 E-value=0.22 Score=47.32 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=26.7
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
..-.+|||||+|.+. ......+..++........+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALT--ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcC--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 456799999999986 3344556666666655666665543
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.78 E-value=0.035 Score=52.96 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
|+=.++.|++|+|||+..+-.+.+.. . .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-I-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-H-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-H-----------CCCEEEEEEecc
Confidence 45578899999999987654433332 2 245899999873
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.60 E-value=0.049 Score=63.03 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 289 ~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+++-|.+++... ...++|.|..|||||.+..--+...+.+.. .....+|+|+.|+.++.++.+++.++
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH--------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 35789999999763 468999999999999976554544444321 12347999999999999999988876
Q ss_pred h
Q 005837 369 S 369 (675)
Q Consensus 369 ~ 369 (675)
.
T Consensus 80 l 80 (724)
T 1pjr_A 80 L 80 (724)
T ss_dssp H
T ss_pred h
Confidence 3
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.54 E-value=0.049 Score=61.59 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred CChHHHHHHhhhhhc--CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 290 RPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~--g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+- .+. ..++|.+|+.+-+....+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~--------------~~~~vtAP~~~a~~~l~~~--- 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA--------------GRAIVTAPAKASTDVLAQF--- 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS--------------SCEEEECSSCCSCHHHHHH---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH--------------hCcEEECCCHHHHHHHHHH---
Confidence 467889999988776 33478899999999965443332 221 1469999998766643332
Q ss_pred hhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccCCccHHHHHHHHHh
Q 005837 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (675)
Q Consensus 368 l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~~~~~~~~l~~il~ 447 (675)
... .|-+..|+.+. . .....+++|||||=.+. .+.++.++.
T Consensus 237 -~~~--------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp-----~pll~~ll~ 277 (671)
T 2zpa_A 237 -AGE--------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP-----APLLHQLVS 277 (671)
T ss_dssp -HGG--------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC-----HHHHHHHHT
T ss_pred -hhC--------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC-----HHHHHHHHh
Confidence 211 13445676532 1 23458899999998776 567777776
Q ss_pred hCCCCccEEEEecCC
Q 005837 448 SSPVTAQYLFVTATL 462 (675)
Q Consensus 448 ~~~~~~qiI~lSAT~ 462 (675)
..+ .++||.|.
T Consensus 278 ~~~----~v~~~tTv 288 (671)
T 2zpa_A 278 RFP----RTLLTTTV 288 (671)
T ss_dssp TSS----EEEEEEEB
T ss_pred hCC----eEEEEecC
Confidence 433 37777776
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.23 E-value=0.076 Score=51.94 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
|+=.++.|++|+|||...+--+.+.. ..+-+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~------------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH------------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCeEEEEeecC
Confidence 45578899999999987655444332 2355899998864
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.18 E-value=0.047 Score=52.83 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
|.-.++.|++|+|||...+--+ ..+.. .+.+++|+.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~-----------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY-----------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH-----------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH-----------cCCceEEEEecc
Confidence 4557889999999998654433 33322 245789999965
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.15 E-value=0.2 Score=53.90 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=37.1
Q ss_pred cccceEEEEcCccccc--CCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHH
Q 005837 418 LINLRCAILDEVDILF--NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~--~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~ 468 (675)
...++++|||++-++. .+..+...+..+.....+..-+++++|+...+..+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 3568899999998765 45667777888877776677778888886544433
No 121
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.10 E-value=0.087 Score=54.79 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=23.5
Q ss_pred hHHHHHHhhhhh----cCC---CEEEEccCCCCchHHHHH
Q 005837 292 SQIQAMAFPPVV----EGK---SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 292 ~~iQ~~~i~~il----~g~---dvii~apTGsGKTl~~ll 324 (675)
+|||.+++..+. +++ ..++.||.|+|||..+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 467777765543 342 389999999999987644
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.02 E-value=0.26 Score=44.25 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=24.1
Q ss_pred eEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecC
Q 005837 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 422 ~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT 461 (675)
..++|||+|.+. ......+..++.....+.++|+.|..
T Consensus 78 g~l~ldei~~l~--~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLT--REQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSC--HHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCC--HHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 369999999986 33344445555555556676665544
No 123
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.77 E-value=0.056 Score=51.50 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCc
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Pt 354 (675)
++=.++.|++|+|||.-.+-. +..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~-i~n~~~-----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRR-VRRFQI-----------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH-----------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHHH-----------cCCeEEEEccc
Confidence 455788999999999643333 333222 13478999886
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.73 E-value=0.48 Score=51.20 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
...+++.||+|+|||..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.53 E-value=0.098 Score=47.56 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.++.+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999854
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.40 E-value=0.23 Score=51.02 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=25.4
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...++++|||+|.+. .......+..++...+.+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~-~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG-LAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGG-GHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccC-cHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 367899999999986 1233444555555544456666544
No 127
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.32 E-value=0.2 Score=47.51 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.7
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999998643
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.30 E-value=0.083 Score=64.86 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=53.9
Q ss_pred CChHHHHHHhhhhhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 290 ~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
.+++-|.++|..- +.+++|.|..|||||.+.+--++..+.... ......++|++++|+..+.++.+++.+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5789999999764 779999999999999986555555443310 0112337999999999999999988774
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.29 E-value=0.56 Score=48.94 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+++.||+|+|||....
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.92 E-value=1 Score=46.33 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999864
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.83 E-value=0.35 Score=50.66 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.||+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.81 E-value=0.88 Score=45.30 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998653
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.68 Score=47.10 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=26.0
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....++||||+|.+. ......+..++...+....+|+.|
T Consensus 109 ~~~~vliiDe~~~l~--~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALT--QDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCC--HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 457899999999986 233445566666655566666544
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.53 E-value=0.76 Score=47.19 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=29.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhh-----cCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il-----~g~dvii~apTGsGKTl~~ 322 (675)
..|+++.-.+.+.+.+...-. .+ ...+.+. ..+.+++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467777666666666653200 01 1112221 1357999999999999865
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.43 E-value=0.36 Score=50.57 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.5
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.39 E-value=0.54 Score=50.60 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=33.2
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
.++++|||.+-....+......+..+.....+..-++++.||...+.....
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 477899999865543444555666666666666667788887655444433
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.08 E-value=0.43 Score=46.46 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=31.4
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..|.-+++.|++|+|||...+..+...+.. +..++++.-.. ...++.+++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~------------~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM------------GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT------------TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc------------CCeEEEEEccC-CHHHHHHHHHHc
Confidence 356788999999999998654433333321 33567765432 234555555443
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.65 E-value=0.67 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.7
Q ss_pred hhcCCCEEEEccCCCCchHHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ll 324 (675)
+..|.-+++.||+|+|||.....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHH
Confidence 34567889999999999985443
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.64 E-value=2 Score=40.90 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=24.3
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
..-.+|||||+|.+. ......+..++...+....+|+.|.
T Consensus 125 ~~~~vlviDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGGGSC--HHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCceEEEEECccccc--HHHHHHHHHHHhcCCCceEEEEEeC
Confidence 345799999999975 3334445555555444555555543
No 140
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.63 E-value=0.41 Score=48.60 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.++++.||+|+|||..+.
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998654
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.35 E-value=1.2 Score=45.76 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=26.3
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
....+|+|||+|.+. ......+..++........+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~--~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMT--ADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccC--HHHHHHHHHHHHhcCCCceEEEEeC
Confidence 456899999999986 3334555666666655566665543
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.97 E-value=0.44 Score=48.86 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998654
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.74 E-value=0.83 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+++.||+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.13 E-value=1.5 Score=44.56 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999854
No 145
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.10 E-value=0.77 Score=53.24 Aligned_cols=79 Identities=8% Similarity=0.034 Sum_probs=66.9
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccccCCCCCc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASRGIDFAGV 607 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~GiDip~v 607 (675)
+.+++|.++++.-+.+.++.+.+... ..++.+..+||+++..++..+++.+.+|..+ |+|+|.. +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~-~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~----IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFS-KFNIHVALLIGATTPSEKEKIKSGLRNGQID----VVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHT-CSSCCEEECCSSSCHHHHHHHHHHHHSSCCC----EEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCC----EEEECHHHHhhhhhccCC
Confidence 46899999999999999999887753 2347899999999999999999999999888 9999964 4456788888
Q ss_pred CEEEE
Q 005837 608 DHVVL 612 (675)
Q Consensus 608 ~~VI~ 612 (675)
.+||.
T Consensus 492 ~lVVI 496 (780)
T 1gm5_A 492 GLVII 496 (780)
T ss_dssp CEEEE
T ss_pred ceEEe
Confidence 88876
No 146
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.07 E-value=1 Score=49.64 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=27.3
Q ss_pred ccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 419 INLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
....+|+|||+|.+.. +......+..++... ..++|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 3467999999999974 233344555555543 45677777764
No 147
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.02 E-value=2.2 Score=45.26 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=32.9
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+=-++..+.|++. .+.+|..++...++ -.+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 346788887556666666532 12233333322221 1367999999999999854
No 148
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.83 E-value=1.6 Score=41.48 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=67.2
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH-HHHHHHHHHHHhhcCCCCceEEEEECCc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~-La~Q~~~~l~~l~~~~~~~~v~~l~gg~ 384 (675)
-.+++..+.|.|||.+++-.++..+.. |-+|+|+.=.+. .-..=.+.+..+. +....+-.+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~------------G~rV~~vQF~Kg~~~~gE~~~l~~L~-----v~~~~~g~gf 91 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH------------GKNVGVVQFIKGTWPNGERNLLEPHG-----VEFQVMATGF 91 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT------------TCCEEEEESSCCSSCCHHHHHHGGGT-----CEEEECCTTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC------------CCeEEEEEeeCCCCCccHHHHHHhCC-----cEEEEccccc
Confidence 478899999999999988877777643 558888843221 0000011122221 1111111111
Q ss_pred ----chHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEe
Q 005837 385 ----RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 385 ----~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
........ . --..|.... ..+.-..+++||+||+-.... +.--...+..++...+...-+|+.+
T Consensus 92 ~~~~~~~~~~~~-~--------a~~~l~~a~--~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTG 160 (196)
T 1g5t_A 92 TWETQNREADTA-A--------CMAVWQHGK--RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG 160 (196)
T ss_dssp CCCGGGHHHHHH-H--------HHHHHHHHH--HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEEC
T ss_pred ccCCCCcHHHHH-H--------HHHHHHHHH--HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEEC
Confidence 00000000 0 011111111 123346799999999965421 2222345666667666666666555
Q ss_pred cCCCHHHHH
Q 005837 460 ATLPVEIYN 468 (675)
Q Consensus 460 AT~~~~v~~ 468 (675)
--.|.++.+
T Consensus 161 r~ap~~l~e 169 (196)
T 1g5t_A 161 RGCHRDILD 169 (196)
T ss_dssp SSCCHHHHH
T ss_pred CCCcHHHHH
Confidence 566666554
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.49 E-value=1.3 Score=45.04 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.++.+.++|++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356788899999999986544
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.32 E-value=1.3 Score=47.86 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=55.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH-hhcCCC-CceEEEE
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-LSKCGV-PFRSMVV 380 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~-l~~~~~-~~~v~~l 380 (675)
..|.-++|.|++|+|||...+-.+.+.... .+..+++++--.. ..|+..++.. ...... .+.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-----------~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~---- 261 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALK-----------EGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVR---- 261 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCC----
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHh----
Confidence 345678999999999998554444433321 1335777764321 2334333322 221111 111
Q ss_pred ECCcchHHHHHH-------hhCCCcEEEe-----CHHHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 381 TGGFRQKTQLEN-------LQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 381 ~gg~~~~~~~~~-------l~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
.|... ...+.. +. ...+.+- |++.+...+++- ..-..+++||||..+.+..
T Consensus 262 ~g~l~-~~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l-~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 262 LGQLT-DRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRL-VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp GGGCC-HHHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHH-HHHSCCCEEEEECGGGCBC
T ss_pred CCCCC-HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEcChhhcCC
Confidence 12111 222221 22 2345552 455555444331 1113588999999998873
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.14 E-value=1.5 Score=45.65 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=15.6
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
+.+++.||+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998653
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.04 E-value=0.96 Score=48.95 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=20.1
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQR 329 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~ 329 (675)
+..|.-+++.|++|+|||...+..+...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999998654444433
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.03 E-value=0.9 Score=46.06 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=25.4
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEec
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSA 460 (675)
...+|||||+|.+. ......+..++...+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMT--AGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSC--HHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCC--HHHHHHHHHHHhccCCCceEEEEeC
Confidence 47899999999986 2233445555665555666666553
No 154
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.26 E-value=1.6 Score=45.03 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.0
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
...+++||||+|.+. ......+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMT--NAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999986 334455666677666666666554
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.18 E-value=2.8 Score=43.15 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=28.5
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
..+.+++||||+|.+. ......+..++...+....+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~L~--~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT--KDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSC--HHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccC--HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3467899999999953 444556666666666666666666543
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.65 E-value=1.3 Score=45.15 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.1
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
....+++||||+|.|. ..-...+.+.+...+....+|+.|
T Consensus 80 ~~~~kvviIdead~lt--~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMT--QQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBC--HHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhC--HHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3568999999999996 223344555666555555555554
No 157
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.45 E-value=1.8 Score=45.77 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=64.8
Q ss_pred CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccccc----ccC
Q 005837 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRAS----RGI 602 (675)
Q Consensus 527 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~----~Gi 602 (675)
..+.++||.++++.-+.++++.++.+.. .++.+..+||+.+..++....+.+..+..+ |+|+|.-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~----Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYH----ILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCS----EEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCC----EEEECHHHHHHHHHHh
Confidence 3567899999999999999999999764 458899999999999999999999988777 999996322 124
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
+..++++||.
T Consensus 136 ~~~~~~~iVi 145 (414)
T 3oiy_A 136 SQKRFDFVFV 145 (414)
T ss_dssp TTCCCSEEEE
T ss_pred ccccccEEEE
Confidence 5567888775
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.27 E-value=0.92 Score=45.89 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.7
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998653
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.96 E-value=0.58 Score=50.67 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.+++++||+|+|||..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999998653
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.55 E-value=1.8 Score=45.63 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.6
Q ss_pred CCEEE--EccCCCCchHHHH
Q 005837 306 KSCIL--ADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii--~apTGsGKTl~~l 323 (675)
..++| .|+.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46778 8999999998643
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.38 E-value=6.7 Score=39.59 Aligned_cols=52 Identities=17% Similarity=0.027 Sum_probs=28.8
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
..+++||||+.-.+..+......+..+.....+..-++.+.++...+....+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 230 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH
Confidence 4678999999955532222334444444444444445556776555544443
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.80 E-value=1.1 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.3
Q ss_pred hhcCCCEEEEccCCCCchHHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ll 324 (675)
+..|.-+++.|++|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 44577889999999999985543
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.52 E-value=4.5 Score=44.15 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=26.5
Q ss_pred ceEEEEcCcccccCCc---------cHHHHHHHHHhhCCCCccEEEEecCCCH
Q 005837 421 LRCAILDEVDILFNDE---------DFEVALQSLISSSPVTAQYLFVTATLPV 464 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~---------~~~~~l~~il~~~~~~~qiI~lSAT~~~ 464 (675)
-.+|+|||+|.+.... .....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3589999999887411 1222344444545555667777777544
No 164
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.44 E-value=27 Score=35.21 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhcccccccceEEEEcCcccccC--CccHHHHHHHHHhhCCCCccEEEEe
Q 005837 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 403 Tp~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~--~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
+...+...+..... . --+|||||+|.+.. ...+...++.+..... +..+|+.+
T Consensus 123 ~~~~l~~~l~~~~~--~-~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK--D-NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS--S-CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred hHHHHHHHHHhcCC--C-CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 34455555544211 2 33899999999863 2456666776665542 44444433
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.03 E-value=1.5 Score=44.98 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=26.4
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
+..|.-++|.|++|+|||..++-.+.+... .+..+++++-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~------------~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD------------NDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT------------TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------------cCCeEEEEEC
Confidence 445677999999999999755444433322 1246788764
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.54 E-value=1.2 Score=46.29 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=26.5
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
+..|.-+++.|++|+|||..++-.+.+... .+..++|++-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~------------~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN------------DDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH------------TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeC
Confidence 344667889999999999865444443332 1447788764
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.18 E-value=5.3 Score=41.25 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=24.8
Q ss_pred cccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEe
Q 005837 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lS 459 (675)
.....++||||+|.+. ......+..++...+....+|+.|
T Consensus 117 ~~~~~vliiDe~~~l~--~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSC--HHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhc--HHHHHHHHHHHhcCCCceEEEEEe
Confidence 3457899999999986 333344555555554445555444
No 168
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.16 E-value=0.92 Score=40.44 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.5
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
...+.++++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999854
No 169
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.14 E-value=1.9 Score=54.61 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
++++++.+|+|+|||..+...+.+.. ..+.+++++...-
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEccc
Confidence 68999999999999997655444333 2355788887653
No 170
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.50 E-value=7.9 Score=39.31 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
++-+.+++++|+|||+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 45677899999999986543
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=81.43 E-value=5.3 Score=48.44 Aligned_cols=80 Identities=9% Similarity=0.105 Sum_probs=66.4
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-cccccCCCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-RASRGIDFAG 606 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-~~~~GiDip~ 606 (675)
.+.+++|.|+++.-+.+.++.+.+... ...+.+..+++..+..++..+++.+..|..+ |+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d----IvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVRIEMISRFRSAKEQTQILAEVAEGKID----ILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHST-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCS----EEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhh-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC----EEEECHHHHhCCccccc
Confidence 456899999999999999999887653 2347888999999999999999999999888 999995 4556688888
Q ss_pred cCEEEE
Q 005837 607 VDHVVL 612 (675)
Q Consensus 607 v~~VI~ 612 (675)
+.+||.
T Consensus 726 l~lvIi 731 (1151)
T 2eyq_A 726 LGLLIV 731 (1151)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 888775
No 172
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.28 E-value=3.6 Score=39.58 Aligned_cols=76 Identities=5% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----ccc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A-----SRG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~-----~~G 601 (675)
...++||.++++.-+.++++.++.+.....++.+..++|+.+..++...+ . ..+ |+|+|.- + ...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~----Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K--KCH----IAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T--SCS----EEEECHHHHHHHHHTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c--CCC----EEEECHHHHHHHHhcCC
Confidence 35689999999999999999999876544457889999998876655433 2 234 9999963 1 134
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 162 ~~~~~~~~lVi 172 (230)
T 2oxc_A 162 LNPGSIRLFIL 172 (230)
T ss_dssp SCGGGCCEEEE
T ss_pred cccccCCEEEe
Confidence 56777887775
No 173
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.62 E-value=2.6 Score=43.21 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=31.8
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHH-HHHHHHHHHHh
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLSNCRSL 368 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~L-a~Q~~~~l~~l 368 (675)
.|.-+++.|++|+|||...+..+.+........ ..+..++++.-...+ ..++...+..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g------g~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG------GLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT------CCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccC------CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 357789999999999986544333221110000 114578888654322 33444444443
No 174
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=80.33 E-value=7.5 Score=36.76 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=56.0
Q ss_pred CceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----cccCC
Q 005837 530 SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A-----SRGID 603 (675)
Q Consensus 530 ~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~-----~~GiD 603 (675)
.++||.|+++.-+.++++.++++.....++.+..++|+.+..++... +.++..+ |+|+|.- + ...++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~----i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPH----IVVGTPGRILALARNKSLN 155 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCS----EEEECHHHHHHHHHTTSSC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCC----EEEeCHHHHHHHHHhCCCC
Confidence 47999999999999999999887644335788999999887665543 3445445 9999952 1 23466
Q ss_pred CCCcCEEEE
Q 005837 604 FAGVDHVVL 612 (675)
Q Consensus 604 ip~v~~VI~ 612 (675)
+.++++||.
T Consensus 156 ~~~~~~lVi 164 (220)
T 1t6n_A 156 LKHIKHFIL 164 (220)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 778888775
No 175
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.21 E-value=20 Score=38.18 Aligned_cols=52 Identities=17% Similarity=0.027 Sum_probs=26.9
Q ss_pred ccceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
..++++|||=+-.+..+......+..+.....+..-++.+.|+...+....+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a 230 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH
Confidence 4567888886654432222334444444444444445666666554444433
No 176
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.98 E-value=6.6 Score=36.64 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----ccc-cC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----ASR-GI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~~-Gi 602 (675)
..++||.++++.-+.++++.+++......++.+..++|+.+..+.... +. +..+ |+|+|.- +.. .+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~----i~v~T~~~l~~~~~~~~~ 142 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---LD-DTVH----VVIATPGRILDLIKKGVA 142 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---TT-SCCS----EEEECHHHHHHHHHTTCS
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---cC-CCCC----EEEeCHHHHHHHHHcCCc
Confidence 457999999999999999999887654435788889999876554332 22 2334 9999962 222 34
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++.++++||.
T Consensus 143 ~~~~~~~lVi 152 (206)
T 1vec_A 143 KVDHVQMIVL 152 (206)
T ss_dssp CCTTCCEEEE
T ss_pred CcccCCEEEE
Confidence 6677888775
No 177
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.53 E-value=1.7 Score=46.85 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=26.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~P 353 (675)
..|.-++|.|++|+|||..++-.+.+.... +..++|++-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~------------g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN------------DDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT------------TCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc------------CCEEEEEEC
Confidence 446678999999999998655444443322 346788764
No 178
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.46 E-value=4.7 Score=48.66 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccccc-c---cC
Q 005837 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRAS-R---GI 602 (675)
Q Consensus 527 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~~-~---Gi 602 (675)
..+.++||.++++.-+.++++.++.+. ..++.+..+||+++..+|....+.+..|..+ |+|+|.-.- . -+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~----IlV~Tp~rL~~~l~~l 192 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH----ILVFSTQFVSKNREKL 192 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCS----EEEEEHHHHHHSHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC----EEEECHHHHHHHHHhh
Confidence 345689999999999999999999865 4457899999999998999999999998777 999996321 1 14
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++.++++||.
T Consensus 193 ~~~~l~~lVi 202 (1104)
T 4ddu_A 193 SQKRFDFVFV 202 (1104)
T ss_dssp HTSCCSEEEE
T ss_pred cccCcCEEEE
Confidence 5567888876
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.33 E-value=1.4 Score=42.83 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=18.3
Q ss_pred hhcCCCEEEEccCCCCchHHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ll 324 (675)
+..|.-+.+.||+|+|||+....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 34577899999999999986543
No 180
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.12 E-value=11 Score=36.62 Aligned_cols=79 Identities=9% Similarity=0.193 Sum_probs=55.0
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----cc
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----AS 599 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~ 599 (675)
......++||.++++.-+.++++.++++... .++.+..++|+.+..++...+ . +..+ |+|+|.- +.
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~---~-~~~~----I~v~Tp~~l~~~l~ 177 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLAL---A-KKPH----IIIATPGRLIDHLE 177 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHH---H-TCCS----EEEECHHHHHHHHH
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHh---c-CCCC----EEEECHHHHHHHHH
Confidence 3334557999999999999999988876532 236788899998766554332 2 2344 9999952 11
Q ss_pred --ccCCCCCcCEEEE
Q 005837 600 --RGIDFAGVDHVVL 612 (675)
Q Consensus 600 --~GiDip~v~~VI~ 612 (675)
.++++..+++||.
T Consensus 178 ~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 178 NTKGFNLRALKYLVM 192 (249)
T ss_dssp HSTTCCCTTCCEEEE
T ss_pred cCCCcCccccCEEEE
Confidence 3567778888775
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.39 E-value=25 Score=35.97 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=37.9
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHHHHh
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l~~~ 473 (675)
..+++++|.+............+..+.+.+.+...++++.++...+..+.+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 356788999876644455666677666666677788899998877766655443
No 182
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.23 E-value=3.9 Score=47.97 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.+++++||+|+|||..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999986543
No 183
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.93 E-value=2.6 Score=45.06 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=30.8
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~ 359 (675)
...+++|.|+||+|||... ..++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-----------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-----------CCCcEEEEeCCCchhH
Confidence 3578999999999999974 233333332 1447888888877764
No 184
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=74.75 E-value=9.1 Score=36.93 Aligned_cols=75 Identities=9% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----ccc-ccC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RAS-RGI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~-~Gi 602 (675)
+.++||.++++.-+.++++.++++... .++.+..++|+.+..++...+.. + .+ |+|+|. .+. ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~---~-~~----I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLER---G-VE----ICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHH---C-CS----EEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcC---C-CC----EEEECHHHHHHHHHcCCC
Confidence 557999999999999999888876533 23788889999887766554432 2 34 999995 222 245
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++.++++||.
T Consensus 173 ~~~~~~~lVi 182 (242)
T 3fe2_A 173 NLRRTTYLVL 182 (242)
T ss_dssp CCTTCCEEEE
T ss_pred CcccccEEEE
Confidence 7788888875
No 185
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=74.49 E-value=15 Score=32.99 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---Hh-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+...... .+ ....+|+|+|.- + ...+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----A-ARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G-TTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----h-hcCCchhc
Confidence 347999999999999999888875 356888888876554432 22 245789999942 2 23456777
Q ss_pred ceEEEEcC
Q 005837 421 LRCAILDE 428 (675)
Q Consensus 421 i~~IVIDE 428 (675)
++++|.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887644
No 186
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=74.08 E-value=10 Score=41.24 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc
Q 005837 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597 (675)
Q Consensus 518 ~~l~~ll~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~ 597 (675)
..+...++.. +.+++|.|.|...++++.+.|.+.+ +.+..... .. .+..|. |.|+...
T Consensus 372 ~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~-----i~~~~~~~-~~---------~~~~g~------v~i~~g~ 429 (483)
T 3hjh_A 372 DALRKFLETF-DGPVVFSVESEGRREALGELLARIK-----IAPQRIMR-LD---------EASDRG------RYLMIGA 429 (483)
T ss_dssp HHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGT-----CCCEECSC-GG---------GCCTTC------EEEEESC
T ss_pred HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcC-----CCceecCc-hh---------hcCCCc------EEEEEcc
Confidence 4555555433 4689999999999999999998865 33322211 10 112232 7788888
Q ss_pred ccccCCCCCcCEEEE
Q 005837 598 ASRGIDFAGVDHVVL 612 (675)
Q Consensus 598 ~~~GiDip~v~~VI~ 612 (675)
+..|+-+|+.+++|.
T Consensus 430 L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 430 AEHGFVDTVRNLALI 444 (483)
T ss_dssp CCSCEEETTTTEEEE
T ss_pred cccCcccCCCCEEEE
Confidence 999999999888876
No 187
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.93 E-value=16 Score=39.69 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=28.9
Q ss_pred cceEEEEcCcccccCCccHHHHHHHHH---hhCC---CCccEEEEecCCCHHHHHHHHH
Q 005837 420 NLRCAILDEVDILFNDEDFEVALQSLI---SSSP---VTAQYLFVTATLPVEIYNKLVE 472 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~~~~~~l~~il---~~~~---~~~qiI~lSAT~~~~v~~~l~~ 472 (675)
.++++|||=+-++.....+...+..+. +.+. +..-++.+.||...+....+..
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 467899998866532222333333332 2221 2334678899887665554433
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=73.57 E-value=4.4 Score=41.48 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=50.9
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcch
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~ 386 (675)
-++|.+|.|+|||...+-.+.+.... ..+.+++++..-..+... ++++++.. ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~----------g~g~~vlyId~E~s~~~~---ra~~lGvd---~d---------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ----------YPDAVCLFYDSEFGITPA---YLRSMGVD---PE---------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH----------CTTCEEEEEESSCCCCHH---HHHHTTCC---GG----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----------CCCceEEEEeccchhhHH---HHHHhCCC---HH----------
Confidence 57889999999998765544443322 124588998865544322 34555421 11
Q ss_pred HHHHHHhhCCCcEEEe---CHHHH-HHHHHh-cccccccceEEEEcCccccc
Q 005837 387 KTQLENLQEGVDVLIA---TPGRF-MFLIKE-GILQLINLRCAILDEVDILF 433 (675)
Q Consensus 387 ~~~~~~l~~~~~IlV~---Tp~~L-~~~l~~-~~~~l~~i~~IVIDEaH~l~ 433 (675)
++++. |.+.+ +.++.. ..+.-..+++||||-+..+.
T Consensus 84 -----------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12332 23333 333222 11334568999999998775
No 189
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.99 E-value=9.3 Score=44.01 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.9
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999999654
No 190
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.52 E-value=6.6 Score=45.26 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
..++++.||+|+|||..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4689999999999998654
No 191
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.45 E-value=21 Score=35.94 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=27.7
Q ss_pred ccceEEEEcCccccc--CCccHHHHHHHHHhhCCCCccEEEEecCCCHHHHHHH
Q 005837 419 INLRCAILDEVDILF--NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (675)
Q Consensus 419 ~~i~~IVIDEaH~l~--~~~~~~~~l~~il~~~~~~~qiI~lSAT~~~~v~~~l 470 (675)
..++++|||=+-.+. .+......+..+........-++.+.|+...+....+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~ 232 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA 232 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHH
Confidence 457899999875543 1112233344443444445556667776544444333
No 192
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.39 E-value=5.5 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=16.4
Q ss_pred CCEEEEccCCCCchHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~ 326 (675)
..+++++++|+|||....-.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478899999999998654433
No 193
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=72.35 E-value=21 Score=32.08 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+...+.+. ++.+..++|+.+....... + .....|+|+|.- + ...+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-ARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----G-TTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----h-hcCCCccc
Confidence 458999999999999988888774 3567888888765544322 2 245889999942 2 23456777
Q ss_pred ceEEEEcCc
Q 005837 421 LRCAILDEV 429 (675)
Q Consensus 421 i~~IVIDEa 429 (675)
++++|.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888776443
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.29 E-value=2.1 Score=45.94 Aligned_cols=54 Identities=24% Similarity=0.416 Sum_probs=35.6
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+--++..+.|.+. -+.+|..++...++. .+.+++.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~---prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA---PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC---CCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCeeEEECcCCCCHHHHH
Confidence 446899998777777777542 223344444333321 367999999999999854
No 195
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=72.04 E-value=18 Score=33.67 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
++++||.|+++.-+..+...+.+. ++.+..+.|+.+....... + .....|+|+|. .+. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCccc
Confidence 347999999999999999888775 3567888888766544322 2 24689999994 222 3457778
Q ss_pred ceEEEEcC
Q 005837 421 LRCAILDE 428 (675)
Q Consensus 421 i~~IVIDE 428 (675)
++++|.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.91 E-value=10 Score=43.78 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=31.5
Q ss_pred cccccccCCCHHHHHHHHHC-C--CCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 267 RKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 267 ~~~f~~~~l~~~l~~~l~~~-g--~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
...|.+.+--++..+.|.+. . +.++..++... +...+.+++.||.|+|||+.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 35677777777777777653 1 11221111100 111357999999999999854
No 197
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=71.76 E-value=31 Score=31.23 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---Hh-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+........ .+ .....|+|+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 457999999999999998888775 356788888876655432 22 246899999942 1 23456777
Q ss_pred ceEEEEcC
Q 005837 421 LRCAILDE 428 (675)
Q Consensus 421 i~~IVIDE 428 (675)
++++|.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88887644
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.94 E-value=5 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.++.+++.||+|+|||+.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999864
No 199
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.90 E-value=8 Score=37.23 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----cccc-c
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASR-G 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~-G 601 (675)
...++||.++++.-+.++++.++.+... .++.+..++|+...... ...+..+..+ |+|+|. .+.. .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~---~~~l~~~~~~----Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNE---MQKLQAEAPH----IVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC----------------CCCS----EEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHH---HHHHhcCCCC----EEEECHHHHHHHHHhCC
Confidence 3568999999999999999999887632 23667777887654332 2344444445 999993 2333 3
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++..+++||.
T Consensus 169 ~~~~~~~~lVi 179 (237)
T 3bor_A 169 LSPKWIKMFVL 179 (237)
T ss_dssp SCSTTCCEEEE
T ss_pred cCcccCcEEEE
Confidence 56677888775
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.47 E-value=2.2 Score=44.52 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=25.5
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
.|.-++|.+|+|+|||...+..+ ..+.. .+..++++..-.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la-~~~~~-----------~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAI-AEAQK-----------MGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH-HHHHH-----------TTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHHh-----------cCCeEEEEeccc
Confidence 45678899999999998543333 22222 134677876543
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.06 E-value=19 Score=38.40 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=15.7
Q ss_pred CCEEEEccCCCCchHHHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~ 326 (675)
+.+++++++|+|||++..-.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357778999999999754433
No 202
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.62 E-value=4.6 Score=38.57 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=25.5
Q ss_pred hHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 292 ~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+.-|..++..+..|.-+.+.||.|+|||+..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3446778888888989999999999999853
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.87 E-value=5.5 Score=41.16 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
++.+++.||+|+|||..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 204
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=68.81 E-value=15 Score=37.90 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=56.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----cccC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A-----SRGI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~-----~~Gi 602 (675)
..++||.|+++.-+.++++.++++.....++.+..++|+.+..+.... +..+..+ |+|+|.- + ...+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~----iiv~T~~~l~~~~~~~~~ 148 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPH----IVVGTPGRILALARNKSL 148 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCS----EEEECHHHHHHHHHTTSS
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCC----EEEECHHHHHHHHHcCCc
Confidence 458999999999999999999887544335789999999887665543 3445445 9999952 2 2345
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++.++++||.
T Consensus 149 ~~~~~~~vVi 158 (391)
T 1xti_A 149 NLKHIKHFIL 158 (391)
T ss_dssp CCTTCSEEEE
T ss_pred cccccCEEEE
Confidence 6778888775
No 205
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=67.96 E-value=17 Score=33.62 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----cc-cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----AS-RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~-~G 601 (675)
...++||.++++.-+.++++.++..... +.+..++|+.+..++...+. . ..+ |+|+|.- +. ..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~-~~~----i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALL---R-GAD----AVVATPGRALDYLRQGV 139 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHH---H-CCS----EEEECHHHHHHHHHHTS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhh---C-CCC----EEEECHHHHHHHHHcCC
Confidence 3567999999999999999999887533 67788898877554443332 2 234 9999951 22 24
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 140 ~~~~~~~~iVi 150 (207)
T 2gxq_A 140 LDLSRVEVAVL 150 (207)
T ss_dssp SCCTTCSEEEE
T ss_pred cchhhceEEEE
Confidence 56777888775
No 206
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=67.85 E-value=19 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
+.+++.||.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999854
No 207
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=67.84 E-value=4.4 Score=41.29 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCCCchHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l 327 (675)
.|.-+++.|++|+|||...+-.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999986544333
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=67.82 E-value=3.2 Score=40.07 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=19.2
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l 330 (675)
.|.-+++.|++|+|||..++-.+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356789999999999985544344433
No 209
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.58 E-value=13 Score=35.51 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c----cc--
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A----SR-- 600 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~----~~-- 600 (675)
.+.++||.++++.-+.++++.+++++.. .++.+..++|+.+..+....+ +..+ |+|+|.- + ..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-----~~~~----iiv~Tp~~l~~~l~~~~ 165 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERI-----NNIN----ILVCTPGRLLQHMDETV 165 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-SSCCEEEECCC--CHHHHHHH-----TTCS----EEEECHHHHHHHHHHCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCC-CCeeEEEEECCCCHHHHHHhC-----CCCC----EEEECHHHHHHHHHhcC
Confidence 3567999999999999999999887632 346788899987655443332 2334 9999952 2 12
Q ss_pred cCCCCCcCEEEE
Q 005837 601 GIDFAGVDHVVL 612 (675)
Q Consensus 601 GiDip~v~~VI~ 612 (675)
.+++.++++||.
T Consensus 166 ~~~~~~~~~lVi 177 (236)
T 2pl3_A 166 SFHATDLQMLVL 177 (236)
T ss_dssp SCCCTTCCEEEE
T ss_pred CcccccccEEEE
Confidence 366677887775
No 210
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=67.29 E-value=4.4 Score=42.20 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+..+++.||||||||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457899999999999853
No 211
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.08 E-value=26 Score=34.20 Aligned_cols=75 Identities=8% Similarity=0.107 Sum_probs=53.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc------ccc-cc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD------RAS-RG 601 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~------~~~-~G 601 (675)
+.++||.++++.-+.++++.++++... ....+..++|+.....+... +..+ .+ |+|+|. ... .+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~~-~~----Iiv~Tp~~l~~~~~~~~~ 196 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQK---LGNG-IN----IIVATPGRLLDHMQNTPG 196 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHH---HHHC-CS----EEEECHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHH---hcCC-CC----EEEEcHHHHHHHHHccCC
Confidence 567999999999999999999887633 33677888898776554433 3333 45 999994 211 24
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 197 ~~~~~l~~lVi 207 (262)
T 3ly5_A 197 FMYKNLQCLVI 207 (262)
T ss_dssp CCCTTCCEEEE
T ss_pred cccccCCEEEE
Confidence 67788888775
No 212
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.08 E-value=5.5 Score=42.43 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.+..+++.||||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345688999999999985
No 213
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.87 E-value=7.3 Score=36.92 Aligned_cols=75 Identities=7% Similarity=0.122 Sum_probs=47.0
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc------ccc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA------SRG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~------~~G 601 (675)
...++||.++++.-+.++++.++.+... .++.+..++|+.+..++... +.+ .+ |+|+|.-. ...
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~--~~----iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEG---LRD--AQ----IVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC-------------CTT--CS----EEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhc---CCC--CC----EEEECHHHHHHHHHhCC
Confidence 3568999999999999999999886532 24778888998765544332 222 34 99999521 234
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++..+++||.
T Consensus 151 ~~~~~~~~iVi 161 (224)
T 1qde_A 151 FRTDKIKMFIL 161 (224)
T ss_dssp SCCTTCCEEEE
T ss_pred cchhhCcEEEE
Confidence 56677888775
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=66.79 E-value=8.4 Score=42.01 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=19.2
Q ss_pred hhcCCCEEEEccCCCCchHHHHHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~llp~l 327 (675)
+..|.-++|.|++|+|||...+-.+.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34567789999999999986544443
No 215
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=66.48 E-value=7.3 Score=39.75 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=28.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHhhhhhc-----CCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-----GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~~i~~il~-----g~dvii~apTGsGKTl~~ 322 (675)
.+|++++=.+.+.+.|.+.-. .|. -.+.+.. .+.+++.||+|+|||+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467777666666666542100 000 0112222 267999999999999854
No 216
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=65.99 E-value=13 Score=35.27 Aligned_cols=75 Identities=7% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc------cccc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR------ASRG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~------~~~G 601 (675)
.+.++||.++++.-+.++++.++.+.. .++.+..++|+.+..++... +..+ .+ |+|+|.- ....
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~-~~----iiv~Tp~~l~~~~~~~~ 162 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIED---ISKG-VD----IIIATPGRLNDLQMNNS 162 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHH---HHSC-CS----EEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHH---hcCC-CC----EEEECHHHHHHHHHcCC
Confidence 456799999999999999999988752 23678888888765544332 3333 34 9999952 1235
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 163 ~~~~~~~~lVi 173 (228)
T 3iuy_A 163 VNLRSITYLVI 173 (228)
T ss_dssp CCCTTCCEEEE
T ss_pred cCcccceEEEE
Confidence 67778888775
No 217
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.84 E-value=3.4 Score=37.92 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.6
Q ss_pred hcCCCEEEEccCCCCchHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~l 323 (675)
..++.+++.|++|+|||.+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999999654
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=65.49 E-value=3.1 Score=41.41 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHH-HHHhhh--hhcCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPP--VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ-~~~i~~--il~g~dvii~apTGsGKTl~~ 322 (675)
..|+++.-.+...+.+...-. .+.+ .+.+.. +.....+++.||+|+|||..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777656666665543200 0000 111111 123568999999999999854
No 219
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=64.78 E-value=18 Score=40.33 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=51.2
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHH--hcCCCCCCceEEEEcc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF--TTSRSKEARLFLVCTD 596 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F--~~g~~~~~~~VLVaT~ 596 (675)
.+.+||.++++.-+.+..+.|..++ +.+..++++++..++..++..+ ..+..+ ||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~----Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELK----LIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCC----EEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCC----EEEECh
Confidence 4689999999999999999998875 7889999999999999998888 455566 999997
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=64.58 E-value=3.5 Score=38.11 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999954
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.44 E-value=6.4 Score=41.30 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~ 356 (675)
.+.+++|.|+||+|||...-..+.+.. ..+.+++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~------------~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY------------MQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH------------HCCCEEEEEeCCcC
Confidence 567899999999999986544333322 12557888878654
No 222
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=64.34 E-value=5.8 Score=40.09 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=50.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc------c-cc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA------S-RG 601 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~------~-~G 601 (675)
..++||.++++.-|.+++..++.+......+.+..++++.....+. .. ...|||+|.-- . ..
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KI----SEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CC----CCSEEEECHHHHHHHHTTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cC----CCCEEEECHHHHHHHHHhcCC
Confidence 3479999999999999999998876544456777777765432111 12 23399999632 1 35
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 231 ~~l~~l~~lVl 241 (300)
T 3fmo_B 231 IDPKKIKVFVL 241 (300)
T ss_dssp CCGGGCSEEEE
T ss_pred CChhhceEEEE
Confidence 77888998886
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.21 E-value=9.3 Score=48.61 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=30.4
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~ 362 (675)
.++++++.+++|+|||..+...+.+.+.. +.+++++.- .++..++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~------------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE------------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT------------TCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEEc-cccHHHHH
Confidence 46889999999999999765555544422 446777753 33444444
No 224
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=64.17 E-value=27 Score=31.59 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=52.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++..+..+...+.+. ++.+..++|+.+....... + ....+|+|+|.- + ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCccc
Confidence 458999999999999988888764 3568888888776554322 2 246899999942 1 23456778
Q ss_pred ceEEEEcC
Q 005837 421 LRCAILDE 428 (675)
Q Consensus 421 i~~IVIDE 428 (675)
++++|.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88888544
No 225
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=64.14 E-value=13 Score=40.74 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~ 596 (675)
.+.+||.++++.-+.+..+.|+..+ +.+..+|++.+..++..++..+..+..+ |+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~----ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIR----LLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCS----EEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCC----EEEECH
Confidence 4689999999999999999998865 7888999999999999999999999887 999985
No 226
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=64.14 E-value=5.7 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
...+++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 227
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.80 E-value=24 Score=38.47 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.6
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++++++|+|||..+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577889999999986543
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.68 E-value=3.7 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=17.3
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.++.+++.|++|||||...-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467899999999999996543
No 229
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.60 E-value=21 Score=34.51 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----cccC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A-----SRGI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~-----~~Gi 602 (675)
+.++||.++++.-+.++++.++.+... ..+.+..++|+.+..+....+ . ...+ |+|+|.- + ...+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~---~-~~~~----Ivv~Tp~~l~~~l~~~~~ 170 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREV---Q-MGCH----LLVATPGRLVDFIEKNKI 170 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHH---S-SCCS----EEEECHHHHHHHHHTTSB
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHh---C-CCCC----EEEECHHHHHHHHHcCCC
Confidence 358999999999999999999887533 246788889887665543322 2 2334 9999962 2 1235
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++..+++||.
T Consensus 171 ~~~~~~~lVi 180 (253)
T 1wrb_A 171 SLEFCKYIVL 180 (253)
T ss_dssp CCTTCCEEEE
T ss_pred ChhhCCEEEE
Confidence 6777888775
No 230
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.77 E-value=3.4 Score=45.39 Aligned_cols=29 Identities=21% Similarity=0.096 Sum_probs=21.2
Q ss_pred HHHHHHhhh-hhcCCCEEEEccCCCCchHH
Q 005837 293 QIQAMAFPP-VVEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 293 ~iQ~~~i~~-il~g~dvii~apTGsGKTl~ 321 (675)
+.+..-+.. +..+.+++++||||||||+.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 444444444 34678899999999999984
No 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=62.16 E-value=9.5 Score=37.98 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999864
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=62.03 E-value=4.1 Score=37.44 Aligned_cols=20 Identities=25% Similarity=0.092 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
.+.+++.|++|||||.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45789999999999996644
No 233
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=62.00 E-value=4.3 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=61.91 E-value=4.4 Score=42.22 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.5
Q ss_pred hhcCCCEEEEccCCCCchHH
Q 005837 302 VVEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~ 321 (675)
+..|..++++||||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45688999999999999984
No 235
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.79 E-value=6.6 Score=38.53 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+.++++.|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999854
No 236
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.69 E-value=3.5 Score=40.87 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.5
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
+..|..+.++||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999854
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.53 E-value=3.9 Score=42.23 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.7
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
+-++|+||||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999986544
No 238
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.41 E-value=10 Score=47.56 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=52.9
Q ss_pred CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcc
Q 005837 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~ 385 (675)
+.+.|.+|.|||||+.++-.+.+... .+..++++.+--+|.... +++++- ++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~------------~g~~~~~i~~e~~~~~~~---~~~~Gv---~~~--------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR------------EGKTCAFIDAEHALDPIY---ARKLGV---DID--------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH------------TTCCEEEECTTSCCCHHH---HHHTTC---CGG---------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh------------cCCeEEEEecCCCCCHHH---HHHcCC---CHH---------
Confidence 55889999999999976443333322 256889998866555543 555543 221
Q ss_pred hHHHHHHhhCCCcEEEeCH---HHHHHHHHhcccccccceEEEEcCcccccC
Q 005837 386 QKTQLENLQEGVDVLIATP---GRFMFLIKEGILQLINLRCAILDEVDILFN 434 (675)
Q Consensus 386 ~~~~~~~l~~~~~IlV~Tp---~~L~~~l~~~~~~l~~i~~IVIDEaH~l~~ 434 (675)
+++++-| +.-+..... ...-..+++||||.+-.+..
T Consensus 1485 ------------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ------------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ------------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred ------------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 2445444 333322222 22234578999999987653
No 239
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=61.38 E-value=9 Score=41.20 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
++++++.||+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999998653
No 240
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=60.11 E-value=23 Score=32.64 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=42.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHH---HHHh-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENL-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~---~~~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+...+... ++.+..+.|+.+.... ...+ .....|+|+|.- +. ..+++..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~-~Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----AA-RGLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-----hh-cCCCccc
Confidence 458999999999999988888774 3567788887654432 2222 346889999942 22 2346777
Q ss_pred ceEEEE
Q 005837 421 LRCAIL 426 (675)
Q Consensus 421 i~~IVI 426 (675)
++++|.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 877776
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=60.10 E-value=16 Score=36.25 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998653
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.77 E-value=11 Score=38.90 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
...++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999999653
No 243
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=59.56 E-value=14 Score=44.42 Aligned_cols=93 Identities=12% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCe----eEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccccC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRV----RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASRGI 602 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~----~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~Gi 602 (675)
.+.++||.++++.-+.++++.++.+... .++ .+..+||+.+..++.+..+.+.+ .+ |+|+|.- +..-+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~----IlV~TP~~L~~~l 170 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEK-AGVGTENLIGYYHGRIPKREKENFMQNLRN--FK----IVITTTQFLSKHY 170 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS----EEEEEHHHHHHCS
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCCCccceEEEEeCCCChhhHHHHHhhccC--CC----EEEEcHHHHHHHH
Confidence 3568999999999999999999887643 235 78999999999888887777776 55 9999962 22222
Q ss_pred C-CCCcCEEEEcC------CCCCHHHHHHHhc
Q 005837 603 D-FAGVDHVVLFD------FPRDPSEYVRRVG 627 (675)
Q Consensus 603 D-ip~v~~VI~~d------~p~s~~~y~Qr~G 627 (675)
. +..+++||.=. .-.++...++++|
T Consensus 171 ~~L~~l~~lViDEah~~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 171 RELGHFDFIFVDDVDAILKASKNVDKLLHLLG 202 (1054)
T ss_dssp TTSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred HHhccCCEEEEeChhhhhhccccHHHHHHHhC
Confidence 2 55788877522 1223444555565
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.37 E-value=4.8 Score=37.63 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..|.-+++.||+|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999854
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.34 E-value=4.9 Score=37.80 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.4
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
+..++-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345778999999999999854
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.30 E-value=4.9 Score=38.06 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4567889999999999954
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.22 E-value=5.1 Score=37.66 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999954
No 248
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.12 E-value=11 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.07 E-value=4.3 Score=43.50 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=31.7
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+=-++..+.|.+. -+.+|..++...++ -.+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHHH
Confidence 345788887666666555431 12222222222211 1367999999999999854
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=59.04 E-value=9.3 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
+.+++.||+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 56999999999999854
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=59.01 E-value=5 Score=36.53 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
++.+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568899999999999653
No 252
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.95 E-value=6.2 Score=42.05 Aligned_cols=54 Identities=28% Similarity=0.486 Sum_probs=32.6
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+=-+++.+.|++. -+.+|..++...++. .+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP---PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---CSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCCCceECCCCchHHHHH
Confidence 346888887555555555431 223333333333221 367999999999999854
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.83 E-value=5.2 Score=37.32 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.|.-+.+.||+|+|||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999954
No 254
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=57.77 E-value=4.5 Score=41.34 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.-++|.||||+|||..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3478899999999986543
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=57.66 E-value=4.2 Score=37.58 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.0
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
+..|..+++.|+.|+|||+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677899999999999954
No 256
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.45 E-value=5 Score=43.87 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 295 QAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 295 Q~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
-..++-.+..+.++++.||+|+|||..+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3445555677899999999999999854
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=57.35 E-value=5.1 Score=39.38 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-++++||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999999654
No 258
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=57.31 E-value=31 Score=36.49 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----ccc-cC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----ASR-GI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~~-Gi 602 (675)
..++||.+++++-+.++++.++++... ..+.+..++|+.+..++...+ .. ..+ |+|+|.- +.+ .+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l---~~-~~~----Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECI---TR-GCH----VVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHH---TT-CCS----EEEECHHHHHHHHHTTSC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHh---hc-CCC----EEEEChHHHHHHHHhCCc
Confidence 457999999999999999999887633 346778889998876654432 22 234 9999952 222 35
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++..+++||.
T Consensus 200 ~l~~~~~lVl 209 (434)
T 2db3_A 200 TFEDTRFVVL 209 (434)
T ss_dssp CCTTCCEEEE
T ss_pred ccccCCeEEE
Confidence 6778888875
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.23 E-value=4.3 Score=36.50 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999553
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.22 E-value=5.5 Score=36.55 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+++.|+.|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999999653
No 261
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.01 E-value=70 Score=34.79 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhcccccc
Q 005837 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLI 419 (675)
Q Consensus 344 ~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~ 419 (675)
.+.++||.|+++.-+..+++.+.+... .++.+..++|+......... + ....+|+|+|.- + ..-+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h-hcCCCcc
Confidence 356899999999999999999988643 24668888888776554322 2 356899999962 2 2356778
Q ss_pred cceEEEEcCc
Q 005837 420 NLRCAILDEV 429 (675)
Q Consensus 420 ~i~~IVIDEa 429 (675)
.+++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8888876543
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=56.67 E-value=6.4 Score=35.60 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999954
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.61 E-value=5 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=19.8
Q ss_pred HhhhhhcCCCEEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+...+..+.++++.||+|+|||..+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999854
No 264
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=56.55 E-value=4.7 Score=41.45 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.2
Q ss_pred hhcCCCEEEEccCCCCchHH
Q 005837 302 VVEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~ 321 (675)
+..|+.+.++||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=56.50 E-value=5.3 Score=40.69 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
-++|+||||+|||..+.-
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 367899999999986543
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.47 E-value=5.3 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
++-+++.||||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999998754
No 267
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.05 E-value=17 Score=36.01 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCCCChHHH-HHHhhhhhcCC-----CEEEEccCCCCchHHHH
Q 005837 278 YMIESLKRQNFLRPSQIQ-AMAFPPVVEGK-----SCILADQSGSGKTLAYL 323 (675)
Q Consensus 278 ~l~~~l~~~g~~~~~~iQ-~~~i~~il~g~-----dvii~apTGsGKTl~~l 323 (675)
.+.+-|+-.|+. +++ ..++..++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 567777767765 444 23344455442 48889999999998654
No 268
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.88 E-value=4.7 Score=43.45 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=33.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+=-+++.+.|++. -+.+|..++...+ --.+.+++.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 446888888777777766542 1222222222211 12467999999999999854
No 269
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=55.65 E-value=41 Score=31.62 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=51.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+....... + ....+|+|+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----A-ARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----T-TCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----h-hcCCCCcc
Confidence 458999999999999988888775 3567888998776554332 2 245889999941 2 23567778
Q ss_pred ceEEEE
Q 005837 421 LRCAIL 426 (675)
Q Consensus 421 i~~IVI 426 (675)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888774
No 270
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=55.61 E-value=5.1 Score=49.35 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.|+.+-|+|+||||||...
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 4678899999999999854
No 271
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.46 E-value=6 Score=40.10 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999864
No 272
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.97 E-value=30 Score=35.42 Aligned_cols=75 Identities=7% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc------ccc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA------SRG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~------~~G 601 (675)
...++||.|+++.-+.++++.+.+.... .++.+..++|+.+..+....+. . .+ |+|+|.-. ...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~---~--~~----i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR---D--AQ----IVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH---H--CS----EEEECHHHHHHHHHTTS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC---C--CC----EEEECHHHHHHHHHhCC
Confidence 3568999999999999999988876532 3477888999988776655443 2 33 99999421 123
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+.+..+++||.
T Consensus 158 ~~~~~~~~vIi 168 (394)
T 1fuu_A 158 FRTDKIKMFIL 168 (394)
T ss_dssp SCCTTCCEEEE
T ss_pred cchhhCcEEEE
Confidence 45566777775
No 273
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.92 E-value=54 Score=33.85 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhcccccc
Q 005837 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLI 419 (675)
Q Consensus 344 ~~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~ 419 (675)
.+.++||.|+++..+..+.+.+.+. ++.+..++|+......... + ....+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 4568999999999999998888874 3568888888776544322 2 24689999996 233 356788
Q ss_pred cceEEEE
Q 005837 420 NLRCAIL 426 (675)
Q Consensus 420 ~i~~IVI 426 (675)
.++++|.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 274
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.91 E-value=5.7 Score=42.43 Aligned_cols=54 Identities=13% Similarity=0.342 Sum_probs=31.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHhhhhhcCCCEEEEccCCCCchHHH
Q 005837 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 266 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~il~g~dvii~apTGsGKTl~~ 322 (675)
+..+|++.+=-+++.+.+.+. .+.+|..++...++ -.+-+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHHH
Confidence 345788887666666555431 11222222222211 1356999999999999854
No 275
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.57 E-value=6.6 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999999653
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=54.34 E-value=6.6 Score=37.14 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
+.++-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 35777899999999999853
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.53 E-value=5.1 Score=36.79 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+..+++.|+.|||||+..-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999996543
No 278
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.28 E-value=6.2 Score=38.47 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=27.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHH-HHHHhhhhh--cCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQI-QAMAFPPVV--EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~i-Q~~~i~~il--~g~dvii~apTGsGKTl~~ 322 (675)
.+|+++.-.+.....++..-. .+ ...++..+- -.+.+++.||+|+|||..+
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 467777666665555543210 00 012222211 1244899999999999854
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=53.00 E-value=7 Score=35.11 Aligned_cols=17 Identities=18% Similarity=-0.033 Sum_probs=14.3
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999654
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=52.90 E-value=6.5 Score=40.27 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.0
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.++|+||||+|||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 281
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.78 E-value=8.5 Score=37.82 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.4
Q ss_pred hcCCCEEEEccCCCCchHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ll 324 (675)
+.++.+++.|++|+|||...-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3488999999999999996543
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.52 E-value=8.1 Score=35.68 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=14.1
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999854
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=52.48 E-value=8.2 Score=36.86 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..|+-+.++||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999853
No 284
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.38 E-value=6.8 Score=38.11 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 285
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=51.92 E-value=95 Score=34.05 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=56.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+++.+.+... .++.+..++|+......... + ....+|+|+|.- + ...+++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~-~~GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h-hcCCCccc
Confidence 56899999999999999999988643 24668888888766554322 2 346899999962 2 23567788
Q ss_pred ceEEEEcCc
Q 005837 421 LRCAILDEV 429 (675)
Q Consensus 421 i~~IVIDEa 429 (675)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886554
No 286
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=51.53 E-value=18 Score=37.74 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
.+++++.||+|+|||..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.31 E-value=6.2 Score=41.31 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..+..++++||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999853
No 288
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.26 E-value=14 Score=37.47 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+.-+.++||+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456788999999999853
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.94 E-value=12 Score=40.99 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=20.0
Q ss_pred cCCCEEEEccCCCCchHHHHHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~l~~l 330 (675)
.+.+++|.|+||||||.+.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999997544443333
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.68 E-value=8 Score=35.03 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
-+++.|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4788999999999965
No 291
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=50.28 E-value=16 Score=44.31 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=41.8
Q ss_pred CEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHHh
Q 005837 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~l 368 (675)
..+|.|..|||||.+..--++..+.................+|+|+=|+..+.++..++++.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999999876666666643110000000012237999999999999999888774
No 292
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.28 E-value=2e+02 Score=28.93 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=62.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---Hhh-CCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+++.+++. ++.+..++|+........ .+. ...+|+|+|.- + ...+++..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----L-ARGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----G-SSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-hcCCCccc
Confidence 468999999999999999888875 345778888876554432 222 45789999952 2 34567888
Q ss_pred ceEEEEcCcccccC-CccHHHHHHHHHhhC
Q 005837 421 LRCAILDEVDILFN-DEDFEVALQSLISSS 449 (675)
Q Consensus 421 i~~IVIDEaH~l~~-~~~~~~~l~~il~~~ 449 (675)
++++|.-+...+.. ..+....++.+-+..
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~g 341 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTG 341 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSS
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccc
Confidence 99998766554321 124445555554443
No 293
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.94 E-value=6.8 Score=38.87 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=28.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHH-HHHhhhhh--cCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPVV--EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ-~~~i~~il--~g~dvii~apTGsGKTl~~ 322 (675)
.+|+++.-.+++.+.+...-. .+. ..++..+- -.+.+++.||+|+|||..+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 467777666666655553210 000 11222211 1234899999999999854
No 294
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=49.92 E-value=7.8 Score=39.99 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.8
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
-++|+||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478899999999986543
No 295
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.79 E-value=8.4 Score=34.71 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=16.2
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
+++++.|+.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999997644
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=49.62 E-value=8.8 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+++.|+.|+|||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999999543
No 297
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.59 E-value=4.7 Score=40.23 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=25.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHH-HHHhhhh--hcCCCEEEEccCCCCchHHH
Q 005837 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPV--VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 268 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ-~~~i~~i--l~g~dvii~apTGsGKTl~~ 322 (675)
.+|++.+-.+++.+.+...= ..|+. .+++..+ .-.+.+++.||.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 46777776666666665320 01111 1222221 11234999999999999853
No 298
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=49.46 E-value=21 Score=37.92 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=39.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCH
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp 404 (675)
+.++||+||++.-++.+++.+++. ++++..++|+..............+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999999888875 3567888876433222222345689999996
No 299
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=49.37 E-value=20 Score=38.24 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
.+.+++.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999864
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=49.32 E-value=7.7 Score=35.19 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+++.|+.|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999999643
No 301
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=49.11 E-value=12 Score=38.62 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=19.4
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQ 328 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~ 328 (675)
..|+-+++.|+.|+|||...+..+..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34677899999999999865544433
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.01 E-value=5.5 Score=36.43 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.|.-+.++||.|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46668899999999998543
No 303
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=48.99 E-value=12 Score=41.31 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.1
Q ss_pred CCCEEEEccCCCCchHHHHHHHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~llp~l~~l 330 (675)
..+++|.|.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999997655454444
No 304
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.98 E-value=3.1e+02 Score=30.62 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=63.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---hh-CCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+.+.+.+. ++.+..+.|+......... +. ...+|+|+|.- + ...+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l-~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L-REGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C-STTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h-hCCcccCC
Confidence 559999999999999988888875 3456777877665443322 22 46899999851 2 33567888
Q ss_pred ceEEEEcCcccccCCccHHHHHHHHHhh
Q 005837 421 LRCAILDEVDILFNDEDFEVALQSLISS 448 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~~~~~~l~~il~~ 448 (675)
++++|+-+++...--.+....++.+-+.
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 9999999987653112334455555443
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=48.68 E-value=20 Score=35.36 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred hhhcCCCEEEEccCCCCchHHHHHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~llp~ 326 (675)
-+..|.-+++.|++|+|||+.....+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34567889999999999998654433
No 306
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=48.32 E-value=54 Score=34.24 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-cc-----cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-AS-----RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~-----~G 601 (675)
...++||.|+++.-+.+..+.+.+... .....+..+||+....++..... . .+ |+|+|.- +. ..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~---~--~~----ivv~T~~~l~~~~~~~~ 120 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAWA---R--AK----VIVATPQTIENDLLAGR 120 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBC-SCGGGEEEECSCSCHHHHHHHHH---H--CS----EEEECHHHHHHHHHTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhC-cchhheEEeeCCcchhhhhhhcc---C--CC----EEEecHHHHHHHHhcCC
Confidence 467899999999999999999988641 12247889999998887655433 2 23 9999952 22 13
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+...++++||.
T Consensus 121 ~~~~~~~~vIi 131 (494)
T 1wp9_A 121 ISLEDVSLIVF 131 (494)
T ss_dssp CCTTSCSEEEE
T ss_pred cchhhceEEEE
Confidence 55667777775
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=48.26 E-value=9.8 Score=35.04 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+..+++.|+.|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456789999999999996533
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.21 E-value=9.9 Score=34.50 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.2
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.|+.|||||..+-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 689999999999996543
No 309
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=48.00 E-value=48 Score=34.10 Aligned_cols=76 Identities=8% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----cc-cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----AS-RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~-~G 601 (675)
...++||.|+++.-+.++++.++.+... .++.+..++|+....+.... + .+..+ |+|+|.- +. ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~-~~~~~----Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILR---L-NETVH----ILVGTPGRVLDLASRKV 158 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHH---T-TSCCS----EEEECHHHHHHHHHTTC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHH---h-cCCCC----EEEEchHHHHHHHHhCC
Confidence 3457999999999999999999887633 24678888998776543322 1 23334 9999942 22 33
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
.++.++++||.
T Consensus 159 ~~~~~~~~vIi 169 (400)
T 1s2m_A 159 ADLSDCSLFIM 169 (400)
T ss_dssp SCCTTCCEEEE
T ss_pred cccccCCEEEE
Confidence 56777888775
No 310
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.90 E-value=9.6 Score=39.62 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
..++++.||+|+|||..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.82 E-value=9.8 Score=35.79 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.6
Q ss_pred hhhcCCCEEEEccCCCCchHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~ 322 (675)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4566888899999999999853
No 312
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.79 E-value=9.1 Score=35.57 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+++.|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45678999999999999653
No 313
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=47.52 E-value=14 Score=38.40 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQ 328 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~ 328 (675)
..++-+++.+++|+|||..++-.+.+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34677899999999999976544443
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=47.52 E-value=8.3 Score=35.37 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.0
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.|++|||||+.+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999999654
No 315
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=47.50 E-value=64 Score=33.25 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----cccc-c
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASR-G 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~-G 601 (675)
...++||.++++.-+.++++.++.++. ..++.+..++|+....+....+. .+ .+ |+|+|. .+.. .
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~---~~-~~----ivv~Tp~~l~~~l~~~~ 174 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLD---YG-QH----VVAGTPGRVFDMIRRRS 174 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCEEEECTTSCHHHHHHHHH---HC-CS----EEEECHHHHHHHHHTTS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhc-cCCeEEEEEECCCCHHHHHHHhh---cC-CC----EEEcCHHHHHHHHHhCC
Confidence 456899999999999999999988763 33477888899987766554332 22 24 999994 2223 4
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
++...+++||.
T Consensus 175 ~~~~~~~~vVi 185 (410)
T 2j0s_A 175 LRTRAIKMLVL 185 (410)
T ss_dssp SCCTTCCEEEE
T ss_pred ccHhheeEEEE
Confidence 56667887775
No 316
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=47.41 E-value=9.9 Score=36.45 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=16.5
Q ss_pred hhcCCCEEEEccCCCCchHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~ 322 (675)
+..|+-+++.||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778899999999999953
No 317
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=46.98 E-value=8.8 Score=38.53 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999998543
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.88 E-value=8.8 Score=35.86 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+.-+++.|+.|+|||..+-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466788999999999986533
No 319
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=46.87 E-value=10 Score=39.45 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..+++|.| ++.-|.||||||.+.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35666778876 566789999999864
No 320
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.30 E-value=1.3e+02 Score=25.02 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=33.5
Q ss_pred eEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCC
Q 005837 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584 (675)
Q Consensus 532 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~ 584 (675)
.+||....+-...+...++..+ +.+..++++.+.+.|.+-++.|....
T Consensus 5 fvvfssdpeilkeivreikrqg-----vrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-----VRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCC-----eEEEEEecCchHHHHHHHHHHHHHcC
Confidence 4566665555555555555544 78888888888888888888887654
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=46.22 E-value=10 Score=35.41 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
.-++++|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999653
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=46.08 E-value=10 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
...+++.|++|||||...-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999999653
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.07 E-value=9.5 Score=40.34 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 367899999999986543
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.92 E-value=7.7 Score=37.21 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=12.6
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..|+-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677889999999999854
No 325
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=45.65 E-value=23 Score=37.76 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=44.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHhhCCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
+.++||.||+++-+..+++.+++. ++.+..++|...............+|+|+|.- + ..-+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v-----~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATDI-----A-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESSS-----T-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECCh-----h-heeeccC-ceEE
Confidence 347999999999999999888875 35677788744333222223346899999952 2 2345666 7777
Q ss_pred E
Q 005837 425 I 425 (675)
Q Consensus 425 V 425 (675)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 326
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=45.55 E-value=15 Score=44.65 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=31.6
Q ss_pred EEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHHHHHHHHH
Q 005837 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (675)
Q Consensus 308 vii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q~~~~l~~ 367 (675)
-+|.|..|||||.+.+--+...+.+. ..+.++|+|||... ..++.+++.+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~---------~~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA---------PFGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC---------TTSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC---------CCCCcEEEEecCcc-cHHHHHHHHH
Confidence 37889999999998665555444432 23458999998763 2334444433
No 327
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.52 E-value=11 Score=35.46 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.9
Q ss_pred hcCCCEEEEccCCCCchHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp 325 (675)
..|.-+++.|++|+|||..+...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHH
Confidence 34677899999999999865443
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.50 E-value=7.6 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=17.7
Q ss_pred hhhhcCCCEEEEccCCCCchHHHH
Q 005837 300 PPVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 300 ~~il~g~dvii~apTGsGKTl~~l 323 (675)
+.+..+.-+.+.|++|||||+.+-
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHH
Confidence 334445668899999999998543
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=45.43 E-value=9.4 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.8
Q ss_pred CCEEEEccCCCCchHH
Q 005837 306 KSCILADQSGSGKTLA 321 (675)
Q Consensus 306 ~dvii~apTGsGKTl~ 321 (675)
+-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 330
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.18 E-value=16 Score=36.91 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+.-+.++||+|+|||+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4566788999999999954
No 331
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=44.71 E-value=15 Score=38.08 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677788876 556789999999864
No 332
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=44.58 E-value=2.6e+02 Score=31.23 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=67.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---hh-CCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l~-~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++..+..+.+.+.+.+ +.+..++|+......... +. ...+|+|+|.- + ...+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g-----i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG-----IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-----CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-----CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h-hcCccCCC
Confidence 4599999999999999988888753 456777877655443322 33 45899999842 1 33567888
Q ss_pred ceEEEEcCcccccCCccHHHHHHHHHhhCCC-CccEEEEecCCC
Q 005837 421 LRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLP 463 (675)
Q Consensus 421 i~~IVIDEaH~l~~~~~~~~~l~~il~~~~~-~~qiI~lSAT~~ 463 (675)
++++|+=+++...--.+....++.+-+.-.. ....+.+-....
T Consensus 508 v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 508 VSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp EEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 9999998876542112334445555433222 234444443333
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=44.29 E-value=13 Score=33.49 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
+.+++.|+.|||||.+.-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3588999999999996543
No 334
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=44.17 E-value=14 Score=37.94 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|+||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34555677866 566789999999864
No 335
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.12 E-value=19 Score=34.78 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.5
Q ss_pred CEEEEccCCCCchHHHHHHHHHH
Q 005837 307 SCILADQSGSGKTLAYLLPVIQR 329 (675)
Q Consensus 307 dvii~apTGsGKTl~~llp~l~~ 329 (675)
++++.++.|+|||...+-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58889999999999765444433
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.98 E-value=11 Score=34.45 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999999653
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=43.84 E-value=14 Score=33.80 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
..+++.|+.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3588999999999996543
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.83 E-value=10 Score=35.37 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+.-+++.|+.|||||...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34568899999999999653
No 339
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.62 E-value=10 Score=37.84 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999998654
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.44 E-value=12 Score=35.34 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.8
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999996543
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=43.43 E-value=12 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-+++.||+|+|||+..-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999999543
No 342
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=43.38 E-value=12 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=14.8
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999996543
No 343
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.03 E-value=22 Score=46.83 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCChHHH-HH---HhhhhhcCCCEEEEccCCCCchHHHHHH
Q 005837 277 DYMIESLKRQNFLRPSQIQ-AM---AFPPVVEGKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 277 ~~l~~~l~~~g~~~~~~iQ-~~---~i~~il~g~dvii~apTGsGKTl~~llp 325 (675)
+.+.+.+.+.++. +.+.+ .+ ....+...+.++++||||||||.++-..
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 4455666666664 33433 22 2334445678999999999999987543
No 344
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=43.01 E-value=14 Score=38.16 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777888876 456789999999875
No 345
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=42.80 E-value=13 Score=38.29 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=18.5
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455667766 566789999999874
No 346
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=42.76 E-value=18 Score=33.79 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=39.9
Q ss_pred hHHHHHHhhhhhcC--CCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcHHHHHH
Q 005837 292 SQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (675)
Q Consensus 292 ~~iQ~~~i~~il~g--~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr~La~Q 360 (675)
.+-|..++..++.. +-.++.++-|++|+...+--++....+ .|-++.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----------cCeEEEEEcCchHHHHH
Confidence 35688888887653 456778999999998754443333332 25589999999865553
No 347
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=42.67 E-value=47 Score=38.38 Aligned_cols=77 Identities=5% Similarity=-0.035 Sum_probs=55.8
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-cc-----
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-RA----- 598 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-~~----- 598 (675)
....+..++|.++++.-|.+.++.+..+.. ..++.+..+.|+++..+|.... . .+ |+++|+ -+
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~-~lgl~v~~i~gg~~~~~r~~~~---~---~d----Iv~gTpgrlgfD~L 188 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFE-FLGLTVGLNLNSMSKDEKREAY---A---AD----ITYSTNNELGFDYL 188 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHH-HTTCCEEECCTTSCHHHHHHHH---H---SS----EEEEEHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHhc---C---CC----EEEECchhhhHHHH
Confidence 334566899999999999999998887653 3358899999999987765542 1 34 999996 22
Q ss_pred c-------ccCCCCCcCEEEE
Q 005837 599 S-------RGIDFAGVDHVVL 612 (675)
Q Consensus 599 ~-------~GiDip~v~~VI~ 612 (675)
. ..++...++++|.
T Consensus 189 ~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 189 RDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp HHTTCSSGGGCCCCCCCEEEE
T ss_pred HHhhhcchhhhcccCCCEEEE
Confidence 1 1356677887765
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.64 E-value=12 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999653
No 349
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=42.51 E-value=14 Score=39.12 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.5
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455677765 566789999999874
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=42.41 E-value=12 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||.+.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999999653
No 351
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.36 E-value=21 Score=47.51 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHh---hhhhcCCCEEEEccCCCCchHHHHH
Q 005837 277 DYMIESLKRQNFLRPSQIQAMAF---PPVVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 277 ~~l~~~l~~~g~~~~~~iQ~~~i---~~il~g~dvii~apTGsGKTl~~ll 324 (675)
..+.+.+.++|+..--.+-.+++ ..+....-++++||||||||.|+-.
T Consensus 875 ~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 875 KKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 45566667777754333333333 3344566789999999999998754
No 352
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=42.29 E-value=13 Score=38.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.7
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555677766 566789999999864
No 353
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=42.26 E-value=18 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=18.5
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVI 327 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l 327 (675)
..+.-++|.+++|+|||..++-.+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3457789999999999986544333
No 354
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=42.22 E-value=12 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=18.6
Q ss_pred hcCCCEEEEccCCCCchHHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~ 326 (675)
..|.-+++.||+|+|||......+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHH
Confidence 356788999999999998654433
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=42.09 E-value=13 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.4
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
..+.+.|++|||||+.+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999996543
No 356
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.00 E-value=20 Score=36.31 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.9
Q ss_pred CEEEEccCCCCchHH
Q 005837 307 SCILADQSGSGKTLA 321 (675)
Q Consensus 307 dvii~apTGsGKTl~ 321 (675)
-+++.|+.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999984
No 357
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=41.93 E-value=67 Score=33.04 Aligned_cols=77 Identities=8% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----ccc-cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RAS-RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~-~G 601 (675)
...++||.++++.-+.++++.++.++.. .+..+..++|+...... ...+..+..+ |+|+|. .+. ..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~----iiv~T~~~l~~~l~~~~ 178 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAE---VQKLQMEAPH----IIVGTPGRVFDMLNRRY 178 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHH---HHHHTTTCCS----EEEECHHHHHHHHHHTS
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHH---HHHHhcCCCC----EEEECHHHHHHHHHcCC
Confidence 4567999999999999999999887532 23667777887654443 3344445555 999994 222 23
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
++...+++||.
T Consensus 179 ~~~~~~~~vVi 189 (414)
T 3eiq_A 179 LSPKYIKMFVL 189 (414)
T ss_dssp SCSTTCCEEEE
T ss_pred cccccCcEEEE
Confidence 45666777765
No 358
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=41.90 E-value=15 Score=38.35 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|+||||||.+.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34555677866 556789999999864
No 359
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.84 E-value=15 Score=38.82 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.8
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677788876 456789999999875
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.80 E-value=13 Score=35.10 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+..+++.|+.|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35689999999999996543
No 361
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=41.78 E-value=14 Score=38.56 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34556677866 556789999999764
No 362
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=41.75 E-value=15 Score=38.18 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=18.4
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445677766 566789999999864
No 363
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.73 E-value=28 Score=37.69 Aligned_cols=75 Identities=12% Similarity=0.286 Sum_probs=51.3
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-cc----cc-C
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-AS----RG-I 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~----~G-i 602 (675)
..++||.|+++.-+.+..+.++..... .++.+..+||+.+...+...+. . ..+ |+|+|.- +. .+ +
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~--~--~~~----i~v~T~~~l~~~~~~~~~ 122 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER-LGYNIASISGATSDSVSVQHII--E--DND----IIILTPQILVNNLNNGAI 122 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT-TTCCEEEECTTTGGGSCHHHHH--H--HCS----EEEECHHHHHHHHHTSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc-CCcEEEEEcCCCcchhhHHHHh--c--CCC----EEEECHHHHHHHHhcCcc
Confidence 678999999999999999988887532 2478899999986554433221 1 133 9999952 22 22 3
Q ss_pred -CCCCcCEEEE
Q 005837 603 -DFAGVDHVVL 612 (675)
Q Consensus 603 -Dip~v~~VI~ 612 (675)
.+.++++||.
T Consensus 123 ~~~~~~~~vVi 133 (555)
T 3tbk_A 123 PSLSVFTLMIF 133 (555)
T ss_dssp CCGGGCSEEEE
T ss_pred cccccCCEEEE
Confidence 5666788776
No 364
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.73 E-value=13 Score=37.93 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999854
No 365
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=41.71 E-value=16 Score=37.57 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.2
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4566778876 566789999999864
No 366
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=41.68 E-value=16 Score=37.91 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.4
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455677766 566789999999864
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.66 E-value=13 Score=35.25 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.8
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.||+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986544
No 368
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.66 E-value=15 Score=38.30 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.6
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455677866 566789999999864
No 369
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=41.63 E-value=61 Score=32.56 Aligned_cols=75 Identities=8% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-cc-----cc
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-AS-----RG 601 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~-----~G 601 (675)
.+.++||.++++.-+.++++.+...... ..+.+..++|+....+....+ . ..+ |+|+|.- +. ..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---~--~~~----iiv~T~~~l~~~~~~~~ 142 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKAL---K--NAN----IVVGTPGRILDHINRGT 142 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHH---H--TCS----EEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhc---C--CCC----EEEecHHHHHHHHHcCC
Confidence 4668999999999999999999887532 346788889988766554433 2 234 9999952 11 23
Q ss_pred CCCCCcCEEEE
Q 005837 602 IDFAGVDHVVL 612 (675)
Q Consensus 602 iDip~v~~VI~ 612 (675)
+++.++++||.
T Consensus 143 ~~~~~~~~iIi 153 (367)
T 1hv8_A 143 LNLKNVKYFIL 153 (367)
T ss_dssp SCTTSCCEEEE
T ss_pred cccccCCEEEE
Confidence 55667777775
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=41.58 E-value=14 Score=35.03 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.9
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
..+++.|+.|||||...-.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp CCEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5689999999999996543
No 371
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=41.47 E-value=15 Score=37.93 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.6
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4555677866 566789999999864
No 372
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.37 E-value=15 Score=34.53 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=20.7
Q ss_pred HHHHHHhhhhhcCCCEEEEccCCCCchHHHH
Q 005837 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 293 ~iQ~~~i~~il~g~dvii~apTGsGKTl~~l 323 (675)
+.+.... .+..+..+++.|+.|+|||...-
T Consensus 14 ~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 14 RSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp HHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred HHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 3444442 23456778899999999998654
No 373
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=41.34 E-value=7.4 Score=38.17 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999998653
No 374
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=41.33 E-value=15 Score=38.12 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=18.7
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4555677866 566789999999864
No 375
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=41.15 E-value=16 Score=37.95 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|+||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45566778876 466789999999874
No 376
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.14 E-value=13 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+.-+.|.||+|||||+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556778999999999843
No 377
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=41.11 E-value=49 Score=38.23 Aligned_cols=75 Identities=4% Similarity=-0.141 Sum_probs=54.1
Q ss_pred CCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----cc
Q 005837 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A-----SR 600 (675)
Q Consensus 527 ~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~-----~~ 600 (675)
..+.+++|.++|+.-|.+.++.+..+.. ..++.+..+.|+++...|.... ..+ |+|+|.- + ..
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~-~lgl~v~~i~GG~~~~~r~~~~------~~d----IvvgTpgrl~fDyLrd 181 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFE-FLGLTVGINLPGMPAPAKREAY------AAD----ITYGTNNEYGFDYLRD 181 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHH-HTTCCEEECCTTCCHHHHHHHH------HSS----EEEEEHHHHHHHHHHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHH-hcCCeEEEEeCCCCHHHHHHhc------CCC----EEEECCchhhHHHHHh
Confidence 4456899999999999999998887753 2358899999999987655433 134 9999963 2 12
Q ss_pred c-------CCCCCcCEEEE
Q 005837 601 G-------IDFAGVDHVVL 612 (675)
Q Consensus 601 G-------iDip~v~~VI~ 612 (675)
+ +...++.++|.
T Consensus 182 ~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 182 NMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp TTCSSGGGCCCCSCCEEEE
T ss_pred hhhccHhHhcccCCcEEEE
Confidence 2 45567777765
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=41.03 E-value=14 Score=37.04 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
.-++++||+|+|||..+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45888999999999964
No 379
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=41.00 E-value=38 Score=36.49 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.2
Q ss_pred HhhhhhcCCCEEEEccCCCCchHHHHH
Q 005837 298 AFPPVVEGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 298 ~i~~il~g~dvii~apTGsGKTl~~ll 324 (675)
.+..+..|+.+++.++.|.|||.....
T Consensus 144 ~L~pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 144 LLAPYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp HHSCEETTCEEEEECCSSSCHHHHHHH
T ss_pred HHhhhccCCEEEEECCCCCCccHHHHH
Confidence 344556788999999999999986544
No 380
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=40.97 E-value=71 Score=32.74 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=52.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHH---h-hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~---l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+++.+.+. ++.+..++|+......... + ....+|+|+|.- + ...+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----C-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----c-ccCCCccC
Confidence 458999999999999999988875 3457788888766554322 2 245889999952 2 34567888
Q ss_pred ceEEEEcC
Q 005837 421 LRCAILDE 428 (675)
Q Consensus 421 i~~IVIDE 428 (675)
+++||.-.
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 98888544
No 381
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=40.88 E-value=16 Score=37.95 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|+||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34566678876 456789999999864
No 382
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=40.87 E-value=73 Score=31.89 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHh----hCCCcEEEeCHHHHHHHHHhccccccc
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l----~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 420 (675)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+.......+ ....+|+|+|.- . ...+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a-~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----A-ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----T-TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----h-hcCccccc
Confidence 458999999999999888887654 46688899987765543322 346899999941 2 23567778
Q ss_pred ceEEEE
Q 005837 421 LRCAIL 426 (675)
Q Consensus 421 i~~IVI 426 (675)
++++|.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.82 E-value=14 Score=34.11 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+.-+++.|+.|||||...-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999999653
No 384
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.80 E-value=11 Score=35.76 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=17.3
Q ss_pred hhcCCCEEEEccCCCCchHHHH
Q 005837 302 VVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 302 il~g~dvii~apTGsGKTl~~l 323 (675)
+..|.-+.+.||+|+|||....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3456778999999999998543
No 385
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=40.68 E-value=13 Score=38.58 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556677866 566789999999864
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.36 E-value=15 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.5
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
-.+|+|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999854
No 387
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=40.32 E-value=1.9e+02 Score=30.74 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=49.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHH---Hh-hCCCcEEEeCHHHHHHHHHhcccccccc
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLINL 421 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~---~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i 421 (675)
...+|++..+.-+..+.+.+.+.+ .++..+.|+........ .+ ....+|+|+|+..+ ...+++..+
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKNL 417 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCSE
T ss_pred CCeEEEEecHHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcccccccC
Confidence 345555555666666666666542 36788888876554322 22 34679999997755 335678889
Q ss_pred eEEEEcCcc
Q 005837 422 RCAILDEVD 430 (675)
Q Consensus 422 ~~IVIDEaH 430 (675)
+++|+....
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998876
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=40.09 E-value=13 Score=33.79 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.|..+++.|+.|||||.+.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999999653
No 389
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=40.06 E-value=14 Score=38.61 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 44556677866 566789999999864
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=40.01 E-value=16 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
...+++.|+.|||||+..-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999996543
No 391
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.00 E-value=12 Score=33.37 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.0
Q ss_pred CEEEEccCCCCchHH
Q 005837 307 SCILADQSGSGKTLA 321 (675)
Q Consensus 307 dvii~apTGsGKTl~ 321 (675)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367899999999985
No 392
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=39.99 E-value=15 Score=34.13 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.2
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.|+.|||||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999999653
No 393
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.89 E-value=15 Score=32.89 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.3
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999999653
No 394
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=39.88 E-value=15 Score=33.90 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=27.1
Q ss_pred cccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEec-CCCHHHHH
Q 005837 418 LINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTA-TLPVEIYN 468 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSA-T~~~~v~~ 468 (675)
..+-+++|+||++-+.. +..+...+..++.. ....+|+.|- |-......
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHH
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHH
Confidence 34567999999764432 44556666666654 2223455543 44444333
No 395
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=39.81 E-value=44 Score=36.13 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-cc----cc-C
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-AS----RG-I 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~----~G-i 602 (675)
..++||.|+++.-+.+..+.++.+.... ++.+..+||+.+...+...+. .. .+ |+|+|.- +. .+ +
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~--~~----i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI--ED--SD----IIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHHH--HH--CS----EEEECHHHHHHHHHSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHhh--CC--CC----EEEECHHHHHHHHHhCcc
Confidence 6789999999999999999988875321 378899999986655433222 11 33 9999953 22 22 3
Q ss_pred -CCCCcCEEEE
Q 005837 603 -DFAGVDHVVL 612 (675)
Q Consensus 603 -Dip~v~~VI~ 612 (675)
.+..+++||.
T Consensus 126 ~~~~~~~~vVi 136 (556)
T 4a2p_A 126 TSLSIFTLMIF 136 (556)
T ss_dssp CCSTTCSEEEE
T ss_pred cccccCCEEEE
Confidence 5667888776
No 396
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.77 E-value=14 Score=34.44 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.3
Q ss_pred EEEEccCCCCchHHHH
Q 005837 308 CILADQSGSGKTLAYL 323 (675)
Q Consensus 308 vii~apTGsGKTl~~l 323 (675)
++|.|++|||||.-+.
T Consensus 2 ilV~Gg~~SGKS~~A~ 17 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE 17 (180)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 6889999999997543
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=39.72 E-value=15 Score=33.99 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999999643
No 398
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=39.71 E-value=24 Score=33.83 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=48.2
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-----ccc---
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-----ASR--- 600 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-----~~~--- 600 (675)
+.++||.++++.-+.++++.++++... .++.+..++++.....+ ......+ ...|+|+|.- +..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 169 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKK---FGPKSSK----KFDILVTTPNRLIYLLKQDPP 169 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTT---TSTTSCC----CCCEEEECHHHHHHHHHSSSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHH---hhhhhcC----CCCEEEECHHHHHHHHHhCCC
Confidence 447999999999999999999887532 23666666665221111 1111122 3449999942 112
Q ss_pred cCCCCCcCEEEE
Q 005837 601 GIDFAGVDHVVL 612 (675)
Q Consensus 601 GiDip~v~~VI~ 612 (675)
.+++.++++||.
T Consensus 170 ~~~~~~~~~lVi 181 (245)
T 3dkp_A 170 GIDLASVEWLVV 181 (245)
T ss_dssp SCCCTTCCEEEE
T ss_pred CcccccCcEEEE
Confidence 477888988876
No 399
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=39.61 E-value=12 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999854
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.48 E-value=21 Score=36.98 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHHH
Q 005837 304 EGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ 322 (675)
.+.-+.++||+|+|||+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3566888999999999954
No 401
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=39.35 E-value=13 Score=33.64 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=12.1
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+..+++.|+.|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999996543
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.26 E-value=15 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
.+-+++.||+||||++.+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45678899999999986544
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=39.21 E-value=16 Score=35.04 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
...+++.|++|||||...-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999996543
No 404
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.98 E-value=55 Score=37.68 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c----ccc-C
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A----SRG-I 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~----~~G-i 602 (675)
..++||.|+++.-+.+..+.+++..... ++.+..+||+.+...+...+ .. ..+ |+|+|.- + ..+ +
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~---~~-~~~----Ivv~Tp~~l~~~l~~~~~ 366 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV---IE-DSD----IIVVTPQILVNSFEDGTL 366 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHH---HH-TCS----EEEECHHHHHHHHHSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHh---hC-CCC----EEEEchHHHHHHHHhccc
Confidence 6789999999999999999888875321 47899999998665543322 11 234 9999942 2 222 3
Q ss_pred -CCCCcCEEEE
Q 005837 603 -DFAGVDHVVL 612 (675)
Q Consensus 603 -Dip~v~~VI~ 612 (675)
.+.++++||.
T Consensus 367 ~~~~~~~~iVi 377 (797)
T 4a2q_A 367 TSLSIFTLMIF 377 (797)
T ss_dssp CCGGGCSEEEE
T ss_pred cccccCCEEEE
Confidence 5667788776
No 405
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=38.88 E-value=21 Score=33.61 Aligned_cols=76 Identities=7% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCC---CeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcc-----cccc
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKET---RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD-----RASR 600 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~---~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~-----~~~~ 600 (675)
+.++||.++++.-+.++++.+++...... .+.+..++|+.+..+..+ .+. . ...|+|+|. .+..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~----~~~Iiv~Tp~~l~~~l~~ 143 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KLN-V----QPHIVIGTPGRINDFIRE 143 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CCS-S----CCSEEEECHHHHHHHHHT
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---HcC-C----CCCEEEeCHHHHHHHHHc
Confidence 46799999999999999998887653221 367888898865433211 111 1 234999995 2222
Q ss_pred -cCCCCCcCEEEE
Q 005837 601 -GIDFAGVDHVVL 612 (675)
Q Consensus 601 -GiDip~v~~VI~ 612 (675)
.+++..+++||.
T Consensus 144 ~~~~~~~~~~lVi 156 (219)
T 1q0u_A 144 QALDVHTAHILVV 156 (219)
T ss_dssp TCCCGGGCCEEEE
T ss_pred CCCCcCcceEEEE
Confidence 356677887775
No 406
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=38.83 E-value=14 Score=33.83 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+..+++.|+.|+|||...-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 355688999999999996543
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.69 E-value=15 Score=34.27 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+.-+++.|+.|||||+..-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 456789999999999996543
No 408
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=38.68 E-value=13 Score=38.69 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=18.9
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566677866 556789999999864
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.68 E-value=15 Score=34.58 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999653
No 410
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=38.61 E-value=14 Score=38.77 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=17.2
Q ss_pred hhhhcCCC--EEEEccCCCCchHHH
Q 005837 300 PPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 300 ~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..++.|.| ++..|.||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44567766 556789999999864
No 411
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=38.28 E-value=17 Score=38.11 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.7
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++..|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4555677765 566789999999874
No 412
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=38.22 E-value=16 Score=33.91 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=14.0
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
.+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999965
No 413
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=38.08 E-value=16 Score=37.11 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
-.|+-+.|+||+|+|||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35778899999999999843
No 414
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.06 E-value=14 Score=34.50 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
+.-+.+.|++|||||+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445778999999999854
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.02 E-value=16 Score=34.04 Aligned_cols=17 Identities=35% Similarity=0.186 Sum_probs=13.9
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+.+.|+.|||||++.-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999999653
No 416
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.97 E-value=17 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+..+++.|+.|||||...-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 35688999999999996543
No 417
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=37.95 E-value=18 Score=34.03 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=23.8
Q ss_pred cceEEEEcCcccccCCc--cH--HHHHHHHHhhCCCCccEEEEecC
Q 005837 420 NLRCAILDEVDILFNDE--DF--EVALQSLISSSPVTAQYLFVTAT 461 (675)
Q Consensus 420 ~i~~IVIDEaH~l~~~~--~~--~~~l~~il~~~~~~~qiI~lSAT 461 (675)
.-.+|||||||.+.... .. ...+..+........++|++|..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 35689999999984211 11 12223333333445678877766
No 418
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=37.93 E-value=17 Score=38.93 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 44556678866 566789999999864
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.93 E-value=16 Score=34.00 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCCchHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~ll 324 (675)
.+.-+++.|+.|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999996543
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=37.88 E-value=16 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.7
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+.|.|++|||||.+.-+
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999996543
No 421
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=37.82 E-value=18 Score=37.81 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.5
Q ss_pred HhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 298 ~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
.+..++.|.| ++.-|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5677788876 556789999999864
No 422
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.70 E-value=17 Score=38.46 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred HHhhhhhcCCC--EEEEccCCCCchHHH
Q 005837 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 297 ~~i~~il~g~d--vii~apTGsGKTl~~ 322 (675)
..+..++.|.| ++..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667788876 566789999999864
No 423
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=37.66 E-value=17 Score=35.48 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+.|.||+|||||+..-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999999653
No 424
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=37.45 E-value=21 Score=38.39 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
..++++.||+|+|||..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999996543
No 425
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=37.45 E-value=57 Score=32.36 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=51.9
Q ss_pred CCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEcccc-----c-ccC
Q 005837 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA-----S-RGI 602 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~~-----~-~Gi 602 (675)
+.++||.++++.-+.++++.++++... .+..+..+||+.+..++... +.+ .+ |+|+|.-. . ..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~--~~----i~v~T~~~l~~~~~~~~~ 125 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINR---VRN--AD----IVVATPGRLLDLWSKGVI 125 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECTTSCHHHHHHH---HTT--CS----EEEECHHHHHHHHHTTSC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhh-cCCcEEEEECCcchHHHHhh---cCC--CC----EEEECHHHHHHHHHcCCc
Confidence 568999999999999999999876532 24678889999887655433 332 33 99999521 1 234
Q ss_pred CCCCcCEEEE
Q 005837 603 DFAGVDHVVL 612 (675)
Q Consensus 603 Dip~v~~VI~ 612 (675)
++..+++||.
T Consensus 126 ~~~~~~~iVi 135 (337)
T 2z0m_A 126 DLSSFEIVII 135 (337)
T ss_dssp CGGGCSEEEE
T ss_pred chhhCcEEEE
Confidence 5666777765
No 426
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.37 E-value=16 Score=33.85 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.8
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
.+.+.|+.|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999964
No 427
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=37.26 E-value=66 Score=37.40 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=55.8
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-c-----
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-A----- 598 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~----- 598 (675)
....+.+++|.++++.-|.+.++.+..+.. ..++.+..+.|+++..+|.... . .+ |+++|+- +
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~-~lGLsv~~i~gg~~~~~r~~~y---~---~D----IvygTpgrlgfDyL 216 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHR-FLGLQVGVILATMTPDERRVAY---N---AD----ITYGTNNEFGFDYL 216 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHH-HTTCCEEECCTTCCHHHHHHHH---H---SS----EEEEEHHHHHHHHH
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHhc---C---CC----EEEECchHhhHHHH
Confidence 334466899999999999999998887653 3458899999999987766543 1 34 9999962 2
Q ss_pred c-------ccCCCCCcCEEEE
Q 005837 599 S-------RGIDFAGVDHVVL 612 (675)
Q Consensus 599 ~-------~GiDip~v~~VI~ 612 (675)
. ..+....+.++|.
T Consensus 217 rD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 217 RDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp HHTTCSSGGGCCCCCCCEEEE
T ss_pred HhhhhccHhhhccCCCCEEEE
Confidence 1 1355667787775
No 428
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=37.23 E-value=22 Score=39.62 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.9
Q ss_pred hhhcCCCEEEEccCCCCchHHHH
Q 005837 301 PVVEGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 301 ~il~g~dvii~apTGsGKTl~~l 323 (675)
.+..+..+++.||+|+|||..+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 34567899999999999998653
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=37.18 E-value=13 Score=36.04 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999983
No 430
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.01 E-value=18 Score=40.38 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=14.5
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999843
No 431
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.83 E-value=20 Score=33.44 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=27.6
Q ss_pred cccceEEEEcCcccccC-CccHHHHHHHHHhhCCCCccEEEEecCC
Q 005837 418 LINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATL 462 (675)
Q Consensus 418 l~~i~~IVIDEaH~l~~-~~~~~~~l~~il~~~~~~~qiI~lSAT~ 462 (675)
....+++|+||+..+.. +..|...+..++... ..+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 46678999999866632 455777788887743 2345446664
No 432
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=36.39 E-value=18 Score=33.04 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999996543
No 433
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=36.27 E-value=14 Score=35.16 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCCChHHHHHHhhhhhcC----CCEEEEccCCCCchHHH
Q 005837 278 YMIESLKRQNFLRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAY 322 (675)
Q Consensus 278 ~l~~~l~~~g~~~~~~iQ~~~i~~il~g----~dvii~apTGsGKTl~~ 322 (675)
.+.+-|+-.++ .+-.. ...+..++.+ ..+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44455543332 22222 4444444443 35888999999999854
No 434
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=36.05 E-value=38 Score=38.30 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=46.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHh-hCCCcEEEeCHHHHHHHHHhcccccccceE
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~ 423 (675)
+.++||.||++.-++.+++.+++. ++++..++|... ......+ ....+|+|+|.- + ..-+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTdv-----~-e~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTDI-----S-EMGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECGG-----G-GTTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHHH-HHHHHHHHCCCceEEEECch-----h-hcceeeC-CcE
Confidence 458999999999999888888764 456788888422 2222333 346899999952 2 2244566 666
Q ss_pred EE
Q 005837 424 AI 425 (675)
Q Consensus 424 IV 425 (675)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 435
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=35.72 E-value=19 Score=33.07 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.1
Q ss_pred EEEEccCCCCchHHHHH
Q 005837 308 CILADQSGSGKTLAYLL 324 (675)
Q Consensus 308 vii~apTGsGKTl~~ll 324 (675)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999996543
No 436
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=35.37 E-value=28 Score=35.46 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
++-+.+.+++|+|||.....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45677889999999986543
No 437
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=35.35 E-value=79 Score=36.91 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=48.4
Q ss_pred HhCCCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc
Q 005837 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597 (675)
Q Consensus 525 ~~~~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~ 597 (675)
....+.+++|.++|+.-|.+.++.+..+. ...++.+..+.|+++..+|.... ..+ |+++|..
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~-~~lGLsv~~i~Gg~~~~~r~~ay------~~D----IvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVY-RGLGLSVGVIQHASTPAERRKAY------LAD----VTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHH-HTTTCCEEECCTTCCHHHHHHHH------TSS----EEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEEEeCCCCHHHHHHHc------CCC----EEEECch
Confidence 34456689999999999999999988876 34458899999999987766654 134 9999963
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.94 E-value=19 Score=34.26 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.7
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999996543
No 439
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=34.76 E-value=20 Score=38.43 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999865
No 440
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=34.68 E-value=19 Score=34.72 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCCchHHH
Q 005837 305 GKSCILADQSGSGKTLAY 322 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ 322 (675)
...+++.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=34.66 E-value=19 Score=37.33 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
-.+|+||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999865
No 442
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=34.40 E-value=24 Score=36.19 Aligned_cols=23 Identities=13% Similarity=-0.151 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCCCchHHHHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYLLPV 326 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~llp~ 326 (675)
.|.-+++.|++|+|||...+..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999998654433
No 443
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=34.17 E-value=26 Score=28.60 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
+..+++|||.+-..+...+..|...+ +.+..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G-----~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG-----IDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT-----CEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC-----CCeEEeCCCH
Confidence 35689999999888899999998876 5788888884
No 444
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=34.09 E-value=15 Score=35.51 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577888999999999984
No 445
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=33.97 E-value=27 Score=28.34 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.9
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
+..+++|||.+-..+...+..|+..+ +.+..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G-----~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNG-----VNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT-----CEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCC-----CCEEEecccH
Confidence 35689999999888899999998876 5788888884
No 446
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=33.94 E-value=48 Score=30.52 Aligned_cols=75 Identities=15% Similarity=0.337 Sum_probs=45.6
Q ss_pred CCCceEEEecchhhHHH-HHHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-cc----c-
Q 005837 528 PVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-AS----R- 600 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~-l~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~----~- 600 (675)
...++||+|+++.-+.+ +.+.+..+... .+.+..++|+.....+..... . ..+ |+|+|.- +. .
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~--~--~~~----i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV--K--SCD----IIISTAQILENSLLNL 150 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHH--H--HCS----EEEEEHHHHHHHHHC-
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhc--c--CCC----EEEECHHHHHHHHhcc
Confidence 35789999999998888 77777766433 367888888754332221111 1 233 9999953 21 1
Q ss_pred ------cCCCCCcCEEEE
Q 005837 601 ------GIDFAGVDHVVL 612 (675)
Q Consensus 601 ------GiDip~v~~VI~ 612 (675)
++.+.++++||.
T Consensus 151 ~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp ------CCCGGGCSEEEE
T ss_pred CcccccccchhcccEEEE
Confidence 255667777775
No 447
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=33.85 E-value=43 Score=34.09 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=12.7
Q ss_pred EEEEccCCCCchHHH
Q 005837 308 CILADQSGSGKTLAY 322 (675)
Q Consensus 308 vii~apTGsGKTl~~ 322 (675)
+-+.||+|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999854
No 448
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=33.75 E-value=2.2e+02 Score=29.37 Aligned_cols=89 Identities=9% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHHhhhhhcCCCEEEEccCCC-CchHHHHHHHHHHHHHHHhhccCCCCCCC-CEEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 005837 296 AMAFPPVVEGKSCILADQSGS-GKTLAYLLPVIQRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGV 373 (675)
Q Consensus 296 ~~~i~~il~g~dvii~apTGs-GKTl~~llp~l~~l~~~~~~~~~~~~~~~-~~vLVl~Ptr~La~Q~~~~l~~l~~~~~ 373 (675)
...+...+.++.++|.|.||+ |.-+|-.+. ..+ ..++++.-+..-..+....+...... .
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~~L~-----------------~~g~~~V~~~~r~~~~~~~~~~~l~~~~~~-~ 87 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEIF-----------------KRNPQKLHVVDISENNMVELVRDIRSSFGY-I 87 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHHHHH-----------------TTCCSEEEEECSCHHHHHHHHHHHHHHTCC-C
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHHHHH-----------------HCCCCEEEEEECCcchHHHHHHHHHHhcCC-C
Confidence 344556678899999999985 776654432 124 36666666555555555555553321 2
Q ss_pred CceEEEEECCcchHHHHHHhh--CCCcEEEe
Q 005837 374 PFRSMVVTGGFRQKTQLENLQ--EGVDVLIA 402 (675)
Q Consensus 374 ~~~v~~l~gg~~~~~~~~~l~--~~~~IlV~ 402 (675)
+..+..+.++.........+. .++|++|-
T Consensus 88 ~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih 118 (399)
T 3nzo_A 88 NGDFQTFALDIGSIEYDAFIKADGQYDYVLN 118 (399)
T ss_dssp SSEEEEECCCTTSHHHHHHHHHCCCCSEEEE
T ss_pred CCcEEEEEEeCCCHHHHHHHHHhCCCCEEEE
Confidence 245667777766655444332 46777773
No 449
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.72 E-value=20 Score=35.05 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.3
Q ss_pred CCEEEEccCCCCchHHHHH
Q 005837 306 KSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ll 324 (675)
.-++++|+.|||||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3588999999999996543
No 450
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=33.68 E-value=16 Score=38.06 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.1
Q ss_pred CEEEEccCCCCchHH
Q 005837 307 SCILADQSGSGKTLA 321 (675)
Q Consensus 307 dvii~apTGsGKTl~ 321 (675)
-.+|.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999995
No 451
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=33.36 E-value=22 Score=36.84 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.2
Q ss_pred cCCC--EEEEccCCCCchHHH
Q 005837 304 EGKS--CILADQSGSGKTLAY 322 (675)
Q Consensus 304 ~g~d--vii~apTGsGKTl~~ 322 (675)
.|.+ ++..|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 577899999999864
No 452
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=33.05 E-value=18 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999984
No 453
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=32.96 E-value=27 Score=28.98 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=30.0
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
+..+++|||.+-..+...+..|+..+ +.+..+.|++
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G-----~~v~~l~GG~ 89 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG-----LNIVDVEGGI 89 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT-----CCEEEETTHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC-----CCEEEEcCcH
Confidence 45689999999888889999998876 5788889984
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=32.85 E-value=18 Score=35.29 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+++.|++|||||..+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999999653
No 455
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=32.17 E-value=22 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.6
Q ss_pred CCEEEEccCCCCchHHHH
Q 005837 306 KSCILADQSGSGKTLAYL 323 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~l 323 (675)
..+.+.|+.|||||++.-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999999653
No 456
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=31.79 E-value=51 Score=35.05 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=45.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHhhcCCCCceEEEEECCcchHHHHHHh-hCCCcEEEeCHHHHHHHHHhcccccccceEE
Q 005837 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (675)
Q Consensus 346 ~~vLVl~Ptr~La~Q~~~~l~~l~~~~~~~~v~~l~gg~~~~~~~~~l-~~~~~IlV~Tp~~L~~~l~~~~~~l~~i~~I 424 (675)
.++||.||++.-++++++.+++. ++.+..+.+..... ....+ ....+|+|+|. .+ ...+++.. ++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~-~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRV 255 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHHH-HGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHHH-HHHhhccCCceEEEECC-----HH-HhCcCCCC-CEE
Confidence 47999999999999988888764 35577777765532 22233 34689999996 22 23455666 555
Q ss_pred E
Q 005837 425 I 425 (675)
Q Consensus 425 V 425 (675)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=31.55 E-value=17 Score=36.15 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 458
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.52 E-value=15 Score=41.44 Aligned_cols=74 Identities=15% Similarity=0.351 Sum_probs=48.7
Q ss_pred CCceEEEecchhhHHHH-HHHHHHhcccCCCeeEEEecCCCCHHHHHHHHHHHhcCCCCCCceEEEEccc-ccc------
Q 005837 529 VSKTIVFCNKIVTCRKV-ENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR-ASR------ 600 (675)
Q Consensus 529 ~~k~IVF~~s~~~~~~l-~~~L~~~~~~~~~~~v~~lhg~m~~~eR~~v~~~F~~g~~~~~~~VLVaT~~-~~~------ 600 (675)
..++||.++++.-+.+. .+.|++.... .+.+..+||+.+..++...+. +..+ |+|+|.- +..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~~----~~~~----Ilv~Tp~~L~~~l~~~~ 125 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV----KSCD----IIISTAQILENSLLNLE 125 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHHH----HSCS----EEEEEHHHHHHHTC---
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhhh----cCCC----EEEECHHHHHHHHhccc
Confidence 37899999999999999 9999887644 278899999976554433222 2344 9999852 222
Q ss_pred -----cCCCCCcCEEEE
Q 005837 601 -----GIDFAGVDHVVL 612 (675)
Q Consensus 601 -----GiDip~v~~VI~ 612 (675)
.+.+.++++||.
T Consensus 126 ~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 126 NGEDAGVQLSDFSLIII 142 (699)
T ss_dssp -----CCCGGGCSEEEE
T ss_pred cccccceecccCcEEEE
Confidence 246677888775
No 459
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=31.40 E-value=18 Score=35.34 Aligned_cols=19 Identities=32% Similarity=0.449 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577888999999999984
No 460
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=31.34 E-value=40 Score=26.97 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=28.8
Q ss_pred CceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCCC
Q 005837 530 SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569 (675)
Q Consensus 530 ~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m~ 569 (675)
.+++|||.+-..+...+..|+..+ +.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G-----~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG-----YEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT-----CCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC-----CcEEEEcccHH
Confidence 679999999888888999999876 45777888763
No 461
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=30.95 E-value=18 Score=34.74 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.1
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577888999999999984
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=30.95 E-value=19 Score=35.50 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577888999999999984
No 463
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=30.84 E-value=23 Score=38.92 Aligned_cols=20 Identities=35% Similarity=0.332 Sum_probs=16.9
Q ss_pred cCCCEEEEccCCCCchHHHH
Q 005837 304 EGKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~~l 323 (675)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998643
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=30.78 E-value=25 Score=32.77 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.4
Q ss_pred CEEEEccCCCCchHHHHH
Q 005837 307 SCILADQSGSGKTLAYLL 324 (675)
Q Consensus 307 dvii~apTGsGKTl~~ll 324 (675)
.+.+.|++|||||++.-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999996543
No 465
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=30.74 E-value=18 Score=34.64 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999983
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=30.62 E-value=18 Score=35.70 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3467788999999999984
No 467
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.59 E-value=30 Score=39.67 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
..++++.||+|+|||.++-.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999997643
No 468
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.41 E-value=25 Score=32.71 Aligned_cols=17 Identities=29% Similarity=0.059 Sum_probs=14.1
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
.-+.+.|+.|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999854
No 469
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=30.21 E-value=14 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=13.6
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-+.|++++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36688999999998543
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=29.95 E-value=19 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3567788999999999983
No 471
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.76 E-value=20 Score=34.79 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 472
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=29.71 E-value=35 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=29.0
Q ss_pred CCCceEEEecchhhHHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 528 PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 528 ~~~k~IVF~~s~~~~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
+..+++|||.+-..+...+..|.+.+ +.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G-----~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG-----IDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT-----CEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC-----CCEEEecChH
Confidence 35689999999888889999998876 5666778874
No 473
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=29.65 E-value=24 Score=38.14 Aligned_cols=17 Identities=41% Similarity=0.603 Sum_probs=14.9
Q ss_pred CCEEEEccCCCCchHHH
Q 005837 306 KSCILADQSGSGKTLAY 322 (675)
Q Consensus 306 ~dvii~apTGsGKTl~~ 322 (675)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 474
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.52 E-value=28 Score=32.75 Aligned_cols=17 Identities=41% Similarity=0.837 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-.++.|+.|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999999643
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=29.48 E-value=17 Score=35.25 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 476
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=29.35 E-value=20 Score=35.23 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 477
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.25 E-value=29 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
|.-+.|.||.|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4678899999999998654
No 478
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=29.07 E-value=24 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.5
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466778899999999984
No 479
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=29.00 E-value=30 Score=32.48 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.4
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
-.+|.||+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678899999999853
No 480
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=28.95 E-value=26 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|.-+.+.||.|+|||+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 481
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=28.94 E-value=32 Score=32.24 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCCchHHHH
Q 005837 305 GKSCILADQSGSGKTLAYL 323 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~l 323 (675)
+..+.+.+++|||||.+.-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999999653
No 482
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.74 E-value=27 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.3
Q ss_pred CEEEEccCCCCchHHH
Q 005837 307 SCILADQSGSGKTLAY 322 (675)
Q Consensus 307 dvii~apTGsGKTl~~ 322 (675)
-+.|+|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999864
No 483
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=28.52 E-value=27 Score=34.62 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
-+++.|+.|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999653
No 484
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=28.41 E-value=1e+02 Score=35.40 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=53.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHhh------cCCCCceEEEEECCcchHHHHHHhh---------CCCcEEEeCHHHHHH
Q 005837 345 SPRVVILAPTAELASQVLSNCRSLS------KCGVPFRSMVVTGGFRQKTQLENLQ---------EGVDVLIATPGRFMF 409 (675)
Q Consensus 345 ~~~vLVl~Ptr~La~Q~~~~l~~l~------~~~~~~~v~~l~gg~~~~~~~~~l~---------~~~~IlV~Tp~~L~~ 409 (675)
++.+||.+|++.-+..+.+.+.+.. ....++.+..++|+.....+...+. ...+|||+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 5689999999999999988887522 1124678889999987766544332 24689999962
Q ss_pred HHHhcccccccceEEEE
Q 005837 410 LIKEGILQLINLRCAIL 426 (675)
Q Consensus 410 ~l~~~~~~l~~i~~IVI 426 (675)
+.. .+++..+.+||-
T Consensus 379 -ae~-GidIp~v~~VId 393 (773)
T 2xau_A 379 -AET-SLTIDGIVYVVD 393 (773)
T ss_dssp -HHH-TCCCTTEEEEEE
T ss_pred -HHh-CcCcCCeEEEEe
Confidence 333 456778876663
No 485
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=28.35 E-value=27 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.435 Sum_probs=16.1
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.+.||.|+|||+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577788999999999994
No 486
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=28.32 E-value=22 Score=35.08 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999984
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=28.32 E-value=22 Score=35.23 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=16.0
Q ss_pred hcCCCEEEEccCCCCchHH
Q 005837 303 VEGKSCILADQSGSGKTLA 321 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~ 321 (675)
..|+-+.|.||.|+|||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999984
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=28.32 E-value=16 Score=37.10 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCCchHHH
Q 005837 303 VEGKSCILADQSGSGKTLAY 322 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~ 322 (675)
..|+-+.|+||+|+|||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35778999999999999943
No 489
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=28.27 E-value=22 Score=34.91 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567788999999999984
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=28.09 E-value=31 Score=32.92 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
+..+.+.|+.|||||.+.-+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999996543
No 491
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=27.90 E-value=30 Score=31.92 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.1
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+.|.|+.|||||..+-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999654
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.88 E-value=24 Score=36.01 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=17.3
Q ss_pred hcCCCEEEEccCCCCchHHHHHH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLP 325 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp 325 (675)
..+..+++.||+|+|||..++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 34566799999999999855443
No 493
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=27.81 E-value=22 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999984
No 494
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=27.78 E-value=40 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCCceEEEecchhh--HHHHHHHHHHhcccCCCeeEEEecCCC
Q 005837 528 PVSKTIVFCNKIVT--CRKVENILKRFDRKETRVRVLPFHAAL 568 (675)
Q Consensus 528 ~~~k~IVF~~s~~~--~~~l~~~L~~~~~~~~~~~v~~lhg~m 568 (675)
++.+++|||.+-.. +..++..|+..+ +.+..+.|++
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G-----~~v~~l~GG~ 107 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAG-----FEAYELAGAL 107 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHT-----CEEEEETTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcC-----CeEEEeCCcH
Confidence 35679999999777 788999999887 5688888884
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=27.73 E-value=23 Score=34.97 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 467788999999999984
No 496
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=27.67 E-value=22 Score=34.75 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCCchHH
Q 005837 304 EGKSCILADQSGSGKTLA 321 (675)
Q Consensus 304 ~g~dvii~apTGsGKTl~ 321 (675)
.|+-+.+.||.|+|||+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 497
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=27.46 E-value=16 Score=34.07 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.5
Q ss_pred EEEEccCCCCchHHHH
Q 005837 308 CILADQSGSGKTLAYL 323 (675)
Q Consensus 308 vii~apTGsGKTl~~l 323 (675)
+++.|+.|||||+..-
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6789999999998543
No 498
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=27.37 E-value=30 Score=33.47 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.2
Q ss_pred CEEEEccCCCCchHHHH
Q 005837 307 SCILADQSGSGKTLAYL 323 (675)
Q Consensus 307 dvii~apTGsGKTl~~l 323 (675)
.+.|.|+.|||||+..-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999999653
No 499
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=27.32 E-value=31 Score=33.37 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCCchHHHHH
Q 005837 305 GKSCILADQSGSGKTLAYLL 324 (675)
Q Consensus 305 g~dvii~apTGsGKTl~~ll 324 (675)
...+.+.||+|||||...-.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34688899999999996543
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=27.18 E-value=46 Score=41.76 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=28.8
Q ss_pred hcCCCEEEEccCCCCchHHHHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCcH
Q 005837 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (675)
Q Consensus 303 l~g~dvii~apTGsGKTl~~llp~l~~l~~~~~~~~~~~~~~~~~vLVl~Ptr 355 (675)
-.+..+++.+++|+|||..++..+.+.+.. +..++|+.-..
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~------------G~~vlYI~te~ 72 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE------------GKTCAFIDAEH 72 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT------------TCCEEEECTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhC------------CCceEEEEecC
Confidence 346889999999999999665555554432 33678886543
Done!