Query 005849
Match_columns 674
No_of_seqs 219 out of 1951
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 14:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 1E-159 3E-164 1352.1 56.6 607 60-671 2-612 (877)
2 PLN02943 aminoacyl-tRNA ligase 100.0 2E-147 4E-152 1313.4 63.5 649 15-671 14-682 (958)
3 PLN02381 valyl-tRNA synthetase 100.0 2E-143 5E-148 1283.7 58.4 611 59-671 96-781 (1066)
4 PRK05729 valS valyl-tRNA synth 100.0 2E-143 5E-148 1276.6 57.7 600 59-671 5-608 (874)
5 KOG0432 Valyl-tRNA synthetase 100.0 6E-144 1E-148 1191.5 47.7 611 59-671 42-720 (995)
6 PTZ00419 valyl-tRNA synthetase 100.0 6E-143 1E-147 1286.9 59.8 612 59-671 24-716 (995)
7 TIGR00422 valS valyl-tRNA synt 100.0 5E-142 1E-146 1266.0 59.5 607 60-671 2-612 (861)
8 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-141 3E-146 1218.5 46.8 609 55-671 10-690 (933)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 6E-140 1E-144 1255.7 59.3 610 59-671 7-684 (975)
10 PRK14900 valS valyl-tRNA synth 100.0 5E-140 1E-144 1257.5 57.9 603 60-671 16-627 (1052)
11 PTZ00427 isoleucine-tRNA ligas 100.0 3E-139 7E-144 1249.6 57.1 609 60-671 69-818 (1205)
12 PLN02882 aminoacyl-tRNA ligase 100.0 3E-137 6E-142 1237.6 59.8 607 59-671 4-713 (1159)
13 PRK05743 ileS isoleucyl-tRNA s 100.0 6E-136 1E-140 1212.4 58.2 605 54-671 10-680 (912)
14 PRK13804 ileS isoleucyl-tRNA s 100.0 1E-135 3E-140 1212.1 59.7 607 54-671 15-718 (961)
15 PLN02843 isoleucyl-tRNA synthe 100.0 3E-134 7E-139 1199.9 56.1 596 64-671 4-707 (974)
16 PRK13208 valS valyl-tRNA synth 100.0 4E-133 9E-138 1181.4 59.4 601 59-671 6-617 (800)
17 PF00133 tRNA-synt_1: tRNA syn 100.0 2E-134 3E-139 1157.9 38.9 552 70-625 1-601 (601)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 3E-132 7E-137 1183.3 56.7 607 60-671 3-702 (861)
19 PLN02959 aminoacyl-tRNA ligase 100.0 1E-119 2E-124 1083.4 55.4 601 60-671 10-801 (1084)
20 TIGR00395 leuS_arch leucyl-tRN 100.0 3E-117 8E-122 1054.5 51.3 573 66-650 2-685 (938)
21 TIGR00396 leuS_bact leucyl-tRN 100.0 1E-110 2E-115 987.0 48.3 530 63-671 1-689 (842)
22 KOG0434 Isoleucyl-tRNA synthet 100.0 7E-111 2E-115 901.7 33.5 613 57-672 2-698 (1070)
23 PRK12300 leuS leucyl-tRNA synt 100.0 1E-109 2E-114 986.5 44.3 547 105-671 1-656 (897)
24 PLN02563 aminoacyl-tRNA ligase 100.0 5E-109 1E-113 973.9 48.4 508 59-646 76-784 (963)
25 PRK00390 leuS leucyl-tRNA synt 100.0 1E-108 3E-113 967.1 49.6 519 60-671 2-651 (805)
26 KOG0433 Isoleucyl-tRNA synthet 100.0 3E-108 6E-113 890.9 42.6 592 60-671 27-707 (937)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 2.2E-90 4.7E-95 790.0 40.9 510 60-649 2-643 (814)
28 cd00817 ValRS_core catalytic c 100.0 6.7E-85 1.5E-89 710.3 36.8 378 90-624 1-382 (382)
29 KOG0435 Leucyl-tRNA synthetase 100.0 1.9E-84 4E-89 699.7 33.0 503 66-649 34-681 (876)
30 cd00818 IleRS_core catalytic c 100.0 2E-74 4.2E-79 618.4 33.8 336 90-624 1-338 (338)
31 KOG0437 Leucyl-tRNA synthetase 100.0 4.1E-73 9E-78 614.8 22.7 575 61-650 9-772 (1080)
32 TIGR00398 metG methionyl-tRNA 100.0 4.3E-71 9.3E-76 628.4 34.3 382 92-649 1-393 (530)
33 PRK12268 methionyl-tRNA synthe 100.0 3.1E-71 6.8E-76 632.9 30.1 383 90-648 3-399 (556)
34 PRK12267 methionyl-tRNA synthe 100.0 3E-69 6.6E-74 625.0 33.0 356 90-649 4-365 (648)
35 COG0143 MetG Methionyl-tRNA sy 100.0 1.4E-68 3E-73 593.9 33.9 383 89-648 4-398 (558)
36 PRK00133 metG methionyl-tRNA s 100.0 1.7E-67 3.6E-72 611.5 35.6 381 90-648 2-395 (673)
37 PLN02610 probable methionyl-tR 100.0 9.9E-67 2.1E-71 607.3 35.3 386 85-650 12-416 (801)
38 PRK11893 methionyl-tRNA synthe 100.0 8.7E-67 1.9E-71 591.5 32.7 355 90-647 1-363 (511)
39 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.8E-65 4E-70 545.0 31.4 311 91-624 1-312 (312)
40 PLN02224 methionine-tRNA ligas 100.0 2.2E-64 4.7E-69 572.3 34.8 356 89-648 68-431 (616)
41 PF09334 tRNA-synt_1g: tRNA sy 100.0 5.8E-66 1.3E-70 561.2 18.8 378 92-647 1-391 (391)
42 cd00814 MetRS_core catalytic c 100.0 4E-60 8.7E-65 505.0 28.9 313 91-624 1-319 (319)
43 cd00812 LeuRS_core catalytic c 100.0 1E-56 2.2E-61 477.4 25.5 297 91-626 1-314 (314)
44 KOG0436 Methionyl-tRNA synthet 100.0 3.2E-54 7E-59 444.7 25.6 358 88-648 37-409 (578)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 1.5E-41 3.2E-46 378.1 22.3 311 81-647 16-327 (463)
46 KOG1247 Methionyl-tRNA synthet 100.0 2E-42 4.4E-47 356.8 14.0 387 87-649 11-410 (567)
47 TIGR00435 cysS cysteinyl-tRNA 100.0 5.6E-40 1.2E-44 364.7 23.5 313 81-648 14-327 (465)
48 TIGR03447 mycothiol_MshC cyste 100.0 1.5E-39 3.3E-44 350.5 18.9 333 81-668 31-384 (411)
49 PRK12418 cysteinyl-tRNA synthe 100.0 2.7E-39 5.9E-44 347.1 20.3 329 90-673 10-362 (384)
50 PRK14536 cysS cysteinyl-tRNA s 100.0 4.2E-38 9.2E-43 347.2 22.9 305 91-647 25-341 (490)
51 PLN02946 cysteine-tRNA ligase 100.0 2.1E-38 4.5E-43 352.8 18.3 332 51-647 51-384 (557)
52 PRK14535 cysS cysteinyl-tRNA s 100.0 7.5E-37 1.6E-41 341.5 23.3 302 91-645 250-567 (699)
53 PTZ00399 cysteinyl-tRNA-synthe 100.0 2.9E-36 6.3E-41 345.1 22.5 322 81-650 53-379 (651)
54 PRK14534 cysS cysteinyl-tRNA s 100.0 1.3E-35 2.7E-40 325.9 22.6 299 99-646 29-340 (481)
55 COG0215 CysS Cysteinyl-tRNA sy 100.0 4.2E-34 9.1E-39 307.4 19.8 335 81-669 15-371 (464)
56 cd00672 CysRS_core catalytic c 100.0 2.9E-32 6.3E-37 272.9 18.6 86 539-625 128-213 (213)
57 PF01406 tRNA-synt_1e: tRNA sy 100.0 4.2E-31 9.1E-36 271.7 16.1 290 91-634 10-300 (300)
58 cd00674 LysRS_core_class_I cat 100.0 1.9E-28 4.1E-33 261.1 19.7 127 90-226 19-153 (353)
59 KOG2007 Cysteinyl-tRNA synthet 99.9 1E-26 2.2E-31 246.7 22.2 315 81-646 48-365 (586)
60 PRK01611 argS arginyl-tRNA syn 99.9 1.3E-26 2.7E-31 261.8 21.9 133 78-229 99-233 (507)
61 PRK00750 lysK lysyl-tRNA synth 99.9 4.7E-25 1E-29 247.6 17.5 101 539-643 234-336 (510)
62 TIGR00467 lysS_arch lysyl-tRNA 99.9 2.3E-21 5.1E-26 216.3 17.3 98 90-195 18-123 (515)
63 TIGR00456 argS arginyl-tRNA sy 99.9 2E-20 4.4E-25 213.8 23.0 141 78-225 101-283 (566)
64 PF13603 tRNA-synt_1_2: Leucyl 99.9 2.1E-21 4.6E-26 188.7 12.3 129 252-382 8-185 (185)
65 COG0018 ArgS Arginyl-tRNA synt 99.8 8.8E-20 1.9E-24 205.7 24.2 154 67-226 93-288 (577)
66 PRK12451 arginyl-tRNA syntheta 99.8 5.3E-18 1.2E-22 193.4 22.6 147 78-229 101-284 (562)
67 cd00671 ArgRS_core catalytic c 99.8 2.8E-18 6E-23 172.7 13.5 122 91-234 1-123 (212)
68 PLN02286 arginine-tRNA ligase 99.8 9.1E-17 2E-21 183.5 25.1 135 88-229 115-288 (576)
69 PF00750 tRNA-synt_1d: tRNA sy 99.7 8.6E-17 1.9E-21 173.9 14.3 150 76-229 7-197 (354)
70 PF01921 tRNA-synt_1f: tRNA sy 99.5 2.1E-14 4.6E-19 152.0 4.9 98 540-639 235-336 (360)
71 COG1384 LysS Lysyl-tRNA synthe 99.3 3.2E-11 6.9E-16 131.3 13.4 100 90-195 19-126 (521)
72 cd00802 class_I_aaRS_core cata 99.3 1E-11 2.2E-16 117.2 8.2 76 95-186 2-77 (143)
73 PRK04156 gltX glutamyl-tRNA sy 99.2 1.5E-09 3.2E-14 122.5 24.6 97 93-225 102-198 (567)
74 TIGR00464 gltX_bact glutamyl-t 99.1 3.9E-09 8.4E-14 118.1 20.9 95 94-225 3-97 (470)
75 PRK01406 gltX glutamyl-tRNA sy 99.1 1.1E-08 2.5E-13 114.5 21.7 95 93-225 5-107 (476)
76 PRK12558 glutamyl-tRNA synthet 98.9 3.7E-08 7.9E-13 108.7 18.2 94 94-225 4-97 (445)
77 TIGR00463 gltX_arch glutamyl-t 98.9 1.6E-07 3.6E-12 106.0 22.9 97 91-225 92-188 (560)
78 PLN03233 putative glutamate-tR 98.9 3.4E-07 7.4E-12 102.4 23.4 95 93-225 12-106 (523)
79 PRK12410 glutamylglutaminyl-tR 98.8 2E-07 4.3E-12 102.5 19.8 91 97-225 4-94 (433)
80 PLN02907 glutamate-tRNA ligase 98.8 8.8E-07 1.9E-11 103.7 24.5 108 79-224 200-307 (722)
81 PRK05347 glutaminyl-tRNA synth 98.8 1.4E-06 3.1E-11 97.8 24.4 96 93-225 30-125 (554)
82 cd00418 GlxRS_core catalytic c 98.8 4E-07 8.6E-12 92.2 18.1 89 94-220 3-92 (230)
83 PRK14895 gltX glutamyl-tRNA sy 98.8 3E-07 6.6E-12 102.7 18.5 95 94-225 6-100 (513)
84 PLN02627 glutamyl-tRNA synthet 98.6 2.5E-06 5.5E-11 95.6 21.2 95 93-225 46-149 (535)
85 PRK14703 glutaminyl-tRNA synth 98.6 5.5E-06 1.2E-10 97.0 22.9 96 93-225 32-127 (771)
86 cd09287 GluRS_non_core catalyt 98.5 2.2E-07 4.9E-12 94.4 8.3 95 94-224 3-97 (240)
87 KOG1195 Arginyl-tRNA synthetas 98.2 2.2E-05 4.9E-10 85.4 13.5 159 67-229 87-282 (567)
88 cd00807 GlnRS_core catalytic c 98.2 7.1E-06 1.5E-10 83.2 8.9 93 94-224 3-95 (238)
89 TIGR03838 queuosine_YadB gluta 98.1 5.5E-06 1.2E-10 86.2 8.0 94 95-225 3-96 (272)
90 PTZ00402 glutamyl-tRNA synthet 98.1 8.9E-06 1.9E-10 92.2 10.2 97 92-225 52-148 (601)
91 COG0008 GlnS Glutamyl- and glu 98.1 2.2E-06 4.7E-11 95.4 4.4 96 93-225 10-105 (472)
92 PF00749 tRNA-synt_1c: tRNA sy 98.1 6.1E-06 1.3E-10 88.1 6.9 95 94-225 3-97 (314)
93 PTZ00437 glutaminyl-tRNA synth 98.1 1.2E-05 2.6E-10 90.5 9.3 96 93-226 52-147 (574)
94 TIGR00440 glnS glutaminyl-tRNA 98.0 1.2E-05 2.6E-10 90.2 8.6 96 94-226 2-97 (522)
95 KOG4426 Arginyl-tRNA synthetas 98.0 3.1E-05 6.7E-10 82.6 10.1 147 88-240 186-370 (656)
96 PRK05710 glutamyl-Q tRNA(Asp) 97.9 2.2E-05 4.8E-10 82.7 8.0 96 93-225 6-101 (299)
97 PLN02859 glutamine-tRNA ligase 97.9 5.2E-05 1.1E-09 88.2 9.8 96 93-226 265-360 (788)
98 KOG1147 Glutamyl-tRNA syntheta 97.6 0.00019 4.1E-09 78.6 8.8 99 93-229 201-299 (712)
99 cd00808 GluRS_core catalytic c 97.5 0.00031 6.7E-09 71.8 9.0 89 94-220 3-100 (239)
100 KOG1148 Glutaminyl-tRNA synthe 96.7 0.0023 5.1E-08 71.0 5.8 96 92-225 248-343 (764)
101 KOG1149 Glutamyl-tRNA syntheta 96.6 0.0098 2.1E-07 64.2 9.5 132 96-262 37-190 (524)
102 PRK13354 tyrosyl-tRNA syntheta 95.4 0.015 3.2E-07 64.5 4.2 59 538-600 185-244 (410)
103 cd00395 Tyr_Trp_RS_core cataly 95.3 0.049 1.1E-06 57.1 7.5 74 538-615 152-238 (273)
104 PRK05912 tyrosyl-tRNA syntheta 95.0 0.021 4.5E-07 63.3 3.9 59 537-599 186-245 (408)
105 cd00805 TyrRS_core catalytic c 94.6 0.036 7.8E-07 58.0 4.5 53 540-596 152-205 (269)
106 PF00579 tRNA-synt_1b: tRNA sy 94.6 0.046 1E-06 57.9 5.3 63 538-600 148-213 (292)
107 cd00802 class_I_aaRS_core cata 94.4 0.065 1.4E-06 50.3 5.2 50 540-591 94-143 (143)
108 PLN02563 aminoacyl-tRNA ligase 94.0 0.088 1.9E-06 64.3 6.5 79 372-453 212-304 (963)
109 PRK12556 tryptophanyl-tRNA syn 93.7 0.076 1.7E-06 57.2 4.8 59 538-597 148-213 (332)
110 cd00808 GluRS_core catalytic c 93.6 0.45 9.8E-06 48.8 10.0 76 539-618 118-194 (239)
111 COG0495 LeuS Leucyl-tRNA synth 93.5 0.078 1.7E-06 63.0 4.6 81 374-456 137-232 (814)
112 PRK08560 tyrosyl-tRNA syntheta 93.2 0.1 2.2E-06 56.3 4.7 58 538-599 167-228 (329)
113 TIGR00396 leuS_bact leucyl-tRN 92.7 0.17 3.6E-06 61.4 6.0 81 372-454 130-225 (842)
114 PRK12284 tryptophanyl-tRNA syn 92.7 0.12 2.5E-06 57.2 4.2 60 538-598 147-214 (431)
115 PRK12282 tryptophanyl-tRNA syn 91.9 0.15 3.2E-06 55.1 3.8 63 537-599 140-209 (333)
116 PRK12285 tryptophanyl-tRNA syn 91.1 0.18 3.9E-06 55.1 3.5 59 539-599 203-265 (368)
117 TIGR00233 trpS tryptophanyl-tR 91.1 0.17 3.7E-06 54.6 3.3 60 538-599 138-206 (328)
118 PTZ00126 tyrosyl-tRNA syntheta 90.8 0.3 6.5E-06 53.7 4.9 59 538-599 209-271 (383)
119 cd00806 TrpRS_core catalytic c 90.4 0.29 6.3E-06 51.6 4.2 59 539-599 137-205 (280)
120 COG0180 TrpS Tryptophanyl-tRNA 90.3 0.24 5.2E-06 52.6 3.5 58 539-598 145-211 (314)
121 TIGR00234 tyrS tyrosyl-tRNA sy 89.8 0.41 8.8E-06 52.6 4.8 58 539-600 177-235 (377)
122 KOG0435 Leucyl-tRNA synthetase 89.6 0.29 6.3E-06 55.9 3.5 75 374-451 160-249 (876)
123 COG0162 TyrS Tyrosyl-tRNA synt 88.2 0.44 9.6E-06 52.4 3.7 56 539-597 180-235 (401)
124 PRK00927 tryptophanyl-tRNA syn 87.8 0.45 9.7E-06 51.4 3.4 61 538-599 137-209 (333)
125 PRK00390 leuS leucyl-tRNA synt 87.7 0.91 2E-05 54.9 6.3 84 371-456 132-229 (805)
126 PRK12285 tryptophanyl-tRNA syn 86.2 2.6 5.6E-05 46.2 8.2 43 89-136 64-106 (368)
127 PLN02486 aminoacyl-tRNA ligase 85.1 1.1 2.4E-05 49.2 4.7 66 541-615 221-290 (383)
128 PRK12283 tryptophanyl-tRNA syn 85.0 0.46 9.9E-06 52.1 1.7 24 576-599 254-277 (398)
129 cd00671 ArgRS_core catalytic c 83.7 2.3 4.9E-05 42.8 6.0 50 542-592 162-212 (212)
130 cd00395 Tyr_Trp_RS_core cataly 83.2 2.7 6E-05 44.1 6.5 32 100-135 7-39 (273)
131 PLN02486 aminoacyl-tRNA ligase 82.2 7.2 0.00016 43.0 9.5 45 89-138 71-116 (383)
132 cd09287 GluRS_non_core catalyt 81.4 4.6 0.0001 41.5 7.2 92 541-637 125-235 (240)
133 PF01927 Mut7-C: Mut7-C RNAse 79.5 2.5 5.4E-05 40.0 4.3 21 119-139 12-32 (147)
134 cd00806 TrpRS_core catalytic c 79.3 2.6 5.6E-05 44.5 4.7 33 100-135 7-39 (280)
135 cd00807 GlnRS_core catalytic c 79.2 7.2 0.00016 40.0 7.7 91 541-636 123-232 (238)
136 cd07962 Anticodon_Ia_Val Antic 76.2 4.5 9.8E-05 37.3 5.0 28 624-651 1-28 (135)
137 PTZ00348 tyrosyl-tRNA syntheta 76.0 3.1 6.7E-05 49.1 4.5 59 538-599 174-236 (682)
138 PRK13354 tyrosyl-tRNA syntheta 73.8 5.3 0.00011 44.5 5.5 45 89-138 31-76 (410)
139 cd00805 TyrRS_core catalytic c 73.6 2.7 5.7E-05 44.1 2.9 33 100-136 8-41 (269)
140 PRK08560 tyrosyl-tRNA syntheta 73.5 5.9 0.00013 42.7 5.7 40 91-135 30-69 (329)
141 PRK12284 tryptophanyl-tRNA syn 64.6 14 0.00031 41.1 6.3 97 100-224 10-107 (431)
142 TIGR00234 tyrS tyrosyl-tRNA sy 63.0 6.2 0.00013 43.5 3.2 40 91-135 30-70 (377)
143 PRK05912 tyrosyl-tRNA syntheta 62.2 8.1 0.00018 43.0 4.0 41 90-135 32-73 (408)
144 TIGR00233 trpS tryptophanyl-tR 61.4 17 0.00037 39.2 6.2 39 92-135 3-41 (328)
145 TIGR00440 glnS glutaminyl-tRNA 60.8 16 0.00035 41.8 6.1 58 580-637 235-310 (522)
146 PLN02886 aminoacyl-tRNA ligase 60.6 11 0.00023 41.6 4.4 30 100-133 54-83 (389)
147 PLN02886 aminoacyl-tRNA ligase 58.9 12 0.00026 41.2 4.5 17 177-193 102-118 (389)
148 COG0008 GlnS Glutamyl- and glu 57.6 11 0.00023 42.7 3.9 58 572-630 236-298 (472)
149 PTZ00402 glutamyl-tRNA synthet 57.5 35 0.00076 39.7 8.0 67 572-639 275-359 (601)
150 PF00579 tRNA-synt_1b: tRNA sy 55.8 6.4 0.00014 41.6 1.7 42 89-135 3-44 (292)
151 cd07375 Anticodon_Ia_like Anti 54.6 19 0.00042 31.3 4.4 45 627-671 2-46 (117)
152 PTZ00437 glutaminyl-tRNA synth 51.7 16 0.00035 42.1 4.1 62 580-641 280-359 (574)
153 cd07956 Anticodon_Ia_Arg Antic 51.5 14 0.0003 35.1 3.1 29 603-631 2-30 (156)
154 KOG2623 Tyrosyl-tRNA synthetas 51.2 13 0.00027 40.6 2.9 76 538-615 226-313 (467)
155 PRK00927 tryptophanyl-tRNA syn 51.2 11 0.00023 40.8 2.6 31 100-134 9-39 (333)
156 PLN02859 glutamine-tRNA ligase 49.6 34 0.00075 41.0 6.5 64 575-638 488-570 (788)
157 PRK05710 glutamyl-Q tRNA(Asp) 49.5 34 0.00073 36.5 5.9 70 541-617 194-263 (299)
158 cd07958 Anticodon_Ia_Leu_BEm A 47.5 24 0.00052 30.9 3.9 24 624-647 1-24 (117)
159 PRK12283 tryptophanyl-tRNA syn 46.5 35 0.00075 37.8 5.5 29 100-133 10-39 (398)
160 COG0180 TrpS Tryptophanyl-tRNA 45.3 1E+02 0.0022 33.1 8.6 44 91-140 5-49 (314)
161 COG1656 Uncharacterized conser 42.7 62 0.0014 31.2 5.9 17 118-134 17-33 (165)
162 PRK12556 tryptophanyl-tRNA syn 42.0 23 0.0005 38.3 3.3 32 100-133 11-42 (332)
163 COG0162 TyrS Tyrosyl-tRNA synt 41.3 23 0.0005 39.2 3.2 40 91-135 32-72 (401)
164 PTZ00126 tyrosyl-tRNA syntheta 40.8 25 0.00054 38.8 3.4 42 90-135 65-106 (383)
165 cd06545 GH18_3CO4_chitinase Th 37.0 1.1E+02 0.0023 31.5 7.3 103 95-222 29-134 (253)
166 TIGR03838 queuosine_YadB gluta 30.1 53 0.0011 34.5 3.6 82 540-628 186-270 (272)
167 KOG2145 Cytoplasmic tryptophan 29.7 43 0.00093 35.1 2.7 27 89-115 83-109 (397)
168 PF00749 tRNA-synt_1c: tRNA sy 27.9 88 0.0019 33.5 4.9 75 540-618 200-277 (314)
169 PTZ00348 tyrosyl-tRNA syntheta 27.6 60 0.0013 38.6 3.8 38 91-133 32-70 (682)
170 KOG2144 Tyrosyl-tRNA synthetas 27.0 43 0.00094 35.2 2.2 52 538-593 176-229 (360)
171 cd00598 GH18_chitinase-like Th 26.4 3.1E+02 0.0066 26.7 8.3 44 178-221 93-142 (210)
172 PRK12282 tryptophanyl-tRNA syn 26.2 35 0.00075 36.9 1.5 16 100-115 10-25 (333)
173 TIGR03826 YvyF flagellar opero 22.4 53 0.0012 30.8 1.7 33 375-408 60-92 (137)
174 COG4352 RPL13 Ribosomal protei 22.3 1.1E+02 0.0024 27.2 3.6 39 183-223 74-112 (113)
175 cd07959 Anticodon_Ia_Leu_AEc A 21.1 1.7E+02 0.0037 25.5 4.8 22 624-645 1-22 (117)
176 cd02875 GH18_chitobiase Chitob 20.7 3.2E+02 0.0069 29.8 7.7 59 177-235 100-164 (358)
177 cd02872 GH18_chitolectin_chito 20.1 3.4E+02 0.0074 29.3 7.8 43 177-219 100-150 (362)
178 COG3171 Uncharacterized protei 20.0 2.1E+02 0.0047 25.8 4.9 51 182-232 23-74 (119)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-159 Score=1352.09 Aligned_cols=607 Identities=57% Similarity=1.026 Sum_probs=573.8
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|++++.|++..+...++|+|..||||+||.||||||++.++.|+++||+||+||+|+|++||||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 578998 8999999999999999998765425599999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
+|++||.+||+.++++|+++.+++||+|+++||+|++++.+.|++||++||+++||+++++||||++.++|+++|.+|++
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCc
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~ 298 (674)
+|+||+++++|||||+|+|+|||.||+|++..|.++||+|++.+.+.+|+|||||||||+|+|||+|||+|+||++|+|+
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk 241 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGK 241 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-ccCCCCHHHHHHHH
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKKL 377 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-~~~g~~~~~ar~~i 377 (674)
++.+|+. +++|||+.|+|||++||||+|++||+||++||+++++|+||+++++|++|+++++++ +|+|+++++||++|
T Consensus 242 ~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kI 320 (877)
T COG0525 242 EVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKI 320 (877)
T ss_pred EEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHH
Confidence 9999995 799999999999999999999999999999999999999999999999999998885 99999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|++.|++.+.+++.|++|+|+|||++||+++++|||+++..+++.+++++++|+++|+|+.+++++.+|+++++|||
T Consensus 321 v~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWc 400 (877)
T COG0525 321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWC 400 (877)
T ss_pred HHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
||||++||||||+|||.+ ++..+++.+..+...+ ... +....+++++|||||||+|++||++++|||.++ .+|+++
T Consensus 401 ISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~-~~~-~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~f 476 (877)
T COG0525 401 ISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA-AEK-CPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKKF 476 (877)
T ss_pred eeeeeecCcccceEEecC-CCcEEeCCccccchhh-hcc-CchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHhc
Confidence 999999999999999963 5667777664443322 111 222568899999999999999999999999986 899998
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||.|++++|+||||||+++|+++++.+.++.||+.|++||+++|.+|+|||||+||||+|.|++++||+|+|||+|++.+
T Consensus 477 yPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~ 556 (877)
T COG0525 477 YPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLA 556 (877)
T ss_pred CCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh-hHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI-SRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~-~~~~~L~~~~~~~~~ 671 (674)
. ++|++|+++.++.+++|+|||||+.||++.|+++.... .+...+...|+|||+
T Consensus 557 ~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls 612 (877)
T COG0525 557 SPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILS 612 (877)
T ss_pred CCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHH
Confidence 5 99999999999999999999999999999998766641 111444689999997
No 2
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-147 Score=1313.37 Aligned_cols=649 Identities=86% Similarity=1.387 Sum_probs=601.3
Q ss_pred ccccccchhhhhhhhhcccCCCCcccccchhhhhhhhccCCCCCC---CCCCChHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 005849 15 LSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTL---PKTFDFTSEERIYNWWESQGYFKPNFERGSDP 91 (674)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~ 91 (674)
++-+|++++..++-...+ |.|.++....|++.+..+.+++. ++.||+..|++||++|+++++|++..+.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~E~~~~~~W~~~~~f~~~~~~~~~~ 89 (958)
T PLN02943 14 SSIRRLNPLLLSACRRRA----WAPRRAARRFCAAAASENDVFTSPETAKSFDFTSEERIYNWWESQGYFKPNFDRGGDP 89 (958)
T ss_pred hhhcccchhhhhchHHHh----hCCCcccccccchhcCccchhcccccCCCCChhhhHHHHHHHHHCCCcccCcccCCCC
Confidence 344677777777666666 77777787788888788888873 78999933999999999999999987656778
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++||||+||.|||||+++++++|+++||+||+||+|+|++||||||+|+|.+||+.++.+|+++.++++++|++.||
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~ 169 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVW 169 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~ 251 (674)
+|++++.+.|++|+++||+++||+++|+|+||+|.++++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~ 249 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 249 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 252 TLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 252 ~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
.++|++|++.+.+ .+++|||||||||+||+||+|||+++||++|+|+.+.+|++.++++||++++||++++|||+||+|
T Consensus 250 ~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~ 329 (958)
T PLN02943 250 TLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKIS 329 (958)
T ss_pred cEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeC
Confidence 9999999997643 799999999999999999999999999999999999999965899999999999999999999999
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
|+||++||+++++||||+++++|++|++++.+|.| ++|||++|+++|+++|++++.++++|.+|+|||||++|+++
T Consensus 330 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~----~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~ 405 (958)
T PLN02943 330 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 405 (958)
T ss_pred CCCChHHHHHHHHcCCCceeeeCCCceeeccCCcc----HHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEE
Confidence 99999999999999999999999999999876655 99999999999999999999999999999999999999999
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC-cc-cEEEeCChhH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK-EE-EYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~-~~-~~~~~~~~~~ 488 (674)
+++|||++++++++++++++++++++|+|+.+++++.+||++++||||||||+||+|||+|+|++. ++ .++++.+.++
T Consensus 406 ~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~ 485 (958)
T PLN02943 406 VSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEE 485 (958)
T ss_pred eccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHH
Confidence 999999999999999999999889999999999999999999999999999999999999998532 22 3788888888
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~ 568 (674)
+...+...+|.+..+.+++|||||||||++||++++|||...+++|++|||+|++++|+||++||+++|+++++.+.+++
T Consensus 486 ~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~ 565 (958)
T PLN02943 486 ALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTV 565 (958)
T ss_pred HHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCC
Confidence 87776666766667899999999999999999999999986557899999999999999999999999999999999999
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~ 648 (674)
||+++++||+++|.+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.++++++++|||+.+|+++
T Consensus 566 Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~ 645 (958)
T PLN02943 566 PFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQ 645 (958)
T ss_pred ChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999877999999999999999999999999999998
Q ss_pred cCCC--------------CCChhHHHHHHHhHHHHHh
Q 005849 649 NLPS--------------QNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~--------------~~~~~~~~~L~~~~~~~~~ 671 (674)
++.+ ++...+...+...|+|||+
T Consensus 646 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wils 682 (958)
T PLN02943 646 NLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVS 682 (958)
T ss_pred ccccccccccccccccccCCccccccccCHHHHHHHH
Confidence 8743 2221122356788999985
No 3
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.4e-143 Score=1283.71 Aligned_cols=611 Identities=48% Similarity=0.924 Sum_probs=566.4
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ .+|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D 175 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVD 175 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCC
Confidence 4788999 899999999999999998766667889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~-~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|.++++.+ .+.|+++.++++++|++.||+|++++.+.|++++++||+++||+++|+|+|++|.++|+++|.+|
T Consensus 176 ~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 255 (1066)
T PLN02381 176 HAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRL 255 (1066)
T ss_pred CCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHH
Confidence 99999999999877 44688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCceEEEeecCCCcccCC
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD 280 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~ 280 (674)
+++|+||++.++|+|||.|+|+|||+||+|.+.. +..++|+|++.+.+.+++|||||||||+|+
T Consensus 256 ~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~ 335 (1066)
T PLN02381 256 YKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGD 335 (1066)
T ss_pred HHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcc
Confidence 9999999999999999999999999999998866 556788999876556899999999999999
Q ss_pred ceEEeCCCCchhhhccCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccc
Q 005849 281 VALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359 (674)
Q Consensus 281 ~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~ 359 (674)
+||+|||+|++|++|+|+++.+|++ ++.+|||.+. ||++++|||+||+|||||++||+++++|+||+++++|++|+++
T Consensus 336 ~avaV~P~d~ry~~L~G~~~~~Pl~-~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~ 414 (1066)
T PLN02381 336 TAIAIHPDDERYKHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKIN 414 (1066)
T ss_pred cceeeCCCCcchhhhCCCEEECCCC-CCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeC
Confidence 9999999999999999999999995 7899999875 9999999999999999999999999999999999999999999
Q ss_pred cccc-ccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHH---HhCCc
Q 005849 360 EVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV---EKGEL 435 (674)
Q Consensus 360 e~~g-~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i---~~~~~ 435 (674)
+++| .|+|+.+++||++|+++|++.|++++.+++.|++|+||||+++|++++++||||+++++++++++++ .++++
T Consensus 415 ~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i 494 (1066)
T PLN02381 415 SNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKL 494 (1066)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCce
Confidence 9876 8999999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred eEechhHHHHHHHHHhcCCCceeecccCCCcccceeeec--C-------C-cccEEEeCChhHHHHHHhhhc-CCCcceE
Q 005849 436 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--G-------K-EEEYIVARNADEALEKAHQKY-GKNVEIY 504 (674)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~--~-------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 504 (674)
+|+|+.+++++.+||++++||||||||+||+|||+|+|. + . .+.+++..+..++...+...| +....++
T Consensus 495 ~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1066)
T PLN02381 495 EFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELS 574 (1066)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCcccee
Confidence 999999999999999999999999999999999999984 1 0 134666777666655443333 3334699
Q ss_pred ecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC
Q 005849 505 QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG 584 (674)
Q Consensus 505 ~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G 584 (674)
|++||||||||||+||+++++||.+. ++|++|||+|++++|+||+|||+++|+++++.+.++.||++|++||+|+|.+|
T Consensus 575 rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G 653 (1066)
T PLN02381 575 QDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG 653 (1066)
T ss_pred ecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCC
Confidence 99999999999999999999999875 78999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccCH
Q 005849 585 RKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSI 626 (674)
Q Consensus 585 ~KMSKS~gN~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs~ 626 (674)
+|||||+||+|+|.++++ +||+|+|||||++..+ ++|++|+.
T Consensus 654 ~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~ 733 (1066)
T PLN02381 654 RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDI 733 (1066)
T ss_pred CCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccH
Confidence 999999999999999999 7999999999998887 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCh--hHHHHHHHhHHHHHh
Q 005849 627 ERLTANKAFTNKLWNAGKFILQNLPS-QNDI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 627 ~~l~~~~~~~~kl~n~~~f~~~~~~~-~~~~--~~~~~L~~~~~~~~~ 671 (674)
+.+...++|++||||+++|+++++.+ +++. .+...+...|+|||+
T Consensus 734 ~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILs 781 (1066)
T PLN02381 734 LRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILS 781 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHH
Confidence 99999999999999999999988863 4321 223456778999986
No 4
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-143 Score=1276.62 Aligned_cols=600 Identities=60% Similarity=1.074 Sum_probs=564.0
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ .+|++||++|+++++|++..+ .+++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 5 ~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D 83 (874)
T PRK05729 5 LPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83 (874)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 4789999 899999999999999998765 35569999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.+|++.+.++|+++.++++++|++.||+|++++.+.|++|+++||+++||+|+|+|+|++|.++|+++|.+|+
T Consensus 84 ~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 163 (874)
T PRK05729 84 HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLY 163 (874)
T ss_pred ccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..+.++|++|++.+.+.+|+|||||||||+||+||+|||+++||++|+|
T Consensus 164 ~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g 243 (874)
T PRK05729 164 EKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIG 243 (874)
T ss_pred HCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+++.+|++ ++++|||+++||++++|||+||+||+||++||+++++++||+++++|++|++++++|.|+|+++++||++|
T Consensus 244 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i 322 (874)
T PRK05729 244 KTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAI 322 (874)
T ss_pred CEEECCCC-CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|+++|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+..++++.+||++++|||
T Consensus 323 ~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWc 402 (874)
T PRK05729 323 VADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWC 402 (874)
T ss_pred HHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccce
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
||||++||+|||+|++++ +.+.+..+..+. + ....+++++|||||||||++||+++++||.+. .+|++|
T Consensus 403 ISRq~~WG~pIP~~~~~~--~~~~v~~~~~~~-------~-~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~-~~~~~~ 471 (874)
T PRK05729 403 ISRQLWWGHRIPAWYDED--GEVYVGREEPEA-------R-EKALLTQDEDVLDTWFSSALWPFSTLGWPEKT-EDLKRF 471 (874)
T ss_pred eeeecccCCcccEEEeCC--CcEEeCCccccc-------c-cccCeEeCCceecceecCCccHHHHhCCCCCc-HHHHhc
Confidence 999999999999999965 234444332111 0 11358899999999999999999999999764 789999
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||+|++++|+||++||+++|+++++.+.++.||+++++||+++|.+|+|||||+||+|+|.|++++||+|++||||++.+
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~ 551 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALA 551 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~--~~~~~L~~~~~~~~~ 671 (674)
. ++|++|+++.+...++++++|||+.||++.++.++... .+...+...|+|||+
T Consensus 552 ~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~ 608 (874)
T PRK05729 552 SPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILS 608 (874)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHH
Confidence 5 99999999999999999999999999998886554321 123356778999986
No 5
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-144 Score=1191.50 Aligned_cols=611 Identities=55% Similarity=1.008 Sum_probs=578.3
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
.++.|++ .+|+.|+.||++++.|++... ..+..|+++.||||+||.||||||++.++.|+++||+||+||+|+|++|+
T Consensus 42 ~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~ 121 (995)
T KOG0432|consen 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGT 121 (995)
T ss_pred ccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCc
Confidence 3678998 899999999999999998765 34678999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g-~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||+|++||..|||.+..++ +++.+++|++|++++|+|.+++...|.+||++||.++||+|+++|||+...+.|.++|.+
T Consensus 122 DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvr 201 (995)
T KOG0432|consen 122 DHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVR 201 (995)
T ss_pred cccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHH
Confidence 9999999999999998776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCceEEEeecCCCcccC
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFG 279 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~~l~v~Tt~Petl~~ 279 (674)
|++.|+||++.+.|||||.++|++||.||++.+.. |.++.|+|++.+++..|+|+|||||||+|
T Consensus 202 L~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lG 281 (995)
T KOG0432|consen 202 LHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILG 281 (995)
T ss_pred HHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCcccccc
Confidence 99999999999999999999999999999988743 77999999999998999999999999999
Q ss_pred CceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccc
Q 005849 280 DVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359 (674)
Q Consensus 280 ~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~ 359 (674)
++||||||+|+||+++.|+.+.|||+ ++.+|||.|.+||++||||+|+++|+|+++||++++++||+.+++++++|.++
T Consensus 282 DvAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~ 360 (995)
T KOG0432|consen 282 DVAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLN 360 (995)
T ss_pred ceeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCcee
Confidence 99999999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
+.||+|+||++++||++|++.|++.|++...+++.+.+|.|.|||++||+++.+|||++++++.+++++++++|++++.|
T Consensus 361 ~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P 440 (995)
T KOG0432|consen 361 NVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILP 440 (995)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecC-----CcccEEEeCChhHHHHHHhhhcC--CCcceEecCCeeee
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQKYG--KNVEIYQDPDVLDT 512 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dvld~ 512 (674)
+..++.+.+|+++++|||||||.||||+||+|++.. ..+.|+++++++|+++++.+++| ++.++++++|||||
T Consensus 441 ~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDT 520 (995)
T KOG0432|consen 441 EFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDT 520 (995)
T ss_pred hHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHh
Confidence 999999999999999999999999999999999842 24568999999999999999885 66789999999999
Q ss_pred eccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCC
Q 005849 513 WFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 513 Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
||+|++|||+++|||+++ ++|+.+||.+++.+|+||++||+++|+|+++.++|+.||+.|++||+|+|..|+|||||+|
T Consensus 521 WFSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLG 599 (995)
T KOG0432|consen 521 WFSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLG 599 (995)
T ss_pred hhhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhc
Confidence 999999999999999987 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccCHHHHHHHHH
Q 005849 593 NVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSIERLTANKA 634 (674)
Q Consensus 593 N~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~ 634 (674)
|||+|.|+|+ +.|.|+|||.|++... .+|+++|...+.+++.
T Consensus 600 NVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~ 679 (995)
T KOG0432|consen 600 NVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRH 679 (995)
T ss_pred cccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHH
Confidence 9999999998 3499999999999888 9999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-CCCC--hhHHHHHHH-hHHHHHh
Q 005849 635 FTNKLWNAGKFILQNLP-SQND--ISRWEILLA-YKVCVLT 671 (674)
Q Consensus 635 ~~~kl~n~~~f~~~~~~-~~~~--~~~~~~L~~-~~~~~~~ 671 (674)
|+|||||+.||+++.+. +|.+ ..+.+--.. .|+|||+
T Consensus 680 FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIls 720 (995)
T KOG0432|consen 680 FCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILS 720 (995)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHH
Confidence 99999999999998654 3442 112211121 8999986
No 6
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=5.5e-143 Score=1286.87 Aligned_cols=612 Identities=51% Similarity=0.953 Sum_probs=569.7
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCC----CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~----~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
.++.||+ .+|++||++|+++++|++.. +.++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 4688999 89999999999999999852 335678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHH
Q 005849 134 PGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (674)
Q Consensus 134 ~G~D~~Gl~~e~~ve~~~-~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 212 (674)
+||||||+|+|.+||+.+ .+.|+++.++++++|+++||+|++++.+.|+++|++||+++||+++|+|+|++|.+.++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 999999999999999987 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEcccceeccCCCCcccccchhhccCCC----------------CeeEEEEEeecCCCc-eEEEeecCCC
Q 005849 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSD-FLTIATTRPE 275 (674)
Q Consensus 213 f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~kf~~~~~~~-~l~v~Tt~Pe 275 (674)
|.+|+++|+||++.++|+|||.|+|+|||+||+|.+.. +.++|++|++.+.+. +|+|||||||
T Consensus 184 F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPe 263 (995)
T PTZ00419 184 FVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIE 263 (995)
T ss_pred HHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcc
Confidence 99999999999999999999999999999999998876 677899999987655 9999999999
Q ss_pred cccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC
Q 005849 276 TLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 354 (674)
Q Consensus 276 tl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~ 354 (674)
||+||+||+|||++++|++|+|+++.+|+..++.+||++++ ||++++|||+||+|||||++||+++++||||+++++|+
T Consensus 264 Tl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~ 343 (995)
T PTZ00419 264 TMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTL 343 (995)
T ss_pred hhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCC
Confidence 99999999999999999999999999999437999999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCC
Q 005849 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE 434 (674)
Q Consensus 355 ~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~ 434 (674)
+|+|++++|.|.|+.+.|||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++++++
T Consensus 344 ~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~ 423 (995)
T PTZ00419 344 DGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGE 423 (995)
T ss_pred CceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC--------cccEEEeCChhHHHHHHhhhcC---CCcce
Q 005849 435 LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYG---KNVEI 503 (674)
Q Consensus 435 ~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 503 (674)
++|+|+++++++.+||++++||||||||+||+|||+|+|++. .+.+++..+.+++...+...++ ++..+
T Consensus 424 i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (995)
T PTZ00419 424 LKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFEL 503 (995)
T ss_pred eEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCe
Confidence 999999999999999999999999999999999999999652 1235667777776655433332 23569
Q ss_pred EecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCC
Q 005849 504 YQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583 (674)
Q Consensus 504 ~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~ 583 (674)
+|++|||||||||++||+++++||.+. .+|++|||+|++++|+||+|+|+++|+++++.+.++.||++|++||+++|.+
T Consensus 504 ~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~ 582 (995)
T PTZ00419 504 EQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQ 582 (995)
T ss_pred EECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCC
Confidence 999999999999999999999999765 6799999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCccChhhHHh-------------------------------------hhChhHHHHHHhcCCC-CCccccC
Q 005849 584 GRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLS 625 (674)
Q Consensus 584 G~KMSKS~gN~i~~~dll~-------------------------------------~ygaD~lR~~l~~~~~-~~d~~fs 625 (674)
|+|||||+||+|+|.++++ +||+|++||||++... ++|++|+
T Consensus 583 G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~ 662 (995)
T PTZ00419 583 GEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLD 662 (995)
T ss_pred CCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCcccc
Confidence 9999999999999999999 8999999999998776 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChh--------HHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDIS--------RWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~--------~~~~L~~~~~~~~~ 671 (674)
.+.+...+++++||||+++|+++++.++.... +...+...|+|||+
T Consensus 663 ~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls 716 (995)
T PTZ00419 663 INRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILH 716 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHH
Confidence 99999999999999999999999887643211 12456678999986
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5.2e-142 Score=1265.96 Aligned_cols=607 Identities=58% Similarity=1.032 Sum_probs=572.0
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++||||
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 578999 8999999999999999998766678899999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
||+|||.+||+.+..+|+++.++++|+|+++|++|++++.+.+++++++||+++||+++|+|+|++|.++|+++|.+|++
T Consensus 82 ~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 161 (861)
T TIGR00422 82 AGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161 (861)
T ss_pred CCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
+|+||++.++|+|||.|+|+|||+||+|++..++++|++|++.+.+ .+|+|||||||||+||+||+|||++++|++|+|
T Consensus 162 ~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g 241 (861)
T TIGR00422 162 KGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIG 241 (861)
T ss_pred CCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcC
Confidence 9999999999999999999999999999999999999999998754 899999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+++.+|++ ++++||++++||++++|||+||+||+||++||+++++||||+++++|++|++++++|.|+|++++|||++|
T Consensus 242 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i 320 (861)
T TIGR00422 242 KKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKI 320 (861)
T ss_pred CEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHH
Confidence 99999996 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
+++|+++|++++.+++.|.+|+|+|||+++++++++||||+++++++++++++++++++|+|++.++++.+||++++|||
T Consensus 321 ~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ 400 (861)
T TIGR00422 321 VEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWC 400 (861)
T ss_pred HHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccce
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~ 537 (674)
|||||+||+|||+|+|+. ++...++.+..++...+ .++....+.|++|||||||||++||+++++||.++ .+|++|
T Consensus 401 ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~~ 476 (861)
T TIGR00422 401 ISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKKF 476 (861)
T ss_pred eeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccchHHHHHhCCCCCh-HHHhhc
Confidence 999999999999999975 45566666666655433 24444579999999999999999999999999866 789999
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
||+|++++|+||++||+++|+++++++.++.||+++++||+++|.+|+|||||+||+|+|.+++++||+|++||||++..
T Consensus 477 ~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~ 556 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLV 556 (861)
T ss_pred CCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-hhHHHHHHHhHHHHHh
Q 005849 618 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND-ISRWEILLAYKVCVLT 671 (674)
Q Consensus 618 ~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~-~~~~~~L~~~~~~~~~ 671 (674)
+ ++|++|+++.+.+.++++++|||+.+|+..++.+++. ......+...|+|||+
T Consensus 557 ~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~ 612 (861)
T TIGR00422 557 TPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILS 612 (861)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHH
Confidence 8 9999999999999999999999999999887765421 1112345677999885
No 8
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-141 Score=1218.47 Aligned_cols=609 Identities=33% Similarity=0.545 Sum_probs=560.3
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCC---CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNFE---RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~---~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
|...-|..+|+ ++|++++++|+++++|++..+ ++++.|++++||||+||.+|||||+|.+++|++.||+.|+||+|
T Consensus 10 p~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v 89 (933)
T COG0060 10 PKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDV 89 (933)
T ss_pred ccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcC
Confidence 33444788898 899999999999999998763 56789999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
.+++||||||||||.+|++.+...+...++++.++|.+.|++++.++.+.++++++|||++.||+++|.|||++|.+.++
T Consensus 90 ~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~ 169 (933)
T COG0060 90 PYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVW 169 (933)
T ss_pred CCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHH
Confidence 99999999999999999988865334557789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecC----CCceEEEeecCCCcccCCceEEeC
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRPETLFGDVALAVN 286 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~----~~~~l~v~Tt~Petl~~~~av~v~ 286 (674)
++|.+|+++|+||++.+||+|||+|+|+||++||+|.+..++++|++|++++ .+.+++||||||||||+|.||+||
T Consensus 170 ~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~ 249 (933)
T COG0060 170 WAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVH 249 (933)
T ss_pred HHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeC
Confidence 9999999999999999999999999999999999999999999999999974 589999999999999999999999
Q ss_pred CCCch----------------------------h--------hhccCcEEecCCCC---CceeeeeecccccccCCCcce
Q 005849 287 PQDEH----------------------------Y--------SQFIGMMAIVPMTY---GRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 287 p~~~~----------------------------y--------~~l~G~~~~~P~~~---~~~vpii~~~~V~~~~GTG~v 327 (674)
|+.++ | ++|.|.++.|||.+ .+.+||+.++||+.+.|||+|
T Consensus 250 pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~V 329 (933)
T COG0060 250 PDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLV 329 (933)
T ss_pred CCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccce
Confidence 99752 1 36889999999965 699999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhC-CCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 328 KISPGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~-l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
|++||||++||.+|+++| ||+++++|++|+++++.+.|.|+.++||++.|++.|+++|.+++.+.+.|+|||||||++|
T Consensus 330 HtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktP 409 (933)
T COG0060 330 HTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTP 409 (933)
T ss_pred ecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCe
Confidence 999999999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+++|+++|||++++++++++++.+. +++|+|+..+++|.+||++.+||||||||+||+|||+|+|++ ++..++. .
T Consensus 410 lIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~-~g~~~~~--~ 484 (933)
T COG0060 410 LIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKE-TGEILVI--T 484 (933)
T ss_pred eEEeecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECC-CCCeecc--H
Confidence 9999999999999999999998886 799999999999999999999999999999999999999976 3444443 3
Q ss_pred hHHHHHHhh--------------------hc-CCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEE
Q 005849 487 DEALEKAHQ--------------------KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545 (674)
Q Consensus 487 ~~~~~~~~~--------------------~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~ 545 (674)
.|+.+.... .+ .++..++|++||||||||||+++++..+ |.++ ..|..++ +|++++
T Consensus 485 ~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lE 561 (933)
T COG0060 485 EELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLE 561 (933)
T ss_pred HHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEE
Confidence 333222111 01 2234899999999999999999999887 5543 3344444 599999
Q ss_pred eehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccC
Q 005849 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLS 625 (674)
Q Consensus 546 G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs 625 (674)
|+||+|+||+++++++.++.++.||+++++|||++|.+|+|||||+||+|+|.|++++||||+||||++++.+..|+.||
T Consensus 562 GsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s 641 (933)
T COG0060 562 GSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFS 641 (933)
T ss_pred eccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCchhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++.++..++.+++|||+++|+++||++|++. +..++|...|+|||+
T Consensus 642 ~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~ 690 (933)
T COG0060 642 DEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILS 690 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHH
Confidence 9999999999999999999999999999975 567799999999996
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-140 Score=1255.70 Aligned_cols=610 Identities=29% Similarity=0.513 Sum_probs=560.9
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
.++.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 3688999 899999999999999998654 4578899999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHH
Q 005849 136 TDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (674)
Q Consensus 136 ~D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (674)
|||||+|||.+|++.+...+. ..+++++++|+++|++|+.++.+.+++++++||+++||+++|+|+||.|.++++|+|.
T Consensus 87 wD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~ 166 (975)
T PRK06039 87 WDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALK 166 (975)
T ss_pred cCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987633322 3457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCceEEcccceeccCCCCcccccchhh--ccCCCCeeEEEEEeecC-CCceEEEeecCCCcccCCceEEeCCCC--
Q 005849 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD-- 289 (674)
Q Consensus 215 ~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~kf~~~~-~~~~l~v~Tt~Petl~~~~av~v~p~~-- 289 (674)
+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+ .+.+++|||||||||+||+||+|||++
T Consensus 167 ~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y 246 (975)
T PRK06039 167 QLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDY 246 (975)
T ss_pred HHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCce
Confidence 9999999999999999999999999999999 99999999999999974 678999999999999999999999998
Q ss_pred -------chh-----------------------hhccCcEEecCCCC--C--ceeeeeecccccccCCCcceeeCCCCCh
Q 005849 290 -------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYVDKEFGTGVLKISPGHDH 335 (674)
Q Consensus 290 -------~~y-----------------------~~l~G~~~~~P~~~--~--~~vpii~~~~V~~~~GTG~v~~~P~h~~ 335 (674)
++| ++|+|+++.+|++. + +.+||++++||++++|||+||+|||||+
T Consensus 247 ~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~ 326 (975)
T PRK06039 247 VKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGE 326 (975)
T ss_pred EEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCCh
Confidence 465 67999999999963 3 5799999999999999999999999999
Q ss_pred hhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccc
Q 005849 336 NDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415 (674)
Q Consensus 336 ~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qw 415 (674)
+||++++++|||+++++|++|+|++++|.|+|+.++|||++|+++|+++|++++.+++.|++|+|||||+++++++++||
T Consensus 327 ~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qW 406 (975)
T PRK06039 327 DDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESW 406 (975)
T ss_pred HHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCceEechhHHH-HHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHh
Q 005849 416 FVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH 494 (674)
Q Consensus 416 fi~~~~~~~~~~~~i~~~~~~~~P~~~~~-~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (674)
||++++++++++++++ +++|+|+..++ ++.+||++++||||||||+||+|||+|+|++ ++.+++..++.++.....
T Consensus 407 Fi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~g~~~v~~~~~el~~~~g 483 (975)
T PRK06039 407 FIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-CGRIDVIGSIEELEELFG 483 (975)
T ss_pred eEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-CCeEEEeccHHHHHHHhC
Confidence 9999999999999885 59999999998 9999999999999999999999999999976 456888888887754432
Q ss_pred h-----------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 495 Q-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 495 ~-----------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
. +|+++..+.|++|||||||||++||+++++||.++++.|+++||+|++++|+||++||+++|
T Consensus 484 ~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l 563 (975)
T PRK06039 484 EDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTL 563 (975)
T ss_pred CCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHH
Confidence 1 12224568999999999999999999999999877678999999999999999999999999
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHH-HHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER-LTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~-l~~~~~~ 635 (674)
++++.++.++.||+++++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++ ++|++|+++. ++.++++
T Consensus 564 ~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~ 643 (975)
T PRK06039 564 LALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKF 643 (975)
T ss_pred HHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 9999999999 6678999
Q ss_pred HHHHHHHHHHHH--hcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 636 TNKLWNAGKFIL--QNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 636 ~~kl~n~~~f~~--~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+++|||+++|+. .++.+++.. .+...+...|+|+|+
T Consensus 644 l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils 684 (975)
T PRK06039 644 LLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILS 684 (975)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHH
Confidence 999999999976 355554321 123456778999885
No 10
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-140 Score=1257.45 Aligned_cols=603 Identities=51% Similarity=0.949 Sum_probs=559.6
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
++.||+ .+|++||++|+++++|+... +.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 16 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D 95 (1052)
T PRK14900 16 AKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTD 95 (1052)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Confidence 788999 89999999999999999863 3457789999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~-~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|.++++.+. +.|+++.++++++|++.||+|++++.+.|+++|++||+++||+++|+|+||+|.++++++|.+|
T Consensus 96 ~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 175 (1052)
T PRK14900 96 HAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRL 175 (1052)
T ss_pred ccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999998773 4688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccC-CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l 295 (674)
+++|+||++.++|+|||.|+|+|||+||+|.+ ..+.++||+|++.+.+.+|+|||||||||+||+||+|||++++|++|
T Consensus 176 ~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L 255 (1052)
T PRK14900 176 HEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMAL 255 (1052)
T ss_pred HHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHh
Confidence 99999999999999999999999999999998 78889999999988778999999999999999999999999999999
Q ss_pred cCcEEecCCCCCceeeeeecc-cccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHH
Q 005849 296 IGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEAR 374 (674)
Q Consensus 296 ~G~~~~~P~~~~~~vpii~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar 374 (674)
+|+++.+|++ ++.+|||.+. +|++++|||+||+||+||++||+++++++||+++++|++|++++++|.|.|+.++|||
T Consensus 256 ~G~~~~~Pl~-~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear 334 (1052)
T PRK14900 256 HGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEAR 334 (1052)
T ss_pred cCCEEECCCC-CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHH
Confidence 9999999995 8999999764 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCC
Q 005849 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 454 (674)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~ 454 (674)
+.|+++|+++|++++.+++.|++|+||||+++|++++++||||+++++++++++++++++++|+|++.++++.+||++++
T Consensus 335 ~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~ 414 (1052)
T PRK14900 335 KEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIH 414 (1052)
T ss_pred HHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhh
Q 005849 455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDF 534 (674)
Q Consensus 455 DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f 534 (674)
||||||||+||+|||+|+|++ +.++++....+.. ..|+ +..+.+++|||||||||++||+++++||.+. .+|
T Consensus 415 DW~ISRqr~WG~PIP~w~~~~--~~~~v~~~~~~~~----~~~~-~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~-~~~ 486 (1052)
T PRK14900 415 DWCISRQLWWGHQIPAWYCPD--GHVTVARETPEAC----STCG-KAELRQDEDVLDTWFSSGLWPFSTMGWPEQT-DTL 486 (1052)
T ss_pred cceEEeecCCCceeCeEEcCC--CcEEecccccccc----cccC-ccceecCCceEEEEEcCChHHHHHHcCCCch-HHH
Confidence 999999999999999999964 3466655432111 1222 2358899999999999999999999999864 679
Q ss_pred hhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHh
Q 005849 535 KKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTIS 614 (674)
Q Consensus 535 ~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~ 614 (674)
++|||+|++++|+||++||+++|+++++.+.++.||++|++||+++|.+|+|||||+||+|+|.|++++||+|++||||+
T Consensus 487 ~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~ 566 (1052)
T PRK14900 487 RTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLA 566 (1052)
T ss_pred HhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 615 LGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 615 ~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+..+ ++|++|+++.+...++++++|||+.||++.++.++... ..-..+...|+|||+
T Consensus 567 ~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils 627 (1052)
T PRK14900 567 ALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILA 627 (1052)
T ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHH
Confidence 8776 99999999999889999999999999998877665321 111235667889875
No 11
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=3.1e-139 Score=1249.58 Aligned_cols=609 Identities=22% Similarity=0.395 Sum_probs=549.3
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
++.||+ ++|++|+++|+++++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++||
T Consensus 69 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~Gw 148 (1205)
T PTZ00427 69 SENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGW 148 (1205)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCcc
Confidence 778999 899999999999999999764 35677999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||||+|||.++|+.+...+. ...++++++|.+.|++|+.++.+.+++++++||+++||+++|+|+|+.|.+.++++|.+
T Consensus 149 D~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~ 228 (1205)
T PTZ00427 149 DCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSE 228 (1205)
T ss_pred CCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999987733222 23368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecCC------------------------------
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR------------------------------ 263 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~------------------------------ 263 (674)
|+++|+||++.++|+|||.|+|+||++|| +|++..++++|++|++.+.
T Consensus 229 L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~ 308 (1205)
T PTZ00427 229 LYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRE 308 (1205)
T ss_pred HHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccc
Confidence 99999999999999999999999999999 7999999999999988641
Q ss_pred -----------------CceEEEeecCCCcccCCceEEeCCCCc--hh--------------------------------
Q 005849 264 -----------------SDFLTIATTRPETLFGDVALAVNPQDE--HY-------------------------------- 292 (674)
Q Consensus 264 -----------------~~~l~v~Tt~Petl~~~~av~v~p~~~--~y-------------------------------- 292 (674)
+.+++|||||||||+||+||||||+++ +|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v 388 (1205)
T PTZ00427 309 NSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKI 388 (1205)
T ss_pred cccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEE
Confidence 368999999999999999999999864 11
Q ss_pred ------hhccCcEEecCCC--------CCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCC--C----eeeec
Q 005849 293 ------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----ILNVM 352 (674)
Q Consensus 293 ------~~l~G~~~~~P~~--------~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l--~----~~~~~ 352 (674)
++|+|.+|.+|+. .++.+||++++||++++|||+||+|||||++||+++++||| | +++++
T Consensus 389 ~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~v 468 (1205)
T PTZ00427 389 VNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPL 468 (1205)
T ss_pred EEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccccccc
Confidence 2456788887762 26789999999999999999999999999999999999999 2 78999
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHh
Q 005849 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432 (674)
Q Consensus 353 ~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~ 432 (674)
|++|+|++++|.|+|+.++|||+.|+++|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++
T Consensus 469 d~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~-- 546 (1205)
T PTZ00427 469 DANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNN-- 546 (1205)
T ss_pred CCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCceEechhH-HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhh--------h-------
Q 005849 433 GELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ--------K------- 496 (674)
Q Consensus 433 ~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------- 496 (674)
++++|+|+++ +++|.+||++++||||||||+||+|||+|+|++ ++..++..+++++.+.... .
T Consensus 547 ~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~ 625 (1205)
T PTZ00427 547 ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELSGVKNINDLHRHFIDHIEI 625 (1205)
T ss_pred CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHhccccchhhcccccChhhc
Confidence 4799999999 699999999999999999999999999999975 5567778888776543320 1
Q ss_pred ---cCC-CcceEecCCeeeeeccCCccchhccCCCCC-ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcc
Q 005849 497 ---YGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFS 571 (674)
Q Consensus 497 ---~~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~-~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~ 571 (674)
++. ...++|++||||||||||+||+++++||.+ ++++|+++||+|++++|+||+|+|+++|++++.+++++.||+
T Consensus 626 ~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK 705 (1205)
T PTZ00427 626 KNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFK 705 (1205)
T ss_pred cCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcc
Confidence 111 124899999999999999999999999986 458899999999999999999999999999999999999999
Q ss_pred eeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC--CCccccCHHHHH-HHHHHHHHHHHHHHHHHh
Q 005849 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSIERLT-ANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~--~~d~~fs~~~l~-~~~~~~~kl~n~~~f~~~ 648 (674)
+|++||+++|.+|+|||||+||+|+|.+++++||+|+|||||++... .+|++|+++.+. ..+++++++||+++|+.+
T Consensus 706 ~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~ 785 (1205)
T PTZ00427 706 NLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQ 785 (1205)
T ss_pred eeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998644 699999999986 489999999999999998
Q ss_pred cCCCCC--------Ch--hHHHHHHHhHHHHHh
Q 005849 649 NLPSQN--------DI--SRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~~~--------~~--~~~~~L~~~~~~~~~ 671 (674)
++.++. .. .....+...|+|||+
T Consensus 786 ~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs 818 (1205)
T PTZ00427 786 EVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFS 818 (1205)
T ss_pred ccccccccccccCCcCcccccccCCHHHHHHHH
Confidence 876422 10 012345678999986
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.8e-137 Score=1237.56 Aligned_cols=607 Identities=26% Similarity=0.437 Sum_probs=551.6
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.+.||+ ++|++|+++|+++++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++|
T Consensus 4 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 4 EGKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 3567899 899999999999999998654 3567899999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHcCCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHH
Q 005849 136 TDHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (674)
Q Consensus 136 ~D~~Gl~~e~~ve~~~~~~g~~----~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 211 (674)
|||||+|||.++++.+ |++ ..++++++|.+.|++|+.++.+.+++++++||+++||+++|.|+|++|.+.++|
T Consensus 84 wD~hGlPiE~~vek~l---gi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 84 WDCHGLPVEYEIDKKL---GIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred cCCCCcHHHHHHHHHc---CCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 9999999999988766 543 335899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecCC--CceEEEeecCCCcccCCceEEeCC
Q 005849 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNP 287 (674)
Q Consensus 212 ~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~--~~~l~v~Tt~Petl~~~~av~v~p 287 (674)
+|.+|+++|+||++.++|+|||.|+|+||++|+ +|++..++++|++|++.++ +.+++|||||||||+||+||+|||
T Consensus 161 ~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP 240 (1159)
T PLN02882 161 VFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNP 240 (1159)
T ss_pred HHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECC
Confidence 999999999999999999999999999999888 7999999999999999774 379999999999999999999999
Q ss_pred CCc------------------hh-------------------------------hhccCcEEecCCC-----CCceeeee
Q 005849 288 QDE------------------HY-------------------------------SQFIGMMAIVPMT-----YGRHVPII 313 (674)
Q Consensus 288 ~~~------------------~y-------------------------------~~l~G~~~~~P~~-----~~~~vpii 313 (674)
+++ ++ ++|+|+++.+|+- .++.+||+
T Consensus 241 ~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi 320 (1159)
T PLN02882 241 NFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVV 320 (1159)
T ss_pred CCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEE
Confidence 976 22 1688999987762 14689999
Q ss_pred ecccccccCCCcceeeCCCCChhhHHHHHHhCC-----CeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcc
Q 005849 314 SDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAV 388 (674)
Q Consensus 314 ~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~ 388 (674)
+++||++++|||+||+|||||++||++|+++|| |+++++|++|+|++++|.|+|+.++|||+.|+++|+++|.++
T Consensus 321 ~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~ 400 (1159)
T PLN02882 321 ADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLV 400 (1159)
T ss_pred ccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCcc
Confidence 999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhH-HHHHHHHHhcCCCceeecccCCCcc
Q 005849 389 KKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHR 467 (674)
Q Consensus 389 ~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~p 467 (674)
+.+++.|+||+|||||+|+++++++||||+++++++++++++ ++++|+|++. ++++.+||++++||||||||+||+|
T Consensus 401 ~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtP 478 (1159)
T PLN02882 401 KSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN--KQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTP 478 (1159)
T ss_pred ceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh--CCcEEECCcchhhHHHHHHhcCcccceeeccccCCc
Confidence 999999999999999999999999999999999999999976 4799999999 5899999999999999999999999
Q ss_pred cceeeecCCcccEEEeCChhHHHHHHhh-----------------hcCC-CcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 468 IPVWYIVGKEEEYIVARNADEALEKAHQ-----------------KYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 468 iP~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
||+|+|++ ++..++..+++++.+.... .++. ...++|++||||+|||||+||+++.+||.+
T Consensus 479 IPvw~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e 557 (1159)
T PLN02882 479 LPIWISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFE 557 (1159)
T ss_pred cceEEeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCccc
Confidence 99999976 4557777888776654321 1111 136899999999999999999999999987
Q ss_pred ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHH
Q 005849 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADAL 609 (674)
Q Consensus 530 ~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~l 609 (674)
+++.|+++||+|++++|+||+|+|++++++++.++.++.||+++++||++++.+|+|||||+||+|+|.+++++||+|+|
T Consensus 558 ~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaL 637 (1159)
T PLN02882 558 NKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADAL 637 (1159)
T ss_pred ChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC--CCccccCHHHHHH-HHHHHHHHHHHHHHHHhcCCC--------CCChh--HH-HHHHHhHHHHHh
Q 005849 610 RFTISLGTA--GQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPS--------QNDIS--RW-EILLAYKVCVLT 671 (674)
Q Consensus 610 R~~l~~~~~--~~d~~fs~~~l~~-~~~~~~kl~n~~~f~~~~~~~--------~~~~~--~~-~~L~~~~~~~~~ 671 (674)
||||++.++ .+|++|+.+.+.. .+++++++||+++|+++++.+ +.+.. .+ ..+...|+|||+
T Consensus 638 R~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls 713 (1159)
T PLN02882 638 RLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINS 713 (1159)
T ss_pred HHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHH
Confidence 999998765 6889999999887 467999999999999987744 33311 11 234577999986
No 13
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-136 Score=1212.44 Aligned_cols=605 Identities=32% Similarity=0.522 Sum_probs=549.6
Q ss_pred CCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 54 NNKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 54 ~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
.|...-|..+|+ ++|++||++|+++++|++.. +.++++|+|++||||+||.|||||+++++++|+++||+||+|++|
T Consensus 10 lp~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v 89 (912)
T PRK05743 10 LPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDA 89 (912)
T ss_pred CCCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcc
Confidence 344455677998 89999999999999999753 345778999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
+|++||||||+|||.++++.+ |.+..++++++|.+.|++|++++.+.++++|++||+++||+++|+|+||.|.++++
T Consensus 90 ~~~~G~D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~ 166 (912)
T PRK05743 90 PYVPGWDCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANII 166 (912)
T ss_pred cCCCCcCCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHH
Confidence 999999999999999998765 56667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCC-------CceEEEeecCCCcccCCceE
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIATTRPETLFGDVAL 283 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~-------~~~l~v~Tt~Petl~~~~av 283 (674)
++|.+|+++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+. +.+++|||||||||+||+||
T Consensus 167 ~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~ai 246 (912)
T PRK05743 167 RALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAI 246 (912)
T ss_pred HHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEE
Confidence 99999999999999999999999999999999999999999999999999763 47899999999999999999
Q ss_pred EeCCCCc---------hh---------------------------hhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 284 AVNPQDE---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 284 ~v~p~~~---------~y---------------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
+|||+++ +| ++|+|+++.||++ ++++||++++||++++|||+|
T Consensus 247 av~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~~~V~~~~GTG~V 325 (912)
T PRK05743 247 AVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILGDHVTLDAGTGLV 325 (912)
T ss_pred EECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCCCccCCCCCcCeE
Confidence 9999984 55 4689999999995 789999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
|+||+||++||++++++|||+++++|++|++++++|.|+|+.++||+++|+++|+++|.+++.+++.|++|+|||||++|
T Consensus 326 h~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pv 405 (912)
T PRK05743 326 HTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPV 405 (912)
T ss_pred EeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccchH--HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCC
Q 005849 408 EPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 408 ~~~~~~qwfi~~~~--~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++ ++..++..+
T Consensus 406 i~r~~~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~g~~~~~~~ 482 (912)
T PRK05743 406 IFRATPQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKE-TGELHPTPE 482 (912)
T ss_pred EEEecCcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECC-CCcEeecHH
Confidence 99999999999998 9999999997 599999999999999999999999999999999999999975 344444222
Q ss_pred hhH----HHHHHhh----------hcC-CCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhh
Q 005849 486 ADE----ALEKAHQ----------KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL 550 (674)
Q Consensus 486 ~~~----~~~~~~~----------~~~-~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii 550 (674)
... ..++... -++ +...+.+++||||||||||+++++..++. . +++||+|++++|+||+
T Consensus 483 ~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~----~--~~~~P~Dl~~~G~Di~ 556 (912)
T PRK05743 483 LIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQR----P--ELGYPADLYLEGSDQH 556 (912)
T ss_pred HHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCc----c--ccCCCceEEEeccccc
Confidence 111 1111100 011 13468999999999999999998877631 1 2689999999999999
Q ss_pred hhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHH
Q 005849 551 FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLT 630 (674)
Q Consensus 551 ~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~ 630 (674)
|+|++++++.++++.+..||++|++||+++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++|+.+.+.
T Consensus 557 r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~~s~~~l~ 636 (912)
T PRK05743 557 RGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVRISDEILK 636 (912)
T ss_pred chHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCeeecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 631 ANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 631 ~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++++.+++|||+++|+++|+.++++. .+...|...|+|+|+
T Consensus 637 ~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~ 680 (912)
T PRK05743 637 QVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALH 680 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHH
Confidence 99999999999999999999886632 224567788999985
No 14
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-135 Score=1212.06 Aligned_cols=607 Identities=27% Similarity=0.438 Sum_probs=548.9
Q ss_pred CCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCe
Q 005849 54 NNKDTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (674)
Q Consensus 54 ~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V 130 (674)
.|...-|..+|+ ++|++||++|+++++|++..+ .++++|+|++||||+||.||||||+|++++|+++||+||+||+|
T Consensus 15 lp~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v 94 (961)
T PRK13804 15 LPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDA 94 (961)
T ss_pred CCCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 344445677898 899999999999999998653 45678999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 131 ~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
+|++||||||||||.++++.+..+|+.++++++++|.+.|++|+.++++.++++|++||+++||+++|.|+||.|+++++
T Consensus 95 ~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~ 174 (961)
T PRK13804 95 NYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIA 174 (961)
T ss_pred cCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHH
Confidence 99999999999999999988877788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCC------CceEEEeecCCCcccCCceEE
Q 005849 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALA 284 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~ 284 (674)
++|.+|+++|+||++.+||+|||.|+|+|||+||+|.+..++++||+|++.+. +.+++|||||||||+||+||+
T Consensus 175 ~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aia 254 (961)
T PRK13804 175 REFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAIS 254 (961)
T ss_pred HHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEE
Confidence 99999999999999999999999999999999999999999999999999652 478999999999999999999
Q ss_pred eCCCCc-------------------h-------------------hh--------hccCcEEecCCCCCc-----eeeee
Q 005849 285 VNPQDE-------------------H-------------------YS--------QFIGMMAIVPMTYGR-----HVPII 313 (674)
Q Consensus 285 v~p~~~-------------------~-------------------y~--------~l~G~~~~~P~~~~~-----~vpii 313 (674)
|||+++ + |+ +|+|+++.||++ ++ .+||+
T Consensus 255 v~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~~~~~pvi 333 (961)
T PRK13804 255 YSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD-GLDGYEFEVPVL 333 (961)
T ss_pred ECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC-CcccccceeEEE
Confidence 999973 3 23 689999999996 56 89999
Q ss_pred ecccccccCCCcceeeCCCCChhhHHHHHHhCC-CeeeeccCCCcccccccc--------cCCCCHHHHHHHHHHHHHHc
Q 005849 314 SDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFEARKKLWSDLEET 384 (674)
Q Consensus 314 ~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-~~~~~~~~~G~~~e~~g~--------~~g~~~~~ar~~i~~~L~~~ 384 (674)
+++||++++|||+||+||+||++||++++++|| |+++++|++|++++++|. |+|+.+.|||+.|+++|+++
T Consensus 334 ~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~ 413 (961)
T PRK13804 334 DGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEA 413 (961)
T ss_pred ecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhC
Confidence 999999999999999999999999999999999 999999999999998887 89999999999999999999
Q ss_pred CCcccccccccccccccCCCCcccceeeccccccchH-------HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCce
Q 005849 385 GLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (674)
Q Consensus 385 g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~-------~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ 457 (674)
|.+++.+++.|++|+|||||+||++++++||||++++ ++++++++++ +++|+|+..++++.+||++++|||
T Consensus 414 g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWc 491 (961)
T PRK13804 414 GLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWV 491 (961)
T ss_pred CCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccce
Confidence 9999999999999999999999999999999999998 9999999996 699999999999999999999999
Q ss_pred eecccCCCcccceeeecCCcccEEEeCCh----hHHHHHHh--------------hhcCCCcceEecCCeeeeeccCCcc
Q 005849 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNA----DEALEKAH--------------QKYGKNVEIYQDPDVLDTWFSSALW 519 (674)
Q Consensus 458 iSRq~~WG~piP~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~dvld~Wfds~~~ 519 (674)
|||||+||+|||+|+|++ +..++.... .+...+.. ..+++...++|++||||||||||++
T Consensus 492 ISRQR~WG~PIP~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s 569 (961)
T PRK13804 492 ISRQRAWGVPIPIFVAED--GEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGST 569 (961)
T ss_pred eeeeccCCceeeEEEcCC--CCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCC
Confidence 999999999999999954 232222111 11111110 0111234699999999999999987
Q ss_pred chhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 520 PFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 520 ~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+...... +.+| .||+|++++|+||+|+|++++++++.++.++.||++|++||+++|.+|+|||||+||+|+|.+
T Consensus 570 ~~~~~~~----~~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ 643 (961)
T PRK13804 570 HAFVLED----RPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQD 643 (961)
T ss_pred ccccccC----Cccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHH
Confidence 7654321 2334 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 600 TIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 600 ll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
++++||+|++|||+++.++++|++|+.+.+..+++.+++|||++||+++|+.++++. .+...+...|+|+|+
T Consensus 644 ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~ 718 (961)
T PRK13804 644 VIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLH 718 (961)
T ss_pred HHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHH
Confidence 999999999999999877799999999999999999999999999999999887643 234567788999985
No 15
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.1e-134 Score=1199.86 Aligned_cols=596 Identities=30% Similarity=0.491 Sum_probs=535.8
Q ss_pred Ch-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 005849 64 DF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (674)
Q Consensus 64 ~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl 141 (674)
++ ++|++||++|+++++|++..+ ..+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 45 789999999999999998654 2456799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCc
Q 005849 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (674)
Q Consensus 142 ~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGl 221 (674)
|||.++++.+.. .+.+++++++|+++|++|++++.+.|+++|++||++.||+++|+|+||+|.+.++++|.+|+++|+
T Consensus 84 pie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~Gl 161 (974)
T PLN02843 84 PIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGY 161 (974)
T ss_pred HHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 999998877632 155678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccceeccCCCCcccccchhhccC-CCCeeEEEEEeecCC-------------CceEEEeecCCCcccCCceEEeCC
Q 005849 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR-------------SDFLTIATTRPETLFGDVALAVNP 287 (674)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~kf~~~~~-------------~~~l~v~Tt~Petl~~~~av~v~p 287 (674)
||++.+||+|||.|+|+|||+||+|.+ ..++++||+|++.+. +.+++|||||||||+||+||+|||
T Consensus 162 Iyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP 241 (974)
T PLN02843 162 IYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVND 241 (974)
T ss_pred EEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECC
Confidence 999999999999999999999999997 579999999999753 248999999999999999999999
Q ss_pred CCc-------------h-----------------------------------------------hhhccCcEEecCCCCC
Q 005849 288 QDE-------------H-----------------------------------------------YSQFIGMMAIVPMTYG 307 (674)
Q Consensus 288 ~~~-------------~-----------------------------------------------y~~l~G~~~~~P~~~~ 307 (674)
+++ | +++|+|+++.||+. +
T Consensus 242 ~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~ 320 (974)
T PLN02843 242 KLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY-N 320 (974)
T ss_pred CCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC-C
Confidence 954 1 26799999999995 7
Q ss_pred ceeeeee-cccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHH-HHHHHHHHHHHHcC
Q 005849 308 RHVPIIS-DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEETG 385 (674)
Q Consensus 308 ~~vpii~-~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~-~ar~~i~~~L~~~g 385 (674)
+++||+. ++||++++|||+||+|||||++||+++++||||+++++|++|++++++|.|+|+.+. |||+.|+++|+++|
T Consensus 321 ~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g 400 (974)
T PLN02843 321 RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAG 400 (974)
T ss_pred CceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCC
Confidence 8999975 899999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred CcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCC
Q 005849 386 LAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWG 465 (674)
Q Consensus 386 ~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG 465 (674)
.+++.+++.|+|||||||++||++|+++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||
T Consensus 401 ~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG 478 (974)
T PLN02843 401 SLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTWG 478 (974)
T ss_pred CeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeeccccc
Confidence 9999999999999999999999999999999999999999999996 59999999999999999999999999999999
Q ss_pred cccceeeecCCcccEEE-eCChhH---HHHHHh--------------hhc-CCCcceEecCCeeeeeccCCccchhccCC
Q 005849 466 HRIPVWYIVGKEEEYIV-ARNADE---ALEKAH--------------QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGW 526 (674)
Q Consensus 466 ~piP~~~~~~~~~~~~~-~~~~~~---~~~~~~--------------~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~ 526 (674)
+|||+|++.+ ++..++ ...+.. +.+... ..+ ++...+.+++||||||||||+++....+.
T Consensus 479 ~pIP~~~~~~-~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~ 557 (974)
T PLN02843 479 VPIPVFYHVE-TKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS 557 (974)
T ss_pred cEEEEEEEcC-CCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhcc
Confidence 9999999965 333332 222221 111110 011 11335889999999999999977654432
Q ss_pred CCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh----
Q 005849 527 PDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK---- 602 (674)
Q Consensus 527 ~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~---- 602 (674)
..+.+||+|++++|+||+|+|++++++.++++.++.||+++++||+++|.+|+|||||+||+|+|.++++
T Consensus 558 ------~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~ 631 (974)
T PLN02843 558 ------REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKN 631 (974)
T ss_pred ------ccccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccc
Confidence 1234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----hhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--hhHHHHHHHhHHHHHh
Q 005849 603 -----EFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND--ISRWEILLAYKVCVLT 671 (674)
Q Consensus 603 -----~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~--~~~~~~L~~~~~~~~~ 671 (674)
+||+|+||||+++.++++|++|+.+.++++++.+++|||+++|+++|+.++++ ..+..++...|+|+|+
T Consensus 632 ~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLs 707 (974)
T PLN02843 632 QKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALF 707 (974)
T ss_pred cccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHH
Confidence 79999999999998889999999999999999999999999999999988764 1234556677999986
No 16
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-133 Score=1181.43 Aligned_cols=601 Identities=35% Similarity=0.639 Sum_probs=551.3
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ ++|++||++|++++.|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 6 LPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 3678999 899999999999999998766667889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.++++.+ |+++.++++++|.+.|++|++++.+.|++++++||+++||+++|.|+||+|.++++++|.+|+
T Consensus 86 ~~Glpie~~~ek~~---g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~ 162 (800)
T PRK13208 86 DNGLPTERKVEKYY---GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY 162 (800)
T ss_pred CCcchHHHHHHHHh---CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999998887644 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+ +.+++|||||||||+|++||+|||++++|++|+|
T Consensus 163 ~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g 241 (800)
T PRK13208 163 KKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLPACVAVVVHPDDERYKHLVG 241 (800)
T ss_pred HCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhhhCeEEEECCCchHHHHhcC
Confidence 999999999999999999999999999999999999999999985 5689999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i 377 (674)
+.+.+|++ ++++||++++||++++|||+||+||+|+++||++++++|||+++++|++|++++++|.|+|++++|||++|
T Consensus 242 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i 320 (800)
T PRK13208 242 KTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKI 320 (800)
T ss_pred CEEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCC-Cc
Q 005849 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK-DW 456 (674)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~-DW 456 (674)
++.|+++|++++.+++.|++|+|||||+++++++++||||++++++++++++++ +++|+|++.++++.+||++++ ||
T Consensus 321 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~DW 398 (800)
T PRK13208 321 VEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNWDW 398 (800)
T ss_pred HHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999995 589999999999999999988 99
Q ss_pred eeecccCCCcccceeeecCCcccEEEeCChhHH----HHHHh-----hhcCCCcceEecCCeeeeeccCCccchhccCCC
Q 005849 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEKAH-----QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527 (674)
Q Consensus 457 ~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~ 527 (674)
||||||+||+|||+|+|++ ++..+++. ..++ ...+. ..|+. ..++|++|||||||||+++|++.++||
T Consensus 399 ~ISRqr~WG~pIP~~~~~~-~g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g~-~~~~~~~dvlD~WfdS~~~~~~~~~~~ 475 (800)
T PRK13208 399 CISRQRYFGTPIPVWYCKD-CGHPILPD-EEDLPVDPTKDEPPGYKCPQCGS-PGFEGETDVMDTWATSSITPLIVTGWE 475 (800)
T ss_pred eeeeccccCCcceEEEeCC-CCCeecCc-hhhhccCchhhccccccccccCC-cCEEecCCEEEEEEeCCchHHHHhCCC
Confidence 9999999999999999976 34444331 1111 00001 11221 358999999999999999999999998
Q ss_pred CCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChh
Q 005849 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607 (674)
Q Consensus 528 ~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD 607 (674)
.+. .+|++|||+|++++|+||+++|++++++++.++.++.||+++++||++++.+|+|||||+||+|+|.|++++||+|
T Consensus 476 ~~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D 554 (800)
T PRK13208 476 RDE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGAD 554 (800)
T ss_pred CCh-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCcc
Confidence 765 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 608 ALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 608 ~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
++|||++.+++++|++|+.+.+..+++++++|||+++|++. +.+.......+.+...|+|+++
T Consensus 555 ~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~~~~~~~~~~D~~il~ 617 (800)
T PRK13208 555 AVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPEPDKAEVLEPLDRWILA 617 (800)
T ss_pred HHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccccCccccCCHHHHHHHH
Confidence 99999996666999999999999999999999999999873 3321111122345667888875
No 17
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.5e-134 Score=1157.87 Aligned_cols=552 Identities=41% Similarity=0.772 Sum_probs=485.1
Q ss_pred HHHHHHHhCCCCCCC--CCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHH
Q 005849 70 RIYNWWESQGYFKPN--FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (674)
Q Consensus 70 ~~~~~W~~~~~f~~~--~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~v 147 (674)
+||++|+++++|+.. .++++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++||||||+|+|.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999987 455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 148 EKMLAA-EGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 148 e~~~~~-~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
++.+.. .+.+..++++++|++.|++|++++.+.+++++++||+++||+++|+|+||+|.++++++|.+|+++|+||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 887632 2335678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccccchhhccCCCCeeEEEEEeecCCC-ceEEEeecCCCcccCCceEEeCCC-----------------
Q 005849 227 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQ----------------- 288 (674)
Q Consensus 227 ~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~-~~l~v~Tt~Petl~~~~av~v~p~----------------- 288 (674)
++|+|||.|+|+|||+||+|++..++++||+|++.+.+ .+|+|||||||||+||+||+|||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~ 240 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLV 240 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHH
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHH
Confidence 99999999999999999999999999999999998865 499999999999999999999999
Q ss_pred ------------CchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC
Q 005849 289 ------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (674)
Q Consensus 289 ------------~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G 356 (674)
+.++++|+|+++.+|++ ++.+||++++||++++|||+||+|||||++||+++++++||+++++|++|
T Consensus 241 ~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 241 EKLSKQEKTKLEDFRGKELVGLKYIHPLT-GREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHHHTTTSSSEEEEECHHHTTSEEE-TTS-SSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHHHhhhhhcccccCcceecCcEeccccc-cceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 66789999999999994 79999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 357 ~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
++++.+|.|+|++++|||+.|+++|+++|++++.+++.|++|+|||||++|++++++||||++++++++++++++ +++
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE--KIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH--TSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc--cce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHH--------------hhhc-CCCc
Q 005849 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA--------------HQKY-GKNV 501 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~ 501 (674)
|+|+..++++.+||++++||||||||+||+|||+|++++ ++...+..+..+..... .+.+ ..+.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCED-CGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGG 476 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETT-SEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSS
T ss_pred EEcccchhhhhhhccccccchhhccCCCCccceeeeccc-Cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999987 33343333333322111 0111 2345
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d 581 (674)
.+.+++||||||||||++|++.+++|.+++.+|++|||+|++++|+||+++|++++++++.++.++.||+++++||+++|
T Consensus 477 ~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld 556 (601)
T PF00133_consen 477 ELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLD 556 (601)
T ss_dssp EEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEE
T ss_pred ceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccc
Confidence 78999999999999999999999999987799999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccC
Q 005849 582 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLS 625 (674)
Q Consensus 582 ~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs 625 (674)
.+|+|||||+||+|+|.+++++||||++|||+++ +.+.+|++||
T Consensus 557 ~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 557 EDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999999999999999995 5559999986
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=3e-132 Score=1183.33 Aligned_cols=607 Identities=32% Similarity=0.554 Sum_probs=544.1
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
|+.||+ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 3 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~ 82 (861)
T TIGR00392 3 PMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGW 82 (861)
T ss_pred CCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 466999 89999999999999999754 345778999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (674)
||||+|||.++++.+...+. +...+++++|.+.|++|+.++.+.++++|++||+++||+++|.|+||.|.++++++|.+
T Consensus 83 D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~ 162 (861)
T TIGR00392 83 DTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKE 162 (861)
T ss_pred CCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999887632221 22235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceEEcccceeccCCCCcccccchhhccC----CCCeeEEEEEeecCCCc--------eEEEeecCCCcccCCceE
Q 005849 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD--------FLTIATTRPETLFGDVAL 283 (674)
Q Consensus 216 L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~~~kf~~~~~~~--------~l~v~Tt~Petl~~~~av 283 (674)
|+++|+||++.++|+|||.|+|+|||+||+|++ ..++++||+|++.+.+. +++|||||||||+||+||
T Consensus 163 l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai 242 (861)
T TIGR00392 163 AHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAI 242 (861)
T ss_pred HHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeee
Confidence 999999999999999999999999999999987 78999999999976544 899999999999999999
Q ss_pred EeCCCCc-----------hh--------------------------hhccCcEEecCCCCCcee------ee-eeccccc
Q 005849 284 AVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGRHV------PI-ISDKYVD 319 (674)
Q Consensus 284 ~v~p~~~-----------~y--------------------------~~l~G~~~~~P~~~~~~v------pi-i~~~~V~ 319 (674)
+|||+++ +| ++|+|+++.||++ ++++ || ++++||+
T Consensus 243 ~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~~~~~~~~p~v~~~~~V~ 321 (861)
T TIGR00392 243 AVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY-DFVSQLKEGAPVVIGGDHVT 321 (861)
T ss_pred eeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC-ccccccccCCcEEeCCCCCC
Confidence 9999975 33 4689999999995 6777 86 5569999
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-------ccCCCCHHHHHHHHHHHHHHcCCcccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEARKKLWSDLEETGLAVKKEP 392 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-------~~~g~~~~~ar~~i~~~L~~~g~~~~~~~ 392 (674)
+++|||+||+|||||++||++++++|||+++++|++|+++++.+ .|+|+++.|||++|+++|+++|++++.++
T Consensus 322 ~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~ 401 (861)
T TIGR00392 322 TEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEK 401 (861)
T ss_pred CCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeee
Confidence 99999999999999999999999999999999999999876554 58999999999999999999999999999
Q ss_pred cccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceee
Q 005849 393 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 472 (674)
Q Consensus 393 ~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~ 472 (674)
+.|.+|+|||||++|++++++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+|+
T Consensus 402 ~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 479 (861)
T TIGR00392 402 ITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWY 479 (861)
T ss_pred EecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEE
Confidence 999999999999999999999999999999999999995 699999999999999999999999999999999999999
Q ss_pred ecCCcccEEEeCChhHHHHHHhh--------------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChh
Q 005849 473 IVGKEEEYIVARNADEALEKAHQ--------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD 532 (674)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~ 532 (674)
|++++ ..++..++++...+... .+++...+.|++|||||||||+++|++..+||.+. .
T Consensus 480 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~-~ 557 (861)
T TIGR00392 480 CEDTG-EPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN-E 557 (861)
T ss_pred ECCCC-CCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc-c
Confidence 98633 34666666665432110 12222568999999999999999999999998765 5
Q ss_pred hhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHH
Q 005849 533 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 612 (674)
Q Consensus 533 ~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~ 612 (674)
+|++|||+|++++|+||+++|+.++++.++++.+..||+++++||++++.+|+|||||+||+|+|.|++++||+|++|||
T Consensus 558 ~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ 637 (861)
T TIGR00392 558 KFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLY 637 (861)
T ss_pred hhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHH
Confidence 79999999999999999999999999999888899999999999999988999999999999999999999999999999
Q ss_pred HhcCCCCCccccCHHHHHHHHH-HHHHHHHHHHHHH--hcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 613 ISLGTAGQDLSLSIERLTANKA-FTNKLWNAGKFIL--QNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 613 l~~~~~~~d~~fs~~~l~~~~~-~~~kl~n~~~f~~--~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
+++.++.+|++|+++.+....+ +.+++||+++|++ +++.++++. .+...+...|+|+++
T Consensus 638 ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~ 702 (861)
T TIGR00392 638 VASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILS 702 (861)
T ss_pred HHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHH
Confidence 9999559999999999988555 8999999999998 777766531 122345667888875
No 19
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-119 Score=1083.37 Aligned_cols=601 Identities=23% Similarity=0.368 Sum_probs=506.2
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCC----CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFER----GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~----~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
++.+++ ++|++||++|+++++|+.+.+. ++++|++++||||+||.|||||++|++++|+++||+||+||+|+|++
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 467888 8999999999999999997653 23779999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHH---HHcCCCc----------------------cccCHHHHHHHHHHHHHH-------------
Q 005849 135 GTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEWKEK------------- 176 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~---~~~g~~~----------------------~~l~~e~f~~~~~~~~~~------------- 176 (674)
||||||+||+..+++.. .+.|..+ +++.+++|.+.|++++.+
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 99999999999988753 3445432 345667888888877644
Q ss_pred --------------------HHHHHHHHHHHhccccCCCCccccCC--hhHHHHHHHHHHHHHHcCceEEcccceeccCC
Q 005849 177 --------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (674)
Q Consensus 177 --------------------~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~ 234 (674)
|...++++|++||+++||+|+|.|+| |.|.++++|+|.+|+++|+||++.++|+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 33678999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccccchhhccCCCCeeEE--EEEeec-----------CCCceEEEeecCCCcccCCceEEeCCCCc-----------
Q 005849 235 LQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE----------- 290 (674)
Q Consensus 235 ~~t~lsd~Ev~~~~~~~~~~~--~kf~~~-----------~~~~~l~v~Tt~Petl~~~~av~v~p~~~----------- 290 (674)
|+|+|||+|++|++..+++.| |||++. +.+.++++||||||||+||+||+|||+.+
T Consensus 250 ~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~ 329 (1084)
T PLN02959 250 DGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEV 329 (1084)
T ss_pred CCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeE
Confidence 999999999999998888877 568753 34579999999999999999999999976
Q ss_pred -----h------h------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHH-
Q 005849 291 -----H------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL- 340 (674)
Q Consensus 291 -----~------y------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~- 340 (674)
+ | ++|+|+.+.+|++....+||+++.||++++|||+||+||+|+++||++
T Consensus 330 ~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~ 409 (1084)
T PLN02959 330 FILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMAL 409 (1084)
T ss_pred EEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHH
Confidence 1 4 579999999999643349999999999999999999999999999998
Q ss_pred ---------HHHhCC--------CeeeeccCCCc----------------------------------cccc---ccccC
Q 005849 341 ---------ARKLGL--------PILNVMNKDGT----------------------------------LNEV---AGLFR 366 (674)
Q Consensus 341 ---------~~~~~l--------~~~~~~~~~G~----------------------------------~~e~---~g~~~ 366 (674)
+++||| +++.++|.+|. +.+. +|.|+
T Consensus 410 ~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~ 489 (1084)
T PLN02959 410 SDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYA 489 (1084)
T ss_pred HhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcC
Confidence 577887 45778777653 2232 68999
Q ss_pred CCCHHHHHHHHHHHHHHcCCccc-ccccccccccccCCCCcccceeeccccccch--HHHHHHHHHHHhCCceEechhHH
Q 005849 367 GLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKALHAVEKGELTIMPERFE 443 (674)
Q Consensus 367 g~~~~~ar~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~ 443 (674)
|+.|.|||++|+++|+++|+++. .++ ..|+|+|||++|++++++||||+++ +++++++++++ +++|+|+..+
T Consensus 490 G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~--~v~~~P~~~~ 564 (1084)
T PLN02959 490 GRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLS--KMNLYSDETR 564 (1084)
T ss_pred CcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHc--ccEEECHHHH
Confidence 99999999999999999998874 454 2589999999999999999999998 69999999995 6999999999
Q ss_pred HHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCC---cceEe-cCCeeeeec
Q 005849 444 KIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKN---VEIYQ-DPDVLDTWF 514 (674)
Q Consensus 444 ~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~dvld~Wf 514 (674)
+++.+||++++||||||||+||||||+ |++++++++ |+...++.+..... ..++.+ +...+ ++||+|+||
T Consensus 565 ~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~-~~~g~~~~~i~~~~~~~dV~D~wF 643 (1084)
T PLN02959 565 HGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGG-DMYGKDKSSIKPEQMTDEVWDFVF 643 (1084)
T ss_pred HHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhh-hccCCccccCChhhcCccceeEee
Confidence 999999999999999999999999993 344544443 44445555544331 112211 11222 689999999
Q ss_pred cCCccchhccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc-ceeEeeeeEeCCCCccccc
Q 005849 515 SSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSK 589 (674)
Q Consensus 515 ds~~~~~~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSK 589 (674)
+|++||+++ +||.+. +.+|++|||+|++++|+||+++|+.++++.+.++.++.|| +.+++||+++ .+|+||||
T Consensus 644 ~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSK 721 (1084)
T PLN02959 644 CGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSK 721 (1084)
T ss_pred cCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccc
Confidence 999999987 888753 5789999999999999999999999999999999999999 5799999999 89999999
Q ss_pred cCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHH
Q 005849 590 TLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVC 668 (674)
Q Consensus 590 S~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~ 668 (674)
|+||+|+|.+++++||+|++||||++..+ .+|.+|+.+.+.. ...+++|.++|+..++.......+.+.+...|+|
T Consensus 722 SkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~w 798 (1084)
T PLN02959 722 STGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRTGPPSTYADRV 798 (1084)
T ss_pred cCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHH
Confidence 99999999999999999999999998866 8999999988764 4555667666766654321110112235678999
Q ss_pred HHh
Q 005849 669 VLT 671 (674)
Q Consensus 669 ~~~ 671 (674)
+|+
T Consensus 799 ils 801 (1084)
T PLN02959 799 FEN 801 (1084)
T ss_pred HHH
Confidence 986
No 20
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=3.5e-117 Score=1054.49 Aligned_cols=573 Identities=25% Similarity=0.391 Sum_probs=495.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
++|++||++|+++++|+.+.+ .+++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|||+||+|++.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 589999999999999998754 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------CccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 146 VVEKMLAAEGI------KRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 146 ~ve~~~~~~g~------~~~~l~~e~f~~~~--~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
.+++.....+. ...++++++|.+.| ++|++++...++++|++||+++||+|+|+|+||.|.++++|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 88875433221 34578899999987 89999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCc-----
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE----- 290 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~----- 290 (674)
++|+||++.++|+|||.|+|+|||+|+++.+..+ .+++|+|++.+.+.++++||||||||+|++||+|||+++
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~ 240 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAE 240 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEE
Confidence 9999999999999999999999999999887654 679999999877779999999999999999999999986
Q ss_pred ----------------hh-------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHH
Q 005849 291 ----------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341 (674)
Q Consensus 291 ----------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~ 341 (674)
+| ++|+|+.+.+|++ ++++||++++||++++|||+||+||+|+++||+++
T Consensus 241 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~-~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~ 319 (938)
T TIGR00395 241 VGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVV-GPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIAL 319 (938)
T ss_pred eCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCC-CCeeEEeecceeecCCCcceEEeCCCCCHHHHHHH
Confidence 23 6899999999984 78999999999999999999999999999999998
Q ss_pred HHh--------------CCCeeeeccC---------------------------------------CCcccccccccCCC
Q 005849 342 RKL--------------GLPILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (674)
Q Consensus 342 ~~~--------------~l~~~~~~~~---------------------------------------~G~~~e~~g~~~g~ 368 (674)
+++ +++++.+++. +|+|++++|.|+|+
T Consensus 320 ~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~ 399 (938)
T TIGR00395 320 EDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399 (938)
T ss_pred HHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCc
Confidence 874 3444544422 46777788999999
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccch--HHHHHHHHHHHhCCceEechhHHHH
Q 005849 369 DRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--PLAEKALHAVEKGELTIMPERFEKI 445 (674)
Q Consensus 369 ~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~~~ 445 (674)
++.|||++|+++|+++|.+++.+.+.+ .|+|+|||++++++ +++||||+++ +++++++++++ +++|+|+..+++
T Consensus 400 ~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~--~~~~~P~~~~~~ 476 (938)
T TIGR00395 400 KVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLE--GMRIIPEEVKNA 476 (938)
T ss_pred CHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHh--cCEEeCHHHHHH
Confidence 999999999999999999998766533 57788999999998 9999999999 59999999997 589999999999
Q ss_pred HHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccc
Q 005849 446 YNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520 (674)
Q Consensus 446 ~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~ 520 (674)
+.+||++++||||||||+||+|||+ |.+++.+++ |+...++.+..... .++. . ....+++|+||.++..+
T Consensus 477 ~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--~~~~-~--~l~~ev~D~~~~~~~~~ 551 (938)
T TIGR00395 477 FEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--YYGN-E--QMTDEFFDYIFLGKGDV 551 (938)
T ss_pred HHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--CCCh-H--HCCcccCceEEECCCCh
Confidence 9999999999999999999999997 666654443 22222332222110 0110 0 12467899999875444
Q ss_pred hhccCCCCC----ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc-ceeEeeeeEeCCCCccccccCCCcc
Q 005849 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVI 595 (674)
Q Consensus 521 ~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i 595 (674)
...++|.. .+++|++|||+|++++|+||+++|...+++++.++.+..|| +++++||++++ +|+|||||+||+|
T Consensus 552 -~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI 629 (938)
T TIGR00395 552 -KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVL 629 (938)
T ss_pred -hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCC
Confidence 33455543 14689999999999999999999988888887777665555 89999999995 9999999999999
Q ss_pred ChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005849 596 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 596 ~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~ 650 (674)
+|.+++++||+|++||||++... ++|++|+++.+.++.+++++++|+++++....
T Consensus 630 ~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~ 685 (938)
T TIGR00395 630 TLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKES 685 (938)
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998865 99999999999999999999999999877543
No 21
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1e-110 Score=987.05 Aligned_cols=530 Identities=29% Similarity=0.457 Sum_probs=447.7
Q ss_pred CCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 005849 63 FDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (674)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl 141 (674)
||+ ++|++||++|+++++|+...+.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||+||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 788 8999999999999999987766678899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCc
Q 005849 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (674)
Q Consensus 142 ~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGl 221 (674)
|+|.++ .+.|+++. +|++++++.|+++|++||+++||+++|.|+||+|.+++|++|.+|+++|+
T Consensus 81 pie~~a----~~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGl 144 (842)
T TIGR00396 81 PAENAA----IKRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144 (842)
T ss_pred HHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 977665 34577764 68899999999999999999999999999999999999999999999999
Q ss_pred eEEcccceeccCCCCcccccchhhccC---CC-----------------------------------------------C
Q 005849 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE---EP-----------------------------------------------G 251 (674)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~---~~-----------------------------------------------~ 251 (674)
||++.++|+|||.|+|+||++||++.. .. +
T Consensus 145 iy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred eEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999995311 11 2
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhh---------------------------------hccCc
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~---------------------------------~l~G~ 298 (674)
..++++|++.+.+.+|+|||||||||+|+++|+|||+++++. .++|+
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGI 304 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCC
Confidence 347888998876679999999999999999999999997542 27899
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC------------CCcccccccccC
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------DGTLNEVAGLFR 366 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~------------~G~~~e~~g~~~ 366 (674)
++.||++ ++.+||+.++||++++|||+||+|||||++||++++++|||+++++++ +|++++ .|.|+
T Consensus 305 ~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~ 382 (842)
T TIGR00396 305 KAIHPLT-GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFN 382 (842)
T ss_pred EEECCCC-CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcC
Confidence 9999994 899999999999999999999999999999999999999999999984 677775 48999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHH
Q 005849 367 GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446 (674)
Q Consensus 367 g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~ 446 (674)
|+.+.||++.|+++|+++|++.+. +.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~--------------------------------------------v~---------- 408 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRK--------------------------------------------VN---------- 408 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCce--------------------------------------------EE----------
Confidence 999999999999999999985321 11
Q ss_pred HHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCC-----hhHHHH----------HHh----hhc-CCCcceEec
Q 005849 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN-----ADEALE----------KAH----QKY-GKNVEIYQD 506 (674)
Q Consensus 447 ~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~-----~~~~~~----------~~~----~~~-~~~~~~~~~ 506 (674)
.+++|||||||||||+|||+|+|++ ++.+.+..+ ..+... ... ..| .++..+.|+
T Consensus 409 ----yrlrDW~ISRQRyWG~PIPi~~~~~-~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~re 483 (842)
T TIGR00396 409 ----YRLRDWLFSRQRYWGEPIPIIHCED-GGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRE 483 (842)
T ss_pred ----eecccceeecccccCCceEEEEECC-CCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeC
Confidence 1478999999999999999999975 333332221 111000 000 112 124468999
Q ss_pred CCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehhh--hhHHHHHH----HHhhhhcCCCCcceeEe
Q 005849 507 PDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL--FFWVARMV----MMGIEFTGSVPFSHVYL 575 (674)
Q Consensus 507 ~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Dii--~~w~~~~~----~~~~~~~~~~Pf~~v~~ 575 (674)
+|||||||||+ ||+.++.+|.+. ++.|++|||+|++++|+|+. |.|++++. ...-.+.++.||+++++
T Consensus 484 tDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~ 562 (842)
T TIGR00396 484 TDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLIN 562 (842)
T ss_pred CCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhc
Confidence 99999999988 999888877652 46788999999999999864 44444442 22222567899999999
Q ss_pred eeeEeC----CCCc---------------------------cccccCCCccChhhHHhhhChhHHHHHHhcCC-CCCccc
Q 005849 576 HGLIRD----SQGR---------------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGT-AGQDLS 623 (674)
Q Consensus 576 hg~v~d----~~G~---------------------------KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~-~~~d~~ 623 (674)
|||+++ .+|+ |||||+||+|+|.+++++||+|++|||+++.+ ++++++
T Consensus 563 ~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~ 642 (842)
T TIGR00396 563 QGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLE 642 (842)
T ss_pred cceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCc
Confidence 999998 8888 99999999999999999999999999999765 599999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 624 fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
|+.+.+++++++++||||+++++++++.+++. .+...+...|+|+++
T Consensus 643 ~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~-~~~~~l~~~d~~il~ 689 (842)
T TIGR00396 643 WNDSGLEGARRFLDRVWNLFYNILGELDGKTY-LTPTILEEAQKELRR 689 (842)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhccccc-CCcccCCHHHHHHHH
Confidence 99999999999999999999999888765331 112335667888875
No 22
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-111 Score=901.70 Aligned_cols=613 Identities=25% Similarity=0.431 Sum_probs=556.0
Q ss_pred CCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
.+.++++++ +-|+++.++|.+.+.|+... .+++++|.+.+|||++||-+|-||++..+|+|++.||..|.||.|..-
T Consensus 2 ~~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRR 81 (1070)
T KOG0434|consen 2 SEVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERR 81 (1070)
T ss_pred CcccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeee
Confidence 345788999 78999999999999999753 456889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHH
Q 005849 134 PGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (674)
Q Consensus 134 ~G~D~~Gl~~e~~ve~~~~~~g~-~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 212 (674)
+||||||+|+|..+.+.+...|. +..++|.+++...|+..+-.|...++++..|||-|+||++.|.|++|.+.+.|+|+
T Consensus 82 FGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwv 161 (1070)
T KOG0434|consen 82 FGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWV 161 (1070)
T ss_pred cccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHH
Confidence 99999999999999987733332 23457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceEEcccceeccCCCCcccccchh--hccCCCCeeEEEEEeecC-CCceEEEeecCCCcccCCceEEeCCCC
Q 005849 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD 289 (674)
Q Consensus 213 f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~-~~~~l~v~Tt~Petl~~~~av~v~p~~ 289 (674)
|++|+++|++|+|.+.++||..|.|+||+-|. .|++..++++++.|++.+ ....+++|||+|||||+|.|++|||+.
T Consensus 162 FkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~ 241 (1070)
T KOG0434|consen 162 FKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDF 241 (1070)
T ss_pred HHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCe
Confidence 99999999999999999999999999999776 599999999999999877 678899999999999999999999996
Q ss_pred ch----------------------h----------------hhccCcEEecCCC------CCceeeeeecccccccCCCc
Q 005849 290 EH----------------------Y----------------SQFIGMMAIVPMT------YGRHVPIISDKYVDKEFGTG 325 (674)
Q Consensus 290 ~~----------------------y----------------~~l~G~~~~~P~~------~~~~vpii~~~~V~~~~GTG 325 (674)
.+ | ++|+|+++..+|- ......|+.++||+.+.|||
T Consensus 242 ~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTG 321 (1070)
T KOG0434|consen 242 QYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTG 321 (1070)
T ss_pred EEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCce
Confidence 41 1 2578888877763 24578999999999999999
Q ss_pred ceeeCCCCChhhHHHHHHhCC-----CeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccc
Q 005849 326 VLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (674)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~ 400 (674)
+||++|+.|++||++|...|+ -+.|++|++|.++.....|+|..|+||.+.|++.|++.|.+++...+.|+||+|
T Consensus 322 iVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFC 401 (1070)
T KOG0434|consen 322 IVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFC 401 (1070)
T ss_pred eeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCce
Confidence 999999999999999999885 457899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHH-HHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE-KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 401 ~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~-~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
|||.+|++++++|.||++++.+.+++++..+ +..|+|...+ ++|.|||++.+||.|||.|+||+|||+|..++ .+.
T Consensus 402 WRSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD-~ee 478 (1070)
T KOG0434|consen 402 WRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDD-YEE 478 (1070)
T ss_pred ecCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccC-Cce
Confidence 9999999999999999999999999998754 6889999985 79999999999999999999999999999987 778
Q ss_pred EEEeCChhHHHHHHhhhc----------------CCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCccee
Q 005849 480 YIVARNADEALEKAHQKY----------------GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTML 543 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~ 543 (674)
.++..|+.|+.+....+. +....+.|.++|+|.||+||+||+++.+||.++++.|+.-||+|++
T Consensus 479 vVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFI 558 (1070)
T KOG0434|consen 479 VVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFI 558 (1070)
T ss_pred EEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhh
Confidence 899999999876543321 1135688999999999999999999999999999999999999999
Q ss_pred EEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC--CCc
Q 005849 544 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQD 621 (674)
Q Consensus 544 ~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~--~~d 621 (674)
-+|.||.|+|++.++.++.++.++.||++++++|+|+..+|+|||||+.|.-+|..++++||||+||+||+.++- ...
T Consensus 559 aEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~ 638 (1070)
T KOG0434|consen 559 AEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAEN 638 (1070)
T ss_pred hhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 789
Q ss_pred cccCHHHHHH-HHHHHHHHHHHHHHHHhcCCC--------CCChhHHHHHHHhHHHHHhh
Q 005849 622 LSLSIERLTA-NKAFTNKLWNAGKFILQNLPS--------QNDISRWEILLAYKVCVLTY 672 (674)
Q Consensus 622 ~~fs~~~l~~-~~~~~~kl~n~~~f~~~~~~~--------~~~~~~~~~L~~~~~~~~~~ 672 (674)
+.|.++.+.+ .++.+..+||+++|+.+|..- |........-+.+|+||++.
T Consensus 639 LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~ 698 (1070)
T KOG0434|consen 639 LKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILAS 698 (1070)
T ss_pred cccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHH
Confidence 9999999988 678899999999999987521 22223333566799999974
No 23
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-109 Score=986.55 Aligned_cols=547 Identities=27% Similarity=0.427 Sum_probs=458.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHH----------H-cCCCccccCHHHHHHHHHHH
Q 005849 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA----------A-EGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 105 LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~----------~-~g~~~~~l~~e~f~~~~~~~ 173 (674)
|||||+++++++|+++||+||+||+|++++||||||+|+|.++++... . .|++.+++ ++|. .+++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f~-~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKFK-DPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHhc-CHHHH
Confidence 799999999999999999999999999999999999999988875321 1 25544433 3453 36899
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCee
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTL 253 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~ 253 (674)
++++.+.+++++++||+++||+|+|.|+||.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+|+++.+..+++
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~ 157 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV 157 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred --EEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCc---------------------hhh-------------hccC
Q 005849 254 --YYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIG 297 (674)
Q Consensus 254 --~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~---------------------~y~-------------~l~G 297 (674)
+||+|+ .+.+.++++||||||||+||+||+|||+++ +|. +|+|
T Consensus 158 ~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G 236 (897)
T PRK12300 158 EYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIG 236 (897)
T ss_pred eEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcC
Confidence 688998 556789999999999999999999999997 343 6999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhC--------CCeeeec-----------------
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM----------------- 352 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~--------l~~~~~~----------------- 352 (674)
+.+.+|++ ++.+||++++||++++|||+||+||+||++||+++++++ |+++.++
T Consensus 237 ~~~~~Pl~-~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~ 315 (897)
T PRK12300 237 KKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKL 315 (897)
T ss_pred CEEECCCC-CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHh
Confidence 99999995 789999999999999999999999999999999999998 6654333
Q ss_pred ------c---------------CCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 353 ------N---------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 353 ------~---------------~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
| .+|+|++++|.|+|+.++|||++|+++|+++|++++.+.+.| +|+|+|||++|++++
T Consensus 316 ~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 316 GIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKV 394 (897)
T ss_pred CCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEe
Confidence 3 489999999999999999999999999999999999888777 577779999999986
Q ss_pred -eccccccch--HHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EEEe
Q 005849 412 -SKQWFVTME--PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVA 483 (674)
Q Consensus 412 -~~qwfi~~~--~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~ 483 (674)
++||||+++ +++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+ |.+++++++ |+..
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhH
Confidence 599999998 79999999995 6999999999999999999999999999999999996 787765444 3333
Q ss_pred CChhHHHHHHh---hhcCCC---cceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 484 RNADEALEKAH---QKYGKN---VEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 484 ~~~~~~~~~~~---~~~~~~---~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
.++.+.+.... +..-++ .-+....+.+++|++|| +|...+. +.+++|++|||+|++++|+||+++|...+
T Consensus 473 ~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg-~p~~~~~---~~~~~f~~~~P~D~~~~GkDii~~Hl~~~ 548 (897)
T PRK12300 473 YTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTG-IPKEILE---EMREEFLYWYPVDWRHSGKDLIPNHLTFF 548 (897)
T ss_pred HHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcC-CCHHHHH---HHHHHHhccCCceEEEeeeccCccHHHHH
Confidence 33322221100 000000 00111123444444444 2333221 12467999999999999999999988888
Q ss_pred HHHhhhhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~ 635 (674)
++++.++.+..|+ +++++||++++ +|+|||||+||+|+|.+++++||+|++||||++..+ .+|.+|+.+.+....++
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~ 627 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQ 627 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHH
Confidence 8888888887777 89999999997 999999999999999999999999999999998765 99999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 636 ~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+++++|+++++.+...+ ..+...|+|+++
T Consensus 628 l~r~~~~~~~~~~~~~~-------~~~~~~D~wils 656 (897)
T PRK12300 628 LERFYELAKELIEIGGE-------EELRFIDKWLLS 656 (897)
T ss_pred HHHHHHHHHHHhcCCCc-------cccCHhHHHHHH
Confidence 99999999988764321 134456777765
No 24
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.1e-109 Score=973.89 Aligned_cols=508 Identities=30% Similarity=0.481 Sum_probs=433.9
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
.++.||+ ++|++||++|+++++|+... +.++++|+|+++||||||. |||||+++++++|+++||+||+||+|++++
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~ 155 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPM 155 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccc
Confidence 3788999 89999999999999999865 4457789999999999996 999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHH
Q 005849 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (674)
|||+||+|+|.++ .+.|.++. .|+.++++.|+++|++||+++||++++.|++|+|++++||+|.
T Consensus 156 G~D~~GlPiE~~a----~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~ 219 (963)
T PLN02563 156 GWDAFGLPAEQYA----IETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFL 219 (963)
T ss_pred cccccCcHHHHHH----HHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHH
Confidence 9999999976543 45576654 5778999999999999999999999999999999999999999
Q ss_pred HHHHcCceEEcccceeccCCCCcccccchhhcc--CCCCe----------------------------------------
Q 005849 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT---------------------------------------- 252 (674)
Q Consensus 215 ~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~--~~~~~---------------------------------------- 252 (674)
+|+++|+||++.++|+|||.|+|+||++||++. +..+.
T Consensus 220 ~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~n 299 (963)
T PLN02563 220 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRN 299 (963)
T ss_pred HHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHH
Confidence 999999999999999999999999999999874 22222
Q ss_pred ------eEEEEEeecC-----CCceEEEeecCCCcccCCceEEeCCCCc---------------hhhh------------
Q 005849 253 ------LYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDE---------------HYSQ------------ 294 (674)
Q Consensus 253 ------~~~~kf~~~~-----~~~~l~v~Tt~Petl~~~~av~v~p~~~---------------~y~~------------ 294 (674)
.++++|++.+ .+.+|+|||||||||+|+++|+|||+++ +|..
T Consensus 300 wiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~ 379 (963)
T PLN02563 300 WIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTE 379 (963)
T ss_pred hccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhh
Confidence 4788899865 2578999999999999999999999996 2321
Q ss_pred --------ccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC------------
Q 005849 295 --------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------ 354 (674)
Q Consensus 295 --------l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~------------ 354 (674)
+.|..+.||++ ++++||+.++||++++|||+||+|||||++||++++++|||++++++.
T Consensus 380 ~~~~k~g~~~g~~~~~P~~-~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y 458 (963)
T PLN02563 380 LQKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAY 458 (963)
T ss_pred ccceecccccCcEEeccCC-CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccc
Confidence 46889999995 899999999999999999999999999999999999999999999942
Q ss_pred --CCcccccccc----cCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHH
Q 005849 355 --DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALH 428 (674)
Q Consensus 355 --~G~~~e~~g~----~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~ 428 (674)
+|.+. +.|. |.|+.++||+++|+++|+++|++.+
T Consensus 459 ~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--------------------------------------- 498 (963)
T PLN02563 459 TGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK--------------------------------------- 498 (963)
T ss_pred cCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC---------------------------------------
Confidence 24443 2343 9999999999999999999998621
Q ss_pred HHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH-------HH---------
Q 005849 429 AVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL-------EK--------- 492 (674)
Q Consensus 429 ~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~-------~~--------- 492 (674)
.++| +++|||||||||||+|||+|+|++ +++.+... ++++. ..
T Consensus 499 -----~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~-cg~~v~v~-e~~Lpv~lpe~~~~~~~~~g~~p 557 (963)
T PLN02563 499 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLED-SGEPVPVP-ESDLPLTLPELDDFTPTGTGEPP 557 (963)
T ss_pred -----eeEe--------------cCCCceEeeecccCCceEEEEEcC-CCcEEecc-hHhCcccchhhhhcccCCCCCCc
Confidence 1222 589999999999999999999976 34333222 11110 00
Q ss_pred ---Hh----hhc-CCCcceEecCCeeeeeccCCccchhccCCCCCCh-----hhhhhcCCcceeEEeehhh-------hh
Q 005849 493 ---AH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTMLETGHDIL-------FF 552 (674)
Q Consensus 493 ---~~----~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~-----~~f~~~~P~d~~~~G~Dii-------~~ 552 (674)
.. ..| .++..+.||+|||||||+|+ ||+.++.+|+++. ..+++|||+|++++|.|+. ||
T Consensus 558 l~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rf 636 (963)
T PLN02563 558 LAKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARF 636 (963)
T ss_pred hhcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHH
Confidence 00 011 12456899999999999987 8888888998643 3345799999999999984 89
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeC---------CCCc--------------------------------------
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQGR-------------------------------------- 585 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d---------~~G~-------------------------------------- 585 (674)
|+.+|+.+++ +.++.||+++++|||+++ .+|+
T Consensus 637 w~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (963)
T PLN02563 637 WHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSI 715 (963)
T ss_pred HHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcc
Confidence 9999998888 467899999999999997 6677
Q ss_pred -------cccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHH
Q 005849 586 -------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFI 646 (674)
Q Consensus 586 -------KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~ 646 (674)
|||||+||+|+|.+++++||||++|||+++..+ .++++|+.+.+.++.++++++||++...
T Consensus 716 ~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~ 784 (963)
T PLN02563 716 RLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGA 784 (963)
T ss_pred cccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888 8999999999999999999999998764
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-108 Score=967.14 Aligned_cols=519 Identities=28% Similarity=0.465 Sum_probs=439.1
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++.||+ ++|++||++|+++++|+...+.+ ++|+++++||||||.|||||+++++++|+++||+||+|++|++++|||+
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 80 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 80 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 467999 89999999999999999876543 4788999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHH
Q 005849 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (674)
Q Consensus 139 ~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (674)
||+|+|.+++ +.|+++. +|++++++.|+++|++||+++||+++|.|+||+|.++++++|.+|++
T Consensus 81 ~Glpie~~a~----~~g~~~~------------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 81 FGLPAENAAI----KTGTHPA------------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCCHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 9999876653 4576654 78899999999999999999999999999999999999999999999
Q ss_pred cCceEEcccceeccCCCCcccccchhhccC--C-----------------------------------------------
Q 005849 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E----------------------------------------------- 249 (674)
Q Consensus 219 kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~--~----------------------------------------------- 249 (674)
+|+||++.++|+|||.|+|+||++||+... .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999997421 1
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhh---------------------------------cc
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FI 296 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~---------------------------------l~ 296 (674)
.+..++++|++.+.+.+++|||||||||+||+||+|||+++++.. |+
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 304 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFT 304 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeec
Confidence 124678999998767899999999999999999999999987533 58
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC--------------CCcccccc
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK--------------DGTLNEVA 362 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~--------------~G~~~e~~ 362 (674)
|+++.||++ ++++||+.++||++++|||+||+|||||++||++++++|||+++++|. +|++++.
T Consensus 305 g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~- 382 (805)
T PRK00390 305 GLYAIHPLT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINS- 382 (805)
T ss_pred CcEEECCCC-CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEec-
Confidence 999999995 789999999999999999999999999999999999999999999975 4445433
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhH
Q 005849 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~ 442 (674)
|.|+|+.+++||++|++.|++.|++. . .+.+
T Consensus 383 ~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~----------------------------~v~~----- 413 (805)
T PRK00390 383 GELDGLDSEEAKEAIIAWLEEKGLGK----------------R----------------------------KVNY----- 413 (805)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCC----------------C----------------------------ceEE-----
Confidence 88999999999999999999999841 1 1222
Q ss_pred HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHH----------------HHh----hhc-CCCc
Q 005849 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALE----------------KAH----QKY-GKNV 501 (674)
Q Consensus 443 ~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~----------------~~~----~~~-~~~~ 501 (674)
+++||||||||+||+|||+|+|++ ++...+. .+++.. ... ..| .++.
T Consensus 414 ---------~l~DW~ISRQR~WG~PIPi~~~~~-~g~~~v~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (805)
T PRK00390 414 ---------RLRDWGISRQRYWGEPIPIIHCED-CGIVPVP--EEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK 481 (805)
T ss_pred ---------ECCCccccccccCCCceeEEEECC-CCceeCc--hHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC
Confidence 468999999999999999999965 3332221 111110 000 112 1245
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehhh-------hhHHHHHHHHhhhhcCCCC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL-------FFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Dii-------~~w~~~~~~~~~~~~~~~P 569 (674)
.++|++|||||||||+ ||++.+++|+++ ++.|++|||+|++++|+|++ ++|...+..++. ..++.|
T Consensus 482 ~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~P 559 (805)
T PRK00390 482 PARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEP 559 (805)
T ss_pred CceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcc
Confidence 6999999999999997 999999888642 57899999999999999965 444433333333 467899
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~-~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~ 648 (674)
|+++++||++ |||||+||+|+|.+++++||||++|||+++. ++++|++|+.+.+.+++++++|+||++++.++
T Consensus 560 fk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~ 633 (805)
T PRK00390 560 FKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKG 633 (805)
T ss_pred hhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999999999986 45999999999999999999999999999766
Q ss_pred cCCCCCChhHHHHHHHhHHHHHh
Q 005849 649 NLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 649 ~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+..+++. .+...|+|+++
T Consensus 634 ~~~~~~~-----~~~~~D~~il~ 651 (805)
T PRK00390 634 EAGALDV-----AALSEDKELRR 651 (805)
T ss_pred cccccCc-----ccChhhHHHHH
Confidence 6554442 22356788775
No 26
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-108 Score=890.92 Aligned_cols=592 Identities=24% Similarity=0.379 Sum_probs=519.7
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+..+|. ..++++++-|....++....+ .++..|++.+ +||.||||||+|.|++||+.||+.++|.+|++++|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 556666 667779998888877765443 3467799998 9999999999999999999999999999999999999
Q ss_pred CCCchhHH-HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 138 HAGIATQL-VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 138 ~~Gl~~e~-~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|||+|+|. ++.+.+.++ ..+++.-+..++.+.++.+.++.+++.++|+||..||.++|.|+||+|+....++|.+|
T Consensus 103 chGLPiEs~kalssl~~~---~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTES---EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred cCCCchHHHHHhhhhhhc---cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 99999984 554433222 24455667788888999999999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhhccCC-CCeeEEEEEeecC------------CCceEEEeecCCCcccCCceE
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE-PGTLYYIKYRVAG------------RSDFLTIATTRPETLFGDVAL 283 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~-~~~~~~~kf~~~~------------~~~~l~v~Tt~Petl~~~~av 283 (674)
++|||||++.+||+|+|+.+|+||+.|+||.++ .++++|++|++.+ ++.|.+||||+|||||+|.||
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai 259 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAI 259 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCcccccccee
Confidence 999999999999999999999999999999875 7899999999864 358999999999999999999
Q ss_pred EeCCCCch-------------h--------------------------hhccCcEEecCCCCCceeeeeecccccccCCC
Q 005849 284 AVNPQDEH-------------Y--------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (674)
Q Consensus 284 ~v~p~~~~-------------y--------------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GT 324 (674)
++||+..+ | ..|.|.+|.||+.+.+..|++.+++|+++.||
T Consensus 260 ~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GT 339 (937)
T KOG0433|consen 260 SVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGT 339 (937)
T ss_pred eeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCccc
Confidence 99998642 1 24778899999988899999999999999999
Q ss_pred cceeeCCCCChhhHHHHHHhCCCeeeeccCCCccccccc-ccCCCCHH-HHHHHHHHHHHHcCCcccccccccccccccC
Q 005849 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (674)
Q Consensus 325 G~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g-~~~g~~~~-~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (674)
|+||++||||++||.++.++|||+.+++|++|+++.++| .+.|+.|. |..+.|+..|. +.+++.+++.|+||+.||
T Consensus 340 GLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWR 417 (937)
T KOG0433|consen 340 GLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWR 417 (937)
T ss_pred ceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999999999988 89999997 56677888777 888999999999999999
Q ss_pred CCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEE
Q 005849 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 403 ~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~ 482 (674)
+++|++.|+++|||+++++++..+.++++ ++++.|.....++..++..+++|||||||.||+|||++|..+ .++|+.
T Consensus 418 TKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~-~~~~l~ 494 (937)
T KOG0433|consen 418 TKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKN-GGSYLS 494 (937)
T ss_pred cCCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecC-CCceee
Confidence 99999999999999999999999999997 599999999999999999999999999999999999999866 355544
Q ss_pred eCChhH-HHHHHhh-----------------hc----CC-CcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCC
Q 005849 483 ARNADE-ALEKAHQ-----------------KY----GK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539 (674)
Q Consensus 483 ~~~~~~-~~~~~~~-----------------~~----~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P 539 (674)
.....+ +..+... .+ ++ ...+.+.+|+||+|||||..+-+..+ +.+-.+
T Consensus 495 ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~--------~~~~~~ 566 (937)
T KOG0433|consen 495 NSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLD--------NEREHV 566 (937)
T ss_pred hHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecC--------CCCCcc
Confidence 432222 1111100 00 11 12467899999999999976655443 233457
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh------hChhHHHHHH
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------FGADALRFTI 613 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~------ygaD~lR~~l 613 (674)
+|++++|.||.++||++.++++++..++.||+.+++|||++|.+|.|||||.||||+|+.+++. ||+|+||||+
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WV 646 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV 646 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeee
Confidence 8999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred hcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---hhHHHHHHHhHHHHHh
Q 005849 614 SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQND---ISRWEILLAYKVCVLT 671 (674)
Q Consensus 614 ~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~---~~~~~~L~~~~~~~~~ 671 (674)
+......++...++.|+++.+.+.|+++++||++||+.+++. ..|..+|.--|.+.|.
T Consensus 647 A~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ 707 (937)
T KOG0433|consen 647 AGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQ 707 (937)
T ss_pred ecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHH
Confidence 977778999999999999999999999999999999998885 3788999888888774
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-90 Score=789.96 Aligned_cols=510 Identities=29% Similarity=0.484 Sum_probs=423.0
Q ss_pred CCCCCh-HHHHHHHHHHHhCCCCCCCCCCCC-CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGS-DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~-~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
...|++ .||++||++|+++++|+.+.+.++ ++|+++++.|||||.|||||+|||+++|++|||+||+||+|++|+|||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 356787 899999999999999999877665 599999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
++|+| +++.+.+.|.+|. .|++++++.+++||++||.++||+|++.|+||+|++++||+|.+|+
T Consensus 82 afGlP----ae~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ 145 (814)
T COG0495 82 AFGLP----AENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY 145 (814)
T ss_pred ccCch----HHHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHH
Confidence 99999 5666667788887 7899999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhcc------CC------------------------------------------
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYS------EE------------------------------------------ 249 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~------~~------------------------------------------ 249 (674)
++||||+++.+|+|||.|+|+|+|+||... ..
T Consensus 146 ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nW 225 (814)
T COG0495 146 EKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNW 225 (814)
T ss_pred HCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcC
Confidence 999999999999999999999999999855 11
Q ss_pred --CCeeEEEEEeecCC--CceEEEeecCCCcccCCceEEeCCCCchhh--------------------------------
Q 005849 250 --PGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS-------------------------------- 293 (674)
Q Consensus 250 --~~~~~~~kf~~~~~--~~~l~v~Tt~Petl~~~~av~v~p~~~~y~-------------------------------- 293 (674)
.+..+-+.|.+.+. ...+.|+||||.|++|.+.+++-|+++..+
T Consensus 226 Ig~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~ 305 (814)
T COG0495 226 IGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAE 305 (814)
T ss_pred cCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCC
Confidence 11123333444332 356999999999999999999999986321
Q ss_pred ---hccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC-----------ccc
Q 005849 294 ---QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG-----------TLN 359 (674)
Q Consensus 294 ---~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G-----------~~~ 359 (674)
-..|..+.||++ +..+||+..+||.+..|||+||.||+|+.+|++.|++|+||+..++...+ . .
T Consensus 306 k~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~-l 383 (814)
T COG0495 306 KDGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV-L 383 (814)
T ss_pred CcceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce-E
Confidence 133566789995 59999999999999999999999999999999999999999998876543 3 2
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
-+.|.+.|++..+|...+... ++-+...|||++++
T Consensus 384 inS~~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y~------------------- 418 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNYR------------------- 418 (814)
T ss_pred eccccccCcchhHHHHHHHHh--------------------------HHHhcCCceEEecc-------------------
Confidence 245577788777664444433 45566789999865
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhh---------hc----------CCC
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ---------KY----------GKN 500 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----------~~~ 500 (674)
++||++||||+||.|||+.+|+.. .. ++..+.++...+++ +. ..+
T Consensus 419 -------------lrdW~~srqRywg~pipii~~e~~-~~--~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~ 482 (814)
T COG0495 419 -------------LRDWLKSRQRYWGEPIPIIHCEDC-GV--VPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPD 482 (814)
T ss_pred -------------cchHHHHHHHHhCCCcceeEcccC-Cc--ccCchHhcCcccccccccCCCCCCCCCCcceEEEecCC
Confidence 689999999999999999999752 21 22222222111111 00 123
Q ss_pred cceEecCCeeeeeccCCccchhccCCCCCC------hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc------CCC
Q 005849 501 VEIYQDPDVLDTWFSSALWPFSTLGWPDVS------ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT------GSV 568 (674)
Q Consensus 501 ~~~~~~~dvld~Wfds~~~~~~~~~~~~~~------~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~------~~~ 568 (674)
.+.+|+.+|||+|++|+ |++..+..|... ++.|++|||+|++++|+|.+-.|+....+...++. .+.
T Consensus 483 s~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~e 561 (814)
T COG0495 483 STAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDE 561 (814)
T ss_pred CceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCcc
Confidence 67899999999999999 776665544432 57899999999999999988777766666655553 357
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~ 647 (674)
||++++++|||+..+|+|||||+||+|+|++++++||||++|+|+++.++ .+|++|+++.+++++++++|+|+++.-..
T Consensus 562 pf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~ 641 (814)
T COG0495 562 PFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHL 641 (814)
T ss_pred chhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhh
Confidence 89999999999954899999999999999999999999999999999998 99999999999999999999999887665
Q ss_pred hc
Q 005849 648 QN 649 (674)
Q Consensus 648 ~~ 649 (674)
..
T Consensus 642 ~~ 643 (814)
T COG0495 642 EK 643 (814)
T ss_pred hc
Confidence 43
No 28
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.7e-85 Score=710.32 Aligned_cols=378 Identities=62% Similarity=1.142 Sum_probs=344.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|+|.++++.+...+++.+++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998877666666677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
|+++++++++.+++++++||+++||++.+.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997322
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
|+|||+++++
T Consensus 156 ----------------------------------------------------------------------c~~cg~~~~~ 165 (382)
T cd00817 156 ----------------------------------------------------------------------CSRSGDVIEP 165 (382)
T ss_pred ----------------------------------------------------------------------cccCCCeEEE
Confidence 8899999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
+.++||||+++++++++++.+++++++|+|++.++++.+||++++|||||||++||+|||+|+|++ ++.+++.....+.
T Consensus 166 ~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~ 244 (382)
T cd00817 166 LLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEA 244 (382)
T ss_pred EecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHH
Confidence 999999999999999999999977799999999999999999999999999999999999999975 4455555444444
Q ss_pred HHHHhh--hcC-CCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 490 LEKAHQ--KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 490 ~~~~~~--~~~-~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
...+.. .+. ....++++++|+||||||+++|++.++++.+. .+|+++||+|++++|+||+++|+.++++++..+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 245 IDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred HHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 333211 111 23478999999999999999999999998765 67999999999999999999999999999988888
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+.||+++++||++++.+|+|||||+||+|+|+|++++||+|++|||+++.++ .+|.+|
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 8899999999999999999999999999999999999999999999999887 888876
No 29
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-84 Score=699.73 Aligned_cols=503 Identities=29% Similarity=0.462 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
.+|+.|+++|+++..|.+..+.++++|++.+. |||+|.|||||.|.|++.|++|||+||+||+|++++|||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~KYiLsMF-PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP--- 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKKYILSMF-PYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP--- 109 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCceEEEec-CCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc---
Confidence 68999999999999998766666777888777 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 146 VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 146 ~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
+|+++.+.|+.|. .|+.++++.+++||++||++|||+|++.|++|+|+++.||+|.+|+++||+|+.
T Consensus 110 -AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 110 -AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred -hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 7888888999998 688999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCcccccchhhccC-------------------------------------------------CCCeeEEE
Q 005849 226 SYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------EPGTLYYI 256 (674)
Q Consensus 226 ~~~v~w~p~~~t~lsd~Ev~~~~-------------------------------------------------~~~~~~~~ 256 (674)
+..|||||.++|+|+++||.... ..+...-+
T Consensus 177 Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 177 EAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999995211 11223456
Q ss_pred EEeecC---CCceEEEeecCCCcccCCceEEeCCCCch------hhh------cc------CcEEecCCCCCceeeeeec
Q 005849 257 KYRVAG---RSDFLTIATTRPETLFGDVALAVNPQDEH------YSQ------FI------GMMAIVPMTYGRHVPIISD 315 (674)
Q Consensus 257 kf~~~~---~~~~l~v~Tt~Petl~~~~av~v~p~~~~------y~~------l~------G~~~~~P~~~~~~vpii~~ 315 (674)
.|++.+ .++.|.|+||+||||+|.+.+++.|++.. +++ |. +..+.+|++ |+++||+..
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~t-g~~iPv~~a 335 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVT-GRAIPVVVA 335 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCC-CceeeEEEe
Confidence 677765 35999999999999999999999999863 122 22 335789995 999999999
Q ss_pred ccccccCCCcceeeCCCCChhhHHHHHHhCCCeeee----ccCCCcccccccccCC-CCHHHHHHHHHHHHHHcCCcccc
Q 005849 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV----MNKDGTLNEVAGLFRG-LDRFEARKKLWSDLEETGLAVKK 390 (674)
Q Consensus 316 ~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~----~~~~G~~~e~~g~~~g-~~~~~ar~~i~~~L~~~g~~~~~ 390 (674)
+||....|||+++.||+|+.+|++++++-|+..+.. .+.+|+.++ .+.++| +.+++|+.+|.+.+++.|+.-..
T Consensus 336 ~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~-~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~ 414 (876)
T KOG0435|consen 336 DYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNE-QKAFTNLDIRQNAALKLFQFAERKGVGGYV 414 (876)
T ss_pred chhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhc-cccccchhHHHHHHHHHHHHHHhcCCCcce
Confidence 999999999999999999999999999966544322 344555443 345677 45567888888888877764221
Q ss_pred cccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce
Q 005849 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (674)
Q Consensus 391 ~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~ 470 (674)
-. ..|+||.||||||||+|||+
T Consensus 415 vs----------------------------------------------------------~kLkDWLiSRQRyWGTPIPi 436 (876)
T KOG0435|consen 415 VS----------------------------------------------------------YKLKDWLISRQRYWGTPIPI 436 (876)
T ss_pred ec----------------------------------------------------------chhhhhhhhhhhccCCCcce
Confidence 11 25789999999999999999
Q ss_pred eeecCCcccEEEeCChhHHH----------------HHHhh--hc---CCCcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 471 WYIVGKEEEYIVARNADEAL----------------EKAHQ--KY---GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~--~~---~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
.+|+. ++..-| .++++- .++.+ ++ .++...+||+|+||||+||+ |||.++-.|++
T Consensus 437 vhc~~-cG~vpV--pes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSs-WYYlRylDpkN 512 (876)
T KOG0435|consen 437 VHCDD-CGAVPV--PESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSS-WYYLRYLDPKN 512 (876)
T ss_pred EEcCC-CCcccC--cHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccc-eeeEeecCCCC
Confidence 99976 333222 222221 11111 11 23457899999999999998 77778877877
Q ss_pred Chhhh-----hhcCCcceeEEe--ehhhhhHHHHHHHHhhh----hcCCCCcceeEeeeeEeCC------CC--------
Q 005849 530 SADDF-----KKFYPTTMLETG--HDILFFWVARMVMMGIE----FTGSVPFSHVYLHGLIRDS------QG-------- 584 (674)
Q Consensus 530 ~~~~f-----~~~~P~d~~~~G--~Dii~~w~~~~~~~~~~----~~~~~Pf~~v~~hg~v~d~------~G-------- 584 (674)
....| ++|+|+|++++| |.++|..+++++.-.+. .....||+.++.+|+|+.. .|
T Consensus 513 ~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev 592 (876)
T KOG0435|consen 513 PEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEV 592 (876)
T ss_pred cccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHh
Confidence 64444 568999999999 67788888888654332 2346899999999998731 11
Q ss_pred -----------------------ccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHH
Q 005849 585 -----------------------RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLW 640 (674)
Q Consensus 585 -----------------------~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~ 640 (674)
+|||||++|+|+|.|++.+||+|.+|+|++...+ +++++|++..|.+..+++.|+|
T Consensus 593 ~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw 672 (876)
T KOG0435|consen 593 QQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIW 672 (876)
T ss_pred hhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHH
Confidence 8999999999999999999999999999998888 9999999999999999999999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
++...++..
T Consensus 673 ~l~~~~~~a 681 (876)
T KOG0435|consen 673 ALVSQILQA 681 (876)
T ss_pred HHHHHHHHH
Confidence 998776654
No 30
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2e-74 Score=618.44 Aligned_cols=336 Identities=35% Similarity=0.686 Sum_probs=307.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcC-CCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g-~~~~~l~~e~f~~ 168 (674)
++|+|.+|||||||+|||||+++++++|+++||+||+|++|++++|||+||+|+|.++++.+...+ ..++++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999988887653222 2346788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
.|+++++++.+.+++++++||++.||++.+.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988866
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+++
T Consensus 144 -----------------------------------------------------------------------------~v~ 146 (338)
T cd00818 144 -----------------------------------------------------------------------------PLI 146 (338)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 235
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhH
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
+++++||||+++++++++++.+++ ++|+|+..++++.+||++++|||||||++||+|+|+|++++ ++..++
T Consensus 147 ~~~~~qwf~~l~~~~~~l~~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~-~~~~~~------ 217 (338)
T cd00818 147 YRATPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCED-CGEVLV------ 217 (338)
T ss_pred EEecCeEEEEcHHHHHHHHHHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecC-CCeEEE------
Confidence 677899999999999999999974 78899999999999999999999999999999999999875 233222
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~ 568 (674)
.++++|+||||||++++++..+++.+. .+|+++||+|++++|+||+++|+..+++.++++.+..
T Consensus 218 ---------------~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 218 ---------------RRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred ---------------ecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 357899999999999999998998765 6799999999999999999999999999888888889
Q ss_pred CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 569 Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
||+++++||++++.+|+|||||+||+|+++|++++||+|++||||++.++ .+|++|
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999988999999999999999999999999999999999887 888875
No 31
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-73 Score=614.82 Aligned_cols=575 Identities=23% Similarity=0.383 Sum_probs=455.1
Q ss_pred CCCCh--HHHHHHHHHHHhCCCCCCCCC----CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 61 KTFDF--TSEERIYNWWESQGYFKPNFE----RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 61 ~~~~~--~~E~~~~~~W~~~~~f~~~~~----~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
..+|. ++|+++|++|+..++|+.+.. .++++|++++|.||+||.||+||+++....|+.+-|+||+|++|+|++
T Consensus 9 ar~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 34554 899999999999999998763 247889999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHH---cCCCcc------------------------------------------------ccCH
Q 005849 135 GTDHAGIATQLVVEKMLAA---EGIKRV------------------------------------------------ELSR 163 (674)
Q Consensus 135 G~D~~Gl~~e~~ve~~~~~---~g~~~~------------------------------------------------~l~~ 163 (674)
|++|.|+||..-+.+..++ .|.++. .+.+
T Consensus 89 gFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~d 168 (1080)
T KOG0437|consen 89 GFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPD 168 (1080)
T ss_pred ccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCH
Confidence 9999999986544332211 111110 1122
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--hhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 164 DEFTK--RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 164 e~f~~--~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++..+ ...+|..++.-...++|+++|..+||+|+|.|+| |.|..+|+|+|.+|.+.|.|..|++...|||++++++
T Consensus 169 eEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpC 248 (1080)
T KOG0437|consen 169 EEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPC 248 (1080)
T ss_pred HHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcc
Confidence 22221 2347888888888999999999999999999875 5689999999999999999999999999999999999
Q ss_pred ccchhhccCCCCeeEEEEEeec-------------CCCceEEEeecCCCcccCCceEEeCCCCch---------------
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVA-------------GRSDFLTIATTRPETLFGDVALAVNPQDEH--------------- 291 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~-------------~~~~~l~v~Tt~Petl~~~~av~v~p~~~~--------------- 291 (674)
.||+..-+|.+++.-|.-.+++ +...+++++|.|||||+|.|+++|+|+-++
T Consensus 249 mDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t 328 (1080)
T KOG0437|consen 249 MDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIAT 328 (1080)
T ss_pred cccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEee
Confidence 9999999999998876654432 245899999999999999999999999641
Q ss_pred --------h------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH--
Q 005849 292 --------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-- 343 (674)
Q Consensus 292 --------y------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~-- 343 (674)
| .+++|..+..|++--..+.++|..-|..+.|||+|.++|+.+|+||...+.
T Consensus 329 ~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~ 408 (1080)
T KOG0437|consen 329 ERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLK 408 (1080)
T ss_pred hHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhh
Confidence 1 246777788888767889999999999999999999999999999998854
Q ss_pred -----hC----------CCeeeecc------------------------------------CCCcccccccccCCCCHHH
Q 005849 344 -----LG----------LPILNVMN------------------------------------KDGTLNEVAGLFRGLDRFE 372 (674)
Q Consensus 344 -----~~----------l~~~~~~~------------------------------------~~G~~~e~~g~~~g~~~~~ 372 (674)
|| +|+|.+.. .+|+| -.|+|.|.+|.+
T Consensus 409 kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m--lig~y~G~KVe~ 486 (1080)
T KOG0437|consen 409 KKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM--LIGKYKGEKVED 486 (1080)
T ss_pred hcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE--EEeccccccHHh
Confidence 23 35555431 02222 248899999999
Q ss_pred HHHHHHHHHHHcCCccc-ccccccccccccCCCCcccceeeccccccchH--HHHHHHHHHHhCCceEechhHHHHHHHH
Q 005849 373 ARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHW 449 (674)
Q Consensus 373 ar~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~--~~~~~~~~i~~~~~~~~P~~~~~~~~~~ 449 (674)
++.+|..+|.+.|.+++ .|+.. ++-.|||+.++..+++||||++++ +++.+.+++++ ++.+.+..|+.|+.-
T Consensus 487 ~K~~i~~~li~~g~a~~y~EPEk---qVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~fE~t 561 (1080)
T KOG0437|consen 487 AKPKIKTDLIETGDALKYNEPEK---QVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNGFEDT 561 (1080)
T ss_pred hhhHHHHHHHhcccceeecCcch---hhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hhccCHHHHHHHHHH
Confidence 99999999999999987 55544 456799999999999999999976 88899999984 777788889999999
Q ss_pred HhcCCCceeecccCCCcccce---eeecCCccc--EEEeCChhHHHHHHhhhcCCC-----cceEecC-CeeeeeccCCc
Q 005849 450 LSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKN-----VEIYQDP-DVLDTWFSSAL 518 (674)
Q Consensus 450 l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-dvld~Wfds~~ 518 (674)
|++|..|.|||+.+.|++||| |.+++++|+ |+...++..++.+. -+|.. +...+.+ +|+|.-|--..
T Consensus 562 LdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d--~~g~~~~plgi~~~QMtdeVwdYvF~~~~ 639 (1080)
T KOG0437|consen 562 LDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRD--LYGKVEGPLGIKPDQMTDEVWDYVFLNEP 639 (1080)
T ss_pred HHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHh--hccCCcccCCCChhhcCHHHHHHhhccCC
Confidence 999999999999999999998 666666555 44444555554442 22221 1222222 35554444332
Q ss_pred cchhccCCCCC----ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh--cCCCCcceeEeeeeEeCCCCccccccCC
Q 005849 519 WPFSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF--TGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 519 ~~~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~--~~~~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
.+- ....+.+ -+.+|++|||.|++++|+|++..|+..+++...++ ..++| +.+.+||+++ ++++|||||.|
T Consensus 640 ~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsEKMSKSTG 716 (1080)
T KOG0437|consen 640 YPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSEKMSKSTG 716 (1080)
T ss_pred CCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecchhhccccC
Confidence 211 1222221 16889999999999999999998877777655554 46789 8999999999 89999999999
Q ss_pred CccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005849 593 NVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 593 N~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~ 650 (674)
|+.+.++.+++||+|+.|+.|+.+.. ..|.||..... ...+.||++...++..-+
T Consensus 717 NfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~A---nAaILRLyt~~ew~eEm~ 772 (1080)
T KOG0437|consen 717 NFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANA---NAAILRLYTYVEWIEEMC 772 (1080)
T ss_pred CeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcc---cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 89999987654 455677777777765433
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=4.3e-71 Score=628.36 Aligned_cols=382 Identities=30% Similarity=0.444 Sum_probs=329.7
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++|||||||.|||||+++++.+|+++||+||+|++|++++|+|+||++++.++ +++|+++.
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a----~~~g~~~~------------ 64 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKA----EQEGLTPK------------ 64 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHH----HHcCCCHH------------
Confidence 58999999999999999999999999999999999999999999999999975554 45687765
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~ 251 (674)
++++++.+.+++++++|||++|+ ...|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|.+|+
T Consensus 65 e~~~~~~~~~~~~l~~LgI~~D~--~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~------ 136 (530)
T TIGR00398 65 ELVDKYHEEFKDDWKWLNISFDR--FIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE------ 136 (530)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc------
Confidence 56788999999999999999883 2348999999999999999999999999999999999999999986542
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCC
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 331 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P 331 (674)
| .||
T Consensus 137 -----------------------------------------------------------------------g-----~cp 140 (530)
T TIGR00398 137 -----------------------------------------------------------------------G-----TCP 140 (530)
T ss_pred -----------------------------------------------------------------------C-----CCC
Confidence 1 267
Q ss_pred CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 332 ~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
.|+.. |.+|..||+||.+ .++.++.+|+|+|||+++|++.
T Consensus 141 ~c~~~----------------~~~g~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~~ 180 (530)
T TIGR00398 141 KCGSE----------------DARGDHCEVCGRH------------------------LEPTELINPRCKICGAKPELRD 180 (530)
T ss_pred CCCCc----------------ccccchhhhcccc------------------------CCHHHhcCCccccCCCcceEEe
Confidence 77664 4689999999853 4666788999999999999999
Q ss_pred eccccccchHHHHHHHHHHHhCC-ceEechhHHHHHHHHHhc-CCCceeecccC-CCcccceeeecCCcccEEEeCChhH
Q 005849 412 SKQWFVTMEPLAEKALHAVEKGE-LTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 412 ~~qwfi~~~~~~~~~~~~i~~~~-~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~-WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
++|||++++++++++++.+++++ ..+.|+..++++.+||++ ++|||||||+. ||+|+|.|
T Consensus 181 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~----------------- 243 (530)
T TIGR00398 181 SEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND----------------- 243 (530)
T ss_pred cceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC-----------------
Confidence 99999999999999999998543 555688899999999987 99999999999 99999964
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcc-----eeEEeehhhhhHHHHHHHHhhh
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d-----~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+++|++||||+.+.|++..+++.....+|+++||.| ++++|+||+++|.....++..+
T Consensus 244 -----------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~ 306 (530)
T TIGR00398 244 -----------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMG 306 (530)
T ss_pred -----------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHh
Confidence 146999999999999988777755446799999999 9999999999864443222222
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHHH--HHHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~~--~~~~~kl~ 640 (674)
+ +..|++++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++.++ .+|++|+++.+... .+++++++
T Consensus 307 ~-~~~~~~~~~~~g~v~~-~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~ 384 (530)
T TIGR00398 307 L-GLPLPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLG 384 (530)
T ss_pred C-CCCCCCEEEeeccEEE-CCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 2356799999999995 599999999999999999999999999999999876 99999999999874 67889999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
|+++++++.
T Consensus 385 n~~~r~~~~ 393 (530)
T TIGR00398 385 NLLNRTLGF 393 (530)
T ss_pred HHHHHHHHH
Confidence 998776543
No 33
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-71 Score=632.92 Aligned_cols=383 Identities=25% Similarity=0.382 Sum_probs=322.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHH-HHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~-~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.+++|+|+||++++.+++ ++|+++.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~----~~g~~~~--------- 69 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAK----KEGVTPQ--------- 69 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHH----HcCCCHH---------
Confidence 579999999999999999999997 99999999999999999999999999999766654 4688765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.|++++++|||++|+ .+.|++++|.+.++++|.+|+++|+||++.++++|||.|+|+|++..|.
T Consensus 70 ---~~~~~~~~~~~~~~~~l~i~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--- 141 (556)
T PRK12268 70 ---ELADKYHEEHKEDFKKLGISYDL--FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHcCCcCCC--CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---
Confidence 67789999999999999998773 4569999999999999999999999999999999999999999974331
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
|
T Consensus 142 --------------------------------------------------------------------------g----- 142 (556)
T PRK12268 142 --------------------------------------------------------------------------G----- 142 (556)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 1
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.||.|+.. +.+|.+||.||.+ .++.+...|+|++||++++
T Consensus 143 ~cp~c~~~----------------~~~G~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e 182 (556)
T PRK12268 143 TCPYCGYE----------------GARGDQCDNCGAL------------------------LDPTDLINPRSKISGSTPE 182 (556)
T ss_pred cCCCCCCc----------------ccCCchhhhcccc------------------------CChHHhcCCccccCCCcCe
Confidence 25655432 4589999999863 1233455699999999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
++.++||||++++++++++++++ ++.++|+..++++.+||+ +++|||||||++||+||| |.+.
T Consensus 183 ~~~~~qwF~~l~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~------------- 246 (556)
T PRK12268 183 FRETEHFFLDLPAFAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF------------- 246 (556)
T ss_pred EEecceEEEEhHHHHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------
Confidence 99999999999999999999997 478999999999999998 899999999999999999 5542
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCC-CCC--ChhhhhhcC----CcceeEEeehhhhhHHHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDV--SADDFKKFY----PTTMLETGHDILFFWVARMVMM 560 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~-~~~--~~~~f~~~~----P~d~~~~G~Dii~~w~~~~~~~ 560 (674)
+..++|+|||+...|.+..+. ... ...+|+.|| |.+++++|+||++||.....++
T Consensus 247 ------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~ 308 (556)
T PRK12268 247 ------------------EGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAM 308 (556)
T ss_pred ------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHH
Confidence 246899999988777654322 221 124688788 7789999999999886544333
Q ss_pred hhhhc--CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHH
Q 005849 561 GIEFT--GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAF 635 (674)
Q Consensus 561 ~~~~~--~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~ 635 (674)
..+.. .++| +++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++ .+|++|+++.+.. +.++
T Consensus 309 l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~ 386 (556)
T PRK12268 309 LLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSEL 386 (556)
T ss_pred HHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHh
Confidence 33332 4567 6999999998 5999999999999999999999999999999998877 8999999999865 6678
Q ss_pred HHHHHHHHHHHHh
Q 005849 636 TNKLWNAGKFILQ 648 (674)
Q Consensus 636 ~~kl~n~~~f~~~ 648 (674)
+++++|+++++..
T Consensus 387 ~~~l~n~~~r~~~ 399 (556)
T PRK12268 387 ADKYGNLVNRVLS 399 (556)
T ss_pred hhhHHHHHHHHHH
Confidence 8999998665443
No 34
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-69 Score=625.03 Aligned_cols=356 Identities=27% Similarity=0.399 Sum_probs=312.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|+|||||.|||||+++++++|+++||+||+|++|++++|+|+||++++. .++++|++++
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~----~A~~~g~~~~---------- 69 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQ----AAEKAGKTPQ---------- 69 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHH----HHHHcCCCHH----------
Confidence 57999999999999999999999999999999999999999999999999998644 4567798876
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.|+++|++|||++| ..+.|+++.|.+.++++|.+|+++|+||++.+.++|||.|+++|++.|+..
T Consensus 70 --e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~--- 142 (648)
T PRK12267 70 --EYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD--- 142 (648)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc---
Confidence 5678999999999999999988 223489999999999999999999999999999999999999999754310
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 143 -------------------------------------------------------------------------------- 142 (648)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.|+|++||+++++
T Consensus 143 -------------------------------------------------------------------~~~c~~cg~~~e~ 155 (648)
T PRK12267 143 -------------------------------------------------------------------GGKCPDCGREVEL 155 (648)
T ss_pred -------------------------------------------------------------------CCcCCCCCCcCeE
Confidence 1579999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHH-HHHhc-CCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~-~~l~~-l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+.++|||++++++++++++.++++...+.|+..++.+. +||++ ++|||||||+ .||+|+|.+
T Consensus 156 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~--------------- 220 (648)
T PRK12267 156 VKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD--------------- 220 (648)
T ss_pred EecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC---------------
Confidence 99999999999999999999986555567999999888 99986 9999999997 699999941
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
+++|+||||||+++|++..+|+.....+|+++||.|++++|+||++||.....++-+++ +
T Consensus 221 -------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~-~ 280 (648)
T PRK12267 221 -------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMAL-G 280 (648)
T ss_pred -------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhC-C
Confidence 25799999999999999999986555679999999999999999997765433332222 3
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHHHHH
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAG 643 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~n~~ 643 (674)
..|++++++||+++ .+|+|||||+||+|+|.|++++||+|++||||+...+ .+|.+|+++.+.. +..++++|+|++
T Consensus 281 ~~~p~~v~~hg~l~-~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~ 359 (648)
T PRK12267 281 LPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLL 359 (648)
T ss_pred CCCCcEEEecceEE-ECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 55779999999999 5899999999999999999999999999999998777 9999999999976 677889999998
Q ss_pred HHHHhc
Q 005849 644 KFILQN 649 (674)
Q Consensus 644 ~f~~~~ 649 (674)
.+++..
T Consensus 360 ~R~~~~ 365 (648)
T PRK12267 360 NRTVAM 365 (648)
T ss_pred HHHHHH
Confidence 876654
No 35
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-68 Score=593.90 Aligned_cols=383 Identities=28% Similarity=0.434 Sum_probs=339.6
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
.++|+|++|+|||||+|||||+++++.+|+++||+||+|++|+|+.|+|+||++|+.+ +.++|++|+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~----A~~~g~tP~--------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELK----AEKEGITPQ--------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHH----HHHcCCCHH---------
Confidence 4689999999999999999999999999999999999999999999999999996554 567799998
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhcc
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (674)
+++++++..++++++.|+|++| |.| |+++.|.+.+|++|.+|+++|+||.+...+.||+.|++++.|.+|+
T Consensus 71 ---el~d~~~~~~~~~~~~l~IsfD~F~r---Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 71 ---ELVDKNHEEFKELFKALNISFDNFIR---TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred ---HHHHHHHHHHHHHHHHhCCccccccc---CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--
Confidence 5678899999999999999999 666 9999999999999999999999999999999999999999986653
Q ss_pred CCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 248 ~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
|
T Consensus 143 ---------------------------------------------------------------------------g---- 143 (558)
T COG0143 143 ---------------------------------------------------------------------------G---- 143 (558)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 2
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
.||.|+-+ +..|..||+||.. ..+.....|+|+.||..+
T Consensus 144 -~cp~cg~~----------------~arGD~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p 182 (558)
T COG0143 144 -TCPKCGGE----------------DARGDQCENCGRT------------------------LDPTELINPVCVISGATP 182 (558)
T ss_pred -cCCCcCcc----------------ccCcchhhhccCc------------------------CCchhcCCCeeEeeCCCc
Confidence 36666644 3689999999943 456666789999999999
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec-ccCCCcccceeeecCCcccEEEeCC
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR-q~~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
+++.+++||++++++.+++++.++++.-.+.|++.++.+.+||+ +|+||+||| ...||+|+|- .
T Consensus 183 ~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~----~---------- 248 (558)
T COG0143 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG----D---------- 248 (558)
T ss_pred ccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCC----C----------
Confidence 99999999999999999999999987777899999999999996 599999999 8999999991 1
Q ss_pred hhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCC--CChhhhhhcCCcc----eeEEeehhhhhHHHHHHH
Q 005849 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILFFWVARMVM 559 (674)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~--~~~~~f~~~~P~d----~~~~G~Dii~~w~~~~~~ 559 (674)
...|++||||+.+.|++.++... ....+|++|||.| +++.|+||++||-...-+
T Consensus 249 --------------------p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPa 308 (558)
T COG0143 249 --------------------PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPA 308 (558)
T ss_pred --------------------CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHH
Confidence 35799999999999999998875 3447899999999 999999999976554444
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFT 636 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~ 636 (674)
+-++.....| +++++||+++ .+|+|||||+||+|+|.++++.||+|++||||+...+ .+|.+||++.+.+ +..+.
T Consensus 309 mL~~~~~~lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~ 386 (558)
T COG0143 309 MLMAAGLPLP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLA 386 (558)
T ss_pred HHHhCCCCCC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4344444567 8999999998 8999999999999999999999999999999999999 9999999999988 78899
Q ss_pred HHHHHHHHHHHh
Q 005849 637 NKLWNAGKFILQ 648 (674)
Q Consensus 637 ~kl~n~~~f~~~ 648 (674)
+++.|++++.++
T Consensus 387 n~lgNl~~R~~~ 398 (558)
T COG0143 387 NKLGNLANRTLG 398 (558)
T ss_pred HHHHHHHHHHHH
Confidence 999999887666
No 36
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-67 Score=611.46 Aligned_cols=381 Identities=24% Similarity=0.367 Sum_probs=322.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||++++.++ +++|+++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A----~~~g~~p~---------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA----EKEGITPE---------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHH----HHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999976655 44688876
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++|||++|+ .+.|++++|.+.++++|.+|+++|+||++.++++|||.|+++|++.+|+
T Consensus 68 --e~~~~~~~~~~~~~~~l~i~~d~--f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---- 139 (673)
T PRK00133 68 --ELIARYHAEHKRDFAGFGISFDN--YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK---- 139 (673)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCC--CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee----
Confidence 56789999999999999999883 3458999999999999999999999999999999999999999984331
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
| .
T Consensus 140 -------------------------------------------------------------------------g-----~ 141 (673)
T PRK00133 140 -------------------------------------------------------------------------G-----T 141 (673)
T ss_pred -------------------------------------------------------------------------c-----c
Confidence 2 2
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
||.|+.. |.+|..|+.||.+ .++.+...|+|.+||+++++
T Consensus 142 cp~C~~~----------------d~~g~~ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e~ 181 (673)
T PRK00133 142 CPKCGAE----------------DQYGDNCEVCGAT------------------------YSPTELINPKSAISGATPVL 181 (673)
T ss_pred cCCCCCc----------------ccCCchhhhcccc------------------------CChHhhcCCccccCCCcceE
Confidence 7766654 3589999999953 23334566899999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeecccCC-CcccceeeecCCcccEEEeCChh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~~W-G~piP~~~~~~~~~~~~~~~~~~ 487 (674)
+.++|||++++++++++++.+++ +..| |+..++.+.+||+ +++|||||||+.| |+|+|. .
T Consensus 182 ~~~~~~f~~l~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~----~------------ 243 (673)
T PRK00133 182 KESEHFFFKLPRFEEFLKEWITR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG----A------------ 243 (673)
T ss_pred EecceEEEEHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC----C------------
Confidence 99999999999999999999964 3455 8999999999996 6999999999999 999992 1
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCC-ChhhhhhcCCcc-----eeEEeehhhhhHHHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDV-SADDFKKFYPTT-----MLETGHDILFFWVARMVMM 560 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~-~~~~f~~~~P~d-----~~~~G~Dii~~w~~~~~~~ 560 (674)
+.+|++||||+.++|++.. +|+.. +...|+.||+.+ +++.|+||++||.....++
T Consensus 244 ------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~ 305 (673)
T PRK00133 244 ------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAM 305 (673)
T ss_pred ------------------CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHH
Confidence 2579999999999998876 56654 335699999433 8999999999653332222
Q ss_pred hhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-C-CccccCHHHHHH--HHHHH
Q 005849 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--NKAFT 636 (674)
Q Consensus 561 ~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~-~d~~fs~~~l~~--~~~~~ 636 (674)
-++..-.+| +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++.++ . +|.+|+++.+.. +.+++
T Consensus 306 l~a~g~~lP-~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~ 383 (673)
T PRK00133 306 LEGAGYRLP-TNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELV 383 (673)
T ss_pred HHhCCCCCC-CEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 222222445 99999999996 999999999999999999999999999999998887 7 899999999865 67789
Q ss_pred HHHHHHHHHHHh
Q 005849 637 NKLWNAGKFILQ 648 (674)
Q Consensus 637 ~kl~n~~~f~~~ 648 (674)
++++|+++++..
T Consensus 384 ~~l~Nl~~R~~~ 395 (673)
T PRK00133 384 GKVVNFASRTAG 395 (673)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 37
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=9.9e-67 Score=607.33 Aligned_cols=386 Identities=20% Similarity=0.278 Sum_probs=325.5
Q ss_pred CCCCCCCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCH
Q 005849 85 FERGSDPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163 (674)
Q Consensus 85 ~~~~~~~f~i~~~pP~~nG~LHlGH~~~-~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~ 163 (674)
+..+.++|+|++|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||++++.++ .+.|++|+
T Consensus 12 ~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A----~~~g~~p~---- 83 (801)
T PLN02610 12 PIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKA----LEENCTPK---- 83 (801)
T ss_pred CCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHH----HHcCCCHH----
Confidence 3345678999999999999999999996 67799999999999999999999999999976554 55688877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccch
Q 005849 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 243 (674)
Q Consensus 164 e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~E 243 (674)
++++++++.+++++++|||++| +.+.|++++|.+.||++|.+|+++|+||++.+.++|||.|+++|+|..
T Consensus 84 --------e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~ 153 (801)
T PLN02610 84 --------EICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRL 153 (801)
T ss_pred --------HHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHH
Confidence 6678899999999999999988 334499999999999999999999999999999999999999999854
Q ss_pred hhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCC
Q 005849 244 VEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFG 323 (674)
Q Consensus 244 v~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~G 323 (674)
|+ |
T Consensus 154 v~-----------------------------------------------------------------------------G 156 (801)
T PLN02610 154 VE-----------------------------------------------------------------------------G 156 (801)
T ss_pred hc-----------------------------------------------------------------------------C
Confidence 42 2
Q ss_pred CcceeeCCC--CChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccccc
Q 005849 324 TGVLKISPG--HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ 401 (674)
Q Consensus 324 TG~v~~~P~--h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~ 401 (674)
.||. |+.+ +.+|..||.||.+ .++.++..|+|.
T Consensus 157 -----~CP~~~C~~~----------------~a~Gd~Ce~Cg~~------------------------~~p~eLi~p~c~ 191 (801)
T PLN02610 157 -----TCPTEGCNYD----------------SARGDQCEKCGKL------------------------LNPTELIDPKCK 191 (801)
T ss_pred -----cCCccccCcc----------------ccccchhhhcccc------------------------CChhhhcCCccc
Confidence 2676 5544 4689999999854 566788899999
Q ss_pred CCCCcccceeeccccccchHHHHHHHHHHHhCCceEechh---HHHHHHHHHh-cCCCceeecccCCCcccceeeecCCc
Q 005849 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER---FEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKE 477 (674)
Q Consensus 402 r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~---~~~~~~~~l~-~l~DW~iSRq~~WG~piP~~~~~~~~ 477 (674)
+||.+++.+.++|||++++++++.+++.++++. +.|+. ......+||+ .|+||||||+..||+|+|.- +
T Consensus 192 ~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~---~-- 264 (801)
T PLN02610 192 VCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE---K-- 264 (801)
T ss_pred CCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC---C--
Confidence 999999999999999999999999999998654 33443 3445668995 69999999999999999941 0
Q ss_pred ccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCCChhhhhhcCCc--c---eeEEeehhhh
Q 005849 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDILF 551 (674)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~~~~~f~~~~P~--d---~~~~G~Dii~ 551 (674)
-+..|++||||+.+.|++.. +|. .+|++|||. | +++.|+||++
T Consensus 265 ---------------------------~~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~ 313 (801)
T PLN02610 265 ---------------------------YKDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVP 313 (801)
T ss_pred ---------------------------CCCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecch
Confidence 03579999999999998876 563 358889975 6 8999999999
Q ss_pred hHHHHHHHHhhhhcCC--CCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCC-CCccccCHH
Q 005849 552 FWVARMVMMGIEFTGS--VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIE 627 (674)
Q Consensus 552 ~w~~~~~~~~~~~~~~--~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~-~~d~~fs~~ 627 (674)
||.....++-++.... .| +++++||++. .+|+|||||+||+|+|.++++. ||+|++||||++..+ .+|.+||++
T Consensus 314 fH~i~wPa~L~a~g~~~~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~ 391 (801)
T PLN02610 314 FHTVMFPSTLLGTGENWTMM-KTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 391 (801)
T ss_pred hHHHHHHHHHHhCCCCcCCC-CEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHH
Confidence 8755554443333322 44 8999999997 8999999999999999999996 999999999999988 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhcC
Q 005849 628 RLTA--NKAFTNKLWNAGKFILQNL 650 (674)
Q Consensus 628 ~l~~--~~~~~~kl~n~~~f~~~~~ 650 (674)
.|.. +.++++.|+|++.+++..+
T Consensus 392 ~f~~~~NsdL~n~lGNlv~R~~~~i 416 (801)
T PLN02610 392 DLQAKLNSELLNNLGNFINRVLSFI 416 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 6678999999877766543
No 38
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.7e-67 Score=591.47 Aligned_cols=355 Identities=29% Similarity=0.432 Sum_probs=313.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|++|||||||.|||||+++++.+|+++||+||+|++|.+++|+|+||.+++ +.++++|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~----~~a~~~g~~~~---------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQ----RKAEEAGISPQ---------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHH----HHHHHcCCCHH----------
Confidence 4799999999999999999999999999999999999999999999999999854 44567788875
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.|+++|++|||.+| ..+.|+++.|.+.++++|.+|+++|++|++.+.|+||+.|+++|++.|+..
T Consensus 67 --~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~--- 139 (511)
T PRK11893 67 --ELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE--- 139 (511)
T ss_pred --HHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC---
Confidence 5678899999999999999888 223499999999999999999999999999999999999999999865410
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 140 -------------------------------------------------------------------------------- 139 (511)
T PRK11893 140 -------------------------------------------------------------------------------- 139 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
+ .|+|+|||+++++
T Consensus 140 --------------------------------------------------------------~----~p~~~~~~~~~~~ 153 (511)
T PRK11893 140 --------------------------------------------------------------D----GYRCPPTGAPVEW 153 (511)
T ss_pred --------------------------------------------------------------C----CCCCCCCCCcceE
Confidence 0 1789999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec-ccCCCcccceeeecCCcccEEEeCChh
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR-q~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
+.++|||++++.+++++.+.++++...+.|+..++.+.+|++ +++|||||| |+.||+|+|.+
T Consensus 154 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~---------------- 217 (511)
T PRK11893 154 VEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD---------------- 217 (511)
T ss_pred EecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC----------------
Confidence 999999999999999999999764444679999999999997 599999999 99999999941
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCCh---hhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~ 564 (674)
+.+++||||||+++|++..++|.+.. ++|.++||.|++++|+||+++|....+++..++
T Consensus 218 ------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~ 279 (511)
T PRK11893 218 ------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAA 279 (511)
T ss_pred ------------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhC
Confidence 25799999999999999988876532 468999999999999999999988887777776
Q ss_pred cCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHHH
Q 005849 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWN 641 (674)
Q Consensus 565 ~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~n 641 (674)
..+.| +++++||+++ .+|+|||||+||+|++.|++++||+|++||||++.++ ++|++|+++.+.. ...+.+.++|
T Consensus 280 ~~~~p-~~~~~~g~v~-~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n 357 (511)
T PRK11893 280 GLPLP-KRVFAHGFLT-LDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGN 357 (511)
T ss_pred CCCCC-CEEEeeccEE-ECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66778 9999999998 5999999999999999999999999999999999866 9999999999976 4457788888
Q ss_pred HHHHHH
Q 005849 642 AGKFIL 647 (674)
Q Consensus 642 ~~~f~~ 647 (674)
++.++.
T Consensus 358 ~~~r~~ 363 (511)
T PRK11893 358 LAQRTL 363 (511)
T ss_pred HHHHHH
Confidence 876443
No 39
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.8e-65 Score=544.98 Aligned_cols=311 Identities=39% Similarity=0.741 Sum_probs=285.4
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+|++.++++.. +.+.....+++|.+.|
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999988877654 3344445578999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
+++++++.+.|+++|++|||++||++.+.|++++|.+.++++|.+|+++|+||++.++|
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v--------------------- 136 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV--------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---------------------
Confidence 99999999999999999999999999999999999999999999999999999997654
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+
T Consensus 137 -------------------------------------------------------------------------------~ 137 (312)
T cd00668 137 -------------------------------------------------------------------------------R 137 (312)
T ss_pred -------------------------------------------------------------------------------E
Confidence 2
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (674)
..+|||++++++++++++.++++ ++.|+..++++.+||++..|||||||++||+|+|
T Consensus 138 ~~~~~f~~~~~l~~~~~~~~~~~--~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--------------------- 194 (312)
T cd00668 138 ITEQWFFDMPKFKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP--------------------- 194 (312)
T ss_pred eeeeEEEEcHHHHHHHHHHHhcC--CcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC---------------------
Confidence 35689999999999999999854 4899999999999999877999999999999999
Q ss_pred HHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCc
Q 005849 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (674)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf 570 (674)
++|+|+||||+++|+++.+++.+. ..|+++||.|++++|+||+++|+..+++++.++.+..|+
T Consensus 195 ----------------~~~i~~Wfds~~~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~ 257 (312)
T cd00668 195 ----------------EDVFDVWFDSGIGPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPP 257 (312)
T ss_pred ----------------cccccchhhccHHHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCc
Confidence 379999999999999999888764 578999999999999999999999999999888877788
Q ss_pred ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 571 ~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+++++||++++.+|+|||||+||+|+++|++++||+|++||||++.++ .+|.+|
T Consensus 258 ~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 258 KNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred ceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 999999999977779999999999999999999999999999999886 888876
No 40
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=2.2e-64 Score=572.26 Aligned_cols=356 Identities=24% Similarity=0.347 Sum_probs=304.0
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||++|+.. ++++|+++.
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~----A~~~g~~p~--------- 134 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATS----AAANGRNPP--------- 134 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHH----HHHcCCChH---------
Confidence 6789999999999999999999999999999999999999999999999999996544 566788765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.+++++++|||++| ..+.|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.|+..
T Consensus 135 ---e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~-- 207 (616)
T PLN02224 135 ---EHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE-- 207 (616)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC--
Confidence 4567788889999999999666 556699999999999999999999999999999999999998887644310
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 208 -------------------------------------------------------------------------------- 207 (616)
T PLN02224 208 -------------------------------------------------------------------------------- 207 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.+.|..||.+++
T Consensus 208 --------------------------------------------------------------------~~~~~~~~~~~~ 219 (616)
T PLN02224 208 --------------------------------------------------------------------NNCCPVHQMPCV 219 (616)
T ss_pred --------------------------------------------------------------------CCCCCCCCCcce
Confidence 023667899999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
++.+++||++++++++.+.+.++++.-.+.|+..++.+.+||+ +|+||||||++ .||+|+|. +
T Consensus 220 ~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~----~----------- 284 (616)
T PLN02224 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD----D----------- 284 (616)
T ss_pred EEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC----C-----------
Confidence 9999999999999999999999865545679988899999996 59999999986 79999993 0
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCC---hhhhhhcCCcceeEEeehhhhhHHHHHHHHhhh
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~---~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+.+|++||||+.+.|++..++.... ...|..+||.|+++.|+||++||.....++-++
T Consensus 285 -------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~ 345 (616)
T PLN02224 285 -------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMS 345 (616)
T ss_pred -------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHH
Confidence 2589999999999999988775432 112556899999999999999755444443333
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~kl~ 640 (674)
..-.+| +++++||++. .+|+|||||+||+|+|.|++++||+|++||||++..+ .+|.+|+++.+.. +.++++.++
T Consensus 346 ~g~~~P-~~i~~~g~l~-~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 346 AGLELP-KMVFGHGFLT-KDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred CCCCCC-cEEEecccEe-cCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 333456 8999999975 8999999999999999999999999999999999888 9999999999765 677899999
Q ss_pred HHHHHHHh
Q 005849 641 NAGKFILQ 648 (674)
Q Consensus 641 n~~~f~~~ 648 (674)
|++.+++.
T Consensus 424 Nll~R~l~ 431 (616)
T PLN02224 424 NLLNRTLG 431 (616)
T ss_pred HHHHHHHH
Confidence 99877654
No 41
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=5.8e-66 Score=561.17 Aligned_cols=378 Identities=29% Similarity=0.471 Sum_probs=305.5
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
|+|++|+|||||.|||||+++++.+|+++||+||+|++|+++.|+|+||++++ ..+.++|++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~----~~A~~~g~~p~------------ 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIE----TAAEKQGIDPE------------ 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHH----HHHHHTTS-HH------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHH----HHHHHcCCCHH------------
Confidence 78999999999999999999999999999999999999999999999999954 45567799987
Q ss_pred HHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
++++++++.|+++++++||++| |.| |.++.|.++|+++|.+|+++|+||+++..++||+.|+++++|.+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~I~~D~F~r---Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~----- 136 (391)
T PF09334_consen 65 EFCDKYSAKFKELLEALNISYDRFIR---TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE----- 136 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT---SEEEE---TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-----
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceeC---CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-----
Confidence 6778999999999999999999 554 8999999999999999999999999999999999999999987763
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
..|
T Consensus 137 -----------------------------------------------------------------------------g~C 139 (391)
T PF09334_consen 137 -----------------------------------------------------------------------------GTC 139 (391)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 126
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
|.|+.+ +..|..||+||.. .++.+...|+|..||++++.+
T Consensus 140 P~C~~~----------------~a~g~~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r 179 (391)
T PF09334_consen 140 PYCGSD----------------KARGDQCENCGRP------------------------LEPEELINPVCKICGSPPEVR 179 (391)
T ss_dssp TTT--S----------------SCTTTEETTTSSB------------------------EECCCSECEEETTTS-B-EEE
T ss_pred cCcCcc----------------ccCCCcccCCCCC------------------------cccccccCCccccccccCccc
Confidence 655532 3688899999843 566778899999999999999
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
.+++||++++++++.+.+.+++.+.. .|+..++.+.+||++ ++||+|||...||+|+|-
T Consensus 180 ~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~------------------- 239 (391)
T PF09334_consen 180 EEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPG------------------- 239 (391)
T ss_dssp EEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEETT-------------------
T ss_pred cceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceeec-------------------
Confidence 99999999999999999999865433 677888999999965 999999999999999991
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCC---CChhhhhhcCC-----cceeEEeehhhhhHHHHHHHHh
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD---VSADDFKKFYP-----TTMLETGHDILFFWVARMVMMG 561 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~---~~~~~f~~~~P-----~d~~~~G~Dii~~w~~~~~~~~ 561 (674)
.+..|++||||+.+.|++..+... .....|+++|+ .-+++.|+||++||.....++.
T Consensus 240 ---------------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l 304 (391)
T PF09334_consen 240 ---------------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAML 304 (391)
T ss_dssp ---------------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHH
T ss_pred ---------------cCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHH
Confidence 135799999999999999888775 23467888882 2299999999998766666555
Q ss_pred hhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--HHHHHHH
Q 005849 562 IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNK 638 (674)
Q Consensus 562 ~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~~~~~k 638 (674)
++..-.+| +++++||+++ .+|+|||||+||+|||.|++++||+|++||||++..+ .+|.+|+++.+.+ +..+.+.
T Consensus 305 ~a~~~~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~ 382 (391)
T PF09334_consen 305 LAAGLPLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANT 382 (391)
T ss_dssp HHCTB----SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCC
T ss_pred hcccCCCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 55444566 8999999998 8999999999999999999999999999999999888 9999999999977 4567899
Q ss_pred HHHHHHHHH
Q 005849 639 LWNAGKFIL 647 (674)
Q Consensus 639 l~n~~~f~~ 647 (674)
+.|++.+++
T Consensus 383 ~gNl~~R~~ 391 (391)
T PF09334_consen 383 LGNLVNRVL 391 (391)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHhccC
Confidence 999988764
No 42
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=4e-60 Score=504.98 Aligned_cols=313 Identities=29% Similarity=0.445 Sum_probs=272.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++.+ +.++|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~----a~~~g~~~~----------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQK----AEEEGVTPQ----------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHH----HHHcCCCHH-----------
Confidence 58999999999999999999999999999999999999999999999999996655 455688776
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
++++.+.+.|++++++|||.+| ..+.|.++.|.+.++++|++|.++|++|++...++|||.|+++|+
T Consensus 66 -e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~---------- 132 (319)
T cd00814 66 -ELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP---------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------
Confidence 5678899999999999999887 234488999999999999999999999999999999999887766
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+++
T Consensus 133 -----------------------------------------------------------------------------e~~ 135 (319)
T cd00814 133 -----------------------------------------------------------------------------EWR 135 (319)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 234
Q ss_pred eeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeeccc-CCCcccceeeecCCcccEEEeCChhH
Q 005849 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
.++|||++++++++.+++.++++...+.|+..++.+.+||++ ++|||||||. .||+|+|. .
T Consensus 136 ~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~----~------------- 198 (319)
T cd00814 136 EEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL----D------------- 198 (319)
T ss_pred eeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC----C-------------
Confidence 578999999999999999998776668999999999999986 9999999999 99999994 1
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCCh---hhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
+.+|++||||+.+.|++..+++.... ..|...+|.++++.|+||+++|.....++..++
T Consensus 199 -----------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~- 260 (319)
T cd00814 199 -----------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA- 260 (319)
T ss_pred -----------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC-
Confidence 25799999999999998888765432 246677899999999999998755444433333
Q ss_pred CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCcccc
Q 005849 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (674)
Q Consensus 566 ~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~f 624 (674)
+..|++.+++||+++ .+|+|||||+||+|+|.|++++||+|++||||++..+ .+|.+|
T Consensus 261 ~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 261 GLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred CCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 345569999999998 6899999999999999999999999999999999988 888887
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1e-56 Score=477.37 Aligned_cols=297 Identities=30% Similarity=0.505 Sum_probs=254.5
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+|+|++|||||||.+||||+++++++|+++||+|++|++|.+++|+|+||+|++..+ ++.|.++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a----~~~g~~~------------ 64 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAA----IKIGRDP------------ 64 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHH----HHcCCCH------------
Confidence 589999999999999999999999999999999999999999999999999965544 4457654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (674)
.++++++.+.+++++++|||++||.+.+.|++|+|.+.++++|.+|+++|+||++..+|+||
T Consensus 65 ~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------ 126 (314)
T cd00812 65 EDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------ 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------
Confidence 37889999999999999999999998889999999999999999999999999999999886
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeC
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~ 330 (674)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce
Q 005849 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (674)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~ 410 (674)
+
T Consensus 127 -------------------------------------------------------------------------------~ 127 (314)
T cd00812 127 -------------------------------------------------------------------------------K 127 (314)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeccccccc--hHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhH
Q 005849 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (674)
Q Consensus 411 ~~~qwfi~~--~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (674)
.++|||+++ +++++++.+.+++ +.+.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 128 ~~~~~f~~l~~~~~~~~l~~~l~~--~~~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------ 181 (314)
T cd00812 128 LLDQWFLKYSETEWKEKLLKDLEK--LDGWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------ 181 (314)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHh--cCcCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------
Confidence 257999999 9999999999985 34799999999999997 9999999999994
Q ss_pred HHHHHhhhcCCCcceEecCCeeeeeccCCccc---hhccCCCCC-------ChhhhhhcCCcceeEEeehhhhhHHHHHH
Q 005849 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP---FSTLGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMV 558 (674)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~---~~~~~~~~~-------~~~~f~~~~P~d~~~~G~Dii~~w~~~~~ 558 (674)
++|+|+||||.+.+ ......... .++.|++|||.|+++.|+||+++|...++
T Consensus 182 ------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 182 ------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR 243 (314)
T ss_pred ------------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHH
Confidence 36899999998633 222221111 23568999999999999999998854343
Q ss_pred HHhhhhc--C---CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCH
Q 005849 559 MMGIEFT--G---SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSI 626 (674)
Q Consensus 559 ~~~~~~~--~---~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~ 626 (674)
+....+. + ..|++++.+||+++ .+|+|||||+||+|+++|++++||+|++||++++.++ .+.+|++
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 3332222 2 13558999999998 7999999999999999999999999999999999888 8888863
No 44
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-54 Score=444.65 Aligned_cols=358 Identities=28% Similarity=0.469 Sum_probs=310.6
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHH
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT 167 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~ 167 (674)
++++|++++|.-|+|..+||||+++.+++|+++||+|++|..|++..|+|+||+.||.+ ++..|..|.
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqta----aatnG~~P~-------- 104 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTA----AATNGRNPP-------- 104 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhh----HhhcCCChH--------
Confidence 35689999999999999999999999999999999999999999999999999996544 566788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 168 KRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
+.++...+.+.+..+.+||.++ |-| |+||.|+..|++++..+.++|+||++.+..+||.+|+|+..+.+|.-
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt~FIR---TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k 177 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYTKFIR---TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK 177 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchhheee---cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc
Confidence 3456777888888999999988 544 99999999999999999999999999999999999999999877742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
..
T Consensus 178 ~p------------------------------------------------------------------------------ 179 (578)
T KOG0436|consen 178 NP------------------------------------------------------------------------------ 179 (578)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
|| .| .++.--+|++
T Consensus 180 ---~~-----------------------~g----------------------------------------k~vsmEsg~~ 193 (578)
T KOG0436|consen 180 ---CP-----------------------PG----------------------------------------KVVSMESGNP 193 (578)
T ss_pred ---CC-----------------------CC----------------------------------------ceeeeccCCc
Confidence 00 00 0122237889
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--c-cCCCcccceeeecCCcccEEE
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q-~~WG~piP~~~~~~~~~~~~~ 482 (674)
++++..+.+|++++++++.+.+.++.+.--+.|+..+.....||+ +++|..||| + ..||+|+|- |
T Consensus 194 vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~-------d---- 262 (578)
T KOG0436|consen 194 VVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG-------D---- 262 (578)
T ss_pred eeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC-------C----
Confidence 999999999999999999999999987777899999999999995 799999999 3 699999992 1
Q ss_pred eCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCC---ChhhhhhcCCcceeEEeehhhhh----HHH
Q 005849 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV---SADDFKKFYPTTMLETGHDILFF----WVA 555 (674)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~---~~~~f~~~~P~d~~~~G~Dii~~----w~~ 555 (674)
++++++||||+.+.|++.+|+|.+ .+..+.-+||+.++++|+||++| |.+
T Consensus 263 -----------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPa 319 (578)
T KOG0436|consen 263 -----------------------DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPA 319 (578)
T ss_pred -----------------------CcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHH
Confidence 468999999999999999999853 24677889999999999999986 566
Q ss_pred HHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH--H
Q 005849 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--N 632 (674)
Q Consensus 556 ~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~ 632 (674)
.+++.++ .+| +.|++||+.+ .+|.|||||+||+|+|.+++++||+|++||||+.... +.|-+|+++.+.. +
T Consensus 320 fLmaAGl----plP-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n 393 (578)
T KOG0436|consen 320 FLMAAGL----PLP-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVN 393 (578)
T ss_pred HHHhcCC----CCc-cEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHH
Confidence 5555444 335 8999999998 8999999999999999999999999999999999887 9999999999977 5
Q ss_pred HHHHHHHHHHHHHHHh
Q 005849 633 KAFTNKLWNAGKFILQ 648 (674)
Q Consensus 633 ~~~~~kl~n~~~f~~~ 648 (674)
..+.++|.|+++++.+
T Consensus 394 ~~La~~lG~LlnRc~g 409 (578)
T KOG0436|consen 394 AHLANTLGNLLNRCLG 409 (578)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788999999999887
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-41 Score=378.06 Aligned_cols=311 Identities=25% Similarity=0.323 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|++... +..++++|. |+|+|.+||||+++++..|+++||+|++||+|+++.|+|++|.++ .+.+++.|+++.
T Consensus 16 f~p~~~-~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki----~~~A~~~g~~~~- 87 (463)
T PRK00260 16 FKPLEP-GKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKI----IKRANEEGESIK- 87 (463)
T ss_pred cccCCC-CcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHH----HHHHHHcCCCHH-
Confidence 554332 334555554 567799999999999999999999999999999999999999874 445567787765
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGA-SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++++++.+.+++++++||| ..||.... | +|...+++++++|+++|++|++..+|+||+..-
T Consensus 88 -----------e~~~~~~~~f~~~~~~Lgi~~~d~~~r~-t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~--- 149 (463)
T PRK00260 88 -----------ELTERYIAAFHEDMDALNVLPPDIEPRA-T---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF--- 149 (463)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCCCccccc-c---ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc---
Confidence 6678999999999999999 56754322 2 478889999999999999999999999998631
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
+.|.+|.+.....-. .|.. |+
T Consensus 150 --------------------------------------------------~~yg~ls~~~~~~~~-~~~~--------~~ 170 (463)
T PRK00260 150 --------------------------------------------------PDYGKLSGRNLDELQ-AGAR--------VE 170 (463)
T ss_pred --------------------------------------------------cccccCCCCCHHHHh-ccCc--------CC
Confidence 112222221110000 0000 00
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
.+ .--+++.||.++++..
T Consensus 171 ~~--------~~K~~~~DF~Lwk~~~------------------------------------------------------ 188 (463)
T PRK00260 171 VA--------EEKRDPLDFALWKAAK------------------------------------------------------ 188 (463)
T ss_pred cc--------cCCCCccccceecCCC------------------------------------------------------
Confidence 00 0024555666654311
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+|+ . -| ...||.--|-|++++.
T Consensus 189 ---~~~-----------------------------~-------------------~w----~s~~g~grpgWhiecs--- 210 (463)
T PRK00260 189 ---PGE-----------------------------P-------------------SW----ESPWGKGRPGWHIECS--- 210 (463)
T ss_pred ---CCC-----------------------------C-------------------CC----CCCCCCCCCChhHHHH---
Confidence 010 0 12 3368988999999761
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+-...+| -|.|++.+|.|++|+|+.++++
T Consensus 211 --------------------------------------am~~~~lg------------~~~Dih~gG~DlifpHh~neia 240 (463)
T PRK00260 211 --------------------------------------AMSTKYLG------------ETFDIHGGGADLIFPHHENEIA 240 (463)
T ss_pred --------------------------------------HHHHHhcC------------CCcceecCccccCCCchHhHHH
Confidence 01001111 2579999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.+.++.+ .||.++|+|+.+++.+|+|||||+||+|++.|++++||+|++||++++++++++++|+.+.+..+++.++++
T Consensus 241 qs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl 319 (463)
T PRK00260 241 QSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERL 319 (463)
T ss_pred HHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHH
Confidence 9999888 799999999888889999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHH
Q 005849 640 WNAGKFIL 647 (674)
Q Consensus 640 ~n~~~f~~ 647 (674)
||+++++.
T Consensus 320 ~~~~~~~~ 327 (463)
T PRK00260 320 YNALAETA 327 (463)
T ss_pred HHHHHHhh
Confidence 99998864
No 46
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-42 Score=356.77 Aligned_cols=387 Identities=20% Similarity=0.296 Sum_probs=318.4
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHH-HHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~-~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~ 165 (674)
.++...+|+..-||+|..+|+|++-+. ..+|++|||.+.+|++.+++.|+|++|.++|.+ +.++|.+|+++
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetk----aleeg~tP~el---- 82 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETK----ALEEGLTPQEL---- 82 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHH----HHHccCCHHHH----
Confidence 356678999999999999999999965 569999999999999999999999999996544 56789999854
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchh
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev 244 (674)
+++++...+.....++|++| +.+ |..+...+.+|.+|.+|+++|++-+..-.+.+|+.|++.|+|-.|
T Consensus 83 --------cdKyh~ihk~vy~Wf~IdfD~fgr---tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 83 --------CDKYHGIHKVVYDWFKIDFDEFGR---TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred --------HHhcchhHHHHHHhhcccccccCc---ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 47888888999999999999 665 888889999999999999999999999999999999999998555
Q ss_pred hccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCC
Q 005849 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (674)
Q Consensus 245 ~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GT 324 (674)
+
T Consensus 152 e------------------------------------------------------------------------------- 152 (567)
T KOG1247|consen 152 E------------------------------------------------------------------------------- 152 (567)
T ss_pred h-------------------------------------------------------------------------------
Confidence 3
Q ss_pred cceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCC
Q 005849 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGG 404 (674)
Q Consensus 325 G~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~ 404 (674)
..||.|+-+ |..|.+|++||..-+ ..+...|.|..|.
T Consensus 153 ---g~cp~C~yd----------------~ARGDqcd~cG~l~N------------------------~~el~~pkc~ic~ 189 (567)
T KOG1247|consen 153 ---GKCPFCGYD----------------DARGDQCDKCGKLVN------------------------AAELKIPKCKICQ 189 (567)
T ss_pred ---ccCCCCCCc----------------cccchhhhhhhhhcC------------------------HHHhcCcchheec
Confidence 126767665 468999999996522 2355678999999
Q ss_pred CcccceeeccccccchHHHHHHHHHHHhCCce-EechhHHHHHHHHH-hcCCCceeecccCCCcccceeeecCCcccEEE
Q 005849 405 EVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (674)
Q Consensus 405 ~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~-~~P~~~~~~~~~~l-~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~ 482 (674)
...+++.+.+.|++++++++++.+.++...+. -+..+.+.+...|| ++++..||||..-||+|+|. +.|
T Consensus 190 ~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl-------e~f-- 260 (567)
T KOG1247|consen 190 AGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL-------EKF-- 260 (567)
T ss_pred cCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh-------hhh--
Confidence 99999999999999999999999998753211 24567889999999 57999999999999999995 111
Q ss_pred eCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--Ccc---eeEEeehhhhhHHHHH
Q 005849 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTT---MLETGHDILFFWVARM 557 (674)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d---~~~~G~Dii~~w~~~~ 557 (674)
+..|++||||+.+.|.+...... ++|++|| |.. +.+.|+|++-||-..+
T Consensus 261 -----------------------k~KVfYVWFDA~IGYlsit~~yt---~ew~kWwknpE~v~LyqFmgKDNVpFHtviF 314 (567)
T KOG1247|consen 261 -----------------------KDKVFYVWFDAPIGYLSITKNYT---DEWEKWWKNPENVELYQFMGKDNVPFHTVIF 314 (567)
T ss_pred -----------------------cccEEEEEEcCcceEEEeehhhh---HHHHHHhcCHhhhhHHHHhccCCCcceeeec
Confidence 24699999999988876543222 6899998 432 5578999999986655
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh-hhChhHHHHHHhcCCC-CCccccCHHHHHH--HH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA--NK 633 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~-~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~--~~ 633 (674)
-...++...+.+.-+-+.---+++-+..|||||+|..|-..++.+ ..++++.||||++.+| .+|..||++++.. +.
T Consensus 315 P~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~ns 394 (567)
T KOG1247|consen 315 PCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNS 394 (567)
T ss_pred chhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhH
Confidence 555555555666444444444556889999999999999999887 4899999999999999 8999999999876 88
Q ss_pred HHHHHHHHHHHHHHhc
Q 005849 634 AFTNKLWNAGKFILQN 649 (674)
Q Consensus 634 ~~~~kl~n~~~f~~~~ 649 (674)
.+++.|.|++++++..
T Consensus 395 eLl~NLGNFvNR~l~f 410 (567)
T KOG1247|consen 395 ELLNNLGNFVNRVLKF 410 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776653
No 47
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=5.6e-40 Score=364.70 Aligned_cols=313 Identities=21% Similarity=0.250 Sum_probs=233.8
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+.. .++.++++|.| ||+|.+||||+|+++..|+++||+|++||+|.++.|+|++|.++ .+.++++|+++.
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkI----i~~A~~~g~~~~- 85 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKI----IKRARENGESVY- 85 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHH----HHHHHHcCCCHH-
Confidence 55433 23445666555 77789999999999999999999999999999999999999874 445677898886
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAV 239 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~l 239 (674)
++++.+.+.+.+++++|||.+|......| .|...+++++++|.++|++|+.. ..|+||+.+-.
T Consensus 86 -----------e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~-- 149 (465)
T TIGR00435 86 -----------EVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK-- 149 (465)
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc--
Confidence 45688999999999999999994322222 68899999999999999999998 99999976421
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
. |..|.|+.+..
T Consensus 150 -----~----------------------------------------------yG~ls~~~~~~----------------- 161 (465)
T TIGR00435 150 -----D----------------------------------------------YGKLSKQDLDQ----------------- 161 (465)
T ss_pred -----h----------------------------------------------hccCCCCCHHH-----------------
Confidence 1 11111110000
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
...|.++-...--.+|.||.
T Consensus 162 ~~~~~~~~~~~~K~~p~DF~------------------------------------------------------------ 181 (465)
T TIGR00435 162 LEAGARVDVDEAKRNKLDFV------------------------------------------------------------ 181 (465)
T ss_pred HhcccccCcccccCCCCCce------------------------------------------------------------
Confidence 00000000000012223333
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+|++.++= ++ .| ...||..-|-|+++|.
T Consensus 182 Lwk~~~~~--------------------------~~-------------------~w----~spwG~grpgWhiecs--- 209 (465)
T TIGR00435 182 LWKSSKEG--------------------------EP-------------------KW----DSPWGKGRPGWHIECS--- 209 (465)
T ss_pred eeCCCCCC--------------------------CC-------------------CC----cCCCCCCCCCcHhHHH---
Confidence 33332211 11 12 3469999999999861
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| .|.|++.+|.|++++|..+.++
T Consensus 210 --------------------------------------am~~~~lg------------~~~Dih~gG~Dl~fpHhene~a 239 (465)
T TIGR00435 210 --------------------------------------AMNDKYLG------------DQIDIHGGGVDLIFPHHENEIA 239 (465)
T ss_pred --------------------------------------HHHHHhcC------------CCceeeccccccccchHHHHHH
Confidence 01011111 2569999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.+.+++++ ||.++|+|+.+++.+|+|||||+||+|+++|++++||+|++|||+++.+++++++|+.+.|+++++.+++|
T Consensus 240 qs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl 318 (465)
T TIGR00435 240 QSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERL 318 (465)
T ss_pred HHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHH
Confidence 99998885 77889999877789999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHh
Q 005849 640 WNAGKFILQ 648 (674)
Q Consensus 640 ~n~~~f~~~ 648 (674)
+|+++++..
T Consensus 319 ~~~~~~~~~ 327 (465)
T TIGR00435 319 YKALRVLDT 327 (465)
T ss_pred HHHHHHHHh
Confidence 999998754
No 48
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.5e-39 Score=350.49 Aligned_cols=333 Identities=18% Similarity=0.178 Sum_probs=242.3
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+ .+.-++++|.|.|| +.+||||+|+++..|+++||+|++||+|.|+.|+|+||.+| .+.++++|++++
T Consensus 31 f~p---~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI----i~~A~~~g~t~~- 100 (411)
T TIGR03447 31 VEP---GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL----FERAERDGVDWR- 100 (411)
T ss_pred ccC---CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH----HHHHHHcCCCHH-
Confidence 655 34567888888777 89999999999999999999999999999999999999884 445677899887
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCCccccCChhHHHHHHHHHHHHHHcCceEEccc----ceeccCC
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPN 234 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~-~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~p~ 234 (674)
++++.+.+.+.+++++|||. .| +-+ |++. .+.+++++++|.++|++|+... .|+++..
T Consensus 101 -----------ela~~y~~~f~~d~~~Lni~~~d~~~R---aTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 101 -----------ELGTSQIDLFREDMEALRVLPPRDYIG---AVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCCCcccC---CCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 55688999999999999986 44 333 4333 7899999999999999999886 6887643
Q ss_pred CCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeee
Q 005849 235 LQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIIS 314 (674)
Q Consensus 235 ~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~ 314 (674)
. .+.|..|.|+....-.. ..
T Consensus 165 ~-----------------------------------------------------~~~YG~Ls~~~~~~~~~-------~~ 184 (411)
T TIGR03447 165 A-----------------------------------------------------TEQFGYESGYDRATMLE-------LF 184 (411)
T ss_pred c-----------------------------------------------------hhccccccCCCHHHHHh-------hh
Confidence 1 01122221111000000 00
Q ss_pred cccccccCCCcceeeCC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 315 DKYVDKEFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 315 ~~~V~~~~GTG~v~~~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
-+.++-...+ -.++.||.++++.+
T Consensus 185 -------~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------------------ 209 (411)
T TIGR03447 185 -------AERGGDPDRPGKRDPLDALLWRAAR------------------------------------------------ 209 (411)
T ss_pred -------cccccCcccccCCCCcccceeCCCC------------------------------------------------
Confidence 0000000000 13444444443211
Q ss_pred ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeee
Q 005849 394 TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI 473 (674)
Q Consensus 394 ~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~ 473 (674)
.+++ -| ...||.--|-|++
T Consensus 210 --------------------------------------~~e~-------------------~w----~spwG~GRPGWHi 228 (411)
T TIGR03447 210 --------------------------------------EGEP-------------------SW----DSPFGPGRPGWHI 228 (411)
T ss_pred --------------------------------------CCCC-------------------Cc----cCCCCCCCChhHH
Confidence 0111 12 4579999999999
Q ss_pred cCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhH
Q 005849 474 VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFW 553 (674)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w 553 (674)
||. .+....+| -+.|++.+|.|++|+|
T Consensus 229 ECs-----------------------------------------am~~~~lg------------~~~Dih~GG~DLifpH 255 (411)
T TIGR03447 229 ECS-----------------------------------------AIATNRLG------------AGFDIQGGGSDLIFPH 255 (411)
T ss_pred HHH-----------------------------------------HHHHHHcC------------CceecccCcccccccc
Confidence 871 11111111 1358999999999999
Q ss_pred HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHH
Q 005849 554 VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTAN 632 (674)
Q Consensus 554 ~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~ 632 (674)
..++++.+.++.++.||.++|+|+.+++.+|+|||||+||+|+++|+++. |++|++|||+++++++++++|+++.|+++
T Consensus 256 heneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 256 HEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEA 335 (411)
T ss_pred hHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHH
Confidence 99999999999998899999999999999999999999999999999886 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------HhcCCCCCChhHHHHHHHhHHH
Q 005849 633 KAFTNKLWNAGKFI-------------LQNLPSQNDISRWEILLAYKVC 668 (674)
Q Consensus 633 ~~~~~kl~n~~~f~-------------~~~~~~~~~~~~~~~L~~~~~~ 668 (674)
++.+++|++++..+ ....+|++.+..+..|...-+-
T Consensus 336 ~~~l~rl~~~~~~~~~~~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~ 384 (411)
T TIGR03447 336 EARLARWRAALAATDAPDATDLIARLRQHLANDLDTPAALAAVDNWAAA 384 (411)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999887532 1123567766666666655443
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-39 Score=347.15 Aligned_cols=329 Identities=19% Similarity=0.180 Sum_probs=241.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
-++++|.|.|| +++||||+|+++..|+++||+|++|++|.++.|+|+||.+| .+.++++|++++
T Consensus 10 v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKI----i~~A~~~G~~~~---------- 73 (384)
T PRK12418 10 ATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPL----LERAARDGVDWR---------- 73 (384)
T ss_pred eEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHH----HHHHHHcCCCHH----------
Confidence 36777777666 99999999999999999999999999999999999999884 455677899987
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-ccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEccc----ceeccCCCCcccccch
Q 005849 170 VWEWKEKYGGTITSQIKRLGA-SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNLQTAVSDLE 243 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi-~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~w~p~~~t~lsd~E 243 (674)
++++.+.+.+.+++++||| ..| +-| |++ +.+.++.++++|.++|++|+... .|+++...-
T Consensus 74 --e~a~~~~~~f~~d~~~Lni~~~~~~~r---aTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~------- 139 (384)
T PRK12418 74 --DLAEREIALFREDMEALRVLPPRDYVG---AVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT------- 139 (384)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCCcccc---CCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch-------
Confidence 5668899999999999997 455 322 444 48899999999999999999988 788865410
Q ss_pred hhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccC-
Q 005849 244 VEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF- 322 (674)
Q Consensus 244 v~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~- 322 (674)
+.|..|.|+.... ...
T Consensus 140 ----------------------------------------------~~YG~ls~~~~~~-----------------~~~~ 156 (384)
T PRK12418 140 ----------------------------------------------PQFGYESGYDRAT-----------------MLEL 156 (384)
T ss_pred ----------------------------------------------hhcccccCCCHHH-----------------HHhh
Confidence 0111111110000 000
Q ss_pred -CCcceee-CC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 323 -GTGVLKI-SP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 323 -GTG~v~~-~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
|...+-. .+ -.++.||.+++..
T Consensus 157 ~~~~~~~~~~~~K~~p~DFaLWK~~------------------------------------------------------- 181 (384)
T PRK12418 157 FAERGGDPDRPGKRDPLDALLWRAA------------------------------------------------------- 181 (384)
T ss_pred hcccccCcccccCCCcccceeeccC-------------------------------------------------------
Confidence 0000000 00 1233343333210
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
++ +++ -| ...||.--|-|++||.
T Consensus 182 -----~~--------------------------~~~-------------------~w----~spwG~GRPGWHiECs--- 204 (384)
T PRK12418 182 -----RP--------------------------GEP-------------------SW----PSPFGPGRPGWHIECS--- 204 (384)
T ss_pred -----CC--------------------------CCC-------------------cc----cCCCCCCCChhHHHHH---
Confidence 00 011 12 4579999999999871
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| -+.|++.+|.|++|+|..++++
T Consensus 205 --------------------------------------am~~~~lg------------~~~DIH~GG~DL~FPHHeneia 234 (384)
T PRK12418 205 --------------------------------------AIALNRLG------------SGFDIQGGGSDLIFPHHEFSAA 234 (384)
T ss_pred --------------------------------------HHHHHHcC------------CCcccccCccccccchhHhHHH
Confidence 11111111 1469999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
.+.++.++.||.++|+|+.+++.+|+|||||+||+|++.++++. ++++++|||+++++++++++|+++.|+++++.+.+
T Consensus 235 q~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r 314 (384)
T PRK12418 235 HAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLAR 314 (384)
T ss_pred HHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999999999998754 66669999999888899999999999999999999
Q ss_pred HHHHHHHH-------------HhcCCCCCChhHHHHHHHhHHHHHhhc
Q 005849 639 LWNAGKFI-------------LQNLPSQNDISRWEILLAYKVCVLTYG 673 (674)
Q Consensus 639 l~n~~~f~-------------~~~~~~~~~~~~~~~L~~~~~~~~~~~ 673 (674)
+++++... ....+|++.+..+..|...-+-+-.|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~ 362 (384)
T PRK12418 315 WRAAAALPAGPDAADVVARVRAALADDLDTPGALAAVDGWATDALEGG 362 (384)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 99887532 112356777777777776666555553
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-38 Score=347.16 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=231.9
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC----------CCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------GTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~----------G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
+.++ .| |++++.+||||+|+++..|+++||++++||+|.|+. |.|+||-.+ .+.++++|+++.
T Consensus 25 ~mYv-CG-pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi----i~~A~~~g~~~~- 97 (490)
T PRK14536 25 RLYG-CG-PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM----VKSAQEHGKSVL- 97 (490)
T ss_pred EEEe-eC-CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH----HHHHHHcCCCHH-
Confidence 3444 44 688899999999999999999999999999999996 888888774 445677899886
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVS 240 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ls 240 (674)
++++.+.+.+.+++++|||..+ .++|..++|...++.++++|.++|++|+....|+||+..
T Consensus 98 -----------e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----- 158 (490)
T PRK14536 98 -----------EIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----- 158 (490)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-----
Confidence 5668899999999999999886 244667899999999999999999999999999998741
Q ss_pred cchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccc
Q 005849 241 DLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (674)
Q Consensus 241 d~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~ 320 (674)
.+.|.+|.|+.... +
T Consensus 159 ------------------------------------------------~~~YG~Ls~~~~~~-----------------l 173 (490)
T PRK14536 159 ------------------------------------------------FPSYGSLASAAVED-----------------L 173 (490)
T ss_pred ------------------------------------------------ccchhhhcCCCHHH-----------------h
Confidence 01122222211000 0
Q ss_pred cCCCcceeeCC-CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 321 EFGTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 321 ~~GTG~v~~~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
..|.. |-..+ -.++.||.+++..
T Consensus 174 ~~g~~-v~~~~~K~np~DFaLWK~~------------------------------------------------------- 197 (490)
T PRK14536 174 QAGAR-IEHDTNKRNPHDFVLWFTR------------------------------------------------------- 197 (490)
T ss_pred hcCCc-CCCCCCCCCchhchhcccc-------------------------------------------------------
Confidence 00000 00000 1233444443210
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
+.+.+..++....||.+.|-|+++|.
T Consensus 198 ---------------------------------------------------~~~~~~~~~W~SpWG~GRPGWHIECs--- 223 (490)
T PRK14536 198 ---------------------------------------------------SKFENHALTWDSPWGRGYPGWHIECS--- 223 (490)
T ss_pred ---------------------------------------------------cCCCCCCCcccCCCCCCCCChHHHHH---
Confidence 01112233457789999999999871
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVM 559 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~ 559 (674)
.+....+| . ..|++.+|.|++|+|....++
T Consensus 224 --------------------------------------aMs~~~lg------~------~~DIH~GG~DliFPHHeneiA 253 (490)
T PRK14536 224 --------------------------------------AMSMKYLG------E------QCDIHIGGVDHIRVHHTNEIA 253 (490)
T ss_pred --------------------------------------HHHHHHcC------C------ceeEEeccccCCCcchhhHHH
Confidence 11111111 1 249999999999999999999
Q ss_pred HhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 560 ~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
++.+++++ ||.++|+|+.++..+|+|||||+||+|+++|++++ |+++++||++++.+++++++|+++.|+++.+.+.+
T Consensus 254 qs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~r 332 (490)
T PRK14536 254 QCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRS 332 (490)
T ss_pred HHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99988886 88999999988889999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 005849 639 LWNAGKFIL 647 (674)
Q Consensus 639 l~n~~~f~~ 647 (674)
|.+++..+.
T Consensus 333 l~~~~~~~~ 341 (490)
T PRK14536 333 LVRRVARVV 341 (490)
T ss_pred HHHHHHHHH
Confidence 999876653
No 51
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=2.1e-38 Score=352.81 Aligned_cols=332 Identities=17% Similarity=0.191 Sum_probs=246.5
Q ss_pred hccCCCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCC
Q 005849 51 AAENNKDTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRP 129 (674)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~ 129 (674)
++|.......+-||. ..++.- |.+.. .++-+.++| | |++.|.+||||+|+++..|+++||++++||+
T Consensus 51 ~~~~~~~~~l~lyNTltr~ke~---------f~P~~-~~~v~~Y~C-G-pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~ 118 (557)
T PLN02946 51 GAPASRGRELHLYNTMSRKKEL---------FKPKV-EGKVGMYVC-G-VTAYDLSHIGHARVYVTFDVLYRYLKHLGYE 118 (557)
T ss_pred CCcCCCCCceEEEECCCCCeec---------cccCC-CCceeEEEe-C-CccCCCCccccchhhHHHHHHHHHHHhcCCc
Confidence 556666666777886 433222 66543 234456665 4 5777999999999999999999999999999
Q ss_pred eeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHH
Q 005849 130 TLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209 (674)
Q Consensus 130 V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v 209 (674)
|.++.|+|++|.+| .+.++++|+++. ++++++.+.+.+++++|||.-. .+.|...+|...+
T Consensus 119 V~~V~niTDiDDKI----i~~A~~~g~~~~------------ela~~y~~~f~~d~~~LnI~~p---~~~pratehi~~i 179 (557)
T PLN02946 119 VRYVRNFTDVDDKI----IARANELGEDPI------------SLSRRYCEEFLSDMAYLHCLPP---SVEPRVSDHIPQI 179 (557)
T ss_pred EEEEECCCCccCHH----HHHHHHcCCCHH------------HHHHHHHHHHHHHHHHCCCCCC---CeecCcchhHHHH
Confidence 99999999999985 445677898887 5668899999999999999744 3447788999999
Q ss_pred HHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCC
Q 005849 210 VEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQD 289 (674)
Q Consensus 210 ~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~ 289 (674)
++++++|+++|++|++...|+||... .
T Consensus 180 i~~i~~Li~kG~aY~~~g~VYFdv~~-----------------------------------------------------f 206 (557)
T PLN02946 180 IDMIKQILDNGCAYRVDGDVYFSVDK-----------------------------------------------------F 206 (557)
T ss_pred HHHHHHHHHCCCEEEECCeEEEecCc-----------------------------------------------------c
Confidence 99999999999999999999998651 1
Q ss_pred chhhhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCC
Q 005849 290 EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (674)
Q Consensus 290 ~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~ 369 (674)
+.|..|.|+....- ..|..+-...--.+|.||.+++..+
T Consensus 207 ~~YG~Ls~~~l~~l-----------------~~g~rv~~~~~K~np~DFaLWK~~k------------------------ 245 (557)
T PLN02946 207 PEYGKLSGRKLEDN-----------------RAGERVAVDSRKKNPADFALWKAAK------------------------ 245 (557)
T ss_pred hhhhhcCCCChhHh-----------------hcCCCCCcccccCCccccceeccCC------------------------
Confidence 12333333221100 0011100000123455555553211
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHH
Q 005849 370 RFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHW 449 (674)
Q Consensus 370 ~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~ 449 (674)
.|++
T Consensus 246 --------------------------------------------------------------~ge~-------------- 249 (557)
T PLN02946 246 --------------------------------------------------------------EGEP-------------- 249 (557)
T ss_pred --------------------------------------------------------------CCCC--------------
Confidence 0111
Q ss_pred HhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCC
Q 005849 450 LSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (674)
Q Consensus 450 l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (674)
-| ...||..-|-|++||. .|....+|
T Consensus 250 -----~W----~SPWG~GRPGWHIECS-----------------------------------------aMs~~~lG---- 275 (557)
T PLN02946 250 -----FW----DSPWGPGRPGWHIECS-----------------------------------------AMSAAYLG---- 275 (557)
T ss_pred -----Cc----cCCCCCCCCcHHHHHH-----------------------------------------HHHHHHcC----
Confidence 13 4579999999999871 11111111
Q ss_pred ChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhH
Q 005849 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADA 608 (674)
Q Consensus 530 ~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~ 608 (674)
-+.|++.+|.|++|+|....++.+.+..++ ||.+.|+| |++. .+|+|||||+||+++++|++++||+|+
T Consensus 276 --------~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~da 345 (557)
T PLN02946 276 --------HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLA 345 (557)
T ss_pred --------CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccc
Confidence 135999999999999999999999887775 67788888 5555 999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 005849 609 LRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (674)
Q Consensus 609 lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~ 647 (674)
+|||+++++++++++|+++.|+.+.+.+.+++++++.+.
T Consensus 346 lR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~ 384 (557)
T PLN02946 346 LRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCE 384 (557)
T ss_pred eeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888888876653
No 52
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-37 Score=341.52 Aligned_cols=302 Identities=21% Similarity=0.250 Sum_probs=228.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+.++|- |++.+.+||||+|+++..|+++||++++||+|.++.|+|++|-+| .+.+++.|+++.
T Consensus 250 ~mYvCG--PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKI----I~~A~e~G~sp~----------- 312 (699)
T PRK14535 250 RMYVCG--MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKI----IARAAENGETIG----------- 312 (699)
T ss_pred EEEecC--CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHH----HHHHHHcCCCHH-----------
Confidence 344444 577799999999999999999999999999999999999999884 445677898887
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++.+.+.+.+++++|||..+ .+.|...+|...++.++++|.++|++|++. ..|+||..+-
T Consensus 313 -ela~~y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f------------- 375 (699)
T PRK14535 313 -ELTARFIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF------------- 375 (699)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc-------------
Confidence 5668899999999999999888 245667799999999999999999999874 4799986521
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
+.|..|.|+.... +..|..+-..
T Consensus 376 ----------------------------------------~~YG~LS~~~~~~-----------------l~~g~rve~d 398 (699)
T PRK14535 376 ----------------------------------------AAYGQLSGKSLDD-----------------LRAGERVEVD 398 (699)
T ss_pred ----------------------------------------cccccccCCChHH-----------------hcCCCccccc
Confidence 1122222211100 0001100000
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.--.++.||.+++...
T Consensus 399 ~~Krnp~DFaLWK~sk---------------------------------------------------------------- 414 (699)
T PRK14535 399 GFKRDPLDFVLWKAAK---------------------------------------------------------------- 414 (699)
T ss_pred cccCCccccceeccCC----------------------------------------------------------------
Confidence 0124555666554311
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
.|+. -| ...||..-|-|++||
T Consensus 415 ----------------------~Gep-------------------~W----~SPWG~GRPGWHIEC-------------- 435 (699)
T PRK14535 415 ----------------------AGEP-------------------AW----ESPWGNGRPGWHIEC-------------- 435 (699)
T ss_pred ----------------------CCCC-------------------Cc----cCCCCCCCCchHHHH--------------
Confidence 0111 13 457999999999987
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCC-
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV- 568 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~- 568 (674)
+.+....+| . +.|++.+|.|++|+|.-..++.+.+.+|+.
T Consensus 436 ---------------------------SAMs~~~LG------~------~~DIHgGG~DLiFPHHENEiAQseA~~g~~~ 476 (699)
T PRK14535 436 ---------------------------SAMSENLFG------D------TFDIHGGGADLQFPHHENEIAQSVGATGHTC 476 (699)
T ss_pred ---------------------------HHHHHHHcC------C------cceeECCccccCCCCCccHHHHHHHhhCCCc
Confidence 111111121 1 359999999999999999999998877762
Q ss_pred --------------CcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHH
Q 005849 569 --------------PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (674)
Q Consensus 569 --------------Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~ 634 (674)
||.++|+|+-++..+|+|||||+||++++.|++++||+|++|||+++++++++++|+.+.|+++++
T Consensus 477 ~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~ 556 (699)
T PRK14535 477 GHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKG 556 (699)
T ss_pred ccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHH
Confidence 588999986555599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005849 635 FTNKLWNAGKF 645 (674)
Q Consensus 635 ~~~kl~n~~~f 645 (674)
.+++++++++-
T Consensus 557 ~l~Rl~~~l~~ 567 (699)
T PRK14535 557 ALTRLYTTLKN 567 (699)
T ss_pred HHHHHHHHHHh
Confidence 99999888754
No 53
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=2.9e-36 Score=345.13 Aligned_cols=322 Identities=20% Similarity=0.261 Sum_probs=237.3
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC-c
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK-R 158 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r-~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~-~ 158 (674)
|.+.. .+.-++++|.|.+| +.+||||||+++..|++.||++ +.||+|.|++|+|++|-.| .+.+++.|++ +
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----i~~A~~~g~~~~ 125 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----IKRAREEKLSIF 125 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH----HHHHHHhCCCcH
Confidence 65543 34456888888777 9999999999999999999999 9999999999999999874 4556777887 6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcc
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ 238 (674)
. ++++.+.+.+.+++++|||..+ .+.+...+|...+..++++|.++|++|.+...|+++...
T Consensus 126 ~------------el~~~~~~~f~~d~~~Lni~~p---~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~--- 187 (651)
T PTZ00399 126 L------------ELARKWEKEFFEDMKALNVRPP---DVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA--- 187 (651)
T ss_pred H------------HHHHHHHHHHHHHHHHcCCCCC---ccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh---
Confidence 5 5668899999999999999876 233333689999999999999999999998877776431
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
|+- ....|..|. |-. ..+-.
T Consensus 188 -------------------f~~---------------------------~~~~Yg~L~------p~~--------~~~~~ 207 (651)
T PTZ00399 188 -------------------FRK---------------------------AGHVYPKLE------PES--------VADED 207 (651)
T ss_pred -------------------ccc---------------------------chhhHHhhC------hhh--------cCCHH
Confidence 000 000111111 000 00111
Q ss_pred cccCCCcce-eeC-CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccc
Q 005849 319 DKEFGTGVL-KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLR 396 (674)
Q Consensus 319 ~~~~GTG~v-~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~ 396 (674)
.+..|.|.+ ..+ -..++.||.+++.-
T Consensus 208 ~~~~g~~~l~~~~~~Kr~~~DFaLWk~~---------------------------------------------------- 235 (651)
T PTZ00399 208 RIAEGEGALGKVSGEKRSPNDFALWKAS---------------------------------------------------- 235 (651)
T ss_pred HHhcccCCccccCcCCCCCccHHhhCCC----------------------------------------------------
Confidence 111233311 111 12344555544210
Q ss_pred cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCC
Q 005849 397 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476 (674)
Q Consensus 397 ~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~ 476 (674)
.| ++ ..|. ..||-.-|.|+++|.
T Consensus 236 --------kp--------------------------ge-------------------p~W~----SpwG~GrPGWHiECs 258 (651)
T PTZ00399 236 --------KP--------------------------GE-------------------PSWD----SPWGKGRPGWHIECS 258 (651)
T ss_pred --------CC--------------------------CC-------------------CCCC----CCCCCCCCCchHHHH
Confidence 00 01 1132 468888999999761
Q ss_pred cccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHH
Q 005849 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVAR 556 (674)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~ 556 (674)
.+--..+ .+|.|++.+|.|++|+|.-+
T Consensus 259 -----------------------------------------am~~~~l------------g~~~DIh~gG~DL~FPHHeN 285 (651)
T PTZ00399 259 -----------------------------------------AMASNIL------------GDPIDIHSGGIDLKFPHHDN 285 (651)
T ss_pred -----------------------------------------HHHHHHc------------CCcceeeccCCCCCCCcchh
Confidence 1111111 13789999999999999999
Q ss_pred HHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHH
Q 005849 557 MVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (674)
Q Consensus 557 ~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~ 635 (674)
.++.+.+++++.||.++|+| |++. .+|+|||||+||+|+|+|++++||+|++||||++.+++++++||++.+..+.+.
T Consensus 286 EiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~ 364 (651)
T PTZ00399 286 ELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEK 364 (651)
T ss_pred HHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHH
Confidence 99999999998899999999 7765 899999999999999999999999999999999988899999999999999888
Q ss_pred HHHHHHHHHHHHhcC
Q 005849 636 TNKLWNAGKFILQNL 650 (674)
Q Consensus 636 ~~kl~n~~~f~~~~~ 650 (674)
.++++|++..+...+
T Consensus 365 ~~~l~n~~~rl~s~l 379 (651)
T PTZ00399 365 DKVFFNFFANVKIKL 379 (651)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999988876544
No 54
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-35 Score=325.93 Aligned_cols=299 Identities=18% Similarity=0.220 Sum_probs=224.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeee---------cCCC-CCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW---------LPGT-DHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 99 P~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~---------~~G~-D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
|++...+||||+|+++..|+++||++++||+|.+ +.|. |+||-+ +.+.++++|+++.
T Consensus 29 pTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddK----Ii~~A~~~g~~~~--------- 95 (481)
T PRK14534 29 PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDK----VVKAARERGLTVY--------- 95 (481)
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcH----HHHHHHHcCCCHH---------
Confidence 6777999999999999999999999999999999 6888 444544 5556678899987
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++.+.+.+.+++++|||..|- +....++|...++.++++|.++|++|.....|+||+.+-
T Consensus 96 ---e~a~~~~~~f~~d~~~Lni~~~~---~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~------------ 157 (481)
T PRK14534 96 ---EISRFFTEAFFDDCKKLNIVYPD---KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF------------ 157 (481)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCCc---eecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc------------
Confidence 56688999999999999999882 222357899999999999999999999999999987631
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEec-CCCCCceeeeeecccccccCCCcce
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV-PMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~-P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
+.|.+|.|+.... +- ..|+++
T Consensus 158 -----------------------------------------~~YG~ls~~~l~~l~~----------------~~~~~v- 179 (481)
T PRK14534 158 -----------------------------------------KSYGQMAGINLNDFKD----------------MSVSRV- 179 (481)
T ss_pred -----------------------------------------cchhhhcCCCHHHHhh----------------hccCcC-
Confidence 1122222211110 00 000000
Q ss_pred eeC-CCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 328 KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 328 ~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
... --.++.||.+++..
T Consensus 180 ~~~~~K~np~DFaLWK~~-------------------------------------------------------------- 197 (481)
T PRK14534 180 EIDKSKRNKSDFVLWFTN-------------------------------------------------------------- 197 (481)
T ss_pred CcccCCCCcccchhcCcC--------------------------------------------------------------
Confidence 000 01222233222100
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
+.+++..+++...||..-|-|++||.
T Consensus 198 --------------------------------------------~~~~~~~~~w~spWG~GrPgWHiECs---------- 223 (481)
T PRK14534 198 --------------------------------------------SKFKDQEMKWDSPWGFGYPSWHLECA---------- 223 (481)
T ss_pred --------------------------------------------CcCCCCCCeecCCCCCcCCcHHHHHH----------
Confidence 11344556678899999999999871
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcC
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~ 566 (674)
.+....++ -..|++.+|.|++|+|....++++.+.++
T Consensus 224 -------------------------------am~~~~lg------------~~~DIH~GG~DliFPHHene~Aqs~a~~g 260 (481)
T PRK14534 224 -------------------------------AMNLEYFK------------STLDIHLGGVDHIGVHHINEIAIAECYLN 260 (481)
T ss_pred -------------------------------HHHHHHcC------------CcceEEecccccCCCcchhHHHHHhhhcC
Confidence 01111111 13599999999999999999999988877
Q ss_pred CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 005849 567 SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKF 645 (674)
Q Consensus 567 ~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f 645 (674)
+ ||.++|+|+-++..+|+|||||+||+++++|++++ |+++++||++++.+++++++||++.|+++++.+.++++.++.
T Consensus 261 ~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~ 339 (481)
T PRK14534 261 K-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTY 339 (481)
T ss_pred C-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 77899999866668999999999999999999996 999999999999999999999999999999989898887764
Q ss_pred H
Q 005849 646 I 646 (674)
Q Consensus 646 ~ 646 (674)
+
T Consensus 340 ~ 340 (481)
T PRK14534 340 F 340 (481)
T ss_pred H
Confidence 4
No 55
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-34 Score=307.36 Aligned_cols=335 Identities=22% Similarity=0.299 Sum_probs=245.4
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccc
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~ 160 (674)
|.+..+ ++-+.++|- |++....||||+|+++..|++.||++.+||.|.|+..+-+- ..++.+.+.+.|.+..
T Consensus 15 F~P~~~-~~V~mYvCG--pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----DDKIi~rA~~~g~~~~- 86 (464)
T COG0215 15 FVPIDP-GKVKMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----DDKIINRAREEGLSIR- 86 (464)
T ss_pred ccCCCC-CeEEEEecC--CccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----cHHHHHHHHHhCCCHH-
Confidence 555332 233455544 57889999999999999999999999999999999887664 4456677788888755
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcc
Q 005849 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTA 238 (674)
Q Consensus 161 l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~ 238 (674)
++++.|.+.+.+++..|||.- |.. +--.+|...+.+++++|.++|++|.. ...|+|+...
T Consensus 87 -----------ev~~~~i~~f~~D~~aL~v~~p~~~----PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~--- 148 (464)
T COG0215 87 -----------EVAERYIAAFFEDMDALNVLPPDIE----PRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK--- 148 (464)
T ss_pred -----------HHHHHHHHHHHHHHHHhCCCCCccc----CcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEeccc---
Confidence 567899999999999999953 422 33346888999999999999999998 5789886541
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
.+.|.+|.|+....-+..
T Consensus 149 --------------------------------------------------f~~YG~LS~~~~le~l~~------------ 166 (464)
T COG0215 149 --------------------------------------------------FKDYGKLSGRDSLEELQA------------ 166 (464)
T ss_pred --------------------------------------------------chhhHhhcCCCChhHHhh------------
Confidence 112333333211000000
Q ss_pred cccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccc
Q 005849 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (674)
Q Consensus 319 ~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (674)
|..+-...--.+|.||.+++..+
T Consensus 167 ----gar~~~~~~Krnp~DFvLWK~sk----------------------------------------------------- 189 (464)
T COG0215 167 ----GARVEVDEEKRNPLDFVLWKAAK----------------------------------------------------- 189 (464)
T ss_pred ----ccccccccccCCchhheeeccCC-----------------------------------------------------
Confidence 00000000023445555543211
Q ss_pred cccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcc
Q 005849 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (674)
Q Consensus 399 ~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~ 478 (674)
.|+. -| ...||..-|-|++||
T Consensus 190 ---------------------------------~gEp-------------------~W----~SPWG~GRPGWHIEC--- 210 (464)
T COG0215 190 ---------------------------------PGEP-------------------SW----DSPWGKGRPGWHIEC--- 210 (464)
T ss_pred ---------------------------------CCCC-------------------CC----CCCCCCCCCchhHHH---
Confidence 0111 13 678999999999987
Q ss_pred cEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHH
Q 005849 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMV 558 (674)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~ 558 (674)
+.|....+| +. .|++.+|.|++|+|.-..+
T Consensus 211 --------------------------------------SaM~~~~LG------~~------~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 211 --------------------------------------SAMSTKYLG------ET------FDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred --------------------------------------HHHHHHHhC------CC------cceecCcccccCCCcccHH
Confidence 112222232 12 3999999999999999999
Q ss_pred HHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHH
Q 005849 559 MMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNK 638 (674)
Q Consensus 559 ~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~k 638 (674)
+.+.+.+|..||.++|+|.-++..+|+|||||+||++++.|++++|++.+|||+|++++++++++||++.|+++++.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999999889999999977667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--------------------cCCCCCChhHHHHHHHhHHHH
Q 005849 639 LWNAGKFILQ--------------------NLPSQNDISRWEILLAYKVCV 669 (674)
Q Consensus 639 l~n~~~f~~~--------------------~~~~~~~~~~~~~L~~~~~~~ 669 (674)
|.++++.+.. ..+||+.+..+..|...-+.+
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~ 371 (464)
T COG0215 321 LYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEI 371 (464)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999886432 225666666666666665554
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.9e-32 Score=272.89 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=81.7
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 618 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~ 618 (674)
|.|++.+|.|++++|..++++++.++.++ ||.++++|+.+++.+|+|||||+||+|+++|++++||+|++|||+++.++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 45899999999999999999999999888 89999999988889999999999999999999999999999999999999
Q ss_pred CCccccC
Q 005849 619 GQDLSLS 625 (674)
Q Consensus 619 ~~d~~fs 625 (674)
+++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999986
No 57
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=4.2e-31 Score=271.73 Aligned_cols=290 Identities=23% Similarity=0.314 Sum_probs=190.4
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
++++|- |++...+||||+|+++..|++.||++..||+|.++.+..+.. .++.+.+++.|+++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiD----DKii~~A~~~g~~~~----------- 72 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDID----DKIIKRAREEGVSPQ----------- 72 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SS----HHHHHHHHHTTS-HH-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccc----hHHHHHHHhccCCHH-----------
Confidence 455554 577799999999999999999999999999999999886653 446677788898876
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc-cceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
+.++.+.+.+.++|++|||.-. ...+--.++...+.+++++|.++|++|... ..|+++...
T Consensus 73 -ela~~y~~~f~~dm~~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~-------------- 134 (300)
T PF01406_consen 73 -ELARRYEEEFFEDMKALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK-------------- 134 (300)
T ss_dssp -HHHHHHHHHHHHHHHHTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG--------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc--------------
Confidence 4567889999999999999865 233445579999999999999999999999 999886431
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.
T Consensus 135 ---------------------------------------~---------------------------------------- 135 (300)
T PF01406_consen 135 ---------------------------------------F---------------------------------------- 135 (300)
T ss_dssp ---------------------------------------S----------------------------------------
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
++.|.+++.+..+....-..+.. ..-+.|. +-+.+
T Consensus 136 ------------------------------~~YG~Ls~~~~~~l~~~~~~~~~----------~~K~~p~-----DFaLW 170 (300)
T PF01406_consen 136 ------------------------------PDYGKLSNQDLEDLEAGARVEVD----------YEKRNPR-----DFALW 170 (300)
T ss_dssp ------------------------------TTTTTTTT-SHHHHHHCHHHTT-----------TTSSSTT------EEEE
T ss_pred ------------------------------cccccccccchhhHHhhhhcccc----------cccCCCc-----ceeee
Confidence 01233333332221110000000 0000010 00000
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
+.. +.+++ -| ...||...|-|++||.
T Consensus 171 K~~------------------~~~e~-------------------~w----~spwG~GRPGWHiECs------------- 196 (300)
T PF01406_consen 171 KAA------------------KPGEP-------------------SW----DSPWGKGRPGWHIECS------------- 196 (300)
T ss_dssp EE--------------------TTS---------------------B------TTSSEEE-HHHHHH-------------
T ss_pred ecc------------------cccCC-------------------cc----cCCCccCcCceeeehH-------------
Confidence 000 00111 12 4579999999999871
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCC
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~P 569 (674)
.+....+| -+.|++.+|.|++|+|....++.+.++++ .|
T Consensus 197 ----------------------------am~~~~lG------------~~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~ 235 (300)
T PF01406_consen 197 ----------------------------AMSMKYLG------------DTFDIHGGGIDLIFPHHENEIAQSEAATG-KP 235 (300)
T ss_dssp ----------------------------HHHHHHHT------------TSEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-
T ss_pred ----------------------------HHHHHHcC------------CCceEEccccccCCCCccchHHHHHHhhC-ch
Confidence 11111111 24699999999999999999999999988 58
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHH
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~ 634 (674)
|.++|+|.-.+..+|+|||||+||+++++|++++|+++++||+|++++++++++||++.|+++++
T Consensus 236 ~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 236 FANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 89999997666689999999999999999999999999999999999999999999999998764
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.96 E-value=1.9e-28 Score=261.08 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=99.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--------l~~e~~ve~~~~~~g~~~~~l 161 (674)
.+++|++|+ +|||.+||||++.++.+|+++||+|++|++|.+++|+|+|| +|.+ .++..|++...+
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~-----~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES-----YEQYIGMPLSSV 92 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH-----HHHhcCccchhc
Confidence 569999997 59999999999999999999999999999999999999994 4432 234456665544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
.++. ..|..|++++.+.+++.|.+|||++|+-+. |.....-...+.++..|.+++.|..-.
T Consensus 93 p~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~--T~~y~~g~~~~~i~~~L~~~~~I~~i~ 153 (353)
T cd00674 93 PDPF--GCCESYAEHFERPFEESLEKLGIEVEFISQ--SQMYKSGLYDENILIALEKRDEIMAIL 153 (353)
T ss_pred hhhc--CCCHHHHHHHHHHHHHHHHHcCCeeeeeec--CCchhhchHHHHHHHHHHHCChHHHHH
Confidence 3222 234478999999999999999999995431 444444578888889999998876543
No 59
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1e-26 Score=246.66 Aligned_cols=315 Identities=22% Similarity=0.253 Sum_probs=228.1
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchhHHHHHHHHHH--cCCC
Q 005849 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGIK 157 (674)
Q Consensus 81 f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r-~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~--~g~~ 157 (674)
|-+.. .++-++++|. |++...-||||||+|+--||+.|+++ .-||+|.|++++-+-.- ++.+.++. .+..
T Consensus 48 fip~~-~~~v~wY~CG--pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDD----KII~RAr~~~m~e~ 120 (586)
T KOG2007|consen 48 FIPNN-GNKVTWYICG--PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDD----KIIKRARKEEMGEK 120 (586)
T ss_pred eeeCC-CCeEEEEEec--CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhH----HHHHHhhhhhhccc
Confidence 55432 2334566655 58889999999999999999999999 89999999999876433 34444431 1222
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCc
Q 005849 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (674)
Q Consensus 158 ~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t 237 (674)
+..+ .+. + ..|.+.+.++|.+|++... ...|--.+|...+..+++++.++|+.|.....|+++..--.
T Consensus 121 ~~~l-----~~~---F-~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 121 PLSL-----SER---F-CYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred hhhH-----HHH---H-HHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 2211 111 1 2567889999999998765 23355567888899999999999999999999998753100
Q ss_pred ccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccc
Q 005849 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (674)
Q Consensus 238 ~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~ 317 (674)
..|..|+|..-..+
T Consensus 189 ----------------------------------------------------~~YgKL~G~~~~~~-------------- 202 (586)
T KOG2007|consen 189 ----------------------------------------------------HSYGKLVGQRKNLQ-------------- 202 (586)
T ss_pred ----------------------------------------------------chhhhhcCchhhcc--------------
Confidence 12445555331111
Q ss_pred ccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccc
Q 005849 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (674)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (674)
.|.|..-..---.++||++++..+
T Consensus 203 ----~gEg~l~ds~KR~p~DFALWKAsK---------------------------------------------------- 226 (586)
T KOG2007|consen 203 ----EGEGVLSDSRKRSPADFALWKASK---------------------------------------------------- 226 (586)
T ss_pred ----cCcCccccccCCChhhhhhhhhcC----------------------------------------------------
Confidence 122221112224567777775422
Q ss_pred ccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCc
Q 005849 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477 (674)
Q Consensus 398 p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~ 477 (674)
.|+.. | ...||..-|-|++||.
T Consensus 227 ----------------------------------~gEP~-------------------W----eSPWG~GRPGWHIECS- 248 (586)
T KOG2007|consen 227 ----------------------------------PGEPS-------------------W----ESPWGKGRPGWHIECS- 248 (586)
T ss_pred ----------------------------------CCCCC-------------------C----CCCCCCCCCCceeeeH-
Confidence 11211 2 4579999999999871
Q ss_pred ccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHH
Q 005849 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (674)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~ 557 (674)
.+--..+| . ..|++-+|.|+-|+|.-+.
T Consensus 249 ----------------------------------------aMas~~lG------~------~lDIH~GG~DL~FPHHeNE 276 (586)
T KOG2007|consen 249 ----------------------------------------AMASAILG------S------QLDIHGGGIDLAFPHHENE 276 (586)
T ss_pred ----------------------------------------HHHHHhhc------c------ccceecCcccccCCCcccH
Confidence 01111111 1 2489999999999999999
Q ss_pred HHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTN 637 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~ 637 (674)
++.+.+.....++-++|+|.-.+..+|+|||||++|+|+++|++++|+|++||++++++.++++++|+.+.|..+.++..
T Consensus 277 iAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~ 356 (586)
T KOG2007|consen 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEK 356 (586)
T ss_pred HHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHH
Confidence 99999988888899999985555589999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 005849 638 KLWNAGKFI 646 (674)
Q Consensus 638 kl~n~~~f~ 646 (674)
.+.|++.-+
T Consensus 357 ~~~~ff~~~ 365 (586)
T KOG2007|consen 357 SLNNFFLDV 365 (586)
T ss_pred HHHHHHHHH
Confidence 888887543
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=261.84 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~ 157 (674)
...|+......+++++|..++|||||+|||||+|+.+++|+++|++|+.||+|.++.|+|++|.++...++.. +.
T Consensus 99 ~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~----~~- 173 (507)
T PRK01611 99 GERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL----EL- 173 (507)
T ss_pred hhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH----HH-
Confidence 3567765444567899999999999999999999999999999999999999999999999998865444321 11
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceE-Ecccce
Q 005849 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIY-QGSYMV 229 (674)
Q Consensus 158 ~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy-~~~~~v 229 (674)
...++++.+.+.+++++++|||.+| |.+ +.+..+...+++++++|.++|++| +....+
T Consensus 174 -----------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~---es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~ 233 (507)
T PRK01611 174 -----------LWRKAVDISLDEIKEDLDRLGVHFDVWFS---ESELYYNGKVDEVVEDLKEKGLLYVESDGAL 233 (507)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHcCCeeeEEee---cCcchhcchHHHHHHHHHHCCCEEEeeCCcE
Confidence 2235678899999999999999999 544 445556678999999999999999 655544
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=4.7e-25 Score=247.60 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=81.3
Q ss_pred CcceeEEeehhhh-hHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-
Q 005849 539 PTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG- 616 (674)
Q Consensus 539 P~d~~~~G~Dii~-~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~- 616 (674)
-+|+-..|+|+.. .|.....+....+....|+. ++||++++.+|+|||||+||+|++.|+++.+++|++|||++..
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4688899999999 88776665554666777854 7899999777999999999999999999999999999888754
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIERLTANKAFTNKLWNAG 643 (674)
Q Consensus 617 ~~~~d~~fs~~~l~~~~~~~~kl~n~~ 643 (674)
++.++++|+. +..+.+-+.++.+.+
T Consensus 312 ~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 312 KPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 4599999998 666555555555443
No 62
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.86 E-value=2.3e-21 Score=216.33 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC--------CchhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~--------Gl~~e~~ve~~~~~~g~~~~~l 161 (674)
++++|++|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|++ ++| +...+-.|.+...+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-----~~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-----EELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-----HHHHHhCCCcceec
Confidence 3699999977 999999999999999999999999999999999999999 233 11111124332222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~ 195 (674)
.+ .|- .+..|++++...+.+.|..||+.+++-
T Consensus 92 pd-p~g-~~~s~~~h~~~~~~~~l~~~gi~~e~~ 123 (515)
T TIGR00467 92 PD-PEG-CKTSYAEHFLIPFLESLPVLGINPEFI 123 (515)
T ss_pred CC-CCC-CcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 11 110 134788999999999999999988854
No 63
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.86 E-value=2e-20 Score=213.80 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHH----
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA---- 153 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~---- 153 (674)
...|+..... +++++|..++|||+|+|||||+|+.+++|+++|++++.||+|....-..+.|..+-..+.-....
T Consensus 101 ~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~ 179 (566)
T TIGR00456 101 KEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEK 179 (566)
T ss_pred ccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCcc
Confidence 3567765443 67899999999999999999999999999999999999999998776666665432222111000
Q ss_pred ------------------------cCCCcc----------ccCHHHHHHHHHHH-HHHHHHHHHHHHHHhccccC-CC--
Q 005849 154 ------------------------EGIKRV----------ELSRDEFTKRVWEW-KEKYGGTITSQIKRLGASCD-WT-- 195 (674)
Q Consensus 154 ------------------------~g~~~~----------~l~~e~f~~~~~~~-~~~~~~~~~~~l~~lgi~~D-w~-- 195 (674)
...... +-++++.. .+|+. ++...+.+++++++|||.+| |.
T Consensus 180 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~-~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E 258 (566)
T TIGR00456 180 LNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAI-KLWKRLVEYSLEGIKETLARLNIHFDSFVWE 258 (566)
T ss_pred ccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCceeeeecc
Confidence 000000 01111222 35544 45566779999999999999 54
Q ss_pred CccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 196 ~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.+.+ +...+..++++|.++|++|++
T Consensus 259 ~e~~-----~~~~~~~v~~~L~~~g~~~~~ 283 (566)
T TIGR00456 259 GESV-----KNGMVPKVLEDLKEKGLVVED 283 (566)
T ss_pred cccc-----ccccHHHHHHHHHHCCCEEEc
Confidence 3222 445688999999999999976
No 64
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.86 E-value=2.1e-21 Score=188.75 Aligned_cols=129 Identities=37% Similarity=0.657 Sum_probs=99.6
Q ss_pred eeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhh---------------------------------hccCc
Q 005849 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (674)
Q Consensus 252 ~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~---------------------------------~l~G~ 298 (674)
.-..++|++.+.+..|.|+||||+||+|.+.|++.|+++.-+ -+.|.
T Consensus 8 ~G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~ 87 (185)
T PF13603_consen 8 EGAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGL 87 (185)
T ss_dssp EEEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEE
T ss_pred ccEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCC
Confidence 357889999998889999999999999999999999997321 13578
Q ss_pred EEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC----------------CCcccccc
Q 005849 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVA 362 (674)
Q Consensus 299 ~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~----------------~G~~~e~~ 362 (674)
.+.||++ ++++||+.++||.+++|||+||.||+|+++|+++|++|+||+..++.. +|.++ ++
T Consensus 88 ~aihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS 165 (185)
T PF13603_consen 88 YAIHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NS 165 (185)
T ss_dssp EEE-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SS
T ss_pred EEECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eC
Confidence 8999996 899999999999999999999999999999999999999998877642 35565 78
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q 005849 363 GLFRGLDRFEARKKLWSDLE 382 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~ 382 (674)
|.|.||+..+|+++|++.|+
T Consensus 166 ~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 166 GEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999885
No 65
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.8e-20 Score=205.69 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=109.4
Q ss_pred HHHHHHHHHHh-CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHH
Q 005849 67 SEERIYNWWES-QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (674)
Q Consensus 67 ~E~~~~~~W~~-~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~ 145 (674)
..+.+++...+ ...|+......+++++|...+|||+|+|||||+|+.+++|+++|-++..||+|....-.++.|..+-.
T Consensus 93 ~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~ 172 (577)
T COG0018 93 LAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGM 172 (577)
T ss_pred HHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHH
Confidence 56778888887 45565665556789999999999999999999999999999999999999999998777777754321
Q ss_pred HHH----------------------------HHHHHcCCCcc-ccCHHHHHH--------HHHH-HHHHHHHHHHHHHHH
Q 005849 146 VVE----------------------------KMLAAEGIKRV-ELSRDEFTK--------RVWE-WKEKYGGTITSQIKR 187 (674)
Q Consensus 146 ~ve----------------------------~~~~~~g~~~~-~l~~e~f~~--------~~~~-~~~~~~~~~~~~l~~ 187 (674)
.+- +.+.+ ..... +..++.+.+ ..|+ +++.....|++++.+
T Consensus 173 l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~-~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~ 251 (577)
T COG0018 173 LALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEE-DPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDR 251 (577)
T ss_pred HHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHh-CcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11111 01100 112221110 3343 466677889999999
Q ss_pred hccccC-C--CCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 188 LGASCD-W--TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 188 lgi~~D-w--~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
||+.+| | +.+.+ +...+..++..|.++|++|+..
T Consensus 252 l~V~fD~~~~E~e~~-----~~~~~~~vv~~L~~~~~~~e~~ 288 (577)
T COG0018 252 LGVKFDVYDSEGESF-----YNGKVEKVVEDLEEKGLLYEDD 288 (577)
T ss_pred hCcccceeeccchhh-----hcccHHHHHHHHHhcCCEeeeC
Confidence 999999 5 33333 4457999999999999999943
No 66
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=5.3e-18 Score=193.38 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCC
Q 005849 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (674)
Q Consensus 78 ~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~ 157 (674)
...|+.....++++++|...+|||+|+|||||+|+.+++|+++|-++..||+|....-..+.|..+-..+... .+.|..
T Consensus 101 ~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~-~~~~~~ 179 (562)
T PRK12451 101 KEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAY-KKWGNE 179 (562)
T ss_pred HhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHH-HHhCCc
Confidence 3457755433467899999999999999999999999999999999999999999988888887654333211 111211
Q ss_pred --cc-------------------------ccCHHHHH---------HHHHHH-HHHHHHHHHHHHHHhccccCCCCcccc
Q 005849 158 --RV-------------------------ELSRDEFT---------KRVWEW-KEKYGGTITSQIKRLGASCDWTRERFT 200 (674)
Q Consensus 158 --~~-------------------------~l~~e~f~---------~~~~~~-~~~~~~~~~~~l~~lgi~~Dw~~~~~T 200 (674)
+. +..++.+. ..+|++ ++...+.+++++++|||.+||..
T Consensus 180 ~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~---- 255 (562)
T PRK12451 180 AVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ---- 255 (562)
T ss_pred cccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----
Confidence 00 00011111 123444 45556779999999999999332
Q ss_pred CChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 201 LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 201 ~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
-+..|...+..++++|.++|++|+....+
T Consensus 256 ~es~~~~~~~~v~~~L~~~g~~~e~dGa~ 284 (562)
T PRK12451 256 GEAFYNDLMEDFIGILEEHDLLEESEGAL 284 (562)
T ss_pred chHhhhhhHHHHHHHHHHCCCEEecCCeE
Confidence 22346667899999999999999876543
No 67
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.77 E-value=2.8e-18 Score=172.75 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=105.3
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
+++|...+|||||+|||||+|+++++|+++||+|++|++|.+..++|++|.+++..++... .+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-----------------~~ 63 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-----------------KW 63 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-----------------HH
Confidence 4689999999999999999999999999999999999999999999999999766553321 14
Q ss_pred HHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~ 234 (674)
+++++.+.+.+++++++|||.+| |.+ +.+ +...++.++++|.++|++|+....+++|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d~~~~---es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFDVWFG---ESS--YLGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCceecc---hhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 57788899999999999999999 665 333 378899999999999999999988877754
No 68
>PLN02286 arginine-tRNA ligase
Probab=99.76 E-value=9.1e-17 Score=183.48 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCC--Ccc------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI--KRV------ 159 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~--~~~------ 159 (674)
++++++|...+|||+|+|||||+|+.+++|+++|.++..||+|....-..+.|..+-..+.......+. .++
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 194 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGD 194 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHH
Confidence 357899999999999999999999999999999999999999999888888886654333221111110 000
Q ss_pred -------------------cc----------CHHHHHHHHHHH-HHHHHHHHHHHHHHhccccC-CCCccccCChhHHHH
Q 005849 160 -------------------EL----------SRDEFTKRVWEW-KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRA 208 (674)
Q Consensus 160 -------------------~l----------~~e~f~~~~~~~-~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~ 208 (674)
+. ++++.. .+|+. .+.....+++++.+|||.+| +.. ..|...
T Consensus 195 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~-~lw~~~~~~~~~~~~~~y~~l~V~fd~~ge------s~y~~~ 267 (576)
T PLN02286 195 LQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYR-AAWAKICEISRREFEKVYQRLRVELEEKGE------SFYNPY 267 (576)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHhCCeeeecCc------hhhhhh
Confidence 00 111111 23433 44455679999999999999 322 235566
Q ss_pred HHHHHHHHHHcCceEEcccce
Q 005849 209 VVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 209 v~~~f~~L~~kGliy~~~~~v 229 (674)
+..++.+|.++|++|+....+
T Consensus 268 ~~~vi~~L~~~g~~~e~dGa~ 288 (576)
T PLN02286 268 IPGVIEELESKGLVVESDGAR 288 (576)
T ss_pred HHHHHHHHHHCCCEEeeCCce
Confidence 799999999999999876543
No 69
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.70 E-value=8.6e-17 Score=173.90 Aligned_cols=150 Identities=25% Similarity=0.325 Sum_probs=95.1
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHH---HH--
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE---KM-- 150 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve---~~-- 150 (674)
+++..| ......+++++|...+|||+|+|||||+|+.+++|+|+|-++..||+|....-..+.|..+-..+. +.
T Consensus 7 ~~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~ 85 (354)
T PF00750_consen 7 EKGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGD 85 (354)
T ss_dssp HHGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHH
T ss_pred hcchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhh
Confidence 345556 444456788999999999999999999999999999999999999999999888888875432211 00
Q ss_pred ----------------------HHHcCC---Ccccc---CHHHHHH------HHHH-HHHHHHHHHHHHHHHhccccC-C
Q 005849 151 ----------------------LAAEGI---KRVEL---SRDEFTK------RVWE-WKEKYGGTITSQIKRLGASCD-W 194 (674)
Q Consensus 151 ----------------------~~~~g~---~~~~l---~~e~f~~------~~~~-~~~~~~~~~~~~l~~lgi~~D-w 194 (674)
+..... ...++ .++.+.+ ...+ |.....+.++++|+++++.+| |
T Consensus 86 ~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~ 165 (354)
T PF00750_consen 86 EELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVW 165 (354)
T ss_dssp HHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEE
T ss_pred hhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 000101 01111 1111111 1222 333366778999999999999 5
Q ss_pred CCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 195 TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 195 ~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
..+ .+-.+...+..++++|.++|++|+....+
T Consensus 166 ~~E---~Es~~~~~v~~vl~~L~e~g~~~~~dGa~ 197 (354)
T PF00750_consen 166 FDE---SESFYSGKVDEVLERLKEKGLLYESDGAL 197 (354)
T ss_dssp EEH---CHHHHTTHHHHHHHHHHCTTTEEEETTEE
T ss_pred ccc---chhhhhhHHHHHHHHHHhCCcEEecCCcE
Confidence 432 23336677899999999999999866543
No 70
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.48 E-value=2.1e-14 Score=152.02 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=48.6
Q ss_pred cceeEEeehhhh---hHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC
Q 005849 540 TTMLETGHDILF---FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (674)
Q Consensus 540 ~d~~~~G~Dii~---~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~ 616 (674)
+|+-..|+|..- .+-..--+.--.+....| .-+.-.++++..|+|||||+||+++++|+++-+.+++|||+++..
T Consensus 235 VdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~ 312 (360)
T PF01921_consen 235 VDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMART 312 (360)
T ss_dssp -SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHCS
T ss_pred ceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHccc
Confidence 456667999876 454333322234555556 457788999777779999999999999999999999999999999
Q ss_pred CCCCccccCHH-HHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIE-RLTANKAFTNKL 639 (674)
Q Consensus 617 ~~~~d~~fs~~-~l~~~~~~~~kl 639 (674)
.|.+..+|+.+ .+-...+-..++
T Consensus 313 ~P~~~~~~~~~~~i~~~~Deyd~~ 336 (360)
T PF01921_consen 313 KPNKAKDFSFDLVIPRLYDEYDRL 336 (360)
T ss_dssp -TTS-EEE--STTHHHHHHHHHHH
T ss_pred CCCcceEeccCcchHHHHHHHHHH
Confidence 99776777766 454433333333
No 71
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.2e-11 Score=131.29 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=74.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chhHHHHHHHHHHcCCCcccc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--------l~~e~~ve~~~~~~g~~~~~l 161 (674)
..++|.+| -.|+|.+|||+++-.+.+|+++|-+|.+|+.|.+++=+|+.. +|-+...++. .|++..++
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Y---lg~Plt~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQY---LGMPLTEI 94 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHH---cCCccccC
Confidence 67999999 699999999999999999999999999999999999998875 1211222222 24443333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005849 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195 (674)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~ 195 (674)
.. .|- -|..|++++...+.+-|..+|+.+.|-
T Consensus 95 Pd-P~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 95 PD-PFG-CCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CC-Ccc-ccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 21 010 244678899999999999999877743
No 72
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.27 E-value=1e-11 Score=117.23 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=63.1
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+.+.|||||+|||||+++++++|+++||+|++|++|.++.|+|++|.++... +.+.+.+++ +++
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~----a~~~~~~~~------------~~~ 65 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDP----ANKKGENAK------------AFV 65 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHH----HHhcCCCHH------------HHH
Confidence 4567999999999999999999999999999999999999999999885443 344455554 566
Q ss_pred HHHHHHHHHHHH
Q 005849 175 EKYGGTITSQIK 186 (674)
Q Consensus 175 ~~~~~~~~~~l~ 186 (674)
+.+.+.++++++
T Consensus 66 ~~~~~~~~~~~~ 77 (143)
T cd00802 66 ERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHH
Confidence 777777777777
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.23 E-value=1.5e-09 Score=122.49 Aligned_cols=97 Identities=25% Similarity=0.281 Sum_probs=69.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|+|||.||||||++.++.+.+|| +|...++.=+|+.--.+ .+
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-------------~R-------------- 149 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-------------KR-------------- 149 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-------------cc--------------
Confidence 44556799999999999999999999999 34444444444432110 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. +...++.+...+...+|.++|++|..
T Consensus 150 ~~~e~~~~I~edL~wLGl--~wD~~--~~qSdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 150 PDPEAYDMILEDLKWLGV--KWDEV--VIQSDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred chHHHHHHHHHHHHHcCC--CCCCc--cCcccCHHHHHHHHHHHHHcCCCccC
Confidence 013455789999999998 55544 34556778889999999999999965
No 74
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.12 E-value=3.9e-09 Score=118.13 Aligned_cols=95 Identities=24% Similarity=0.244 Sum_probs=65.9
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+ ++. +.
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDt--------------------D~~------------R~ 48 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDT--------------------DLE------------RN 48 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC--------------------CCc------------cC
Confidence 3455699999999999999999999998 3344333332222 221 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| +.+|+. .++.+..+++..+|.++|++|..
T Consensus 49 ~~~~~~~i~~~L~wlGl~~d-e~~~~Q--S~r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 49 IEEAEEAILEGLKWLGISWD-EGPYYQ--SQRLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred ChHHHHHHHHHHHHCCCCCC-CCeeeh--hCCHHHHHHHHHHHHHcCCEEec
Confidence 24567789999999998544 134332 23456678889999999999975
No 75
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.07 E-value=1.1e-08 Score=114.46 Aligned_cols=95 Identities=24% Similarity=0.227 Sum_probs=67.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+ ++. +
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDt--------------------D~~------------R 50 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDT--------------------DQE------------R 50 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC--------------------CCC------------C
Confidence 45556799999999999999999999998 2344333332222 221 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc--------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE--------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~--------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
....+.+.|.++|+.||+..| .. |+ ..++.+..++...+|.++|++|..
T Consensus 51 ~~~~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~--QS~r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 51 STEEAEEAILEGLKWLGLDWD--EGPDGGPYGPYR--QSERLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred CChHHHHHHHHHHHHCCCCCC--CCCccCCCCcee--hhcCHHHHHHHHHHHHHcCCeeec
Confidence 224567789999999998655 32 33 233457788999999999999974
No 76
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.92 E-value=3.7e-08 Score=108.69 Aligned_cols=94 Identities=29% Similarity=0.358 Sum_probs=66.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
.+-.+|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+| ++ ..
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD--------------------~~------------Rs 49 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTD--------------------LE------------RS 49 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCC--------------------cc------------cc
Confidence 4455699999999999999999888887 23343333322222 11 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.+++.+.|+++|++||+.+| .. ....+....+++++.+|.++|++|..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWD--RT--FRQSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 25677789999999999877 21 22333446789999999999999875
No 77
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.90 E-value=1.6e-07 Score=105.96 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=72.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
.-+++-.||.|||.||||||++.++.+.+|| ...| .++.=+|+.- +..
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTD-----------------p~R---------- 139 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTD-----------------PRR---------- 139 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCC-----------------ccc----------
Confidence 3467777799999999999999999999997 2334 3444344432 110
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. +...+|.....+...+|.++|++|..
T Consensus 140 --~~~e~~~~I~edL~wLGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 140 --VKPEAYDMILEDLDWLGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred --ccHHHHHHHHHHHHHcCCCCC--cc--ccccccHHHHHHHHHHHHHcCCceee
Confidence 113577789999999998754 33 45566788899999999999999986
No 78
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.87 E-value=3.4e-07 Score=102.38 Aligned_cols=95 Identities=27% Similarity=0.415 Sum_probs=70.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+|| ...|.-++.. |+ .+++ +
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRi---ED-----------------TDp~------------R 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRF---DD-----------------TNPS------------K 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---CC-----------------CCCC------------c
Confidence 66777799999999999999999999998 3445444332 22 2222 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| ..+ ...++.+...+...+|.++|++|..
T Consensus 58 ~~~e~~~~I~~dL~WLGl~wD--~~~--~qSdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKPD--SVS--FTSDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred cchHHHHHHHHHHHHhCCCCC--CCc--cccccHHHHHHHHHHHHHcCCeEec
Confidence 124677889999999998644 443 3445677889999999999999986
No 79
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.83 E-value=2e-07 Score=102.46 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 005849 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (674)
Q Consensus 97 ~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~ 176 (674)
..|.|||.|||||+++.++.-.+|| ...|.-++.+=-+| +. +...+
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD--------------------~~------------R~~~e 49 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTD--------------------KE------------RNIEG 49 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC--------------------CC------------cCChH
Confidence 4599999999999999999999998 34444343332222 21 11245
Q ss_pred HHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 177 ~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
+.+.|.++|+.||+. |+..|+. .++.+...+..++|.++|.+|..
T Consensus 50 ~~~~I~~~L~WlGl~--wDe~y~Q--SeR~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 50 KDKEILEILNLFGIS--WDKLVYQ--SENLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHHcCCC--CCCCeeh--hccHHHHHHHHHHHHHcCCeeee
Confidence 677899999999985 4455543 33456778899999999999975
No 80
>PLN02907 glutamate-tRNA ligase
Probab=98.79 E-value=8.8e-07 Score=103.67 Aligned_cols=108 Identities=24% Similarity=0.384 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCc
Q 005849 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (674)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~ 158 (674)
+.|+.........=+++-.||.|||.||||||++.++...+|| ...|.-++.. |+. ++
T Consensus 200 ~~~~~~L~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~---eDT-----------------dp 257 (722)
T PLN02907 200 GSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRF---DDT-----------------NP 257 (722)
T ss_pred ccccccCccCCCCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---cCC-----------------CC
Confidence 4454443333223367777899999999999999999999998 4455444332 222 22
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.. ...++.+.|.++|+.||+..| ..+ ...+|.....+...+|.++|++|.
T Consensus 258 ~r------------~~~e~~~~I~~dl~wLG~~~d--~~~--~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 258 SK------------ESDEFVENILKDIETLGIKYD--AVT--YTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred Cc------------CChHHHHHHHHHHHHcCCCCC--Ccc--cccccHHHHHHHHHHHHHcCCeee
Confidence 11 124677889999999998655 443 345567788999999999999997
No 81
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.77 E-value=1.4e-06 Score=97.75 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=67.0
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||- ..|.-++.. |+. ++..
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRi---eDT-----------------d~~r------------ 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRF---DDT-----------------NPEK------------ 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCC-----------------CCCc------------
Confidence 567777999999999999999999999983 345433332 322 2211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| +..++ ..++.....+...+|.++|++|..
T Consensus 76 ~~~e~~~~I~~dL~wLGi~~d-~~~~~--qS~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 76 EDQEYVDSIKEDVRWLGFDWS-GELRY--ASDYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred CChHHHHHHHHHHHHcCCCCC-CCcee--eecCHHHHHHHHHHHHHcCCEeeC
Confidence 114677889999999998665 22332 334445555666899999999986
No 82
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.77 E-value=4e-07 Score=92.16 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=61.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.||+||+++.++.-.+||- ..|.-++.+=-+| +. +.
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar~--~~G~~iLRieDtD--------------------~~------------R~ 48 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFARK--YGGKFILRIEDTD--------------------PE------------RS 48 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEeCcCC--------------------CC------------CC
Confidence 44557999999999999999999999983 3444433322222 21 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCC-ccccCChhHHHHHHHHHHHHHHcC
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKG 220 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kG 220 (674)
..++.+.|.++|+.||+..| . .++ ..++.+..++..++|.++|
T Consensus 49 ~~~~~~~I~~dL~wlGl~wd--~~~~~--QS~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 49 RPEYVESILEDLKWLGLDWD--EGPYR--QSDRFDLYRAYAEELIKKG 92 (230)
T ss_pred ChHHHHHHHHHHHHcCCCCC--CCeee--hhcCHHHHHHHHHHHHHcC
Confidence 24577789999999998555 4 333 3345667788888999988
No 83
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.76 E-value=3e-07 Score=102.67 Aligned_cols=95 Identities=25% Similarity=0.297 Sum_probs=67.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-..|.|||.|||||+++.++.-.+|| ...|.=++.+=-+|. . +.
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~--------------------~------------R~ 51 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK--------------------E------------RS 51 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc--------------------c------------cc
Confidence 4455699999999999999999999999 445554444333322 1 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| ..+|+.+ +......+..++|.++|++|..
T Consensus 52 ~~~~~~~i~~~L~WLGl~wD-e~py~QS--eR~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGLDWN-GEVIFQS--KRNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceeEe--CcHHHHHHHHHHHHHcCCeEEe
Confidence 24567789999999998544 1344432 2456788999999999999976
No 84
>PLN02627 glutamyl-tRNA synthetase
Probab=98.64 E-value=2.5e-06 Score=95.60 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=67.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-..|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+|. . +
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~--------------------~------------R 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL--------------------A------------R 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC--------------------C------------C
Confidence 45555689999999999999999999999 445544444322222 1 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. |+ -.++.+...+..++|.++|++|..
T Consensus 92 ~~~e~~~~I~~~L~WLGl~wD--egp~~gg~~gpy~--QSeR~~~Y~~~a~~Li~~G~AY~C 149 (535)
T PLN02627 92 STKESEEAVLRDLKWLGLDWD--EGPDVGGEYGPYR--QSERNAIYKQYAEKLLESGHVYPC 149 (535)
T ss_pred CChHHHHHHHHHHHHcCCCCC--cCcccCCCCCCee--eeccHHHHHHHHHHHHHcCCeeec
Confidence 124567789999999997554 32 22 233456778899999999999964
No 85
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.59 E-value=5.5e-06 Score=97.00 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=70.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+|| +..|.-++. +|+. ++..
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR---~eDT-----------------d~~r------------ 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLR---MDDT-----------------NPET------------ 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCC-----------------CCCc------------
Confidence 67778899999999999999999999998 334533333 2332 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| .. .+...+|.....+...+|.++|++|..
T Consensus 78 ~~~e~~~~I~~dl~wLG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 78 EDTEYVEAIKDDVRWLGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred CChHHHHHHHHHHHHcCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCcccC
Confidence 114677889999999998655 32 133455777888899999999999975
No 86
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.53 E-value=2.2e-07 Score=94.36 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=69.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.+++|| ++.+.++.-+|+.--+. ++ .
T Consensus 3 ~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r------------~~---------------~ 50 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT------------KR---------------P 50 (240)
T ss_pred eEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc------------cc---------------c
Confidence 3445699999999999999999999999 56666666666543210 00 1
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
...+.+.|.++|+.||+ +|+..+ .-.++.+..+++.++|.++|++|.
T Consensus 51 ~~~~~~~i~~dL~wLGl--~~d~~~--~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 51 DPEAYDMIPEDLEWLGV--KWDEVV--IASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred hHHHHHHHHHHHHHcCC--CCCCcc--chhccHHHHHHHHHHHHHcCCccc
Confidence 13445568999999999 555443 344567778888999999999997
No 87
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.2e-05 Score=85.43 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC------------
Q 005849 67 SEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP------------ 134 (674)
Q Consensus 67 ~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~------------ 134 (674)
++.-.+..|++...|+.+....+++.+|...+||.+.+.|+||.|+.+++-+++.-++..|++|..+.
T Consensus 87 ~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 57778999999999998865567899999999999999999999999999999999999999998852
Q ss_pred --CCCCCCc-------hhHHHHHHH-----HHHcCCCccccCHHHHH---------HHHHH-HHHHHHHHHHHHHHHhcc
Q 005849 135 --GTDHAGI-------ATQLVVEKM-----LAAEGIKRVELSRDEFT---------KRVWE-WKEKYGGTITSQIKRLGA 190 (674)
Q Consensus 135 --G~D~~Gl-------~~e~~ve~~-----~~~~g~~~~~l~~e~f~---------~~~~~-~~~~~~~~~~~~l~~lgi 190 (674)
||...|- |++...+.. .++...+..+..++-|. -+.|+ +.+.-+....+...|||+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 5555554 333222111 11222222222222222 13343 445556667788999999
Q ss_pred ccC-CCCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 191 SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 191 ~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
.|| |.-+ +.-+.+..+.+...+...|++....+..
T Consensus 247 ~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~~e~dG~~ 282 (567)
T KOG1195|consen 247 KFDEYSGE----SQVSNEKMQEALDLLRSANLTEEIDGTI 282 (567)
T ss_pred eeeeccch----HHHHHHHHHHHHHHHHhcCCcccCCCcE
Confidence 999 4322 2347788999999999999776665544
No 88
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.15 E-value=7.1e-06 Score=83.25 Aligned_cols=93 Identities=26% Similarity=0.310 Sum_probs=67.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.||+||+++.++.-.+||- ..|.-++. +| ..++. +.
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLR---ie-----------------DtD~~------------R~ 48 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLR---FD-----------------DTNPE------------KE 48 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ec-----------------CCCCc------------cc
Confidence 45567999999999999999999999983 34433322 22 22222 12
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| ..+ ...++.+..++...+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~wD--~~~--~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKPY--KVT--YASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCCC--Cce--ecccCHHHHHHHHHHHHHcCCeec
Confidence 24567789999999998655 433 344566788999999999999999
No 89
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.14 E-value=5.5e-06 Score=86.17 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=67.5
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+-.+|.|||.|||||+++.++.-.+|| +..|.=++.+=-+|. . +..
T Consensus 3 ~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~--------------------~------------R~~ 48 (272)
T TIGR03838 3 GRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP--------------------P------------REV 48 (272)
T ss_pred eeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC--------------------C------------CCC
Confidence 345699999999999999999999999 445554444333332 1 112
Q ss_pred HHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 175 ~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.++.+.|.++|+.||+..| .... ...++.+...++.++|.++|++|.-
T Consensus 49 ~~~~~~I~~dL~wLGl~wD--e~~~-~QS~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 49 PGAADDILRTLEAYGLHWD--GEVV-YQSQRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred hHHHHHHHHHHHHcCCCCC--CCee-eeeCCHHHHHHHHHHHHHcCCEEec
Confidence 4567789999999998555 3211 2334567788999999999999976
No 90
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.14 E-value=8.9e-06 Score=92.19 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=70.0
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
-+++-.||.|||.||||||++.++...+|| ...|.-++. +|+ .++..
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLR---iED-----------------TDp~R----------- 98 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFR---FDD-----------------TNPSK----------- 98 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcC-----------------CCCcc-----------
Confidence 366777799999999999999999999998 334543333 222 22221
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. .+...+|.....+...+|.++|++|-.
T Consensus 99 -~~~e~~d~IleDL~WLGl--~wDe~-~~~QSdr~d~y~e~a~~Li~~G~AY~c 148 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLGV--SWDVG-PTYSSDYMDLMYEKAEELIKKGLAYCD 148 (601)
T ss_pred -cCHHHHHHHHHHHHHCCC--CCCCc-eeeccccHHHHHHHHHHHHHcCCEEEe
Confidence 124677889999999998 55442 123445778889999999999999943
No 91
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.2e-06 Score=95.36 Aligned_cols=96 Identities=25% Similarity=0.295 Sum_probs=70.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++.-.+|| ...|.-++.+= ..+++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiE--------------------DTD~~R------------ 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIE--------------------DTDPER------------ 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEec--------------------CCCCCC------------
Confidence 67777799999999999999999999999 33444443322 222221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+ +|+.. .....++.....+...+|.++|++|..
T Consensus 56 ~~~e~~~~I~~~L~WLGl--~wde~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 56 ETPEAEDAILEDLEWLGL--DWDEG-PYYQSERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred CCHHHHHHHHHHHHhcCC--CCCCc-eeehhhhHHHHHHHHHHHHHCCCeEEe
Confidence 124567789999999997 55553 123445677888999999999999976
No 92
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.07 E-value=6.1e-06 Score=88.06 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=63.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| +..|.-++.+=-+|. . ..
T Consensus 3 ~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~--------------------~------------R~ 48 (314)
T PF00749_consen 3 RTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP--------------------E------------RC 48 (314)
T ss_dssp EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST--------------------T------------TC
T ss_pred eEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc--------------------c------------cc
Confidence 3445699999999999999999999998 455544444322222 1 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..|. .+| ...++.+..++..++|.++|++|.-
T Consensus 49 ~~~~~~~i~~~L~wlGl~~D~-~~~--~QS~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 49 RPEFYDAILEDLRWLGLEWDY-GPY--YQSDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHHHHT---ST-CEE--EGGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhHHHHHHhheeEEEEecCC-eEE--eHHHHHHHHHHHHHHHhhcCCCccc
Confidence 245677899999999987772 333 3455677889999999999999975
No 93
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.07 E-value=1.2e-05 Score=90.48 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=68.0
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||. ..|.-++.. |+. ++..
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRi---EDT-----------------Dp~r------------ 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRY---DDT-----------------NPET------------ 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCC-----------------Cccc------------
Confidence 456666999999999999999999999984 345443332 222 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
...++.+.|.++|+.||+..| ..+ ...+|.+...+...+|.++|++|...
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred cChHHHHHHHHHHHHcCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEcC
Confidence 124677889999999998655 332 33456566667778999999999863
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.03 E-value=1.2e-05 Score=90.21 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=67.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.||.|||.||||||++.++...+|| ...|.-++.. |+. ++. +.
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRi---eDT-----------------d~~------------r~ 47 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRF---DDT-----------------NPV------------KE 47 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---cCC-----------------Ccc------------cC
Confidence 4556799999999999999999999998 3455444332 322 121 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
..++.+.|.++|+.||+..| +..++ ..++.....+...+|.++|++|...
T Consensus 48 ~~e~~~~I~~dL~wLG~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 48 DPEYVESIKRDVEWLGFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEeec
Confidence 24677889999999998655 22222 3345555667779999999999864
No 95
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.1e-05 Score=82.55 Aligned_cols=147 Identities=18% Similarity=0.307 Sum_probs=96.4
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC----CCchhHHHHHHH-------------
Q 005849 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH----AGIATQLVVEKM------------- 150 (674)
Q Consensus 88 ~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~----~Gl~~e~~ve~~------------- 150 (674)
..++.+|.+.+||.-..+|+||+|+.+++|.++|-....|++|+...-.-+ +|+-|+...++.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 357899999999999999999999999999999999999999999743333 344333322210
Q ss_pred --HHHcCCCccccCHHHHHHH-----------------HHHH-HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHH
Q 005849 151 --LAAEGIKRVELSRDEFTKR-----------------VWEW-KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (674)
Q Consensus 151 --~~~~g~~~~~l~~e~f~~~-----------------~~~~-~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 210 (674)
.-++.+.+-+ .+|+|.++ .|.. ++--...+....++|.|++-=.- +.-|+..+.
T Consensus 266 QvFYkeSKkrFD-~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~G-----ESFYq~~m~ 339 (656)
T KOG4426|consen 266 QVFYKESKKRFD-EDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERG-----ESFYQDRMA 339 (656)
T ss_pred HHHHHHHHhccC-cCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcc-----hhhhhhHHH
Confidence 0011111111 12455542 2222 23233446667888888776222 334778889
Q ss_pred HHHHHHHHcCceEEccc-ceeccCCCCcccc
Q 005849 211 EAFIRLHEKGLIYQGSY-MVNWSPNLQTAVS 240 (674)
Q Consensus 211 ~~f~~L~~kGliy~~~~-~v~w~p~~~t~ls 240 (674)
++++.|..+|++...+. .+.|-+.|.-+|.
T Consensus 340 ~vveel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 340 EVVEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99999999999998764 5567666655443
No 96
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.94 E-value=2.2e-05 Score=82.66 Aligned_cols=96 Identities=24% Similarity=0.265 Sum_probs=66.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+||- ..|.=++.+ |+ .++. +
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~--~~G~~iLRi---ED-----------------tD~~------------R 51 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARA--HGGRWLLRI---ED-----------------IDPP------------R 51 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEE---Cc-----------------CCCC------------c
Confidence 445566999999999999999999999883 234333322 22 1111 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| ...|+ -.++.+..+++.++|.++|++|.-
T Consensus 52 ~~~~~~~~I~~dL~wlGl~wD-e~~~~--QS~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 52 EVPGAADAILADLEWLGLHWD-GPVLY--QSQRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred cchHHHHHHHHHHHHCCCCCC-CCceE--eeccHHHHHHHHHHHHHCCCceec
Confidence 124567789999999998544 12333 334567889999999999999975
No 97
>PLN02859 glutamine-tRNA ligase
Probab=97.85 E-value=5.2e-05 Score=88.22 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=65.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||.|||.||||||++.++...+||. ..|.-.+.. |+. ++..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~LRi---eDT-----------------dp~r------------ 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYLRF---DDT-----------------NPEA------------ 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---cCC-----------------CCCc------------
Confidence 566777999999999999999999999995 345433332 322 2221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~ 226 (674)
...++.+.|.++|+.||+ +|+..+++ .+|.+...+.-.+|.++|++|...
T Consensus 311 ~~~e~~~~I~edL~WLG~--~~d~~~~q--Sd~f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 EKKEYIDHIEEIVEWMGW--EPFKITYT--SDYFQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred cchHHHHHHHHHHHHcCC--CCCCcccc--cHhHHHHHHHHHHHHHcCCeEecc
Confidence 124677889999999995 56554433 333322333457799999999853
No 98
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00019 Score=78.63 Aligned_cols=99 Identities=22% Similarity=0.377 Sum_probs=72.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.||-|+|.||||||...++---+|- +.+| ..++-+|+.- | .+
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G---~LIvRFDDTN-P----------------aK------------ 246 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG---KLIVRFDDTN-P----------------AK------------ 246 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc---eEEEEecCCC-c----------------ch------------
Confidence 45566799999999999998776433321 1233 3445566643 1 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
-.++|.+.|.+++..|||..| .+|+..+|-..+...-.+|.+.|.+|-+..|+
T Consensus 247 E~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 247 ENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 015677889999999999988 45778889888999999999999999988765
No 99
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.55 E-value=0.00031 Score=71.83 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=60.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| +..|.-++.+=-+|. . +.
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd~--------------------~------------r~ 48 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTDQ--------------------E------------RS 48 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCCC--------------------C------------CC
Confidence 3445699999999999999999999888 334533322222221 1 01
Q ss_pred HHHHHHHHHHHHHHhccccCCCC---------ccccCChhHHHHHHHHHHHHHHcC
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKG 220 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kG 220 (674)
..++.+.|.++|..||+..| . .|... ...+....+.++|.++|
T Consensus 49 ~~~~~~~i~~dL~wlGl~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 49 VPEAEEAILEALKWLGLDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred chHHHHHHHHHHHHcCCCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 13566788999999997544 4 34433 35667788889999998
No 100
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0023 Score=71.04 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=61.2
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~ 171 (674)
=+++-.||-|||.|||||+-..-+-=-+|++ +.|..-+. +|+. .|+..
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDT-----------------NPEkE---------- 295 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDT-----------------NPEKE---------- 295 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCC-----------------Ccchh----------
Confidence 3667778999999999999754443333332 23322211 2332 22211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
.++|-..|++....||. ...-.|++.+|-...-+.-.+|+++|++|..
T Consensus 296 --ee~yf~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 296 --EEEYFESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred --hHHHHHHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 14677788888999984 2323488777766666666889999999964
No 101
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0098 Score=64.22 Aligned_cols=132 Identities=19% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 005849 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (674)
Q Consensus 96 ~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~ 175 (674)
-.-|-|||.||+|-+|+...-=++|| ...|.-++.+=-+|--- .+.
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R--------------------------------~v~ 82 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR--------------------------------LIR 82 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc--------------------------------ccc
Confidence 33489999999999999988777777 44565555554444321 111
Q ss_pred HHHHHHHHHHHHhccccCCCC----ccccC-ChhHHHHHHHHHHHHHHcCceEEcc----------------ccee-ccC
Q 005849 176 KYGGTITSQIKRLGASCDWTR----ERFTL-DEQLSRAVVEAFIRLHEKGLIYQGS----------------YMVN-WSP 233 (674)
Q Consensus 176 ~~~~~~~~~l~~lgi~~Dw~~----~~~T~-~~~~~~~v~~~f~~L~~kGliy~~~----------------~~v~-w~p 233 (674)
...++|.++|+.+|+..|=.. +|-.+ -.+..+..++..++|.+.|.+|+-. ..++ |+-
T Consensus 83 gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149|consen 83 GSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred chHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc
Confidence 223457888999998777211 12111 2234566778888999999999842 2233 443
Q ss_pred CCCcccccchhhccCCCCeeEEEEEeecC
Q 005849 234 NLQTAVSDLEVEYSEEPGTLYYIKYRVAG 262 (674)
Q Consensus 234 ~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~ 262 (674)
+| .-+|++||+-....|+.+-+.|+++.
T Consensus 163 kc-a~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 163 KC-ANLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hh-cccCHHHHHHHHhcCCCeeEEEecCC
Confidence 33 46889999988888999999999865
No 102
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.37 E-value=0.015 Score=64.45 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCcceeEEeehhhhhHHH-HHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 538 YPTTMLETGHDILFFWVA-RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~-~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
+.+|+.+.|.||...... +-++ --+....| ..+.+.++...+|.|||||.||+||..|=
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~--~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQ--RKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHH--HHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 478999999999764322 2222 22333445 34556777789999999999999997664
No 103
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.27 E-value=0.049 Score=57.12 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcC-CCCcceeEeeeeEeCCCCccccccCCCccCh-------hhHHh----hh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP-------IDTIK----EF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~-------~dll~----~y 604 (674)
+.+|+...|.||.... +.+-++-- +.+ ..| ..+++.++..++|.|||||.+|.++. .++-+ .+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~dsp~~i~~ki~~a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKTSPYEFYQFWINAV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCCCHHHHHHHHHccc
Confidence 4568999999997533 33333322 222 234 34556888899999999999999864 33333 24
Q ss_pred ChhHHHHHHhc
Q 005849 605 GADALRFTISL 615 (674)
Q Consensus 605 gaD~lR~~l~~ 615 (674)
..++++++-+.
T Consensus 228 d~~v~~~~~~~ 238 (273)
T cd00395 228 DSDVINILKYF 238 (273)
T ss_pred HhHHHHHHHHH
Confidence 56666665443
No 104
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.97 E-value=0.021 Score=63.31 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=40.3
Q ss_pred cCCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 537 FYPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
-+.+|+.+.|.||..... .+-++-. +..+.+| .+...++...+|+|||||.||+|+..|
T Consensus 186 ~~~~~i~~gG~DQ~~ni~~grdla~r--~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQLGGSDQWGNILSGRDLQRR--YGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEEeccHHHHHHHHHHHHHHHH--hCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC
Confidence 357999999999986432 2233322 2233332 245566778899999999999999877
No 105
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.64 E-value=0.036 Score=58.05 Aligned_cols=53 Identities=23% Similarity=0.112 Sum_probs=37.3
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccC
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~ 596 (674)
.|+...|.||.... +.+-++-.. ....| -.+.|.++...+|+|||||.+|.+|
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r~--~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRKL--GYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHHh--CCCCc--EEEeeccccCCCCCcccCCCCCccc
Confidence 48999999997543 233333222 23334 3467888889999999999999995
No 106
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=94.63 E-value=0.046 Score=57.87 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCC-ccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGN-VIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN-~i~~~dl 600 (674)
+-+|+.+.|.||.... +++-++-.+......|-...+++.++..++|. |||||.+| .|++.|-
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 3467999999997643 33334333322211122256777788889999 99999999 8887664
No 107
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.40 E-value=0.065 Score=50.33 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=34.2
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccC
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~ 591 (674)
.++++.|.||.. ++.....+...+....+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999987 44444444444433322 255667899877889999995
No 108
>PLN02563 aminoacyl-tRNA ligase
Probab=94.00 E-value=0.088 Score=64.35 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCccccccc--------------ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceE
Q 005849 372 EARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~ 437 (674)
+.-..+...|-++|++.+.+.. +...+.|+|||.+++.+...|||++++++++++++.++. +.
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~~- 288 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--LD- 288 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--cC-
Confidence 4556677788888876654332 122456899999999999999999999999999999974 44
Q ss_pred echhHHHHHHHHHhcC
Q 005849 438 MPERFEKIYNHWLSNI 453 (674)
Q Consensus 438 ~P~~~~~~~~~~l~~l 453 (674)
+|++.++.-.+||-.-
T Consensus 289 wp~~v~~~q~nwiG~s 304 (963)
T PLN02563 289 WPESIKEMQRNWIGRS 304 (963)
T ss_pred CCHHHHHHHHHhcccc
Confidence 6999999999998543
No 109
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.75 E-value=0.076 Score=57.22 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=37.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh--hc--CCCCcceeE--eeeeEeCCCCccccccCCCccCh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE--FT--GSVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDP 597 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~--~~--~~~Pf~~v~--~hg~v~d~~G~KMSKS~gN~i~~ 597 (674)
|.+|+...|.||...+ +++-++-.+- +. -..| ..++ .+.++..++|+|||||.+|.|..
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 4578999999998533 5555543221 11 1234 2222 25566678999999999998854
No 110
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.64 E-value=0.45 Score=48.82 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=50.4
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHh-hhChhHHHHHHhcCC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGT 617 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~-~ygaD~lR~~l~~~~ 617 (674)
-++-.+-|.|++- +..+...+.-++.-..| .+..++.+++.+|.||||+.|+ .++..+.+ .+.+.+++-|++...
T Consensus 118 ~ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 118 GITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CCCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3566788988653 22333333333333334 4556677788999999999999 56777654 478999999987644
Q ss_pred C
Q 005849 618 A 618 (674)
Q Consensus 618 ~ 618 (674)
.
T Consensus 194 ~ 194 (239)
T cd00808 194 W 194 (239)
T ss_pred C
Confidence 4
No 111
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.078 Score=62.98 Aligned_cols=81 Identities=26% Similarity=0.416 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCcccccccccc--------------cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce-Ee
Q 005849 374 RKKLWSDLEETGLAVKKEPHTLR--------------VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IM 438 (674)
Q Consensus 374 r~~i~~~L~~~g~~~~~~~~~~~--------------~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~-~~ 438 (674)
-+-+...|.++|++.+.+....= .-.|||||.+++.+..+|||++++++.+++++.+.. .. ..
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~--l~~~w 214 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK--LATLW 214 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhh--hccCC
Confidence 34577788899987664433222 234899999999999999999999999999988763 44 58
Q ss_pred chhHHHHHHHHHhcCCCc
Q 005849 439 PERFEKIYNHWLSNIKDW 456 (674)
Q Consensus 439 P~~~~~~~~~~l~~l~DW 456 (674)
|++.+..-.+||..-..-
T Consensus 215 PE~Vk~mq~nWIg~s~g~ 232 (814)
T COG0495 215 PETVKGMQRNWIGPSEGY 232 (814)
T ss_pred chhHHHHHHcCcCCCCCe
Confidence 999999999999654433
No 112
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.25 E-value=0.1 Score=56.32 Aligned_cols=58 Identities=26% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc--cccccC-CCccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTL-GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~-gN~i~~~d 599 (674)
+.+|+...|.||... =+++-++-. ++...| ..+.|.++..++|. |||||. +|+|++.|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 467899999999753 244444322 233445 45668888889987 999999 99998755
No 113
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=92.69 E-value=0.17 Score=61.44 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCcccccccc---------------cccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 372 EARKKLWSDLEETGLAVKKEPHT---------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~---------------~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
++-..+...|-++|++.+.+... ....+|+|||.+++.+..+|||++++++++++++.++. ..
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~~ 207 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--LD 207 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--hc
Confidence 45566778888888754322211 11257999999999999999999999999999999975 45
Q ss_pred EechhHHHHHHHHHhcCC
Q 005849 437 IMPERFEKIYNHWLSNIK 454 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~ 454 (674)
.+|++.++...+||..-.
T Consensus 208 ~wp~~v~~~q~~wig~s~ 225 (842)
T TIGR00396 208 HWPESVKEMQRNWIGKSE 225 (842)
T ss_pred cccHHHHHHHHhcccccc
Confidence 699999999999985433
No 114
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.65 E-value=0.12 Score=57.21 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCcceeEEeehhhh-hHHHHHHHHhhhh-cC----CCCcceeEe--eeeEeCCCCccccccCCCccChh
Q 005849 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG----SVPFSHVYL--HGLIRDSQGRKMSKTLGNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~-~w~~~~~~~~~~~-~~----~~Pf~~v~~--hg~v~d~~G~KMSKS~gN~i~~~ 598 (674)
|-+|+...|.||.. .-+++-++...-. .+ ..| ..++. +..+..++|+|||||.+|.|...
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 45788999999984 4455555433211 11 134 22332 34677889999999999999543
No 115
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.94 E-value=0.15 Score=55.10 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=38.7
Q ss_pred cCCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCc----ceeEe-eeeEeCCCC-ccccccCCCccChhh
Q 005849 537 FYPTTMLETGHDILFF-WVARMVMMGIEFTGSVPF----SHVYL-HGLIRDSQG-RKMSKTLGNVIDPID 599 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf----~~v~~-hg~v~d~~G-~KMSKS~gN~i~~~d 599 (674)
.|.+|+...|.||... =+++-++-.+......|+ ..++. |.++..++| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 3568999999999753 355555533321111121 11221 446667777 899999999998644
No 116
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.14 E-value=0.18 Score=55.14 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=39.2
Q ss_pred CcceeEEeehhhhh-HHHHHHHHhh--hhcCCCCcceeEeeeeEeCCCCccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFF-WVARMVMMGI--EFTGSVPFSHVYLHGLIRDSQGRKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~-w~~~~~~~~~--~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~-gN~i~~~d 599 (674)
-.++...|.||... =+++-++-.+ .+.-..| ..+.|.++..++|.|||||. +|.|.+.|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 45788999999753 3555554333 0112345 34556788889999999998 67888655
No 117
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.12 E-value=0.17 Score=54.55 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhh--hc--CCCCcceeEeeee---EeCCCCccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIE--FT--GSVPFSHVYLHGL---IRDSQGRKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~--~~--~~~Pf~~v~~hg~---v~d~~G~KMSKS~gN-~i~~~d 599 (674)
+-+|+...|.||... =+++-++-.+. +. -..| ..++|.+ +..++|+|||||.+| .|.+.|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 346899999999753 35555543332 10 1345 3445544 445667899999997 777644
No 118
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=90.82 E-value=0.3 Score=53.66 Aligned_cols=59 Identities=24% Similarity=0.203 Sum_probs=37.3
Q ss_pred CCcceeEEeehhh-hhHHHHHHHHhhhhcCCCCcceeEeeeeEeCC-CC-ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii-~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~gN-~i~~~d 599 (674)
+.+|+...|.||. ++=+++-++-.+.. ...| .+..|.++..+ +| +|||||.+| +|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~-~~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKI-KKKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCC-CCCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 4578999999995 44455554433211 1123 34456778777 45 799999987 577544
No 119
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=90.44 E-value=0.29 Score=51.56 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=38.7
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhc----CCCCcceeEee--eeEeCCCC--ccccccCC-CccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFT----GSVPFSHVYLH--GLIRDSQG--RKMSKTLG-NVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~----~~~Pf~~v~~h--g~v~d~~G--~KMSKS~g-N~i~~~d 599 (674)
-+++...|.||.... +++-++-.+... -..| ..++| .++..++| .|||||.+ |.|+..|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 458888899997532 444443322210 1234 56667 77877777 49999999 9998876
No 120
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.32 E-value=0.24 Score=52.58 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=38.0
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhh--c--CCCCcceeEeee--eEeCCCC-ccccccCCC-ccChh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEF--T--GSVPFSHVYLHG--LIRDSQG-RKMSKTLGN-VIDPI 598 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~--~--~~~Pf~~v~~hg--~v~d~~G-~KMSKS~gN-~i~~~ 598 (674)
-+++..-|.||..-+ +.|-++-..-. . -..| ..++|. .+..++| +|||||.+| +|...
T Consensus 145 ~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 145 QATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred cCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 356777899987432 44444432220 1 1234 567777 8888999 899999999 77653
No 121
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.75 E-value=0.41 Score=52.63 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=36.9
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
-+|+.+.|.||...- ..+.++.-. ..+.+| .+...++...+|.|||||.||.||.++-
T Consensus 177 ~~di~~gG~DQ~~ni~~g~dLar~~--~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~~ 235 (377)
T TIGR00234 177 NVDLQIGGSDQWGNIRKGRDLIRRN--LPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDEG 235 (377)
T ss_pred cCCeeEecchhHHHHHHHHHHHHHh--cCCCce--eeceeeecCCCCCCccCCCCCcccCCcc
Confidence 368999999996532 222222222 223332 2444566667899999999999998653
No 122
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.61 E-value=0.29 Score=55.91 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCcccccccccc---------------cccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEe
Q 005849 374 RKKLWSDLEETGLAVKKEPHTLR---------------VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 438 (674)
Q Consensus 374 r~~i~~~L~~~g~~~~~~~~~~~---------------~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~ 438 (674)
.+-|.-.|-+.|++-..|....= .-.+||||.++|.+...||||+++++++++++.++ ...=+
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~--~L~~W 237 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLE--TLPEW 237 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHH--hhhhh
Confidence 34455566677765544432222 23479999999999999999999999999999997 34345
Q ss_pred chhHHHHHHHHHh
Q 005849 439 PERFEKIYNHWLS 451 (674)
Q Consensus 439 P~~~~~~~~~~l~ 451 (674)
|+ .++.-.+||-
T Consensus 238 ~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 238 PE-VKDMQRNWIG 249 (876)
T ss_pred hh-HHHHHHhhcc
Confidence 66 7788888884
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.17 E-value=0.44 Score=52.45 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=36.7
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccCh
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~ 597 (674)
-.|+.++|.||-+.+....=+.-- +....+ ..+++.++...+|.|||||.||++|.
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~rr-~g~~~~--~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLIRR-LGQKKV--VGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHHHH-hCCCCe--EEEEeccccCCCCCcccccCCCceEc
Confidence 367899999997665432211111 222223 35666788899999999999996653
No 124
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.80 E-value=0.45 Score=51.45 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhc-C---CCCcceeEe-e-eeEeCCCCc--cccccCC---CccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFT-G---SVPFSHVYL-H-GLIRDSQGR--KMSKTLG---NVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~-~---~~Pf~~v~~-h-g~v~d~~G~--KMSKS~g---N~i~~~d 599 (674)
+.+|+...|.||... =+++-++-.+... + ..| ..++. + .++..++|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 467999999999753 3555554332110 1 245 22332 2 557778876 9999999 8887644
No 125
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=87.66 E-value=0.91 Score=54.94 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCccccccc--------------ccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 371 ~~ar~~i~~~L~~~g~~~~~~~~--------------~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
.++-..+...|-++|++...+.. +...++|++||.+++.+..+|||++++++++++++.++... .
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~-~ 210 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLE-D 210 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhc-c
Confidence 35566788888999986553322 12236789999999999999999999999999999987532 3
Q ss_pred EechhHHHHHHHHHhcCCCc
Q 005849 437 IMPERFEKIYNHWLSNIKDW 456 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~DW 456 (674)
+|++.+..-.+||....-+
T Consensus 211 -w~~~v~~~~~~wig~~~~~ 229 (805)
T PRK00390 211 -WPEKVKTMQRNWIGRSEGA 229 (805)
T ss_pred -CcHHHHHHHHhhccccceE
Confidence 5999999999998654433
No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.18 E-value=2.6 Score=46.19 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
++++.+.+| =-|+|.+||||... ...+.++++ .|++|.+..+=
T Consensus 64 ~~~~~iytG-~~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD 106 (368)
T PRK12285 64 GKPFAVYTG-FMPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIAD 106 (368)
T ss_pred CCCeEEEEc-cCCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecc
Confidence 456777777 46779999999753 445666666 78887776543
No 127
>PLN02486 aminoacyl-tRNA ligase
Probab=85.06 E-value=1.1 Score=49.20 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=40.4
Q ss_pred ceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhhHHhhhChhHHHHHHhc
Q 005849 541 TMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTISL 615 (674)
Q Consensus 541 d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~dll~~ygaD~lR~~l~~ 615 (674)
.++..|.||... =+++-++-. ++...| .++.|.++..+.| .|||||.+| +|+..| .++.++=.+..
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 456679998643 344444432 233356 3444566767777 799999987 798776 45555554443
No 128
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.99 E-value=0.46 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.5
Q ss_pred eeeEeCCCCccccccCCCccChhh
Q 005849 576 HGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 576 hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+..+..++|+|||||.+|.|...|
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC
Confidence 567888899999999999998655
No 129
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=83.69 E-value=2.3 Score=42.83 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=31.0
Q ss_pred eeEEeehhhhhHHHHHHHHhhhhcCC-CCcceeEeeeeEeCCCCccccccCC
Q 005849 542 MLETGHDILFFWVARMVMMGIEFTGS-VPFSHVYLHGLIRDSQGRKMSKTLG 592 (674)
Q Consensus 542 ~~~~G~Dii~~w~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~~G~KMSKS~g 592 (674)
+++.|.|+.. ++.+...+...+.-. .|--..+.+|+++..+|+||||++|
T Consensus 162 i~v~g~~~~~-~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHHG-HFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHHH-HHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 5689999654 344444333333322 2322445669999777999999987
No 130
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=83.16 E-value=2.7 Score=44.07 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-||| .|||||..+ -..+.++++ .|+++.+..|
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~ 39 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG 39 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe
Confidence 4789 699999877 334445554 5899888665
No 131
>PLN02486 aminoacyl-tRNA ligase
Probab=82.21 E-value=7.2 Score=42.96 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 89 SDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
+++|.+.+| =-|+|. |||||+... ..+..+++.-|..+....+ |.
T Consensus 71 ~~~~~vYtG-~~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~ia-D~ 116 (383)
T PLN02486 71 GEKFYLYTG-RGPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQLT-DD 116 (383)
T ss_pred CCCeEEEeC-CCCCCccccHHHHHHH---HHHHHHHHhCCCeEEEEec-CH
Confidence 567888888 689995 999995543 4444555565666655533 53
No 132
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=81.43 E-value=4.6 Score=41.49 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=56.4
Q ss_pred ceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC------c---------cChhhHHh-h
Q 005849 541 TMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN------V---------IDPIDTIK-E 603 (674)
Q Consensus 541 d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN------~---------i~~~dll~-~ 603 (674)
.-.+-|.|.+..- .+..+.-. +.-..| ...-+..+. .+|+||||+++. . .+...+.+ .
T Consensus 125 ThViRg~d~~~~t~~q~~l~~~--Lg~~~P--~~~H~pll~-~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G 199 (240)
T cd09287 125 THVLRGKDHIDNTEKQRYIYEY--FGWEYP--ETIHWGRLK-IEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRG 199 (240)
T ss_pred CeEEechhhhhCCHHHHHHHHH--cCCCCC--cEEeeeeec-CCCCeeccccccccccccccccccCcchHHHHHHHHCC
Confidence 4456677765422 22222222 222345 444456665 578999999842 1 23333333 4
Q ss_pred hChhHHHHHHhcCCC-CCccccCHHHHHH-HHHHHH
Q 005849 604 FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTN 637 (674)
Q Consensus 604 ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~~~~~ 637 (674)
|.+++++-|+..... ..+..++++.|.. +++.++
T Consensus 200 ~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~ 235 (240)
T cd09287 200 IRPEAIRDFIIEVGVKQTDATISWENLYAINRKLID 235 (240)
T ss_pred CCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhc
Confidence 789999999888877 8888999999876 555554
No 133
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=79.52 E-value=2.5 Score=40.02 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCeeecCCCCCC
Q 005849 119 MVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 119 iaRy~r~~G~~V~~~~G~D~~ 139 (674)
+|||+|+.||+|.+..+.++.
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~ 32 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDD 32 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChH
Confidence 689999999999999877554
No 134
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=79.26 E-value=2.6 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||..+.+. .+.+.++. |+++.+..+
T Consensus 7 ~PTG~lHLG~~~~al~--~~~~lQ~a-g~~~~~~Ia 39 (280)
T cd00806 7 QPSGSLHLGHYLGAFR--FWVWLQEA-GYELFFFIA 39 (280)
T ss_pred CCCchhhHHHHHHHHH--HHHHHHhC-CCCEEEEec
Confidence 5789999999988543 23333333 888877654
No 135
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=79.19 E-value=7.2 Score=40.02 Aligned_cols=91 Identities=13% Similarity=-0.033 Sum_probs=55.7
Q ss_pred ceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC------cc---------ChhhHHh-h
Q 005849 541 TMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN------VI---------DPIDTIK-E 603 (674)
Q Consensus 541 d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN------~i---------~~~dll~-~ 603 (674)
.-.+-|.|.+-.- .+..+.-.+ .-..| .++..+++ +.+|+|+||+.+- .+ +...+.. .
T Consensus 123 ThVvRG~D~l~~t~~Q~~l~~aL--g~~~P--~~~~~~hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G 197 (238)
T cd00807 123 THSLCTLEFEDRRPSYYWLCDAL--RLYRP--HQWEFSRL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRG 197 (238)
T ss_pred CeEEechhhhcCCHHHHHHHHHc--CCCCC--ceeEEEEE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcC
Confidence 3455677766422 111222222 22345 32333444 7999999999852 12 1233322 4
Q ss_pred hChhHHHHHHhcCCC-CCccccCHHHHHH-HHHHH
Q 005849 604 FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFT 636 (674)
Q Consensus 604 ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~~~~ 636 (674)
+-+++++=|++.... ..+..|+++.|.. +++.+
T Consensus 198 ~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~i 232 (238)
T cd00807 198 VTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDL 232 (238)
T ss_pred CCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHh
Confidence 779999999998888 8999999999987 55544
No 136
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=76.23 E-value=4.5 Score=37.30 Aligned_cols=28 Identities=43% Similarity=0.859 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005849 624 LSIERLTANKAFTNKLWNAGKFILQNLP 651 (674)
Q Consensus 624 fs~~~l~~~~~~~~kl~n~~~f~~~~~~ 651 (674)
||.+.+.+..++++|+||+.+|+..+..
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~ 28 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLE 28 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6889999999999999999999876433
No 137
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=76.02 E-value=3.1 Score=49.06 Aligned_cols=59 Identities=22% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccC-CCccChhh
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~-gN~i~~~d 599 (674)
+.+|+...|.||... =+++-++-.+ ++.|-..+..|.++..++| .|||||. +|+|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 457888999999643 3444444322 2222012334566666653 6999999 68998755
No 138
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=73.75 E-value=5.3 Score=44.46 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 005849 89 SDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~ 138 (674)
++++.+..| --|||+ |||||+... -.+.++ ...|++|+++.|=-+
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~l---~~l~~l-q~~G~~~~~ligd~t 76 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVPL---MKLKRF-QDAGHRPVILIGGFT 76 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHHH---HHHHHH-HHcCCeEEEEEcccc
Confidence 345667677 578885 999995542 224444 457999888776433
No 139
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=73.62 E-value=2.7 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=25.0
Q ss_pred CCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 100 NVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 100 ~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
-||| .|||||.... ..+.|++++ |++|.+..|=
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D 41 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGD 41 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECC
Confidence 5789 8999998753 367777775 9998887653
No 140
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=73.47 E-value=5.9 Score=42.75 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=25.4
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++.+..| =-|||.+||||+.. +. .+.+++++ |++|.+..+
T Consensus 30 ~~~v~~G-~~PTG~lHLG~~~~-~~--~~~~lq~~-g~~~~i~Ia 69 (329)
T PRK08560 30 EPKAYIG-FEPSGKIHLGHLLT-MN--KLADLQKA-GFKVTVLLA 69 (329)
T ss_pred CCEEEEc-cCCCCcchhhhhHH-HH--HHHHHHHC-CCeEEEEEc
Confidence 4444455 46779999999652 22 26666663 888766544
No 141
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=64.60 E-value=14 Score=41.08 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=49.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGG 179 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~ 179 (674)
-|||.|||||..+.+-. ..+.+...|+++.+... |-|.+- ...++.++ .+...
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-----------~~~dp~~l-------------r~~~~ 62 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-----------KCDDPARI-------------QRSTL 62 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-----------CCCCHHHH-------------HHHHH
Confidence 57899999997766532 23444455888766432 333221 01122211 12223
Q ss_pred HHHHHHHHhccccCCCCccc-cCChhHHHHHHHHHHHHHHcCceEE
Q 005849 180 TITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 180 ~~~~~l~~lgi~~Dw~~~~~-T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.+..++...|+..+-..-|. +.-|++.+ ..|++..+-..|.+-+
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh~E-L~wiL~~it~~g~L~R 107 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEIPE-LTWLLTCVAGKGLLNR 107 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhHHH-HHHHHHhhhhHHHHHh
Confidence 35566777887665222222 33445443 3555555555554433
No 142
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=63.02 E-value=6.2 Score=43.46 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=27.8
Q ss_pred CEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++.+..| --||| .|||||+... -.+.++++ .|++|.++.|
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~l---~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVPL---LKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHHH---HHHHHHHH-CCCcEEEEEe
Confidence 4555566 46789 8999997742 33556655 6999888764
No 143
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=62.23 E-value=8.1 Score=43.00 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=28.0
Q ss_pred CCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+++.+..| --|||+ |||||+.. -..+.++++ .|++|+++.|
T Consensus 32 ~~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 34556666 477895 99999874 245555554 6998888764
No 144
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=61.40 E-value=17 Score=39.21 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=26.2
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.+..| =-|||.|||||..+.+. .++....|++|.+..+
T Consensus 3 ~~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 3 FRVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIA 41 (328)
T ss_pred CEEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEee
Confidence 345555 46789999999877654 2333457888877654
No 145
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=60.83 E-value=16 Score=41.77 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=42.2
Q ss_pred eCCCCccccccCCCc---------------cChhhHHh-hhChhHHHHHHhcCCC-CCccccCHHHHHH-HHHHHH
Q 005849 580 RDSQGRKMSKTLGNV---------------IDPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTN 637 (674)
Q Consensus 580 ~d~~G~KMSKS~gN~---------------i~~~dll~-~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~~~~~ 637 (674)
++.+|.||||+++.. .++..+.+ .|-++|+|=|++.... ..+...++..+.+ ++.++.
T Consensus 235 ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~ 310 (522)
T TIGR00440 235 LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLN 310 (522)
T ss_pred ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhh
Confidence 678999999999764 25667665 4899999999998877 4554556666665 444443
No 146
>PLN02886 aminoacyl-tRNA ligase
Probab=60.59 E-value=11 Score=41.61 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=19.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
-|+|.+||||..+.+ .-+..++. |+++.+.
T Consensus 54 qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~ 83 (389)
T PLN02886 54 QPTGSIHLGNYLGAI--KNWVALQE--TYDTFFC 83 (389)
T ss_pred CCCCccHHHHHHHHH--HHHHHHhc--cCCEEEE
Confidence 567999999977665 23334443 7776543
No 147
>PLN02886 aminoacyl-tRNA ligase
Probab=58.94 E-value=12 Score=41.22 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhccccC
Q 005849 177 YGGTITSQIKRLGASCD 193 (674)
Q Consensus 177 ~~~~~~~~l~~lgi~~D 193 (674)
+...+..++..+|+..+
T Consensus 102 ~~~~~~a~~lA~GlDP~ 118 (389)
T PLN02886 102 ATRSTAAIYLACGIDPS 118 (389)
T ss_pred HHHHHHHHHHHcCcCcc
Confidence 33445667888898766
No 148
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=57.58 E-value=11 Score=42.72 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=38.6
Q ss_pred eeEeeeeEeCCCCccccccCCCccChhhHH-hhhChhHHHHHHhcCCC----CCccccCHHHHH
Q 005849 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTI-KEFGADALRFTISLGTA----GQDLSLSIERLT 630 (674)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~gN~i~~~dll-~~ygaD~lR~~l~~~~~----~~d~~fs~~~l~ 630 (674)
.+.-++++++.+|+|||||++ .+...+.. ..|-+.+++-+++.... ...-.|+.+.+.
T Consensus 236 ~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~ 298 (472)
T COG0008 236 VYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGI 298 (472)
T ss_pred cEEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 566678999888899999999 67666543 45777777777654332 334445554443
No 149
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=57.54 E-value=35 Score=39.73 Aligned_cols=67 Identities=13% Similarity=-0.031 Sum_probs=48.0
Q ss_pred eeEeeeeEeCCCCccccccCCCcc---------------ChhhHH-hhhChhHHHHHHhcCCC-CCccccCHHHHHH-HH
Q 005849 572 HVYLHGLIRDSQGRKMSKTLGNVI---------------DPIDTI-KEFGADALRFTISLGTA-GQDLSLSIERLTA-NK 633 (674)
Q Consensus 572 ~v~~hg~v~d~~G~KMSKS~gN~i---------------~~~dll-~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~ 633 (674)
.++-.+ .++.+|.||||+++.-. ++.-+. ..|.++++|=|+..... ..+..|+++.|.. ++
T Consensus 275 ~~~h~~-rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 275 IVEDFS-RLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred eEEEEe-eEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 333345 57899999999987421 111111 25889999999999888 8899999999987 66
Q ss_pred HHHHHH
Q 005849 634 AFTNKL 639 (674)
Q Consensus 634 ~~~~kl 639 (674)
+.++..
T Consensus 354 ~~l~~~ 359 (601)
T PTZ00402 354 QILDPS 359 (601)
T ss_pred HHHhhc
Confidence 666554
No 150
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=55.78 E-value=6.4 Score=41.58 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=28.0
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.+..| =-|||.|||||+.... .+.++++ .|++|.+..|
T Consensus 3 ~~~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp HSSEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEE
T ss_pred CCCcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cCCccceEec
Confidence 345666666 4688999999887653 3444444 8999888764
No 151
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=54.59 E-value=19 Score=31.28 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 627 ERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 627 ~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+.+.+..++++++|++++++.....+..+..+.+.+...|.|+++
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 46 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLA 46 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHH
Confidence 467778899999999999977655443221111123455677664
No 152
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=51.70 E-value=16 Score=42.12 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=48.9
Q ss_pred eCCCCccccccCCCc---------------cChhhHHh-hhChhHHHHHHhcCCC-CCccccCHHHHHH-HHHHHHHHHH
Q 005849 580 RDSQGRKMSKTLGNV---------------IDPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTNKLWN 641 (674)
Q Consensus 580 ~d~~G~KMSKS~gN~---------------i~~~dll~-~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~-~~~~~~kl~n 641 (674)
++.+|.||||++... .+...+.+ .|-++++|=|++.... ..+..++++.|.. +++.++....
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~ 359 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDERCE 359 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHHHhcccCc
Confidence 578999999999774 24445544 3889999999999888 8899999999987 6666665543
No 153
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=51.50 E-value=14 Score=35.06 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.7
Q ss_pred hhChhHHHHHHhcCCCCCccccCHHHHHH
Q 005849 603 EFGADALRFTISLGTAGQDLSLSIERLTA 631 (674)
Q Consensus 603 ~ygaD~lR~~l~~~~~~~d~~fs~~~l~~ 631 (674)
+.|.|++||.+++.++.++++|+++.+..
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~ 30 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLS 30 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHh
Confidence 46789999999999999999999998654
No 154
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.25 E-value=13 Score=40.56 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCcceeEEeehhhhhHHHHHHHHhhhhcC-CCCcceeEeeeeEeCCCCccccccCCCccChhhHH-----------hhhC
Q 005849 538 YPTTMLETGHDILFFWVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI-----------KEFG 605 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~~~~~~~~~~~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll-----------~~yg 605 (674)
+.+.+.++|.||.-.--+-.=++.-.+.. ..+| =++--++.+..|.|+=||-||+||.+--. ..-.
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp~~tspy~lYQfF~~~pD 303 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDPSKTSPYHLYQFFASLPD 303 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEecCccCCcHHHHHHHHhCch
Confidence 45778899999975322211111111211 1232 24456677899999999999999975321 1234
Q ss_pred hhHHHHHHhc
Q 005849 606 ADALRFTISL 615 (674)
Q Consensus 606 aD~lR~~l~~ 615 (674)
.|+-||..+.
T Consensus 304 d~v~k~Lklf 313 (467)
T KOG2623|consen 304 DDVEKFLKLF 313 (467)
T ss_pred hHHHHHHHHH
Confidence 6677765443
No 155
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=51.16 E-value=11 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
-|||.|||||..+.+.. +.+++. +++|.+..
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~I 39 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCI 39 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEE
Confidence 57799999998876532 445554 36776655
No 156
>PLN02859 glutamine-tRNA ligase
Probab=49.56 E-value=34 Score=40.98 Aligned_cols=64 Identities=16% Similarity=-0.019 Sum_probs=46.1
Q ss_pred eeeeEeCCCCccccccCCCc---------------cChhhHHh-hhChhHHHHHHhcCCC-CCcc-ccCHHHHHH-HHHH
Q 005849 575 LHGLIRDSQGRKMSKTLGNV---------------IDPIDTIK-EFGADALRFTISLGTA-GQDL-SLSIERLTA-NKAF 635 (674)
Q Consensus 575 ~hg~v~d~~G~KMSKS~gN~---------------i~~~dll~-~ygaD~lR~~l~~~~~-~~d~-~fs~~~l~~-~~~~ 635 (674)
.|=-.++.+|.||||+++.. .++..+.+ .|-++++|=|++.... ..+. .|+++.|+. +++.
T Consensus 488 ~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~ 567 (788)
T PLN02859 488 WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREE 567 (788)
T ss_pred EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHh
Confidence 33337789999999999764 24445544 4889999999998887 5565 799998855 4444
Q ss_pred HHH
Q 005849 636 TNK 638 (674)
Q Consensus 636 ~~k 638 (674)
+++
T Consensus 568 l~~ 570 (788)
T PLN02859 568 LNK 570 (788)
T ss_pred hCC
Confidence 443
No 157
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=49.45 E-value=34 Score=36.45 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=41.2
Q ss_pred ceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC
Q 005849 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (674)
Q Consensus 541 d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~ 617 (674)
.-.+-|.|.+-.-..... +--++.-..| .+..++++++.+|+||||+.|.. .+.+ +.+.++ +..++....
T Consensus 194 ThVvRG~D~l~~t~~Q~~-l~~aLg~~~P--~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~lG 263 (299)
T PRK05710 194 THVVRGADLLDSTPRQIY-LQQLLGLPTP--RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRFLG 263 (299)
T ss_pred CEEEeChhhhhcCHHHHH-HHHHcCCCCC--eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHHcC
Confidence 445667776643222221 1112222345 55556789999999999998653 4555 567777 555555443
No 158
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=47.48 E-value=24 Score=30.95 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Q 005849 624 LSIERLTANKAFTNKLWNAGKFIL 647 (674)
Q Consensus 624 fs~~~l~~~~~~~~kl~n~~~f~~ 647 (674)
|+.+.+.+.+++++|+||++.+..
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~ 24 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELA 24 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999987643
No 159
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=46.50 E-value=35 Score=37.77 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeec
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWL 133 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r-~~G~~V~~~ 133 (674)
-|+|.+||||..+.+ . .|.. ..|+++.+.
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~~~~~~~ 39 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHEYECFFF 39 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcCCcEEEE
Confidence 577999999988843 2 4444 357776543
No 160
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.28 E-value=1e+02 Score=33.13 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=28.1
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCC-CeeecCCCCCCC
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGR-PTLWLPGTDHAG 140 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~-~V~~~~G~D~~G 140 (674)
++.|.+| =-|+|.|||||..+.+. .+++...++ ++.+.. .|.|.
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I-aDlha 49 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI-ADLHA 49 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHHH----HHHHHhcccCceEEEE-ecHHH
Confidence 4555555 47889999999987654 455556664 665533 34443
No 161
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=42.66 E-value=62 Score=31.18 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCeeecC
Q 005849 118 IMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 118 iiaRy~r~~G~~V~~~~ 134 (674)
-+||++|+.||+|.+..
T Consensus 17 ~LARwLRllGydt~~~~ 33 (165)
T COG1656 17 KLARWLRLLGYDTVYSS 33 (165)
T ss_pred HHHHHHHHcCCceeeec
Confidence 37999999999999986
No 162
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=42.04 E-value=23 Score=38.28 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=19.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~ 133 (674)
-|||.|||||..+.+.. ..+.+...|.++.+.
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~ 42 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF 42 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE
Confidence 56799999997765432 223344456556554
No 163
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=23 Score=39.24 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=26.3
Q ss_pred CEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+..+..| --||| .|||||+..... + |-....|++|..+.|
T Consensus 32 ~~~~Y~G-fDPTa~slHlGhlv~l~k---L-~~fQ~aGh~~ivLig 72 (401)
T COG0162 32 PLRVYIG-FDPTAPSLHLGHLVPLMK---L-RRFQDAGHKPIVLIG 72 (401)
T ss_pred CceEEEe-eCCCCCccchhhHHHHHH---H-HHHHHCCCeEEEEec
Confidence 3444444 34678 799999876422 3 334567999999876
No 164
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=40.82 E-value=25 Score=38.81 Aligned_cols=42 Identities=7% Similarity=0.054 Sum_probs=24.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+++.+..| --|||.|||||.. +-.--+..++ -.|++|.+..+
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g~--i~~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQGI--LKAINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCCEEEEE-ECCCCcccccchH--hHhHHHHHHH-hCCCeEEEEEc
Confidence 34455555 4678999999932 1111222333 34888877654
No 165
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=37.03 E-value=1.1e+02 Score=31.47 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=52.6
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
...-++++|.+++.+-.. -+... .+..+.+|-+|+...|-...+.. ..++ .++ -.|+.|++.
T Consensus 29 ~f~~i~~~G~l~~~~~~~-~~~~~-~~~~~~~~~kvl~sigg~~~~~~-----~~~~----~~~--~~r~~fi~~----- 90 (253)
T cd06545 29 AFANPDANGTLNANPVRS-ELNSV-VNAAHAHNVKILISLAGGSPPEF-----TAAL----NDP--AKRKALVDK----- 90 (253)
T ss_pred EEEEECCCCeEEecCcHH-HHHHH-HHHHHhCCCEEEEEEcCCCCCcc-----hhhh----cCH--HHHHHHHHH-----
Confidence 333467788888764221 12222 33444578888776553322211 0011 011 113344433
Q ss_pred HHHHHHHHHHHHHh---ccccCCCCccccCChhHHHHHHHHHHHHHHcCce
Q 005849 175 EKYGGTITSQIKRL---GASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLI 222 (674)
Q Consensus 175 ~~~~~~~~~~l~~l---gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGli 222 (674)
+.+.+++. ||.+||+..... ..+|..+++++-..|.+.|++
T Consensus 91 ------lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 91 ------IINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred ------HHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 33334444 788999875333 356777877777777666653
No 166
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=30.07 E-value=53 Score=34.51 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=42.6
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA- 618 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~- 618 (674)
..-.+-|.|.+..-..... +--++.-..| .+.-++++++.+|+|+||++|-. .+++. -.+.++..++.....
T Consensus 186 IThViRG~D~l~~t~~q~~-l~~aLg~~~P--~y~H~pll~~~~g~kLSKR~~~~-~i~~~---~~~~~~~~~l~~lG~~ 258 (272)
T TIGR03838 186 ITHVVRGADLLDSTPRQIY-LQRLLGLPPP--RYLHLPLVVNADGEKLSKQNGAP-ALDLS---HPLPALLAALRFLGLP 258 (272)
T ss_pred CCEEEeCHhhhhccHHHHH-HHHHhCCCCC--eEEechhhhCCCCCeeeccCCcc-chhcC---CcHHHHHHHHHHcCCC
Confidence 3455667776653322221 1122222445 45555788899999999998653 33332 123445555444332
Q ss_pred --CCccccCHHH
Q 005849 619 --GQDLSLSIER 628 (674)
Q Consensus 619 --~~d~~fs~~~ 628 (674)
...-.||.+.
T Consensus 259 ~~~~~~~~~~~~ 270 (272)
T TIGR03838 259 PPPELAAASPAE 270 (272)
T ss_pred CCcccccCCHHH
Confidence 2333555544
No 167
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.66 E-value=43 Score=35.15 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.8
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTL 115 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~ 115 (674)
+++|++.++-=--++.+|+||+-..++
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFif 109 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIF 109 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHH
Confidence 678999988655678899999987654
No 168
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=27.85 E-value=88 Score=33.55 Aligned_cols=75 Identities=19% Similarity=0.048 Sum_probs=41.2
Q ss_pred cceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCcc-ChhhHHh-hhChhHHHHHHhcC
Q 005849 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI-DPIDTIK-EFGADALRFTISLG 616 (674)
Q Consensus 540 ~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i-~~~dll~-~ygaD~lR~~l~~~ 616 (674)
..-.+-|.|.+.. ..+..+.-.+ .-..| ....+..+++.+|+|+||+.+..- ...++.+ .+.++++-=+|...
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~~L--g~~~P--~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYEAL--GWPPP--PYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHHHC--TSSS---EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred cCeEEEccccccccHHHHHHHHHh--CCCCc--ceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 4566778887753 2333332222 22224 444557788999999999997653 2333322 24566565566554
Q ss_pred CC
Q 005849 617 TA 618 (674)
Q Consensus 617 ~~ 618 (674)
..
T Consensus 276 G~ 277 (314)
T PF00749_consen 276 GW 277 (314)
T ss_dssp TB
T ss_pred cC
Confidence 43
No 169
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=27.58 E-value=60 Score=38.57 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=22.9
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHH-HHcCCCeeec
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH-RMKGRPTLWL 133 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~-r~~G~~V~~~ 133 (674)
++.+..| --|||.|||||. +++ .+..+. ...|++|.+.
T Consensus 32 ~~rv~sG-i~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~l 70 (682)
T PTZ00348 32 LIRCYDG-FEPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFW 70 (682)
T ss_pred CCEEEEe-eCCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEE
Confidence 4556666 478899999993 222 222222 2468887664
No 170
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=43 Score=35.17 Aligned_cols=52 Identities=13% Similarity=0.005 Sum_probs=32.9
Q ss_pred CCcceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCC-CccccccCCC
Q 005849 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGN 593 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-G~KMSKS~gN 593 (674)
.-+|+.+.|.||=.- -+++.-.-.+ ..+.| -+++|.|+-.+. |+|||+|--+
T Consensus 176 L~vD~qfgGvDQRKIf~~A~eylp~l--~ykKr--ihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 176 LEVDAQFGGVDQRKIFVLAEEYLPDL--GYKKR--IHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HhhhHHhcCccHHHHHHHHHHhhhhh--Ccccc--eeecCCCCccccccCccccCCcc
Confidence 457999999998542 2333222222 22323 467788876666 9999999765
No 171
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.36 E-value=3.1e+02 Score=26.71 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=25.4
Q ss_pred HHHHHHHHHHh---ccccCCCCccccC---ChhHHHHHHHHHHHHHHcCc
Q 005849 178 GGTITSQIKRL---GASCDWTRERFTL---DEQLSRAVVEAFIRLHEKGL 221 (674)
Q Consensus 178 ~~~~~~~l~~l---gi~~Dw~~~~~T~---~~~~~~~v~~~f~~L~~kGl 221 (674)
.+.+.+.+++. ||.+||+.+.... ...+..+++++=.+|.++|+
T Consensus 93 ~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 93 ANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCc
Confidence 33444444545 7889998764433 24566666666666655444
No 172
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=26.17 E-value=35 Score=36.94 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=12.6
Q ss_pred CCCCCCCchhhHHHHH
Q 005849 100 NVTGSLHMGHAMFVTL 115 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~ 115 (674)
-|+|.+||||..+.+.
T Consensus 10 ~PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 10 RPTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCCcchHHHHHHHHH
Confidence 4579999999887544
No 173
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=22.36 E-value=53 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
...|..+..+|-|.....-. -...|.|||.+|-
T Consensus 60 ~~~I~~~IreGRL~~~~~~n-l~~~CE~CG~~I~ 92 (137)
T TIGR03826 60 EKLILKFIREGRLQLKHFPN-LGYPCERCGTSIR 92 (137)
T ss_pred HHHHHHHHHcCCeeccCCCC-CcCcccccCCcCC
Confidence 45666667777666544323 3355999999874
No 174
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=22.27 E-value=1.1e+02 Score=27.19 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceE
Q 005849 183 SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223 (674)
Q Consensus 183 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy 223 (674)
+..+.|||.+|-.|. |.+++..+...+-++.|.+++.++
T Consensus 74 ~~AR~LGI~VD~RRr--~~~~en~eal~k~ik~ll~~~~~~ 112 (113)
T COG4352 74 RKARTLGIAVDHRRR--NRNPENFEALVKRIKELLEKIIVF 112 (113)
T ss_pred HHHHhhCcceehhhc--cCCHHHHHHHHHHHHHHHhcCccC
Confidence 456899999996654 777777666777778888877654
No 175
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=21.06 E-value=1.7e+02 Score=25.48 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH
Q 005849 624 LSIERLTANKAFTNKLWNAGKF 645 (674)
Q Consensus 624 fs~~~l~~~~~~~~kl~n~~~f 645 (674)
|+.+.+++..++++|+|+++..
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~ 22 (117)
T cd07959 1 FREEEANSAILRLERFYELAEE 22 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888887765
No 176
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=20.68 E-value=3.2e+02 Score=29.78 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHh---ccccCCCCccccC---ChhHHHHHHHHHHHHHHcCceEEcccceeccCCC
Q 005849 177 YGGTITSQIKRL---GASCDWTRERFTL---DEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (674)
Q Consensus 177 ~~~~~~~~l~~l---gi~~Dw~~~~~T~---~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~ 235 (674)
+++.+.+.+++. ||.+||+.+.... -.+|..+++++=.+|.+.|.-+.-.-.+.|+|.+
T Consensus 100 fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p~~ 164 (358)
T cd02875 100 WIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFDVAWSPSC 164 (358)
T ss_pred HHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 344445555555 8899999764311 2456677777777777765444444455676653
No 177
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=20.06 E-value=3.4e+02 Score=29.32 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHh---ccccCCCCccc-----cCChhHHHHHHHHHHHHHHc
Q 005849 177 YGGTITSQIKRL---GASCDWTRERF-----TLDEQLSRAVVEAFIRLHEK 219 (674)
Q Consensus 177 ~~~~~~~~l~~l---gi~~Dw~~~~~-----T~~~~~~~~v~~~f~~L~~k 219 (674)
+++.+.+.+++. ||.+||+.+-. ....+|..+++++-.+|.+.
T Consensus 100 fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~ 150 (362)
T cd02872 100 FIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555 88899987532 11234777777777777776
No 178
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.03 E-value=2.1e+02 Score=25.77 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=40.6
Q ss_pred HHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHc-CceEEcccceecc
Q 005849 182 TSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK-GLIYQGSYMVNWS 232 (674)
Q Consensus 182 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k-Gliy~~~~~v~w~ 232 (674)
...++.||.++.|...--|.-....+.+..++..+.+. |+.|-|....-|.
T Consensus 23 l~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~ 74 (119)
T COG3171 23 LGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWE 74 (119)
T ss_pred HHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeee
Confidence 45689999999987666677777788888888888875 9999998776663
Done!