BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005838
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 32/181 (17%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALE-------L 511
L +Y V D + V VTGHSLGGA A L AL+ L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 512 SSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTV-PRLMGYC 570
SSS L +Y G PRVGN FA+ R VN RDI+P + P G+
Sbjct: 165 SSSNLF--------LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL 216
Query: 571 H 571
H
Sbjct: 217 H 217
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 32/181 (17%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALE-------L 511
L +Y V D + V VTGHSLGGA A L AL+ L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 512 SSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTV-PRLMGYC 570
SSS L +Y G PRVGN FA+ R VN RDI+P + P G+
Sbjct: 165 SSSNLF--------LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL 216
Query: 571 H 571
H
Sbjct: 217 H 217
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 32/181 (17%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALE-------L 511
L +Y V D + V VTGHSLGGA A L AL+ L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGL 164
Query: 512 SSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTV-PRLMGYC 570
SSS L +Y G PRVGN FA+ R VN RDI+P + P G+
Sbjct: 165 SSSNLF--------LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL 216
Query: 571 H 571
H
Sbjct: 217 H 217
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
Query: 515 QLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-------WRVVNPRDIIPTVPRL- 566
V +Y FG PR GN+ FA N+ + S +RV + D IP +P
Sbjct: 150 YDN------VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAE 203
Query: 567 MGYCH 571
GY H
Sbjct: 204 QGYAH 208
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
Query: 515 QLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-------WRVVNPRDIIPTVPRL- 566
V +Y FG PR GN+ FA N+ + S +RV + D IP +P
Sbjct: 150 YDN------VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAE 203
Query: 567 MGYCH 571
GY H
Sbjct: 204 QGYAH 208
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGHSLG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHSLGASMAALTAAQLSAT 149
Query: 515 QLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-------WRVVNPRDIIPTVPRL- 566
V +Y FG PR GN+ FA N+ + S +RV + D IP +P
Sbjct: 150 YDN------VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAD 203
Query: 567 MGYCH 571
GY H
Sbjct: 204 EGYAH 208
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 395 NESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQV 454
N TD I RD + ++ FRGT + L T+ L P P+ + +V
Sbjct: 43 NAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQ------CNDCEV 96
Query: 455 HSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSS 514
H G+ + SV D A + VTGH+LG ++A L A +LS++
Sbjct: 97 HGGYYIGWISVQDQVESLVKQQASQYPDYA-------LTVTGHALGASMAALTAAQLSAT 149
Query: 515 QLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-------WRVVNPRDIIPTVPRL- 566
V +Y FG PR GN+ FA N+ + S +RV + D IP +P
Sbjct: 150 YDN------VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAD 203
Query: 567 MGYCH 571
GY H
Sbjct: 204 EGYAH 208
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 492 VYVTGHSLGGALATLFALELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSW 551
V V GHSLG A+ L A+++ +L G ++ T Y FG PR+GN FA ++K+ D +
Sbjct: 139 VTVIGHSLGAAMGLLCAMDI---ELRMDGGLYKT-YLFGLPRLGNPTFASFVDQKIGDKF 194
Query: 552 R-VVNPRDIIPTV-PRLMGYCHVAQPVYLVAGELKDA 586
++N RD +PTV PR +GY H + V++ G A
Sbjct: 195 HSIINGRDWVPTVPPRALGYQHPSDYVWIYPGNSTSA 231
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 399 DTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGF 458
DT + R + + + + FRG+ +S ++ DL PV P + G +VH GF
Sbjct: 61 DTNAMVARGDSEKTIYIVFRGS--SSIRNWIADLTFVPVSYPP--VSG-----TKVHKGF 111
Query: 459 LSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALE-------L 511
L +Y V D + V VTGHSLGGA L AL+ L
Sbjct: 112 LDSYGEVQNELVATVL-------DQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGL 164
Query: 512 SSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTV-PRLMGYC 570
SSS L +Y G PRVG+ FA+ R VN RDI+P + P G+
Sbjct: 165 SSSNLF--------LYTQGQPRVGDPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFL 216
Query: 571 HVAQ 574
H +
Sbjct: 217 HAGE 220
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 492 VYVTGHSLGGALATLFALELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSW 551
V V GHSLG A+ L A+++ +L G ++ T Y FG PR+GN FA ++K+ D +
Sbjct: 140 VTVIGHSLGAAMGLLCAMDI---ELRMDGGLYKT-YLFGLPRLGNPTFASFVDQKIGDKF 195
Query: 552 R-VVNPRDIIPTV-PRLMGYCHVAQPVYLVAGELKDA 586
++N RD +PTV PR +GY H + V++ G A
Sbjct: 196 HSIINGRDWVPTVPPRALGYQHPSDYVWIYPGNSTSA 232
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 407 DSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQE-------VQVHSGFL 459
D + +VV+FRG+ + ++ T+L DF Q+ VHSGF
Sbjct: 69 DPTRKEIVVSFRGS--INIRNWLTNL--------------DFDQDDCSLTSGCGVHSGFQ 112
Query: 460 SAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSSQLAKQ 519
+A++ + + V GHSLGGA+ATL L +
Sbjct: 113 NAWNEISAAATAAVAKARKANP-------SFKVVSVGHSLGGAVATLAGANL------RI 159
Query: 520 GAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTVPRLM-GYCHVAQPVYL 578
G + +Y +GSPRVGN + A + + +RV N +D +P +P L+ GY H + P Y
Sbjct: 160 GGTPLDIYTYGSPRVGNTQLAAFVSNQAGGEFRVTNAKDPVPRLPPLIFGYRHTS-PEYW 218
Query: 579 VAGELKDAL 587
++G D +
Sbjct: 219 LSGSGGDKI 227
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 18/196 (9%)
Query: 398 TDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQEVQVHSG 457
+DT + R + + + FRGT S++ TD++ P + +VH+G
Sbjct: 61 SDTNGYVLRSDKQKTIYLVFRGTN--SFRSAITDIVFNFSDYKPVK-------GAKVHAG 111
Query: 458 FLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSSQLA 517
FLS+Y+ V + +A P K V VTGHSLGGA A L ++L +
Sbjct: 112 FLSSYEQVVNDYFPVVQ-----EQLTAHPTYK--VIVTGHSLGGAQALLAGMDLYQRE-P 163
Query: 518 KQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTV-PRLMGYCHVAQPV 576
+ ++++ G PRVGN FA R V+ RDI+P V P+ G+ H
Sbjct: 164 RLSPKNLSIFTVGGPRVGNPTFAYYVESTGIPFQRTVHKRDIVPHVPPQSFGFLHPGVES 223
Query: 577 YLVAGELKDALAAMEV 592
++ +G + E+
Sbjct: 224 WIKSGTSNVQICTSEI 239
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 392 FLDNESTDTQVAIWRDSAWRRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFK 449
F D+ D + D+ + +V++FRG+ +W +L DL D
Sbjct: 55 FEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEI----------NDIC 104
Query: 450 QEVQVHSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFAL 509
+ H GF S++ SV +D+ + V TGHSLGGALAT+
Sbjct: 105 SGCRGHDGFTSSWRSVADTLRQKV-------EDAVREHPDYRVVFTGHSLGGALATVAGA 157
Query: 510 ELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-WRVVNPRDIIPTV-PRLM 567
+L + + ++++G+PRVGN+ FA+ + + +R+ + DI+P + PR
Sbjct: 158 DLRGNGYD------IDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREF 211
Query: 568 GYCHVAQPVYLVAGEL 583
GY H + ++ +G L
Sbjct: 212 GYSHSSPEYWIKSGTL 227
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 392 FLDNESTDTQVAIWRDSAWRRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFK 449
F D+ D + D+ + +V++FRG+ +W +L DL D
Sbjct: 55 FEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEI----------NDIC 104
Query: 450 QEVQVHSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDKWHVYVTGHSLGGALATLFAL 509
+ H GF S++ SV +D+ + V TGH+LGGALAT+
Sbjct: 105 SGCRGHDGFTSSWRSVADTLRQKV-------EDAVREHPDYRVVFTGHALGGALATVAGA 157
Query: 510 ELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDS-WRVVNPRDIIPTV-PRLM 567
+L + + ++++G+PRVGN+ FA+ + + +R+ + DI+P + PR
Sbjct: 158 DLRGNGYD------IDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREF 211
Query: 568 GYCHVAQPVYLVAGEL 583
GY H + ++ +G L
Sbjct: 212 GYSHSSPEYWIKSGTL 227
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 36/192 (18%)
Query: 407 DSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQ-----EVQVHSGFLSA 461
D A +++ + RGT S +D+ TD+ + L + + + VH+GF+ +
Sbjct: 75 DHASKQIYLVIRGTH--SLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQS 132
Query: 462 YDSVXXXXXXXXXXXXGFKDDSA-GPLDKWHVYVTGHSLGGALATLFALELSSSQLAKQG 520
Y++ G K DS + + VTGHSLGGA A LF + L ++
Sbjct: 133 YNNTYNQI--------GPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINL---KVNGHD 181
Query: 521 AIFVTMYNFGSPRVGNKRFADVYNE--------------KVKDSWRVVNPRDIIPTVPRL 566
+ VT+ G P VGN FA+ ++ K + +R+ + DI+P VP
Sbjct: 182 PLVVTL---GQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFW 238
Query: 567 MGYCHVAQPVYL 578
GY H + V++
Sbjct: 239 DGYQHCSGEVFI 250
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 479 FKDDSAGPLDKWHVYVTGHSLGGALATLFALELSSSQLAKQGA-IFVTMYNFGSPRVGNK 537
F ++ GP K + VTGHS GGAL++ AL L Q K I ++ F P GN
Sbjct: 155 FLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKDIQGVKLSQNIDISTIPFAGPTAGNA 214
Query: 538 RFADVYNEKVKDSW-RVVNPRDIIP 561
FAD +++ + D R+ N DI+P
Sbjct: 215 DFADYFDDCLGDQCTRIANSLDIVP 239
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 392 FLDNESTDTQVAIWRDSAWRRLVVAFRGTEQTSWKDLRTDLMLAPVGLNPERIGGDFKQE 451
F D+ TDT I D +V+AFRG+ ++ D V NP G +
Sbjct: 55 FSDSTITDTAGYIAVDHTNSAVVLAFRGSYSV--RNWVADATF--VHTNPGLCDGCLAEL 110
Query: 452 VQVHSGFLSAYDSVXXXXXXXXXXXXGFKDDSAGPLDK-------WHVYVTGHSLGGALA 504
GF S++ V +DD L + + + V GHSLG A+A
Sbjct: 111 -----GFWSSWKLV--------------RDDIIKELKEVVAQNPNYELVVVGHSLGAAVA 151
Query: 505 TLFALELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSWRVVNPRDIIPTVP 564
TL A +L +G +Y + SPRVGN A Y +++R + D +P +P
Sbjct: 152 TLAATDLRG-----KGYPSAKLYAYASPRVGNAALAK-YITAQGNNFRFTHTNDPVPKLP 205
Query: 565 RL-MGYCHVAQPVYLV 579
L MGY HV+ P Y +
Sbjct: 206 LLSMGYVHVS-PEYWI 220
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 411 RRLVVAFRGTEQT-SW-KDLRTDLMLAPVGLNPERIGGDFKQEVQVHSGFLSAYDSVXXX 468
R +VV++RG+ Q W +D L+ N +I G+ +VQ+H G+ S Y S
Sbjct: 147 RDIVVSWRGSVQPLEWVEDFEFGLV------NAIKIFGERNDQVQIHQGWYSIYXSQDER 200
Query: 469 XXXXXXXXXGFKDDSAGPL------DKWHVYVTGHSLGGALATLFALELSSSQLAK---- 518
G L ++ + + GHSLG ALATL A ++ ++ +
Sbjct: 201 SPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRPKSR 260
Query: 519 -QGAIFVTMYNFGSPRVGNKRFADVYN--EKVKDSWRVVNPRDIIPTVPRLMGYCHVA 573
+ VT + F SPRVG+ F +++ E ++ R N D+IP P + GY V
Sbjct: 261 PDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIR-VLRTRNLPDVIPIYPPI-GYSEVG 316
>pdb|3LCR|A Chain A, Thioesterase From Tautomycetin Biosynthhetic Pathway
pdb|3LCR|B Chain B, Thioesterase From Tautomycetin Biosynthhetic Pathway
Length = 319
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 494 VTGHSLGGALATLFALELSSSQLAKQGAIFVTMYNF----GSPRVGNKRFADVYNEKVKD 549
+ GHS GG +A A EL + LA +G + + Y+F G P + F NE+ +
Sbjct: 152 LAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRP---EELFRSALNERFVE 208
Query: 550 SWRVVN 555
R+
Sbjct: 209 YLRLTG 214
>pdb|1M1U|A Chain A, An Isoleucine-Based Allosteric Switch Controls Affinity
And Shape Shifting In Integrin Cd11b A-Domain
Length = 195
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 555 NPRDIIPTVPRLMGYCHVAQPVYLVAGEL--------KDALAAMEVLKDGYQ-GDVIG 603
NPR ++ + +L+G H A + V EL K+A + V+ DG + GD +G
Sbjct: 74 NPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG 131
>pdb|3C6B|A Chain A, Reaction Product Of Paraoxon And S-Formylglutathione
Hydrolase W197i Mutant
pdb|4FLM|A Chain A, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
pdb|4FLM|B Chain B, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
Length = 299
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 492 VYVTGHSLGGALATLFALELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSW 551
V +TGH +GG A L+ S + K + F + N + +G K F E+ K W
Sbjct: 155 VAITGHXMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPIGQKAFKGYLGEE-KAQW 213
Query: 552 RVVNPRDIIPTV 563
+P +I +
Sbjct: 214 EAYDPCLLIKNI 225
>pdb|1PV1|A Chain A, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|B Chain B, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|C Chain C, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|D Chain D, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
Length = 299
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 492 VYVTGHSLGGALATLFALELSSSQLAKQGAIFVTMYNFGSPRVGNKRFADVYNEKVKDSW 551
V +TGHS+GG A L+ S + K + F + N + G K F E+ K W
Sbjct: 155 VAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEE-KAQW 213
Query: 552 RVVNPRDIIPTV 563
+P +I +
Sbjct: 214 EAYDPCLLIKNI 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,536,284
Number of Sequences: 62578
Number of extensions: 737319
Number of successful extensions: 1664
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1624
Number of HSP's gapped (non-prelim): 44
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)