Query 005849
Match_columns 674
No_of_seqs 219 out of 1951
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 3E-144 1E-148 1275.3 49.3 604 59-671 3-612 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 4E-134 1E-138 1198.9 37.0 602 55-671 10-683 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 5E-132 2E-136 1176.2 39.4 603 61-671 6-682 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-115 3E-120 1050.1 34.6 573 61-649 2-714 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 2E-111 6E-116 993.1 47.1 532 58-671 20-723 (880)
6 1wkb_A Leucyl-tRNA synthetase; 100.0 9E-110 3E-114 986.8 44.0 572 61-649 2-714 (810)
7 2v0c_A Aminoacyl-tRNA syntheta 100.0 6E-109 2E-113 978.7 45.3 532 62-671 3-723 (878)
8 3u1f_A Methionyl-tRNA syntheta 100.0 1.3E-73 4.3E-78 650.2 25.2 389 87-671 6-412 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 3.8E-73 1.3E-77 662.1 25.5 381 90-645 2-406 (722)
10 2x1l_A Methionyl-tRNA syntheta 100.0 3.8E-69 1.3E-73 610.8 22.7 360 87-647 9-374 (524)
11 3kfl_A Methionyl-tRNA syntheta 100.0 6E-69 2.1E-73 612.5 22.7 393 79-671 15-428 (564)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.5E-68 1.9E-72 602.3 26.7 375 89-671 24-411 (536)
13 3h99_A Methionyl-tRNA syntheta 100.0 1.4E-68 4.9E-73 610.1 18.3 379 86-647 14-410 (560)
14 2d5b_A Methionyl-tRNA syntheta 100.0 1.7E-67 5.8E-72 594.2 26.3 351 90-646 3-360 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 3.3E-65 1.1E-69 575.0 20.6 349 89-647 4-359 (497)
16 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.2E-44 4.2E-49 397.9 21.7 325 91-667 25-366 (462)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.7E-43 5.8E-48 390.4 17.1 303 90-645 43-363 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.5E-40 8.4E-45 363.2 22.6 106 539-645 244-351 (414)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 9E-39 3.1E-43 354.6 18.7 299 90-646 23-326 (461)
20 1wka_A Valyl-tRNA synthetase; 100.0 2.4E-35 8.2E-40 277.3 16.5 140 250-393 3-146 (147)
21 1wny_A Isoleucyl-tRNA syntheta 100.0 3.2E-33 1.1E-37 273.5 13.8 145 250-396 2-186 (186)
22 2ajg_A Leucyl-tRNA synthetase; 100.0 6E-30 2E-34 252.4 15.3 139 250-389 9-194 (196)
23 3o0a_A Leucyl-tRNA synthetase 100.0 1.1E-28 3.9E-33 246.4 14.6 140 253-393 5-217 (219)
24 2wfg_A Cytosolic leucyl-tRNA s 99.9 1.4E-27 4.7E-32 244.9 11.3 135 263-397 31-256 (261)
25 3fnr_A Arginyl-tRNA synthetase 99.9 2.3E-26 7.8E-31 254.1 19.8 153 71-229 12-195 (464)
26 1irx_A Lysyl-tRNA synthetase; 99.9 1.1E-27 3.8E-32 270.4 5.3 127 90-224 20-152 (523)
27 2wfd_A Leucyl-tRNA synthetase, 99.9 1.1E-25 3.6E-30 230.1 13.7 126 263-390 28-250 (252)
28 2zue_A Arginyl-tRNA synthetase 99.9 2.6E-25 8.8E-30 255.0 14.8 146 76-224 105-294 (629)
29 3pz6_A Leurs, leucyl-tRNA synt 99.9 3.4E-25 1.2E-29 226.6 8.8 156 232-391 47-305 (311)
30 1iq0_A Arginyl-tRNA synthetase 99.9 3.2E-24 1.1E-28 245.1 14.5 130 91-224 104-264 (592)
31 1f7u_A Arginyl-tRNA synthetase 99.8 4.4E-19 1.5E-23 202.1 18.2 148 76-229 129-322 (607)
32 3aii_A Glutamyl-tRNA synthetas 99.4 7.8E-13 2.7E-17 147.0 16.5 94 93-224 97-190 (553)
33 2o5r_A Glutamyl-tRNA synthetas 99.3 1.3E-10 4.6E-15 128.8 20.3 100 90-225 11-117 (481)
34 2cfo_A Glutamyl-tRNA synthetas 99.3 5.6E-11 1.9E-15 131.9 17.1 93 95-224 4-96 (492)
35 1qtq_A GLNRS, protein (glutami 99.2 2.9E-10 9.8E-15 126.5 20.7 95 93-224 27-121 (553)
36 2hz7_A Glutaminyl-tRNA synthet 99.2 7.4E-10 2.5E-14 128.4 21.4 95 93-224 67-161 (851)
37 1j09_A Glutamyl-tRNA synthetas 99.0 2.4E-09 8.1E-14 118.2 16.5 96 94-225 3-105 (468)
38 3al0_C Glutamyl-tRNA(Gln) amid 99.0 6.1E-09 2.1E-13 118.0 19.5 97 90-225 128-233 (592)
39 2ja2_A Glutamyl-tRNA synthetas 99.0 8.2E-09 2.8E-13 114.4 19.4 95 93-225 7-110 (498)
40 3afh_A Glutamyl-tRNA synthetas 98.9 1.9E-08 6.5E-13 111.5 18.7 95 93-225 26-129 (488)
41 4g6z_A Glutamate-tRNA ligase; 98.9 4.7E-08 1.6E-12 107.9 19.4 95 94-225 27-121 (490)
42 4gri_A Glutamate--tRNA ligase; 98.5 7.9E-06 2.7E-10 91.4 21.0 98 94-225 26-128 (512)
43 1nzj_A Hypothetical protein YA 98.4 2.4E-07 8.2E-12 96.5 5.2 94 94-225 7-101 (298)
44 2cyb_A Tyrosyl-tRNA synthetase 97.4 0.00028 9.7E-09 74.3 7.8 73 537-617 168-240 (323)
45 2yxn_A Tyrosyl-tRNA synthetase 96.2 0.0041 1.4E-07 65.3 5.4 72 538-615 190-262 (322)
46 1jil_A Tyrrs, tyrosyl-tRNA syn 96.0 0.0069 2.4E-07 65.8 6.3 75 538-616 185-272 (420)
47 2ts1_A Tyrosyl-tRNA synthetase 95.9 0.0066 2.3E-07 65.8 5.8 76 538-616 184-271 (419)
48 2jan_A Tyrosyl-tRNA synthetase 95.8 0.0088 3E-07 65.0 5.8 75 538-616 186-273 (432)
49 1h3f_A Tyrosyl-tRNA synthetase 95.8 0.014 4.7E-07 63.6 7.3 57 539-599 187-245 (432)
50 2pid_A Tyrosyl-tRNA synthetase 95.7 0.0057 2E-07 65.0 4.2 58 538-599 209-267 (356)
51 2g36_A Tryptophanyl-tRNA synth 95.7 0.013 4.4E-07 61.9 6.7 61 538-599 152-218 (340)
52 3tzl_A Tryptophanyl-tRNA synth 95.6 0.0095 3.3E-07 62.4 5.1 61 538-599 138-205 (322)
53 1y42_X Tyrosyl-tRNA synthetase 95.5 0.0092 3.1E-07 64.2 4.8 60 538-599 231-306 (392)
54 1n3l_A Tyrosyl-tRNA synthetase 95.2 0.018 6E-07 61.7 5.7 58 538-599 177-236 (372)
55 2dlc_X Tyrosyl-tRNA synthetase 94.8 0.025 8.5E-07 61.0 5.4 58 538-599 181-241 (394)
56 1yi8_B Tryptophanyl-tRNA synth 93.9 0.041 1.4E-06 58.3 4.7 62 538-600 161-229 (351)
57 2zp1_A Tyrosyl-tRNA synthetase 93.9 0.047 1.6E-06 57.0 5.0 55 539-600 163-218 (314)
58 2el7_A Tryptophanyl-tRNA synth 93.7 0.044 1.5E-06 57.7 4.5 60 538-599 140-208 (337)
59 3i05_A Tryptophanyl-tRNA synth 93.7 0.041 1.4E-06 59.2 4.2 56 540-599 225-283 (395)
60 2cya_A Tyrosyl-tRNA synthetase 93.3 0.066 2.3E-06 57.0 5.1 58 538-599 176-252 (364)
61 4arc_A Leucine--tRNA ligase; l 93.2 0.059 2E-06 63.8 4.8 79 372-452 154-246 (880)
62 2ip1_A Tryptophanyl-tRNA synth 93.2 0.068 2.3E-06 58.2 4.9 58 538-599 248-309 (432)
63 3jxe_A Tryptophanyl-tRNA synth 93.1 0.078 2.7E-06 56.9 5.1 55 540-598 208-266 (392)
64 3vgj_A Tyrosyl-tRNA synthetase 92.6 0.094 3.2E-06 56.0 5.0 57 538-598 199-260 (373)
65 3tze_A Tryptophanyl-tRNA synth 92.6 0.099 3.4E-06 56.3 5.1 57 539-599 243-303 (406)
66 3hzr_A Tryptophanyl-tRNA synth 92.1 0.16 5.3E-06 54.4 5.8 56 540-599 225-283 (386)
67 1i6k_A TRPRS, tryptophanyl-tRN 91.9 0.11 3.8E-06 54.4 4.5 61 538-599 136-208 (328)
68 3hv0_A Tryptophanyl-tRNA synth 91.7 0.12 4E-06 55.6 4.3 55 541-599 222-280 (393)
69 2j5b_A Tyrosyl-tRNA synthetase 91.6 0.1 3.4E-06 55.2 3.8 57 539-599 186-246 (348)
70 1r6u_A Tryptophanyl-tRNA synth 91.6 0.13 4.5E-06 55.9 4.7 58 538-599 255-316 (437)
71 2yy5_A Tryptophanyl-tRNA synth 91.5 0.12 4E-06 54.7 4.0 60 538-599 146-218 (348)
72 1r6t_A Tryptophanyl-tRNA synth 90.7 0.18 6.1E-06 55.5 4.7 59 538-600 302-364 (477)
73 2cyc_A Tyrosyl-tRNA synthetase 90.2 0.22 7.4E-06 53.2 4.7 58 538-599 179-265 (375)
74 2v0c_A Aminoacyl-tRNA syntheta 90.2 0.26 8.8E-06 58.5 5.7 77 372-451 134-225 (878)
75 3tzl_A Tryptophanyl-tRNA synth 89.1 0.13 4.3E-06 53.9 1.8 36 100-140 11-46 (322)
76 3p0j_A Tyrosyl-tRNA synthetase 87.9 0.29 1E-05 56.2 3.9 57 538-598 182-243 (690)
77 1nzj_A Hypothetical protein YA 87.6 0.47 1.6E-05 49.0 4.8 57 540-600 185-241 (298)
78 3n9i_A Tryptophanyl-tRNA synth 86.4 0.47 1.6E-05 49.9 4.1 60 538-599 151-223 (346)
79 3foc_A Tryptophanyl-tRNA synth 85.3 0.41 1.4E-05 52.1 3.1 52 542-597 290-345 (451)
80 3sz3_A Tryptophanyl-tRNA synth 85.1 0.24 8.2E-06 52.1 1.1 62 538-599 142-217 (341)
81 2cyb_A Tyrosyl-tRNA synthetase 84.6 1.2 4E-05 46.5 6.1 39 92-135 33-71 (323)
82 2dlc_X Tyrosyl-tRNA synthetase 82.5 1.4 4.7E-05 47.3 5.7 32 100-135 47-78 (394)
83 2cya_A Tyrosyl-tRNA synthetase 82.3 0.48 1.6E-05 50.3 2.0 32 100-135 43-74 (364)
84 3a04_A Tryptophanyl-tRNA synth 81.7 1.4 5E-05 46.7 5.5 58 540-597 209-268 (372)
85 3jxe_A Tryptophanyl-tRNA synth 80.7 0.75 2.6E-05 49.2 2.9 46 89-139 71-116 (392)
86 1n3l_A Tyrosyl-tRNA synthetase 80.3 2 7E-05 45.6 6.1 31 101-135 44-74 (372)
87 3prh_A Tryptophanyl-tRNA synth 80.0 1.1 3.9E-05 47.8 3.9 62 538-599 170-242 (388)
88 2el7_A Tryptophanyl-tRNA synth 78.3 1.4 4.6E-05 46.3 3.8 32 101-135 10-42 (337)
89 3hzr_A Tryptophanyl-tRNA synth 76.9 2.2 7.6E-05 45.5 5.1 43 89-135 80-122 (386)
90 3hv0_A Tryptophanyl-tRNA synth 73.6 2.9 0.0001 44.7 5.0 43 89-135 72-115 (393)
91 3foc_A Tryptophanyl-tRNA synth 73.0 1.9 6.4E-05 46.9 3.3 43 89-135 89-132 (451)
92 3i05_A Tryptophanyl-tRNA synth 72.5 2.4 8.3E-05 45.3 4.0 44 89-136 76-120 (395)
93 3sz3_A Tryptophanyl-tRNA synth 71.8 1.2 4E-05 46.9 1.3 32 100-135 14-45 (341)
94 3p0j_A Tyrosyl-tRNA synthetase 70.4 5.1 0.00018 46.0 6.3 45 91-141 40-85 (690)
95 1yi8_B Tryptophanyl-tRNA synth 69.9 1.8 6.3E-05 45.5 2.3 32 100-135 30-61 (351)
96 1i6k_A TRPRS, tryptophanyl-tRN 69.7 1.5 5.2E-05 45.7 1.6 32 100-135 9-40 (328)
97 2ip1_A Tryptophanyl-tRNA synth 69.6 2.5 8.6E-05 45.8 3.3 43 89-135 100-143 (432)
98 1r6t_A Tryptophanyl-tRNA synth 68.8 3.2 0.00011 45.6 3.9 43 89-135 153-196 (477)
99 1r6u_A Tryptophanyl-tRNA synth 68.5 3.1 0.00011 45.1 3.8 43 89-135 106-149 (437)
100 1y42_X Tyrosyl-tRNA synthetase 67.4 3 0.0001 44.6 3.3 40 91-135 64-104 (392)
101 3a04_A Tryptophanyl-tRNA synth 67.2 2.6 8.9E-05 44.7 2.8 42 89-135 68-109 (372)
102 3tze_A Tryptophanyl-tRNA synth 65.2 5.8 0.0002 42.5 5.1 43 89-135 99-142 (406)
103 2zp1_A Tyrosyl-tRNA synthetase 65.1 2.9 9.9E-05 43.3 2.6 40 91-135 28-67 (314)
104 2ts1_A Tyrosyl-tRNA synthetase 64.2 3.4 0.00012 44.5 3.0 39 92-135 31-70 (419)
105 2g36_A Tryptophanyl-tRNA synth 63.8 3.2 0.00011 43.5 2.7 39 91-134 13-51 (340)
106 3n9i_A Tryptophanyl-tRNA synth 63.5 2 6.7E-05 45.2 0.9 31 100-135 23-54 (346)
107 2jan_A Tyrosyl-tRNA synthetase 63.1 3.6 0.00012 44.5 3.0 39 92-135 33-72 (432)
108 2yxn_A Tyrosyl-tRNA synthetase 62.4 3.5 0.00012 42.8 2.6 38 93-135 35-73 (322)
109 1jil_A Tyrrs, tyrosyl-tRNA syn 62.2 3.5 0.00012 44.5 2.6 40 91-135 32-72 (420)
110 2pid_A Tyrosyl-tRNA synthetase 61.4 3.3 0.00011 43.7 2.2 39 92-135 47-86 (356)
111 2yy5_A Tryptophanyl-tRNA synth 58.9 2.7 9.2E-05 44.2 1.0 32 100-135 12-43 (348)
112 3vgj_A Tyrosyl-tRNA synthetase 55.6 5.6 0.00019 42.2 2.8 43 92-140 57-100 (373)
113 2cyc_A Tyrosyl-tRNA synthetase 55.4 6 0.0002 42.0 3.0 73 100-193 41-114 (375)
114 1h3f_A Tyrosyl-tRNA synthetase 54.9 5.3 0.00018 43.2 2.5 41 90-135 36-77 (432)
115 2j5b_A Tyrosyl-tRNA synthetase 54.7 6.4 0.00022 41.3 3.0 42 90-135 39-80 (348)
116 3prh_A Tryptophanyl-tRNA synth 48.0 4.7 0.00016 43.0 0.7 40 94-139 38-77 (388)
117 3kp1_E D-ornithine aminomutase 35.8 11 0.00038 32.9 1.0 76 156-245 12-100 (121)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3.1e-144 Score=1275.28 Aligned_cols=604 Identities=48% Similarity=0.869 Sum_probs=563.8
Q ss_pred CCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
.++.||+ ++|++||++|++ ++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence 5688999 899999999999 99999876678899999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (674)
|||+|+|.++++.+.++|++++++++++|++.||+|++++.+.|++||++||+++||+|+|+|+|++|.++++++|.+|+
T Consensus 82 ~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 161 (862)
T 1gax_A 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY 161 (862)
T ss_dssp CCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccC
Q 005849 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (674)
Q Consensus 218 ~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G 297 (674)
++|+||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+. .+++|||||||||+||+||+|||++++|++|+|
T Consensus 162 ~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G 240 (862)
T 1gax_A 162 HEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240 (862)
T ss_dssp TTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCTT
T ss_pred HCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHcC
Confidence 9999999999999999999999999999999999999999999875 799999999999999999999999999999999
Q ss_pred cEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccc--cccCCCCHHHHHH
Q 005849 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEARK 375 (674)
Q Consensus 298 ~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~--g~~~g~~~~~ar~ 375 (674)
+++.+|++ ++.+||++++||++++|||+||+|||||++||+++++||||+++++|++|+++++| |.|.|+++++||+
T Consensus 241 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~ 319 (862)
T 1gax_A 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARR 319 (862)
T ss_dssp CCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHH
T ss_pred CEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHH
Confidence 99999995 89999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCC
Q 005849 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 455 (674)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~D 455 (674)
.|+++|+++|++++.+++.|++|+|||||++|++++++|||++++++++++++++++++++|+|++.++++.+||++++|
T Consensus 320 ~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~D 399 (862)
T 1gax_A 320 KAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD 399 (862)
T ss_dssp HHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ceeecccCCCcccceeeecCCcccEEEeCChhHHHHH--HhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhh
Q 005849 456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 533 (674)
Q Consensus 456 W~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~ 533 (674)
|||||||+||+|||+|+|++ ++...+.. .+++... ....||. ..+.|++|||||||||++||+++++||.+. ++
T Consensus 400 W~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~~ 475 (862)
T 1gax_A 400 WNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-ED 475 (862)
T ss_dssp CCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-HH
T ss_pred eeEecccCCCcccCceecCC-CCEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-HH
Confidence 99999999999999999975 33433332 2111100 0112332 368999999999999999999999999765 78
Q ss_pred hhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHH
Q 005849 534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI 613 (674)
Q Consensus 534 f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l 613 (674)
|++|||+|++++|+||+|+|+++|+++++.+.|+.||+++++||+++|.+|+|||||+||+|+|.|++++||+|++||||
T Consensus 476 ~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~l 555 (862)
T 1gax_A 476 LKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFAL 555 (862)
T ss_dssp HHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHH
T ss_pred HHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 614 SLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 614 ~~~-~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
++. ++++|++|+.+.+++.+++++++||+++|++.+++++.+. + ..+...|+|+++
T Consensus 556 l~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-~-~~~~~~D~~il~ 612 (862)
T 1gax_A 556 IYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-E-DTPTLADRFMRS 612 (862)
T ss_dssp HHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-B-CCCCHHHHHHHH
T ss_pred HhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-c-ccCCHHHHHHHH
Confidence 986 4599999999999999999999999999999998776431 1 235667888875
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.6e-134 Score=1198.93 Aligned_cols=602 Identities=27% Similarity=0.463 Sum_probs=544.7
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHhCCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCee
Q 005849 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTL 131 (674)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~ 131 (674)
|...-|+.+|+ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+
T Consensus 10 p~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~ 89 (917)
T 1ffy_A 10 PKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAP 89 (917)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCC
T ss_pred CCCCCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33344677999 89999999999999999854 3467889999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHH
Q 005849 132 WLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (674)
Q Consensus 132 ~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 211 (674)
|++||||||+|||.++++. |+++.++++++|.+.|++|++++++.++++|++||+++||+++|.|+||+|++++++
T Consensus 90 ~~~GwD~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~ 165 (917)
T 1ffy_A 90 YVPGWDTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (917)
T ss_dssp CCCEEBCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred CcccCchhhHHHHHHHHHc----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHH
Confidence 9999999999999888764 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCCeeEEEEEeecC------CCceEEEeecCCCcccCCceEEe
Q 005849 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------RSDFLTIATTRPETLFGDVALAV 285 (674)
Q Consensus 212 ~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~kf~~~~------~~~~l~v~Tt~Petl~~~~av~v 285 (674)
+|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..++++|++|++.+ .+.+++|||||||||+||+||+|
T Consensus 166 ~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v 245 (917)
T 1ffy_A 166 IFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITV 245 (917)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCC
T ss_pred HHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEE
Confidence 999999999999999999999999999999999999999999999999976 36899999999999999999999
Q ss_pred CCC---------Cc-------------------hhh----------hccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 286 NPQ---------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 286 ~p~---------~~-------------------~y~----------~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
||+ ++ +|+ +|+|+++.||+ .++++||++++||++++|||+|
T Consensus 246 ~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~~~~V~~~~GTG~V 324 (917)
T 1ffy_A 246 HPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVINGDHVTTDAGTGCV 324 (917)
T ss_dssp CTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSCCSSSCSCC
T ss_pred CCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCC-CCCeeeEEeccccccCCCCcee
Confidence 998 32 344 68999999999 5899999999999999999999
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
|+||+||++||+++++||||+++++|++|.+++++|.|+|+++++|++.|+++|+++|.+++.+++.|++|+||||++++
T Consensus 325 ~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv 404 (917)
T 1ffy_A 325 HTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPV 404 (917)
T ss_dssp CBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBC
T ss_pred EeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCCh-
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA- 486 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~- 486 (674)
++++++|||+++++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++ +..++..+.
T Consensus 405 ~~r~t~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~--g~~~~~~~~~ 480 (917)
T 1ffy_A 405 IFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN--GEIIMTKETV 480 (917)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT--SCEECCHHHH
T ss_pred EEEeccceEeeHHHHHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC--CCEecCHHHH
Confidence 999999999999999999999998 599999999999999999999999999999999999999964 222222111
Q ss_pred ---hHHHHH--------------Hhh--hcC-C-CcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEE
Q 005849 487 ---DEALEK--------------AHQ--KYG-K-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545 (674)
Q Consensus 487 ---~~~~~~--------------~~~--~~~-~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~ 545 (674)
.+.... ... .|. + ...+.+++||||||||||+++++.+++. .++ .||+|++++
T Consensus 481 ~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~--~~P~Dl~~~ 554 (917)
T 1ffy_A 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR----PEL--SFPADMYLE 554 (917)
T ss_dssp HHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS----TTC--CSSBSEEEE
T ss_pred HHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc----hhc--CCCceEEEE
Confidence 111110 000 110 1 1368999999999999999998887643 233 399999999
Q ss_pred eehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccC
Q 005849 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLS 625 (674)
Q Consensus 546 G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs 625 (674)
|+||+++|+.++++.+.++.++.||+++++|||+++.+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+
T Consensus 555 G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~~~~~D~~fs 634 (917)
T 1ffy_A 555 GSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRIS 634 (917)
T ss_dssp EGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECC
T ss_pred EecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhccCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997679999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh---hHHHHHHHhHHHHHh
Q 005849 626 IERLTANKAFTNKLWNAGKFILQNLPSQNDI---SRWEILLAYKVCVLT 671 (674)
Q Consensus 626 ~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~---~~~~~L~~~~~~~~~ 671 (674)
.+.+++.++++++|||+++|+++|+.++++. .+.+.|...|+|+|+
T Consensus 635 ~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~ 683 (917)
T 1ffy_A 635 DEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLN 683 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHH
Confidence 9999999999999999999999999887631 234456778888875
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=5.3e-132 Score=1176.22 Aligned_cols=603 Identities=27% Similarity=0.469 Sum_probs=544.3
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+.||+ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 67999 899999999999999998653 467889999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCCc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHH
Q 005849 138 HAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~~~~g~~~----~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 213 (674)
+||+|+|.++++.+ |.++ +++++++|.+.|++|++++.+.+++++++||+++||+++|.|+||+|+++++++|
T Consensus 86 ~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f 162 (821)
T 1ile_A 86 THGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSL 162 (821)
T ss_dssp CCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHh---cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHH
Confidence 99999998887643 5543 3688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCceEEcccceeccCCCCcccccchhh--ccCCCCeeEEEEEeecCC------CceEEEeecCCCcccCCceEEe
Q 005849 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAV 285 (674)
Q Consensus 214 ~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~v 285 (674)
.+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+. +.+++|||||||||+||+||+|
T Consensus 163 ~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v 242 (821)
T 1ile_A 163 KNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAV 242 (821)
T ss_dssp HHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEE
T ss_pred HHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEE
Confidence 99999999999999999999999999999995 899999999999999874 7899999999999999999999
Q ss_pred CCCC---------chh-----------------------hhccCcEEecCCCC--CceeeeeecccccccCCCcceeeCC
Q 005849 286 NPQD---------EHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISP 331 (674)
Q Consensus 286 ~p~~---------~~y-----------------------~~l~G~~~~~P~~~--~~~vpii~~~~V~~~~GTG~v~~~P 331 (674)
||+. ++| ++|+|+.+.+|+.. ++.+||++++||++++|||+||+||
T Consensus 243 ~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~P 322 (821)
T 1ile_A 243 HPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAP 322 (821)
T ss_dssp CTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCT
T ss_pred CCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecC
Confidence 9994 444 47899999999963 7999999999999999999999999
Q ss_pred CCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccccee
Q 005849 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (674)
Q Consensus 332 ~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~ 411 (674)
+||++||+++++||||+++++|++|+++++ | |+|+.++||++.|+++|+++|++++.+++.|++|+|||||+++++++
T Consensus 323 ah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~ 400 (821)
T 1ile_A 323 AFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYA 400 (821)
T ss_dssp TSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEE
T ss_pred CCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEe
Confidence 999999999999999999999999999988 7 99999999999999999999999999999999999999999999999
Q ss_pred eccccccchHHHHHHHHHHHhCCceEechhH-HHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHHH
Q 005849 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (674)
Q Consensus 412 ~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (674)
++|||++++++++++++++++ ++|+|+.. ++++.+||++++||||||||+||+|||+|+|++ ++...++.++.++.
T Consensus 401 ~~qWF~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~-~~~~~vi~~~~~l~ 477 (821)
T 1ile_A 401 TESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQELK 477 (821)
T ss_dssp CCEEEECGGGGHHHHHHHHHH--SEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHHHHH
T ss_pred cchhhhchHHHHHHHHHHhcC--eEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecC-CCcEEeeCcHHHHH
Confidence 999999999999999999874 88999998 569999999999999999999999999999976 45566766776663
Q ss_pred HHHhh------------------hcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhh
Q 005849 491 EKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF 552 (674)
Q Consensus 491 ~~~~~------------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~ 552 (674)
..... .|.++..++|++|||||||||+++|++.++||.+.++.|++|||+|++++|+||+||
T Consensus 478 ~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~ 557 (821)
T 1ile_A 478 ARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRG 557 (821)
T ss_dssp HHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGT
T ss_pred hhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhcc
Confidence 31110 111234689999999999999999999999998766789999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCC-CCCccccCHHHHHH
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT-AGQDLSLSIERLTA 631 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~-~~~d~~fs~~~l~~ 631 (674)
|+.++++++.++.++.||+++++||++++.+|+|||||+||+|+|.|++++||+|++||||++.+ +++|++|+.+.+.+
T Consensus 558 w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~ 637 (821)
T 1ile_A 558 WFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRE 637 (821)
T ss_dssp HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976 49999999999999
Q ss_pred -HHHHHHHHHHHHHHHH--hcCCCCCC-h-hHHHHHHHhHHHHHh
Q 005849 632 -NKAFTNKLWNAGKFIL--QNLPSQND-I-SRWEILLAYKVCVLT 671 (674)
Q Consensus 632 -~~~~~~kl~n~~~f~~--~~~~~~~~-~-~~~~~L~~~~~~~~~ 671 (674)
+++++++|||+++|+. .+++++.+ . .....+...|+|+++
T Consensus 638 ~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~ 682 (821)
T 1ile_A 638 TVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLA 682 (821)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHH
Confidence 6899999999999865 23433322 0 011234455666653
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.7e-116 Score=1050.10 Aligned_cols=573 Identities=23% Similarity=0.385 Sum_probs=477.7
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCCCCC---CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS---DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~---~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
+.||+ ++|++||++|+++++|++..+ ++ ++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 56898 899999999999999998765 33 78999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHH-----------HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--h
Q 005849 137 DHAGIATQLVVEKMLA-----------AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--E 203 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~-----------~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~ 203 (674)
||||+|+|.++++... ..|++..++ ++| ..|++|++++.+.++++|++||+++||+|+|+|+| |
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np 157 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL--WTF-EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFP 157 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH--HGG-GSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH--HHH-HHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCCh
Confidence 9999999988764321 124433322 122 36899999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCC--CceEEEeecCCCcccC
Q 005849 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGR--SDFLTIATTRPETLFG 279 (674)
Q Consensus 204 ~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~--~~~l~v~Tt~Petl~~ 279 (674)
.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+ ..++|+|++.+. +.+++|||||||||+|
T Consensus 158 ~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g 237 (967)
T 1wz2_A 158 PFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYG 237 (967)
T ss_dssp HHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGG
T ss_pred hHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHhhh
Confidence 999999999999999999999999999999999999999999976544 458899999874 3799999999999999
Q ss_pred CceEEeCCCC-------------c------------hh-------------hhccCcEEecCCCCCceeeeeeccccccc
Q 005849 280 DVALAVNPQD-------------E------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (674)
Q Consensus 280 ~~av~v~p~~-------------~------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~ 321 (674)
|+||+|||+. + +| ++|+|+.+.+|++ ++++||++++||+++
T Consensus 238 ~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~-~~~ipi~~~~~V~~~ 316 (967)
T 1wz2_A 238 VTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDPD 316 (967)
T ss_dssp CCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSS-SCEEEEEECSSCCSS
T ss_pred heEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCC-CCceEEEecccccCC
Confidence 9999999993 2 12 2699999999995 789999999999999
Q ss_pred CCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC-----------------------------
Q 005849 322 FGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK----------------------------- 354 (674)
Q Consensus 322 ~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~----------------------------- 354 (674)
+|||+||+|||||++||++ +++|||| ++++++.
T Consensus 317 ~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a 396 (967)
T 1wz2_A 317 NATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQA 396 (967)
T ss_dssp STTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHH
T ss_pred CCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHH
Confidence 9999999999999999985 5788877 6766532
Q ss_pred ----------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccch--H
Q 005849 355 ----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--P 421 (674)
Q Consensus 355 ----------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~--~ 421 (674)
+|.|+ +|.|+|+.++||++.|+++|+++|.+++.+.+.| +|+|+|||++++++ +++|||++++ +
T Consensus 397 ~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~ 473 (967)
T 1wz2_A 397 TKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPE 473 (967)
T ss_dssp TTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTT
T ss_pred HHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchH
Confidence 56666 7899999999999999999999999987665544 79999999999999 6999999998 4
Q ss_pred HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EE----EeCChhHHHHH
Q 005849 422 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YI----VARNADEALEK 492 (674)
Q Consensus 422 ~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~----~~~~~~~~~~~ 492 (674)
++++++++++ +++|+|+..++++.+|+++++||||||||+||+|||+ |.++...++ |+ +++..+++.
T Consensus 474 ~k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~-- 549 (967)
T 1wz2_A 474 WKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLR-- 549 (967)
T ss_dssp HHHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHH--
Confidence 9999999995 5899999999999999999999999999999999995 555422122 11 111111111
Q ss_pred HhhhcCCCcceEecCCeeeeeccC----Cc-cch-hccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHhh
Q 005849 493 AHQKYGKNVEIYQDPDVLDTWFSS----AL-WPF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGI 562 (674)
Q Consensus 493 ~~~~~~~~~~~~~~~dvld~Wfds----~~-~~~-~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~ 562 (674)
...+-+. -....+++|+||.+ +. +++ ...|+|... +++|++|||+|++++|+||+++|...+++++.
T Consensus 550 --~~~g~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~ 626 (967)
T 1wz2_A 550 --QEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHV 626 (967)
T ss_dssp --HTTCCCG-GGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHH
T ss_pred --HhcCCCh-HHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHH
Confidence 1111100 01134788999865 21 111 134566432 36789999999999999999999888888888
Q ss_pred hhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHHH
Q 005849 563 EFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLW 640 (674)
Q Consensus 563 ~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl~ 640 (674)
++.+..|+ +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++ +++++|++|+.+.++++.++++|+|
T Consensus 627 a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~ 705 (967)
T 1wz2_A 627 AIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFY 705 (967)
T ss_dssp HHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHH
T ss_pred HHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 88776555 89999999995 999999999999999999999999999999975 5559999999999999999999999
Q ss_pred HHHHHHHhc
Q 005849 641 NAGKFILQN 649 (674)
Q Consensus 641 n~~~f~~~~ 649 (674)
|+++++.++
T Consensus 706 n~~~~~~~~ 714 (967)
T 1wz2_A 706 ELISQFAEY 714 (967)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhcC
Confidence 999998765
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.8e-111 Score=993.08 Aligned_cols=532 Identities=25% Similarity=0.428 Sum_probs=433.8
Q ss_pred CCCCCCCh-HHHHHHHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
.+++.||+ ++|++||++|+++++|++..+.++++|+|+++||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus 20 ~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~ 99 (880)
T 4arc_A 20 HMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGW 99 (880)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred cccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCc
Confidence 45788999 89999999999999999887667788999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHH
Q 005849 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (674)
Q Consensus 137 D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (674)
|+||+|+|.. +.+.|+++. +|++++++.|+++|++||+++||+++++|++++|.+.++++|.+|
T Consensus 100 D~~Glpie~~----a~~~g~~p~------------~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L 163 (880)
T 4arc_A 100 DAFGLPAEGA----AVKNNTAPA------------PWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTEL 163 (880)
T ss_dssp CCCSTHHHHH----HHHTTSCHH------------HHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred cccCcHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHH
Confidence 9999997654 455677654 678889999999999999999999999999999999999999999
Q ss_pred HHcCceEEcccceeccCCCCcccccchhh------------ccCC-----------------------------------
Q 005849 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE----------------------------------- 249 (674)
Q Consensus 217 ~~kGliy~~~~~v~w~p~~~t~lsd~Ev~------------~~~~----------------------------------- 249 (674)
+++|+||++.++|+|||.|+|+|||+||. +++.
T Consensus 164 ~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~w 243 (880)
T 4arc_A 164 YKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNW 243 (880)
T ss_dssp HHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHH
T ss_pred HHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhh
Confidence 99999999999999999999999997774 2221
Q ss_pred --CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc--------------------------------
Q 005849 250 --PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF-------------------------------- 295 (674)
Q Consensus 250 --~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l-------------------------------- 295 (674)
.+..++++|++.+.+.+|+|||||||||+|+++|+|||++++++.+
T Consensus 244 ig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 323 (880)
T 4arc_A 244 IGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGV 323 (880)
T ss_dssp HCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEE
T ss_pred hccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeecc
Confidence 1235789999988888999999999999999999999999977543
Q ss_pred -cCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccC---------------CCccc
Q 005849 296 -IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK---------------DGTLN 359 (674)
Q Consensus 296 -~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~---------------~G~~~ 359 (674)
+|+.+.||++ ++++||+.++||++++|||+||+|||||++||+++++||||++++++. +|.+.
T Consensus 324 ~~g~~~~~P~~-~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ 402 (880)
T 4arc_A 324 DTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF 402 (880)
T ss_dssp EEEEEEECTTT-CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC
T ss_pred ccCcEEecCCC-CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee
Confidence 6889999995 899999999999999999999999999999999999999999998853 34433
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEec
Q 005849 360 EVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP 439 (674)
Q Consensus 360 e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P 439 (674)
++|.|.|++++||+++|++.|+++|++.+. +++
T Consensus 403 -ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------v~y-- 435 (880)
T 4arc_A 403 -NSGEFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------VNY-- 435 (880)
T ss_dssp -SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE--------------------------------------------EEE--
T ss_pred -cCcccCCCCHHHHHHHHHHHHHHcCCccee--------------------------------------------EEE--
Confidence 678999999999999999999999986442 111
Q ss_pred hhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChh--------------HHHHHHhh----hcCCCc
Q 005849 440 ERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD--------------EALEKAHQ----KYGKNV 501 (674)
Q Consensus 440 ~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~--------------~~~~~~~~----~~~~~~ 501 (674)
+++|||||||||||+|||+|+|++ ++...++.+.- ..+..... .|. +.
T Consensus 436 ------------rlrDW~iSRQRyWG~PIPi~~c~~-cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp-g~ 501 (880)
T 4arc_A 436 ------------RLRDWGVSRQRYWGAPIPMVTLED-GTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN-GM 501 (880)
T ss_dssp ------------SCCCEECEESCSSSCBCCEEEETT-SCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS-SS
T ss_pred ------------EcccceeeeeeccCCcceEEEECC-CCeEeCChHHCccccchhcccCCCCCchHhCccceeeccC-CC
Confidence 478999999999999999999976 33333322110 01111111 222 55
Q ss_pred ceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeeh--hhhhHHHHHH-----HHhhhhcCCCC
Q 005849 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMV-----MMGIEFTGSVP 569 (674)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--ii~~w~~~~~-----~~~~~~~~~~P 569 (674)
.++||+|||||||||+ |||+++++|+++ ++.+++|||+|++++|.| ++|+|++++. .+++ +.++.|
T Consensus 502 ~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~~~eP 579 (880)
T 4arc_A 502 PALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VNSDEP 579 (880)
T ss_dssp EEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CCCSCS
T ss_pred cceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc-ccCCCC
Confidence 7899999999999997 999999999864 467888999999999987 5676666643 2233 466899
Q ss_pred cceeEeeeeEe-------CCCCc------------------------------------cccccCCCccChhhHHhhhCh
Q 005849 570 FSHVYLHGLIR-------DSQGR------------------------------------KMSKTLGNVIDPIDTIKEFGA 606 (674)
Q Consensus 570 f~~v~~hg~v~-------d~~G~------------------------------------KMSKS~gN~i~~~dll~~yga 606 (674)
|+++++||||+ |.+|+ |||||+||+|+|.|++++|||
T Consensus 580 Fk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGA 659 (880)
T 4arc_A 580 AKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGA 659 (880)
T ss_dssp EEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCH
T ss_pred hHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCc
Confidence 99999999996 78887 999999999999999999999
Q ss_pred hHHHHHHhcCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 607 DALRFTISLGT-AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 607 D~lR~~l~~~~-~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
|++|||+++.+ +++|++|+.+.+++++++++|+||+++++........ .+...|...|+|+++
T Consensus 660 DalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~--~~~~~l~~~D~~ll~ 723 (880)
T 4arc_A 660 DTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAA--LNVDALTENQKALRR 723 (880)
T ss_dssp HHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCC--CCSTTCCHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccCCHHHHHHHH
Confidence 99999999985 4999999999999999999999999998876532111 111234455666653
No 6
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.9e-110 Score=986.77 Aligned_cols=572 Identities=23% Similarity=0.381 Sum_probs=473.4
Q ss_pred CCCCh-HHHHHHHHHHHhCCCCCCCCCC--CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 005849 61 KTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (674)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~--~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D 137 (674)
+.||+ ++|++||++|+++++|++..+. ++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 56898 8999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH----------H-HcCCCccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCC--
Q 005849 138 HAGIATQLVVEKML----------A-AEGIKRVELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD-- 202 (674)
Q Consensus 138 ~~Gl~~e~~ve~~~----------~-~~g~~~~~l~~e~f--~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~-- 202 (674)
+||+|++..+++.. + ..|++ ++++ ...|++|++++.+.|+++|++||+++||+++|+|+|
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~ 156 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVP-----EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLF 156 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCC-----HHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTS
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCc
Confidence 99999988776421 0 11222 2332 236899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCCCC--eeEEEEEeecCCC--ceEEEeecCCCccc
Q 005849 203 EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRS--DFLTIATTRPETLF 278 (674)
Q Consensus 203 ~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~kf~~~~~~--~~l~v~Tt~Petl~ 278 (674)
+.|.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+ ..++|+|++.+.+ .+++|||||||||+
T Consensus 157 ~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~ 236 (810)
T 1wkb_A 157 PPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVY 236 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGG
T ss_pred hHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhh
Confidence 9999999999999999999999999999999999999999999976554 4577999997743 78999999999999
Q ss_pred CCceEEeCCCCc-------------------------hh-------------hhccCcEEecCCCCCceeeeeecccccc
Q 005849 279 GDVALAVNPQDE-------------------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (674)
Q Consensus 279 ~~~av~v~p~~~-------------------------~y-------------~~l~G~~~~~P~~~~~~vpii~~~~V~~ 320 (674)
|++||+|||+.+ +| ++|+|+.+.+|++ ++++||++++||++
T Consensus 237 g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~ipi~~~~~V~~ 315 (810)
T 1wkb_A 237 GVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVDP 315 (810)
T ss_dssp GCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSS-CCEEEEEECTTSCT
T ss_pred hhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCC-CCeeEEEecCcccC
Confidence 999999999942 12 3689999999995 89999999999999
Q ss_pred cCCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC----------------------------
Q 005849 321 EFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK---------------------------- 354 (674)
Q Consensus 321 ~~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~---------------------------- 354 (674)
++|||+||+|||||++||++ +++|||| ++++++.
T Consensus 316 ~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~ 395 (810)
T 1wkb_A 316 DNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQ 395 (810)
T ss_dssp TSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHH
T ss_pred CCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhh
Confidence 99999999999999999986 4678877 7777632
Q ss_pred -----------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccce-eeccccccchH-
Q 005849 355 -----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP- 421 (674)
Q Consensus 355 -----------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~-~~~qwfi~~~~- 421 (674)
+|.++ +|.|+|+.+.+|++.|++.|+++|++.+.+.+.| +|+|+|||++++++ +++|||+++++
T Consensus 396 ~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~ 472 (810)
T 1wkb_A 396 ATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNP 472 (810)
T ss_dssp HHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCH
T ss_pred hhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChH
Confidence 46665 7899999999999999999999999988776654 69999999999999 79999999995
Q ss_pred -HHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccce---eeecCCccc--EE----EeCChhHHHH
Q 005849 422 -LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YI----VARNADEALE 491 (674)
Q Consensus 422 -~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~---~~~~~~~~~--~~----~~~~~~~~~~ 491 (674)
++++++++++ +++|+|+..++++.+|+++++||||||||+||+|||+ |.++...++ |+ +++..+++.
T Consensus 473 ~~~~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~- 549 (810)
T 1wkb_A 473 EWKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLR- 549 (810)
T ss_dssp HHHHHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhH-
Confidence 9999999996 5889999999999999999999999999999999993 555432222 11 111111110
Q ss_pred HHhhhcCCCcceEecCCeeeeeccC----Ccc-ch-hccCCCCCC----hhhhhhcCCcceeEEeehhhhhHHHHHHHHh
Q 005849 492 KAHQKYGKNVEIYQDPDVLDTWFSS----ALW-PF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMG 561 (674)
Q Consensus 492 ~~~~~~~~~~~~~~~~dvld~Wfds----~~~-~~-~~~~~~~~~----~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~ 561 (674)
...+-.. -...++++|+||.+ +.+ +. ...|+|... +++|++|||+|++++|+||+++|...+++.+
T Consensus 550 ---~~~~~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~ 625 (810)
T 1wkb_A 550 ---QEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNH 625 (810)
T ss_dssp ---HTTCCCG-GGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHH
T ss_pred ---hhcCCCH-HHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHH
Confidence 0111000 01134688888853 211 11 134555321 3578899999999999999999988888888
Q ss_pred hhhcCCCCc-ceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHH
Q 005849 562 IEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKL 639 (674)
Q Consensus 562 ~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl 639 (674)
.++.+..|+ +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++ +++++|++|+.+.++++.++++|+
T Consensus 626 ~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl 704 (810)
T 1wkb_A 626 VAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERF 704 (810)
T ss_dssp HHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHH
T ss_pred HHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHH
Confidence 877775444 89999999995 999999999999999999999999999999985 556999999999999999999999
Q ss_pred HHHHHHHHhc
Q 005849 640 WNAGKFILQN 649 (674)
Q Consensus 640 ~n~~~f~~~~ 649 (674)
||+++++.++
T Consensus 705 ~n~~~~~~~~ 714 (810)
T 1wkb_A 705 YELISQFAEY 714 (810)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=5.9e-109 Score=978.73 Aligned_cols=532 Identities=27% Similarity=0.435 Sum_probs=444.4
Q ss_pred CCCh-HHHHHHHHHHHhCCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 005849 62 TFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 62 ~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~ 139 (674)
.||+ ++|++||++|+++++|+... +.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||+|
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6898 89999999999999999887 556778999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHc
Q 005849 140 GIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK 219 (674)
Q Consensus 140 Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k 219 (674)
|+|+|.++ .+.|+++ ++|++++++.|+++|++||+++||+++|.|++++|.+.++++|.+|+++
T Consensus 83 Glpie~~a----~k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 146 (878)
T 2v0c_A 83 GLPAENAA----LKFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK 146 (878)
T ss_dssp SHHHHHHH----HHTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHH----HHcCCCH------------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 99977654 4457665 3788999999999999999999999999999999999999999999999
Q ss_pred CceEEcccceeccCCCCcccccchhhccCCC-------------------------------------------------
Q 005849 220 GLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP------------------------------------------------- 250 (674)
Q Consensus 220 Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~------------------------------------------------- 250 (674)
|+||++.++|+|||.|+|+|||+||++..+.
T Consensus 147 GliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 147 GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226 (878)
T ss_dssp TCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCE
T ss_pred CCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhcc
Confidence 9999999999999999999999999753210
Q ss_pred CeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhc-----------------------------------
Q 005849 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF----------------------------------- 295 (674)
Q Consensus 251 ~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l----------------------------------- 295 (674)
+..++++|++.+.+.+|+|||||||||+|++||+|||+++++..+
T Consensus 227 s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (878)
T 2v0c_A 227 SEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVF 306 (878)
T ss_dssp EEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEE
T ss_pred ccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEe
Confidence 134678899988889999999999999999999999999876543
Q ss_pred cCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCC---------cccc-----c
Q 005849 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG---------TLNE-----V 361 (674)
Q Consensus 296 ~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G---------~~~e-----~ 361 (674)
+|+.+.||++ ++++||+.++||++++|||+||+|||||++||+++++||||++++++.+| .+++ +
T Consensus 307 ~g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~n 385 (878)
T 2v0c_A 307 LGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVN 385 (878)
T ss_dssp EEEEEECTTT-CCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECS
T ss_pred cCcEEECCCC-CCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEec
Confidence 7889999994 89999999999999999999999999999999999999999999997532 2322 4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechh
Q 005849 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER 441 (674)
Q Consensus 362 ~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~ 441 (674)
+|.|.|+++.||+++|++.|+++|++.+ .+++
T Consensus 386 s~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--------------------------------------------~v~~---- 417 (878)
T 2v0c_A 386 SGPFDGTESEEGKRKVIAWLEEKGLGKG--------------------------------------------RVTY---- 417 (878)
T ss_dssp SGGGTTCBHHHHHHHHHHHHHHHTSEEE--------------------------------------------EEEE----
T ss_pred CCCCCCcCHHHHHHHHHHHHHHCCCCCC--------------------------------------------ceEE----
Confidence 6889999999999999999999998422 1111
Q ss_pred HHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeC--------ChhHH----------HHHHh----hhc-C
Q 005849 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVAR--------NADEA----------LEKAH----QKY-G 498 (674)
Q Consensus 442 ~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~--------~~~~~----------~~~~~----~~~-~ 498 (674)
+++|||||||||||+|||+|+|++ ++...+.. .+++. ..... ..| .
T Consensus 418 ----------rlrDW~ISRQR~WG~PIPi~~~~~-~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 418 ----------RLRDWLISRQRYWGTPIPMVHCEA-CGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp ----------SCCCEECEESCSSSEECCEEEETT-TEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred ----------ecccchhhcccccCCcccEEEECC-CCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence 578999999999999999999975 33332221 00111 00000 122 1
Q ss_pred CCcceEecCCeeeeeccCCccchhccCCCCCC-----hhhhhhcCCcceeEEeehh--hhhHHHHHHHH---hhh-hcCC
Q 005849 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDI--LFFWVARMVMM---GIE-FTGS 567 (674)
Q Consensus 499 ~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Di--i~~w~~~~~~~---~~~-~~~~ 567 (674)
++..++|++|||||||||+ ||++.+++|++. ++.+++|||+|++++|.|+ +|+|++++... ++. +.++
T Consensus 487 cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~ 565 (878)
T 2v0c_A 487 CGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVE 565 (878)
T ss_dssp TCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCS
T ss_pred CCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 2457999999999999997 999999999863 4678899999999999875 56666666432 222 4678
Q ss_pred CCcceeEeeeeEeCC----------------------------------------------CC-------ccccccCCCc
Q 005849 568 VPFSHVYLHGLIRDS----------------------------------------------QG-------RKMSKTLGNV 594 (674)
Q Consensus 568 ~Pf~~v~~hg~v~d~----------------------------------------------~G-------~KMSKS~gN~ 594 (674)
.||++|++|||++|. +| +|||||+||+
T Consensus 566 ~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNv 645 (878)
T 2v0c_A 566 EPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNG 645 (878)
T ss_dssp CSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCC
T ss_pred CchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCc
Confidence 999999999999973 99 9999999999
Q ss_pred cChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHHhHHHHHh
Q 005849 595 IDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP-SQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 595 i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~~~~~-~~~~~~~~~~L~~~~~~~~~ 671 (674)
|+|.|++++||+|++|||+++ +++++|++|+.+.++++.++++|+||++++...++. ... ..+...|...|+|+++
T Consensus 646 VdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~-~~~~~~l~~~D~~ll~ 723 (878)
T 2v0c_A 646 VMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSG-VFQAEALEGKDRELYG 723 (878)
T ss_dssp CBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CCCGGGCCHHHHHHHH
T ss_pred ccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccCcccCCHHHHHHHH
Confidence 999999999999999999998 555999999999999999999999999988765431 111 1123345667888774
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.3e-73 Score=650.24 Aligned_cols=389 Identities=21% Similarity=0.278 Sum_probs=321.7
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f 166 (674)
+..++|+|++|+|||||.||||||++++++|+++||+||+||+|+|++||||||+|||.+ +.++|++++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~----a~k~g~~~~------- 74 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEA----AKQKQVSPY------- 74 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHH----HHHTTSCHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHH----HHHcCCCHH-------
Confidence 346789999999999999999999999999999999999999999999999999996654 456788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
++++++++.+++++++|||++||. +.|++++|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.||+.
T Consensus 75 -----e~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 75 -----DFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCCSEE--EETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHhCCccCcC--ccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhc
Confidence 577889999999999999999974 4599999999999999999999999999999999999999999987742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCc
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (674)
| ++.| +.+++|+|||++
T Consensus 149 ---~----------------------~~~g--------------------------------------~~~~~~~~sg~~ 165 (542)
T 3u1f_A 149 ---V----------------------DKDG--------------------------------------NPCKVSLESGHV 165 (542)
T ss_dssp ---E----------------------CTTS--------------------------------------CEEEEETTTCCB
T ss_pred ---c----------------------cccC--------------------------------------ccccccCCCCCc
Confidence 0 1112 234789999999
Q ss_pred ccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhc-CCCceeecccC----CCcccceeeecCCcccEE
Q 005849 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLW----WGHRIPVWYIVGKEEEYI 481 (674)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~-l~DW~iSRq~~----WG~piP~~~~~~~~~~~~ 481 (674)
++++.++|||++++++++++++.++++...+.|+..++.+.+|+++ ++|||||||++ ||+|+|..
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~---------- 235 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN---------- 235 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE----------
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCC----------
Confidence 9999999999999999999999999999999999999999999964 99999999998 99999931
Q ss_pred EeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCC---------hhhhhhcCCcceeEEeehhhhh
Q 005849 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF 552 (674)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~---------~~~f~~~~P~d~~~~G~Dii~~ 552 (674)
+..++++|||+...+....++..+. .......||.|++++|+||++|
T Consensus 236 ------------------------~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~f 291 (542)
T 3u1f_A 236 ------------------------PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKF 291 (542)
T ss_dssp ------------------------EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHH
T ss_pred ------------------------cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEeccccccc
Confidence 1357888988876665554432221 0112235899999999999998
Q ss_pred HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHHHHHH
Q 005849 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA 631 (674)
Q Consensus 553 w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~~l~~ 631 (674)
|.....++.+.. +..|++.+++||++. .+|+|||||+||+|+|.|++++||+|+|||||++.++ ++|++|+++.+.+
T Consensus 292 h~~~~~a~l~~~-g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~ 369 (542)
T 3u1f_A 292 HAIYWPAFLLSA-GLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIA 369 (542)
T ss_dssp HHTHHHHHHHHH-TCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHH
T ss_pred ccchhHHHHHhh-cccccceecccccee-cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHH
Confidence 543333322222 445679999999975 7999999999999999999999999999999998665 9999999999987
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCCC-hhHHHHHHHhHHHHHh
Q 005849 632 --NKAFTNKLWNAGKFILQNLPSQND-ISRWEILLAYKVCVLT 671 (674)
Q Consensus 632 --~~~~~~kl~n~~~f~~~~~~~~~~-~~~~~~L~~~~~~~~~ 671 (674)
++.++++|||++++++....+++. ......+...|+|+++
T Consensus 370 ~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~ 412 (542)
T 3u1f_A 370 RLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQ 412 (542)
T ss_dssp HHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHH
Confidence 345889999999998876554442 1233456667888764
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3.8e-73 Score=662.14 Aligned_cols=381 Identities=22% Similarity=0.292 Sum_probs=318.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~-~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|+|++|||+||+|||.+++ ++|++++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~----k~G~~p~--------- 68 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL----KEGRSPR--------- 68 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTCCHH---------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHH----HcCCCHH---------
Confidence 46999999999999999999998 999999999999999999999999999999877665 4488765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++++.|++++++|||++|| .+.|++++|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 69 ---e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--- 140 (722)
T 1rqg_A 69 ---EIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--- 140 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---
Confidence 67899999999999999998886 3669999999999999999999999999999999999999999985441
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
||
T Consensus 141 --------------------------------------------------------------------------gt---- 142 (722)
T 1rqg_A 141 --------------------------------------------------------------------------GT---- 142 (722)
T ss_dssp --------------------------------------------------------------------------SB----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 22
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
||.|+.+ +..|.+|++||.. .++.++..|+|+|||++++
T Consensus 143 -cP~c~~~----------------~~~Gd~c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~ 181 (722)
T 1rqg_A 143 -CPYCGAE----------------DQKGDQCEVCGRP------------------------LTPEILINPRCAICGRPIS 181 (722)
T ss_dssp -CSSSCCS----------------CCCTTTCSSSCCC------------------------CCTTSSBSCBCTTTCCBCE
T ss_pred -cCccCCc----------------cCCcchhhhcccc------------------------cChhhccCCcccCCCcEeE
Confidence 6766553 3578888888753 1234567899999999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHH-hcCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
++.++|||++++++++++++.++++. +|++.++++.+|| ++++|||||||++||+|||+|++..
T Consensus 182 ~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~------------ 246 (722)
T 1rqg_A 182 FRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDM------------ 246 (722)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSS------------
T ss_pred EEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccccCccccCccccCC------------
Confidence 99999999999999999999998653 5999999999999 8999999999999999999864311
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccC-CCCC--ChhhhhhcCCc-c-----eeEEeehhhhhHHHHHH
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFYPT-T-----MLETGHDILFFWVARMV 558 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~-~~~~--~~~~f~~~~P~-d-----~~~~G~Dii~~w~~~~~ 558 (674)
+.+++|+|||+.+.|++..+ |+.. ...+|++|||. | +++.|+||++||-....
T Consensus 247 ------------------~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wp 308 (722)
T 1rqg_A 247 ------------------KGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWP 308 (722)
T ss_dssp ------------------TTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHH
T ss_pred ------------------CCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhH
Confidence 24799999999888776543 2221 11358888873 3 89999999998432222
Q ss_pred HHhhhhc---------C-CCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-CCccccCHH
Q 005849 559 MMGIEFT---------G-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (674)
Q Consensus 559 ~~~~~~~---------~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~~d~~fs~~ 627 (674)
++..+.. + .+| +++++|||+++ +|+|||||+||+|+|.|++++||+|++||||++..+ ++|++|+++
T Consensus 309 A~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~ 386 (722)
T 1rqg_A 309 AFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFS 386 (722)
T ss_dssp HHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHH
T ss_pred HHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHH
Confidence 2212221 2 578 99999999996 999999999999999999999999999999999855 999999999
Q ss_pred HHHH--HHHHHHHHHHHHHH
Q 005849 628 RLTA--NKAFTNKLWNAGKF 645 (674)
Q Consensus 628 ~l~~--~~~~~~kl~n~~~f 645 (674)
.+.. +.+++++++|++++
T Consensus 387 ~~~~~~n~~l~~~l~N~~~R 406 (722)
T 1rqg_A 387 DFKVRINEELVNNLGNFVHR 406 (722)
T ss_dssp HHHHHHHHTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9987 44578888887654
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.8e-69 Score=610.82 Aligned_cols=360 Identities=25% Similarity=0.405 Sum_probs=310.7
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHH
Q 005849 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (674)
Q Consensus 87 ~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f 166 (674)
.+++.|++++|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.++ .++|+++.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~------- 77 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA----AKEGIPAA------- 77 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH----HHHTSCHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHH----HHcCCCHH-------
Confidence 4567899999999999999999999999999999999999999999999999999976554 44587764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhc
Q 005849 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (674)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (674)
++++++.+.+++++++|||++| ..+.|+++.|.+.++++|++|+++|+||++.++|+|||.|+|++++.|+++
T Consensus 78 -----~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~ 150 (524)
T 2x1l_A 78 -----ELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE 150 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc
Confidence 5678889999999999999887 334599999999999999999999999999999999999999999977742
Q ss_pred cCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcc
Q 005849 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (674)
Q Consensus 247 ~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~ 326 (674)
.+
T Consensus 151 g~------------------------------------------------------------------------------ 152 (524)
T 2x1l_A 151 QP------------------------------------------------------------------------------ 152 (524)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred eeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccccc-CCCC
Q 005849 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ-RGGE 405 (674)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~-r~~~ 405 (674)
+| +.|+ +||+
T Consensus 153 ----------------------------~G-----------------------------------------~~c~~~~g~ 163 (524)
T 2x1l_A 153 ----------------------------DG-----------------------------------------TRIATETGA 163 (524)
T ss_dssp ----------------------------TS-----------------------------------------CEEETTTCC
T ss_pred ----------------------------CC-----------------------------------------CccccccCC
Confidence 01 1477 8999
Q ss_pred cccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHH-hcCCCceeecccC-CCcccceeeecCCcccEEEe
Q 005849 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLW-WGHRIPVWYIVGKEEEYIVA 483 (674)
Q Consensus 406 ~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~iSRq~~-WG~piP~~~~~~~~~~~~~~ 483 (674)
+++++.++|||++++++++++++.++++...+.|+..++.+.+|+ ++++||||||||. ||+|+| |.
T Consensus 164 ~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~----------- 231 (524)
T 2x1l_A 164 PVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DH----------- 231 (524)
T ss_dssp BEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TE-----------
T ss_pred cceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CC-----------
Confidence 999999999999999999999999987656688999999999999 5899999999985 999999 21
Q ss_pred CChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhh
Q 005849 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (674)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~ 563 (674)
+.+|+||||||+++|++..+||.+....|+++||.|++++|+||++||.....++..+
T Consensus 232 ----------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~ 289 (524)
T 2x1l_A 232 ----------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMS 289 (524)
T ss_dssp ----------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHH
T ss_pred ----------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHH
Confidence 1368999999999999999999876568999999999999999999865544333333
Q ss_pred hcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHH--HHHHHHH
Q 005849 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANK--AFTNKLW 640 (674)
Q Consensus 564 ~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~--~~~~kl~ 640 (674)
+ |..||+++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+.. +++++|+
T Consensus 290 ~-g~~~~~~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 290 A-GLPLPKRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp H-TCCCCSCEEEECCEEE-CSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred C-CCCCCcEEEECcEEEe-CCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3 4567799999999995 999999999999999999999999999999998 666999999999998754 3667788
Q ss_pred HHHHHHH
Q 005849 641 NAGKFIL 647 (674)
Q Consensus 641 n~~~f~~ 647 (674)
|+++++.
T Consensus 368 n~~~r~~ 374 (524)
T 2x1l_A 368 NLAQRSL 374 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876644
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6e-69 Score=612.49 Aligned_cols=393 Identities=21% Similarity=0.298 Sum_probs=322.9
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCc
Q 005849 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (674)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~ 158 (674)
..|++....++++|+|+.|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||.+++. .+.+.|+++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~----~a~~~g~~p 90 (564)
T 3kfl_A 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAE----AAAKQGVSP 90 (564)
T ss_dssp ---------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHH----HHHHTTCCH
T ss_pred hhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHH----HHHHcCCCH
Confidence 4577776667789999999999999999999999999999999999999999999999999998654 445678887
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcc
Q 005849 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238 (674)
Q Consensus 159 ~~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~ 238 (674)
+ ++++++.+.+++++++|||++|+ .+.|+++.|.+.++++|.+|+++|+||++...++||+.|+++
T Consensus 91 ~------------~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 156 (564)
T 3kfl_A 91 M------------DFTTSVSSEFKQCFQEMNYDMNY--FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF 156 (564)
T ss_dssp H------------HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE
T ss_pred H------------HHHHHHHHHHHHHHHHcCCCCCc--cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC
Confidence 6 56788999999999999999992 345999999999999999999999999999999999999999
Q ss_pred cccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccc
Q 005849 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYV 318 (674)
Q Consensus 239 lsd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V 318 (674)
+++.|+...
T Consensus 157 l~~~~~~~~----------------------------------------------------------------------- 165 (564)
T 3kfl_A 157 LTAQNVADG----------------------------------------------------------------------- 165 (564)
T ss_dssp ECGGGEEEE-----------------------------------------------------------------------
T ss_pred CCHHHhccC-----------------------------------------------------------------------
Confidence 999777421
Q ss_pred cccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccc
Q 005849 319 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (674)
Q Consensus 319 ~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p 398 (674)
|| .+|..| +
T Consensus 166 -----------~~----------------------~~g~~c---~----------------------------------- 174 (564)
T 3kfl_A 166 -----------VD----------------------RDGKPC---K----------------------------------- 174 (564)
T ss_dssp -----------EC----------------------TTSCEE---E-----------------------------------
T ss_pred -----------cC----------------------CCCCEe---c-----------------------------------
Confidence 00 112111 0
Q ss_pred cccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec----ccCCCcccceeee
Q 005849 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR----QLWWGHRIPVWYI 473 (674)
Q Consensus 399 ~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR----q~~WG~piP~~~~ 473 (674)
.|-+||++++++.++|||++++++++.+++.++++...+.|+..++.+.+||+ +++|||||| +++||+|||.
T Consensus 175 ~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~--- 251 (564)
T 3kfl_A 175 VSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG--- 251 (564)
T ss_dssp EETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT---
T ss_pred cccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC---
Confidence 01247999999999999999999999999999987777899999999999996 899999999 8999999992
Q ss_pred cCCcccEEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCC-CCCChh-----hh--hhcCCcceeEE
Q 005849 474 VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDVSAD-----DF--KKFYPTTMLET 545 (674)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~-~~~~~~-----~f--~~~~P~d~~~~ 545 (674)
.+.+|+||||||+++|++.++| +.+... +| +++||+|++++
T Consensus 252 -------------------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~ 300 (564)
T 3kfl_A 252 -------------------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVV 300 (564)
T ss_dssp -------------------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE
T ss_pred -------------------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEE
Confidence 1357999999999999999988 765422 37 89999999999
Q ss_pred eehhhhh----HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCC
Q 005849 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQ 620 (674)
Q Consensus 546 G~Dii~~----w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~ 620 (674)
|+||++| |+++++++ |..|+++|++||++ +.+|+|||||+||+|+|.|++++||+|++||||++ .++.+
T Consensus 301 GkDii~FH~~~wpa~L~a~-----g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~ 374 (564)
T 3kfl_A 301 GKDILKFHAIYWPAFLMSA-----ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQD 374 (564)
T ss_dssp EGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSC
T ss_pred eecccchHHHHHHHHHHhC-----CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 9999998 55554443 34577999999999 59999999999999999999999999999999999 45599
Q ss_pred ccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCChh-HHHHHHHhHHHHHh
Q 005849 621 DLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDIS-RWEILLAYKVCVLT 671 (674)
Q Consensus 621 d~~fs~~~l~~--~~~~~~kl~n~~~f~~~~~~~~~~~~-~~~~L~~~~~~~~~ 671 (674)
|++|+++.+.+ +.+++++|+|+++++...+..++... ....+...|+|+++
T Consensus 375 D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~ 428 (564)
T 3kfl_A 375 DGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIA 428 (564)
T ss_dssp CEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHH
Confidence 99999999987 45689999999998876543332111 11234455666653
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.5e-68 Score=602.27 Aligned_cols=375 Identities=26% Similarity=0.392 Sum_probs=309.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|+.|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|+||.+++.. +.+.|.+++
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~----a~~~g~~~~--------- 90 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS----ARKEGITPR--------- 90 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHH----HHHHTSCHH---------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHH----HHHcCCCHH---------
Confidence 5689999999999999999999999999999999999999999999999999996544 456688775
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.++++|++|||.+| ..+.|+++.|.+.++++|.+|+++|+||++.++++||+.|++++++.|++..+
T Consensus 91 ---~~~~~~~~~~~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (536)
T 4dlp_A 91 ---DLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRA 165 (536)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECT
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCC
Confidence 5678899999999999999988 33459999999999999999999999999999999999999999997764210
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
+| -.|++||++++
T Consensus 166 --------------------------~g-----------------------------------------~~c~~~g~~~e 178 (536)
T 4dlp_A 166 --------------------------DG-----------------------------------------VRYGPQGTPVE 178 (536)
T ss_dssp --------------------------TS-----------------------------------------CEECTTSSBCE
T ss_pred --------------------------CC-----------------------------------------CcccCCCCcce
Confidence 11 14788999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEeCCh
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (674)
++.++|||++++++++++++.++++...+.|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 179 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~----~----------- 243 (536)
T 4dlp_A 179 WVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG----D----------- 243 (536)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT----C-----------
T ss_pred EEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC----C-----------
Confidence 9999999999999999999999987777899999999999996 79999999985 69999992 1
Q ss_pred hHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhh----HHHHHHHHhh
Q 005849 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGI 562 (674)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~----w~~~~~~~~~ 562 (674)
+.+|+||||||+++|++.++||... .+|+++||.|++++|+||++| |+++++++
T Consensus 244 -------------------~~~v~yvWfda~~~y~s~~~~~~~~-~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-- 301 (536)
T 4dlp_A 244 -------------------EKHVMYVWVDALTNYITALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLMSA-- 301 (536)
T ss_dssp -------------------TTSEECHHHHHHHHHHHTTTTTCTT-SGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT--
T ss_pred -------------------CCCceEEeeCCcHHHHHhcCCCCCc-hHHHhhCCcceEEeechHHHHHHHHHHHHHHHC--
Confidence 3589999999999999999999766 689999999999999999998 55554442
Q ss_pred hhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC-CCCCccccCHHHHHH--HHHHHHHH
Q 005849 563 EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTA--NKAFTNKL 639 (674)
Q Consensus 563 ~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~-~~~~d~~fs~~~l~~--~~~~~~kl 639 (674)
+..|+++|++||+++ .+|+|||||+||+|+|.|++++||+|++||||++. ++.+|++|+++.+.+ +.++++++
T Consensus 302 ---g~~~~~~v~~hg~v~-~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l 377 (536)
T 4dlp_A 302 ---QLPLPKRVFAHGFLF-NRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDL 377 (536)
T ss_dssp ---TCCCCSCEEEECCEE-C------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCC
T ss_pred ---CCCCCcEEEeeeeEe-eCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 345779999999998 49999999999999999999999999999999994 559999999999977 45688899
Q ss_pred HHHHHHH----HhcCCCCCChhHHHHHHHhHHHHHh
Q 005849 640 WNAGKFI----LQNLPSQNDISRWEILLAYKVCVLT 671 (674)
Q Consensus 640 ~n~~~f~----~~~~~~~~~~~~~~~L~~~~~~~~~ 671 (674)
+|+++++ ..++.+..+. ...+...|+|+++
T Consensus 378 ~N~~~R~~~~~~~~~~~~~p~--~~~~~~~d~~ll~ 411 (536)
T 4dlp_A 378 GNLAQRSLSMIAKNCEGKVPQ--PGAFSEADKAILD 411 (536)
T ss_dssp HHHHHHHHHHHHHHSTTBCCC--CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCC--cccCCHHHHHHHH
Confidence 9987654 3445443331 1234566777764
No 13
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1.4e-68 Score=610.08 Aligned_cols=379 Identities=23% Similarity=0.385 Sum_probs=321.8
Q ss_pred CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHH
Q 005849 86 ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (674)
Q Consensus 86 ~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~ 165 (674)
+.++++|+|+.|||||||+|||||+++++++|+++||+||+||+|++++|||+||++++..++ +.|++++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~----~~g~~~~------ 83 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ----QLGITPE------ 83 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTSCHH------
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHH----HhCCCHH------
Confidence 346788999999999999999999999999999999999999999999999999999766554 4577765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhh
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~ 245 (674)
++++++.+.|+++|++|||++| +.+.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|+
T Consensus 84 ------~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 84 ------QMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred ------HHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC
Confidence 4567888999999999999776 45669999999999999999999999999999999999999999986552
Q ss_pred ccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCc
Q 005849 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (674)
Q Consensus 246 ~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG 325 (674)
|
T Consensus 156 -----------------------------------------------------------------------------g-- 156 (560)
T 3h99_A 156 -----------------------------------------------------------------------------G-- 156 (560)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 1
Q ss_pred ceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCC
Q 005849 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 405 (674)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~ 405 (674)
.||.|+.. ++.|..|++||.+ ..+.+...|+|++||+
T Consensus 157 ---~cp~c~~~----------------~~~gd~ce~cg~~------------------------~~~~~l~~~~~~~~g~ 193 (560)
T 3h99_A 157 ---TCPKCKSP----------------DQYGDNCEVCGAT------------------------YSPTELIEPKSVVSGA 193 (560)
T ss_dssp ---ECTTTCCS----------------SEETTBCTTTCCB------------------------CCGGGCEEEEETTTCC
T ss_pred ---CCCCCCCc----------------ccccchhhhcccc------------------------CChhhhcCCccccCCC
Confidence 26666542 4678899999964 2233556799999999
Q ss_pred cccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeeccc-CCCcccceeeecCCcccEEEe
Q 005849 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVA 483 (674)
Q Consensus 406 ~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSRq~-~WG~piP~~~~~~~~~~~~~~ 483 (674)
+++++.++|||++++++++.+++.++++ .+|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 194 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~----~-------- 258 (560)
T 3h99_A 194 TPVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN----A-------- 258 (560)
T ss_dssp CCEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT----C--------
T ss_pred CceEEecceEEEEHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC----C--------
Confidence 9999999999999999999999999863 367788999999997 89999999999 89999993 1
Q ss_pred CChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhcc-CCCCCC--hhhhhhcCCcc-----eeEEeehhhhh---
Q 005849 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILFF--- 552 (674)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~~--~~~f~~~~P~d-----~~~~G~Dii~~--- 552 (674)
+.+|+|||||+.++|++.. +|+.+. ..+|++|||.| +++.|+||+++
T Consensus 259 ----------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 259 ----------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ----------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred ----------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHH
Confidence 2579999999998887765 344321 15799999999 99999999994
Q ss_pred -HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCC-C-CccccCHHHH
Q 005849 553 -WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERL 629 (674)
Q Consensus 553 -w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~-~-~d~~fs~~~l 629 (674)
|++.+++++ ..+| +++++||++++ +|+|||||+||+|+|.|++++||+|++||||++..+ . +|++|+++.+
T Consensus 317 ~~~a~l~~~g----~~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~ 390 (560)
T 3h99_A 317 FWPAMLEGSN----FRKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 390 (560)
T ss_dssp HHHHHHHHTT----BCCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHH
T ss_pred HHHHHHHhCC----CCCC-cEEEEEeEEEe-CCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHH
Confidence 555444433 2567 89999999995 999999999999999999999999999999999776 6 8999999998
Q ss_pred HH--HHHHHHHHHHHHHHHH
Q 005849 630 TA--NKAFTNKLWNAGKFIL 647 (674)
Q Consensus 630 ~~--~~~~~~kl~n~~~f~~ 647 (674)
.. ++++++++||++.++.
T Consensus 391 ~~~~~~~l~~~l~n~~~R~~ 410 (560)
T 3h99_A 391 VQRVNADIVNKVVNLASRNA 410 (560)
T ss_dssp HHHHHHHCCCCCTHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 75 6788999999875543
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.7e-67 Score=594.22 Aligned_cols=351 Identities=27% Similarity=0.381 Sum_probs=304.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.++ .++|+++.
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~---------- 68 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA----QAAGEDPK---------- 68 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHH----HHHTSCHH----------
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHH----HHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999965544 44587765
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccCC
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++||+++| ..+.|+++.|.+.++++|++|+++|+||++.++++|||.|+|++++.|+.
T Consensus 69 --~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~---- 140 (500)
T 2d5b_A 69 --AFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV---- 140 (500)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB----
T ss_pred --HHHHHHHHHHHHHHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc----
Confidence 5678899999999999999887 34669999999999999999999999999999999999999999874331
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.+.|+|||.+++.
T Consensus 141 -------------------------------------------------------------------~g~c~~~~~~v~~ 153 (500)
T 2d5b_A 141 -------------------------------------------------------------------EGLCPIHGRPVER 153 (500)
T ss_dssp -------------------------------------------------------------------TTBCTTTCSBCEE
T ss_pred -------------------------------------------------------------------CCcCCCCCCeeeE
Confidence 0248999999999
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--cc-CCCcccceeeecCCcccEEEeCC
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVARN 485 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q~-~WG~piP~~~~~~~~~~~~~~~~ 485 (674)
+.++|||++++++++.+++.++++...+.|+..++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 154 ~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~------------ 219 (500)
T 2d5b_A 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D------------ 219 (500)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E------------
T ss_pred EecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C------------
Confidence 999999999999999999999876656789999999999994 689999999 66 69999993 1
Q ss_pred hhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
+++|+||||||+++|++..+|+.+. +|+++||.|++++|+||+++|.....++..++
T Consensus 220 --------------------~~~v~~vWfds~~~y~~~~g~~~~~--~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~- 276 (500)
T 2d5b_A 220 --------------------ENHVTFVWFDALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA- 276 (500)
T ss_dssp --------------------EEEEECHHHHHHTHHHHTTTTTTCH--HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-
T ss_pred --------------------CCCeeEEccccchhhHHHcCCCCCc--hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc-
Confidence 2479999999999999999998763 38889999999999999996554333332223
Q ss_pred CCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHH--HHHHHHHHHH
Q 005849 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTAN--KAFTNKLWNA 642 (674)
Q Consensus 566 ~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~--~~~~~kl~n~ 642 (674)
|..|++++++||++++.+|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+. +++.++++|+
T Consensus 277 g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~ 356 (500)
T 2d5b_A 277 GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNL 356 (500)
T ss_dssp TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHH
T ss_pred CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999977999999999999999999999999999999998 56699999999999873 3466777887
Q ss_pred HHHH
Q 005849 643 GKFI 646 (674)
Q Consensus 643 ~~f~ 646 (674)
..++
T Consensus 357 ~~r~ 360 (500)
T 2d5b_A 357 VQRT 360 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=3.3e-65 Score=574.96 Aligned_cols=349 Identities=24% Similarity=0.340 Sum_probs=269.7
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHH
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~ 168 (674)
+++|+|+.|+|||||.|||||+++++++|+++||+||+||+|++++|||+||++++.+ +.++|++++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~----a~~~g~~~~--------- 70 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK----AEELGISPK--------- 70 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTH----HHHSSSCHH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHH----HHHcCCCHH---------
Confidence 4679999999999999999999999999999999999999999999999999996554 455687765
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCcccccchhhccC
Q 005849 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (674)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (674)
++++++.+.|++++++|||++| ..+.|+++.|.+.++++|++|+++|+||++.++++|||.|+|++++.|+..
T Consensus 71 ---~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-- 143 (497)
T 2csx_A 71 ---ELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE-- 143 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc--
Confidence 5678899999999999999776 456699999999999999999999999999999999999999998754410
Q ss_pred CCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCccee
Q 005849 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (674)
Q Consensus 249 ~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~ 328 (674)
T Consensus 144 -------------------------------------------------------------------------------- 143 (497)
T 2csx_A 144 -------------------------------------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCccc
Q 005849 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (674)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~ 408 (674)
.+.|+|||.+++
T Consensus 144 --------------------------------------------------------------------~~~c~~~~~~~~ 155 (497)
T 2csx_A 144 --------------------------------------------------------------------DHTCPIHQKKCE 155 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------CCCCCCCCCCCe
Confidence 035899999999
Q ss_pred ceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHh-cCCCceeec--cc-CCCcccceeeecCCcccEEEeC
Q 005849 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (674)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~iSR--q~-~WG~piP~~~~~~~~~~~~~~~ 484 (674)
.+.++|||++++++++++++.++++...+.|+..++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 156 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~--~----------- 222 (497)
T 2csx_A 156 YIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPF--D----------- 222 (497)
T ss_dssp --CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETT--E-----------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCC--C-----------
Confidence 9999999999999999999999887667789999999999995 799999999 66 69999994 1
Q ss_pred ChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhh
Q 005849 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (674)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~ 564 (674)
++++++|||||++.|.+.. +.+ .. ++||.|++++|+||+++|.....++..++
T Consensus 223 ---------------------~~~~i~vW~ds~~~~~s~~--~~~--~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~ 275 (497)
T 2csx_A 223 ---------------------PEHTIYVWFDALFNYISAL--EDK--VE--IYWPADLHLVGKDILRFHTVYWPAFLMSL 275 (497)
T ss_dssp ---------------------EEEEECSHHHHHTHHHHTT--TTT--HH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCceEEEecccchhhcccC--CCc--ch--hhCCceEEEeecchhHhHHHHHHHHHHHc
Confidence 1468999999998877655 211 11 66799999999999996554433332223
Q ss_pred cCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc-CCCCCccccCHHHHHHHH--HHHHHHHH
Q 005849 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANK--AFTNKLWN 641 (674)
Q Consensus 565 ~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~-~~~~~d~~fs~~~l~~~~--~~~~kl~n 641 (674)
|..|++++++||++++ +|+|||||+||+|+|.|++++||+|++|||+++ .++++|++|+++.+.+.. .++++++|
T Consensus 276 -g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n 353 (497)
T 2csx_A 276 -GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGN 353 (497)
T ss_dssp -TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHH
T ss_pred -CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 5568899999999995 999999999999999999999999999999998 556999999999998743 35566777
Q ss_pred HHHHHH
Q 005849 642 AGKFIL 647 (674)
Q Consensus 642 ~~~f~~ 647 (674)
++.++.
T Consensus 354 ~~~R~~ 359 (497)
T 2csx_A 354 LYSRVV 359 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-44 Score=397.89 Aligned_cols=325 Identities=20% Similarity=0.244 Sum_probs=241.8
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHH
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~ 170 (674)
++.+....|||+|.+||||+|+++++|+++||+|++||+|.++.|+|++|.++ ++.+.+.|.++.
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKI----i~~A~~~g~~~~----------- 89 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKI----IKRAGENKESPA----------- 89 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHH----HHHHHHTTSCHH-----------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHH----HHHHHHcCCCHH-----------
Confidence 44454456899999999999999999999999999999999999999999884 445566787754
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcccccchhhccCC
Q 005849 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYSEE 249 (674)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (674)
++++++.+.+++++++|||+.|+..+..| +|...++++|++|+++|++|++ ...|+||+.+-.
T Consensus 90 -e~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~------------ 153 (462)
T 3tqo_A 90 -ALAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK------------ 153 (462)
T ss_dssp -HHHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCT------------
T ss_pred -HHHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccccc------------
Confidence 77899999999999999999997664444 7999999999999999999999 789999987531
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.|..|.++... ++..|+.+-..
T Consensus 154 -----------------------------------------~yg~Ls~~~~~-----------------~~~~g~r~~~~ 175 (462)
T 3tqo_A 154 -----------------------------------------DYGKLSHRHLD-----------------ELQAGARVEVS 175 (462)
T ss_dssp -----------------------------------------TTTTTTTCSCC----------------------------
T ss_pred -----------------------------------------ccccccCCChH-----------------HhhccCccccc
Confidence 11111111100 00001000000
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i~~ 409 (674)
.--.++.||.++ +..+
T Consensus 176 ~~K~~p~DF~LW------------------------------------------------------------K~~k---- 191 (462)
T 3tqo_A 176 DSKRDPLDFVLW------------------------------------------------------------KKAK---- 191 (462)
T ss_dssp -CCSSTTCEEEE------------------------------------------------------------EECC----
T ss_pred cccCCcccccee------------------------------------------------------------eecC----
Confidence 000011111111 0000
Q ss_pred eeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChhHH
Q 005849 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (674)
Q Consensus 410 ~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (674)
. +-.-| ...||..-|-|+++|.
T Consensus 192 ----------------------~-------------------~ep~W----~spwG~GrPGWHiEcs------------- 213 (462)
T 3tqo_A 192 ----------------------P-------------------GEPKW----DSPWGEGRPGWHIECS------------- 213 (462)
T ss_dssp ----------------------T-------------------TSCCB----CCTTCSEEECHHHHHH-------------
T ss_pred ----------------------C-------------------CCCcc----cCCCCCCCCCCceehH-------------
Confidence 0 11124 3569999999999861
Q ss_pred HHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcCCcceeEEeehhhhhHHHHHHHHhhhhcCCCC
Q 005849 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 569 (674)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~P 569 (674)
.+....+| -+.|++.+|.|++|+|+.++++.+.+++++ |
T Consensus 214 ----------------------------am~~~~lG------------~~~dih~gG~Dl~FpHheneiaqs~a~~g~-p 252 (462)
T 3tqo_A 214 ----------------------------AMSSSILG------------QPFDIHGGGLDLKFPHHENEIAQSEAGEEK-P 252 (462)
T ss_dssp ----------------------------HHHHHHHC------------SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-C
T ss_pred ----------------------------HHHHHhcC------------CCeEEEccccccccHHHHhHHHHHHHHcCC-C
Confidence 01111111 156999999999999999999999999988 9
Q ss_pred cceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH--
Q 005849 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL-- 647 (674)
Q Consensus 570 f~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~f~~-- 647 (674)
|.++|+|+.+++.+|+|||||+||+|++.|++++||+|++|||+++++++++++|+.+.++++++.+++|||+++++.
T Consensus 253 ~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~ 332 (462)
T 3tqo_A 253 FVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVV 332 (462)
T ss_dssp CEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred cceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999988888999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred --------------hcCCCCCChhHHHHHHHhHH
Q 005849 648 --------------QNLPSQNDISRWEILLAYKV 667 (674)
Q Consensus 648 --------------~~~~~~~~~~~~~~L~~~~~ 667 (674)
..-+|||.+..+..|...-+
T Consensus 333 ~~~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~ 366 (462)
T 3tqo_A 333 NHEKTSSYTDRFYEAMDDDFNTPIAFALLFEMVR 366 (462)
T ss_dssp -----CHHHHHHHHHHTBTCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 12246777666666655443
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.7e-43 Score=390.41 Aligned_cols=303 Identities=18% Similarity=0.213 Sum_probs=201.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC---------CC-CCCCchhHHHHHHHHHHcCCCcc
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP---------GT-DHAGIATQLVVEKMLAAEGIKRV 159 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~---------G~-D~~Gl~~e~~ve~~~~~~g~~~~ 159 (674)
.+++++ +|+|+|.+||||+|+++++|+++||+||+||+|.|++ |+ |+||.+| ++.++++|+++.
T Consensus 43 v~~Yvc--gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI----~~~A~~~g~~~~ 116 (501)
T 3sp1_A 43 VKVYAC--GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKV----AKTAREKGLTVY 116 (501)
T ss_dssp EEEEEC--CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------------------CCHH
T ss_pred ceEEeC--CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHH----HHHHHHcCCCHH
Confidence 345554 4677799999999999999999999999999999995 44 6778774 445566787764
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEcccceeccCCCCccc
Q 005849 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (674)
Q Consensus 160 ~l~~e~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w~p~~~t~l 239 (674)
++++++.+.|++++++|||..||.. +.+++|...++++|++|+++|+||++...|+||+.+-
T Consensus 117 ------------e~a~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f--- 178 (501)
T 3sp1_A 117 ------------EISEFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF--- 178 (501)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC---
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc---
Confidence 6788999999999999999999743 5678999999999999999999999999999998641
Q ss_pred ccchhhccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeeccccc
Q 005849 240 SDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVD 319 (674)
Q Consensus 240 sd~Ev~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~ 319 (674)
+.|.+|.|+.+...+.
T Consensus 179 --------------------------------------------------~~yG~ls~~~~~~~~~-------------- 194 (501)
T 3sp1_A 179 --------------------------------------------------KSYGEMAGIDLIDKDM-------------- 194 (501)
T ss_dssp --------------------------------------------------TTTTTTTC----------------------
T ss_pred --------------------------------------------------CCccccCCCChhhhhc--------------
Confidence 0122222111100000
Q ss_pred ccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCccccccccccccc
Q 005849 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (674)
Q Consensus 320 ~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (674)
.|..+ + ... .+
T Consensus 195 --~g~r~--------------------~---------------------------------~~~----~K---------- 205 (501)
T 3sp1_A 195 --TLPRV--------------------D---------------------------------VDK----FK---------- 205 (501)
T ss_dssp --------------------------------------------------------------------CC----------
T ss_pred --cCCcc--------------------C---------------------------------ccc----cc----------
Confidence 00000 0 000 00
Q ss_pred ccCCCCcccceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCccc
Q 005849 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (674)
Q Consensus 400 ~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~ 479 (674)
..|.-+. -|.|...+. ....-| ...||...|-|+++|.
T Consensus 206 ----~~p~Df~-------------------------lWk~~p~~~------~~~~~W----~spwG~GrPGWhiEcs--- 243 (501)
T 3sp1_A 206 ----RNKTDFV-------------------------LWFTNSKFK------DQEMKW----DSPWGFGYPSWHLECA--- 243 (501)
T ss_dssp ----SSTTCEE-------------------------EEEECCC-----------CCB----CCTTCSEEECHHHHHH---
T ss_pred ----CCchhhH-------------------------hcCCCCCCC------CCCcee----cCCCCCCCCCchHHHH---
Confidence 0000000 011100000 000113 3469999998888650
Q ss_pred EEEeCChhHHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--CcceeEEeehhhhhHHHHH
Q 005849 480 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFWVARM 557 (674)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d~~~~G~Dii~~w~~~~ 557 (674)
....+++ +.|++.+|+|++|+|..+.
T Consensus 244 ----------------------------------------------------am~~~~lg~~~DIH~gG~DLifpHhene 271 (501)
T 3sp1_A 244 ----------------------------------------------------AMNLEYFKDALDIHLGGVDHIGVHHINE 271 (501)
T ss_dssp ----------------------------------------------------HHHHHHTTTCCCEEEEEGGGTTTHHHHH
T ss_pred ----------------------------------------------------HHHHHHcCCCceEEeeccccccchHHHH
Confidence 1122333 4599999999999999999
Q ss_pred HHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcCCCCCccccCHHHHHHHHHH
Q 005849 558 VMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (674)
Q Consensus 558 ~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~ 635 (674)
++++.++.++ ||.++|+| |++. .+|+|||||+||+|+|.|++++ ||+|++||||++.+++++++|+.+.++++++.
T Consensus 272 iAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 272 IAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA 349 (501)
T ss_dssp HHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHH
T ss_pred HHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHh
Confidence 9999998886 88999999 6776 7999999999999999999999 99999999999998899999999999999999
Q ss_pred ----HHHHHHHHHH
Q 005849 636 ----TNKLWNAGKF 645 (674)
Q Consensus 636 ----~~kl~n~~~f 645 (674)
+++|+|+++.
T Consensus 350 ~~~ll~rl~~~~~~ 363 (501)
T 3sp1_A 350 RENLINKLSYFYES 363 (501)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 9999999875
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.5e-40 Score=363.24 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=86.2
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhh-hChhHHHHHHhcC
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLG 616 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~-ygaD~lR~~l~~~ 616 (674)
|.|++++|+|++++|....++++.++.+..||.++++| |++. .+|+|||||+||+|+|.|++++ ||+|++||||++.
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~ 322 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSG 322 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHHHHHHHTS
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchheeEEEec
Confidence 89999999999999999999998888887788999999 6776 6999999999999999999999 9999999999997
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 005849 617 TAGQDLSLSIERLTANKAFTNKLWNAGKF 645 (674)
Q Consensus 617 ~~~~d~~fs~~~l~~~~~~~~kl~n~~~f 645 (674)
++++|++|+++.+.++.+.+++|+|++++
T Consensus 323 ~~~~d~~fs~~~l~~~~~~l~~l~n~~~~ 351 (414)
T 3c8z_A 323 HYREDRFWSNEVLDEANARLARWRSATAL 351 (414)
T ss_dssp CTTSCBCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999754
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=9e-39 Score=354.56 Aligned_cols=299 Identities=18% Similarity=0.193 Sum_probs=217.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
.+++++ .|+|+|++||||+|+++++|+++||+|++||+|.++.|+|++|.+ +.+.+++.|.++.
T Consensus 23 v~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~k----i~~~A~~~g~~~~---------- 86 (461)
T 1li5_A 23 VGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDK----IIKRANENGESFV---------- 86 (461)
T ss_dssp EEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHH----HHHHHHHTTCCHH----------
T ss_pred eeEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHH----HHHHHHHcCCCHH----------
Confidence 345555 467779999999999999999999999999999999999999966 4455677888765
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-CCCCccccCChhHHHHHHHHHHHHHHcCceEEc-ccceeccCCCCcccccchhhcc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYS 247 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~w~p~~~t~lsd~Ev~~~ 247 (674)
++++++.+.+++++++|||.+ |+.. .|+ +|...+++++++|.++|++|++ ...|+||..+- -.|+
T Consensus 87 --~~~~~~~~~f~~~~~~LgI~~~d~~~--r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~-------~~yg 153 (461)
T 1li5_A 87 --AMVDRMIAEMHKDFDALNILRPDMEP--RAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-------PTYG 153 (461)
T ss_dssp --HHHHHHHHHHHHHHHHTTCCCCSBCC--BGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-------TTTT
T ss_pred --HHHHHHHHHHHHHHHHcCCCCCcccc--ccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-------cccc
Confidence 667889999999999999998 5321 132 4889999999999999999999 89999986531 0011
Q ss_pred CCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcce
Q 005849 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (674)
Q Consensus 248 ~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v 327 (674)
++.|+.+ .++..|+.+
T Consensus 154 ----------------------------------------------~lsg~~~-----------------~~l~~g~rv- 169 (461)
T 1li5_A 154 ----------------------------------------------VLSRQDL-----------------DQLQAGARV- 169 (461)
T ss_dssp ----------------------------------------------TTTTC-----------------------------
T ss_pred ----------------------------------------------cccCCCH-----------------HHhhcCCcc-
Confidence 1111000 000000000
Q ss_pred eeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCCHHHHHHHHHHHHHHcCCcccccccccccccccCCCCcc
Q 005849 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (674)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~i 407 (674)
.... ..+.|.
T Consensus 170 -------------------------------------------------------------~~~~---------~k~~p~ 179 (461)
T 1li5_A 170 -------------------------------------------------------------DVVD---------DKRNPM 179 (461)
T ss_dssp ---------------------------------------------------------------------------CCSTT
T ss_pred -------------------------------------------------------------cchh---------cccCcc
Confidence 0000 000010
Q ss_pred cceeeccccccchHHHHHHHHHHHhCCceEechhHHHHHHHHHhcCCCceeecccCCCcccceeeecCCcccEEEeCChh
Q 005849 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (674)
Q Consensus 408 ~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (674)
.+.+ |.+ .++-.+++...||.+.|.|+.++.
T Consensus 180 Df~l-------------------------wk~-------------~~~g~~~w~s~WG~g~PgWhiecs----------- 210 (461)
T 1li5_A 180 DFVL-------------------------WKM-------------SKEGEPSWPSPWGAGRPGWHIECS----------- 210 (461)
T ss_dssp CEEE-------------------------EEE-------------CCTTSCCBCCTTCSEEECSSHHHH-----------
T ss_pred ceEE-------------------------Ecc-------------CCCCCCcccCCCCCcCCCccchhH-----------
Confidence 0000 000 000112345679999998887540
Q ss_pred HHHHHHhhhcCCCcceEecCCeeeeeccCCccchhccCCCCCChhhhhhcC--CcceeEEeehhhhhHHHHHHHHhhhhc
Q 005849 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--PTTMLETGHDILFFWVARMVMMGIEFT 565 (674)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~f~~~~--P~d~~~~G~Dii~~w~~~~~~~~~~~~ 565 (674)
....+++ |.|++++|+|++|+|....++++.++.
T Consensus 211 --------------------------------------------am~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~ 246 (461)
T 1li5_A 211 --------------------------------------------AMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAH 246 (461)
T ss_dssp --------------------------------------------HHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHS
T ss_pred --------------------------------------------HHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhc
Confidence 0111222 679999999999999999999888877
Q ss_pred CCCCcceeEee-eeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 005849 566 GSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGK 644 (674)
Q Consensus 566 ~~~Pf~~v~~h-g~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~n~~~ 644 (674)
|. ||.++|+| |++. .+|+|||||+||+|+|.|++++||+|++|||+++.+++++++||++.+.++.+.+++++|+++
T Consensus 247 g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~ 324 (461)
T 1li5_A 247 DG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALR 324 (461)
T ss_dssp SS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 77888887 7887 589999999999999999999999999999999987799999999999999999999999987
Q ss_pred HH
Q 005849 645 FI 646 (674)
Q Consensus 645 f~ 646 (674)
++
T Consensus 325 ~~ 326 (461)
T 1li5_A 325 GT 326 (461)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 20
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=2.4e-35 Score=277.32 Aligned_cols=140 Identities=45% Similarity=0.790 Sum_probs=133.0
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCchhhhccCcEEecCCCCCceeeeeecccccccCCCcceee
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~y~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~ 329 (674)
.++++|++|++ +.+.+++|||||||||+||+||+|||++++|++|+|+++.||++ ++++||+.++||++++|||+||+
T Consensus 3 ~~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~-~~~ipI~~~~~V~~~~GTG~V~~ 80 (147)
T 1wka_A 3 PGKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKV 80 (147)
T ss_dssp -CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEE
T ss_pred cceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCC-CCeeEEEEeCccccCCCCCcEEE
Confidence 57899999999 66789999999999999999999999999999999999999995 79999999999999999999999
Q ss_pred CCCCChhhHHHHHHhCCCeeeeccCCCcccccccc----cCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~----~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
||+||++||++++++|||+++++|++|++ ++|. |+|++++|||+.|+++|+++|++.+.+++
T Consensus 81 ~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 81 TPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 99999999999999999999999999999 6776 99999999999999999999999887654
No 21
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=3.2e-33 Score=273.54 Aligned_cols=145 Identities=31% Similarity=0.448 Sum_probs=131.3
Q ss_pred CCeeEEEEEeecCC------CceEEEeecCCCcccCCceEEeCCC---------Cchh----------------------
Q 005849 250 PGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ---------DEHY---------------------- 292 (674)
Q Consensus 250 ~~~~~~~kf~~~~~------~~~l~v~Tt~Petl~~~~av~v~p~---------~~~y---------------------- 292 (674)
.++++||+|++.+. +.+++|||||||||+||+||+|||+ +++|
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 81 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFP 81 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEE
Confidence 46789999999874 6899999999999999999999999 4555
Q ss_pred -hhccCcEEecCCCC--CceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeeccCCCcccccccccCCCC
Q 005849 293 -SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (674)
Q Consensus 293 -~~l~G~~~~~P~~~--~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~ 369 (674)
.+|+|..+.||+.. ++.+||+.++||++++|||+||+||+||++||+++++||||+++++|++|.++++ | |.|+.
T Consensus 82 G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~ 159 (186)
T 1wny_A 82 GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLY 159 (186)
T ss_dssp HHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCB
T ss_pred cccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcC
Confidence 45899999999953 7999999999999999999999999999999999999999999999999999987 7 99999
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccc
Q 005849 370 RFEARKKLWSDLEETGLAVKKEPHTLR 396 (674)
Q Consensus 370 ~~~ar~~i~~~L~~~g~~~~~~~~~~~ 396 (674)
++||++.|++.|+++|.+++.+++.|+
T Consensus 160 v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 160 FREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999998874
No 22
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.96 E-value=6e-30 Score=252.36 Aligned_cols=139 Identities=34% Similarity=0.521 Sum_probs=123.6
Q ss_pred CCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCch-------------hh--------------------hcc
Q 005849 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH-------------YS--------------------QFI 296 (674)
Q Consensus 250 ~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~-------------y~--------------------~l~ 296 (674)
-++.++|+|++.+.+.+|+|||||||||+|+++|+|||++++ |. .|+
T Consensus 9 ~~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~ 88 (196)
T 2ajg_A 9 MGEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 88 (196)
T ss_dssp --CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEE
T ss_pred cCceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEc
Confidence 367899999998878899999999999999999999999862 11 167
Q ss_pred CcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeeecc---------CCCccccc-----c
Q 005849 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMN---------KDGTLNEV-----A 362 (674)
Q Consensus 297 G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~---------~~G~~~e~-----~ 362 (674)
|.++.||++ ++.+||+.++||++++|||+||+||+||++||++++++|||++++++ ++|.+++. +
T Consensus 89 G~~~~~P~~-~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns 167 (196)
T 2ajg_A 89 GFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 167 (196)
T ss_dssp EEEEECTTT-CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSS
T ss_pred CCEEECCCC-CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecC
Confidence 999999995 79999999999999999999999999999999999999999999996 35666553 4
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCccc
Q 005849 363 GLFRGLDRFEARKKLWSDLEETGLAVK 389 (674)
Q Consensus 363 g~~~g~~~~~ar~~i~~~L~~~g~~~~ 389 (674)
|.|+|+.++||++.|++.|+++|++.+
T Consensus 168 ~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 168 GEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred cccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 789999999999999999999998765
No 23
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=1.1e-28 Score=246.42 Aligned_cols=140 Identities=32% Similarity=0.540 Sum_probs=120.0
Q ss_pred eEEEEEeecCCC---------------------ceEEEeecCCCcccCCceEEeCCCCchhh------------------
Q 005849 253 LYYIKYRVAGRS---------------------DFLTIATTRPETLFGDVALAVNPQDEHYS------------------ 293 (674)
Q Consensus 253 ~~~~kf~~~~~~---------------------~~l~v~Tt~Petl~~~~av~v~p~~~~y~------------------ 293 (674)
-..|+|++.+.+ .+++|||||||||+||++|+|||++++..
T Consensus 5 G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~ 84 (219)
T 3o0a_A 5 GALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVE 84 (219)
T ss_dssp CEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHH
T ss_pred EEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHH
Confidence 356788887644 68999999999999999999999986310
Q ss_pred ----------------------hccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHHhCCCeeee
Q 005849 294 ----------------------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV 351 (674)
Q Consensus 294 ----------------------~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~ 351 (674)
.|.|.++.||++ ++.+||+.++||++++|||+||+||+||++||+++++||||++++
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl~-~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~v 163 (219)
T 3o0a_A 85 NFVEKMKKMSTRERTMEEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVV 163 (219)
T ss_dssp HHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTTT-CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHhhccccceeEEEeeeEEcCCEEECCCC-CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceee
Confidence 145788999995 899999999999999999999999999999999999999999999
Q ss_pred ccC-------CCcccc-----cccccCCCCHHHHHHHHHHHHHHcCCccccccc
Q 005849 352 MNK-------DGTLNE-----VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (674)
Q Consensus 352 ~~~-------~G~~~e-----~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~ 393 (674)
+|. +|.+++ +++.|.|+.++||++.|++.|+++|++.+..+|
T Consensus 164 i~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 164 VKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp EECSSCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEEEC---
T ss_pred eCCccccccccccccccceEecCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeee
Confidence 986 344443 468999999999999999999999999887655
No 24
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.94 E-value=1.4e-27 Score=244.91 Aligned_cols=135 Identities=25% Similarity=0.405 Sum_probs=115.6
Q ss_pred CCceEEEeecCCCcccCCceEEeCCCCc----------------h------------------------hhhccCcEEec
Q 005849 263 RSDFLTIATTRPETLFGDVALAVNPQDE----------------H------------------------YSQFIGMMAIV 302 (674)
Q Consensus 263 ~~~~l~v~Tt~Petl~~~~av~v~p~~~----------------~------------------------y~~l~G~~~~~ 302 (674)
.+.+|+|||||||||+|+++|+|||+.+ + +.+|+|..+.|
T Consensus 31 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~ 110 (261)
T 2wfg_A 31 NKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDA 110 (261)
T ss_dssp SEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEEC
T ss_pred CCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEEC
Confidence 3578999999999999999999999943 1 22489999999
Q ss_pred CCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH-------hC-------CCeeeeccC--CCcccc------
Q 005849 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG-------LPILNVMNK--DGTLNE------ 360 (674)
Q Consensus 303 P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~-------~~-------l~~~~~~~~--~G~~~e------ 360 (674)
|++.++.+||++++||++++|||+||+||+||++||+++++ || ||++++++. +|.+.+
T Consensus 111 Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~ 190 (261)
T 2wfg_A 111 PYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVND 190 (261)
T ss_dssp TTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHH
T ss_pred CCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhcc
Confidence 99756899999999999999999999999999999999999 99 899999987 444321
Q ss_pred -----------------------------cccccCCCCHHHHHHHHHHHHHHcCCccccccccccc
Q 005849 361 -----------------------------VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (674)
Q Consensus 361 -----------------------------~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~~~~~~~~ 397 (674)
++|.|.|+.++||++.|++.|+++|.+.+...+.|+-
T Consensus 191 ~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 191 LKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEH 256 (261)
T ss_dssp TTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-----
T ss_pred ccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecc
Confidence 1688999999999999999999999999988887753
No 25
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.94 E-value=2.3e-26 Score=254.08 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=109.7
Q ss_pred HHHHHHhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHH
Q 005849 71 IYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150 (674)
Q Consensus 71 ~~~~W~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~ 150 (674)
+.+.=+++..|+.... ++++++|...+|||||+|||||+|+.+++|+++|++++.||+|+...-..+.|..+...+.-.
T Consensus 12 l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~ 90 (464)
T 3fnr_A 12 ANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSI 90 (464)
T ss_dssp HHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHH
Confidence 3333345566887655 678899999999999999999999999999999999999999999999999997764433211
Q ss_pred ----HH-HcCCC---ccc---------cCHHHH------------HHHHHHHH-HHHHHHHHHHHHHhccccC-CCCccc
Q 005849 151 ----LA-AEGIK---RVE---------LSRDEF------------TKRVWEWK-EKYGGTITSQIKRLGASCD-WTRERF 199 (674)
Q Consensus 151 ----~~-~~g~~---~~~---------l~~e~f------------~~~~~~~~-~~~~~~~~~~l~~lgi~~D-w~~~~~ 199 (674)
.. ..|.+ |++ ++++-+ .+.+|+++ +...+.+++++++|||.+| |..|-.
T Consensus 91 ~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess 170 (464)
T 3fnr_A 91 LLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS 170 (464)
T ss_dssp HHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG
T ss_pred HHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH
Confidence 11 12322 221 111111 22466664 4456779999999999999 544422
Q ss_pred cCChhHHHHHHHHHHHHHHcCceEEcccce
Q 005849 200 TLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 200 T~~~~~~~~v~~~f~~L~~kGliy~~~~~v 229 (674)
. |. .+..++++|.++|++|+....+
T Consensus 171 ~----~~-~~~~vv~~L~~~g~~~e~dGa~ 195 (464)
T 3fnr_A 171 Y----YD-ALNATLESLKEHKGIYEQEGKI 195 (464)
T ss_dssp G----ST-THHHHHHHHHHTTCEEEETTEE
T ss_pred H----HH-HHHHHHHHHHHCCCEEEeCCeE
Confidence 2 22 7899999999999999976654
No 26
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.94 E-value=1.1e-27 Score=270.40 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=93.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--chhHHHHHHHHHHc--CCCccccCHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--IATQLVVEKMLAAE--GIKRVELSRDE 165 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G--l~~e~~ve~~~~~~--g~~~~~l~~e~ 165 (674)
+.|++.++ |+|||.|||||+|+++++|+++||++++|++|.++.++|++| -.+... ...+.++ |+++.++.+.
T Consensus 20 ~~yv~~tg-PsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~-~~~a~~~~~G~~~~~~p~p- 96 (523)
T 1irx_A 20 EKYVVESG-ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRN-VPQEWKDYLGMPISEVPDP- 96 (523)
T ss_dssp SEEEEEEE-ECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSS-SCGGGGGGTTSBGGGSCCT-
T ss_pred CeEEECCC-CCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhH-HHHHHHHHcCCCcccCCcc-
Confidence 34666555 999999999999999999999999999999999999999999 222000 0011223 6665433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccCChhHHH-HHHHHHHHHHHcC-ceEE
Q 005849 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSR-AVVEAFIRLHEKG-LIYQ 224 (674)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~-~v~~~f~~L~~kG-liy~ 224 (674)
| ..|+++++++.+.|+++|++|||.+|+ |.+++. |.. .+++++.+|.++| .||.
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 1 135578899999999999999998773 223222 666 8899999999999 6663
No 27
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=230.11 Aligned_cols=126 Identities=25% Similarity=0.396 Sum_probs=107.9
Q ss_pred CCceEEEeecCCCcccCCceEEeCCCCch----------------------hhh------------------ccCcEEec
Q 005849 263 RSDFLTIATTRPETLFGDVALAVNPQDEH----------------------YSQ------------------FIGMMAIV 302 (674)
Q Consensus 263 ~~~~l~v~Tt~Petl~~~~av~v~p~~~~----------------------y~~------------------l~G~~~~~ 302 (674)
.+.+|+|||||||||+|+++|+|||++++ |.+ |+|.++.|
T Consensus 28 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~ 107 (252)
T 2wfd_A 28 KNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSA 107 (252)
T ss_dssp SCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEEC
T ss_pred CCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEEc
Confidence 46899999999999999999999999731 222 88999999
Q ss_pred CCCCCceeeeeecccccccCCCcceeeCCCCChhhHHH----------HHHhCCC--------eeeeccC----------
Q 005849 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK---------- 354 (674)
Q Consensus 303 P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~---------- 354 (674)
|++..+.+||++++||++++|||+||+||+||++||++ +++|||| ++.+++.
T Consensus 108 Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~ 187 (252)
T 2wfd_A 108 PLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT 187 (252)
T ss_dssp SSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHH
T ss_pred CCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhh
Confidence 99633689999999999999999999999999999994 7889988 4555432
Q ss_pred -----------------------------CCcccccccccCCCCHHHHHHHHHHHHHHcCCcccc
Q 005849 355 -----------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKK 390 (674)
Q Consensus 355 -----------------------------~G~~~e~~g~~~g~~~~~ar~~i~~~L~~~g~~~~~ 390 (674)
+|.|+ +|.|+|+.+++|++.|+++|+++|.+.+.
T Consensus 188 ~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 188 ICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 36665 68899999999999999999999987653
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.92 E-value=2.6e-25 Score=255.04 Aligned_cols=146 Identities=21% Similarity=0.117 Sum_probs=105.7
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHH------
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEK------ 149 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~------ 149 (674)
++...|+......+++.+|....|||||++||||+|+.+++|+++|++++.||+|.+....+++|..+...+.-
T Consensus 105 ~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~ 184 (629)
T 2zue_A 105 AKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKE 184 (629)
T ss_dssp HHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHH
T ss_pred hcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCC
Confidence 44567887654556789999999999999999999999999999999999999999999999998764322210
Q ss_pred -----------------------------HHHHcCCCc--cccCHHHHHH-----HH-HHHHHHHHHHHHHHHHHhcccc
Q 005849 150 -----------------------------MLAAEGIKR--VELSRDEFTK-----RV-WEWKEKYGGTITSQIKRLGASC 192 (674)
Q Consensus 150 -----------------------------~~~~~g~~~--~~l~~e~f~~-----~~-~~~~~~~~~~~~~~l~~lgi~~ 192 (674)
.+++.+.++ .+.+++.+.+ .. +++++.+.+.+++++++|||.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~ 264 (629)
T 2zue_A 185 EFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKY 264 (629)
T ss_dssp HHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 000001111 0001111110 01 4567888889999999999999
Q ss_pred C-CCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 193 D-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 193 D-w~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
| |.+ +.+..+...++.++++|.++|++|+
T Consensus 265 D~~~~---es~~~~~~~v~~vi~~L~~kG~~y~ 294 (629)
T 2zue_A 265 DLLVW---ESDIVRRKLFEIALELLSKNENFYI 294 (629)
T ss_dssp SEEEE---HHHHHHTTHHHHHHHHHHTSTTEEC
T ss_pred ccccC---cCccccchhHHHHHHHHHHCCCccc
Confidence 8 433 4444447889999999999999993
No 29
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.91 E-value=3.4e-25 Score=226.63 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=126.7
Q ss_pred cCCCCcccccchh--hccCCCCeeEEEEEeecCCCceEEEeecCCCcccCCceEEeCCCCch------------------
Q 005849 232 SPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH------------------ 291 (674)
Q Consensus 232 ~p~~~t~lsd~Ev--~~~~~~~~~~~~kf~~~~~~~~l~v~Tt~Petl~~~~av~v~p~~~~------------------ 291 (674)
..+++|+||+-|- .|+++.++++ .+.+.+.+.+++|||||||||+||+||||||+.++
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~ 124 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAA 124 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHH
Confidence 4577889998766 4666666666 45677788999999999999999999999999421
Q ss_pred ----h--------------------hhccCcEEecCCCCCceeeeeecccccccCCCcceeeCCCCChhhHHHHHH----
Q 005849 292 ----Y--------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK---- 343 (674)
Q Consensus 292 ----y--------------------~~l~G~~~~~P~~~~~~vpii~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~---- 343 (674)
| ++|+|..+.||++..+.+||++++||++++|||+||+||+||++||+++++
T Consensus 125 e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~ 204 (311)
T 3pz6_A 125 VNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILEN 204 (311)
T ss_dssp HHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTT
T ss_pred HHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhc
Confidence 1 137799999999643489999999999999999999999999999997666
Q ss_pred -------hCC---------CeeeeccC---------------------------------------CCcccccccccCCC
Q 005849 344 -------LGL---------PILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (674)
Q Consensus 344 -------~~l---------~~~~~~~~---------------------------------------~G~~~e~~g~~~g~ 368 (674)
||| +++.+++. +|.|. +|.|+|+
T Consensus 205 k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~ 282 (311)
T 3pz6_A 205 RNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQ 282 (311)
T ss_dssp GGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTS
T ss_pred cHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCe
Confidence 664 55555542 23333 6899999
Q ss_pred CHHHHHHHHHHHHHHcCCccccc
Q 005849 369 DRFEARKKLWSDLEETGLAVKKE 391 (674)
Q Consensus 369 ~~~~ar~~i~~~L~~~g~~~~~~ 391 (674)
++.+||++|.++|.++|..+...
T Consensus 283 ~V~eAk~~i~~~L~~~g~a~~yy 305 (311)
T 3pz6_A 283 SVKDCKQSCRDLLVQNNQCIVYS 305 (311)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EHHHHHHHHHHHHHHCCCceEEc
Confidence 99999999999999999988743
No 30
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.91 E-value=3.2e-24 Score=245.07 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=93.7
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCcc-----------
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV----------- 159 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~----------- 159 (674)
+.+|....|||||++||||+|+.+++|+++||+|+.||+|.++.-+++.|..+...+. ...+.|.+..
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~-~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLF-ALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHH-HHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHH-HHHHhCCcccCCCCcchhHHH
Confidence 6899999999999999999999999999999999999999998766666644321111 0111222100
Q ss_pred ------------cc---CHHHHHHH----HHHHHHHHHHHHHHHHHHhccccC-CCCccccCChhHHHHHHHHHHHHHHc
Q 005849 160 ------------EL---SRDEFTKR----VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEK 219 (674)
Q Consensus 160 ------------~l---~~e~f~~~----~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~k 219 (674)
++ +++-+.+. +.++++.+.+.+++++++|||.+| |.+ |.+..+...+++++++|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~---es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVW---ESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEE---HHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEecc---CCcccccchHHHHHHHHHHC
Confidence 00 00000000 156788889999999999999998 533 44444578899999999999
Q ss_pred CceEE
Q 005849 220 GLIYQ 224 (674)
Q Consensus 220 Gliy~ 224 (674)
|++|+
T Consensus 260 G~~y~ 264 (592)
T 1iq0_A 260 PHVFR 264 (592)
T ss_dssp TTEEC
T ss_pred CCccc
Confidence 99995
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.80 E-value=4.4e-19 Score=202.11 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=107.5
Q ss_pred HhCCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcC
Q 005849 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG 155 (674)
Q Consensus 76 ~~~~~f~~~~~~~~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g 155 (674)
+....|+......+++++|....|||+|++||||+|+.+++|+++|+++..||+|.+.....++|..+...+.- ..+.|
T Consensus 129 ~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g 207 (607)
T 1f7u_A 129 TRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYG 207 (607)
T ss_dssp HHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHC
T ss_pred hhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhC
Confidence 45567887654456789999999999999999999999999999999999999999999999988765332211 01111
Q ss_pred C----------------------------------CccccCH----------HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005849 156 I----------------------------------KRVELSR----------DEFTKRVWEWKEKYGGTITSQIKRLGAS 191 (674)
Q Consensus 156 ~----------------------------------~~~~l~~----------e~f~~~~~~~~~~~~~~~~~~l~~lgi~ 191 (674)
. ...+.++ ++..+..+++++...+.+++++++|||.
T Consensus 208 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~ 287 (607)
T 1f7u_A 208 NEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIK 287 (607)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 0 0001111 1222223355777888899999999999
Q ss_pred cC-CCCccccCChhHH-HHHHHHHHHHHHcCceEEcccce
Q 005849 192 CD-WTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQGSYMV 229 (674)
Q Consensus 192 ~D-w~~~~~T~~~~~~-~~v~~~f~~L~~kGliy~~~~~v 229 (674)
+| |.++- .|. ..+..++++|.++|++|+....+
T Consensus 288 fD~~~~ES-----~~~~~~~~~vi~~L~~kG~~ye~dGa~ 322 (607)
T 1f7u_A 288 YDVYSGES-----QVSKESMLKAIDLFKEKGLTHEDKGAV 322 (607)
T ss_dssp CSEEEEGG-----GCCHHHHHHHHHHHHHTTCEEEETTEE
T ss_pred ceeecCcc-----hhhhhHHHHHHHHHHhCCCEEEECCcE
Confidence 98 54431 233 57899999999999999977655
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.45 E-value=7.8e-13 Score=147.04 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=70.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|.+.++.-+|+.--+ ++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---------------R~------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---------------RV------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---------------GC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 55667799999999999999998666665 5666666666654311 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| .. +...+|.....+...+|.++|++|.
T Consensus 144 -~~e~~~~I~edL~wLGl~wd--~~--~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 -DPEAYDMIPADLEWLGVEWD--ET--VIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp -CTTHHHHHHHHHHHHTCCCS--EE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--CC--cccccCHHHHHHHHHHHHHcCCcee
Confidence 13577789999999997554 33 4455688889999999999999997
No 33
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.27 E-value=1.3e-10 Score=128.77 Aligned_cols=100 Identities=24% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
-.++++-.+|+|||+|||||+|+.++.|.+||. ..|.-|+.+--+|.. +
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~~------------------r----------- 59 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDLE------------------R----------- 59 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSCC------------------S-----------
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCcc------------------c-----------
Confidence 357778888999999999999999999999997 678777665433311 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC-------CccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWT-------RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~-------~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
....+.+.|.++|+.||+..|=. -+|. ..++....+++.++|.++|.+|..
T Consensus 60 ---~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~c 117 (481)
T 2o5r_A 60 ---SEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYYV 117 (481)
T ss_dssp ---GGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ---cHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeEe
Confidence 11345667889999999865410 0122 345667788999999999999853
No 34
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.27 E-value=5.6e-11 Score=131.94 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=64.6
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 005849 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (674)
Q Consensus 95 ~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~ 174 (674)
+-.+|.|||.|||||+++.++...+|| ++.+.|+.=+|+.-.+ +. .
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~~---------------R~--------------~ 49 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDRE---------------RS--------------R 49 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSSS---------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCcc---------------cc--------------c
Confidence 445699999999999999999655555 4445554444443210 11 1
Q ss_pred HHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 175 ~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.++.+.|.++|+.||+ +|+... ..-.++....+++..+|.++|++|.
T Consensus 50 ~~~~~~i~~dL~wLGl--~wde~~-~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 50 PEYTENILEGLQWLGL--TWDEGP-YFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHHHTTC--CCSEEE-EEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHcCC--CCCCCC-ccccCCHHHHHHHHHHHHHCCCceE
Confidence 4567789999999997 454421 2234566778899999999999996
No 35
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.24 E-value=2.9e-10 Score=126.54 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=66.8
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|...++.-+|+.--. .
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-----------------R------------ 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-----------------K------------ 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-----------------G------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-----------------h------------
Confidence 45566699999999999999999888877 3444444444443211 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
.+.++.+.|.++|+.||+..|- .. +...+|.....+...+|.++|++|.
T Consensus 73 ~~~e~~~~I~edL~wLGl~wde-~~--~~qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 EDIEYVESIKNDVEWLGFHWSG-NV--RYSSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSS-SC--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCCCC-CC--eehcccHHHHHHHHHHHHHCCCcee
Confidence 1146778899999999986552 22 3344566666777789999999997
No 36
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.19 E-value=7.4e-10 Score=128.38 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=69.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.||||||++.++...+|| +|.+.|+.-+|+.--. +.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---------------R~------------- 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---------------LA------------- 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---------------TC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 45555699999999999999999777776 4455555555543211 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEE
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 224 (674)
..++.+.|.++|+.||+..| +.. +...+|.....+...+|.++|++|.
T Consensus 114 -~~e~~~~IledL~wLGl~wd-e~~--~~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 -RQEYVDSIADDLKWLGLDWG-EHF--YYASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp -CHHHHHHHHHHHHHHTCCCT-TCE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC-CCc--ccHhhhHHHHHHHHHHHHHCCCcEe
Confidence 14677889999999997554 222 3345678889999999999999997
No 37
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.04 E-value=2.4e-09 Score=118.20 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=66.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+|.. +.
T Consensus 3 ~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD~~------------------R~-------------- 48 (468)
T 1j09_A 3 VTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVRIEDTDRA------------------RY-------------- 48 (468)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCCTT------------------SC--------------
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCCc------------------cc--------------
Confidence 3445699999999999999999888888 3345433333333221 11
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcc------c-cCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRER------F-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~------~-T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+. |+... - +...++....++...+|.++|++|..
T Consensus 49 ~~~~~~~I~~dl~wlGl~--wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 49 VPGAEERILAALKWLGLS--YDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp CTTHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred ChHHHHHHHHHHHHcCCC--CCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc
Confidence 134667899999999975 54431 0 23445677889999999999999975
No 38
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.03 E-value=6.1e-09 Score=118.01 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHH
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~ 169 (674)
+++.+-++ |+|||+|||||+|+.++.+.+||. ..|.-++.+=-+|.. +
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~~------------------r----------- 175 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE------------------R----------- 175 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCSS------------------S-----------
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcChh------------------h-----------
Confidence 45666666 999999999999999999999995 466555555333310 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 170 VWEWKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+.+| .. |+ -.++....++++.+|.++|++|..
T Consensus 176 ---~~~~~~~~I~~dL~wlGl~~D--~~~~~gG~~gp~~--qSer~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 176 ---SSREYEQQILESLRWCGLDWD--EGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCB--STTCHHHHHHHHHHHHHTTTEEEE
T ss_pred ---ccHHHHHHHHHHHHHcCCCCC--CCCCcCCCCCCee--eeCCHHHHHHHHHHHHHcCCceEe
Confidence 014567789999999998654 42 33 233457889999999999999986
No 39
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.01 E-value=8.2e-09 Score=114.43 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=68.4
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+|.. +
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD~~------------------R-------------- 52 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTDAQ------------------R-------------- 52 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCCTT------------------T--------------
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCCc------------------c--------------
Confidence 34455699999999999999999999998 4456444443333221 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCC---------ccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+..| . .|+ ..++....++...+|.++|++|..
T Consensus 53 ~~~~~~~~I~~~L~wlGl~wD--egp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 53 DSEESYLALLDALRWLGLDWD--EGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp CCHHHHHHHHHHHHHHTCCCS--BBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cChHHHHHHHHHHHHcCCCcC--CCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEEe
Confidence 114567789999999997544 4 233 445667889999999999999975
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.94 E-value=1.9e-08 Score=111.47 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=67.6
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 005849 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (674)
Q Consensus 93 ~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~ 172 (674)
+++-.+|.|||.|||||+++.++.-.+||- ..|.-++.+=-+|.. +
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R-------------- 71 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDTE------------------R-------------- 71 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCTT------------------T--------------
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEeeCCcc------------------c--------------
Confidence 445556999999999999999998888873 455444443333321 1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc---------cccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 173 WKEKYGGTITSQIKRLGASCDWTRE---------RFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
...++.+.|.++|+.||+. |+.. |+ -.++....++...+|.++|++|..
T Consensus 72 ~~~~~~~~I~~dL~wlGl~--wDe~~~~gG~~gp~~--QSer~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 72 SSREYEQQILESLRWCGLD--WDEGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CCHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHcCCC--CCcCCCCCCCCCCee--eeCCHHHHHHHHHHHHHcCCeEec
Confidence 1145677899999999985 4442 33 334557889999999999999986
No 41
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.89 E-value=4.7e-08 Score=107.87 Aligned_cols=95 Identities=24% Similarity=0.276 Sum_probs=68.6
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++...+||. ..|.-++.+--+|.. + .
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~~------------------R--------------~ 72 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDVE------------------R--------------S 72 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCGG------------------G--------------C
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCcc------------------c--------------c
Confidence 44555999999999999999998888884 355555544444321 0 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+. |+.. .+...++....++++.+|.++|++|..
T Consensus 73 ~~~~~~~i~~dl~wlGl~--~d~~-~~~qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 73 SQEAVDAILEGMAWLGLD--YDEG-PYYQMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CHHHHHHHHHHHHHTTCC--CSEE-EEEGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHcCCC--CCCC-CcccccCHHHHHHHHHHHHHCCCEEeC
Confidence 145777899999999985 4442 123445777889999999999999976
No 42
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.46 E-value=7.9e-06 Score=91.40 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=66.7
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
.+-.+|.|||.||||||++.++.-.+|| ...|.-++. +|+. ++.. .
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLR---ieDt-----------------D~~R------------~ 71 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLR---IEDT-----------------DQSR------------Y 71 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCC-----------------CTTS------------C
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcC-----------------CCCc------------C
Confidence 3455699999999999999999999988 345543333 2332 2211 1
Q ss_pred HHHHHHHHHHHHHHhccccCCCC----ccc-cCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR----ERF-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~----~~~-T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..|-.. +|. ....++....++...+|.++|++|..
T Consensus 72 ~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 72 SPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 14567789999999998665211 111 12334566778899999999999975
No 43
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.36 E-value=2.4e-07 Score=96.49 Aligned_cols=94 Identities=28% Similarity=0.347 Sum_probs=66.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~ 173 (674)
++-.+|.|||.|||||+++.++.. ...+++.+.|+.-+|+.-.+ + +
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~-----l~Ar~~~g~~ilRieDtD~~---------------R-~------------- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSY-----LQARARQGRWLVRIEDIDPP---------------R-E------------- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHH-----HHHHHTTCEEEEEECCSCGG---------------G-S-------------
T ss_pred EEEECcCCCCCccHHHHHHHHHHH-----HHHHhcCCeEEEEEecCCch---------------h-h-------------
Confidence 445569999999999999999644 44445566666555553211 0 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCC-ccccCChhHHHHHHHHHHHHHHcCceEEc
Q 005849 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (674)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 225 (674)
..++.+.|.++|+.||+..| . .++ -.++....++++++|.++|++|..
T Consensus 53 ~~~~~~~I~~dL~~LGl~~D--~~~~~--qSer~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 53 VPGAAETILRQLEHYGLHWD--GDVLW--QSQRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp CTTHHHHHHHHHHHTTCCCS--SCCEE--GGGCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCC--CCCee--eeCCHHHHHHHHHHHHHcCCcccC
Confidence 13467789999999998655 3 222 234667889999999999999974
No 44
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.36 E-value=0.00028 Score=74.26 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=53.1
Q ss_pred cCCcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhcC
Q 005849 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (674)
Q Consensus 537 ~~P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~~ 616 (674)
.+.+|+.+.|.||...... ..-+.-.++...| .++.+.++.+++|+|||||.||+|++.| .+|.+|-.+.+.
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l-~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHML-ARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHH-HHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred hcCCCEEEechhhHHHHHH-HHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 3578999999999763211 1112222333445 3667888889999999999999999987 499999988875
Q ss_pred C
Q 005849 617 T 617 (674)
Q Consensus 617 ~ 617 (674)
-
T Consensus 240 ~ 240 (323)
T 2cyb_A 240 Y 240 (323)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.18 E-value=0.0041 Score=65.29 Aligned_cols=72 Identities=15% Similarity=-0.015 Sum_probs=49.5
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhHHhhhChhHHHHHHhc
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dll~~ygaD~lR~~l~~ 615 (674)
+++|+.+.|.||.... +.+-++-. ++...| ..+.+.++...+|+|||||.+|+|+..| ++.+++.++=++..
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRR--LHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CCceEEecCchhHHHHHHHHHHHHH--hCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 3789999999997543 23333322 233334 3456778888899999999999999988 55666666655554
No 46
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=96.00 E-value=0.0069 Score=65.80 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=49.8
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cCCCCcceeEeeeeEeCCCCccccccCCCccChhh-------H----Hhhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID-------T----IKEF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d-------l----l~~y 604 (674)
+.+|+.+.|.||.... ..+-++-- + .+..| ..+.+.++...+|+|||||.||+|+..| + .+.-
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r--~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~~ki~~~~ 260 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRR--MYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQS 260 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHH--HHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSSTTTSCHHHHHHHHHTCC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hcCCCCe--eEeecccccCCccccccCCCCCeEecCCCCCCHHHHHHHHhcCC
Confidence 4799999999997643 22223322 2 33334 3566788888999999999999998877 1 1123
Q ss_pred ChhHHHHHHhcC
Q 005849 605 GADALRFTISLG 616 (674)
Q Consensus 605 gaD~lR~~l~~~ 616 (674)
.+|+.+|+-+.+
T Consensus 261 D~~v~~~l~~~t 272 (420)
T 1jil_A 261 DEDVIKFLKYFT 272 (420)
T ss_dssp HHHHHHHHHHHC
T ss_pred chhHHHHHHHHH
Confidence 466777654443
No 47
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.95 E-value=0.0066 Score=65.83 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=48.7
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh-------H----HhhhC
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID-------T----IKEFG 605 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d-------l----l~~yg 605 (674)
+.+|+.+.|.||..... .+-++-... ++..| ..+.+.++...+|+|||||.||+|+..| + .+.-.
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~-~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i~qki~~~~D 260 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTK-GEARA--FGLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDD 260 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHH-C--CC--EEEEECCCCCTTSCCTTCCSSCCCBSSTTTSCHHHHHHHHHTCCH
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhc-CCCCe--eecccccccCCCcccccCCCCCeEecCCCCCCHHHHHHHHhcCCc
Confidence 47999999999976442 222322220 33334 3566788888999999999999999877 1 11234
Q ss_pred hhHHHHHHhcC
Q 005849 606 ADALRFTISLG 616 (674)
Q Consensus 606 aD~lR~~l~~~ 616 (674)
+|+.+|+-+.+
T Consensus 261 ~~v~~~l~l~t 271 (419)
T 2ts1_A 261 RDVIRYLKYFT 271 (419)
T ss_dssp HHHHHHHHHHC
T ss_pred hhHHHHHHHHH
Confidence 66777654443
No 48
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.77 E-value=0.0088 Score=65.05 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=49.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC-ccChhh-----------HHhhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID-----------TIKEF 604 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN-~i~~~d-----------ll~~y 604 (674)
+.+|+.+.|.||.... ..+-++-- ++...| -.+.+.++...+|+|||||.|| +|+..| +.+.-
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlarr--~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d~~tsp~~i~qki~~~~ 261 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVRQ--KLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDPQMTSPYAWYQYFVNTA 261 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSSTTTSCHHHHHHHHHTCC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hCCCCc--cccccccccCCCcCcCCCCCCCCeEEccCCCCCHHHHHHHHhcCC
Confidence 4799999999997643 22223222 233434 3566778888999999999999 998877 11223
Q ss_pred ChhHHHHHHhcC
Q 005849 605 GADALRFTISLG 616 (674)
Q Consensus 605 gaD~lR~~l~~~ 616 (674)
.+|+.+|+-+.+
T Consensus 262 D~~v~~~l~l~t 273 (432)
T 2jan_A 262 DADVIRYLRWFT 273 (432)
T ss_dssp HHHHHHHHHHHS
T ss_pred chhHHHHHHHHH
Confidence 466667654443
No 49
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.76 E-value=0.014 Score=63.63 Aligned_cols=57 Identities=32% Similarity=0.402 Sum_probs=39.7
Q ss_pred CcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-cccccCCCccChhh
Q 005849 539 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~gN~i~~~d 599 (674)
.+|+...|.||..... .+-++- .+... | ...+.+.++...+|. |||||.||+|++.|
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdlar--r~~~~-~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQR--AYGQS-P-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHHH--HTTCC-C-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEEechHHHHHHHHHHHHHH--HhCCC-C-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 4899999999975332 222222 22233 3 345677888889996 99999999999866
No 50
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.75 E-value=0.0057 Score=65.01 Aligned_cols=58 Identities=22% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+.+|+...|.||.... +.+-++-- ++...| -.+.+.++...+|+|||||.||+|+..|
T Consensus 209 ~~~~i~p~G~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNIMSGYEFINK--LTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEEEEEGGGHHHHHHHHHHHHH--HSSCCC--EEEEECCCC-------------CCBSST
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH--hCCCCc--cccccccccCCCcccccCCCCCeeeccC
Confidence 3799999999997643 23333322 333444 3466778888899999999999999877
No 51
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.72 E-value=0.013 Score=61.90 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=40.8
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeEe-eeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYL-HGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~~-hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+.. .+ ..| ..++. +.++..++|+|||||.+|+|++.|
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 5689999999997643 33333322211 12 245 33444 567888999999999999998766
No 52
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.60 E-value=0.0095 Score=62.44 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=40.5
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeE--eeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~--~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++--+.. .+ ..| ..++ .+.++..++|+|||||.+|.|++.|
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 5679999999997543 33444322211 01 234 3344 3668888999999999999998765
No 53
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.53 E-value=0.0092 Score=64.22 Aligned_cols=60 Identities=23% Similarity=0.094 Sum_probs=39.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhh---h---------hc--C-CCCcceeEeeeeEeCCCCccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGI---E---------FT--G-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~---~---------~~--~-~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~d 599 (674)
+.+|+.+.|.||.... ..+-++--. . +. + ..| ..+.+.++...+|+|||||.||+|++.|
T Consensus 231 ~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDEC--VGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSC--EEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCc--cccccccCcCCchhhccCCCCCeeeccC
Confidence 3799999999995432 112222110 0 00 0 122 3456778888999999999999999877
No 54
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=95.21 E-value=0.018 Score=61.68 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN-~i~~~d 599 (674)
+.+|+.+.|.||..... .+.++-. +....| ..+.+.++..++|+|||||.+| +|++.|
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~r--~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLPA--LGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGG--GTCCCC--EEEEECCCCCSSCC-------CCSCBTTC
T ss_pred hcCCEEEcChhHHHHHHHHHHHHHH--cCCCCC--EEEecCccCCCCcccccCCCCCCeEeccC
Confidence 56789999999976442 2223222 223345 3556788888999999999999 788654
No 55
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.025 Score=60.96 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=31.5
Q ss_pred CCcceeEEeehhhhhHH-HHHHHHhhhhcCCCCcceeEeeeeEeCCC-CccccccCCCc-cChhh
Q 005849 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGNV-IDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-G~KMSKS~gN~-i~~~d 599 (674)
|.+|+.+.|.||..... .+.++ -.+....| ..+.+.++..++ |+|||||.+|. |++.|
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENL--PSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCCC----------CCSCBTTC
T ss_pred hCCCEEecCccHHHHHHHHHHHH--HHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 66899999999976432 22222 22333445 456678888899 99999999996 88654
No 56
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.92 E-value=0.041 Score=58.30 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=40.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEe-eeeEeCCCCc-cccccCCCccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL-HGLIRDSQGR-KMSKTLGNVIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~-hg~v~d~~G~-KMSKS~gN~i~~~dl 600 (674)
|-+|+...|.||.... +.+-++-.+. ..| ..| ..++. +.++..++|+ |||||.+|.|++.|=
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 5679999999997643 3333332211 112 345 33443 4678888997 999999999987553
No 57
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=93.92 E-value=0.047 Score=57.01 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCC-ccccccCCCccChhhH
Q 005849 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG-RKMSKTLGNVIDPIDT 600 (674)
Q Consensus 539 P~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G-~KMSKS~gN~i~~~dl 600 (674)
-+|+.+.|.||.... .+...++ ...| .+..+.++..++| +|||||.||+|++.|=
T Consensus 163 ~~~~v~~G~DQ~~~~---~l~R~i~--~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 163 GVDVAVGGMEQRKIH---MLARELL--PKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp TCSEEEEEGGGHHHH---HHHHHHS--SSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred CCCEEEcChhHHHHH---HHHHHhc--CCCc--EEeeccccccCCcccccCCCCcceecCCCC
Confidence 478999999997633 2222222 2334 3455678888999 7999999999987553
No 58
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.75 E-value=0.044 Score=57.74 Aligned_cols=60 Identities=27% Similarity=0.451 Sum_probs=39.3
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEee---eeEeCCCC-ccccccCCCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYLH---GLIRDSQG-RKMSKTLGNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~h---g~v~d~~G-~KMSKS~gN~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+- ..| ..| ..+++ .++..++| +|||||.+|.|++.|
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P--~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP--QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC--EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC--eeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 5689999999997643 2333332110 012 345 33333 58888999 999999999998765
No 59
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=93.68 E-value=0.041 Score=59.18 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCCccChhh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGNVIDPID 599 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN~i~~~d 599 (674)
+|+...|.||.... +.+-++-- ++...| .++.+.++..++| .|||||.+|+|++.|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 67889999997643 33333322 333445 3556778888999 799999999998654
No 60
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=93.32 E-value=0.066 Score=57.01 Aligned_cols=58 Identities=22% Similarity=0.133 Sum_probs=37.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCC-----------------Ccccccc-CCCccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-----------------GRKMSKT-LGNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-----------------G~KMSKS-~gN~i~~~ 598 (674)
|-+|+.+.|.||.... +.+-++ -.++...| .++.+.++..++ |+||||| .+|+|++.
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla--~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVA--EKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHH--TTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHH--HHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 5579999999997543 222222 22233445 346677888887 7999999 78999864
Q ss_pred h
Q 005849 599 D 599 (674)
Q Consensus 599 d 599 (674)
|
T Consensus 252 d 252 (364)
T 2cya_A 252 D 252 (364)
T ss_dssp C
T ss_pred C
Confidence 3
No 61
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=93.17 E-value=0.059 Score=63.77 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCcccccccc--------------cccccccCCCCcccceeeccccccchHHHHHHHHHHHhCCceE
Q 005849 372 EARKKLWSDLEETGLAVKKEPHT--------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~~~--------------~~~p~~~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~ 437 (674)
++-..++..|.++|++...+... .....|+|||.+++.+..+|||++++++++++++.++.. .-
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~--~~ 231 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL--DH 231 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC--TT
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc--cc
Confidence 45567888899999876533211 123568999999999999999999999999999998753 24
Q ss_pred echhHHHHHHHHHhc
Q 005849 438 MPERFEKIYNHWLSN 452 (674)
Q Consensus 438 ~P~~~~~~~~~~l~~ 452 (674)
+|+..+....+||..
T Consensus 232 wp~~v~~~~~~wig~ 246 (880)
T 4arc_A 232 WPDTVKTMQRNWIGR 246 (880)
T ss_dssp SCHHHHHHHHHHHCE
T ss_pred ccHHHHHHHHhhhcc
Confidence 799999999999953
No 62
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.17 E-value=0.068 Score=58.17 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
|-+++...|.||.... +.+-++-. ++...| .++.+.++..++| +|||||.+| +|++.|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADK--LKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHH--HTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHHH--hCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 4467888999997643 33333322 223456 3567788889999 999999999 898866
No 63
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=93.07 E-value=0.078 Score=56.90 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPI 598 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~ 598 (674)
+|+...|.||.... +.+-++-. ++...| ..+.+.++..++| +|||||.+| +|++.
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAES--LGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGG--GTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred CceeecccchHHHHHHHHHHHHH--cCCCCC--eeeecccccCCCCCccccccCCCCCeeeCC
Confidence 57789999997543 33333322 233455 4566788888898 599999998 88653
No 64
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.64 E-value=0.094 Score=55.97 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCC-CCcceeEeeeeEeCC-CCc-cccccC-CCccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QGR-KMSKTL-GNVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~-~G~-KMSKS~-gN~i~~~ 598 (674)
+-+|+...|.||.... +.+-++-.+ +.. .| .++.+.++..+ +|. |||||. +|+|++.
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~--~~~~~~--~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIK--KIKKKP--VILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHH--TCSCCC--EEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHh--CCCCCc--eEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 4578999999997543 333343322 222 23 35567788876 885 999999 5898864
No 65
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=92.57 E-value=0.099 Score=56.32 Aligned_cols=57 Identities=25% Similarity=0.248 Sum_probs=39.6
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~-gN~i~~~d 599 (674)
-+++...|.||.... +.+-++--+ +...| .++.+.++..++| .|||||. +|+|++.|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKAL--GEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHHc--CCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 467888999997644 334444332 33445 3556788888999 6999998 78998755
No 66
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=92.05 E-value=0.16 Score=54.45 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred cceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc-ccccc-CCCccChhh
Q 005849 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKT-LGNVIDPID 599 (674)
Q Consensus 540 ~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS-~gN~i~~~d 599 (674)
.++...|.||.... +.+-++-. ++...| .++.+.++..++|. ||||| .+|.|++.|
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred ccccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC
Confidence 45666699997644 44444433 333456 45577788888995 99999 899997644
No 67
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=91.93 E-value=0.11 Score=54.43 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh--hc--CCCCcceeEe--eeeEeCCCC--ccccccCCC-c--cChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE--FT--GSVPFSHVYL--HGLIRDSQG--RKMSKTLGN-V--IDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~--~~--~~~Pf~~v~~--hg~v~d~~G--~KMSKS~gN-~--i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+. +. -..| .-++. +.++..++| +|||||.+| . |++.|
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 5689999999997543 3333332211 11 1234 23332 467778889 999999999 7 87655
No 68
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=91.66 E-value=0.12 Score=55.59 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 541 TMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 541 d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
.+...|.||.... +.+-++-- ++...| .++.+.++..++| .|||||.+| +|+..|
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPR--LGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGG--GTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 3567899997543 23333322 333445 4566788888899 799999988 888654
No 69
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=91.64 E-value=0.1 Score=55.24 Aligned_cols=57 Identities=19% Similarity=0.047 Sum_probs=37.0
Q ss_pred CcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCC-CC-ccccccC-CCccChhh
Q 005849 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTL-GNVIDPID 599 (674)
Q Consensus 539 P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~-gN~i~~~d 599 (674)
-+|+...|.||.... +.+-++- .++...| .+..+.++..+ +| +|||||. +|+|++.|
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia~--r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYAN--DRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHHH--HTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred CCcEEEeccChHHHHHHHHHHHH--HhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 478889999997543 2222322 2333335 34556777777 67 7999999 68898644
No 70
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=91.60 E-value=0.13 Score=55.90 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~d 599 (674)
|-++++..|.||.... +.+-++ --++...| .++.+.++..++| +|||||.+| +|++.|
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla--~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHHHHHHHHHHH--HHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 3445666799997643 222222 22223456 3467788889999 899999999 898754
No 71
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.45 E-value=0.12 Score=54.69 Aligned_cols=60 Identities=27% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhh-hcC---CCCcceeEe---eeeEeCCCC--ccccccCCC---ccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL---HGLIRDSQG--RKMSKTLGN---VIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~-~~~---~~Pf~~v~~---hg~v~d~~G--~KMSKS~gN---~i~~~d 599 (674)
|-+|+...|.||.... +.+-++-.+. ..| ..| ..++ +.++..++| +|||||.+| +|++.|
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P--~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D 218 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP--QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD 218 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC--EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC--eeecccccccccCCCCcchhcCCCCCCCCceEeecC
Confidence 5689999999997643 3333332221 012 245 3334 467788888 999999999 898766
No 72
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=90.73 E-value=0.18 Score=55.54 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCC--ccccccCCC-ccChhhH
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDT 600 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~gN-~i~~~dl 600 (674)
|-++++..|.||.... +.+-++ -.++...| .++.+.++..++| .|||||.+| +|++.|=
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla--~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVA--PRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHHHHHHHHHHH--HHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 3445666899997643 222222 22233456 3566788889999 899999999 8987543
No 73
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=90.17 E-value=0.22 Score=53.21 Aligned_cols=58 Identities=24% Similarity=0.099 Sum_probs=37.7
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcC--------C-CCcceeEeeeeEeCCCC------------------ccccc
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTG--------S-VPFSHVYLHGLIRDSQG------------------RKMSK 589 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~--------~-~Pf~~v~~hg~v~d~~G------------------~KMSK 589 (674)
|-+|+...|.||.... +.+-++-. ++. . .| .++.+.++..++| +||||
T Consensus 179 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSK 254 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAHVIAIEVAQK--LRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSK 254 (375)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGG--CSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGG
T ss_pred hCCCeecccchHHHHHHHHHHHHHH--hCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhcccC
Confidence 4579999999997543 22222211 222 1 23 2455678888888 89999
Q ss_pred cC-CCccChhh
Q 005849 590 TL-GNVIDPID 599 (674)
Q Consensus 590 S~-gN~i~~~d 599 (674)
|. +|+|++.|
T Consensus 255 S~~~~~I~L~d 265 (375)
T 2cyc_A 255 SKPYSAVFIHD 265 (375)
T ss_dssp SCGGGSCBTTC
T ss_pred CCCCCeeccCC
Confidence 98 78898754
No 74
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=90.16 E-value=0.26 Score=58.53 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCcccccc--------------cccccccccC-CCCcccceeeccccccchHHHHHHHHHHHhCCce
Q 005849 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQR-GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (674)
Q Consensus 372 ~ar~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r-~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~ 436 (674)
+.-..++..|.++|++...+. .+.....|+| ||.+++.+..+|||++++++++++++.++. ..
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~--~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEG--LN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTT--CB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhh--cC
Confidence 455678899999998754221 1122456899 999999999999999999999999998864 34
Q ss_pred EechhHHHHHHHHHh
Q 005849 437 IMPERFEKIYNHWLS 451 (674)
Q Consensus 437 ~~P~~~~~~~~~~l~ 451 (674)
.|+..++...+||.
T Consensus 212 -~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 212 -WPEKVKAMQRAWIG 225 (878)
T ss_dssp -SCHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHhc
Confidence 89999999999995
No 75
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=89.08 E-value=0.13 Score=53.86 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~G 140 (674)
-|||.|||||..+.+.. +.++++ |+++++..| |-|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha 46 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHA 46 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHH
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCee
Confidence 46689999999876543 455655 999888765 4443
No 76
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=87.90 E-value=0.29 Score=56.25 Aligned_cols=57 Identities=23% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCC-CCcceeEeeeeEeCC-CC-ccccccCC-CccChh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGS-VPFSHVYLHGLIRDS-QG-RKMSKTLG-NVIDPI 598 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~-~Pf~~v~~hg~v~d~-~G-~KMSKS~g-N~i~~~ 598 (674)
+-+|+...|.||.... +.+-++-. ++.. .| .++.+.++..+ +| +|||||.+ |+|+..
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r--~n~~~~p--~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDL--IGRKLKP--VILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--TTCCCCC--EEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred hCCCEEeccccHHHHHHHHHHHHHH--hCCCCCc--eEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 4578999999997643 33333322 2222 13 34567788887 88 49999997 788753
No 77
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=87.55 E-value=0.47 Score=48.96 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=22.1
Q ss_pred cceeEEeehhhhhHHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCCCccChhhH
Q 005849 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (674)
Q Consensus 540 ~d~~~~G~Dii~~w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~gN~i~~~dl 600 (674)
.+..+-|.|.+-.-..... +..++....| .+..++++++.+|+|||||.||+ .+++.
T Consensus 185 iThvIrG~D~l~~t~~q~~-l~~alG~~~p--~~~H~pll~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 185 VTEIVRGADLIEPTVRQIS-LYQLFGWKVP--DYIHLPLALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp CCEEEEEGGGHHHHHHHHH-HHHHHTCCCC--EEEEECBCCC--------------CCCSS
T ss_pred CCEEEeCccccccHHHHHH-HHHHcCCCCC--eEEEeeeeECCCCCcccccCCcc-ChhcC
Confidence 3444559998744333222 2222322333 66666788899999999999997 44443
No 78
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=86.39 E-value=0.47 Score=49.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cC---CCCcceeEee---eeEeCC-CC-ccccccCC---CccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYLH---GLIRDS-QG-RKMSKTLG---NVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~---~~Pf~~v~~h---g~v~d~-~G-~KMSKS~g---N~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+.. .+ ..| ..+++ .++..+ +| +|||||.+ |.|++.|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p--~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP--EPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC--EECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc--chhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 4578999999998643 45555433321 11 123 33333 345556 67 59999997 6887643
No 79
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=85.30 E-value=0.41 Score=52.09 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=33.8
Q ss_pred eeEEeehhhhhH-HHHHHHHhhhhcCCCCcceeEeeeeEeCCCCc--cccccCCC-ccCh
Q 005849 542 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTLGN-VIDP 597 (674)
Q Consensus 542 ~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~gN-~i~~ 597 (674)
+...|.||.... +++-++-. ++...| .++.+.++..++|. |||||.+| .|..
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~r--fn~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPR--MGHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTT--TTSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHHHHHHHHHHHHH--hCCCCC--eeecCCcccCCCCCCCccCCCCCCCeeee
Confidence 556799998654 34444322 222334 45567778888885 99999987 6664
No 80
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=85.14 E-value=0.24 Score=52.13 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhh-cCC--CCc--ceeEe---eeeEeCC-CC-ccccccC---CCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEF-TGS--VPF--SHVYL---HGLIRDS-QG-RKMSKTL---GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~-~~~--~Pf--~~v~~---hg~v~d~-~G-~KMSKS~---gN~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+.. .+. .+| ...++ +.++..+ +| +|||||. +|.|.+.|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC
Confidence 4578999999998644 55555533321 121 111 12233 3456666 57 6999999 78997643
No 81
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=84.59 E-value=1.2 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.+..| --|||.|||||+. .+. .+.++++ .|+++++..|
T Consensus 33 ~~vy~G-~~PTg~lHlG~l~-~l~--~~~~lq~-~g~~~~~~i~ 71 (323)
T 2cyb_A 33 PRAYVG-YEPSGEIHLGHMM-TVQ--KLMDLQE-AGFEIIVLLA 71 (323)
T ss_dssp CEEEEE-ECCCSCCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CEEEEC-cCCCCcchHHHHH-HHH--HHHHHHH-CCCcEEEEEC
Confidence 344444 2577999999963 222 3444444 4888777654
No 82
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=82.52 E-value=1.4 Score=47.31 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||+++.+. +.++++ .|+++++..|
T Consensus 47 ~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 3479999999877654 444554 6888777654
No 83
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=82.26 E-value=0.48 Score=50.33 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.||||| +..+. .+.++++ .|+++++..|
T Consensus 43 ~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~ia 74 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEA 74 (364)
T ss_dssp CCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 4579999999 54332 3444444 4899888766
No 84
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=81.74 E-value=1.4 Score=46.73 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=36.2
Q ss_pred cceeEEeehhhhh-HHHHHHHHhhhhcCCCCcceeEeeeeEeCCCCccccccCC-CccCh
Q 005849 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG-NVIDP 597 (674)
Q Consensus 540 ~d~~~~G~Dii~~-w~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~g-N~i~~ 597 (674)
+.+..-|.||... =+++-++--+.-.-+.|......+.++-.++|.|||||.. |+|..
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 4577789999853 3555555332211112223566677777889999999984 46654
No 85
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.72 E-value=0.75 Score=49.23 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~ 139 (674)
++++.+..| --|||.|||||..+.+. ..+++...|++|.+..| |-|
T Consensus 71 ~~p~~i~sG-~~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~h 116 (392)
T 3jxe_A 71 GRGFFLYTG-RGPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDE 116 (392)
T ss_dssp TCCCEEEEE-ECCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHH
T ss_pred CCCeEEEec-cCCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chH
Confidence 344555555 24569999999887642 22344446998888776 444
No 86
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=80.30 E-value=2 Score=45.58 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 101 VTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 101 ~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
|||.|||||.++.+. +.++++ .|+++++..|
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 679999999877655 445555 6888777654
No 87
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=80.04 E-value=1.1 Score=47.76 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCcceeEEeehhhhhH-HHHHHHHhhhhcCCCCc--ceeEee---eeEeCC-CC-ccccccC---CCccChhh
Q 005849 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPF--SHVYLH---GLIRDS-QG-RKMSKTL---GNVIDPID 599 (674)
Q Consensus 538 ~P~d~~~~G~Dii~~w-~~~~~~~~~~~~~~~Pf--~~v~~h---g~v~d~-~G-~KMSKS~---gN~i~~~d 599 (674)
|-+|+...|.||.... +++-++-.+...-+.+| ...+++ ..+..+ +| +|||||. +|.|.+.|
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 4578999999998543 45555433221111111 122332 234444 44 7999999 89997643
No 88
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=78.25 E-value=1.4 Score=46.31 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=21.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHcC-CCeeecCC
Q 005849 101 VTGSLHMGHAMFVTLEDIMVRYHRMKG-RPTLWLPG 135 (674)
Q Consensus 101 ~nG~LHlGH~~~~~~~DiiaRy~r~~G-~~V~~~~G 135 (674)
|||.|||||..+.+ --+.++++ .| ++|++..|
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~Ia 42 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIV 42 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEEC
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEe
Confidence 56899999988764 22334454 46 88777654
No 89
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=76.92 E-value=2.2 Score=45.48 Aligned_cols=43 Identities=5% Similarity=-0.040 Sum_probs=30.1
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.+..| --|||.|||||..+. .++.++++.-|..|.++.|
T Consensus 80 ~~~~~vysG-~~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~ 122 (386)
T 3hzr_A 80 KKPTFIFIQ-KYPQKEVALEEYITL---EFARYLQDAFNIQVIIQIL 122 (386)
T ss_dssp TCCEEEEEE-ECCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEec-cCCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeC
Confidence 567777777 478899999997765 2334456666887777743
No 90
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=73.63 E-value=2.9 Score=44.66 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~n-G~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.+..| --|| |.|||||....+ .+.++++.-|..|.+..|
T Consensus 72 g~~~~vy~G-~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~ 115 (393)
T 3hv0_A 72 GELFYLYTG-RGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT 115 (393)
T ss_dssp TCCCEEEEE-ECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC
T ss_pred CCCeEEEeC-CCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc
Confidence 445666666 4677 689999966554 355577776877777444
No 91
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=73.02 E-value=1.9 Score=46.94 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~n-G~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.+..| --|| |.|||||..... .+.+++..-|..|.+..|
T Consensus 89 g~p~~vytG-~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 89 GHPIYIYTG-RGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp TCCEEEEEE-ECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC
T ss_pred CCCeEEEec-CCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee
Confidence 467888888 5788 889999976553 344566665777777544
No 92
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=72.52 E-value=2.4 Score=45.32 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 005849 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~ 136 (674)
++++.+..| --||| .|||||.... ..+.++++.-|..|..+.|=
T Consensus 76 ~~~~~vy~G-~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D 120 (395)
T 3i05_A 76 GQPFYLYTG-RGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTD 120 (395)
T ss_dssp TCCEEEEEE-ECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECH
T ss_pred CCCeEEEEe-ecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcc
Confidence 467777777 47889 6999998654 34455666668888776443
No 93
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=71.77 E-value=1.2 Score=46.85 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=21.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||..+.+- -+.+++. |+++.+..+
T Consensus 14 ~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia 45 (341)
T 3sz3_A 14 QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV 45 (341)
T ss_dssp CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe
Confidence 4679999999987652 2334444 577776554
No 94
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=70.38 E-value=5.1 Score=45.98 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=28.7
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHH-HHHHHHHHcCCCeeecCCCCCCCc
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPGTDHAGI 141 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~D-iiaRy~r~~G~~V~~~~G~D~~Gl 141 (674)
++.|..| --|||.||||| .++.- .+.++++ .|++|.+..| |-|++
T Consensus 40 ~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 40 LIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CceEEee-ecCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 4555555 46778999999 32222 2445554 5999888776 55654
No 95
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=69.92 E-value=1.8 Score=45.53 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=19.4
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||..+.+. -+.++++ .++|++..|
T Consensus 30 ~PTG~lHLGn~~g~l~--~~~~lQ~--~~~~~~~Ia 61 (351)
T 1yi8_B 30 RPTGALHLGHLAGSLQ--NRVRLQD--EAELFVLLA 61 (351)
T ss_dssp CCSSCCBHHHHHHTHH--HHHHHTS--SSEEEEEEC
T ss_pred CCCCCccHHHHHHHHH--HHHHHHH--hCCeEEEEe
Confidence 3469999999987642 2223333 367766543
No 96
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=69.75 E-value=1.5 Score=45.74 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=21.5
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||..+.+. -+.+++ .|+++++..|
T Consensus 9 ~PTG~lHlGn~vg~l~--~~~~lQ--~g~~~~~~Ia 40 (328)
T 1i6k_A 9 QPSGVITIGNYIGALR--QFVELQ--HEYNCYFCIV 40 (328)
T ss_dssp CCCSCCBHHHHHHTHH--HHHHHT--TTSEEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHHH--cCCcEEEEEe
Confidence 3569999999987762 122333 3999877655
No 97
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=69.60 E-value=2.5 Score=45.79 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~n-G~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.|..| --|| |.|||||....+. +.+++...|+++++..|
T Consensus 100 g~~~~vy~G-~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 100 GKPFFLYTG-RGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp TCCCEEEEE-ECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEe-ecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 446666666 4677 8999999986542 34566657999888776
No 98
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=68.76 E-value=3.2 Score=45.60 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~n-G~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.|..| --|| |.|||||..+.+. +.++++.-|++|++..|
T Consensus 153 ~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~ 196 (477)
T 1r6t_A 153 KKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 196 (477)
T ss_dssp TCCEEEEEE-ECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 457777777 4678 8999999987653 33555557998777665
No 99
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=68.45 E-value=3.1 Score=45.05 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~n-G~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.|..| --|| |.|||||..+.+. +.+++...|+++++..|
T Consensus 106 ~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIg 149 (437)
T 1r6u_A 106 KKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 149 (437)
T ss_dssp TCCEEEEEE-ECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 457777777 4678 8999999987652 33556557998777665
No 100
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=67.36 E-value=3 Score=44.59 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=26.2
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+..+..| --|||+ |||||... + -.+.++++ .|+++++..|
T Consensus 64 ~~~vy~G-~dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 64 RIGAYVG-IDPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCEEEEE-ECCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC
T ss_pred CCEEEEe-ecCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc
Confidence 3444445 356799 99999873 2 23556664 4999888765
No 101
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=67.17 E-value=2.6 Score=44.73 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+++|.|.+| =-|||.|||||..... -.+++...|++|.+..+
T Consensus 68 gk~~~v~sG-~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 68 GERVAVLTG-FMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA 109 (372)
T ss_dssp TCCCEEEEE-ECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEeC-cCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe
Confidence 456666666 3678999999987432 23444446999887654
No 102
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=65.23 E-value=5.8 Score=42.51 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=29.9
Q ss_pred CCCEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 89 ~~~f~i~~~pP~~nG-~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++++.+..| --||| .|||||..+.. .+.++++.-|..|.+..|
T Consensus 99 ~~p~~vy~G-~~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 99 NRPFYLYTG-RGPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp TCCEEEEEE-ECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEe-eCCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee
Confidence 567877777 57888 79999977652 344466665888777544
No 103
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=65.09 E-value=2.9 Score=43.31 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
++.+..+ --|||.||||| +..+. .+.++++ .|+++++..|
T Consensus 28 ~~~vy~G-~~PTg~lHlGh-l~~l~--~~~~lQ~-~g~~~~~~i~ 67 (314)
T 2zp1_A 28 EKSAYIG-FEPSGKIHLGH-YLQIK--KMIDLQN-AGFDIIILLA 67 (314)
T ss_dssp SEEEEEE-ECCCSSCBHHH-HHHHH--HHHHHHH-TTEEEEEEEC
T ss_pred CCEEEEc-cCCCCCcchhh-HHHHH--HHHHHHH-CCCCEEEEEe
Confidence 3444444 24479999999 54432 3444444 4888887665
No 104
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=64.22 E-value=3.4 Score=44.53 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=25.4
Q ss_pred EEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
..+..| --|||+ |||||... --.+.++++ .||++++..|
T Consensus 31 ~~iy~G-~dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg 70 (419)
T 2ts1_A 31 VTLYCG-FDPTADSLHIGHLAT---ILTMRRFQQ-AGHRPIALVG 70 (419)
T ss_dssp CEEEEE-ECCSSSSCBGGGHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 334444 356688 99999763 223556554 5999888765
No 105
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=63.82 E-value=3.2 Score=43.47 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 005849 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (674)
Q Consensus 91 ~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~ 134 (674)
..+.+-.. |||.|||||..+.+. -+.+++ ..|++|.+..
T Consensus 13 ~~v~~G~~--PTG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~I 51 (340)
T 2g36_A 13 MRILSGMR--PTGKLHIGHLVGALE--NWVKLQ-EEGNECFYFV 51 (340)
T ss_dssp CEEEEEEC--CCSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEE
T ss_pred CeEEEeeC--CCCcccHHhHHHHHH--HHHHHH-HCCCCEEEEE
Confidence 34444443 458999999987542 333333 4689988876
No 106
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=63.45 E-value=2 Score=45.19 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=19.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHH-cCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRM-KGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~-~G~~V~~~~G 135 (674)
-|||.|||||..+.+. .+.++ .++++.+..+
T Consensus 23 ~PTG~lHLGh~vg~l~-----~~~~lQ~~~~~~~~ia 54 (346)
T 3n9i_A 23 QPSGELTIGNYMGALR-----QWVQMQDDYDCIYCIV 54 (346)
T ss_dssp CSCSCCBHHHHHHTHH-----HHHTTTTTSEEEEEEC
T ss_pred CCCCcccHHHHHHHHH-----HHHHHHhhCcEEEEEe
Confidence 4669999999887642 22222 4677766554
No 107
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=63.05 E-value=3.6 Score=44.47 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=25.1
Q ss_pred EEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
..+..| --|||+ |||||+. .+. .+.++++ .|+++++..|
T Consensus 33 ~~iy~G-~dPTg~sLHLGhlv-~l~--~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 33 MTVYAG-FDPTAPSLHAGHLV-PLL--TLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CEEEEE-ECCSSSSCBGGGHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CEEEEe-eCCCCCCcCHHHHH-HHH--HHHHHHH-CCCcEEEEEc
Confidence 344444 356795 9999943 333 3666664 5999888765
No 108
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=62.40 E-value=3.5 Score=42.81 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=24.2
Q ss_pred EEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 93 VISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 93 ~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
.|..| --|||. |||||... --.+.++++ .|+++++..|
T Consensus 35 ~vy~G-~~PTg~slHlGh~l~---l~~~~~lQ~-~g~~~~~~i~ 73 (322)
T 2yxn_A 35 ALVCG-FDPTADSLHLGHLVP---LLCLKRFQQ-AGHKPVALVG 73 (322)
T ss_dssp EEEEE-ECCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred EEEEe-ecCCCCcccHHHHHH---HHHHHHHHH-cCCcEEEEEc
Confidence 33444 356699 99999762 233555554 4898888765
No 109
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=62.17 E-value=3.5 Score=44.48 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=26.0
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 91 ~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+..+..| --|||+ |||||... --.+.++++ .|+++++..|
T Consensus 32 ~~~iy~G-~dPTg~sLHlGh~v~---l~~~~~lQ~-~G~~~~~lIg 72 (420)
T 1jil_A 32 QVTLYCG-ADPTADSLHIGHLLP---FLTLRRFQE-HGHRPIVLIG 72 (420)
T ss_dssp CCEEEEE-ECCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 3444444 356788 99999763 223556654 5999888765
No 110
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=61.42 E-value=3.3 Score=43.70 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=25.5
Q ss_pred EEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 92 FVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 92 f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+.|..| --|||+ ||||| +..+. .+.++++ .|+++++..|
T Consensus 47 ~~vy~G-~~PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 47 QTIYCG-FDPTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVG 86 (356)
T ss_dssp CEEEEE-ECCSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEEC
T ss_pred CEEEEe-ecCCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEc
Confidence 455555 356796 99999 43333 3556664 5899888765
No 111
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=58.88 E-value=2.7 Score=44.22 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
-|||.|||||..+.+. -+.+++. |+++++..|
T Consensus 12 ~PTG~lHLGn~vg~l~--~~~~lQ~--~~~~~~~Ia 43 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQ--SLIELQE--QCQLFVFVA 43 (348)
T ss_dssp CCCTTCBHHHHHHTGG--GHHHHHH--HSEEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh--CCcEEEEEc
Confidence 4569999999987662 2224454 788776554
No 112
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=55.60 E-value=5.6 Score=42.20 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.5
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHH-HHHHHHHHcCCCeeecCCCCCCC
Q 005849 92 FVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPGTDHAG 140 (674)
Q Consensus 92 f~i~~~pP~~nG~LHlGH~~~~~~~D-iiaRy~r~~G~~V~~~~G~D~~G 140 (674)
..|..| --|||.|||||. ++.- .+.++++ .|++|.+..| |-|+
T Consensus 57 ~~iy~G-~~PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa-D~ha 100 (373)
T 3vgj_A 57 LICYDG-FEPSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA-DWFA 100 (373)
T ss_dssp CEEEEE-ECCCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC-HHHH
T ss_pred ceEEeC-CCCCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe-ccee
Confidence 334444 345689999992 3222 2455554 4999888766 4443
No 113
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=55.35 E-value=6 Score=42.00 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchhHHHHHHHHHHcCCCccccCHHHHHHHHHHHH-HHHH
Q 005849 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK-EKYG 178 (674)
Q Consensus 100 ~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~Gl~~e~~ve~~~~~~g~~~~~l~~e~f~~~~~~~~-~~~~ 178 (674)
-|||.|||||.+..+ -.+.++++ .|+++.+..|= -|++-. ...|.++ +.+++++ +++.
T Consensus 41 ~PTg~lHlG~yl~~l--~~~~~lQ~-~G~~~~~~iaD-~ha~~~--------~~~g~~~---------e~i~~~~~~~~~ 99 (375)
T 2cyc_A 41 EISGYIHLGTGLMAG--AKIADFQK-AGIKTRVFLAD-WHSWIN--------DKLGGDL---------EVIQEVALKYFK 99 (375)
T ss_dssp CCCSCCBHHHHHHHH--HHHHHHHH-TTCBCEEEECH-HHHHHT--------TGGGGCH---------HHHHHHHHHTHH
T ss_pred CCCCCcCchHHHHHH--HHHHHHHH-CCCcEEEEecC-cEEEcC--------CCCCCCH---------HHHHHHHHHHHH
Confidence 456899999944432 23445555 48888776652 222100 0011121 2233444 4455
Q ss_pred HHHHHHHHHhccccC
Q 005849 179 GTITSQIKRLGASCD 193 (674)
Q Consensus 179 ~~~~~~l~~lgi~~D 193 (674)
..+..++..+|+..+
T Consensus 100 ~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 100 VGMEKSIEVMGGDPK 114 (375)
T ss_dssp HHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCcc
Confidence 556678888887554
No 114
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=54.88 E-value=5.3 Score=43.21 Aligned_cols=41 Identities=24% Similarity=0.517 Sum_probs=26.4
Q ss_pred CCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~-LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+++.+..| --|||+ |||||... --.+.++++ .|+++++..|
T Consensus 36 ~~~~vy~G-~dPTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg 77 (432)
T 1h3f_A 36 RPLTVKLG-ADPTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIG 77 (432)
T ss_dssp SCCEEEEE-ECTTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred CCcEEEEc-ccCCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEc
Confidence 34444445 356785 99999772 334555554 5999888766
No 115
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=54.73 E-value=6.4 Score=41.32 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 005849 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (674)
Q Consensus 90 ~~f~i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G 135 (674)
+++.+..| --|||.|||||....+ -.+.++++ .|+++.+..|
T Consensus 39 ~~~~vy~G-~~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~ 80 (348)
T 2j5b_A 39 RIFTAYNG-FEPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIA 80 (348)
T ss_dssp CCEEEEEE-ECCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEEC
T ss_pred CCCEEEec-cCCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEec
Confidence 34444445 2556999999933322 33445555 4898877654
No 116
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=48.05 E-value=4.7 Score=42.99 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=25.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 005849 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (674)
Q Consensus 94 i~~~pP~~nG~LHlGH~~~~~~~DiiaRy~r~~G~~V~~~~G~D~~ 139 (674)
|..| =-|||.|||||..+.+.. +.+++ .|++|.+..+ |-|
T Consensus 38 i~sG-~~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~h 77 (388)
T 3prh_A 38 IFSG-IQPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQH 77 (388)
T ss_dssp EEEE-ECCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHH
T ss_pred EEEe-eCCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cce
Confidence 5555 367799999998876541 22233 4898877654 444
No 117
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=35.77 E-value=11 Score=32.90 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=56.8
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHH-------------HHHHHhccccCCCCccccCChhHHHHHHHHHHHHHHcCce
Q 005849 156 IKRVELSRDEFTKRVWEWKEKYGGTIT-------------SQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLI 222 (674)
Q Consensus 156 ~~~~~l~~e~f~~~~~~~~~~~~~~~~-------------~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGli 222 (674)
+...++++|++.+++|+.+++..+-.. ..|++|||+ ..+++ .+...+.++|++
T Consensus 12 ~hl~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGid--------gvda~------~iVd~~~e~gLL 77 (121)
T 3kp1_E 12 AHLANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGFS--------SLEAK------AIVDKTMDRGLM 77 (121)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTCC--------HHHHH------HHHHHHHHTTCG
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCCC--------ccchH------HHHHHHHHcccc
Confidence 345678889999999998877665432 246778863 22332 488999999999
Q ss_pred EEcccceeccCCCCcccccchhh
Q 005849 223 YQGSYMVNWSPNLQTAVSDLEVE 245 (674)
Q Consensus 223 y~~~~~v~w~p~~~t~lsd~Ev~ 245 (674)
-+|-..+.|.-.+.+.++-.|+-
T Consensus 78 gkGAa~~v~~a~~e~g~s~qeaa 100 (121)
T 3kp1_E 78 GKGAGHIVYKIAKEKNISVREAG 100 (121)
T ss_dssp GGCHHHHHHHHHHHTTCCHHHHH
T ss_pred cccHHHHHHHHHHHcCCCHHHHH
Confidence 99998888888888888887774
Done!