Query 005848
Match_columns 674
No_of_seqs 383 out of 2775
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5m_A Falcilysin; M16 metallo 100.0 1.5E-93 5.1E-98 839.0 57.3 670 1-674 99-1061(1193)
2 2fge_A Atprep2;, zinc metallop 100.0 2.1E-77 7.2E-82 713.5 64.9 663 2-674 51-866 (995)
3 3cww_A Insulysin, insulin-degr 100.0 6E-54 2E-58 511.8 38.0 606 11-673 62-814 (990)
4 1q2l_A Protease III; hydrolase 100.0 7.2E-52 2.5E-56 491.4 41.3 601 11-668 48-783 (939)
5 3hdi_A Processing protease; CA 100.0 1E-34 3.5E-39 312.8 26.8 278 364-668 6-288 (421)
6 3eoq_A Putative zinc protease; 100.0 6E-35 2.1E-39 313.0 24.2 279 364-669 6-289 (406)
7 1pp9_A Ubiquinol-cytochrome C 100.0 1.1E-33 3.8E-38 307.0 24.5 283 364-674 18-320 (446)
8 3eoq_A Putative zinc protease; 100.0 2.5E-34 8.5E-39 308.2 18.5 294 10-328 28-341 (406)
9 1hr6_B Beta-MPP, mitochondrial 100.0 1.1E-32 3.6E-37 299.1 26.1 278 364-668 11-309 (443)
10 3ami_A Zinc peptidase; alpha/b 100.0 7.4E-33 2.5E-37 300.4 20.4 298 11-329 34-359 (445)
11 3gwb_A Peptidase M16 inactive 100.0 1.2E-32 4E-37 298.0 21.8 282 364-670 18-306 (434)
12 3ami_A Zinc peptidase; alpha/b 100.0 4.3E-32 1.5E-36 294.4 23.9 281 364-668 11-302 (445)
13 3hdi_A Processing protease; CA 100.0 1.9E-32 6.5E-37 295.1 19.7 292 11-327 29-340 (421)
14 1hr6_A Alpha-MPP, mitochondria 100.0 1.9E-31 6.5E-36 291.7 20.4 281 364-674 10-316 (475)
15 1pp9_A Ubiquinol-cytochrome C 100.0 3.6E-31 1.2E-35 287.2 22.4 294 11-328 40-364 (446)
16 3amj_B Zinc peptidase inactive 100.0 5.2E-31 1.8E-35 284.1 23.1 279 364-669 8-298 (424)
17 1hr6_B Beta-MPP, mitochondrial 100.0 1.9E-30 6.5E-35 281.4 19.5 293 11-327 34-363 (443)
18 1pp9_B Ubiquinol-cytochrome C 100.0 4.3E-30 1.5E-34 278.2 20.6 274 364-668 28-314 (439)
19 1hr6_A Alpha-MPP, mitochondria 100.0 8.4E-30 2.9E-34 278.6 21.0 293 11-328 32-364 (475)
20 3d3y_A Uncharacterized protein 100.0 2.3E-29 8E-34 271.2 22.3 286 364-674 7-315 (425)
21 3gwb_A Peptidase M16 inactive 100.0 1.4E-28 4.9E-33 265.8 20.1 293 11-327 41-356 (434)
22 3cx5_A Cytochrome B-C1 complex 100.0 1E-28 3.4E-33 266.8 17.9 269 364-668 5-294 (431)
23 3amj_B Zinc peptidase inactive 100.0 6.7E-29 2.3E-33 267.6 16.3 293 11-327 31-349 (424)
24 3go9_A Insulinase family prote 100.0 1.6E-28 5.5E-33 268.7 16.5 275 364-669 30-325 (492)
25 1q2l_A Protease III; hydrolase 100.0 1.8E-27 6E-32 282.2 24.4 281 364-667 25-317 (939)
26 1pp9_B Ubiquinol-cytochrome C 100.0 2E-27 6.9E-32 257.2 22.3 291 11-328 50-367 (439)
27 3go9_A Insulinase family prote 100.0 2.4E-28 8.1E-33 267.3 12.9 290 10-327 54-374 (492)
28 3cww_A Insulysin, insulin-degr 99.9 4.4E-27 1.5E-31 280.2 24.6 284 364-668 39-335 (990)
29 3cx5_A Cytochrome B-C1 complex 99.9 4.3E-27 1.5E-31 253.9 17.6 287 11-328 28-347 (431)
30 3d3y_A Uncharacterized protein 99.9 9.8E-27 3.4E-31 250.6 15.2 294 11-329 30-361 (425)
31 3cx5_B Cytochrome B-C1 complex 99.9 5.2E-26 1.8E-30 238.6 16.6 250 369-660 1-255 (352)
32 3s5m_A Falcilysin; M16 metallo 99.9 7.2E-26 2.5E-30 266.3 18.6 275 364-668 91-450 (1193)
33 3cx5_B Cytochrome B-C1 complex 99.9 4.6E-26 1.6E-30 239.0 13.3 175 11-212 18-194 (352)
34 2fge_A Atprep2;, zinc metallop 99.9 2E-24 6.7E-29 257.3 14.0 274 364-668 42-353 (995)
35 3ih6_A Putative zinc protease; 98.6 2.5E-08 8.7E-13 94.3 3.6 58 611-668 17-77 (197)
36 3ih6_A Putative zinc protease; 97.0 0.0097 3.3E-07 55.3 13.4 167 381-573 24-194 (197)
37 1g6u_A Domain swapped dimer; d 65.5 18 0.00062 22.7 5.1 29 300-328 3-32 (48)
No 1
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.5e-93 Score=838.97 Aligned_cols=670 Identities=28% Similarity=0.466 Sum_probs=578.7
Q ss_pred CceeecCC---CcEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCH
Q 005848 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (674)
Q Consensus 1 ~~~~~~d~---~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~ 77 (674)
+|+.++|+ +++|.+|+++||.+.+|+|||+|||+|+||++||..+++.++..+.+|+++||+|+.|+|+|++.+.+.
T Consensus 99 l~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~ 178 (1193)
T 3s5m_A 99 ISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNN 178 (1193)
T ss_dssp EEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSH
T ss_pred EEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCH
Confidence 35667765 478999999999999999999999999999999999988888766689999999999999999987788
Q ss_pred hhHHHHHHHHHhhhhCCCCccccchhhhcccccccCCC--------------CCCccchhHHHHHhhhccCChHHHHHHH
Q 005848 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (674)
Q Consensus 78 ~~~~~~l~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~--------------~~~~~~~~~v~~e~~~~~~~p~~~~~~~ 143 (674)
++++++|++++|++++|.|++++.+|.+|+||+|+++. +.++..|++|++||++..++|..++.+.
T Consensus 179 ~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~ 258 (1193)
T 3s5m_A 179 KDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE 258 (1193)
T ss_dssp HHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999999999999999987789999999998632 2345568999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccc----------
Q 005848 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF---------- 213 (674)
Q Consensus 144 ~~~~~~~~~p~~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~---------- 213 (674)
+.+.+|++|||+++++|++++|+++|++++++||++||+|+|++|+++||+|+++++++++ ..|+.++.
T Consensus 259 l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~-~~f~~~~~~~~~~~~~~~ 337 (1193)
T 3s5m_A 259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVD-QYLGQLDYSKYRDDAVES 337 (1193)
T ss_dssp HHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHH-HHHTTCCGGGCCCCCCCC
T ss_pred HHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHH-HHhccCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999986 21111100
Q ss_pred ------------------------------------------c-----------------------------ccc-----
Q 005848 214 ------------------------------------------S-----------------------------LRE----- 217 (674)
Q Consensus 214 ------------------------------------------~-----------------------------~~~----- 217 (674)
. ..+
T Consensus 338 ~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~ 417 (1193)
T 3s5m_A 338 VEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLL 417 (1193)
T ss_dssp CCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHH
T ss_pred cCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHHH
Confidence 0 000
Q ss_pred -----------------------------------------------cCC------------CCc---------------
Q 005848 218 -----------------------------------------------NNT------------GSF--------------- 223 (674)
Q Consensus 218 -----------------------------------------------~~~------------~~~--------------- 223 (674)
... ..+
T Consensus 418 vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g 497 (1193)
T 3s5m_A 418 IINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG 497 (1193)
T ss_dssp HHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 000 000
Q ss_pred ------------------------chhHHHHHHhhhhcccCCCccccccccchHHHHHHHHHccCCcchHHHHHHHhhcc
Q 005848 224 ------------------------PRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN 279 (674)
Q Consensus 224 ------------------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~~~~ 279 (674)
|.|+.+.......|.+++||...+.+...++.|++.+.. ++.+++.++++|+.+
T Consensus 498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~--~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKN--EPMYLEKFVEKHFIN 575 (1193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHH--STTHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhcc
Confidence 001111112234677788888888888889999988854 245999999999998
Q ss_pred CCCeEEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCChhhhccCCCCCCCCCCCCCCCC
Q 005848 280 NPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRV 359 (674)
Q Consensus 280 ~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~~~~e~l~~lp~l~~~di~~~~~~~ 359 (674)
|.|++++++.|++++.++..+.+++.|++++..+|++|++++.++.+.+.++|+++++++++++||+|+++||++....+
T Consensus 576 n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~ 655 (1193)
T 3s5m_A 576 NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEV 655 (1193)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCC
T ss_pred CCceEEEEEEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred Cccc--------------------------------------------------------------cccCCceEEEeecC
Q 005848 360 PTEV--------------------------------------------------------------GDINGVKVLQHDLF 377 (674)
Q Consensus 360 ~~~~--------------------------------------------------------------~~~nG~~v~~~~~~ 377 (674)
|..+ ...||++|++++.+
T Consensus 656 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 735 (1193)
T 3s5m_A 656 PVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMP 735 (1193)
T ss_dssp CCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCeEEEEEECC
Confidence 7652 01379999999999
Q ss_pred CCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC------CCCCCeeEE
Q 005848 378 TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH------GKEDPCCCM 451 (674)
Q Consensus 378 ~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~------~~~~~~~~~ 451 (674)
||||||++++|+++.+++++++++++|+.+|++.||+++|+.||+++|+.++||+++++...+.. +.....+++
T Consensus 736 TNGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 736 TTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp CTTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CCCeEEEEEEEECCCCCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 99999999999999999999999999999999999999999999999999999999998754311 112236889
Q ss_pred EEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHH
Q 005848 452 VVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYL 531 (674)
Q Consensus 452 ~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~ 531 (674)
.++++||.++++++++|++++|++|.|++.+|+++++++.++.+++.+.++||.+|+.++.+.+++.+++.+.++|++++
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCC----CC-----------c
Q 005848 532 EFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN----SP-----------V 596 (674)
Q Consensus 532 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~----~~-----------~ 596 (674)
.+++++.++++++++.++++|+++|+++|+++|++++|+|+.+..+++.+.+++++++|+.. .. +
T Consensus 896 ~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 975 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDP 975 (1193)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCC
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999976677777777777665420 00 0
Q ss_pred cccccc---------ccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhcCccchHHHhhcCCCCCccccc
Q 005848 597 ERVKWK---------AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF 667 (674)
Q Consensus 597 ~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~IRekG~aYg~~~~~ 667 (674)
....+. ......++.+..|.+|+|++.|++..+.++||++++.|+++|||++|||++|||||||||++|++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~ 1055 (1193)
T 3s5m_A 976 TVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADI 1055 (1193)
T ss_dssp CCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEE
T ss_pred cccccccccccccccccccccceeEecCCcceEEEEEecCCCCCCCchHHHHHHHHHHCccHHHHHHHhcCCeeEEEEec
Confidence 000010 01134567889999999999999999999999999999999999999999999998899999998
Q ss_pred CCCCCCC
Q 005848 668 DSHSGVL 674 (674)
Q Consensus 668 ~~~~G~f 674 (674)
. ..|.|
T Consensus 1056 ~-~~G~f 1061 (1193)
T 3s5m_A 1056 E-YDGSV 1061 (1193)
T ss_dssp C-TTSEE
T ss_pred c-CCCcE
Confidence 7 66754
No 2
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.1e-77 Score=713.52 Aligned_cols=663 Identities=75% Similarity=1.209 Sum_probs=542.0
Q ss_pred ceeecCCCcEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHH
Q 005848 2 SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFY 81 (674)
Q Consensus 2 ~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~ 81 (674)
++.+.+.+.+|.+|+++|+.+++|+|||||||+|+||++||..+++.+++.+.+|+++||+|+.|+|+|++.+.+.++++
T Consensus 51 ~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~ 130 (995)
T 2fge_A 51 SVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFY 130 (995)
T ss_dssp EEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHH
T ss_pred EEEcCCCccEEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHH
Confidence 55667788999999999999999999999999999999999999888988888999999999999999998777889999
Q ss_pred HHHHHHHhhhhCCCC--ccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCC
Q 005848 82 NLVDVYFDAVFFPKC--VEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSG 159 (674)
Q Consensus 82 ~~l~l~~d~~~~P~~--~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~ 159 (674)
++|++++|++++|.| ++++ |.+|+||+|+++.+.++++|++|++||++..++|..++.+.+.+.+|++|||+++++
T Consensus 131 ~~l~~~~d~~~~p~~~~~~~~--~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~ 208 (995)
T 2fge_A 131 NLVDVYLDAVFFPKCVDDAHT--FQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSG 208 (995)
T ss_dssp HHHHHHHHHHHSBGGGTSSHH--HHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTT
T ss_pred HHHHHHHHHHhCCCCCCCHHH--HHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 999999999999999 8888 999999999988888889999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhccccccc--c-----------cc--c-----cc-
Q 005848 160 GDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIE--F-----------SL--R-----EN- 218 (674)
Q Consensus 160 G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e--~-----------~~--~-----~~- 218 (674)
|++++|+++|+++|++||++||+|+||+|+++||+|+++++++|+ ..|+.++ . .. . ..
T Consensus 209 G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (995)
T 2fge_A 209 GDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLS-EYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYP 287 (995)
T ss_dssp CCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHH-HHHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEE
T ss_pred CChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHH-HHHhhCCccccCCCcccCCCCCCCCCceEEEecc
Confidence 999999999999999999999999999999999999999999996 4443222 0 00 0 00
Q ss_pred ----CC-C------------Ccc-hh-----HHHHHHhh--------------h--------h-cc--------------
Q 005848 219 ----NT-G------------SFP-RG-----LSLMLRSM--------------G--------K-WI-------------- 238 (674)
Q Consensus 219 ----~~-~------------~~p-~~-----~~~~~~~~--------------~--------~-~~-------------- 238 (674)
.. . ... .. +.++...+ . . +.
T Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~ 367 (995)
T 2fge_A 288 AGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKG 367 (995)
T ss_dssp CCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEE
T ss_pred cCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEe
Confidence 00 0 000 00 00000000 0 0 00
Q ss_pred ----------------------cCCC--cccc----c----c--c----cc--------------------------hHH
Q 005848 239 ----------------------YDMN--PFEP----L----K--Y----EK--------------------------PLM 254 (674)
Q Consensus 239 ----------------------~~~~--~~~~----l----~--~----~~--------------------------~l~ 254 (674)
.+.+ ..+. + . . .. .++
T Consensus 368 ~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (995)
T 2fge_A 368 VSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLK 447 (995)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHH
Confidence 0000 0000 0 0 0 00 011
Q ss_pred HHHHHHHccCCcc----hHHHHHHHhhccCCCeEEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 005848 255 ALKARLAEEGSKA----VFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRL 330 (674)
Q Consensus 255 ~l~~~l~~~~s~~----~~~~l~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~ 330 (674)
.+...+. .. .++.++++++..+.+++.+.+.|+++..+...+.+.+.++..+..+++++++++.++...+..
T Consensus 448 ~~~~~~~----~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 523 (995)
T 2fge_A 448 ALKTRIA----EEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKL 523 (995)
T ss_dssp HHHHHHH----HHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1111110 12 456667777765667888888999888777777788888888888999999999998888888
Q ss_pred HhCCCCChhhhccCCCCCCCCCCCCCCCCCccccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhh
Q 005848 331 KQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKE 410 (674)
Q Consensus 331 ~~~~~~~~e~l~~lp~l~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 410 (674)
++..+.+++.++.+|.+.+.||++....++......||++|++++.+++|+++++++|++|+++++..+++++++++|..
T Consensus 524 ~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 603 (995)
T 2fge_A 524 KQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLE 603 (995)
T ss_dssp HHTSCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHHHHHHHH
T ss_pred HhcCCCChHHHHhcCCCCHhhcCccCCCCCceeeecCCceEEEEecCCCCeEEEEEEeeCCCCCHHHhhhHHHHHHHHHh
Confidence 98888888889999999999998876667766667899999999999999999999999999987888999999999988
Q ss_pred cCCCCCCHHHHHHHHhhcccceEE-eeeeccCCCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 005848 411 MGTKDLSFVQLDQLIGRKTGGISV-YPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVS 489 (674)
Q Consensus 411 ~Gt~~~~~~el~~~i~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~ 489 (674)
.||+++++.||.+.++..+|++++ ++.. ...+.+.+.+.+.++++++.++++.+++|+.+++++|.|++.++++.++.
T Consensus 604 ~Gt~~~s~~el~~~l~~~~ggl~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~ 682 (995)
T 2fge_A 604 MGTKDLTFVQLNQLIGRKTGGISVYPLTS-SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVS 682 (995)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEEEEE-EETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCceEeecccc-ccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999988888888 4322 00111124488999999999999999999999999999996449999999
Q ss_pred HHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEE
Q 005848 490 QSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINM 569 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v 569 (674)
+.++.+++...++++.+|..++.+.+++.+++.+..+|++++.+++.+.+.+++.++.+.++|++||+++|++++++++|
T Consensus 683 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v 762 (995)
T 2fge_A 683 QSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNM 762 (995)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEE
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCcCCcEEEE
Confidence 99999999988899999999999999999999999999999999988876666778888999999999999999999999
Q ss_pred EeCCcchhhHHHHHHHHHhcC-CCCCCcccccccccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhcCc
Q 005848 570 TADGKNLKNSERFVGKFLDML-PTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNV 648 (674)
Q Consensus 570 ~Gd~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~s 648 (674)
+||++..+++.+.++++++.| |..... ......+.....+.+..|.+++|++.+++.++++++|++++.|+++|||.+
T Consensus 763 ~Gd~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~~ 841 (995)
T 2fge_A 763 TADGKSLTNVEKSVAKFLDLLPENPSGG-LVTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNT 841 (995)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCSSCSSC-SCCCCCCCCCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHhhCccCCCC-CCcccccCCccceEEEecCceEEEEEecCCCCCCCcccHHHHHHHHHHCCC
Confidence 999974478999999999999 754332 111111112234556678889999888888889999999999999999988
Q ss_pred cchHHHhhcCCCCCcccccCCCCCCC
Q 005848 649 WLWDRVRVSGGAYGGFCDFDSHSGVL 674 (674)
Q Consensus 649 ~L~~~IRekG~aYg~~~~~~~~~G~f 674 (674)
+||++|||+|||||+++++.. .|+|
T Consensus 842 ~L~~~iRe~g~aYg~~s~~~~-~G~~ 866 (995)
T 2fge_A 842 WLWDRVRVSGGAYGGFCDFDS-HSGV 866 (995)
T ss_dssp HHHHHTTTTTCCSEEEEEEET-TTTE
T ss_pred ccHHHhhhcCCCcccceEeCC-CccE
Confidence 999999999999999999886 5764
No 3
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=6e-54 Score=511.81 Aligned_cols=606 Identities=14% Similarity=0.081 Sum_probs=430.1
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|+++||.+.+|+|||||||+|+||++||..+.+.+++.+ +|+++||+|+.|+|+|++.+ +.++++.+|+++.++
T Consensus 62 ~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~-~Gg~~NA~T~~d~T~y~~~~-~~~~l~~~l~~~~d~ 139 (990)
T 3cww_A 62 DVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSE-HAGSSNAFTSGEHTNYYFDV-SHEHLEGALDRFAQF 139 (990)
T ss_dssp EESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHT-TTCEEEEEECSSCEEEEEEE-EGGGHHHHHHHHHGG
T ss_pred EecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHH-cCCceeEEECCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999999986668888866 79999999999999999854 667999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC--
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL-- 168 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~l-- 168 (674)
+++|.|++++ |++| |++|++|++...++|..++.+.+...+|++|||+++++|++++|+++
T Consensus 140 ~~~p~f~~~~--~~~E---------------~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~ 202 (990)
T 3cww_A 140 FLSPLFDESA--KDRE---------------VNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPN 202 (990)
T ss_dssp GTCBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHH
T ss_pred HhCcCCCHHH--HHHH---------------HHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccc
Confidence 9999999999 9988 99999999998899999999999999999999999999999999999
Q ss_pred -----CHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC-CCCcchhHH-----HH-H-----
Q 005848 169 -----TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-TGSFPRGLS-----LM-L----- 231 (674)
Q Consensus 169 -----t~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~-~~~~p~~~~-----~~-~----- 231 (674)
++++|++||++||+|+||+|+++||+|+++++++|+ ..|+.++....... ....|.... .. .
T Consensus 203 ~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (990)
T 3cww_A 203 QEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVV-KLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDI 281 (990)
T ss_dssp HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHH-HHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEECCSSSC
T ss_pred cccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHH-HHhcCCccCCCCCCCCCCCCCChHHcCeEEEEEECCCC
Confidence 999999999999999999999999999999999995 66665543211000 000010000 00 0
Q ss_pred -HhhhhcccCCCccccccccchHHHHHHHHHccCCcchHHHHHHHhhcc-----------CCCeEEEEEecCc---Cchh
Q 005848 232 -RSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN-----------NPHCVTVEMQPDP---EKAS 296 (674)
Q Consensus 232 -~~~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~~~~-----------~~~~~~i~~~~d~---~~~~ 296 (674)
...-.|..... ........+..+...|++...++++..++++.+.. ....+.+.+.+.+ +..+
T Consensus 282 ~~l~~~~~~~~~--~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~ 359 (990)
T 3cww_A 282 RNLYVTFPIPDL--QKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVE 359 (990)
T ss_dssp CEEEEEEEECCC--GGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHH
T ss_pred cEEEEEEEcCCh--hhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCCCCccEEEEEEEEChHHhhhHH
Confidence 00001111100 00011235666777776422234677777653321 1123455555443 3667
Q ss_pred hHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCCh----------------hhh----c-------------
Q 005848 297 RDEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPP----------------EAL----R------------- 342 (674)
Q Consensus 297 ~~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~~~----------------e~l----~------------- 342 (674)
+..+.+.++|+.+ +.|++++++++++............ .++ +.+ .
T Consensus 360 ~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~ 438 (990)
T 3cww_A 360 DIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDK-ERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMV 438 (990)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCC-CCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCc-CCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHHHHH
Confidence 7778889999988 8899999999887643322111111 111 000 0
Q ss_pred --------------------------------------------------------------cCCC-CCCCCCCCCCCCC
Q 005848 343 --------------------------------------------------------------SVPS-LSLRDIPKEPIRV 359 (674)
Q Consensus 343 --------------------------------------------------------------~lp~-l~~~di~~~~~~~ 359 (674)
.+|. +++.|++......
T Consensus 439 ~~~l~~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~ 518 (990)
T 3cww_A 439 LDKLRPENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPY 518 (990)
T ss_dssp HTTCSGGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSS
T ss_pred HHhcCHhHEEEEEEcCCCCCCcCcccceeCceeeeecCCHHHHHHhhcCCCCccccCCCCCCCCCcccccccCCCCCCCC
Confidence 0011 1122222111122
Q ss_pred CccccccCCceEEEeecCC----CcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEe
Q 005848 360 PTEVGDINGVKVLQHDLFT----NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVY 435 (674)
Q Consensus 360 ~~~~~~~nG~~v~~~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~ 435 (674)
|......||++|++++.++ ++.+++.+.++.+..+.+..++++++..++... ++..++...+. |.+++++
T Consensus 519 p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~----~~~~~~~~~l~--G~~~~~~ 592 (990)
T 3cww_A 519 PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS----LNEYAYAAELA--GLSYDLQ 592 (990)
T ss_dssp CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHT--TEEEEEE
T ss_pred CeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH----HHHhhhHHHhC--CeEEEEE
Confidence 3233457899999998776 667888888777776666667888988877652 35666666663 4444444
Q ss_pred eeeccCCCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhc
Q 005848 436 PFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKL 515 (674)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 515 (674)
+.. +.+.+++++++++++.+++++.+++++|.|+ +++++.++.+.+..+++...++|+.++...+.+.+
T Consensus 593 ~~~----------~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l 661 (990)
T 3cww_A 593 NTI----------YGMYLSVKGYNDKQPILLKKIIEKMATFEID-EARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLM 661 (990)
T ss_dssp EET----------TEEEEEEEEESTTHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred EcC----------CeEEEEEEeccHhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHh
Confidence 433 6799999999999999999999999999998 58999999999999999888788999999988888
Q ss_pred ChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHH---HHHHHhcCCC
Q 005848 516 NTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERF---VGKFLDMLPT 592 (674)
Q Consensus 516 ~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~---l~~~~~~l~~ 592 (674)
++ +++ ...++.+.|++++ .++|.+|++++|++.++.+.|+||++ .+++.+. +.++++.+|.
T Consensus 662 ~~-~~~----~~~~~~~~l~~lt----------~~~l~~~~~~~~~~~~~~~~v~Gn~~-~~~~~~~~~~~~~~l~~l~~ 725 (990)
T 3cww_A 662 TE-VAW----TKDELKEALADVT----------LPRLKAFIPQLLSRLHIEALLHGNIT-KQAALGIMQMVEDTLIEHAH 725 (990)
T ss_dssp BS-SCC----CHHHHHHHHTTCC----------HHHHHHHHHHHHHEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CCC----CHHHHHHHHhcCC----------HHHHHHHHHHHHhhheEEEEEEcCCC-HHHHHHHHHHHHHHHhccCC
Confidence 75 222 2223455555442 58899999999999999999999997 5677666 6778887764
Q ss_pred CCCcccc----cccccCCCC-cEEE--EcCcCeeEEEEe-cccCCCCCCcchHHHHHHHHhcCccchHHHhhc-CCCCCc
Q 005848 593 NSPVERV----KWKAHLPSA-NEAI--VIPTQVNYVGKA-ANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGG 663 (674)
Q Consensus 593 ~~~~~~~----~~~~~~~~~-~~~~--~~~~~~~~v~~~-~~~~~~~~~d~~al~vl~~iLg~s~L~~~IRek-G~aYg~ 663 (674)
..+.... ......+.. ...+ ..+..+++++.. .....+++++++++.|+++||+ ++|+++|||+ ||+||+
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~-~~lf~~LRek~~lgY~v 804 (990)
T 3cww_A 726 TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIIS-EPAFNTLRTKEQLGYIV 804 (990)
T ss_dssp CEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-HHHHHHHTTTTCCCSEE
T ss_pred CCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHH-HHHHHHHHhccCCcEEE
Confidence 3111000 001111111 2223 344556665544 4444688899999999999996 7899999996 999999
Q ss_pred ccccCCCCCC
Q 005848 664 FCDFDSHSGV 673 (674)
Q Consensus 664 ~~~~~~~~G~ 673 (674)
+|++....|.
T Consensus 805 ~s~~~~~~g~ 814 (990)
T 3cww_A 805 FSGPRRANGI 814 (990)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEeeCCE
Confidence 9988755553
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.2e-52 Score=491.41 Aligned_cols=601 Identities=14% Similarity=0.118 Sum_probs=417.3
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.+..|+|||||||+|+||++||..+.+.+.+. ..|+.+||+|+.|+|+|++. ++.++++.+|+++.|+
T Consensus 48 ~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~-~~Gg~~NA~T~~d~T~y~~~-~~~~~l~~~L~~l~d~ 125 (939)
T 1q2l_A 48 VVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLK-MHGGSHNASTAPYRTAFYLE-VENDALPGAVDRLADA 125 (939)
T ss_dssp EESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHH-TTTCEEEEEECSSCEEEEEE-ECGGGHHHHHHHHHHH
T ss_pred EeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHH-HcCCcceEEECCCcEEEEEE-eCHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999997645778884 45999999999999999974 5889999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC---
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK--- 167 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~--- 167 (674)
+.+|.|++++ |++| |++|++|++...++|..++.+.+.+.+|++|||+++++|++++|.+
T Consensus 126 ~~~p~f~~~~--~~~E---------------r~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~ 188 (939)
T 1q2l_A 126 IAEPLLDKKY--AERE---------------RNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPG 188 (939)
T ss_dssp HHCBCCCSTT--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTT
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCC
Confidence 9999999999 9988 9999999999999999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccCCCCcc----hhHHHHHH---------h
Q 005848 168 -LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFP----RGLSLMLR---------S 233 (674)
Q Consensus 168 -lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~~~~~p----~~~~~~~~---------~ 233 (674)
+++++|++||++||+|+||+|+++||+|++++.++++ ..|+.++...........| ........ .
T Consensus 189 ~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (939)
T 1q2l_A 189 NPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAA-DTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVL 267 (939)
T ss_dssp BCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHH-HTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSSCCCEE
T ss_pred chHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHH-HHhhhhccCCCCCCCCCCCCCCHHHcCEEEEEEeCCCCcEE
Confidence 9999999999999999999999999999999999995 7776654321110000000 00000000 0
Q ss_pred hhhcccCCCccccccccchHHHHHHHHHccCCcchHHHHHHHhhcc------------CCCeEEEEEecCc---CchhhH
Q 005848 234 MGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN------------NPHCVTVEMQPDP---EKASRD 298 (674)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~~~~------------~~~~~~i~~~~d~---~~~~~~ 298 (674)
.-.|..... ..-.....+..+...|++..++++++.++++.+.. ....+.+.+.+.+ +..++.
T Consensus 268 ~i~~~~~~~--~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~ 345 (939)
T 1q2l_A 268 RVEFRIDNN--SAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQV 345 (939)
T ss_dssp EEEEEEECC--GGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHH
T ss_pred EEEEEcCCh--HHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHH
Confidence 001100000 00001235677778888766677899888664320 1123455556554 366777
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCC---------------hhhh----ccCCCCCCCC-------
Q 005848 299 EAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDP---------------PEAL----RSVPSLSLRD------- 351 (674)
Q Consensus 299 ~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~~~~~~~~~---------------~e~l----~~lp~l~~~d------- 351 (674)
.+.+.++|+.+ +.|++++|++++|+.+...........+ ++.+ ..+..++++|
T Consensus 346 ~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~ 425 (939)
T 1q2l_A 346 VAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAM 425 (939)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHHh
Confidence 78889999988 7899999999999876543332221111 0010 0011111100
Q ss_pred --------------------------------CC-------------------CCC---------------CCCCccccc
Q 005848 352 --------------------------------IP-------------------KEP---------------IRVPTEVGD 365 (674)
Q Consensus 352 --------------------------------i~-------------------~~~---------------~~~~~~~~~ 365 (674)
++ ... ...|.....
T Consensus 426 l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l 505 (939)
T 1q2l_A 426 MTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVD 505 (939)
T ss_dssp CSGGGCEEEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEE
T ss_pred cCHHHcEEEEEcCCCCCCcccceeCCeeeeeeCCHHHHHHHhccCccccccCCCCCcCCCcCcccccCcCCCCCCEEEEE
Confidence 10 000 001111235
Q ss_pred cCCceEEEeecCC--C-cEEEEEEEeeCCCC--CcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc
Q 005848 366 INGVKVLQHDLFT--N-DVLYTEVVFDMSSL--KQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (674)
Q Consensus 366 ~nG~~v~~~~~~~--~-~~v~~~~~~~~g~~--~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~ 440 (674)
.||++|++.+.+. . |.+.+.+.+..+.. +.+..+..+++..++. .|+.++ ++...+. |.+++++. .
T Consensus 506 ~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~-~g~~~~---~~~~~l~--G~~~~~~~-~-- 576 (939)
T 1q2l_A 506 ESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAG-LALDQL---SNQASVG--GISFSTNA-N-- 576 (939)
T ss_dssp ETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHH-HHHHHH---HHHHHHT--TEEEEEEE-S--
T ss_pred CCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHH-HHHHHH---hhHHHHc--CcEEEEee-C--
Confidence 7899999998764 2 37777777776543 2344466777777665 576655 3444444 44444444 3
Q ss_pred CCCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhh
Q 005848 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (674)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (674)
+.+.+++++.+++++.+++++.+++++|.|+ +++++.++++.+..+.+...+++...+...+...++...
T Consensus 577 --------~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~-~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~- 646 (939)
T 1q2l_A 577 --------NGLMVNANGYTQRLPQLFQALLEGYFSYTAT-EDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY- 646 (939)
T ss_dssp --------SEEEEEEEEESSSHHHHHHHHHHHHHHCCCC-SHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSC-
T ss_pred --------CcEEEEEEcccHhHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCC-
Confidence 6788999999999999999999999999999 588999999999999887666777878888877776531
Q ss_pred HHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccc
Q 005848 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (674)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 600 (674)
+...++.+.|..+ ..++|++||+++|.+.++.+.|+||++ .++++++++++++.|+.........
T Consensus 647 ----~~~~~~~~~l~~i----------t~~~l~~f~~~~~~~~~~~~~vvGn~~-~~~~~~l~~~~~~~l~~~~~~~~~~ 711 (939)
T 1q2l_A 647 ----FSRDERRKILPSI----------TLKEVLAYRDALKSGARPEFMVIGNMT-EAQATTLARDVQKQLGADGSEWCRN 711 (939)
T ss_dssp ----CCHHHHHHHGGGC----------CHHHHHHHHHHHHTTCEEEEEEEESCC-HHHHHHHHHHHHHHHTCCCSCCCCC
T ss_pred ----CCHHHHHHHHhcC----------CHHHHHHHHHHHHhhheEEEEEEcCCC-HHHHHHHHHHHHHHHccCCcccccc
Confidence 2333344444433 258999999999999999999999998 6789999999999887543211110
Q ss_pred -ccccCCCCcEEEEcCc--CeeEE-EEecccCCCCCCcchHHHHHHHHhcCccchHHHhhc-CCCCCcccccC
Q 005848 601 -WKAHLPSANEAIVIPT--QVNYV-GKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFD 668 (674)
Q Consensus 601 -~~~~~~~~~~~~~~~~--~~~~v-~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~IRek-G~aYg~~~~~~ 668 (674)
...........+..+. .++.+ ...++....+.++...+.+|..++ +++||++|||+ |++|++++++.
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~-~s~lf~~LRek~gl~Y~v~s~~~ 783 (939)
T 1q2l_A 712 KDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIV-QPWFYNQLRTEEQLGYAVFAFPM 783 (939)
T ss_dssp EEECCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHH-HHHHTHHHHTSCCSSSCEEEEEE
T ss_pred ceEEeCCCceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCceeeeeEe
Confidence 0111111111222332 33444 455554433334445555555555 58999999997 99999999875
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1e-34 Score=312.80 Aligned_cols=278 Identities=10% Similarity=0.064 Sum_probs=225.2
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.++.+++++.++|++|+..+ ....++++|.++|++.||+++++.+|.+.++.+||++|++++.
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~---- 81 (421)
T 3hdi_A 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK---- 81 (421)
T ss_dssp ECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS----
T ss_pred EcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc----
Confidence 46799999999999999999999999999877 4556777777667778999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHH
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (674)
+.++|+++++.+++++++++++|++++|.|++ ++++..+...+..+.... +++..++...+...++++|+++
T Consensus 82 ------d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~ 153 (421)
T 3hdi_A 82 ------EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQK-EELEKERKVVFEEIKMVD-DTPDDIVHDLLSSATYGKHSLG 153 (421)
T ss_dssp ------SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTSGGG
T ss_pred ------ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCCC
Confidence 88999999999999999999999999999994 444443333334333322 3455788888888888888887
Q ss_pred HHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccccc
Q 005848 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (674)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 602 (674)
....| +.+.+..++ .++|++||+++|+|+|++++|+||++ +++++.++++|+.||........ ..
T Consensus 154 ~~~~G--~~~~l~~it----------~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v~~~f~~~~~~~~~~~~-~~ 218 (421)
T 3hdi_A 154 YPILG--TVETLNSFN----------EGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKIKETFSQVKPTTYNYQG-EK 218 (421)
T ss_dssp SCTTC--CHHHHHHCC----------HHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHHHHHTTSSCCCCCCCCC-CC
T ss_pred CCCcC--CHHHHHhCC----------HHHHHHHHHHhcCcccEEEEEEeCCC--HHHHHHHHHHhcCCCCCCCCCCC-CC
Confidence 65444 456666553 48999999999999999999999997 78999999999999875432111 11
Q ss_pred ccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc---CccchHHHhhc-CCCCCcccccC
Q 005848 603 AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFD 668 (674)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~IRek-G~aYg~~~~~~ 668 (674)
+...........+.+++++.+++++++++++|++++.|++.||| +||||++|||+ |+|||+++++.
T Consensus 219 ~~~~~~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~ 288 (421)
T 3hdi_A 219 PMFLPNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHS 288 (421)
T ss_dssp CCCCCCEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEE
T ss_pred CCCCCceEEecCCCCceEEEEEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeec
Confidence 11122333444567788999999999999999999999999998 59999999996 99999998776
No 6
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=6e-35 Score=312.98 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=226.9
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.+..+.+++.++|++|+..+ +...++++|+++|+++||++++..+|.+.++.+||.+|++++.
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~---- 81 (406)
T 3eoq_A 6 ELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE---- 81 (406)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS----
T ss_pred EcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC----
Confidence 46799999999999989999999999999876 4567777777777778999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHH
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (674)
+.++|++++++++++.++++++|++ +|.|++ ++++..+...++.+.... +++...+...+...++++|||+
T Consensus 82 ------d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~-~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~ 152 (406)
T 3eoq_A 82 ------EATVYYGAVLPEFAYDLLGLFAKLL-RPALRE-EDFQTEKLVILEEIARYQ-DRPGFMAYEWARARFFQGHPLG 152 (406)
T ss_dssp ------SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCH-HHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCGGG
T ss_pred ------CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCH-HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCC
Confidence 8899999999999999999999999 999995 444433333344443333 3455788888888888899987
Q ss_pred HHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccccc
Q 005848 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (674)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 602 (674)
+...| +.+.+..++ .++|++||+++|+|+|++++|+||++ .+++.+.++++|+.|+..+.+.. ..+
T Consensus 153 ~~~~G--~~~~i~~~t----------~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~-~~~ 218 (406)
T 3eoq_A 153 NSVLG--TRESITALT----------REGMAAYHRRRYLPKNMVLAATGRVD-FDRLLAEAERLTEAWPEGEAERA-YPP 218 (406)
T ss_dssp CCSSC--CHHHHHHCC----------HHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCCCCCCCCC-CCC
T ss_pred CCCcC--CHHHHhhCC----------HHHHHHHHHHhCCccCEEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCC-CCC
Confidence 65544 455666553 48999999999999999999999998 68899999999999986543211 111
Q ss_pred ccCCCCcEEEEcCc-CeeEEEEecccCCCCCCcchHHHHHHHHhc---CccchHHHhhcCCCCCcccccCC
Q 005848 603 AHLPSANEAIVIPT-QVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS 669 (674)
Q Consensus 603 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~IRekG~aYg~~~~~~~ 669 (674)
....+....+..|. ++.++.+++++++++++|++++.|++.||| +||||++|||+|+||++++++..
T Consensus 219 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~ 289 (406)
T 3eoq_A 219 LTPAFGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEE 289 (406)
T ss_dssp CCCCCEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEE
T ss_pred CCCCCceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecc
Confidence 11122233455677 788999999999999999999999999998 78999999999999999988763
No 7
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.1e-33 Score=307.01 Aligned_cols=283 Identities=14% Similarity=0.019 Sum_probs=226.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.+ ++++++.++|++|++.+ +...++++|.++|++.||++++..+|.+.++.+||++|++++.
T Consensus 18 ~L~NGl~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~---- 92 (446)
T 1pp9_A 18 QLDNGLRVASEQSS-QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTR---- 92 (446)
T ss_dssp ECTTCCEEEEEECS-CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECS----
T ss_pred ECCCCCEEEEEeCC-CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcC----
Confidence 46899999998876 57999999999999876 4556777766666678999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhh
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~--~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (674)
+.++|+++++.+++++++++++|++.+|.|++. ++++.++.+.+.... +++..++...+...++++|+
T Consensus 93 ------d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~----~~~~~~~~~~~~~~~~~~~~ 162 (446)
T 1pp9_A 93 ------EHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQEND----TSMRDVVFNYLHATAFQGTP 162 (446)
T ss_dssp ------SCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTTSG
T ss_pred ------CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhh----cCHHHHHHHHHHHHhcCCCC
Confidence 789999999999999999999999999999954 366666666665543 35567888888888888999
Q ss_pred HHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccc
Q 005848 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (674)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 600 (674)
|++...| +.+.|..+ ..++|++||+++|+|+|++|+|+||++ .+++.+.++++|+.|+....+...+
T Consensus 163 ~~~~~~G--~~~~l~~~----------~~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~ 229 (446)
T 1pp9_A 163 LAQSVEG--PSENVRKL----------SRADLTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLAQKHFSGLSGTYDEDAVP 229 (446)
T ss_dssp GGSCSSC--CHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCSCCCSSCCC
T ss_pred CCCCCcC--CHHHHHhC----------CHHHHHHHHHhccCCCCEEEEEEcCCC-HHHHHHHHHHHhccCCCCCCCCccc
Confidence 8765444 45666554 258999999999999999999999998 6889999999999998654321111
Q ss_pred cc-ccCCCCcEEE--EcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc------------CccchHHHhhcCCCCCccc
Q 005848 601 WK-AHLPSANEAI--VIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGFC 665 (674)
Q Consensus 601 ~~-~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~IRekG~aYg~~~ 665 (674)
++ .+.....+.+ ..+.+|+++++++++++++++|++++.|++++|| +||||++||++|+|||+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s 309 (446)
T 1pp9_A 230 TLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQT 309 (446)
T ss_dssp CCCCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEE
Confidence 21 1111222332 2346788999999999999999999999999996 6899999999999999988
Q ss_pred ccC--CCCCCC
Q 005848 666 DFD--SHSGVL 674 (674)
Q Consensus 666 ~~~--~~~G~f 674 (674)
++. .+.|.|
T Consensus 310 ~~~~~~~~g~~ 320 (446)
T 1pp9_A 310 FNICYADTGLL 320 (446)
T ss_dssp EEEECSSCEEE
T ss_pred ecccCCCCeEE
Confidence 775 344543
No 8
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-34 Score=308.18 Aligned_cols=294 Identities=20% Similarity=0.232 Sum_probs=230.1
Q ss_pred cEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHh
Q 005848 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (674)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d 89 (674)
.+|++|++.|+++..|+|||+|||+|+||++|+..+ +.+.+ +.+|+++||+|+.|+|.|++ +++.++++.+|+++.|
T Consensus 28 l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~-~~~~l-~~~G~~~na~t~~d~t~y~~-~~~~~~l~~~l~ll~d 104 (406)
T 3eoq_A 28 YFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALA-VNRAF-DRMGAQYNAFTSEEATVYYG-AVLPEFAYDLLGLFAK 104 (406)
T ss_dssp EEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHH-HHHHH-HHTTCEEEEEECSSCEEEEE-EECGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHH-HHHHH-HHhCCCccceecCCeEEEEE-EecHHHHHHHHHHHHH
Confidence 367789999999999999999999999999998888 55556 55699999999999999997 5578999999999999
Q ss_pred hhhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005848 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (674)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt 169 (674)
++ +|.|++++ |++| |+++++|++...++|..++.+.+.+.+|++|||+++++|++++|+++|
T Consensus 105 ~~-~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t 166 (406)
T 3eoq_A 105 LL-RPALREED--FQTE---------------KLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALT 166 (406)
T ss_dssp HT-SCCCCHHH--HHHH---------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCC
T ss_pred Hh-cCCCCHHH--HHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCC
Confidence 99 99999999 9987 999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccCCCCcc-hh-H-----HH-HH-HhhhhcccC
Q 005848 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFP-RG-L-----SL-ML-RSMGKWIYD 240 (674)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~~~~~p-~~-~-----~~-~~-~~~~~~~~~ 240 (674)
.+++++||++||+|+||+|+++||+|++++.++++ ..|+.++...........+ .+ . .. -. ...-.|. .
T Consensus 167 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~ 244 (406)
T 3eoq_A 167 REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAE-RLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFP-G 244 (406)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEEEEE-C
T ss_pred HHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEEEec-C
Confidence 99999999999999999999999999999999995 6665443211100000000 00 0 00 00 0000110 0
Q ss_pred CCccccccccchHHHHHHHHHccCCcchHHHHHHHhhc----------cCCCeEEEEEecCcCchhhHHHHHHHHHHHH-
Q 005848 241 MNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL----------NNPHCVTVEMQPDPEKASRDEAAEKEILAKV- 309 (674)
Q Consensus 241 ~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~~~----------~~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~- 309 (674)
.. ... .....+..+...|++..++++|+.++++.+. .....+.+.+.++++..++..+.+.++++.+
T Consensus 245 ~~-~~~-~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~ 322 (406)
T 3eoq_A 245 VA-YQE-EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLG 322 (406)
T ss_dssp CC-TTC-TTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CC-CCC-chHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHH
Confidence 00 000 0123567788888877667788888775322 1223466777888888888889999999998
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 005848 310 KSSMTKEDLAELARATEEL 328 (674)
Q Consensus 310 ~~~~s~eel~~~k~~~~~~ 328 (674)
+.+++++||+++|+++...
T Consensus 323 ~~~~t~~el~~ak~~l~~~ 341 (406)
T 3eoq_A 323 REGVGEEEVERAKTPLATG 341 (406)
T ss_dssp HHCCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 7899999999999977643
No 9
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=1.1e-32 Score=299.13 Aligned_cols=278 Identities=9% Similarity=0.023 Sum_probs=223.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.++++++++.++|++|++.+ +...++++|.++|++.||++++..+|.+.++.+||+++++++.
T Consensus 11 ~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~---- 86 (443)
T 1hr6_B 11 KLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSR---- 86 (443)
T ss_dssp ECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECS----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECC----
Confidence 46899999999999888999999999999876 3456666666666668999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhh
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~--~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (674)
+.+.|+++++.++++.+++++.|++++|.|++. ++++.++.+.+.... ++++.++...+...++++|+
T Consensus 87 ------~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (443)
T 1hr6_B 87 ------ENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVD----KMYDEVVFDHLHEITYKDQP 156 (443)
T ss_dssp ------SEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTTSG
T ss_pred ------CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhh----CChHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999953 255555555555443 35568888888888888998
Q ss_pred HHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccc
Q 005848 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (674)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 600 (674)
|++...| +.+.|+.++ .++|++||+++|+|+|++++|+||++ .+++++.++++|+.||....+...+
T Consensus 157 ~~~~~~g--~~~~i~~~~----------~~~l~~f~~~~y~~~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~ 223 (443)
T 1hr6_B 157 LGRTILG--PIKNIKSIT----------RTDLKDYITKNYKGDRMVLAGAGAVD-HEKLVQYAQKYFGHVPKSESPVPLG 223 (443)
T ss_dssp GGSCSSC--CHHHHHHCC----------HHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCCCSSCCCTT
T ss_pred CCCCCcC--CHHHHhhCC----------HHHHHHHHHhcCcCCCEEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 8664434 456666553 48999999999999999999999998 6899999999999998654321111
Q ss_pred c---cccCCCCcEEE-Ec-CcCeeEEEEecccCCCCCCcchHHHHHHHHhc------------CccchHHHhhc-CCCCC
Q 005848 601 W---KAHLPSANEAI-VI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVS-GGAYG 662 (674)
Q Consensus 601 ~---~~~~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~IRek-G~aYg 662 (674)
. ..+.......+ .. +.+++++++++++++++++|++++.|++.+|| +||||++|||+ |+|||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~ 303 (443)
T 1hr6_B 224 SPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANS 303 (443)
T ss_dssp SCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSE
T ss_pred cccCCCCCCCCCeEEeccCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEE
Confidence 1 11111122222 23 46788999999999999999999999999995 48999999975 99999
Q ss_pred cccccC
Q 005848 663 GFCDFD 668 (674)
Q Consensus 663 ~~~~~~ 668 (674)
+++.+.
T Consensus 304 ~~~~~~ 309 (443)
T 1hr6_B 304 YMSFST 309 (443)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 988765
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=7.4e-33 Score=300.45 Aligned_cols=298 Identities=16% Similarity=0.208 Sum_probs=229.5
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.+..|+||++|||+|+||++||..+ +.+.+.+ +|+++||+|+.|+|.|++ +++.++++.+|+++.++
T Consensus 34 ~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~-l~~~l~~-~g~~~na~t~~d~t~y~~-~~~~~~l~~~l~ll~d~ 110 (445)
T 3ami_A 34 WYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE-FSKRVAA-MGGRDNAFTTRDYTAYYQ-QVPSSRLSDVMGLEADR 110 (445)
T ss_dssp EESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTH-HHHHHHH-TTCEEEEEECSSCEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHH-HHHHHHH-hCCccccccCCCeEEEEE-ECCHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999987 6777754 699999999999999996 45779999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhh-hccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMK-GVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~-~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt 169 (674)
+++|.|++++ |+++ |+++++|++ +..++|..++.+.+.+.+|++|||+++++|++++|+++|
T Consensus 111 ~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it 173 (445)
T 3ami_A 111 MANLVVDDEL--FKKE---------------IQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMT 173 (445)
T ss_dssp HHCBCCCHHH--HHHH---------------HHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCC
T ss_pred hcCCCCCHHH--HHHH---------------HHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCC
Confidence 9999999999 9988 999999999 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC-CCCcc--hhHH-HHH------H-hhhhcc
Q 005848 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-TGSFP--RGLS-LML------R-SMGKWI 238 (674)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~-~~~~p--~~~~-~~~------~-~~~~~~ 238 (674)
.+++++||++||+|+||+|+++||+|++++.++++ ..|+.++....... ....| .+.. ... . ..-.|.
T Consensus 174 ~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 252 (445)
T 3ami_A 174 AQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAE-QTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLALAWH 252 (445)
T ss_dssp HHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHH-HTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCccEEEEEEE
Confidence 99999999999999999999999999999999995 67765543211000 00000 0000 000 0 000111
Q ss_pred cCCC-ccccccccchHHHHHHHHHccCCcchHHHHHHHh-h--------c---cC-CCeEEEEEecCcCc-hhhHHHHHH
Q 005848 239 YDMN-PFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY-I--------L---NN-PHCVTVEMQPDPEK-ASRDEAAEK 303 (674)
Q Consensus 239 ~~~~-~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~~-~--------~---~~-~~~~~i~~~~d~~~-~~~~~~~~~ 303 (674)
.... +.........+..+...|+++.++++++.++++. + . .. ...+.+.+.+.++. .++..+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~ 332 (445)
T 3ami_A 253 VPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLR 332 (445)
T ss_dssp ECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHH
T ss_pred cCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence 0000 0100111235667778888766677888877542 1 0 12 33466777787774 778888899
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHHHH
Q 005848 304 EILAKV-KSSMTKEDLAELARATEELR 329 (674)
Q Consensus 304 ~~l~~~-~~~~s~eel~~~k~~~~~~~ 329 (674)
++|+.+ +.+++++||+++|+.+....
T Consensus 333 ~~l~~l~~~g~t~~el~~ak~~~~~~~ 359 (445)
T 3ami_A 333 AQVRDIAAKGVTEAELSRVKSQMVAGK 359 (445)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999998 78999999999999776533
No 11
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.2e-32 Score=297.99 Aligned_cols=282 Identities=13% Similarity=0.152 Sum_probs=229.2
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHG 443 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~~ 443 (674)
++.||++|++.+.++.+++++.++|++|+..+++..+++++.++|++.||++++..++.+.++.+||+++++++.
T Consensus 18 ~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~----- 92 (434)
T 3gwb_A 18 STAEGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYK----- 92 (434)
T ss_dssp ECTTCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECS-----
T ss_pred EcCCCeEEEEEECCCCCEEEEEEEEecccccCCcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecC-----
Confidence 578999999999999999999999999998764455666655555667999999999999999999999999975
Q ss_pred CCCCeeEEEEEEEEcccc--HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhH
Q 005848 444 KEDPCCCMVVRGKAMAGQ--AEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (674)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~--l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (674)
+.+.+++++++++ ++.+++++.+++++|.|++ ++++..+...+..+... .+++...+...+...++++|++
T Consensus 93 -----~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~~~~~~~e~~~~-~~~p~~~~~~~~~~~~~~~~~~ 165 (434)
T 3gwb_A 93 -----DMAVASLRSLSAVDKREPALKLFAEVVGKPTFPA-DSLARIKNQMLAGFEYQ-KQNPGKLASLELMKRLYGTHPY 165 (434)
T ss_dssp -----SCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSTT
T ss_pred -----CeEEEEEEecCccccHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCCCCC
Confidence 8899999999998 9999999999999999994 76776666666666655 3566788888888888888887
Q ss_pred HHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCcccccc
Q 005848 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (674)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 601 (674)
.+...|. .+.+..+ ..++|++||+++|+|+|++++|+||++ .+++.++++++|+.||.++.+.....
T Consensus 166 ~~~~~G~--~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (434)
T 3gwb_A 166 AHASDGD--AKSIPPI----------TLAQLKAFHAKAYAAGNVVIALVGDLS-RSDAEAIAAQVSAALPKGPALAKIEQ 232 (434)
T ss_dssp SSCTTCC--TTTTTTC----------CHHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCCCCC--HHHHHhC----------CHHHHHHHHHHhcCcCCeEEEEEcCCC-HHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 7655443 2333322 258999999999999999999999998 68899999999999987643211111
Q ss_pred cccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc----CccchHHHhhc-CCCCCcccccCCC
Q 005848 602 KAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS----NVWLWDRVRVS-GGAYGGFCDFDSH 670 (674)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg----~s~L~~~IRek-G~aYg~~~~~~~~ 670 (674)
+....+....+..|.+++++.+++++++++++|++++.|++.||| +||||++|||+ |+|||+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~ 306 (434)
T 3gwb_A 233 PAEPKASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPM 306 (434)
T ss_dssp CCCCCCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCB
T ss_pred CCCCCCceEEEeCCCCceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccC
Confidence 111122334456677888999999999999999999999999997 46999999997 9999999988743
No 12
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=4.3e-32 Score=294.41 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=223.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.+..+.|.+.++|++|+..+ +...++++|.++|++.||++++..+|.+.++.+||.+|++++.
T Consensus 11 ~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~---- 86 (445)
T 3ami_A 11 TLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTR---- 86 (445)
T ss_dssp ECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECS----
T ss_pred ECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCC----
Confidence 46899999999988899999999999999866 4456777777777778999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHH
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (674)
+.+++++++++++++.+|+++.+++++|.|++ +.++..+...+..+.....+++...+...+...++++|||+
T Consensus 87 ------d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~ 159 (445)
T 3ami_A 87 ------DYTAYYQQVPSSRLSDVMGLEADRMANLVVDD-ELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYR 159 (445)
T ss_dssp ------SCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGG
T ss_pred ------CeEEEEEECCHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCC
Confidence 89999999999999999999999999999994 54444444444444423334566778888888888899987
Q ss_pred HHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccccc
Q 005848 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (674)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 602 (674)
+...| +.+.|..++ .++|++||+++|+|+||+++|+||++ .++++++++++|+.||....+......
T Consensus 160 ~~~~G--~~e~l~~it----------~~~l~~f~~~~y~p~n~~l~vvGd~d-~~~~~~~v~~~f~~~~~~~~~~~~~~~ 226 (445)
T 3ami_A 160 VPVIG--WMNDIQNMT----------AQDVRDWYKRWYGPNNATVVVVGDVE-HEAVFRLAEQTYGKLARVEAPARKQQG 226 (445)
T ss_dssp SCTTC--CHHHHHHCC----------HHHHHHHHHHHCSGGGEEEEEEESCC-HHHHHHHHHHTGGGSCCCCCCCCCCCC
T ss_pred CCCCC--CHHHHhhCC----------HHHHHHHHHHhCCccceEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 65444 355666553 58999999999999999999999998 789999999999999865422111111
Q ss_pred ccCCCCcE--EEEcCcCeeEEEEecccCC---CC-CCcchHHHHHHHHhc---CccchHHHhhc-CCCCCcccccC
Q 005848 603 AHLPSANE--AIVIPTQVNYVGKAANIFE---TG-YKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFD 668 (674)
Q Consensus 603 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~-~~d~~al~vl~~iLg---~s~L~~~IRek-G~aYg~~~~~~ 668 (674)
.+...... .+..+.+++++.++++++. ++ ++|++++.|++.||| +|||+++||++ |++|++++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~ 302 (445)
T 3ami_A 227 EPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYD 302 (445)
T ss_dssp CCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECC
T ss_pred CCCCCCceEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeecc
Confidence 11111212 2333566788999999888 77 899999999999998 69999999975 99999998775
No 13
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.9e-32 Score=295.07 Aligned_cols=292 Identities=18% Similarity=0.235 Sum_probs=229.3
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.++.|+|||+|||+|+||++++..+ +.+.+ +.+|+.+||+|+.|+|.|++ ++..++++.+|+++.++
T Consensus 29 ~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~-~~~~l-~~~G~~~na~t~~d~t~~~~-~~~~~~l~~~l~ll~d~ 105 (421)
T 3hdi_A 29 WVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQE-IAEFF-DSIGGQVNAFTSKEYTCYYA-KVLDDHAGQAIDTLSDM 105 (421)
T ss_dssp EESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHH-HHHHH-HTTTSCEEEEECSSCEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHH-HHHHH-HHhCCceeeeeccceEEEEE-EecHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999888 55556 56799999999999999996 45779999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt~ 170 (674)
+++|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|++|||+++.+|++++|+++|.
T Consensus 106 ~~~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~ 168 (421)
T 3hdi_A 106 FFHSTFQKEE--LEKE---------------RKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNE 168 (421)
T ss_dssp HHSBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCH
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCH
Confidence 9999999999 9987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC--CCCcchhHHHH-----H-HhhhhcccCCC
Q 005848 171 EEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN--TGSFPRGLSLM-----L-RSMGKWIYDMN 242 (674)
Q Consensus 171 ~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~--~~~~p~~~~~~-----~-~~~~~~~~~~~ 242 (674)
+++++||++||+|+|++|+++||+| +++.++++ ..|+.++....... ........... . ...-.|. ..
T Consensus 169 ~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~--~~ 244 (421)
T 3hdi_A 169 GMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIK-ETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLGYP--GL 244 (421)
T ss_dssp HHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHH-HHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEEEE--CC
T ss_pred HHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEe--cC
Confidence 9999999999999999999999999 99999995 66665543211000 00000000000 0 0000010 00
Q ss_pred ccccccccchHHHHHHHHHccCCcchHHHHHHH-hhc----------cCCCeEEEEEecCcCchhhHHHHHHHHHHHH-H
Q 005848 243 PFEPLKYEKPLMALKARLAEEGSKAVFSPLIEK-YIL----------NNPHCVTVEMQPDPEKASRDEAAEKEILAKV-K 310 (674)
Q Consensus 243 ~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~-~~~----------~~~~~~~i~~~~d~~~~~~~~~~~~~~l~~~-~ 310 (674)
+. .-.....+..+...|++..++++|+.++++ .+. .....+.+.+.++++..++..+.+.++++.+ +
T Consensus 245 ~~-~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~ 323 (421)
T 3hdi_A 245 PI-GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAE 323 (421)
T ss_dssp CT-TCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHT
T ss_pred CC-CCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 00 011233567777888776667789888765 211 1233567777888888888889999999998 7
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005848 311 SSMTKEDLAELARATEE 327 (674)
Q Consensus 311 ~~~s~eel~~~k~~~~~ 327 (674)
.+++++||+++|+.+..
T Consensus 324 ~~~t~~el~~ak~~l~~ 340 (421)
T 3hdi_A 324 KGLTEKELENGKEQLKG 340 (421)
T ss_dssp TCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999997654
No 14
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.97 E-value=1.9e-31 Score=291.67 Aligned_cols=281 Identities=11% Similarity=0.036 Sum_probs=221.7
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.++ +++++.++|++|++.+ +...++++|.++|++.||++++..++.+.++.+||.+|++++.
T Consensus 10 ~L~NGl~v~~~~~~~-~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~---- 84 (475)
T 1hr6_A 10 SLANGLKVATSNTPG-HFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSR---- 84 (475)
T ss_dssp ECTTSCEEEEESCCC-SSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECS----
T ss_pred ECCCCCEEEEEeCCC-CEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEcc----
Confidence 578999999987665 8999999999999876 4556777777667778999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhh
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~--~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (674)
+.++|++++++++++.+|+++.|++.+|.|++. ++++.++.+.+.... +++..++...+...++++|+
T Consensus 85 ------d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~----~~p~~~~~~~~~~~~~~~~~ 154 (475)
T 1hr6_A 85 ------ENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVW----MKPELVLPELLHTAAYSGET 154 (475)
T ss_dssp ------SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTTSG
T ss_pred ------CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999853 255555544444432 45568888888888898888
Q ss_pred HHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccc
Q 005848 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (674)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 600 (674)
|++...|. .+.|+.++ .++|++||+++|+|+|++++|+| ++ .+++.+.++++|+.|+....+.. .
T Consensus 155 ~~~~~~G~--~~~l~~it----------~~~l~~f~~~~y~p~n~~l~v~G-~d-~~~~~~~i~~~f~~~~~~~~~~~-~ 219 (475)
T 1hr6_A 155 LGSPLICP--RGLIPSIS----------KYYLLDYRNKFYTPENTVAAFVG-VP-HEKALELTGKYLGDWQSTHPPIT-K 219 (475)
T ss_dssp GGSCSSCC--GGGGGGCC----------HHHHHHHHHHHCCGGGEEEEEES-SC-HHHHHHHHHHHHTTCCCCCCCCC-C
T ss_pred CCCCCcCC--HHHHhhcC----------HHHHHHHHHHhCCcccEEEEEeC-CC-HHHHHHHHHHHhccCCCCCCCCC-C
Confidence 87765443 34444332 58999999999999999999999 97 68999999999999986543211 1
Q ss_pred ccccCCCCcEEEE------cCcCeeEEEEecccCCCCCCcchHHHHHHHHhcC--------------ccchHHHhhc-CC
Q 005848 601 WKAHLPSANEAIV------IPTQVNYVGKAANIFETGYKLNGSAYVISKHISN--------------VWLWDRVRVS-GG 659 (674)
Q Consensus 601 ~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~--------------s~L~~~IRek-G~ 659 (674)
.+.........+. .+.+++++++++++++++++|++++.|+++|||+ ||||++||++ |+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl 299 (475)
T 1hr6_A 220 KVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYF 299 (475)
T ss_dssp CCCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSS
T ss_pred CCCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCC
Confidence 1111111111222 3456788999999888999999999999999972 8999999996 99
Q ss_pred CCCcccccCC--CCCCC
Q 005848 660 AYGGFCDFDS--HSGVL 674 (674)
Q Consensus 660 aYg~~~~~~~--~~G~f 674 (674)
+|++++++.. +.|+|
T Consensus 300 ~y~v~s~~~~~~~~g~~ 316 (475)
T 1hr6_A 300 VENCVAFNHSYSDSGIF 316 (475)
T ss_dssp EEEEEEEEEECSSCEEE
T ss_pred eeEEEEeccccCCCceE
Confidence 9999887753 44543
No 15
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.97 E-value=3.6e-31 Score=287.23 Aligned_cols=294 Identities=12% Similarity=0.116 Sum_probs=225.5
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.++.|+|||+|||+|+||++++..+ +.+.+.. +|+++||+|+.|+|.|++ ++..++++.+|+++.|+
T Consensus 40 ~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~-~~~~l~~-~G~~~na~t~~d~t~~~~-~~~~~~l~~~l~ll~d~ 116 (446)
T 1pp9_A 40 WIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNA-LEKEVES-MGAHLNAYSTREHTAYYI-KALSKDLPKAVELLADI 116 (446)
T ss_dssp EESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTH-HHHHHHH-TTCEEEEEECSSCEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHH-HHHHHHH-cCCEEEEEEcCCeEEEEE-EecHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988 6666644 699999999999999996 44678999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt~ 170 (674)
+++|.|++++ |+++ |++|++|++...++|..++.+.+.+.+|++|||+++++|++++|++++.
T Consensus 117 ~~~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~ 179 (446)
T 1pp9_A 117 VQNCSLEDSQ--IEKE---------------RDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSR 179 (446)
T ss_dssp HHHBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCH
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCH
Confidence 9999999999 9887 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC-----CCCcchhHHHH-H-----H-hhhhcc
Q 005848 171 EEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-----TGSFPRGLSLM-L-----R-SMGKWI 238 (674)
Q Consensus 171 ~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~-----~~~~p~~~~~~-~-----~-~~~~~~ 238 (674)
++|++||++||+|+|++|+++||+|++++.++++ ..|+.++....... ....+.+.... . . ..-.|.
T Consensus 180 ~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 258 (446)
T 1pp9_A 180 ADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQ-KHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVE 258 (446)
T ss_dssp HHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSEEEEEEEE
T ss_pred HHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHH-HHhccCCCCCCCCccccCCCCCCCCceEEEecCCccceEEEEEEe
Confidence 9999999999999999999999999999999995 55554432211000 00000000000 0 0 000000
Q ss_pred cCCCccccccccchHHHHHHHHHc---------cCCcchHHHHHHHhhc----------cCCCeEEEEEecCcCchhhHH
Q 005848 239 YDMNPFEPLKYEKPLMALKARLAE---------EGSKAVFSPLIEKYIL----------NNPHCVTVEMQPDPEKASRDE 299 (674)
Q Consensus 239 ~~~~~~~~l~~~~~l~~l~~~l~~---------~~s~~~~~~l~~~~~~----------~~~~~~~i~~~~d~~~~~~~~ 299 (674)
.. +. .-.....+..+...|++ ..++++++.++++.+. .....+.+.+.++++..++..
T Consensus 259 -~~-~~-~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 335 (446)
T 1pp9_A 259 -GP-GW-AHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMM 335 (446)
T ss_dssp -EC-CT-TCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHH
T ss_pred -cC-CC-CCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHH
Confidence 00 00 00112356667777763 3456688888765322 122345677778888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 005848 300 AAEKEILAKVKSSMTKEDLAELARATEEL 328 (674)
Q Consensus 300 ~~~~~~l~~~~~~~s~eel~~~k~~~~~~ 328 (674)
+.+.++++.+..+++++||+++|..+...
T Consensus 336 ~~i~~~l~~l~~~~t~~el~~ak~~~~~~ 364 (446)
T 1pp9_A 336 FVLQGQWMRLCTSATESEVLRGKNLLRNA 364 (446)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 89999999885579999999999977643
No 16
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.97 E-value=5.2e-31 Score=284.13 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=218.0
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCC----CCCHHHHHHHHhhcccceEEeeee
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTK----DLSFVQLDQLIGRKTGGISVYPFT 438 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~----~~~~~el~~~i~~~~g~l~~~~~~ 438 (674)
++.||++|++.+.++.+.+++.++|++|+..+ ++..+++++.++|++.||+ +++..++.+.++.+||+++++++.
T Consensus 8 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~ 87 (424)
T 3amj_B 8 TAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEA 87 (424)
T ss_dssp ECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECS
T ss_pred ECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCC
Confidence 46799999999999999999999999999865 3344555554445556999 999999999999999999999865
Q ss_pred ccCCCCCCCeeEEEEEEEEccccH--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcC
Q 005848 439 SSIHGKEDPCCCMVVRGKAMAGQA--EDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLN 516 (674)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 516 (674)
+.+.|+++++++++ +.+|+++.+++.+|.|++ ++++..+...+..+.... +++...+...+...++
T Consensus 88 ----------~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~e~~~v~~e~~~~~-~~p~~~~~~~~~~~~~ 155 (424)
T 3amj_B 88 ----------DRASFSLRVLSSPAERNSALTILRDILAHPTFPA-PVLERERARAIAGLREAQ-TQPGSILGRRFTELAY 155 (424)
T ss_dssp ----------SCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHH
T ss_pred ----------CeEEEEEEEeccccChhHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHhcC
Confidence 78999999999998 999999999999999995 444444444444443332 4566888888888888
Q ss_pred hhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCc
Q 005848 517 TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPV 596 (674)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~ 596 (674)
++|++.+.. +.+.+..++ .++|++||+++|+|+|++++|+||++ .+++++.++++|+.||.+..+
T Consensus 156 ~~~p~~~~~----~~~~l~~it----------~~~l~~f~~~~y~~~~~~l~v~Gd~~-~~~~~~~~~~~f~~~~~~~~~ 220 (424)
T 3amj_B 156 GKHPYGHVS----SVATLQKIS----------RDQLVSFHRTHYVARTAVVTLVGDIT-RAEAETIAQQLTADLPAGATL 220 (424)
T ss_dssp TTSGGGCCC----CHHHHHHCC----------HHHHHHHHHHHSCTTSCEEEEEESCC-HHHHHHHHHHTTTTSCCCCCC
T ss_pred CCCCCCCCC----CHHHHHhCC----------HHHHHHHHHHhcCCCceEEEEEeCCC-HHHHHHHHHHHHhcCCCCCCC
Confidence 888876543 344444432 58999999999999999999999998 688999999999999865432
Q ss_pred ccccccccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc----CccchHHHhhc-CCCCCcccccCC
Q 005848 597 ERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS----NVWLWDRVRVS-GGAYGGFCDFDS 669 (674)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg----~s~L~~~IRek-G~aYg~~~~~~~ 669 (674)
.+.+.+....+....+..+.+++++.++++++++++++++++.|++.||| +||||++||++ |++||+++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~ 298 (424)
T 3amj_B 221 PPLPDPAMPRATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSP 298 (424)
T ss_dssp CCCCCCCCCCCEEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECC
T ss_pred CCCCCCCCCCCceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeecc
Confidence 11111111111122334466788999999998899999999999999997 36999999995 999999988764
No 17
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.97 E-value=1.9e-30 Score=281.37 Aligned_cols=293 Identities=14% Similarity=0.142 Sum_probs=223.9
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.+..|+||++|||+|+||++++..+ +.+.+.. +|+++||+|+.|+|.|++ ++..++++.+|+++.++
T Consensus 34 ~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~-l~~~l~~-~g~~~na~t~~~~t~~~~-~~~~~~l~~~l~ll~d~ 110 (443)
T 1hr6_B 34 FVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQG-IELEIEN-IGSHLNAYTSRENTVYYA-KSLQEDIPKAVDILSDI 110 (443)
T ss_dssp EEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHH-HHHHHHH-TTCEEEEEECSSEEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHH-HHHHHHH-cCCeEEEEECCCeEEEEE-EecHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999888 6677755 599999999999999996 45678999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt~ 170 (674)
+++|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|++|||+++++|++++|++++.
T Consensus 111 ~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~ 173 (443)
T 1hr6_B 111 LTKSVLDNSA--IERE---------------RDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITR 173 (443)
T ss_dssp HHSBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCH
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCH
Confidence 9999999999 9887 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC-------CCCcchhHHHH-H-----Hhh-hh
Q 005848 171 EEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-------TGSFPRGLSLM-L-----RSM-GK 236 (674)
Q Consensus 171 ~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~-------~~~~p~~~~~~-~-----~~~-~~ 236 (674)
++|++||++||+|+|++|+++||+|++++.++++ ..|+.++....... ....+.+.... . ..+ ..
T Consensus 174 ~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 252 (443)
T 1hr6_B 174 TDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQ-KYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIA 252 (443)
T ss_dssp HHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEEEEEE
T ss_pred HHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHH-HHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccCCccceEEEEE
Confidence 9999999999999999999999999999999995 65655432211000 00000000000 0 000 00
Q ss_pred cccCCCccccccccchHHHHHHHHHc---------cCCcchHHHHHHH-hhc----------cCCCeEEEEEecC--cCc
Q 005848 237 WIYDMNPFEPLKYEKPLMALKARLAE---------EGSKAVFSPLIEK-YIL----------NNPHCVTVEMQPD--PEK 294 (674)
Q Consensus 237 ~~~~~~~~~~l~~~~~l~~l~~~l~~---------~~s~~~~~~l~~~-~~~----------~~~~~~~i~~~~d--~~~ 294 (674)
|. . .+. .-.....+..+...|++ ..++++++.++++ .+. .....+.+.+.++ ++.
T Consensus 253 ~~-~-~~~-~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~ 329 (443)
T 1hr6_B 253 LE-G-VSW-SAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHN 329 (443)
T ss_dssp EE-C-CCT-TCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCC
T ss_pred Ee-c-CCC-CCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhH
Confidence 00 0 000 01112346667777754 2345678877634 111 1223456677787 888
Q ss_pred hhhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 005848 295 ASRDEAAEKEILAKV-KSSMTKEDLAELARATEE 327 (674)
Q Consensus 295 ~~~~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~ 327 (674)
.++..+.+.++++.+ +.+++++||+++|+.+..
T Consensus 330 ~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~ 363 (443)
T 1hr6_B 330 VRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKA 363 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 888889999999988 566999999999996654
No 18
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.97 E-value=4.3e-30 Score=278.20 Aligned_cols=274 Identities=9% Similarity=-0.017 Sum_probs=214.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+. .++++++.++|++|+..+ +...+++++.++|++.||++++..++.+.++.+||+++++++.
T Consensus 28 ~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~---- 102 (439)
T 1pp9_B 28 RLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTR---- 102 (439)
T ss_dssp ECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECS----
T ss_pred ECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecc----
Confidence 5689999999988 789999999999999866 3445666665556668999999999999999999999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHH
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (674)
+.+.|++++++++++.+++++.+++.+|.|++ ++++..+...+..+... .+.++.++...+...+++ |+++
T Consensus 103 ------~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~-~~~~ 173 (439)
T 1pp9_B 103 ------ENMAYTVECLRDDVDILMEFLLNVTTAPEFRR-WEVAALQPQLRIDKAVA-LQNPQAHVIENLHAAAYR-NALA 173 (439)
T ss_dssp ------SCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHBS-SGGG
T ss_pred ------eEEEEEEEeehhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHhc-CCCC
Confidence 89999999999999999999999999999995 43443333333333332 245667888888887887 8876
Q ss_pred HHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCccccccc
Q 005848 523 EQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWK 602 (674)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 602 (674)
+...|. .+.+..+ ..++|++||+++|+|+|++++|+|| + .+++.+.++++++ |+..... .. .+
T Consensus 174 ~~~~g~--~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~-~-~~~~~~~~~~~~~-~~~~~~~-~~-~~ 236 (439)
T 1pp9_B 174 NSLYCP--DYRIGKV----------TPVELHDYVQNHFTSARMALIGLGV-S-HPVLKQVAEQFLN-IRGGLGL-SG-AK 236 (439)
T ss_dssp SCSSCC--GGGTTTC----------CHHHHHHHHHHHCSGGGEEEEEESS-C-HHHHHHHHHHHCC-CCCCC-C-CC-CC
T ss_pred CCccCC--HHHHhhc----------CHHHHHHHHHHhCCCCceEEEEeCC-C-HHHHHHHHHHHhC-CCCCCCC-CC-CC
Confidence 544343 2333322 2589999999999999999999999 7 7889999999998 9764432 11 11
Q ss_pred ccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc-----------CccchHHHhhc-CCCCCcccccC
Q 005848 603 AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS-----------NVWLWDRVRVS-GGAYGGFCDFD 668 (674)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg-----------~s~L~~~IRek-G~aYg~~~~~~ 668 (674)
.........+..+.+++++.+++++++++++|++++.|+++||| +||||++|||+ |+|||+++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~ 314 (439)
T 1pp9_B 237 AKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNA 314 (439)
T ss_dssp CCBCCEEEEEECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEE
T ss_pred CCCcCCeEEecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeec
Confidence 11122223355577788999999999999999999999999997 38999999986 99999988765
No 19
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.97 E-value=8.4e-30 Score=278.60 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=222.6
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|++++.|+|||+|||+|+||++++..+ +.+.+ +..|+.+||+|+.|+|.|++ ++..++++.+|+++.|+
T Consensus 32 ~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~-~~~~l-e~~G~~~na~t~~d~t~y~~-~~~~~~l~~~l~ll~d~ 108 (475)
T 1hr6_A 32 YIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA-MAETL-ELLGGNYQCTSSRENLMYQA-SVFNQDVGKMLQLMSET 108 (475)
T ss_dssp EESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHH-HHHHH-HHTTSCEEEEECSSCEEEEE-EECGGGHHHHHHHHHHH
T ss_pred EEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHH-HHHHH-HHcCCEEEEEEccCeEEEEE-EecHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999888 55555 45699999999999999996 45778999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt~ 170 (674)
+++|.|++++ |+++ |++|++|++...++|..++.+.+.+.+|++|||+++.+|+++.|+++|.
T Consensus 109 ~~~p~f~~~~--~~~e---------------r~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~ 171 (475)
T 1hr6_A 109 VRFPKITEQE--LQEQ---------------KLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISK 171 (475)
T ss_dssp HHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCH
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCH
Confidence 9999999999 9887 9999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccc-c-CCCCcchhH-HHH------H----H-hhhh
Q 005848 171 EEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE-N-NTGSFPRGL-SLM------L----R-SMGK 236 (674)
Q Consensus 171 ~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~-~-~~~~~p~~~-~~~------~----~-~~~~ 236 (674)
++|++||++||+|+|++|+++| +|++++.++++ ..|+.++..... . ....++.+. ... . . ..-.
T Consensus 172 ~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 249 (475)
T 1hr6_A 172 YYLLDYRNKFYTPENTVAAFVG-VPHEKALELTG-KYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHIQIG 249 (475)
T ss_dssp HHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHH-HHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCCEEEEEE
T ss_pred HHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHH-HHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccceEEEEE
Confidence 9999999999999999999999 99999999995 655544321110 0 000010000 000 0 0 0000
Q ss_pred cccCCCccccccccchHHHHHHHHHcc-----------CCcchHHHHHHH-hhc----------cCCCeEEEEEecCcCc
Q 005848 237 WIYDMNPFEPLKYEKPLMALKARLAEE-----------GSKAVFSPLIEK-YIL----------NNPHCVTVEMQPDPEK 294 (674)
Q Consensus 237 ~~~~~~~~~~l~~~~~l~~l~~~l~~~-----------~s~~~~~~l~~~-~~~----------~~~~~~~i~~~~d~~~ 294 (674)
|. ..+. .-.....+..|...|++. .++++|..++++ .+. .....+.+.+.++++.
T Consensus 250 ~~--~~~~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~ 326 (475)
T 1hr6_A 250 FE--GLPI-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQA 326 (475)
T ss_dssp EE--CCCT-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred Ee--cCCC-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHH
Confidence 00 0000 001123456677777643 225688777664 211 1223456777788888
Q ss_pred hhhHHHHHHHHHHHH-H---hcCCHHHHHHHHHHHHHH
Q 005848 295 ASRDEAAEKEILAKV-K---SSMTKEDLAELARATEEL 328 (674)
Q Consensus 295 ~~~~~~~~~~~l~~~-~---~~~s~eel~~~k~~~~~~ 328 (674)
.++..+.+.++++.+ + .+++++||+++|+++...
T Consensus 327 ~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~ 364 (475)
T 1hr6_A 327 APQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSS 364 (475)
T ss_dssp HHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 888888888888887 4 579999999999977643
No 20
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.97 E-value=2.3e-29 Score=271.19 Aligned_cols=286 Identities=11% Similarity=0.056 Sum_probs=218.6
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCC-CHHHHHHHHhhc-ccceEEeeeeccC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDL-SFVQLDQLIGRK-TGGISVYPFTSSI 441 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~-~~~el~~~i~~~-~g~l~~~~~~~~~ 441 (674)
++.||++|++.+.++.+++++.++|++|+..+. .+.++++.++|+ .||+++ +..++.+.++.+ ||+++++++.
T Consensus 7 ~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~-~g~a~ll~~~l~-~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~--- 81 (425)
T 3d3y_A 7 QLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET-ITKRTLLSSLME-TNSLNYPNQVKLSERLAELYGASFGIGVSK--- 81 (425)
T ss_dssp EEETTEEEEEEECSSCSEEEEEEEEEEECCTTT-HHHHHHHHHHHH-HCCSSSCSHHHHHHHHHHTTSCEEEEEEEE---
T ss_pred eccCCcEEEEEecCccceEEEEEEEeCCCCccc-hhHHHHHHHHHH-hhhhcCCCHHHHHHHHHHHhCceEeeeeee---
Confidence 467999999999999999999999999986643 455666666665 799999 999999999998 9999999864
Q ss_pred CCCCCCeeEEEEEEEEccc-------cHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHHhhhhhhccCcHHHHHH
Q 005848 442 HGKEDPCCCMVVRGKAMAG-------QAEDLFNLFNCVLQEVQ-----LTDQQRFKQFVSQSKARMENRLRGSGHGIAAA 509 (674)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~-------~l~~~l~ll~dil~~p~-----f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ 509 (674)
+.+...+.++++++++ +++.+++++.+++++|. |++ ++++..+...+..+.... ++++.++..
T Consensus 82 ---~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~-~~~~~~k~~v~~e~~~~~-~~p~~~~~~ 156 (425)
T 3d3y_A 82 ---KGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEA-ETFQREKENLKAYLESIV-EDKQTYASL 156 (425)
T ss_dssp ---ETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECH-HHHHHHHHHHHHHHHHHH-HSHHHHHHH
T ss_pred ---cCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCH-HHHHHHHHHHHHHHHHHh-hCHHHHHHH
Confidence 1222347999999997 69999999999999999 995 544444444444443322 356688888
Q ss_pred HHHhhcC-hhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHh
Q 005848 510 RMDAKLN-TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLD 588 (674)
Q Consensus 510 ~~~~~~~-~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~ 588 (674)
.+...++ ++|+++... .++.+.|..++ .++|++||+++|+|+|++++|+||++ .+++++.+ ++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~--~g~~~~l~~~t----------~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~-~~~~ 222 (425)
T 3d3y_A 157 ALQSVYFNQSEDQKIPS--FGTVAALAEET----------AASLAAYYQKMLAEDQVDIFVLGDVN-EAELVPLF-KQLP 222 (425)
T ss_dssp HHHHHHTTTCTTTTSCT--TCCHHHHHHCC----------HHHHHHHHHHHHHHSEEEEEEEESCC-HHHHHHHH-HTSC
T ss_pred HHHHHhccCCCCccCCC--CCCHHHHHhCC----------HHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHH-HhCC
Confidence 8888888 778775433 33455665542 58999999999999999999999998 68899999 9999
Q ss_pred cCCCCCCcccc-cccccCCC-CcEEE-EcCcCeeEEEEecccC-CCCCCcchHHHHHHHHhc---CccchHHHhhc-CCC
Q 005848 589 MLPTNSPVERV-KWKAHLPS-ANEAI-VIPTQVNYVGKAANIF-ETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGA 660 (674)
Q Consensus 589 ~l~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~v~~~~~~~-~~~~~d~~al~vl~~iLg---~s~L~~~IRek-G~a 660 (674)
||........ ....+... ....+ ..+.+++++.++++++ +++++|++++.|+++||| +||||++|||+ |+|
T Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~gla 301 (425)
T 3d3y_A 223 -FTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLA 301 (425)
T ss_dssp -CCCCCCCCCCSCCCCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCC
T ss_pred -CCccccccccccccccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeE
Confidence 9864432111 11111111 11222 2356788999999975 789999999999999998 89999999996 999
Q ss_pred CCcccccCCCCCCC
Q 005848 661 YGGFCDFDSHSGVL 674 (674)
Q Consensus 661 Yg~~~~~~~~~G~f 674 (674)
||+++++....|+|
T Consensus 302 Y~v~~~~~~~~g~~ 315 (425)
T 3d3y_A 302 YYASSSIDTFRGFM 315 (425)
T ss_dssp SEEEEEEETTTTEE
T ss_pred EEEeccccccCceE
Confidence 99999887666654
No 21
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.96 E-value=1.4e-28 Score=265.82 Aligned_cols=293 Identities=15% Similarity=0.162 Sum_probs=223.9
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCC-HhhHHHHHHHHHh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTN-TKDFYNLVDVYFD 89 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~-~~~~~~~l~l~~d 89 (674)
+|++|++.| ++..|++|+++||+|+||++++..+ +.+.+.. +|+++|++|+.++|.|.+.+.. .++++.+|+++.+
T Consensus 41 ~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~-l~~~l~~-~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~ 117 (434)
T 3gwb_A 41 IFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGA-IAQGFEG-LGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAE 117 (434)
T ss_dssp EESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHH-HHHHHHT-TTCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHH
T ss_pred EEecccccC-CcchhHHHHHHHHHhcCcccCCHHH-HHHHHHH-hCCEEEeeecCCeEEEEEEecCccccHHHHHHHHHH
Confidence 566788888 8899999999999999999998777 6666744 5999999999999999875433 2459999999999
Q ss_pred hhhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005848 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (674)
Q Consensus 90 ~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt 169 (674)
++++|.|++++ |+++ |+++++|+++..++|..++.+.+.+.+|++|||+++.+|++++|+++|
T Consensus 118 ~~~~p~f~~~~--~~~~---------------~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it 180 (434)
T 3gwb_A 118 VVGKPTFPADS--LARI---------------KNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPIT 180 (434)
T ss_dssp HHHSCCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCC
Confidence 99999999999 9887 999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC--CCCcchh-H-----HHHHH-hhhhcccC
Q 005848 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN--TGSFPRG-L-----SLMLR-SMGKWIYD 240 (674)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~--~~~~p~~-~-----~~~~~-~~~~~~~~ 240 (674)
.+++++||++||+|+|++++++||+|++++.++++ ..++.++....... ....+.+ . +.-.. ....|.
T Consensus 181 ~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 257 (434)
T 3gwb_A 181 LAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAA-QVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQTSLMLAQL-- 257 (434)
T ss_dssp HHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHH-HHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEEEEEEEEE--
T ss_pred HHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCceeEEecCc--
Confidence 99999999999999999999999999999999995 55544432211000 0000000 0 00000 000010
Q ss_pred CCccccccccchHHHHHHHHHcc-CCcchHHHHHHHh-hc----------cCCCeEEEEEecCcCchhhHHHHHHHHHHH
Q 005848 241 MNPFEPLKYEKPLMALKARLAEE-GSKAVFSPLIEKY-IL----------NNPHCVTVEMQPDPEKASRDEAAEKEILAK 308 (674)
Q Consensus 241 ~~~~~~l~~~~~l~~l~~~l~~~-~s~~~~~~l~~~~-~~----------~~~~~~~i~~~~d~~~~~~~~~~~~~~l~~ 308 (674)
..+ ..-.....+..+...|++. .++++|+.++++. +. .....+.+.+.++++..++..+.+.++++.
T Consensus 258 ~~~-~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~ 336 (434)
T 3gwb_A 258 GID-RDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAE 336 (434)
T ss_dssp CCB-TTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCC-CCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHH
Confidence 000 0001123567777778765 5667888887761 11 122456677788888888888899999999
Q ss_pred H-HhcCCHHHHHHHHHHHHH
Q 005848 309 V-KSSMTKEDLAELARATEE 327 (674)
Q Consensus 309 ~-~~~~s~eel~~~k~~~~~ 327 (674)
+ +.+++++|++++|+.+..
T Consensus 337 l~~~~~~~~el~~ak~~~~~ 356 (434)
T 3gwb_A 337 YLKNGPTQKELDDAKRELAG 356 (434)
T ss_dssp HHHHCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHh
Confidence 8 789999999999996553
No 22
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.96 E-value=1e-28 Score=266.76 Aligned_cols=269 Identities=12% Similarity=-0.001 Sum_probs=206.5
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~ 442 (674)
++.||++|++.+.+..+.+++.++|++|+..+ ++..+++++.++|++.||++ ..++..||+++++++.
T Consensus 5 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~---- 73 (431)
T 3cx5_A 5 QLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISR---- 73 (431)
T ss_dssp EEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECS----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecC----
Confidence 46799999999999899999999999999876 34455555554455568754 2478899999999975
Q ss_pred CCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCC---CCch--HHHHHHHHHHHHhhhhhhccCc-HHHHHHHHHhhcC
Q 005848 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQ---LTDQ--QRFKQFVSQSKARMENRLRGSG-HGIAAARMDAKLN 516 (674)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~---f~~~--~~~~~i~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 516 (674)
+.+.|++++++++++.+++++.+++.+|. |++. ++++.++.+.+.... +++ ..++...+...++
T Consensus 74 ------~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~----~~p~~~~~~~~~~~~~~ 143 (431)
T 3cx5_A 74 ------DFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFE----DNDHPNRVLEHLHSTAF 143 (431)
T ss_dssp ------SCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHT
T ss_pred ------CeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhh----cCchhHHHHHHHHHHhc
Confidence 88999999999999999999999999999 9853 244444444444333 345 5788888888888
Q ss_pred hhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCc
Q 005848 517 TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPV 596 (674)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~ 596 (674)
++|+++.... ++.+.|..++ .++|++||+++|+|+|++++|+||++ .+++++.++++++.||.+..+
T Consensus 144 ~~~~~~~~~~--g~~~~l~~~t----------~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (431)
T 3cx5_A 144 QNTPLSLPTR--GTLESLENLV----------VADLESFANNHFLNSNAVVVGTGNIK-HEDLVNSIESKNLSLQTGTKP 210 (431)
T ss_dssp TTSGGGSCTT--CCHHHHHTCC----------HHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHTTSCCCSSCSCCC
T ss_pred CCCCCCCCCC--CCHHHHhhCC----------HHHHHHHHHhcCCCCcEEEEEEcCCC-HHHHHHHHHHHhCCCCCCCCC
Confidence 8888765443 3455555442 58999999999999999999999998 678999999977788754432
Q ss_pred ccccccccCCCCcEEEE-c-CcCeeEEEEecccCCCCCCcchHHHHHHHHhcC------------ccchHHHhhcCCCCC
Q 005848 597 ERVKWKAHLPSANEAIV-I-PTQVNYVGKAANIFETGYKLNGSAYVISKHISN------------VWLWDRVRVSGGAYG 662 (674)
Q Consensus 597 ~~~~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~------------s~L~~~IRekG~aYg 662 (674)
. ...+ .......... . +.+++++.+++++++++++|++++.|+++|||+ ||||++|||+|++|+
T Consensus 211 ~-~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~ 288 (431)
T 3cx5_A 211 V-LKKK-AAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDN 288 (431)
T ss_dssp C-CCCC-CCCCCEEEEEECTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSE
T ss_pred C-CCCC-CcccCceEEEcCCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceee
Confidence 1 1111 1112222322 2 356889999999999999999999999999983 899999999999999
Q ss_pred cccccC
Q 005848 663 GFCDFD 668 (674)
Q Consensus 663 ~~~~~~ 668 (674)
+++++.
T Consensus 289 v~~~~~ 294 (431)
T 3cx5_A 289 FNHFSL 294 (431)
T ss_dssp EEEEEE
T ss_pred EeEeec
Confidence 988765
No 23
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.96 E-value=6.7e-29 Score=267.59 Aligned_cols=293 Identities=15% Similarity=0.170 Sum_probs=221.6
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCC----CCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH--HHHH
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSR----KYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF--YNLV 84 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~----~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~--~~~l 84 (674)
+|++|+..|+.+..|+||++|||+|+||+ +++..+ +.+.+.+ +|+++|++|+.|+|.|++.+ .++++ +.+|
T Consensus 31 ~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~-~~~~l~~-~G~~~~a~t~~~~t~~~~~~-~~~~~~l~~~l 107 (424)
T 3amj_B 31 DFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENA-IADRLAD-IGARLGGGAEADRASFSLRV-LSSPAERNSAL 107 (424)
T ss_dssp EESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHH-HHHHHHH-TTCEEEEEECSSCEEEEEEE-ESSHHHHHHHH
T ss_pred EEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHH-HHHHHHH-hCCEEEeecCCCeEEEEEEE-eccccChhHHH
Confidence 46678999999999999999999999999 999887 6677755 59999999999999999744 44666 9999
Q ss_pred HHHHhhhhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCc
Q 005848 85 DVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKV 164 (674)
Q Consensus 85 ~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 164 (674)
+++.+++++|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|++|||+++. ++++
T Consensus 108 ~ll~~~~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~ 168 (424)
T 3amj_B 108 TILRDILAHPTFPAPV--LERE---------------RARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVAT 168 (424)
T ss_dssp HHHHHHHHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHH
T ss_pred HHHHHHHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHH
Confidence 9999999999999999 9987 9999999998889999999999999999999999887 8899
Q ss_pred cCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC--CCCcchhHHHHHH--hhh---hc
Q 005848 165 IPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN--TGSFPRGLSLMLR--SMG---KW 237 (674)
Q Consensus 165 i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~--~~~~p~~~~~~~~--~~~---~~ 237 (674)
|+++|.+++++||++||+|+|++++++||+|++++.++++ ..|+.++....... ....+.+...... ... .+
T Consensus 169 l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (424)
T 3amj_B 169 LQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQ-QLTADLPAGATLPPLPDPAMPRATVERIANPATQAHIAI 247 (424)
T ss_dssp HHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHH-HTTTTSCCCCCCCCCCCCCCCCCEEEEEECSSSEEEEEE
T ss_pred HHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCceEEeeCCCCccEEEe
Confidence 9999999999999999999999999999999999999995 66665543211100 0000000000000 000 00
Q ss_pred ccCCCccccccccchHHHHHHHHHcc-CCcchHHHHHHHh-hc----------cCCCeEEEEEecCcCchhhHHHHHHHH
Q 005848 238 IYDMNPFEPLKYEKPLMALKARLAEE-GSKAVFSPLIEKY-IL----------NNPHCVTVEMQPDPEKASRDEAAEKEI 305 (674)
Q Consensus 238 ~~~~~~~~~l~~~~~l~~l~~~l~~~-~s~~~~~~l~~~~-~~----------~~~~~~~i~~~~d~~~~~~~~~~~~~~ 305 (674)
.+.. +.........+..+...|++. .++++|+.++++. +. .....+.+.+.++++..++..+.+.++
T Consensus 248 ~~~~-~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~ 326 (424)
T 3amj_B 248 GMPT-LKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDT 326 (424)
T ss_dssp EEEE-EBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHH
T ss_pred eccC-CCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHH
Confidence 0000 000011223466677777654 4556888887642 11 122345677778888888888899999
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHH
Q 005848 306 LAKV-KSSMTKEDLAELARATEE 327 (674)
Q Consensus 306 l~~~-~~~~s~eel~~~k~~~~~ 327 (674)
++.+ +.+++++||+++|+.+..
T Consensus 327 l~~l~~~~~t~~el~~ak~~~~~ 349 (424)
T 3amj_B 327 LDAFLREGPTDAELQAAKDNLIN 349 (424)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Confidence 9988 679999999999986653
No 24
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.95 E-value=1.6e-28 Score=268.70 Aligned_cols=275 Identities=9% Similarity=-0.001 Sum_probs=200.1
Q ss_pred cccCCceEEEeecC--CCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHH----HhhcccceEEee
Q 005848 364 GDINGVKVLQHDLF--TNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQL----IGRKTGGISVYP 436 (674)
Q Consensus 364 ~~~nG~~v~~~~~~--~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~~el~~~----i~~~~g~l~~~~ 436 (674)
++.||++|++.+.+ ..++|++.++|++|+..+ +...++++|.++|+++||++++..+|.+. ++.+||.+|+++
T Consensus 30 ~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t 109 (492)
T 3go9_A 30 KLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAIT 109 (492)
T ss_dssp ECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEE
T ss_pred ECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEe
Confidence 57899999987654 357899999999999977 45677777666666679999999999975 556899999999
Q ss_pred eeccCCCCCCCeeEEEEEEEEcc---ccHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHh
Q 005848 437 FTSSIHGKEDPCCCMVVRGKAMA---GQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDA 513 (674)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~l~ll~dil~~p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~ 513 (674)
+. ++++|++++++ ++++++|++++|++.+|.|++ +.+.+.+...+..+.....++. ..+.. .
T Consensus 110 ~~----------d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~er~~~~~~~~~~~~~~~-~~~~~---~ 174 (492)
T 3go9_A 110 SY----------DFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSE-QTVNAALNTATDPIATFPQNIQ-EPWWR---Y 174 (492)
T ss_dssp CS----------SCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSH-HHHHHHHTCSSCCEEESSSCTT-CHHHH---H
T ss_pred CC----------CeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhcccchh-hHHHH---H
Confidence 75 89999999999 789999999999999999995 5454433322223322222221 21211 1
Q ss_pred hcChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCC
Q 005848 514 KLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN 593 (674)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~ 593 (674)
.++..++++++..+ +.+..+ ..++|++||+++|+|+|++|+|+||++ .+++.+.++++|++||.+
T Consensus 175 ~~~~~~~~~~~~~~----~~i~~i----------t~~dL~~fy~~~Y~p~n~~l~vvGdvd-~~~~~~~i~~~f~~~~~~ 239 (492)
T 3go9_A 175 RLKGSSLIGHDPGQ----PVTQPV----------DVEKLKQFYQQWYTPDAMTLYVVGNVD-SRSIAAQISKAFSELKGK 239 (492)
T ss_dssp HTTTSTTTTCCTTC----CCCSSC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCCCC
T ss_pred HhccCCcccCCCch----hhhhcC----------CHHHHHHHHHHhcCcCceEEEEEcCCC-HHHHHHHHHHHhhcCCCC
Confidence 22333333332222 112222 258999999999999999999999997 689999999999999865
Q ss_pred CCc-cccccc-ccCCCCcEEEEcCcCeeEEEEecccCCCCCCcchHH------HHHHHHhcCccchHHHhh--c-CCCCC
Q 005848 594 SPV-ERVKWK-AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSA------YVISKHISNVWLWDRVRV--S-GGAYG 662 (674)
Q Consensus 594 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al------~vl~~iLg~s~L~~~IRe--k-G~aYg 662 (674)
... ...+.. +........+..+.+|+++.+|++++..+++|+.++ .|++.||| ++|+.++|| + |++||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg-~~L~~~lre~~~~gl~y~ 318 (492)
T 3go9_A 240 RTAPAAVATLAPLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF-WHIKQVLEKNNQKNLKLG 318 (492)
T ss_dssp CSSCCCCCCCCCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCTTCEEE
T ss_pred CCCCCCCCCCCCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccccc
Confidence 431 111111 111122234556778889999999999889988776 79999998 799999998 6 99999
Q ss_pred cccccCC
Q 005848 663 GFCDFDS 669 (674)
Q Consensus 663 ~~~~~~~ 669 (674)
+++++..
T Consensus 319 ~~s~~~~ 325 (492)
T 3go9_A 319 FDCRVQY 325 (492)
T ss_dssp EEEEEET
T ss_pred cCchhhh
Confidence 9987653
No 25
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=1.8e-27 Score=282.20 Aligned_cols=281 Identities=14% Similarity=0.057 Sum_probs=219.9
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCC-HHHHHHHHhhcccceEEeeeeccC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLS-FVQLDQLIGRKTGGISVYPFTSSI 441 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~-~~el~~~i~~~~g~l~~~~~~~~~ 441 (674)
++.||++|++.+.+..+.+.+.+++++|+..+ +...++++|++||+++||++++ ..++.+.++.+||.+|++|+.
T Consensus 25 ~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~--- 101 (939)
T 1q2l_A 25 RLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAP--- 101 (939)
T ss_dssp EETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECS---
T ss_pred EecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECC---
Confidence 46899999999999888999999999999976 5667888888777788999997 479999999999999999976
Q ss_pred CCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhh
Q 005848 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (674)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~--~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (674)
+.++|++.++.++++.+|++++|++.+|.|++. ++++.++.+++.... +++...+...+...++++|
T Consensus 102 -------d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~----~~~~~~~~~~~~~~~~~~~ 170 (939)
T 1q2l_A 102 -------YRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMAR----TRDGMRMAQVSAETINPAH 170 (939)
T ss_dssp -------SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHT----TSHHHHHHHHHHHSSCTTS
T ss_pred -------CcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999999999999853 355555555554433 3344677788888889999
Q ss_pred hHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCcccc
Q 005848 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (674)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~ 599 (674)
||++...|. .+.|... .-..+.++|++||+++|+|+||+++|+||++ .+++.++++++|++||.+..+.+.
T Consensus 171 p~~~~~~G~--~~~l~~~------~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~-~~~l~~~v~~~f~~~~~~~~~~~~ 241 (939)
T 1q2l_A 171 PGSKFSGGN--LETLSDK------PGNPVQQALKDFHEKYYSANLMKAVIYSNKP-LPELAKMAADTFGRVPNKESKKPE 241 (939)
T ss_dssp GGGSCCSCC--HHHHSCB------TTBCHHHHHHHHHHHHCCTTTCEEEEEESSC-HHHHHHHHHHTGGGSCCCCCCCCC
T ss_pred CCccCCCCC--HHHHhcC------CCchHHHHHHHHHHhccCHhheEEEEEcCCC-HHHHHHHHHHHhhhhccCCCCCCC
Confidence 987755553 4555530 0001368999999999999999999999998 789999999999999865432111
Q ss_pred -cccccCC--CCcEEEEcC-cCeeEEEEecccCCCCCC-cchHHHHHHHHhc---CccchHHHhhcCCCCCccccc
Q 005848 600 -KWKAHLP--SANEAIVIP-TQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDF 667 (674)
Q Consensus 600 -~~~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~-d~~al~vl~~iLg---~s~L~~~IRekG~aYg~~~~~ 667 (674)
..+...+ ....+...| .++.++.+++++++..+. +..++.+++++|| +|+|+++||++|+||++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~ 317 (939)
T 1q2l_A 242 ITVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANS 317 (939)
T ss_dssp CCSCSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCCHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecc
Confidence 1111111 112222223 457788899998877665 7789999999998 689999999999999988864
No 26
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.95 E-value=2e-27 Score=257.24 Aligned_cols=291 Identities=10% Similarity=0.045 Sum_probs=219.9
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|+.+..|++|++|||+|+||++++..+ +.+.+. ..|+++|++|+.++|.|++ ++..++++.+|+++.++
T Consensus 50 ~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~-~~~~l~-~~G~~~na~t~~~~t~~~~-~~~~~~l~~~l~ll~~~ 126 (439)
T 1pp9_B 50 FIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFK-ITRGIE-AVGGKLSVTSTRENMAYTV-ECLRDDVDILMEFLLNV 126 (439)
T ss_dssp EESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHH-HHHHHH-HTTCEEEEEECSSCEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHH-HHHHHH-HhCCeEEEEecceEEEEEE-EeehhhHHHHHHHHHHH
Confidence 45668889999999999999999999999999877 556664 4599999999999999996 45678999999999999
Q ss_pred hhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCCH
Q 005848 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTF 170 (674)
Q Consensus 91 ~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt~ 170 (674)
+++|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|+ |||+++.+|++++|+++|.
T Consensus 127 ~~~p~f~~~~--~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it~ 188 (439)
T 1pp9_B 127 TTAPEFRRWE--VAAL---------------QPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTP 188 (439)
T ss_dssp HHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCCH
T ss_pred HhCCCCCHHH--HHHH---------------HHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcCH
Confidence 9999999999 9887 99999999998899999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccCC-CCcchhHHHHH-----Hhh-hhcccCCCc
Q 005848 171 EEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNT-GSFPRGLSLML-----RSM-GKWIYDMNP 243 (674)
Q Consensus 171 ~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~~-~~~p~~~~~~~-----~~~-~~~~~~~~~ 243 (674)
+++++||++||+|+|++++++|| |++++.++++ ..++ ++........ ...+.+..... ..+ -.| ...+
T Consensus 189 ~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~ 263 (439)
T 1pp9_B 189 VELHDYVQNHFTSARMALIGLGV-SHPVLKQVAE-QFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAALVA--ESAA 263 (439)
T ss_dssp HHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHH-HHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEEEE--ECCC
T ss_pred HHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHH-HHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEEEe--cCCC
Confidence 99999999999999999999999 9999999995 5554 3321110000 00000000000 000 000 0000
Q ss_pred cccccccchHHHHHHHHHcc--------CCcchHHHHHHHh-hc----------cCCCeEEEEEecCcCchhhHHHHHHH
Q 005848 244 FEPLKYEKPLMALKARLAEE--------GSKAVFSPLIEKY-IL----------NNPHCVTVEMQPDPEKASRDEAAEKE 304 (674)
Q Consensus 244 ~~~l~~~~~l~~l~~~l~~~--------~s~~~~~~l~~~~-~~----------~~~~~~~i~~~~d~~~~~~~~~~~~~ 304 (674)
. .-.....+..|...|++. .++++|+.++++. +. .....+.+.+.++|+..++..+.+.+
T Consensus 264 ~-~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 342 (439)
T 1pp9_B 264 I-GSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYN 342 (439)
T ss_dssp T-TSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHH
Confidence 0 001123466677777643 2356888888652 11 11233556677788888888888889
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHHH
Q 005848 305 ILAKV-KSSMTKEDLAELARATEEL 328 (674)
Q Consensus 305 ~l~~~-~~~~s~eel~~~k~~~~~~ 328 (674)
+++.+ +.+++++||+++|+.+...
T Consensus 343 ~l~~l~~~~~t~~el~~ak~~~~~~ 367 (439)
T 1pp9_B 343 QVKTIAQGNLSNPDVQAAKNKLKAG 367 (439)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99888 5689999999999976643
No 27
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.95 E-value=2.4e-28 Score=267.33 Aligned_cols=290 Identities=13% Similarity=0.115 Sum_probs=200.9
Q ss_pred cEEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHh---hccCcccceeecCCceEEEeecCCH--hhHHHHH
Q 005848 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLK---GSLNTFLNAFTYPDRTCYPVASTNT--KDFYNLV 84 (674)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~---~~~g~~~na~t~~d~t~y~~~~~~~--~~~~~~l 84 (674)
.+|++|++.|+.++.|+|||+|||+|+||++++..+ +.+.+. +.+|+.+||+|+.|+|.|++.+... ++++.+|
T Consensus 54 l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~-~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l 132 (492)
T 3go9_A 54 LIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQ-LQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDAL 132 (492)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHH-HHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHH
T ss_pred EEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHH
Confidence 367789999999999999999999999999999887 544332 3479999999999999999754322 7899999
Q ss_pred HHHHhhhhCCCCccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCc
Q 005848 85 DVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKV 164 (674)
Q Consensus 85 ~l~~d~~~~P~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 164 (674)
+++.|++.+|.|++++ |++| |++++++++...++|....+ ...+++.++++++.+| +.
T Consensus 133 ~ll~d~~~~p~f~~~~--~~~e---------------r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~ 190 (492)
T 3go9_A 133 AWLSDTAGNLAVSEQT--VNAA---------------LNTATDPIATFPQNIQEPWW---RYRLKGSSLIGHDPGQ--PV 190 (492)
T ss_dssp HHHHHHHHCCCCSHHH--HHHH---------------HTCSSCCEEESSSCTTCHHH---HHHTTTSTTTTCCTTC--CC
T ss_pred HHHHHHHhCCCCCHHH--HHHH---------------HHHHHHHHHhcccchhhHHH---HHHhccCCcccCCCch--hh
Confidence 9999999999999999 9887 77777888877777765443 3457778888887654 67
Q ss_pred cCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccc-cCCCCc-ch-hHHH--H-----HH-h
Q 005848 165 IPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE-NNTGSF-PR-GLSL--M-----LR-S 233 (674)
Q Consensus 165 i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~-~~~~~~-p~-~~~~--~-----~~-~ 233 (674)
|+++|.++|++||++||+|+||+|+++||+|++++.++++ ..|+.++..... ...... |. +... . .. .
T Consensus 191 i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v 269 (492)
T 3go9_A 191 TQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQIS-KAFSELKGKRTAPAAVATLAPLPPEPVSLMNEQAAQDTL 269 (492)
T ss_dssp CSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTCCCCCSSCCCCCCCCCCCSSCEEEEESSCSSEEE
T ss_pred hhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHH-HHhhcCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCcEE
Confidence 9999999999999999999999999999999999999995 666655432110 000000 00 0000 0 00 0
Q ss_pred hhhcccC--CCcc-ccccccchHHHHHHHHHccCCcchHHHHHH--Hh-hc--------cCCCeEEEEEecCcCchhhHH
Q 005848 234 MGKWIYD--MNPF-EPLKYEKPLMALKARLAEEGSKAVFSPLIE--KY-IL--------NNPHCVTVEMQPDPEKASRDE 299 (674)
Q Consensus 234 ~~~~~~~--~~~~-~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~--~~-~~--------~~~~~~~i~~~~d~~~~~~~~ 299 (674)
.-.|... .++. ..+........+...|+ ++++..+.+ +. +. .......+.+.++++..++..
T Consensus 270 ~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg----~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~ 345 (492)
T 3go9_A 270 SLMWDTPWHPIQDSMALSRYWRSDLAREALF----WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANM 345 (492)
T ss_dssp EEEEEEECCCCCSHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHHH
T ss_pred EEEecCCCCCcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHHH
Confidence 0001000 0110 01110111234445554 345666655 21 10 011122344455777888888
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 005848 300 AAEKEILAKV-KSSMTKEDLAELARATEE 327 (674)
Q Consensus 300 ~~~~~~l~~~-~~~~s~eel~~~k~~~~~ 327 (674)
+.+.++++.+ +.++|++||+++|+++..
T Consensus 346 ~~i~~el~~l~~~g~te~EL~~aK~~~~~ 374 (492)
T 3go9_A 346 TFVARELAALRANGLSQAEFDALMTQKND 374 (492)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8999999998 889999999999997653
No 28
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.95 E-value=4.4e-27 Score=280.22 Aligned_cols=284 Identities=13% Similarity=0.071 Sum_probs=222.0
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeeccC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSSI 441 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Gt~~~~~-~el~~~i~~~~g~l~~~~~~~~~ 441 (674)
++.||++|++.+.++.+.+++.++|++|+..+ ++..++++|++||+++||++++. .++.+.++.+||.+|++|+.
T Consensus 39 ~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~--- 115 (990)
T 3cww_A 39 ELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSG--- 115 (990)
T ss_dssp EETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECS---
T ss_pred EeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECC---
Confidence 46799999999999999999999999999965 55677777777777789999987 79999999999999999975
Q ss_pred CCCCCCeeEEEEEEEEccccHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhh
Q 005848 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (674)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~--~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (674)
+.++|++.++.++++.+|+++++++.+|.|++. ++++.++.++.... . +++...+...+.+.++++|
T Consensus 116 -------d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~---~-~~~~~~~~~~~~~~~~~~~ 184 (990)
T 3cww_A 116 -------EHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKN---V-MNDAWRLFQLEKATGNPKH 184 (990)
T ss_dssp -------SCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHH---H-TCHHHHHHHHHHHTSCTTS
T ss_pred -------CceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhc---c-CChHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999853 35555554443332 2 2333567788888899999
Q ss_pred hHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHHHHHHhcCCCCCCcccc
Q 005848 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (674)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~~~ 599 (674)
||++. ++|+.+.|..+-+ +....+.++|++||+++|+|+||+++|+||++ .+++.+.++++|+.|+.+..+. .
T Consensus 185 py~~~--~~G~~~~l~~~~~---~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~-~ 257 (990)
T 3cww_A 185 PFSKF--GTGNKYTLETRPN---QEGIDVRQELLKFHSAYYSSNLMAVVVLGRES-LDDLTNLVVKLFSEVENKNVPL-P 257 (990)
T ss_dssp GGGCC--CSCCHHHHTHHHH---HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSC-HHHHHHHHHHHHTTSCCCCCCC-C
T ss_pred CcccC--CCCCHHHHhhccc---cccchHHHHHHHHHHHhCCHhheEEEEEcCCC-HHHHHHHHHHHhcCCccCCCCC-C
Confidence 98864 4455667765521 01111468999999999999999999999998 7899999999999998754321 1
Q ss_pred cccc-cCC---CCcEEEEcCc-CeeEEEEecccCCCC-CCcchHHHHHHHHhc---CccchHHHhhcCCCCCcccccC
Q 005848 600 KWKA-HLP---SANEAIVIPT-QVNYVGKAANIFETG-YKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFD 668 (674)
Q Consensus 600 ~~~~-~~~---~~~~~~~~~~-~~~~v~~~~~~~~~~-~~d~~al~vl~~iLg---~s~L~~~IRekG~aYg~~~~~~ 668 (674)
.++. +.. .....+..+. ++.++.++|+.++.. +++..++.+++++|| .+.|+.+||++|+||++++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~ 335 (990)
T 3cww_A 258 EFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQK 335 (990)
T ss_dssp CCCSCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEE
T ss_pred CCCCCCCChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccc
Confidence 1111 111 1223344453 577899999998876 467899999999997 2568899999999999988765
No 29
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.94 E-value=4.3e-27 Score=253.94 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=214.8
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.|++++.|++|++|||+|+||+++ .+ +.+|+++||+|+.|+|.|++. +..++++.+|+++.++
T Consensus 28 ~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~--------~~-~~~G~~~na~t~~~~t~~~~~-~~~~~l~~~l~ll~~~ 97 (431)
T 3cx5_A 28 VFGSGAANENPYNNGVSNLWKNIFLSKENSA--------VA-AKEGLALSSNISRDFQSYIVS-SLPGSTDKSLDFLNQS 97 (431)
T ss_dssp EESCCGGGSCTTTTTHHHHHHHHHTSHHHHH--------HH-HHTTCEEEEEECSSCEEEEEE-ECSTTHHHHHHHHHHH
T ss_pred EEecCccCCCCCCcchHHHHHHHHhcCCCcc--------cH-HHcCCeeeeeecCCeEEEEEE-echhhHHHHHHHHHHH
Confidence 5667899999999999999999999998643 12 456999999999999999964 4667899999999999
Q ss_pred hhCCC---CccccchhhhcccccccCCCCCCccchhHHHHHhhhccCCh-HHHHHHHHHHHhCCCCCCCCCCCCCcCccC
Q 005848 91 VFFPK---CVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQP-DNILGRAAQQALFPDNAYGVDSGGDPKVIP 166 (674)
Q Consensus 91 ~~~P~---~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p-~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~ 166 (674)
+++|. |++++ |+++ |+++++|++...++| ..++.+.+.+.+|++|||+++++|++++|+
T Consensus 98 ~~~p~~~~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 160 (431)
T 3cx5_A 98 FIQQKANLLSSSN--FEAT---------------KKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLE 160 (431)
T ss_dssp HHTCSTTTTCHHH--HHHH---------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHH
T ss_pred HhCcccccCCHHH--HHHH---------------HHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHh
Confidence 99999 99999 9887 999999999888899 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC-CCCcchhHHHHH-------Hhh-hhc
Q 005848 167 KLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-TGSFPRGLSLML-------RSM-GKW 237 (674)
Q Consensus 167 ~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~-~~~~p~~~~~~~-------~~~-~~~ 237 (674)
++|.+++++||++||+|+|++++++||+|++++.++++ ..+..++....... ....+.+..... ..+ ..|
T Consensus 161 ~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 239 (431)
T 3cx5_A 161 NLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIE-SKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAV 239 (431)
T ss_dssp TCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHT-TSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEEEEEEE
T ss_pred hCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHH-HHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceEEEEEe
Confidence 99999999999999999999999999999999999995 54444432111000 000000000000 000 000
Q ss_pred ccCCCccccccccchHHHHHHHHHcc---------CCcchHHHHHHHhhc----------cCCCeEEEEEecCc-Cchhh
Q 005848 238 IYDMNPFEPLKYEKPLMALKARLAEE---------GSKAVFSPLIEKYIL----------NNPHCVTVEMQPDP-EKASR 297 (674)
Q Consensus 238 ~~~~~~~~~l~~~~~l~~l~~~l~~~---------~s~~~~~~l~~~~~~----------~~~~~~~i~~~~d~-~~~~~ 297 (674)
...+. .-.....+..+...|++. .++++++.++++.+. .....+.+.+.+++ +..++
T Consensus 240 --~~~~~-~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~ 316 (431)
T 3cx5_A 240 --EGEPV-NSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDD 316 (431)
T ss_dssp --ECCCT-TCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHH
T ss_pred --ecCCC-CCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHH
Confidence 00000 011233466677777642 345688888755322 11234567777888 78888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 005848 298 DEAAEKEILAKVKSSMTKEDLAELARATEEL 328 (674)
Q Consensus 298 ~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~ 328 (674)
..+.+.++++.+..+++++||+++|+.+...
T Consensus 317 ~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~ 347 (431)
T 3cx5_A 317 LIHFTLKQWNRLTISVTDTEVERAKSLLKLQ 347 (431)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888999999884499999999999976643
No 30
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.94 E-value=9.8e-27 Score=250.62 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=217.7
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCce----EEEeecCCH------hhH
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRT----CYPVASTNT------KDF 80 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t----~y~~~~~~~------~~~ 80 (674)
.|++|+..|+ .|++|++|||+|+||+++|..+.+.+.+...+|+++|++|+.|.| .|++.+... +++
T Consensus 30 ~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l 106 (425)
T 3d3y_A 30 RFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVL 106 (425)
T ss_dssp EEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHH
T ss_pred EEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhccchhHH
Confidence 5667776543 799999999999999999765557777755559999999999985 666544333 279
Q ss_pred HHHHHHHHhhhhCCC-----CccccchhhhcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhC-CCCCC
Q 005848 81 YNLVDVYFDAVFFPK-----CVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALF-PDNAY 154 (674)
Q Consensus 81 ~~~l~l~~d~~~~P~-----~~~~~~~f~~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~~p~ 154 (674)
+.+|+++.+++++|. |++++ |+++ |+++++|+++..++|..++.+.+.+.+| ++|||
T Consensus 107 ~~~l~ll~~~l~~p~~~~~~f~~~~--~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~ 169 (425)
T 3d3y_A 107 AEAVDFLKEIIFAPNIQAGQFEAET--FQRE---------------KENLKAYLESIVEDKQTYASLALQSVYFNQSEDQ 169 (425)
T ss_dssp HHHHHHHHHHHHSCSEETTEECHHH--HHHH---------------HHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTT
T ss_pred HHHHHHHHHHHhCcccccCCCCHHH--HHHH---------------HHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCc
Confidence 999999999999999 99998 9887 9999999998888999999999999999 79999
Q ss_pred CCCCCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhhhcccccccccccccC--CCCcchhH--HHH
Q 005848 155 GVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN--TGSFPRGL--SLM 230 (674)
Q Consensus 155 ~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i~~~~~~~~e~~~~~~~--~~~~p~~~--~~~ 230 (674)
+++..|++++|+++|.+++++||++||+|+|++++++||+|++++.+++ ..++ ++....... ....|.+. ...
T Consensus 170 ~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (425)
T 3d3y_A 170 KIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF--KQLP-FTPREEGKAAIFYNQPIRNVIEER 246 (425)
T ss_dssp TSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH--HTSC-CCCCCCCCCCSCCCCCCCSSCEEE
T ss_pred cCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH--HhCC-CCccccccccccccccCCCcceeE
Confidence 9999999999999999999999999999999999999999999999988 3444 432111000 00001000 000
Q ss_pred H-------Hhh-hhcccCCCccccccccchHHHHHHHHHccCCcchHHHHHHH-hhc--------cCCCeEEEEEecCcC
Q 005848 231 L-------RSM-GKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEK-YIL--------NNPHCVTVEMQPDPE 293 (674)
Q Consensus 231 ~-------~~~-~~~~~~~~~~~~l~~~~~l~~l~~~l~~~~s~~~~~~l~~~-~~~--------~~~~~~~i~~~~d~~ 293 (674)
. ..+ -.|..+ .+. .......+..|...|+++.++++|+.++++ .+. .....+.+.+.++|+
T Consensus 247 ~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~ 324 (425)
T 3d3y_A 247 TEREVLAQSKLNLAYNTD-IYY-GDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGK 324 (425)
T ss_dssp EEEEECSSEEEEEEEECC-CCT-TSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGG
T ss_pred EecCCccccEEEEEeecC-CCC-CCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHh
Confidence 0 000 011000 000 111234567788888766566688888755 211 123346677778888
Q ss_pred chhhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH
Q 005848 294 KASRDEAAEKEILAKV-KSSMTKEDLAELARATEELR 329 (674)
Q Consensus 294 ~~~~~~~~~~~~l~~~-~~~~s~eel~~~k~~~~~~~ 329 (674)
..++..+.+.++++.+ +.+++++||+++|+.+....
T Consensus 325 ~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~ 361 (425)
T 3d3y_A 325 NRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQY 361 (425)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhH
Confidence 8888888899999988 56899999999999766533
No 31
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.93 E-value=5.2e-26 Score=238.59 Aligned_cols=250 Identities=10% Similarity=0.014 Sum_probs=183.1
Q ss_pred ceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCCe
Q 005848 369 VKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPC 448 (674)
Q Consensus 369 ~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~~~~~~~ 448 (674)
++|+..+ +..++|+++++|++|+..++ ..++++|.++|+++||++++..+|.+.++.+||++|++++.
T Consensus 1 l~v~~~~-~~~~~v~~~~~~~~Gs~~e~-~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~---------- 68 (352)
T 3cx5_B 1 LTVSARD-APTKISTLAVKVHGGSRYAT-KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDR---------- 68 (352)
T ss_dssp CEEEEEC-CSCSEEEEEEEESCSGGGCS-STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECS----------
T ss_pred CEEEEee-CCCceEEEEEEEeeeccCCC-cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEcc----------
Confidence 4677755 44669999999999998865 45566666556667999999999999999999999999975
Q ss_pred eEEEEEEEEccccHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHh
Q 005848 449 CCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQ---RFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQM 525 (674)
Q Consensus 449 ~~~~~~~~~l~~~l~~~l~ll~dil~~p~f~~~~---~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 525 (674)
++++|++++++++++.+++++.|++++|.|++.+ +++.++.+.+.... +++...+...+...+++ ||++...
T Consensus 69 ~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~----~~p~~~~~~~~~~~~~~-~p~~~~~ 143 (352)
T 3cx5_B 69 EYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAE----QCPVKSAEDQLYAITFR-KGLGNPL 143 (352)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHT-TTTTSCS
T ss_pred ceEEEEEEechhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhC-CCCCCcc
Confidence 8999999999999999999999999999999532 44455555444433 34556777777776665 7765433
Q ss_pred chhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHHHH-HHHHhcCCCCCCccccccccc
Q 005848 526 GGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFV-GKFLDMLPTNSPVERVKWKAH 604 (674)
Q Consensus 526 ~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~ 604 (674)
. .+.++.+ ..++|++||+++|+|+|++++|+| ++ .+++++.+ +++|+.||.+........+..
T Consensus 144 ~----~~~l~~i----------t~~~l~~f~~~~y~~~n~~l~v~G-~~-~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~ 207 (352)
T 3cx5_B 144 L----YDGVERV----------SLQDIKDFADKVYTKENLEVSGEN-VV-EADLKRFVDESLLSTLPAGKSLVSKSEPKF 207 (352)
T ss_dssp S----CCSSSCC----------CHHHHHHHHHHHCCGGGEEEEEES-SC-HHHHHHHHHHSTTTTSCCCCCCCCCSCCCC
T ss_pred c----hhhhccC----------CHHHHHHHHHHhCCcCcEEEEEeC-CC-HHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Confidence 2 1222222 258999999999999999999999 97 78899999 899999986543211111111
Q ss_pred CCCCcEEEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhcCccchHHHhhc-CCC
Q 005848 605 LPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGA 660 (674)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~IRek-G~a 660 (674)
..+....+..+ .+..+.+| ++++++|++++.|++.|||+ +|||+ |++
T Consensus 208 ~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~vl~~iLg~-----~lre~~gl~ 255 (352)
T 3cx5_B 208 FLGEENRVRFI-GDSVAAIG---IPVNKASLAQYEVLANYLTS-----ALSELSGLI 255 (352)
T ss_dssp CCSCEEEEECS-SSEEEEEE---EEECTTTHHHHHHHHHHHHS-----TTSTTGGGC
T ss_pred ccCCeEEEecC-CCceEEEe---cCCCChhHHHHHHHHHHhCc-----chhcccCce
Confidence 11222223222 44455554 34678999999999999996 78986 876
No 32
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.93 E-value=7.2e-26 Score=266.28 Aligned_cols=275 Identities=10% Similarity=0.007 Sum_probs=204.5
Q ss_pred cccCCceEEEeecCCCcE--EEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhh--cccceEEeeeec
Q 005848 364 GDINGVKVLQHDLFTNDV--LYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGR--KTGGISVYPFTS 439 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~--~~g~l~~~~~~~ 439 (674)
.+.||++|++.+.+..+. +.+.+.|.. +.....++++|++||+++||++++..++...++. +||.+|++++.
T Consensus 91 ~l~nGl~vl~i~~~~~~~~~~~f~vg~~t---ep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~- 166 (1193)
T 3s5m_A 91 HKKAKTQVISLGTNDPLDVEQAFAFYVKT---LTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFN- 166 (1193)
T ss_dssp ETTTCCEEEEEEECCTTCCCEEEEEEEEC---CCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECS-
T ss_pred ECCCCCEEEEEECCCCCeEEEEEEEEECC---CCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcC-
Confidence 357999999998876542 223343333 2245567777777777789999999999999998 89999999975
Q ss_pred cCCCCCCCeeEEEEEEEEcc-ccHHHHHHHHHHHHhcCCCCchH----H-------------H----------------H
Q 005848 440 SIHGKEDPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTDQQ----R-------------F----------------K 485 (674)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~-~~l~~~l~ll~dil~~p~f~~~~----~-------------~----------------~ 485 (674)
|+++|++.++. ++++.+++++.|++++|.|++.+ + . +
T Consensus 167 ---------D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k 237 (1193)
T 3s5m_A 167 ---------DRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFN 237 (1193)
T ss_dssp ---------SEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEE
T ss_pred ---------CeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHH
Confidence 99999999998 99999999999999999976322 1 1 2
Q ss_pred HHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCc
Q 005848 486 QFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGC 565 (674)
Q Consensus 486 ~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~ 565 (674)
.++.+++.... +++..++...+...++++|||++...|. .+.|..++ .++|++||+++|+|+|+
T Consensus 238 ~vV~~E~k~~~----~~p~~~~~~~l~~~lf~~hpY~~~~~G~--~e~I~~lt----------~edl~~F~~~~Y~P~Na 301 (1193)
T 3s5m_A 238 GIVYNEMKGAL----SSPLEDLYHEEMKYMFPDNVHSNNSGGD--PKEITNLT----------YEEFKEFYYKNYNPKKV 301 (1193)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHCTTSGGGSCTTCC--HHHHTTCC----------HHHHHHHHHHHSCTTTC
T ss_pred HHHHHHHHHhh----CCHHHHHHHHHHHHhCCCCCCCCCCCCC--HHHHhhCC----------HHHHHHHHHHhcCccce
Confidence 23333333322 4566888888899999999998766554 45555443 58999999999999999
Q ss_pred EEEEEeCCcchhhHHHHHHHHHhcCCCCCCcc----cccccccCCCCcEEE-E----cCcCeeEEEEecccCCC-----C
Q 005848 566 LINMTADGKNLKNSERFVGKFLDMLPTNSPVE----RVKWKAHLPSANEAI-V----IPTQVNYVGKAANIFET-----G 631 (674)
Q Consensus 566 ~v~v~Gd~~~~~~~~~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~-~----~~~~~~~v~~~~~~~~~-----~ 631 (674)
+|+|+||++ .+++.+.++++|+.|+.++... ..+..++......+. . .+.+|.+++++|++++. +
T Consensus 302 ~l~v~Gdid-~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d 380 (1193)
T 3s5m_A 302 KVFFFSKNN-PTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNN 380 (1193)
T ss_dssp EEEEEESSC-THHHHHHHHHHHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----
T ss_pred EEEEEecCC-HHHHHHHHHHHhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccc
Confidence 999999998 6899999999999998543210 111111111111221 1 13467899999998753 2
Q ss_pred -----------------------------CCcchHHHHHHHHhc---CccchHHHhhcCCCCCcc-cccC
Q 005848 632 -----------------------------YKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGF-CDFD 668 (674)
Q Consensus 632 -----------------------------~~d~~al~vl~~iLg---~s~L~~~IRekG~aYg~~-~~~~ 668 (674)
++|++++.|+++||| +|||+++|||+|+||+++ +++.
T Consensus 381 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~ 450 (1193)
T 3s5m_A 381 HNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLN 450 (1193)
T ss_dssp ------------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeecccccc
Confidence 478999999999997 899999999999999987 5554
No 33
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.93 E-value=4.6e-26 Score=239.00 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=157.0
Q ss_pred EEEEEeeCCCCCCCChhHHHHHHhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhHHHHHHHHHhh
Q 005848 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (674)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~l~~d~ 90 (674)
+|++|++.| ++.|+||++|||+|+||++++..+ +.+.+ +.+|+++||+|+.|+|.|++ ++..++++.+|+++.|+
T Consensus 18 ~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~-l~~~l-~~~G~~~na~t~~~~t~~~~-~~~~~~l~~~l~ll~d~ 92 (352)
T 3cx5_B 18 KVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALK-LVRES-ELLGGTFKSTLDREYITLKA-TFLKDDLPYYVNALADV 92 (352)
T ss_dssp EESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHH-HHHHH-HHHTCEEEEEECSSCEEEEE-EEEGGGHHHHHHHHHHH
T ss_pred EEeeeccCC--CcccHHHHHHHHhccCcCCCCHHH-HHHHH-HHhCCeEEEEEccceEEEEE-EechhhHHHHHHHHHHH
Confidence 466778776 489999999999999999999888 66666 45699999999999999996 55678999999999999
Q ss_pred hhCCCCccccchhh-hcccccccCCCCCCccchhHHHHHhhhccCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 005848 91 VFFPKCVEDFQTFQ-QEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (674)
Q Consensus 91 ~~~P~~~~~~~~f~-~e~~~~~~~~~~~~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~lt 169 (674)
+++|.|++++ |+ ++ |+++++|++...++|..++.+.+.+.+|+ |||+++.. .++|+++|
T Consensus 93 ~~~p~f~~~~--~~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it 152 (352)
T 3cx5_B 93 LYKTAFKPHE--LTESV---------------LPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVS 152 (352)
T ss_dssp HHHBCCCHHH--HHHTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC
T ss_pred HhCCCCCHHH--HHHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCC
Confidence 9999999999 97 76 99999999998899999999999999997 99998873 78999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHh-hhccccccc
Q 005848 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRIL-SEASMNTIE 212 (674)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~i~G~~d~~~~~~~i-~~~~~~~~e 212 (674)
.+++++||++||+|+|++++++| +|++++.+++ + ..|+.++
T Consensus 153 ~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~-~~f~~~~ 194 (352)
T 3cx5_B 153 LQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDE-SLLSTLP 194 (352)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHH-STTTTSC
T ss_pred HHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHH-HhhccCC
Confidence 99999999999999999999999 9999999999 5 5565543
No 34
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=2e-24 Score=257.26 Aligned_cols=274 Identities=12% Similarity=0.070 Sum_probs=201.7
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHH--hhcccceEEeeeeccC
Q 005848 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLI--GRKTGGISVYPFTSSI 441 (674)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i--~~~~g~l~~~~~~~~~ 441 (674)
.+.||++|++.+.+..+.+ +.+.+.. +.+...+++||++||+++||++++..++...+ +.+||.+|++|+.
T Consensus 42 ~l~nGl~v~~~~~~~~~~~-~~vg~~~---e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~--- 114 (995)
T 2fge_A 42 HKKTGCEVMSVSNEDENKV-FGVVFRT---PPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYP--- 114 (995)
T ss_dssp ETTTCCEEEEEECSCSSEE-EEEEEEC---CCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECS---
T ss_pred ECCCCCEEEEEEcCCCccE-EEEEeCC---CCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECC---
Confidence 4579999999998877653 3443332 22445777777777777899999988755444 4678899999975
Q ss_pred CCCCCCeeEEEEEEEEc-cccHHHHHHHHHHHHhcCCC--CchH--HH---------------HHHHHHHHHhhhhhhcc
Q 005848 442 HGKEDPCCCMVVRGKAM-AGQAEDLFNLFNCVLQEVQL--TDQQ--RF---------------KQFVSQSKARMENRLRG 501 (674)
Q Consensus 442 ~~~~~~~~~~~~~~~~l-~~~l~~~l~ll~dil~~p~f--~~~~--~~---------------~~i~~~~~~~~~~~~~~ 501 (674)
|.++|++.+. .++++.+++++.|++.+|.| ++.+ ++ +.++.+++.... +
T Consensus 115 -------d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~----~ 183 (995)
T 2fge_A 115 -------DRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVY----S 183 (995)
T ss_dssp -------SEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHT----T
T ss_pred -------CceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhh----C
Confidence 8999999886 57999999999999999999 8532 22 224444444332 4
Q ss_pred CcHHHHHHHHHhhcChhhhHHHHhchhhHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCCcchhhHHH
Q 005848 502 SGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSER 581 (674)
Q Consensus 502 ~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~~~~~~~ 581 (674)
++...+...+...++++|+|++...|. .+.|..+ ..++|++||+++|+|+||+|+|+||++ .+++.+
T Consensus 184 ~p~~~~~~~~~~~~~~~~py~~~~~G~--~~~i~~~----------t~~~l~~f~~~~Y~p~n~~l~v~Gd~d-~~~~~~ 250 (995)
T 2fge_A 184 QPDNILGRIAQQALSPENTYGVDSGGD--PKDIPNL----------TFEEFKEFHRQYYHPSNARIWFYGDDD-PVHRLR 250 (995)
T ss_dssp SHHHHHHHHHHHHHCTTSGGGSCTTCC--TTTGGGC----------CHHHHHHHHHHHSSGGGEEEEEEESSC-HHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCC--hHhhhhc----------CHHHHHHHHHHhCCccceEEEEEcCCC-HHHHHH
Confidence 456788888899999999998765554 3344433 258999999999999999999999998 789999
Q ss_pred HHHHHHhcCC--CCCCcccccccccCC-CC--cEEEEc---C--cCeeEEEEecccCCCC--CCcchHHHHHHHHhc---
Q 005848 582 FVGKFLDMLP--TNSPVERVKWKAHLP-SA--NEAIVI---P--TQVNYVGKAANIFETG--YKLNGSAYVISKHIS--- 646 (674)
Q Consensus 582 ~l~~~~~~l~--~~~~~~~~~~~~~~~-~~--~~~~~~---~--~~~~~v~~~~~~~~~~--~~d~~al~vl~~iLg--- 646 (674)
.++++|+.|+ ....+...+..++.. +. ...+.+ . .++.++.++|++++.. ++|+.++.|++++||
T Consensus 251 ~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~ 330 (995)
T 2fge_A 251 VLSEYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTP 330 (995)
T ss_dssp HHHHHHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHhhCCccccCCCcccCCCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999998 322110111111111 11 112322 1 3577899999998876 589999999999997
Q ss_pred CccchHHHhhcCCCCCcccc-cC
Q 005848 647 NVWLWDRVRVSGGAYGGFCD-FD 668 (674)
Q Consensus 647 ~s~L~~~IRekG~aYg~~~~-~~ 668 (674)
+|||+++||++|++|+++++ +.
T Consensus 331 ~S~L~~~l~e~gl~~~~~~~~~~ 353 (995)
T 2fge_A 331 ASPLRKILLESGLGEALVSSGLS 353 (995)
T ss_dssp TSHHHHHHHHTTSCSEECSCEEE
T ss_pred CCHHHHHHHhcCCCcceeecccc
Confidence 78999999999999998876 54
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.56 E-value=2.5e-08 Score=94.26 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=49.6
Q ss_pred EEEcCcCeeEEEEecccCCCCCCcchHHHHHHHHhc---CccchHHHhhcCCCCCcccccC
Q 005848 611 AIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFD 668 (674)
Q Consensus 611 ~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~IRekG~aYg~~~~~~ 668 (674)
.+..+.++.++++|+++++++++|++++.|++.||| +||||++|||+|+||++++++.
T Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~ 77 (197)
T 3ih6_A 17 TLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTM 77 (197)
T ss_dssp -----CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEE
T ss_pred EEECCCCCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccc
Confidence 345567788999999999999999999999999998 6899999999999999988765
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=96.97 E-value=0.0097 Score=55.32 Aligned_cols=167 Identities=9% Similarity=0.074 Sum_probs=98.1
Q ss_pred EEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCCeeEEEEEEEEccc
Q 005848 381 VLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAG 460 (674)
Q Consensus 381 ~v~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Gt~~~~~~el~~~i~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 460 (674)
..++.+.|.+.....++...+.++..+|.. |...+=+.+|.+ .|...+++..... ......+.+++.+-.+
T Consensus 24 ~~~v~~~~~~~~~~~~d~~al~vl~~iLgg-g~sSrL~~~lre----~gl~y~~~~~~~~----~~~~g~~~i~~~~~~~ 94 (197)
T 3ih6_A 24 TPLVAAMYHLPAAGSPDFVGLDLAATILAD-TPSSRLYHALVP----TKLASGVFGFTMD----QLDPGLAMFGAQLQPG 94 (197)
T ss_dssp SCEEEEEEECCCTTSTTHHHHHHHHHHHHS-STTSHHHHHHTT----TTSCSEEEEEEET----TSSSCEEEEEEECCTT
T ss_pred CceEEEEEecCCCCCCcHHHHHHHHHHHcC-CCCchHHHHHHh----cCceEEEEecccc----ccCCeEEEEEEEECCC
Confidence 445555665555544444556777776653 543333444443 2333333332211 1123567888888877
Q ss_pred -cHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHhhhhhhccCcHHHHHHHHHhhcChhhhHHHHhchhhHHHHHHH
Q 005848 461 -QAEDLFNLFNCVLQE---VQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQA 536 (674)
Q Consensus 461 -~l~~~l~ll~dil~~---p~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 536 (674)
+++++++.+.+.+.+ -.|+ +++++.++.+.+..+..... +...++.......++ +.+. . -....+.+..
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it-~~el~~ak~~~~~~~~~~~~-~~~~~a~~l~~~~~~-g~~~-~---~~~~~~~i~~ 167 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFS-QEELERARSKWLTAWQQTYA-DPEKVGVALSEAIAS-GDWR-L---FFLQRDRVRE 167 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCC-HHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHT-TCTT-H---HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHc-CCHH-H---HHHHHHHHHh
Confidence 699999988887755 3577 47788888888888876665 334566555444333 1110 0 0111122221
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCC
Q 005848 537 LEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADG 573 (674)
Q Consensus 537 l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~ 573 (674)
+ ..++++++.+++|.+++.++++.|-.
T Consensus 168 v----------T~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 168 A----------KLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp C----------CHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred C----------CHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 1 25899999999999999999888754
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=65.53 E-value=18 Score=22.67 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 005848 300 AAEKEILAKV-KSSMTKEDLAELARATEEL 328 (674)
Q Consensus 300 ~~~~~~l~~~-~~~~s~eel~~~k~~~~~~ 328 (674)
++++.+++.+ ++|++.+|+..+...+..+
T Consensus 3 aalkselqalkkegfspeelaaleselqal 32 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQAL 32 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3466778877 9999999999887766543
Done!