BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005843
(674 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 123 FGWCTWDAFYQEVNPQGIKDGLKSLSEGGTP---AKFLIIDDGWQDTTNEFQIEGEPFAE 179
GW TW+ + V+ Q I D K+++ G ++IIDD WQ NE + A+
Sbjct: 11 MGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQ--KNERESSKTLLAD 68
Query: 180 GTQF 183
T+F
Sbjct: 69 PTKF 72
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 77 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 134
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFGGR------LASIKENNKFRGTTGDDQ 204
+ ++ G T F +G P G G + I + R TG Q
Sbjct: 135 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGASNSGMHLMIGILAALEIRHKTGRGQ 193
Query: 205 KETSGLKDFVLDIKK 219
K ++D VL++ +
Sbjct: 194 KVAVAMQDAVLNLVR 208
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 77 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 134
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 135 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGSSNSGMHLMIGILAAL----EIRHKT 189
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 190 GRGQKVAVAMQDAVLNLVR 208
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EMRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGXSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 106 GTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTP---AKFLIIDDG 162
G F + + G+ GW W+ F +V+ Q + D +S+ G K++I+DD
Sbjct: 15 GVFGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDC 74
Query: 163 W---QDTTNEFQIEGEPFAEGTQFGGRLASIKENNKF 196
W +D+ + + F G G +A NN F
Sbjct: 75 WSSGRDSDGFLVADEQKFPNGM---GHVADHLHNNSF 108
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 106 GTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTP---AKFLIIDDG 162
G F + + G+ GW W+ F +V+ Q + D +S+ G K++I+DD
Sbjct: 15 GVFGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDC 74
Query: 163 W---QDTTNEFQIEGEPFAEGTQFGGRLASIKENNKF 196
W +D+ + + F G G +A NN F
Sbjct: 75 WSSGRDSDGFLVADEQKFPNGM---GHVADHLHNNSF 108
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 77 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 134
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 135 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGESNSGMHLMIGILAAL----EIRHKT 189
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 190 GRGQKVAVAMQDAVLNLVR 208
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 77 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 134
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 135 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 189
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 190 GRGQKVAVAMQDAVLNLVR 208
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 77 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 134
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 135 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGXSNSGMHLMIGILAAL----EIRHKT 189
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 190 GRGQKVAVAMQDAVLNLVR 208
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 96 ESMKILETHLGTFSIRETKQLPGMLDWFGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK 155
E ++LE + + PG LD G+ TW+ + QE+NP+ I +K +EG
Sbjct: 78 EGKELLEQMIKKADVMVENFGPGALDRMGF-TWE-YIQELNPRVILASVKGYAEGHANEH 135
Query: 156 FLIIDD-----GWQDTTNEFQIEGEPFAEGTQFG----------GRLASIKENNKFRGTT 200
+ ++ G T F +G P G G G LA++ + R T
Sbjct: 136 LKVYENVAQCSGGAAATTGFW-DGPPTVSGAALGDSNSGMHLMIGILAAL----EIRHKT 190
Query: 201 GDDQKETSGLKDFVLDIKK 219
G QK ++D VL++ +
Sbjct: 191 GRGQKVAVAMQDAVLNLVR 209
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 123 FGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPAK---FLIIDDGWQDTTNE 169
GW +W++F +++ IK + + G PA ++ ID+GW T +
Sbjct: 14 MGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRD 63
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 379 KNPTTQTLHIAAVAFNSIFLGEVVVPDWDMFYSQHCAAEFHAVARAVG------GCGVYV 432
K+ T +T + +A +S+ L + + ++ A + H+V A+G C V++
Sbjct: 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 128
Query: 433 SDKPGKHDFKILKRLVLADGSVLRAKYPGR 462
P D LK+ +A GS PGR
Sbjct: 129 GGTPLSQDKTRLKKCHIAVGS------PGR 152
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 123 FGWCTWDAFYQEVNPQGIKDGLKSLSEGGTPA---KFLIIDDGWQDTTNEFQ 171
GW +W+ FY +N Q I++ +L G +++ IDD W + + + Q
Sbjct: 11 MGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQ 62
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 137 PQGIKDGLKSLSEGGTPAKFLII-DDGWQDTTNEFQI 172
P G+ +++L EG A+FL++ DDG D++N FQ+
Sbjct: 135 PSGLPHSIQALEEG---AEFLLVFDDGSFDSSNTFQL 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,144,766
Number of Sequences: 62578
Number of extensions: 931129
Number of successful extensions: 2213
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2211
Number of HSP's gapped (non-prelim): 20
length of query: 674
length of database: 14,973,337
effective HSP length: 105
effective length of query: 569
effective length of database: 8,402,647
effective search space: 4781106143
effective search space used: 4781106143
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)