Query 005842
Match_columns 674
No_of_seqs 289 out of 964
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 14:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3E-89 6.4E-94 703.1 22.4 257 227-519 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 1.1E-22 2.3E-27 231.9 17.2 143 32-183 23-169 (571)
3 PHA02790 Kelch-like protein; P 99.9 7.9E-22 1.7E-26 220.5 10.9 136 37-183 14-155 (480)
4 PHA02713 hypothetical protein; 99.8 8.1E-21 1.8E-25 216.1 11.0 136 34-180 14-155 (557)
5 PHA03098 kelch-like protein; P 99.8 1.6E-18 3.5E-23 195.0 12.9 101 42-153 6-108 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 7.1E-17 1.5E-21 143.6 9.2 104 38-149 3-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 4.9E-15 1.1E-19 124.2 7.0 89 47-143 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.2 2E-10 4.4E-15 125.8 12.2 182 36-268 105-294 (521)
9 KOG4350 Uncharacterized conser 99.2 1.9E-11 4.1E-16 131.1 4.1 132 37-173 36-171 (620)
10 KOG4591 Uncharacterized conser 98.7 2.2E-08 4.9E-13 99.6 6.6 133 25-176 43-183 (280)
11 KOG4682 Uncharacterized conser 98.4 3.4E-07 7.3E-12 99.1 7.3 130 39-184 63-198 (488)
12 KOG0783 Uncharacterized conser 98.2 2.5E-06 5.5E-11 98.6 6.2 127 44-188 557-698 (1267)
13 KOG0783 Uncharacterized conser 98.2 2.7E-06 5.9E-11 98.4 6.5 145 26-188 689-847 (1267)
14 PF11822 DUF3342: Domain of un 97.6 5.7E-05 1.2E-09 80.8 4.3 93 48-150 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.5 0.0039 8.5E-08 56.3 5.3 79 48-129 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 95.9 0.0043 9.4E-08 54.6 1.9 81 48-131 1-88 (94)
17 KOG2716 Polymerase delta-inter 95.8 0.034 7.5E-07 57.6 8.4 94 48-150 7-105 (230)
18 KOG3473 RNA polymerase II tran 95.3 0.042 9.2E-07 49.7 6.0 73 53-128 25-111 (112)
19 KOG2838 Uncharacterized conser 94.7 0.016 3.5E-07 61.0 2.1 86 41-128 126-217 (401)
20 PF03931 Skp1_POZ: Skp1 family 93.8 0.2 4.3E-06 41.4 6.2 55 48-106 3-58 (62)
21 KOG1724 SCF ubiquitin ligase, 93.2 0.15 3.2E-06 50.4 5.3 90 53-151 13-128 (162)
22 KOG2838 Uncharacterized conser 84.4 0.71 1.5E-05 49.0 2.7 56 56-114 262-330 (401)
23 KOG0511 Ankyrin repeat protein 77.6 2.2 4.8E-05 47.3 3.6 107 55-167 301-413 (516)
24 KOG3840 Uncharaterized conserv 77.6 11 0.00024 40.9 8.7 110 40-151 90-221 (438)
25 KOG2714 SETA binding protein S 72.9 7.4 0.00016 43.9 6.2 81 48-131 13-99 (465)
26 PF01466 Skp1: Skp1 family, di 71.5 3.1 6.7E-05 35.9 2.3 34 111-150 10-43 (78)
27 COG5201 SKP1 SCF ubiquitin lig 66.0 24 0.00053 34.0 7.2 93 48-150 4-122 (158)
28 KOG0511 Ankyrin repeat protein 65.5 1.1 2.3E-05 49.7 -2.1 92 34-130 136-232 (516)
29 PF01166 TSC22: TSC-22/dip/bun 58.6 20 0.00044 29.8 4.6 34 585-618 11-44 (59)
30 PF04508 Pox_A_type_inc: Viral 58.1 12 0.00026 25.6 2.7 17 596-612 2-18 (23)
31 PF14363 AAA_assoc: Domain ass 57.9 6.5 0.00014 35.4 1.9 42 472-514 30-71 (98)
32 KOG1987 Speckle-type POZ prote 57.0 13 0.00028 39.2 4.2 89 54-150 109-201 (297)
33 KOG1665 AFH1-interacting prote 50.6 59 0.0013 34.3 7.5 88 48-144 11-105 (302)
34 PF08581 Tup_N: Tup N-terminal 49.3 27 0.00058 30.8 4.2 31 590-620 34-64 (79)
35 COG2433 Uncharacterized conser 48.1 2E+02 0.0043 34.4 12.0 68 434-503 298-367 (652)
36 PF07407 Seadorna_VP6: Seadorn 42.7 36 0.00078 37.4 4.7 31 582-612 33-63 (420)
37 KOG3713 Voltage-gated K+ chann 38.8 1.1E+02 0.0024 35.4 8.0 110 19-144 11-134 (477)
38 KOG2715 Uncharacterized conser 35.1 1.4E+02 0.003 30.3 7.1 94 47-148 22-120 (210)
39 PF07989 Microtub_assoc: Micro 34.2 90 0.0019 27.2 5.1 37 583-619 38-74 (75)
40 KOG4571 Activating transcripti 34.1 62 0.0014 35.0 4.9 42 582-623 249-290 (294)
41 PF10473 CENP-F_leu_zip: Leuci 34.0 75 0.0016 30.9 5.1 39 582-620 74-112 (140)
42 TIGR02894 DNA_bind_RsfA transc 32.6 84 0.0018 31.3 5.1 28 587-614 103-130 (161)
43 PF14077 WD40_alt: Alternative 32.0 27 0.00059 27.8 1.4 21 597-617 13-33 (48)
44 TIGR01834 PHA_synth_III_E poly 28.9 68 0.0015 35.3 4.2 30 594-623 288-317 (320)
45 PF10929 DUF2811: Protein of u 27.5 42 0.00092 27.9 1.8 18 482-499 9-26 (57)
46 PF00170 bZIP_1: bZIP transcri 27.1 1.5E+02 0.0033 24.3 5.2 31 587-617 32-62 (64)
47 PRK13922 rod shape-determining 26.3 1E+02 0.0022 32.5 5.0 36 583-618 71-109 (276)
48 COG3510 CmcI Cephalosporin hyd 26.1 32 0.00069 35.5 1.1 36 468-503 182-219 (237)
49 PHA01750 hypothetical protein 24.7 1.5E+02 0.0033 25.4 4.6 33 587-619 41-73 (75)
50 PF13815 Dzip-like_N: Iguana/D 24.5 3E+02 0.0064 25.6 7.1 54 530-618 64-117 (118)
51 smart00338 BRLZ basic region l 24.3 1.6E+02 0.0035 24.2 4.9 33 586-618 31-63 (65)
52 PF09789 DUF2353: Uncharacteri 23.5 1E+02 0.0023 33.9 4.5 38 584-621 75-112 (319)
53 PLN03205 ATR interacting prote 23.3 81 0.0017 35.9 3.6 34 588-621 134-167 (652)
54 cd00068 GGL G protein gamma su 22.7 1.5E+02 0.0032 24.3 4.2 52 585-644 3-54 (57)
55 PF11365 DUF3166: Protein of u 22.4 2E+02 0.0043 26.4 5.3 38 585-622 5-42 (96)
56 PF11336 DUF3138: Protein of u 22.1 91 0.002 35.6 3.7 25 587-611 24-48 (514)
57 PF15294 Leu_zip: Leucine zipp 21.8 1.6E+02 0.0035 31.8 5.4 38 584-621 128-165 (278)
58 TIGR00219 mreC rod shape-deter 21.6 1.4E+02 0.003 32.1 5.0 34 585-618 70-107 (283)
59 PF11123 DNA_Packaging_2: DNA 21.3 57 0.0012 28.7 1.6 16 481-496 31-46 (82)
60 PRK14127 cell division protein 20.8 1.2E+02 0.0027 28.3 3.7 30 583-612 39-68 (109)
61 PF12017 Tnp_P_element: Transp 20.4 1.5E+02 0.0033 31.2 4.8 26 593-618 16-41 (236)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3e-89 Score=703.13 Aligned_cols=257 Identities=58% Similarity=0.940 Sum_probs=225.5
Q ss_pred CCcchhhcccCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHhcccccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 005842 227 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM 306 (674)
Q Consensus 227 ~dWW~eDl~~L~~~~f~rVi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (674)
.|||||||+.|++|+|+|||.+|+++||++++||++|++||+||||++.+......
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~------------------------ 56 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSS------------------------ 56 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccc------------------------
Confidence 48999999999999999999999999999999999999999999999865421100
Q ss_pred eecCCCCCCcchhhhhhHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccccccccccc
Q 005842 307 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA 386 (674)
Q Consensus 307 ~~~~~~~~~~~~~~~~qr~llEtiv~lLP~ek~~vsc~fL~~LLR~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs 386 (674)
...........+||.+||+||+|||.+|+++||+|||+|||+|+++++|++||.+||+|||+|||||||||||||+
T Consensus 57 ----~~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 57 ----SSAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred ----ccccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 0011123345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCcccchHHHHHHHHHHHhcccccCCCCCcccccccccccccccCCChhhHHHHHHHHhhhhhhccCCCCCChhHH
Q 005842 387 Y-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 465 (674)
Q Consensus 387 ~-~~~~tlyDvd~V~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kVakLvD~YLaEIA~D~nL~~~KF 465 (674)
. +..+|+||||+|+|||++||.+++..+...... ......++..++.+||||||+||+|||+|+||+|+||
T Consensus 133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF 204 (258)
T PF03000_consen 133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESE--------SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF 204 (258)
T ss_pred CCCcccchhhHHHHHHHHHHHHhcccccccccccc--------cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 4 455699999999999999999865432110000 0011246778999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCcchhHHHHHHHHhCCCCCHHhhccceeeeccCcCCHHHh
Q 005842 466 QVLAEALPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSIDAC 519 (674)
Q Consensus 466 ~~LAe~lPd~aR~~~DgLYRAIDiYLKaHp~Lse~Er~~lCr~mdcqKLS~EAc 519 (674)
++|||++|++||++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus 205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999999999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=231.88 Aligned_cols=143 Identities=23% Similarity=0.323 Sum_probs=129.8
Q ss_pred hhcchhhhhhcCCCeeEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCcee
Q 005842 32 ELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAV 110 (674)
Q Consensus 32 ~~~~~~~~r~~~~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~i 110 (674)
--++-+.+|.++.+|||+|.|++++|++||.||||+|+|||+||+.. +|+.+.+|+|++++ +++++++++|+||+++
T Consensus 23 ~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 23 LLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceE
Confidence 34456789999999999999999999999999999999999999987 88999999999987 7999999999999999
Q ss_pred ecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcchhh---HHHHHhhccchHHHHHhhchhhHHHHH
Q 005842 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRD---SIIVLKSCEKLSPWAENLQIVRRCSES 183 (674)
Q Consensus 111 ~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~sw~~---~i~~L~sC~~L~~~Ae~l~iv~rcids 183 (674)
.|+.+||+.|+.||.+|||++ |++.|++||.+++.++.+. .++.+++|.+|...|+. .|.+++.+-
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~v 169 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADE-YILQHFAEV 169 (571)
T ss_pred EechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999997 8899999999999887442 57788999999999998 567776654
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=7.9e-22 Score=220.47 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=116.1
Q ss_pred hhhhhcCCCeeEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEec--CCCCCCHHHHHHHHHhHhCceeecc
Q 005842 37 SWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVL--DDLPGGPEAFELAAKFCYGIAVDLT 113 (674)
Q Consensus 37 ~~~r~~~~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L--~d~pgGaeafell~~FcYg~~i~it 113 (674)
-.+|.++.+|||++. .|.+|++||.||||+|+|||+||+++ +|+.+ +|.+ .+++ +++|+.+++|+|||+|.||
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 14 LALSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred HHHHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhheeeeEEEe
Confidence 457889999998775 45699999999999999999999987 67643 5665 3776 7999999999999999999
Q ss_pred cchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcc-hhh--HHHHHhhccchHHHHHhhchhhHHHHH
Q 005842 114 ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS-WRD--SIIVLKSCEKLSPWAENLQIVRRCSES 183 (674)
Q Consensus 114 ~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~s-w~~--~i~~L~sC~~L~~~Ae~l~iv~rcids 183 (674)
.+||+.|+.||.+|||++ |++.|++||.+++.++ |.+ .++..++|.+|...|.+ .|.+++.+.
T Consensus 90 ~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~-fi~~nF~~v 155 (480)
T PHA02790 90 SHNVVNLLRASILTSVEF------IIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKD-FIAKHFLEL 155 (480)
T ss_pred cccHHHHHHHHHHhChHH------HHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHH-HHHHhHHHH
Confidence 999999999999999997 8899999999999877 433 56777888888888887 466766664
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.83 E-value=8.1e-21 Score=216.07 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=112.3
Q ss_pred cchhhhhhcCCCeeEEEEEC-CEEEEecCccccccCHHHHHhhcCC-CCC-CCceEecCCCCCCHHHHHHHHHhHhCcee
Q 005842 34 RGQSWYVATDIPSDFLVQIG-DVNFHLHKYPLLSRSGKMNRLIYES-RDS-ELNKIVLDDLPGGPEAFELAAKFCYGIAV 110 (674)
Q Consensus 34 ~~~~~~r~~~~lcDV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~-~e~-~~~~I~L~d~pgGaeafell~~FcYg~~i 110 (674)
++-+.+|.++.+|||+|.|+ |++|++||.||||+|+||++||+.+ +|. .+.+|+|++++ +++|+.+++|+||++
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC-
Confidence 45677899999999999998 8999999999999999999999987 655 47899999997 899999999999997
Q ss_pred ecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcc-hhhH--HHHHhhccchHHHHHhhchhhHH
Q 005842 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS-WRDS--IIVLKSCEKLSPWAENLQIVRRC 180 (674)
Q Consensus 111 ~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~s-w~~~--i~~L~sC~~L~~~Ae~l~iv~rc 180 (674)
|+.+||+.|+.||++|||+. |++.|++||.+++.++ |.+. ++....|..|...|.++ |.+++
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~-i~~~f 155 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRM-LMSNI 155 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHH-HHHHH
Confidence 79999999999999999997 8999999999999765 2221 22333555565555552 44443
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=195.03 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=93.3
Q ss_pred cCCCeeEEEEE--CCEEEEecCccccccCHHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHhHhCceeecccchHhh
Q 005842 42 TDIPSDFLVQI--GDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISG 119 (674)
Q Consensus 42 ~~~lcDV~v~V--~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~~ 119 (674)
++.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ + +++|+.+++|+|||++.|+.+||.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 78999999998 9999999999999999999999987632 57899988 5 7999999999999999999999999
Q ss_pred HHHhhhhcccccccccCcHHHHHHHHHHHhhhcc
Q 005842 120 LRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS 153 (674)
Q Consensus 120 LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~s 153 (674)
|+.||++|||++ |+..|++||.+.+...
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l~~~ 108 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKIIDDN 108 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhCCHh
Confidence 999999999997 8999999999988543
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=7.1e-17 Score=143.60 Aligned_cols=104 Identities=29% Similarity=0.391 Sum_probs=92.0
Q ss_pred hhhhcCCCeeEEEEEC-CEEEEecCccccccCHHHHHhhcCC--CCCCCceEecCCCCCCHHHHHHHHHhHhCceeecc-
Q 005842 38 WYVATDIPSDFLVQIG-DVNFHLHKYPLLSRSGKMNRLIYES--RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT- 113 (674)
Q Consensus 38 ~~r~~~~lcDV~v~V~-~~~F~lHK~vLas~S~yfr~lf~~~--~e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it- 113 (674)
.++.++.+||++|.|+ +.+|++||.+|+++|+||++||... .+....+|.+++++ +++|+.+++|+|++.+.++
T Consensus 3 ~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 3 DLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-
T ss_pred HHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCH
Confidence 4677899999999999 7999999999999999999999987 33344578899998 8999999999999999998
Q ss_pred cchHhhHHHhhhhcccccccccCcHHHHHHHHHHHh
Q 005842 114 ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 149 (674)
Q Consensus 114 ~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~ 149 (674)
.+|+..++.+|++|+|++ |+..|++||.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999996 999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=4.9e-15 Score=124.18 Aligned_cols=89 Identities=30% Similarity=0.446 Sum_probs=80.8
Q ss_pred eEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCceeecccchHhhHHHhhh
Q 005842 47 DFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAE 125 (674)
Q Consensus 47 DV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~~LlcAA~ 125 (674)
||++.|+|..|++||.+|+++|+||++||... .+.....+.+.+++ +++|+.+++|+||+++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999876 44457789998876 8999999999999999999999999999999
Q ss_pred hcccccccccCcHHHHHH
Q 005842 126 YLEMTEDLEEGNLIFKTE 143 (674)
Q Consensus 126 ~LqMte~~~~gNL~~~ce 143 (674)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999986 666664
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.15 E-value=2e-10 Score=125.82 Aligned_cols=182 Identities=21% Similarity=0.245 Sum_probs=141.6
Q ss_pred hhhhhhcCCCeeEEEEECC-----EEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCce
Q 005842 36 QSWYVATDIPSDFLVQIGD-----VNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIA 109 (674)
Q Consensus 36 ~~~~r~~~~lcDV~v~V~~-----~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~ 109 (674)
+.-+..+...+||++.|++ +.||+||++|+..|.-|.+||... .+....+|.++|+. +.+|...++|+|+-.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsde 182 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDE 182 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcch
Confidence 4446778899999999983 789999999999999999999987 44557899999998 799999999999999
Q ss_pred eecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHhhchhhHHHHHHHHHH-
Q 005842 110 VDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA- 188 (674)
Q Consensus 110 i~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsiA~ka- 188 (674)
+.+.++||..++.||.-.-.+. |...|.+||+..+. ..+.+..|.+|..| .++=.+.++|++.|.-..
T Consensus 183 v~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~--~~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~ 251 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLM--ADNAFLELFQRAKL---FDEPSLISICLEVIDKSFE 251 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcC--ChHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHH
Confidence 9999999999999998766664 89999999999885 56788888888544 455567899999985432
Q ss_pred -ccCCCCCcccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhcccCChhHHHHHHHHHHHcCCChhhHHHHHHHHH
Q 005842 189 -CANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYA 267 (674)
Q Consensus 189 -c~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rVi~am~~~g~~~~~i~~~l~~Ya 267 (674)
|.++ + ||-|.-.+ .++|..|+..= ...++.-.+-+++..|+
T Consensus 252 ~al~~-----------------------------------E-Gf~did~~-~dt~~evl~r~-~l~~~e~~lfeA~lkw~ 293 (521)
T KOG2075|consen 252 DALTP-----------------------------------E-GFCDIDST-RDTYEEVLRRD-TLEAREFRLFEAALKWA 293 (521)
T ss_pred hhhCc-----------------------------------c-ceeehhhH-HHHHHHHHhhc-ccchhHHHHHHHHHhhc
Confidence 1111 1 34455444 78887777432 12346557777777776
Q ss_pred H
Q 005842 268 A 268 (674)
Q Consensus 268 ~ 268 (674)
+
T Consensus 294 ~ 294 (521)
T KOG2075|consen 294 E 294 (521)
T ss_pred c
Confidence 6
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.15 E-value=1.9e-11 Score=131.12 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=96.7
Q ss_pred hhhhhcCCCeeEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCceeecccc
Q 005842 37 SWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTAS 115 (674)
Q Consensus 37 ~~~r~~~~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it~~ 115 (674)
..+.......||++.|+++.|++||.+||++|.|||+|+-.+ .|+.+..|.|++-. +++|..+++|+|||++.++..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~ 113 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGV 113 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccc
Confidence 357778889999999999999999999999999999998876 88889999998754 899999999999999998764
Q ss_pred hHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcc-hhh--HHHHHhhccchHHHHHh
Q 005842 116 NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS-WRD--SIIVLKSCEKLSPWAEN 173 (674)
Q Consensus 116 NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~s-w~~--~i~~L~sC~~L~~~Ae~ 173 (674)
.-..|+ +||.|..-|+=-.|-.+..+||.+.+.-. -+- -.+-|++.++|...+-.
T Consensus 114 ~ed~ll---d~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~m 171 (620)
T KOG4350|consen 114 EEDILL---DYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMM 171 (620)
T ss_pred hHHHHH---HHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHH
Confidence 433332 33444433333336677777777766433 111 23456666666555544
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.70 E-value=2.2e-08 Score=99.63 Aligned_cols=133 Identities=23% Similarity=0.278 Sum_probs=105.4
Q ss_pred ccCcchhhhcc---hhhhhhcCCCeeEEEEEC---CEEEEecCccccccCHHHHHhhcCCCCCCCceEecCCCCCCHHHH
Q 005842 25 SVKTDGFELRG---QSWYVATDIPSDFLVQIG---DVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAF 98 (674)
Q Consensus 25 ~s~~~~~~~~~---~~~~r~~~~lcDV~v~V~---~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~I~L~d~pgGaeaf 98 (674)
.|.|++|..|- .+-+.....++||++.++ +..+++||+|||++|++.+ |.+..+....+..+.|.. +++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHH
Confidence 46789998874 346777899999999998 5789999999999999875 444433334556677775 8999
Q ss_pred HHHHHhHhCceeecccchH--hhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHhhch
Q 005842 99 ELAAKFCYGIAVDLTASNI--SGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQI 176 (674)
Q Consensus 99 ell~~FcYg~~i~it~~NV--~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~i 176 (674)
..+++++||-+|++..+.+ ..|...|.-+|+.- |.++|+.=|-..++ ..+|-.+...||++..
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l~---------V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALLH---------VDNCIKFYEFAEELNA 183 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHhh---------HhhHHHHHHHHHHhhH
Confidence 9999999999999887665 45677788888874 77888887777664 5688889999998764
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.44 E-value=3.4e-07 Score=99.14 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=103.6
Q ss_pred hhhcCCCeeEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEec--CCCCCCHHHHHHHHHhHhCceeecccc
Q 005842 39 YVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVL--DDLPGGPEAFELAAKFCYGIAVDLTAS 115 (674)
Q Consensus 39 ~r~~~~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L--~d~pgGaeafell~~FcYg~~i~it~~ 115 (674)
+..+|.-+||+|.+-|..-++||.-| .-|+||..||... +|++...|+| .|---...+|..++.=.|..+|+|..+
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~ 141 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLS 141 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHH
Confidence 56689999999999999999999766 5699999999986 7777666554 443334899999999999999999999
Q ss_pred hHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHhhchh---hHHHHHH
Q 005842 116 NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIV---RRCSESI 184 (674)
Q Consensus 116 NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv---~rcidsi 184 (674)
.|..++.||.+||++. |+++|.+-+.+.+.+. +-......+..||++ ..|.+-+
T Consensus 142 dv~gvlAaA~~lqldg------l~qrC~evMie~lspk---------ta~~yYea~ckYgle~vk~kc~ewl 198 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDG------LIQRCGEVMIETLSPK---------TACGYYEAACKYGLESVKKKCLEWL 198 (488)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHHhcChh---------hhhHhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999996 8999999999998543 222344556666543 3444444
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.15 E-value=2.5e-06 Score=98.62 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=80.6
Q ss_pred CCeeEEEEECCEEEEecCccccccCHHHHHhhcCCCC-------------CCCceEecCCCCCCHHHHHHHHHhHhCcee
Q 005842 44 IPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRD-------------SELNKIVLDDLPGGPEAFELAAKFCYGIAV 110 (674)
Q Consensus 44 ~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e-------------~~~~~I~L~d~pgGaeafell~~FcYg~~i 110 (674)
-..|||++||+..|++||++|+++|++||+||..... ...++|.+.++| |.+||+++.|+||...
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDTL 634 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhcccc
Confidence 4679999999999999999999999999999975421 123456678999 6999999999999752
Q ss_pred ecccchHhhHHHhhhhcccccccccCcHHH--HHHHHHHHhhhcchhhHHHHHhhccchHHHHHhhchhhHHHHHHHHHH
Q 005842 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIF--KTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKA 188 (674)
Q Consensus 111 ~it~~NV~~LlcAA~~LqMte~~~~gNL~~--~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l~iv~rcidsiA~ka 188 (674)
+.|..-.++-|.+-- ..+.|+.+ ++|+-|...+ ......+|++....+.-.-..+.-||.+.
T Consensus 635 -~~P~heDdidci~fs------~~k~N~~qrtrtCeMl~~~l---------ekf~l~el~~~~~s~~~~~~~~n~ia~~~ 698 (1267)
T KOG0783|consen 635 -LSPWHEDDIDCIRFS------PLKENLSQRTRTCEMLANLL---------EKFHLAELLPFSVSRQPLLSLTNDIAQLY 698 (1267)
T ss_pred -cCCccccchhhhhcc------ccccChhhcccHHHHHHHHH---------hhhhHHhhhhhhhhccchhhcccHHHHHh
Confidence 333222233332211 12345555 3333333322 33345556666655544444555566553
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.15 E-value=2.7e-06 Score=98.38 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=101.2
Q ss_pred cCcchhhhcchhhhhhcCC----CeeEEEEECCEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHH
Q 005842 26 VKTDGFELRGQSWYVATDI----PSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFEL 100 (674)
Q Consensus 26 s~~~~~~~~~~~~~r~~~~----lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafel 100 (674)
+++...-+...+.+...+. .|||++. +|+.|++||.+|++++.||..||... .|... |.....|-.+|.++.
T Consensus 689 ~~~n~ia~~~~N~l~lsdh~e~~d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~i 765 (1267)
T KOG0783|consen 689 SLTNDIAQLYNNFLVLSDHEETMDTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSI 765 (1267)
T ss_pred hcccHHHHHhcCeeEecCCccceeEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHH
Confidence 3443444444555554433 3344444 78889999999999999999999865 55444 444445555899999
Q ss_pred HHHhHh-Cceeec-----ccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHhh
Q 005842 101 AAKFCY-GIAVDL-----TASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENL 174 (674)
Q Consensus 101 l~~FcY-g~~i~i-----t~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~~sw~~~i~~L~sC~~L~~~Ae~l 174 (674)
+++|.| +-+.++ ..+=+..++..|+.|=+++ |...||.-|.+.+ .|++|..|+.+|-.|
T Consensus 766 vLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY 830 (1267)
T KOG0783|consen 766 VLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMY 830 (1267)
T ss_pred HHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHh
Confidence 999999 444443 2233566777788887876 7888888888877 578888888877766
Q ss_pred c---hhhHHHHHHHHHH
Q 005842 175 Q---IVRRCSESIAWKA 188 (674)
Q Consensus 175 ~---iv~rcidsiA~ka 188 (674)
+ +-.+|+|=|.-.+
T Consensus 831 ~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 831 HAKELYSRCIDFICHNI 847 (1267)
T ss_pred hHHHHHHHHHHHHHHhH
Confidence 4 4578988876543
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.58 E-value=5.7e-05 Score=80.80 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=76.1
Q ss_pred EEEEECC------EEEEecCccccccCHHHHHhhcC----CCCCCCceEec-CCCCCCHHHHHHHHHhHhCceeecccch
Q 005842 48 FLVQIGD------VNFHLHKYPLLSRSGKMNRLIYE----SRDSELNKIVL-DDLPGGPEAFELAAKFCYGIAVDLTASN 116 (674)
Q Consensus 48 V~v~V~~------~~F~lHK~vLas~S~yfr~lf~~----~~e~~~~~I~L-~d~pgGaeafell~~FcYg~~i~it~~N 116 (674)
|+|+|-| +.|.+.+.+|.+.=+||+..+.. ..+.+...|.. -|+ .+|+.+++|+++....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666632 57999999999999999999954 22223333443 366 599999999999999999999
Q ss_pred HhhHHHhhhhcccccccccCcHHHHHHHHHHHhh
Q 005842 117 ISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (674)
Q Consensus 117 V~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v 150 (674)
|+.++-.++||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999997 9999999987765
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.55 E-value=0.0039 Score=56.32 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=60.5
Q ss_pred EEEEE-CCEEEEecCccccccCHHHHHhhcCCC-C-CCCceEecCCCCCCHHHHHHHHHhHhCce-----------e---
Q 005842 48 FLVQI-GDVNFHLHKYPLLSRSGKMNRLIYESR-D-SELNKIVLDDLPGGPEAFELAAKFCYGIA-----------V--- 110 (674)
Q Consensus 48 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~-e-~~~~~I~L~d~pgGaeafell~~FcYg~~-----------i--- 110 (674)
|+++- +|+.|.+.+.+. ..|+-++.|+.+.. + .....|.|++|+ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 679999999855 68999999998642 1 122579999998 599999999998321 1
Q ss_pred -----ecccchHhhHHHhhhhccc
Q 005842 111 -----DLTASNISGLRCAAEYLEM 129 (674)
Q Consensus 111 -----~it~~NV~~LlcAA~~LqM 129 (674)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1666789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.88 E-value=0.0043 Score=54.59 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=61.5
Q ss_pred EEEEECCEEEEecCcccc-ccCHHHHHhhcCC----CCCCCceEecCCCCCCHHHHHHHHHhHhC-ceeecc-cchHhhH
Q 005842 48 FLVQIGDVNFHLHKYPLL-SRSGKMNRLIYES----RDSELNKIVLDDLPGGPEAFELAAKFCYG-IAVDLT-ASNISGL 120 (674)
Q Consensus 48 V~v~V~~~~F~lHK~vLa-s~S~yfr~lf~~~----~e~~~~~I~L~d~pgGaeafell~~FcYg-~~i~it-~~NV~~L 120 (674)
|+|.|||+.|.+-+..|. -...+|.+|+... ...+...+-|. -.|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999853 12344566553 247999999999999 777764 6789999
Q ss_pred HHhhhhccccc
Q 005842 121 RCAAEYLEMTE 131 (674)
Q Consensus 121 lcAA~~LqMte 131 (674)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999986
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.034 Score=57.60 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=75.8
Q ss_pred EEEEECCEEEEecCccccccCHHHHHhhcCCC--CCCC-ceEecCCCCCCHHHHHHHHHhHhCceeec--ccchHhhHHH
Q 005842 48 FLVQIGDVNFHLHKYPLLSRSGKMNRLIYESR--DSEL-NKIVLDDLPGGPEAFELAAKFCYGIAVDL--TASNISGLRC 122 (674)
Q Consensus 48 V~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~--e~~~-~~I~L~d~pgGaeafell~~FcYg~~i~i--t~~NV~~Llc 122 (674)
|.+.|||..|..+|.-|--..+||+.|+...- +.+. ..|-|. -.|.=|++|++|+=.|.+.+ +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45889999999999999999999999998752 2222 334443 23699999999999776665 6677889999
Q ss_pred hhhhcccccccccCcHHHHHHHHHHHhh
Q 005842 123 AAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (674)
Q Consensus 123 AA~~LqMte~~~~gNL~~~ce~FL~~~v 150 (674)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999997 9999998777754
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.28 E-value=0.042 Score=49.72 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=60.1
Q ss_pred CCEEEEecCccccccCHHHHHhhcCC---CCCCCceEecCCCCCCHHHHHHHHHhH-----hCc------eeecccchHh
Q 005842 53 GDVNFHLHKYPLLSRSGKMNRLIYES---RDSELNKIVLDDLPGGPEAFELAAKFC-----YGI------AVDLTASNIS 118 (674)
Q Consensus 53 ~~~~F~lHK~vLas~S~yfr~lf~~~---~e~~~~~I~L~d~pgGaeafell~~Fc-----Yg~------~i~it~~NV~ 118 (674)
+|..|-+-|- .|--||-+|+|+... .+....+|.+.+|| +-.++.+..|. |+. +++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 4688888665 677899999999964 45667899999999 79999998875 443 3678899999
Q ss_pred hHHHhhhhcc
Q 005842 119 GLRCAAEYLE 128 (674)
Q Consensus 119 ~LlcAA~~Lq 128 (674)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.75 E-value=0.016 Score=61.01 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred hcCCCeeEEEEECCEEEEecCccccccCHHHHHhhcCCCCC---CCceEecCCCCCCHHHHHHHHHhHhCceee---ccc
Q 005842 41 ATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDS---ELNKIVLDDLPGGPEAFELAAKFCYGIAVD---LTA 114 (674)
Q Consensus 41 ~~~~lcDV~v~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~---~~~~I~L~d~pgGaeafell~~FcYg~~i~---it~ 114 (674)
...+..||-|......|++||..|+++|++|+-+.....+. ....|+.-+|. -++|+..+.+.|+++.- +.-
T Consensus 126 e~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~f 203 (401)
T KOG2838|consen 126 ERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGF 203 (401)
T ss_pred heeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCC
Confidence 34577899999999999999999999999999988765443 23456667776 58999999999998763 444
Q ss_pred chHhhHHHhhhhcc
Q 005842 115 SNISGLRCAAEYLE 128 (674)
Q Consensus 115 ~NV~~LlcAA~~Lq 128 (674)
.|+..|-.-.+-++
T Consensus 204 qn~diL~QL~edFG 217 (401)
T KOG2838|consen 204 QNSDILEQLCEDFG 217 (401)
T ss_pred chHHHHHHHHHhhC
Confidence 56665554444444
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.75 E-value=0.2 Score=41.35 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=42.9
Q ss_pred EEEEE-CCEEEEecCccccccCHHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHhHh
Q 005842 48 FLVQI-GDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCY 106 (674)
Q Consensus 48 V~v~V-~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~I~L~d~pgGaeafell~~FcY 106 (674)
|+|+- +|+.|.+.+.+ |-.|+.++.|+....+... .|.|++|+ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 57999998875 4589999999987533222 79999998 699999999997
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.15 Score=50.42 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=69.8
Q ss_pred CCEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCcee---------------------
Q 005842 53 GDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAV--------------------- 110 (674)
Q Consensus 53 ~~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~i--------------------- 110 (674)
+|+.|.+-.. .|-.|.-++.++.+. -..+...|-|+.|. +.+|.+|++|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 6788988776 466789989888764 11122578888888 6999999999996321
Q ss_pred ----ecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhhh
Q 005842 111 ----DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 151 (674)
Q Consensus 111 ----~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v~ 151 (674)
.+...++..|.-||.||+|.. |++.||.....++-
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHc
Confidence 234468999999999999996 99999999988773
No 22
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.40 E-value=0.71 Score=49.03 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=40.3
Q ss_pred EEEecCccccccCHHHHHhhcC----CCC------CCCceEecCC--CCCCHHHHHH-HHHhHhCceeeccc
Q 005842 56 NFHLHKYPLLSRSGKMNRLIYE----SRD------SELNKIVLDD--LPGGPEAFEL-AAKFCYGIAVDLTA 114 (674)
Q Consensus 56 ~F~lHK~vLas~S~yfr~lf~~----~~e------~~~~~I~L~d--~pgGaeafel-l~~FcYg~~i~it~ 114 (674)
.+.+||.+.+++|++||.|+.. ..| ....+|.+.. || .+|.. ++.|+||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchhh
Confidence 4789999999999999998752 222 2345677754 55 67764 56888998887743
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.64 E-value=2.2 Score=47.29 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=72.2
Q ss_pred EEEEecCccccccCHHHHHhhcCC-CCCC-Cc---eEecCCCCCCHHHHHHHHHhHhCceeecccchHhhHHHhhhhccc
Q 005842 55 VNFHLHKYPLLSRSGKMNRLIYES-RDSE-LN---KIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEM 129 (674)
Q Consensus 55 ~~F~lHK~vLas~S~yfr~lf~~~-~e~~-~~---~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~~LlcAA~~LqM 129 (674)
..+|+|..++ ++..||+.||++. .|+. .. ...|+.+. ....|.+++|.|+-+-+|-++-...++--|+.|-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999876 5679999999986 4422 22 23344443 57889999999999999999999999999998877
Q ss_pred ccccccCcHHHHHHHHHHHhhhcc-hhhHHHHHhhccch
Q 005842 130 TEDLEEGNLIFKTEAFLSYVVLSS-WRDSIIVLKSCEKL 167 (674)
Q Consensus 130 te~~~~gNL~~~ce~FL~~~v~~s-w~~~i~~L~sC~~L 167 (674)
.++. -|...+..-+.+..-.. --+.+.+|..|-++
T Consensus 378 ~~dr---~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~ 413 (516)
T KOG0511|consen 378 ADDR---LLKTAASAEITQWLELIDMYGVLDILEYCWDL 413 (516)
T ss_pred hhhh---hhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 7532 14444544444433211 11355667777554
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=77.64 E-value=11 Score=40.86 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=76.5
Q ss_pred hhcCCCeeEEEEECCEEEEecCccccccCH-HHHHhhcCC----CCCCCceEec-CCCCCCHHHHHHHHHhHhCceeec-
Q 005842 40 VATDIPSDFLVQIGDVNFHLHKYPLLSRSG-KMNRLIYES----RDSELNKIVL-DDLPGGPEAFELAAKFCYGIAVDL- 112 (674)
Q Consensus 40 r~~~~lcDV~v~V~~~~F~lHK~vLas~S~-yfr~lf~~~----~e~~~~~I~L-~d~pgGaeafell~~FcYg~~i~i- 112 (674)
+..|..--++..|++..|-.-+++|-+.-. -+-.||... ...+..+++. .++. ...|..|++|--+|.|.-
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 556666678899999999999999887633 344666543 2234556776 5563 899999999988888764
Q ss_pred ccchHhhHHHhhhhcccccc---------------cccCcHHHHHHHHHHHhhh
Q 005842 113 TASNISGLRCAAEYLEMTED---------------LEEGNLIFKTEAFLSYVVL 151 (674)
Q Consensus 113 t~~NV~~LlcAA~~LqMte~---------------~~~gNL~~~ce~FL~~~v~ 151 (674)
..-.|-.|+.|.+||-+.=+ ++...-.++-+.||++.++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~IL 221 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIIL 221 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 33568899999999987632 2222334555666666654
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=72.89 E-value=7.4 Score=43.92 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=60.5
Q ss_pred EEEEECCEEEEecCccccccC--HHHHHhhcCC--CCCCCc-eEecCCCCCCHHHHHHHHHhHhCceeecccchHhhHHH
Q 005842 48 FLVQIGDVNFHLHKYPLLSRS--GKMNRLIYES--RDSELN-KIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRC 122 (674)
Q Consensus 48 V~v~V~~~~F~lHK~vLas~S--~yfr~lf~~~--~e~~~~-~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~~Llc 122 (674)
|.+.|||+.|.--+.-|+... .+|.+|++.. ...... .|-| +-.|+.|..+++|.-|+++.+..--...|+-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 568899999999999888765 6899999753 122222 2333 2347999999999999999996644555555
Q ss_pred -hhhhccccc
Q 005842 123 -AAEYLEMTE 131 (674)
Q Consensus 123 -AA~~LqMte 131 (674)
=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999986
No 26
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=71.49 E-value=3.1 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=28.1
Q ss_pred ecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhh
Q 005842 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (674)
Q Consensus 111 ~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v 150 (674)
.++...+..|+.||.||+|.. |++.|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 446779999999999999996 9999999998877
No 27
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=24 Score=33.96 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=66.0
Q ss_pred EEE-EECCEEEEecCccccccCHHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHhHhCce---------e-------
Q 005842 48 FLV-QIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIA---------V------- 110 (674)
Q Consensus 48 V~v-~V~~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~I~L~d~pgGaeafell~~FcYg~~---------i------- 110 (674)
|.| -.+|+.|.+.+. .|-+|-.++.|+....+++.. +.++.+. +..|..+.+||---+ +
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~p-~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNYP-IPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCCC-Ccccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 344 356899999886 688899999988765433322 3345554 789999999996321 1
Q ss_pred ---------ecccchHhhHHHhhhhcccccccccCcHHHHHHHHHHHhh
Q 005842 111 ---------DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (674)
Q Consensus 111 ---------~it~~NV~~LlcAA~~LqMte~~~~gNL~~~ce~FL~~~v 150 (674)
++..+....+.-||.||++.. |++.||.-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 122344567788999999986 8899999888877
No 28
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=65.50 E-value=1.1 Score=49.67 Aligned_cols=92 Identities=18% Similarity=0.027 Sum_probs=56.5
Q ss_pred cchhhhhhcCCCe--eEEEEE-CCEEEEecCccccccCHHHHH-hhcCCCCCCCceE-ecCCCCCCHHHHHHHHHhHhCc
Q 005842 34 RGQSWYVATDIPS--DFLVQI-GDVNFHLHKYPLLSRSGKMNR-LIYESRDSELNKI-VLDDLPGGPEAFELAAKFCYGI 108 (674)
Q Consensus 34 ~~~~~~r~~~~lc--DV~v~V-~~~~F~lHK~vLas~S~yfr~-lf~~~~e~~~~~I-~L~d~pgGaeafell~~FcYg~ 108 (674)
.-++-++.+++.| |++..+ +|..|-+||+.|+++|.||.. +.... ....+| .+.-+ +.+|+..++|.|-.
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~---~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVI---LSAFSPFLKQLYLN 210 (516)
T ss_pred HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhh---HhhhhHHHHHHHHh
Confidence 3456677777633 888766 478999999999999877753 33222 122344 33445 48999999999964
Q ss_pred eeecccchHhhHHHhhhhcccc
Q 005842 109 AVDLTASNISGLRCAAEYLEMT 130 (674)
Q Consensus 109 ~i~it~~NV~~LlcAA~~LqMt 130 (674)
.=.+-+.--.+|+....-++..
T Consensus 211 ~na~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 211 TNAEWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhhhhhhHHHHHHhhhhhccHH
Confidence 2222222224455544444443
No 29
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.59 E-value=20 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.348 Sum_probs=29.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005842 585 TAKKDINTLKFELESVKAKYLELQNDMETLQRQF 618 (674)
Q Consensus 585 ~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~ 618 (674)
+.+.|.+.||..+..+..|+.+||.|+..+|+-.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3577899999999999999999999999888763
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=58.08 E-value=12 Score=25.59 Aligned_cols=17 Identities=12% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005842 596 ELESVKAKYLELQNDME 612 (674)
Q Consensus 596 el~~Mr~rv~eLEk~~~ 612 (674)
||++.|.|+.+||++..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78999999999999865
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=57.90 E-value=6.5 Score=35.44 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.2
Q ss_pred cCCCccccCcchhHHHHHHHHhCCCCCHHhhccceeeeccCcC
Q 005842 472 LPESARTCDDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKL 514 (674)
Q Consensus 472 lPd~aR~~~DgLYRAIDiYLKaHp~Lse~Er~~lCr~mdcqKL 514 (674)
+|++.......||+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4455557788999999999999988775 88888887776653
No 32
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.05 E-value=13 Score=39.17 Aligned_cols=89 Identities=18% Similarity=0.059 Sum_probs=62.8
Q ss_pred CEEEEecCccccccCHHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHhHhCceeecccchHh---hHHHhhhhccc
Q 005842 54 DVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNIS---GLRCAAEYLEM 129 (674)
Q Consensus 54 ~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~---~LlcAA~~LqM 129 (674)
+..+..|+.+++++|+-|+.|+... .+.....+.+.+.. ++.|+.+..|.|...-.-+..++. .++++|.-.+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4569999999999999999998764 22333444666654 688999999999854444444443 66666655555
Q ss_pred ccccccCcHHHHHHHHHHHhh
Q 005842 130 TEDLEEGNLIFKTEAFLSYVV 150 (674)
Q Consensus 130 te~~~~gNL~~~ce~FL~~~v 150 (674)
. .|...|...|...+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 4 37888888887765
No 33
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=50.58 E-value=59 Score=34.25 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=65.6
Q ss_pred EEEEECCEEEEecCccccccC--HHHHHhhcCC----CCCCCceEecCCCCCCHHHHHHHHHhHhCcee-ecccchHhhH
Q 005842 48 FLVQIGDVNFHLHKYPLLSRS--GKMNRLIYES----RDSELNKIVLDDLPGGPEAFELAAKFCYGIAV-DLTASNISGL 120 (674)
Q Consensus 48 V~v~V~~~~F~lHK~vLas~S--~yfr~lf~~~----~e~~~~~I~L~d~pgGaeafell~~FcYg~~i-~it~~NV~~L 120 (674)
|.+.+||+.|.--..-|.-+= ..+-+||... .+.++.-+-|.- .|.-||-|++|.-.|.| ..+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 567899999998888887773 4678899863 223333444433 25899999999998775 5677899999
Q ss_pred HHhhhhcccccccccCcHHHHHHH
Q 005842 121 RCAAEYLEMTEDLEEGNLIFKTEA 144 (674)
Q Consensus 121 lcAA~~LqMte~~~~gNL~~~ce~ 144 (674)
+.+|.|+|+-. |++.-++
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999975 6665555
No 34
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=49.28 E-value=27 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005842 590 INTLKFELESVKAKYLELQNDMETLQRQFDK 620 (674)
Q Consensus 590 n~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k 620 (674)
+..-=.||+.||..|.+||..+..||+..+.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467999999999999999999988753
No 35
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.08 E-value=2e+02 Score=34.36 Aligned_cols=68 Identities=28% Similarity=0.316 Sum_probs=57.2
Q ss_pred CCChhhHHHHHHHHhhhhhhccCCCCCChhHHHHHHHhcCCCccccC--cchhHHHHHHHHhCCCCCHHhhc
Q 005842 434 GNGTSAKMRVARLVDGYLTEVARDRNLSLTKFQVLAEALPESARTCD--DGLYRAIDSYLKAHPTLSEHERK 503 (674)
Q Consensus 434 ~~~~~~l~kVakLvD~YLaEIA~D~nL~~~KF~~LAe~lPd~aR~~~--DgLYRAIDiYLKaHp~Lse~Er~ 503 (674)
.+.+....|+|.-++.-|. -||..|+++.=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+
T Consensus 298 tp~P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 298 TPAPETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred CCChHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678899999888875 68999999999998888888888887 89999999999888877777775
No 36
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.72 E-value=36 Score=37.37 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=24.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005842 582 GWATAKKDINTLKFELESVKAKYLELQNDME 612 (674)
Q Consensus 582 ~~~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~ 612 (674)
+-..++.||..||.|.+.+|.+|..||.+-.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788899999999999998888886654
No 37
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=38.77 E-value=1.1e+02 Score=35.42 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=67.7
Q ss_pred ccccccccCcchhhhcchhhhhhcCCCeeEEEEECCEEEEecCcccccc-CHHHHHhhcCC-----------CCCCCceE
Q 005842 19 LSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSR-SGKMNRLIYES-----------RDSELNKI 86 (674)
Q Consensus 19 m~~~kl~s~~~~~~~~~~~~~r~~~~lcDV~v~V~~~~F~lHK~vLas~-S~yfr~lf~~~-----------~e~~~~~I 86 (674)
|.....|..++..+.. .....-|+|.|||..+.+-+..|... =.++.++.... -+....+.
T Consensus 11 ~~~~~~~~~~~~~~~~-------~~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Ey 83 (477)
T KOG3713|consen 11 RDVPVGGPEPEGIIRD-------GALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEY 83 (477)
T ss_pred ccccccCCCCccccCC-------CCcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCee
Confidence 4444455555555444 34455688999999999988877662 22344443311 12234556
Q ss_pred ecCCCCCCHHHHHHHHHhHhCceeecccchHhhHHHhh--hhcccccccccCcHHHHHHH
Q 005842 87 VLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAA--EYLEMTEDLEEGNLIFKTEA 144 (674)
Q Consensus 87 ~L~d~pgGaeafell~~FcYg~~i~it~~NV~~LlcAA--~~LqMte~~~~gNL~~~ce~ 144 (674)
-+.-- |.+|..|++|-+||++.. +.+|..+.-.. +|=++++ +-++.||.
T Consensus 84 fFDR~---P~~F~~Vl~fYrtGkLH~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 84 FFDRH---PGAFAYVLNFYRTGKLHV-PADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred eeccC---hHHHHHHHHHHhcCeecc-ccccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 65443 579999999999999987 56666554433 4556665 34555553
No 38
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.12 E-value=1.4e+02 Score=30.28 Aligned_cols=94 Identities=18% Similarity=0.125 Sum_probs=66.9
Q ss_pred eEEEEECCEEEEecCccccccC-HHHHHhhcCCC----CCCCceEecCCCCCCHHHHHHHHHhHhCceeecccchHhhHH
Q 005842 47 DFLVQIGDVNFHLHKYPLLSRS-GKMNRLIYESR----DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLR 121 (674)
Q Consensus 47 DV~v~V~~~~F~lHK~vLas~S-~yfr~lf~~~~----e~~~~~I~L~d~pgGaeafell~~FcYg~~i~it~~NV~~Ll 121 (674)
=|.+.|||..|.--|.-|.--+ .++.++..... +.+..---|-|= +|.-|.-|++|.--|++-++.---+.++
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL 99 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVL 99 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccc
Confidence 3566899999999999999888 56666665432 223333444333 3689999999999999999986667788
Q ss_pred HhhhhcccccccccCcHHHHHHHHHHH
Q 005842 122 CAAEYLEMTEDLEEGNLIFKTEAFLSY 148 (674)
Q Consensus 122 cAA~~LqMte~~~~gNL~~~ce~FL~~ 148 (674)
.-|+|...+. |+....+-+.+
T Consensus 100 ~EAefyn~~~------li~likd~i~d 120 (210)
T KOG2715|consen 100 EEAEFYNDPS------LIQLIKDRIQD 120 (210)
T ss_pred hhhhccCChH------HHHHHHHHHHH
Confidence 8888888875 55444444433
No 39
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=34.20 E-value=90 Score=27.16 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=29.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005842 583 WATAKKDINTLKFELESVKAKYLELQNDMETLQRQFD 619 (674)
Q Consensus 583 ~~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~ 619 (674)
...+.++|-+||.+++.|+..+.++.+......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456788888999999999888888888776666654
No 40
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=34.08 E-value=62 Score=35.04 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=34.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005842 582 GWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTK 623 (674)
Q Consensus 582 ~~~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~~~ 623 (674)
.|.++..|.+.|-..=+.+|.++.+||||..-||+-|...-+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888999999999999999998855443
No 41
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.99 E-value=75 Score=30.92 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=30.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005842 582 GWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDK 620 (674)
Q Consensus 582 ~~~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k 620 (674)
...+++.|+..|-.+++.|+.||.|||.-++.....|+.
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455678888888888889999999998887776665543
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.60 E-value=84 Score=31.34 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005842 587 KKDINTLKFELESVKAKYLELQNDMETL 614 (674)
Q Consensus 587 ~rEn~~Lk~el~~Mr~rv~eLEk~~~~m 614 (674)
..||+.|+.++..++.++.+||++...+
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444
No 43
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.02 E-value=27 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005842 597 LESVKAKYLELQNDMETLQRQ 617 (674)
Q Consensus 597 l~~Mr~rv~eLEk~~~~m~~~ 617 (674)
-+++|.||+|||.|...+++-
T Consensus 13 ~e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred cchheeeHHHHHHHHHHHHHH
Confidence 356789999999998777664
No 44
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.94 E-value=68 Score=35.30 Aligned_cols=30 Identities=17% Similarity=0.463 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005842 594 KFELESVKAKYLELQNDMETLQRQFDKLTK 623 (674)
Q Consensus 594 k~el~~Mr~rv~eLEk~~~~m~~~~~k~~~ 623 (674)
|.||+.+..|+.|||++...++++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 568888889999999999999998877653
No 45
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.48 E-value=42 Score=27.90 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=15.8
Q ss_pred chhHHHHHHHHhCCCCCH
Q 005842 482 GLYRAIDSYLKAHPTLSE 499 (674)
Q Consensus 482 gLYRAIDiYLKaHp~Lse 499 (674)
-||.|+.-||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 589999999999999654
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.05 E-value=1.5e+02 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005842 587 KKDINTLKFELESVKAKYLELQNDMETLQRQ 617 (674)
Q Consensus 587 ~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~ 617 (674)
..+...|..+.+.|+..+..|++++..++.+
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555544
No 47
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.31 E-value=1e+02 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=26.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 005842 583 WATAKKDINTLKFELESVKAKYLEL---QNDMETLQRQF 618 (674)
Q Consensus 583 ~~~~~rEn~~Lk~el~~Mr~rv~eL---Ek~~~~m~~~~ 618 (674)
...+..||+.||.|+..++.++.++ ++|-..+++.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999888855 45555555544
No 48
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.08 E-value=32 Score=35.54 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=27.4
Q ss_pred HHHhcC--CCccccCcchhHHHHHHHHhCCCCCHHhhc
Q 005842 468 LAEALP--ESARTCDDGLYRAIDSYLKAHPTLSEHERK 503 (674)
Q Consensus 468 LAe~lP--d~aR~~~DgLYRAIDiYLKaHp~Lse~Er~ 503 (674)
+.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 345566 666677999999999999999965555543
No 49
>PHA01750 hypothetical protein
Probab=24.72 E-value=1.5e+02 Score=25.42 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005842 587 KKDINTLKFELESVKAKYLELQNDMETLQRQFD 619 (674)
Q Consensus 587 ~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~ 619 (674)
..|...|+.|++..+.|..+||++...+++.+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 456666777777777777777777666665543
No 50
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.45 E-value=3e+02 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhhhhhhhhcccccccCCCCCCccccccccccccCCcccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005842 530 LRIVVQVLFSEQIKISNAMANSTLKEAGESQYQPMISNRKSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQN 609 (674)
Q Consensus 530 lr~vVQvLf~eQl~lr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rEn~~Lk~el~~Mr~rv~eLEk 609 (674)
++..+|=|++-|-.|-..+. .+..+++.+..+.++++.++.+++.
T Consensus 64 aQl~ieYLl~~q~~L~~~~~-----------------------------------~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE-----------------------------------QLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889998888877643211 2344567777777777777777777
Q ss_pred HHHHHHHHH
Q 005842 610 DMETLQRQF 618 (674)
Q Consensus 610 ~~~~m~~~~ 618 (674)
++..+|++.
T Consensus 109 ~~k~lk~E~ 117 (118)
T PF13815_consen 109 EIKKLKKES 117 (118)
T ss_pred HHHHHHHhc
Confidence 777777663
No 51
>smart00338 BRLZ basic region leucin zipper.
Probab=24.30 E-value=1.6e+02 Score=24.19 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005842 586 AKKDINTLKFELESVKAKYLELQNDMETLQRQF 618 (674)
Q Consensus 586 ~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~ 618 (674)
+..+.+.|..+.+.|+.++..|+.++..++.++
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666777766666654
No 52
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.54 E-value=1e+02 Score=33.88 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=33.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005842 584 ATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKL 621 (674)
Q Consensus 584 ~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~ 621 (674)
..++.+|..|+.|++.+|.++.|++.+|..++..+.+.
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 45688999999999999999999999999998887654
No 53
>PLN03205 ATR interacting protein; Provisional
Probab=23.25 E-value=81 Score=35.89 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005842 588 KDINTLKFELESVKAKYLELQNDMETLQRQFDKL 621 (674)
Q Consensus 588 rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~ 621 (674)
-|+..||.|++++..++.+.|.||+.+|+.-.|-
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (652)
T PLN03205 134 LEIDRLKKELERVSKQLLDVEQECSQLKKGKNKE 167 (652)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcccccc
Confidence 4788999999999999999999999887754443
No 54
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=22.70 E-value=1.5e+02 Score=24.30 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=32.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcccccccccccCCCCC
Q 005842 585 TAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQTSAWTSGWKKLGKLTKMT 644 (674)
Q Consensus 585 ~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~~~~k~~~~~~s~~k~l~~l~~f~ 644 (674)
..+++++.||.|+.+=|++|+. .|..|.+=++.-...- .+...+|. ..|||.
T Consensus 3 ~~~~~veqLr~el~~~RikvS~---a~~~l~~y~e~~~~~D--pll~g~~~---~~NP~~ 54 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSK---AAAELLKYCEQNAEND--PLLTGPPS---PSNPWI 54 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHH---HHHHHHHHHHhcCCCC--CCCCCCCC---CCCCCC
Confidence 3578999999999988888876 5555555554332211 24444443 358885
No 55
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=22.45 E-value=2e+02 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005842 585 TAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLT 622 (674)
Q Consensus 585 ~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~~ 622 (674)
.+++..+=.+.|.+-||-+++|||++-..|..++.|..
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999999999999998754
No 56
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.12 E-value=91 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 005842 587 KKDINTLKFELESVKAKYLELQNDM 611 (674)
Q Consensus 587 ~rEn~~Lk~el~~Mr~rv~eLEk~~ 611 (674)
..+|+.|+.+|..+|.+|.|||++.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999874
No 57
>PF15294 Leu_zip: Leucine zipper
Probab=21.84 E-value=1.6e+02 Score=31.83 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=31.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005842 584 ATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKL 621 (674)
Q Consensus 584 ~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~~m~~~~~k~ 621 (674)
.-+..|+..|+.|-+++|.|+..+|+.|..+-.+-.++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998775554443
No 58
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.60 E-value=1.4e+02 Score=32.09 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 005842 585 TAKKDINTLKFELESVKAKYLE----LQNDMETLQRQF 618 (674)
Q Consensus 585 ~~~rEn~~Lk~el~~Mr~rv~e----LEk~~~~m~~~~ 618 (674)
.+..||+.||.|+..++.++.. |++|-..+|+.+
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999998877666553 556655555544
No 59
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.34 E-value=57 Score=28.67 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHhCCC
Q 005842 481 DGLYRAIDSYLKAHPT 496 (674)
Q Consensus 481 DgLYRAIDiYLKaHp~ 496 (674)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999976
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=20.75 E-value=1.2e+02 Score=28.28 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005842 583 WATAKKDINTLKFELESVKAKYLELQNDME 612 (674)
Q Consensus 583 ~~~~~rEn~~Lk~el~~Mr~rv~eLEk~~~ 612 (674)
+..+.+||..|+.++.+++.++.+++....
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666777777777777777777766544
No 61
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.35 E-value=1.5e+02 Score=31.19 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005842 593 LKFELESVKAKYLELQNDMETLQRQF 618 (674)
Q Consensus 593 Lk~el~~Mr~rv~eLEk~~~~m~~~~ 618 (674)
++.|...||.++.+||++...+|+++
T Consensus 16 ~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 16 LKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
Done!