Query 005852
Match_columns 674
No_of_seqs 154 out of 249
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 14:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 98.9 1E-09 2.2E-14 83.7 4.3 44 387-441 1-45 (45)
2 PF00395 SLH: S-layer homology 98.0 8E-06 1.7E-10 62.4 3.8 43 465-514 1-45 (45)
3 KOG1029 Endocytic adaptor prot 95.7 0.32 7E-06 57.6 16.2 33 562-595 360-392 (1118)
4 PRK00106 hypothetical protein; 95.1 2.5 5.4E-05 48.6 20.4 116 557-672 84-208 (535)
5 KOG1029 Endocytic adaptor prot 94.9 1.4 3.1E-05 52.5 18.1 83 580-664 399-496 (1118)
6 PRK12704 phosphodiesterase; Pr 92.2 17 0.00037 41.7 20.4 63 562-624 74-136 (520)
7 TIGR03319 YmdA_YtgF conserved 91.9 19 0.00041 41.3 20.4 30 642-671 154-186 (514)
8 PF09726 Macoilin: Transmembra 91.9 9.8 0.00021 45.2 18.7 25 559-583 491-515 (697)
9 PRK00106 hypothetical protein; 91.3 13 0.00029 42.9 18.4 49 607-655 113-161 (535)
10 PF05701 WEMBL: Weak chloropla 90.6 25 0.00054 40.2 19.6 89 507-596 156-261 (522)
11 KOG0579 Ste20-like serine/thre 90.0 15 0.00032 44.2 17.2 78 556-633 834-948 (1187)
12 PLN03188 kinesin-12 family pro 89.5 11 0.00023 47.6 16.5 119 542-663 1105-1252(1320)
13 TIGR02169 SMC_prok_A chromosom 89.1 46 0.001 40.0 21.1 18 344-361 111-128 (1164)
14 TIGR02169 SMC_prok_A chromosom 88.8 50 0.0011 39.7 21.1 7 352-358 155-161 (1164)
15 KOG0161 Myosin class II heavy 88.5 40 0.00088 44.5 21.1 63 604-669 973-1035(1930)
16 PF08317 Spc7: Spc7 kinetochor 88.4 12 0.00025 40.1 14.2 18 342-359 6-23 (325)
17 TIGR02168 SMC_prok_B chromosom 88.3 50 0.0011 39.4 20.5 6 428-433 574-579 (1179)
18 PF10186 Atg14: UV radiation r 87.2 23 0.00051 35.8 15.0 21 644-664 123-143 (302)
19 TIGR03185 DNA_S_dndD DNA sulfu 87.1 55 0.0012 38.1 19.7 85 570-654 230-314 (650)
20 PF09726 Macoilin: Transmembra 86.2 47 0.001 39.7 18.7 22 554-575 500-521 (697)
21 smart00787 Spc7 Spc7 kinetocho 86.2 11 0.00025 40.5 12.7 31 501-531 118-150 (312)
22 PF07888 CALCOCO1: Calcium bin 86.0 60 0.0013 38.0 18.8 29 562-590 177-205 (546)
23 KOG0250 DNA repair protein RAD 85.7 44 0.00096 41.7 18.4 150 507-660 303-463 (1074)
24 PF10186 Atg14: UV radiation r 85.7 32 0.00069 34.8 15.0 75 582-656 75-149 (302)
25 PRK12704 phosphodiesterase; Pr 85.6 43 0.00093 38.6 17.5 6 664-669 185-190 (520)
26 TIGR03319 YmdA_YtgF conserved 85.2 48 0.001 38.1 17.6 28 602-629 101-128 (514)
27 PF10473 CENP-F_leu_zip: Leuci 85.1 40 0.00086 33.0 14.8 11 526-536 8-18 (140)
28 PTZ00266 NIMA-related protein 84.4 11 0.00024 46.7 12.8 40 501-541 409-448 (1021)
29 KOG0612 Rho-associated, coiled 84.1 47 0.001 42.0 17.7 53 616-671 721-773 (1317)
30 PRK12705 hypothetical protein; 83.7 94 0.002 36.1 19.8 116 556-672 63-181 (508)
31 PF04156 IncA: IncA protein; 83.6 40 0.00087 32.8 14.1 29 562-590 94-122 (191)
32 PRK11637 AmiB activator; Provi 83.4 78 0.0017 35.0 21.3 56 579-634 175-230 (428)
33 PF10146 zf-C4H2: Zinc finger- 83.4 28 0.0006 36.3 13.5 102 564-669 2-103 (230)
34 KOG0161 Myosin class II heavy 82.2 1E+02 0.0022 41.2 20.3 78 554-635 885-962 (1930)
35 PF07888 CALCOCO1: Calcium bin 82.0 74 0.0016 37.3 17.4 89 569-660 370-461 (546)
36 PHA02562 46 endonuclease subun 81.5 96 0.0021 34.7 18.7 14 350-363 110-123 (562)
37 PF05701 WEMBL: Weak chloropla 81.3 1.1E+02 0.0024 35.2 19.4 104 548-651 249-355 (522)
38 KOG0977 Nuclear envelope prote 81.3 57 0.0012 38.2 16.2 114 551-665 109-233 (546)
39 PRK09039 hypothetical protein; 81.3 50 0.0011 36.0 15.1 16 521-536 46-61 (343)
40 PF12072 DUF3552: Domain of un 81.1 64 0.0014 32.4 19.2 95 532-630 44-145 (201)
41 TIGR00634 recN DNA repair prot 81.0 34 0.00073 39.2 14.4 68 523-590 211-293 (563)
42 KOG1103 Predicted coiled-coil 80.9 62 0.0013 36.4 15.6 64 530-595 120-185 (561)
43 PRK11637 AmiB activator; Provi 80.9 96 0.0021 34.3 22.0 39 603-641 178-216 (428)
44 PF09731 Mitofilin: Mitochondr 80.5 1.1E+02 0.0025 34.9 18.9 81 578-659 342-424 (582)
45 COG1196 Smc Chromosome segrega 80.2 1.5E+02 0.0033 37.1 20.5 21 342-362 111-131 (1163)
46 PF00038 Filament: Intermediat 80.2 79 0.0017 32.9 20.2 115 551-671 183-303 (312)
47 PTZ00266 NIMA-related protein 80.1 29 0.00063 43.2 14.2 10 353-362 269-278 (1021)
48 PF07111 HCR: Alpha helical co 79.9 1.2E+02 0.0026 36.7 18.3 77 581-663 137-227 (739)
49 PF10174 Cast: RIM-binding pro 79.8 45 0.00097 40.4 15.3 20 555-574 31-50 (775)
50 PTZ00121 MAEBL; Provisional 79.2 1.4E+02 0.0031 39.0 19.3 8 535-542 1138-1145(2084)
51 COG1196 Smc Chromosome segrega 79.0 1.7E+02 0.0038 36.7 20.4 14 524-537 242-255 (1163)
52 PF03962 Mnd1: Mnd1 family; I 76.8 33 0.00071 34.5 11.3 69 579-658 85-153 (188)
53 KOG0612 Rho-associated, coiled 76.5 1.4E+02 0.0031 38.1 18.3 105 560-667 498-615 (1317)
54 PF12128 DUF3584: Protein of u 75.8 2.3E+02 0.005 35.9 20.7 12 349-360 222-233 (1201)
55 TIGR01069 mutS2 MutS2 family p 75.5 9.2 0.0002 45.7 8.2 64 577-640 497-560 (771)
56 KOG0996 Structural maintenance 74.8 1.9E+02 0.0041 37.0 18.6 21 610-630 392-412 (1293)
57 PF00769 ERM: Ezrin/radixin/mo 74.0 1.2E+02 0.0026 31.7 14.8 36 608-643 46-81 (246)
58 PRK04778 septation ring format 73.8 1.8E+02 0.0039 33.7 20.7 100 550-650 284-393 (569)
59 KOG1899 LAR transmembrane tyro 73.3 1E+02 0.0022 37.0 15.3 89 519-611 102-197 (861)
60 COG4942 Membrane-bound metallo 73.0 1.8E+02 0.0039 33.3 19.3 60 572-631 145-204 (420)
61 PF14362 DUF4407: Domain of un 72.2 1.3E+02 0.0029 31.5 16.4 112 556-670 128-251 (301)
62 KOG2391 Vacuolar sorting prote 71.7 19 0.00041 39.9 8.7 24 641-664 300-323 (365)
63 KOG3850 Predicted membrane pro 70.7 2E+02 0.0043 32.9 17.3 101 520-630 259-360 (455)
64 PF04111 APG6: Autophagy prote 70.0 39 0.00084 36.4 10.6 25 586-610 55-79 (314)
65 COG1579 Zn-ribbon protein, pos 69.6 1.3E+02 0.0027 32.0 13.9 30 640-669 117-146 (239)
66 PRK10884 SH3 domain-containing 69.6 47 0.001 34.1 10.6 23 570-592 93-115 (206)
67 KOG0971 Microtubule-associated 69.5 1.6E+02 0.0034 37.0 16.0 93 559-664 316-420 (1243)
68 KOG4643 Uncharacterized coiled 69.2 3.2E+02 0.007 34.7 18.7 17 556-572 395-411 (1195)
69 PTZ00121 MAEBL; Provisional 69.0 3.3E+02 0.0071 36.1 18.9 33 509-541 1087-1119(2084)
70 PF10473 CENP-F_leu_zip: Leuci 68.6 1.2E+02 0.0027 29.7 13.1 105 563-667 10-117 (140)
71 PRK00409 recombination and DNA 68.5 1.8E+02 0.0039 35.3 16.5 21 610-630 575-595 (782)
72 PF00038 Filament: Intermediat 68.4 1.6E+02 0.0034 30.8 17.5 69 556-624 47-115 (312)
73 PF10168 Nup88: Nuclear pore c 68.3 2.8E+02 0.006 33.6 19.2 57 510-572 534-591 (717)
74 PF04156 IncA: IncA protein; 67.6 1.2E+02 0.0027 29.4 15.0 12 549-560 89-100 (191)
75 PF10267 Tmemb_cc2: Predicted 67.6 2.2E+02 0.0048 32.2 16.4 58 522-582 213-270 (395)
76 KOG2129 Uncharacterized conser 67.1 1.7E+02 0.0036 33.8 14.8 115 556-670 202-325 (552)
77 PF10174 Cast: RIM-binding pro 66.6 3.1E+02 0.0068 33.6 18.3 92 569-660 328-419 (775)
78 PRK02224 chromosome segregatio 66.5 2.9E+02 0.0062 33.1 21.0 26 563-588 258-283 (880)
79 TIGR00606 rad50 rad50. This fa 66.2 3.6E+02 0.0078 34.4 19.2 15 524-538 825-839 (1311)
80 TIGR01069 mutS2 MutS2 family p 66.1 73 0.0016 38.4 12.8 74 556-630 512-590 (771)
81 KOG4661 Hsp27-ERE-TATA-binding 66.0 27 0.00059 41.2 8.8 34 603-640 654-687 (940)
82 KOG4673 Transcription factor T 65.5 3.3E+02 0.0071 33.4 17.3 70 566-639 391-469 (961)
83 PF12128 DUF3584: Protein of u 65.3 3.8E+02 0.0082 34.0 19.9 118 548-665 795-920 (1201)
84 PF05262 Borrelia_P83: Borreli 64.3 1.2E+02 0.0027 35.1 13.5 37 395-442 75-111 (489)
85 KOG4691 Uncharacterized conser 64.1 74 0.0016 33.2 10.6 44 525-573 81-131 (227)
86 KOG0977 Nuclear envelope prote 63.9 2.3E+02 0.005 33.5 15.6 99 556-661 85-183 (546)
87 KOG0964 Structural maintenance 63.7 4E+02 0.0088 33.9 19.4 49 615-663 393-441 (1200)
88 PF08317 Spc7: Spc7 kinetochor 63.5 2.2E+02 0.0047 30.7 18.0 31 502-532 124-156 (325)
89 PF02601 Exonuc_VII_L: Exonucl 63.0 2.1E+02 0.0045 30.2 17.5 87 553-640 155-241 (319)
90 PRK04863 mukB cell division pr 62.2 1.6E+02 0.0035 38.4 15.3 14 348-361 146-159 (1486)
91 PRK00409 recombination and DNA 61.2 97 0.0021 37.5 12.6 48 581-628 534-582 (782)
92 PRK04863 mukB cell division pr 61.0 5.1E+02 0.011 34.1 19.8 8 353-360 172-179 (1486)
93 PF04111 APG6: Autophagy prote 60.8 1.1E+02 0.0024 33.1 11.8 22 589-610 72-93 (314)
94 COG1579 Zn-ribbon protein, pos 60.0 2.4E+02 0.0052 30.0 16.9 13 602-614 89-101 (239)
95 PF09755 DUF2046: Uncharacteri 58.7 2.9E+02 0.0063 30.6 22.1 47 578-624 96-147 (310)
96 KOG0996 Structural maintenance 58.6 5.2E+02 0.011 33.5 18.0 30 562-591 418-447 (1293)
97 KOG0976 Rho/Rac1-interacting s 58.6 4.6E+02 0.01 32.9 18.4 117 505-621 325-472 (1265)
98 PRK03918 chromosome segregatio 58.3 3.1E+02 0.0067 32.7 15.9 29 565-593 195-223 (880)
99 KOG2129 Uncharacterized conser 58.1 32 0.00068 39.3 7.4 22 650-671 182-203 (552)
100 PHA02562 46 endonuclease subun 57.8 3.2E+02 0.0069 30.7 19.7 24 603-626 307-330 (562)
101 TIGR03545 conserved hypothetic 57.5 62 0.0014 37.7 9.9 47 605-651 212-258 (555)
102 PRK02224 chromosome segregatio 57.1 4.1E+02 0.0089 31.8 18.8 32 640-671 412-443 (880)
103 KOG0933 Structural maintenance 56.9 5.3E+02 0.011 33.0 19.8 31 308-338 538-569 (1174)
104 PRK03918 chromosome segregatio 56.9 4.1E+02 0.0088 31.7 19.9 12 506-517 143-154 (880)
105 KOG0979 Structural maintenance 55.6 5.4E+02 0.012 32.8 19.2 139 524-665 177-329 (1072)
106 KOG0976 Rho/Rac1-interacting s 55.3 5.2E+02 0.011 32.5 17.2 104 561-664 278-392 (1265)
107 PRK02292 V-type ATP synthase s 55.1 2.1E+02 0.0047 27.9 15.4 52 593-649 61-112 (188)
108 TIGR00606 rad50 rad50. This fa 55.0 5.6E+02 0.012 32.8 19.2 44 579-622 918-961 (1311)
109 PF08826 DMPK_coil: DMPK coile 55.0 1.2E+02 0.0027 26.0 8.8 55 533-591 6-60 (61)
110 PF02841 GBP_C: Guanylate-bind 54.8 2E+02 0.0043 30.5 12.3 12 352-363 38-49 (297)
111 PF04576 Zein-binding: Zein-bi 54.8 1.8E+02 0.004 27.1 10.9 75 577-664 13-94 (94)
112 KOG2891 Surface glycoprotein [ 54.0 3.5E+02 0.0075 30.0 15.8 22 566-587 327-348 (445)
113 TIGR03185 DNA_S_dndD DNA sulfu 54.0 3.1E+02 0.0067 32.2 14.8 14 550-563 184-197 (650)
114 KOG0978 E3 ubiquitin ligase in 53.8 4.9E+02 0.011 31.7 19.4 70 579-651 466-535 (698)
115 KOG4429 Uncharacterized conser 53.7 2E+02 0.0043 32.0 12.1 97 553-655 41-155 (421)
116 TIGR02231 conserved hypothetic 53.2 99 0.0021 35.0 10.4 13 605-617 95-107 (525)
117 PF07798 DUF1640: Protein of u 52.7 2.4E+02 0.0052 27.8 16.4 25 567-591 70-94 (177)
118 TIGR00634 recN DNA repair prot 52.4 4.2E+02 0.0091 30.6 15.3 30 560-589 209-238 (563)
119 PF00769 ERM: Ezrin/radixin/mo 52.0 3E+02 0.0066 28.8 15.2 54 577-630 43-96 (246)
120 PF06637 PV-1: PV-1 protein (P 51.2 2.9E+02 0.0063 31.6 13.2 39 576-614 323-361 (442)
121 PRK09039 hypothetical protein; 49.9 3.9E+02 0.0084 29.4 18.6 13 652-664 188-200 (343)
122 KOG0288 WD40 repeat protein Ti 49.7 3.2E+02 0.0069 31.6 13.3 97 522-623 28-125 (459)
123 cd07683 F-BAR_srGAP1 The F-BAR 49.3 2.2E+02 0.0048 30.6 11.5 109 555-665 22-138 (253)
124 KOG0982 Centrosomal protein Nu 48.6 5E+02 0.011 30.3 18.6 19 506-524 245-263 (502)
125 PF10226 DUF2216: Uncharacteri 48.3 3.4E+02 0.0074 28.3 15.6 122 524-667 19-145 (195)
126 KOG0249 LAR-interacting protei 48.3 3E+02 0.0064 33.9 13.3 10 597-606 204-213 (916)
127 PF02841 GBP_C: Guanylate-bind 47.5 2.7E+02 0.0058 29.5 12.0 14 349-362 4-17 (297)
128 COG2433 Uncharacterized conser 47.2 2.1E+02 0.0045 34.3 11.8 29 639-667 480-508 (652)
129 KOG0995 Centromere-associated 47.1 5.8E+02 0.012 30.6 17.3 79 575-653 274-355 (581)
130 PF13514 AAA_27: AAA domain 46.8 6.9E+02 0.015 31.4 18.4 77 594-670 285-376 (1111)
131 PF10498 IFT57: Intra-flagella 46.5 3.4E+02 0.0075 30.2 13.0 44 559-602 216-259 (359)
132 PF05667 DUF812: Protein of un 46.4 4.7E+02 0.01 31.1 14.7 35 327-361 71-107 (594)
133 KOG0018 Structural maintenance 46.3 4.1E+02 0.0089 33.9 14.5 59 614-672 418-476 (1141)
134 KOG4661 Hsp27-ERE-TATA-binding 46.0 3.3E+02 0.0071 32.8 13.0 30 508-537 596-625 (940)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.8 2.7E+02 0.0057 26.3 17.9 85 574-658 35-119 (132)
136 KOG0250 DNA repair protein RAD 45.5 7.7E+02 0.017 31.6 19.8 31 573-603 298-331 (1074)
137 PF11932 DUF3450: Protein of u 45.3 3.6E+02 0.0079 27.8 13.2 58 594-651 76-142 (251)
138 PF01991 vATP-synt_E: ATP synt 44.6 3E+02 0.0064 26.5 15.0 71 574-648 35-105 (198)
139 KOG0995 Centromere-associated 44.5 6.3E+02 0.014 30.3 15.8 32 556-587 287-318 (581)
140 PF12072 DUF3552: Domain of un 44.5 3.5E+02 0.0075 27.3 18.1 76 574-656 68-143 (201)
141 PRK06569 F0F1 ATP synthase sub 44.2 1.6E+02 0.0035 29.3 9.1 50 574-625 66-116 (155)
142 COG2433 Uncharacterized conser 43.5 2.5E+02 0.0054 33.7 11.7 133 507-651 374-506 (652)
143 KOG1772 Vacuolar H+-ATPase V1 43.1 2.7E+02 0.0059 26.6 9.8 52 578-631 36-87 (108)
144 COG4372 Uncharacterized protei 42.9 5.8E+02 0.013 29.5 13.9 42 555-597 81-122 (499)
145 COG1318 Predicted transcriptio 42.3 2.5E+02 0.0054 28.9 10.1 94 510-613 48-155 (182)
146 PF15642 Tox-ODYAM1: Toxin in 42.2 1.6E+02 0.0035 32.4 9.3 74 551-630 92-166 (385)
147 PRK05689 fliJ flagellar biosyn 41.8 3E+02 0.0065 25.8 13.1 74 598-671 23-102 (147)
148 KOG1103 Predicted coiled-coil 41.7 1.5E+02 0.0032 33.6 9.2 76 547-626 209-290 (561)
149 PF06428 Sec2p: GDP/GTP exchan 41.4 68 0.0015 29.7 5.7 61 563-623 1-65 (100)
150 PRK10869 recombination and rep 40.7 5.4E+02 0.012 30.0 13.9 23 524-546 208-231 (553)
151 smart00787 Spc7 Spc7 kinetocho 40.5 5.2E+02 0.011 28.2 16.8 100 564-663 155-255 (312)
152 PF10146 zf-C4H2: Zinc finger- 40.3 3.8E+02 0.0083 28.2 11.5 26 598-623 18-43 (230)
153 TIGR03007 pepcterm_ChnLen poly 40.0 5.7E+02 0.012 28.5 18.2 38 614-651 256-293 (498)
154 KOG1265 Phospholipase C [Lipid 39.9 3.1E+02 0.0067 34.6 12.0 43 563-605 1114-1156(1189)
155 TIGR02680 conserved hypothetic 39.6 9.8E+02 0.021 31.1 19.0 14 346-359 139-152 (1353)
156 PF13945 NST1: Salt tolerance 38.9 98 0.0021 31.8 6.9 69 555-628 105-175 (190)
157 KOG0163 Myosin class VI heavy 38.5 9E+02 0.02 30.4 15.3 15 344-358 668-682 (1259)
158 KOG2751 Beclin-like protein [S 38.3 6.4E+02 0.014 29.3 13.5 108 504-621 104-223 (447)
159 PRK04778 septation ring format 38.0 7.1E+02 0.015 29.0 17.6 46 547-592 292-339 (569)
160 PRK10884 SH3 domain-containing 37.4 1.9E+02 0.0041 29.8 8.7 27 565-595 85-111 (206)
161 KOG2072 Translation initiation 37.1 4.5E+02 0.0099 32.9 12.7 28 528-555 726-753 (988)
162 cd00187 TOP4c DNA Topoisomeras 36.9 4.7E+02 0.01 30.0 12.4 48 624-672 390-437 (445)
163 KOG0999 Microtubule-associated 36.8 8.4E+02 0.018 29.5 18.6 42 570-611 107-151 (772)
164 KOG0994 Extracellular matrix g 36.8 1.1E+03 0.024 31.0 20.4 21 641-661 1697-1717(1758)
165 PLN02372 violaxanthin de-epoxi 36.3 3.9E+02 0.0084 30.9 11.4 12 610-621 430-441 (455)
166 KOG0018 Structural maintenance 36.3 1.1E+03 0.023 30.6 16.7 99 563-669 234-332 (1141)
167 KOG0971 Microtubule-associated 36.2 1E+03 0.022 30.4 15.9 101 535-650 419-542 (1243)
168 PF12126 DUF3583: Protein of u 36.1 5.9E+02 0.013 28.3 12.4 17 654-673 104-120 (324)
169 KOG2264 Exostosin EXT1L [Signa 36.1 1.3E+02 0.0029 35.9 8.1 66 571-671 80-145 (907)
170 PTZ00491 major vault protein; 35.9 3.9E+02 0.0086 33.2 12.2 36 575-611 743-778 (850)
171 KOG0979 Structural maintenance 35.7 3.7E+02 0.0081 34.1 11.9 15 635-649 690-704 (1072)
172 PF10481 CENP-F_N: Cenp-F N-te 35.5 6.4E+02 0.014 27.9 12.4 67 604-670 62-132 (307)
173 KOG4809 Rab6 GTPase-interactin 35.5 1.9E+02 0.0042 34.3 9.2 97 556-652 156-283 (654)
174 KOG4809 Rab6 GTPase-interactin 35.4 6.1E+02 0.013 30.5 13.0 53 608-660 517-569 (654)
175 KOG4674 Uncharacterized conser 35.0 9E+02 0.02 32.8 15.6 94 570-665 654-749 (1822)
176 KOG0982 Centrosomal protein Nu 34.6 8.1E+02 0.018 28.7 17.1 17 519-535 241-257 (502)
177 COG4942 Membrane-bound metallo 34.6 7.7E+02 0.017 28.4 19.9 27 625-651 170-196 (420)
178 PF10211 Ax_dynein_light: Axon 34.5 5E+02 0.011 26.2 15.0 16 547-562 83-98 (189)
179 PF09727 CortBP2: Cortactin-bi 33.9 5E+02 0.011 26.9 11.0 14 431-444 6-19 (192)
180 PRK12705 hypothetical protein; 33.9 8.4E+02 0.018 28.6 17.2 15 575-589 68-82 (508)
181 KOG0239 Kinesin (KAR3 subfamil 33.8 4.6E+02 0.0099 31.7 12.2 51 620-670 242-292 (670)
182 TIGR03545 conserved hypothetic 33.7 2.7E+02 0.0059 32.7 10.2 14 351-364 29-42 (555)
183 PF03961 DUF342: Protein of un 33.4 3.3E+02 0.0072 30.5 10.5 37 592-628 372-408 (451)
184 PRK13182 racA polar chromosome 33.2 2.7E+02 0.0059 28.0 8.9 31 599-630 106-136 (175)
185 PF09787 Golgin_A5: Golgin sub 33.1 8.1E+02 0.018 28.2 14.8 10 663-672 411-420 (511)
186 PRK11519 tyrosine kinase; Prov 32.9 9.3E+02 0.02 28.8 16.9 17 501-517 233-249 (719)
187 KOG4572 Predicted DNA-binding 32.7 9.2E+02 0.02 30.6 14.2 72 557-628 962-1043(1424)
188 smart00434 TOP4c DNA Topoisome 32.5 3.3E+02 0.0072 31.0 10.4 45 622-667 398-442 (445)
189 PF14992 TMCO5: TMCO5 family 32.1 5.6E+02 0.012 28.1 11.4 76 585-660 53-136 (280)
190 KOG4403 Cell surface glycoprot 32.0 5.3E+02 0.012 30.2 11.6 10 571-580 276-285 (575)
191 KOG0933 Structural maintenance 32.0 1.2E+03 0.027 30.0 19.2 56 604-659 321-386 (1174)
192 PF13870 DUF4201: Domain of un 31.8 5E+02 0.011 25.4 11.6 47 583-629 48-94 (177)
193 cd07673 F-BAR_FCHO2 The F-BAR 31.7 3.3E+02 0.0071 28.8 9.6 74 595-668 29-124 (269)
194 PF09403 FadA: Adhesion protei 31.5 4.9E+02 0.011 25.2 13.3 23 640-662 100-122 (126)
195 PF08703 PLC-beta_C: PLC-beta 30.9 4.7E+02 0.01 27.0 10.1 45 563-607 91-135 (185)
196 PF06637 PV-1: PV-1 protein (P 30.7 6.2E+02 0.013 29.2 11.7 95 573-671 281-387 (442)
197 PF00521 DNA_topoisoIV: DNA gy 30.6 8.2E+02 0.018 27.5 14.0 42 623-665 375-416 (426)
198 PF15066 CAGE1: Cancer-associa 30.4 5.8E+02 0.012 30.0 11.7 58 612-672 358-418 (527)
199 PRK10361 DNA recombination pro 30.0 9.5E+02 0.021 28.1 19.3 32 600-631 90-121 (475)
200 PRK07720 fliJ flagellar biosyn 29.7 4.8E+02 0.01 24.6 13.3 72 600-671 25-102 (146)
201 KOG2072 Translation initiation 29.5 4.4E+02 0.0096 33.0 11.1 17 84-100 307-323 (988)
202 PF12325 TMF_TATA_bd: TATA ele 29.3 5.1E+02 0.011 24.8 11.4 60 590-650 46-106 (120)
203 COG3264 Small-conductance mech 28.8 5.6E+02 0.012 31.9 11.9 10 525-534 59-68 (835)
204 cd07665 BAR_SNX1 The Bin/Amphi 28.8 1.6E+02 0.0035 30.9 6.7 58 506-563 166-228 (234)
205 PF09730 BicD: Microtubule-ass 28.8 9.8E+02 0.021 29.4 13.8 54 571-624 35-88 (717)
206 KOG0964 Structural maintenance 28.1 1.4E+03 0.031 29.5 17.2 33 611-643 784-819 (1200)
207 PF03980 Nnf1: Nnf1 ; InterPr 27.9 4.6E+02 0.0099 23.7 12.2 47 551-598 5-51 (109)
208 PF09731 Mitofilin: Mitochondr 27.7 9.8E+02 0.021 27.5 20.6 11 524-534 261-271 (582)
209 cd07682 F-BAR_srGAP2 The F-BAR 27.6 8.3E+02 0.018 26.6 12.5 108 555-665 22-137 (263)
210 cd07623 BAR_SNX1_2 The Bin/Amp 27.0 1.6E+02 0.0035 30.0 6.3 35 507-541 157-194 (224)
211 PF05917 DUF874: Helicobacter 27.0 3.8E+02 0.0083 29.8 9.2 28 585-612 149-176 (398)
212 cd07664 BAR_SNX2 The Bin/Amphi 26.3 1.9E+02 0.0041 30.2 6.7 57 507-563 167-228 (234)
213 KOG0804 Cytoplasmic Zn-finger 26.0 5.6E+02 0.012 30.0 10.6 27 606-632 372-398 (493)
214 PF05262 Borrelia_P83: Borreli 25.9 1.1E+03 0.024 27.6 13.3 25 467-491 119-143 (489)
215 PF04568 IATP: Mitochondrial A 25.8 1.1E+02 0.0025 28.5 4.5 15 609-623 69-83 (100)
216 PRK13428 F0F1 ATP synthase sub 25.7 1E+03 0.022 27.1 16.0 17 614-630 114-130 (445)
217 TIGR01843 type_I_hlyD type I s 25.5 8.4E+02 0.018 26.0 15.0 65 564-629 152-220 (423)
218 PTZ00421 coronin; Provisional 25.4 1E+02 0.0022 35.2 4.9 32 640-672 453-484 (493)
219 COG0419 SbcC ATPase involved i 25.3 1.3E+03 0.029 28.3 18.6 23 606-628 285-307 (908)
220 KOG0240 Kinesin (SMY1 subfamil 25.2 1.3E+03 0.028 28.0 14.5 50 606-655 436-485 (607)
221 KOG0980 Actin-binding protein 25.1 1.5E+03 0.033 28.8 20.5 156 510-668 392-557 (980)
222 TIGR01843 type_I_hlyD type I s 24.9 8.6E+02 0.019 25.9 19.7 8 528-535 88-95 (423)
223 cd07684 F-BAR_srGAP3 The F-BAR 24.8 9.2E+02 0.02 26.2 12.8 107 555-664 22-136 (253)
224 PF15070 GOLGA2L5: Putative go 24.7 1.3E+03 0.028 27.8 16.8 46 559-608 111-156 (617)
225 PRK01558 V-type ATP synthase s 24.6 7.4E+02 0.016 25.0 13.8 7 547-553 36-42 (198)
226 KOG0163 Myosin class VI heavy 24.6 7.8E+02 0.017 30.9 11.8 92 567-668 915-1008(1259)
227 KOG4593 Mitotic checkpoint pro 24.5 1.4E+03 0.03 28.2 19.8 52 613-664 166-217 (716)
228 PF15346 ARGLU: Arginine and g 24.4 7.3E+02 0.016 24.9 15.7 20 568-587 74-93 (149)
229 PF03999 MAP65_ASE1: Microtubu 24.1 5.7E+02 0.012 30.1 10.7 91 519-614 262-362 (619)
230 PRK02292 V-type ATP synthase s 24.1 6.9E+02 0.015 24.5 10.4 27 544-570 27-56 (188)
231 PRK10361 DNA recombination pro 23.9 1.2E+03 0.026 27.3 19.9 27 571-597 100-126 (475)
232 COG4372 Uncharacterized protei 23.8 1.2E+03 0.026 27.2 13.5 7 502-508 37-43 (499)
233 PF06705 SF-assemblin: SF-asse 23.8 8.1E+02 0.018 25.2 20.8 16 654-669 204-219 (247)
234 PF00901 Orbi_VP5: Orbivirus o 23.8 1.3E+03 0.027 27.4 15.6 34 504-548 78-111 (508)
235 PRK09841 cryptic autophosphory 23.6 1.3E+03 0.029 27.6 15.1 10 326-335 89-98 (726)
236 PF06160 EzrA: Septation ring 23.4 1.2E+03 0.027 27.2 15.4 130 533-664 190-330 (560)
237 PF13514 AAA_27: AAA domain 23.2 1.6E+03 0.034 28.4 15.1 11 353-363 601-611 (1111)
238 PF03148 Tektin: Tektin family 23.1 1.1E+03 0.023 26.3 18.1 27 641-667 335-361 (384)
239 PF08340 DUF1732: Domain of un 23.1 4.6E+02 0.01 24.1 7.7 72 512-591 3-81 (87)
240 PLN03229 acetyl-coenzyme A car 22.6 1.3E+03 0.029 28.5 13.4 20 639-658 648-667 (762)
241 PF04576 Zein-binding: Zein-bi 22.6 6.4E+02 0.014 23.6 8.7 67 605-671 6-90 (94)
242 PF05667 DUF812: Protein of un 22.5 1.4E+03 0.03 27.4 19.1 24 641-664 455-478 (594)
243 PRK10869 recombination and rep 22.4 1.3E+03 0.028 27.0 15.6 88 559-646 204-302 (553)
244 KOG4466 Component of histone d 22.4 1.1E+03 0.023 26.1 12.5 84 555-653 27-110 (291)
245 KOG0243 Kinesin-like protein [ 22.2 1E+03 0.022 30.6 12.5 96 577-672 404-515 (1041)
246 KOG0994 Extracellular matrix g 22.0 2E+03 0.042 29.0 18.0 23 640-662 1710-1732(1758)
247 PRK01156 chromosome segregatio 22.0 1.5E+03 0.032 27.5 14.9 7 504-510 458-464 (895)
248 cd07651 F-BAR_PombeCdc15_like 21.8 8.6E+02 0.019 24.7 18.1 39 533-572 67-105 (236)
249 PRK03963 V-type ATP synthase s 21.7 7.7E+02 0.017 24.2 16.0 56 575-631 45-100 (198)
250 TIGR00219 mreC rod shape-deter 21.4 1.7E+02 0.0037 31.2 5.4 10 582-591 71-80 (283)
251 PF11802 CENP-K: Centromere-as 21.4 3E+02 0.0065 29.9 7.1 55 571-625 90-144 (268)
252 PF07780 Spb1_C: Spb1 C-termin 21.3 8.6E+02 0.019 25.6 10.2 102 460-583 63-164 (215)
253 KOG0239 Kinesin (KAR3 subfamil 21.2 1.5E+03 0.033 27.5 16.3 18 579-596 225-242 (670)
254 PRK05892 nucleoside diphosphat 21.0 4E+02 0.0086 26.3 7.4 55 579-633 13-75 (158)
255 PF07956 DUF1690: Protein of U 20.9 8E+02 0.017 24.1 9.4 32 504-539 22-53 (142)
256 PF05622 HOOK: HOOK protein; 20.9 33 0.00071 40.5 0.0 17 525-541 456-472 (713)
257 cd08915 V_Alix_like Protein-in 20.7 1.1E+03 0.023 25.4 11.6 25 514-538 7-32 (342)
258 KOG4613 Predicted component of 20.7 1.1E+02 0.0024 29.7 3.4 79 559-652 30-108 (133)
259 PF05911 DUF869: Plant protein 20.3 1.7E+03 0.037 27.6 17.9 76 592-672 117-204 (769)
260 PF07851 TMPIT: TMPIT-like pro 20.3 1.1E+03 0.024 26.3 11.3 89 558-663 3-91 (330)
261 PRK09841 cryptic autophosphory 20.1 1.1E+03 0.024 28.2 12.2 6 502-507 234-239 (726)
262 PF04889 Cwf_Cwc_15: Cwf15/Cwc 20.1 1.8E+02 0.0039 30.7 5.2 31 580-610 149-179 (244)
263 KOG1854 Mitochondrial inner me 20.0 1.3E+03 0.028 28.2 12.3 112 506-624 309-431 (657)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.93 E-value=1e-09 Score=83.75 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=31.3
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHH
Q 005852 387 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV 441 (674)
Q Consensus 387 AF~DV~~sdpyf-~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELA 441 (674)
.|+||+..+|+| .+|+.+++.|||.|+. +++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~-----------~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGYS-----------DGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS---T-----------TS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccCC-----------CCeECCCCCcCHHHhC
Confidence 499999999955 9999999999999972 3479999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=97.96 E-value=8e-06 Score=62.40 Aligned_cols=43 Identities=37% Similarity=0.468 Sum_probs=27.7
Q ss_pred CccccCCCCc-chHHHHHHHHhcCcccceecccCC-CccccCCCCCcHHHHH
Q 005852 465 GFIDIDKINP-DAWPALLADLTAGEQGIIALAFGC-TRLFQPDKPVTNAQAA 514 (674)
Q Consensus 465 ~F~DadkIs~-wA~~AVaadL~AGE~gII~~v~G~-tg~FqPkkPVTRAEAA 514 (674)
.|.|+..+++ |+ .+|...+.. ||| .|. ++.|+|+++|||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~~~---gi~---~G~~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLYQL---GII---SGYSDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHHHT---TSS------TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHHHc---CCc---ccCCCCeECCCCCcCHHHhC
Confidence 3999999987 77 888776655 465 553 4679999999999997
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.32 Score=57.58 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLRAEREV 595 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~ 595 (674)
.+....||++..++||.++.-| |||+.|.|.++
T Consensus 360 rerqEqErk~qlElekqLerQR-eiE~qrEEerk 392 (1118)
T KOG1029|consen 360 RERQEQERKAQLELEKQLERQR-EIERQREEERK 392 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4445678888888888887644 67777665443
No 4
>PRK00106 hypothetical protein; Provisional
Probab=95.06 E-value=2.5 Score=48.64 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---hcce
Q 005852 557 INESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM---SNKV 633 (674)
Q Consensus 557 i~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~---s~~~ 633 (674)
.+.-++.+++.||.+...-|+.+..-...|++-...=++....|-+.+..++...+.|..++.++++..+... .+-.
T Consensus 84 ~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a 163 (535)
T PRK00106 84 YREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555455555555555555555444444444444444444555555555555555444333221 1112
Q ss_pred ehhHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 005852 634 EISYEKER---INMLRKEAENENQEIARL---QYELEVERKALSM 672 (674)
Q Consensus 634 ~~~~Ek~~---l~kL~~~~e~~~~~~~~~---k~~LE~Ek~AL~m 672 (674)
.++.|+-+ ++++..++..+.-.+.+- +...+++++|-.|
T Consensus 164 ~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~i 208 (535)
T PRK00106 164 ALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDL 208 (535)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344433 555555555544444433 4455677776543
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=1.4 Score=52.52 Aligned_cols=83 Identities=28% Similarity=0.369 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHH
Q 005852 580 EEARQELERLRA---------------EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (674)
Q Consensus 580 ~~~~~ele~~r~---------------~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~k 644 (674)
|.||.|||+.|. .||++...++|.|- ..=.+.|.-|........++|.-=|+.|-.-|..|+.
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~--~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKK--KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 456666666553 24444455555443 2233445666666666677777777888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005852 645 LRKEAENENQEIARLQYELE 664 (674)
Q Consensus 645 L~~~~e~~~~~~~~~k~~LE 664 (674)
+.+.++-..-+|.+||..|.
T Consensus 477 ~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 77777766666666665553
No 6
>PRK12704 phosphodiesterase; Provisional
Probab=92.20 E-value=17 Score=41.75 Aligned_cols=63 Identities=29% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 624 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~ 624 (674)
+.+++..|.+...-|+.+..-...|++....=++....|-+.+..++...+.|..++.+++++
T Consensus 74 e~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455554444444444443333333344444444444444444444444433
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.94 E-value=19 Score=41.33 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 005852 642 INMLRKEAENENQEIA---RLQYELEVERKALS 671 (674)
Q Consensus 642 l~kL~~~~e~~~~~~~---~~k~~LE~Ek~AL~ 671 (674)
|+++..++..+--.+. ......+++++|-.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 186 (514)
T TIGR03319 154 LEEVEEEARHEAAKLIKEIEEEAKEEADKKAKE 186 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433332 12233455555543
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.94 E-value=9.8 Score=45.18 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEAR 583 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~ 583 (674)
+.=|++|.+||++...+|+.+.+-|
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776665544
No 9
>PRK00106 hypothetical protein; Provisional
Probab=91.25 E-value=13 Score=42.90 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 005852 607 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (674)
Q Consensus 607 ~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~ 655 (674)
++...+.|.+.+.+++.+.+.|...+-++-.-+..++++..+...+.+.
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333333333333344444443333333
No 10
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.56 E-value=25 Score=40.18 Aligned_cols=89 Identities=28% Similarity=0.381 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHH--cccchhHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Q 005852 507 PVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENAVS-----EHSALVAEVEKEINESFEKELSMEREKIDVV---- 575 (674)
Q Consensus 507 PVTRAEAAaaL~--sG~~~e~v~eEl~RlEAE~~a~~av~-----~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~v---- 575 (674)
.+++++-|+... .+..-+.+..||.++-..-..-.+.. ....++++.+.|+. .|..+|..=+++...+
T Consensus 156 A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~-~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 156 ALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAE-EWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345666665555 66777788888888875443322111 11223333333443 6777665444443333
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Q 005852 576 ------EKMAEEARQELERLRAEREVD 596 (674)
Q Consensus 576 ------ek~~~~~~~ele~~r~~re~e 596 (674)
+.-+..+..++..++.+=...
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555443333
No 11
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.99 E-value=15 Score=44.17 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=54.2
Q ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---hhhhhHHHH------------------
Q 005852 556 EINESFEKELS-MEREKIDVVEKMAE----EARQELERLRAEREVDKIAL---MKERAAIES------------------ 609 (674)
Q Consensus 556 di~~~~~~~l~-~Er~~~~~vek~~~----~~~~ele~~r~~re~e~~~l---lKeraa~e~------------------ 609 (674)
-.+++|+-+|. .||....++|++-+ +.|.|-.|+|.++|++...+ ||.+--...
T Consensus 834 ~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr 913 (1187)
T KOG0579|consen 834 NKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQR 913 (1187)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44567777774 68888888888755 45677788999999987543 333322221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHhhhcce
Q 005852 610 -----------EMEILSKLRREVEEQLESLMSNKV 633 (674)
Q Consensus 610 -----------e~~~L~~Lr~evde~~q~l~s~~~ 633 (674)
+++.+.+++.++|.||++++...-
T Consensus 914 ~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k 948 (1187)
T KOG0579|consen 914 KEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHK 948 (1187)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246678889999999999887543
No 12
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.54 E-value=11 Score=47.58 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=78.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 005852 542 AVSEHSALVAEVEKEINESFEKELSMER---EKIDVVEKMAEE-------------ARQELERLRAEREVDKIALMKERA 605 (674)
Q Consensus 542 av~~~~~l~~~~ekdi~~~~~~~l~~Er---~~~~~vek~~~~-------------~~~ele~~r~~re~e~~~llKera 605 (674)
|+-+|..|++|- -|++.-+-.=|.+=| +-|.+|-|-+.. .-.||--+|.+||||..-|.+|--
T Consensus 1105 am~ghar~~e~y-a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk 1183 (1320)
T PLN03188 1105 AMEGHARMLEQY-ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENK 1183 (1320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455566665222 156555555555444 445566555443 347999999999999988887753
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhhcceeh-hHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 005852 606 -----------AIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENEN-QEIARLQYEL 663 (674)
Q Consensus 606 -----------a~e~e~~~L~~Lr~evde~~q~l~s~~~~~-~~Ek~~l~kL~~~~e~~~-~~~~~~k~~L 663 (674)
||.+-=+||.+||+= |.--.++-+|... -+|-+++-|...++..|| .+|.-+|-.|
T Consensus 1184 ~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1184 SLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667999999963 3344566666544 356666777667777788 7888877766
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.06 E-value=46 Score=39.96 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=11.4
Q ss_pred cCCCCCccHHHHHHHHHH
Q 005852 344 VKPGDLCIRREYARWLVS 361 (674)
Q Consensus 344 F~Pn~pITRaEFArwLVR 361 (674)
|--+.+||+.++..+|-.
T Consensus 111 ~~n~~~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 111 YLNGQRVRLSEIHDFLAA 128 (1164)
T ss_pred EECCccccHHHHHHHHHH
Confidence 445567888777665543
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=88.76 E-value=50 Score=39.66 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 005852 352 RREYARW 358 (674)
Q Consensus 352 RaEFArw 358 (674)
|++|...
T Consensus 155 r~~~~~~ 161 (1164)
T TIGR02169 155 RRKIIDE 161 (1164)
T ss_pred HHHHHHH
Confidence 4444443
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.50 E-value=40 Score=44.52 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 604 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA 669 (674)
Q Consensus 604 raa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~A 669 (674)
-+.++....-|.+.|.+++++++.|.+. +..|++.+..|.+.+..--+.+.+++-.||-|++.
T Consensus 973 ~~~~~e~~~kL~kekk~lEe~~~~l~~~---l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 973 INSLDENISKLSKEKKELEERIRELQDD---LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445566666666666666553 45555555555555555555555666666666554
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.40 E-value=12 Score=40.14 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=14.4
Q ss_pred CCcCCCCCccHHHHHHHH
Q 005852 342 ADVKPGDLCIRREYARWL 359 (674)
Q Consensus 342 gtF~Pn~pITRaEFArwL 359 (674)
....+..+|+=.+|..++
T Consensus 6 ~~~~~~~~isL~~FL~~~ 23 (325)
T PF08317_consen 6 EDDEDYEPISLQDFLNMT 23 (325)
T ss_pred cccCCCCCcCHHHHHHHh
Confidence 455677889999999987
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.25 E-value=50 Score=39.43 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=2.5
Q ss_pred ccCCCC
Q 005852 428 FFLPES 433 (674)
Q Consensus 428 ~FkPDs 433 (674)
.|-|.+
T Consensus 574 ~~l~l~ 579 (1179)
T TIGR02168 574 TFLPLD 579 (1179)
T ss_pred EEeecc
Confidence 344433
No 18
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.24 E-value=23 Score=35.82 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005852 644 MLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 644 kL~~~~e~~~~~~~~~k~~LE 664 (674)
+++.+++..++.+..++..+.
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 19
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.15 E-value=55 Score=38.12 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH
Q 005852 570 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 649 (674)
Q Consensus 570 ~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~ 649 (674)
.+...+++-++++...+++++......-..++.+|..++.++..|..-+.++...+-.++++..=...=..-|++++..+
T Consensus 230 ~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~ 309 (650)
T TIGR03185 230 QEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQL 309 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHH
Confidence 44556666777777777777777777788888889999999999888888899999888888877666667777777777
Q ss_pred HHHHH
Q 005852 650 ENENQ 654 (674)
Q Consensus 650 e~~~~ 654 (674)
+.+++
T Consensus 310 ~~e~~ 314 (650)
T TIGR03185 310 QKEEQ 314 (650)
T ss_pred HHHHH
Confidence 66543
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.23 E-value=47 Score=39.70 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 005852 554 EKEINESFEKELSMEREKIDVV 575 (674)
Q Consensus 554 ekdi~~~~~~~l~~Er~~~~~v 575 (674)
|++-++.-|.+|..||....+-
T Consensus 500 E~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 4478889999999999655443
No 21
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.21 E-value=11 Score=40.54 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=19.0
Q ss_pred cccCCCCCcHHHHHHHHH--cccchhHHHHHHH
Q 005852 501 LFQPDKPVTNAQAAVALA--IGEASDAVNEELQ 531 (674)
Q Consensus 501 ~FqPkkPVTRAEAAaaL~--sG~~~e~v~eEl~ 531 (674)
.|+=-+.-+|.+|-.+=| +-..-+.+.+.|.
T Consensus 118 Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~ 150 (312)
T smart00787 118 QFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLD 150 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778888877766 4444455554444
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.04 E-value=60 Score=38.04 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLR 590 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r 590 (674)
..+|...+++-..++.-.+++....+.++
T Consensus 177 ~~eL~~~~ee~e~L~~~~kel~~~~e~l~ 205 (546)
T PF07888_consen 177 EAELEQEEEEMEQLKQQQKELTESSEELK 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444444444333
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.73 E-value=44 Score=41.71 Aligned_cols=150 Identities=22% Similarity=0.283 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHH--HHHHHHHH---HHHHHHHhHHHHHHHH
Q 005852 507 PVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEH--SALVAEVEK--EINESFEK---ELSMEREKIDVVEKMA 579 (674)
Q Consensus 507 PVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~av~~~--~~l~~~~ek--di~~~~~~---~l~~Er~~~~~vek~~ 579 (674)
.+-+.+...-=+++++++ |.+.+.++-.|--++...... ..+.+...+ |++.-+.+ .|..=+.+....+|..
T Consensus 303 ki~~~~~k~~~~r~k~te-iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I 381 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTE-IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI 381 (1074)
T ss_pred HHHHHHHHHHHHhhhhhH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666555 455666666555555544433 222221111 22222221 2223345556666666
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 005852 580 EEARQ----ELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (674)
Q Consensus 580 ~~~~~----ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~ 655 (674)
..+.. ++...+.+++.++.-|=++...++. ++.+||.|.++..+.+....-+-...+..+-.|++.+++....
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654 4566788888888888888888887 7889999999999999888888878888888888888888887
Q ss_pred HHHHH
Q 005852 656 IARLQ 660 (674)
Q Consensus 656 ~~~~k 660 (674)
|.+++
T Consensus 459 l~~lk 463 (1074)
T KOG0250|consen 459 LKDLK 463 (1074)
T ss_pred HHHHH
Confidence 77765
No 24
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.68 E-value=32 Score=34.85 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHH
Q 005852 582 ARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI 656 (674)
Q Consensus 582 ~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~ 656 (674)
.+..+++++..-+..+..+-+-|.+++..++.|......+......+......+..-++++..+...+...+..+
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444422222222222233333333334444445555554444333
No 25
>PRK12704 phosphodiesterase; Provisional
Probab=85.57 E-value=43 Score=38.57 Aligned_cols=6 Identities=50% Similarity=0.817 Sum_probs=2.7
Q ss_pred HHHHHH
Q 005852 664 EVERKA 669 (674)
Q Consensus 664 E~Ek~A 669 (674)
+++++|
T Consensus 185 ~a~~~a 190 (520)
T PRK12704 185 EADKKA 190 (520)
T ss_pred HHHHHH
Confidence 444444
No 26
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.23 E-value=48 Score=38.13 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 602 KERAAIESEMEILSKLRREVEEQLESLM 629 (674)
Q Consensus 602 Keraa~e~e~~~L~~Lr~evde~~q~l~ 629 (674)
+.+..++.+.+.|...+.+++++.+.+.
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.15 E-value=40 Score=32.98 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 005852 526 VNEELQRIEAE 536 (674)
Q Consensus 526 v~eEl~RlEAE 536 (674)
|.++|.|.+.+
T Consensus 8 v~~kLK~~~~e 18 (140)
T PF10473_consen 8 VEEKLKESESE 18 (140)
T ss_pred HHHHHHHHHHh
Confidence 44555555533
No 28
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=84.42 E-value=11 Score=46.68 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=24.2
Q ss_pred cccCCCCCcHHHHHHHHHcccchhHHHHHHHHHHHHHHHHH
Q 005852 501 LFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAEN 541 (674)
Q Consensus 501 ~FqPkkPVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~ 541 (674)
...|..-.|+-.|.+-.+.|+.... ..|-.|+|.|+.-+.
T Consensus 409 ~~~~s~~~~~~~~~~g~~g~r~eke-~~ER~r~e~e~~er~ 448 (1021)
T PTZ00266 409 RKYPQDGATHCHAVNGHYGGRVDKD-HAERARIEKENAHRK 448 (1021)
T ss_pred cccccccccccccccCccccccchh-HHHHHHHHHHHHHHH
Confidence 3446666666666666666665332 356777777766544
No 29
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.06 E-value=47 Score=42.04 Aligned_cols=53 Identities=30% Similarity=0.352 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 616 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 616 ~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
.|..|+.++++-| ++-+...++++.+|+.........+.+|++-||.|..|=.
T Consensus 721 ~~~~~i~~e~e~L---~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 721 NLLLEIEAELEYL---SNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHHHHHH---hhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555554 4557777899999999999999999999999999987743
No 30
>PRK12705 hypothetical protein; Provisional
Probab=83.66 E-value=94 Score=36.09 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeh
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 635 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~ 635 (674)
.++.-.+++++..|......|+.+......|++-...=++....|-+.+..+..+.+.|..+..+....|++++.-..+=
T Consensus 63 ~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~e 142 (508)
T PRK12705 63 RERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ 142 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 34444556666666666666666666666666655555555566666777777777777777777777788776644322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q 005852 636 SYEKERINMLRKEAENENQEIAR---LQYELEVERKALSM 672 (674)
Q Consensus 636 ~~Ek~~l~kL~~~~e~~~~~~~~---~k~~LE~Ek~AL~m 672 (674)
.. +.-++++..++..+--.+.+ -+...+++++|-.+
T Consensus 143 ak-~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~A~~i 181 (508)
T PRK12705 143 AR-KLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNI 181 (508)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12233333333333222221 23345677777554
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.61 E-value=40 Score=32.76 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=14.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLR 590 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r 590 (674)
.+|+..++++..+++..+...+..+...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555555555555555444444444
No 32
>PRK11637 AmiB activator; Provisional
Probab=83.40 E-value=78 Score=34.96 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccee
Q 005852 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 634 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~ 634 (674)
+...+.+|+..+.+-++.+..+-..++.++.++.-|...+.|-...++.|..++.+
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555444333
No 33
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.38 E-value=28 Score=36.32 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHH
Q 005852 564 ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERIN 643 (674)
Q Consensus 564 ~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~ 643 (674)
.|..=|.+..+++|+..+.+.|++.++.+. +-+.+|-||+..+..|+-.+..-=..|..-...| +.+.-..+.+| .
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~l--E~iIkqa~~er-~ 77 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTL--ENIIKQAESER-N 77 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-H
Confidence 455668899999999999999999988876 6666666666666666544333222222222221 11111112221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 644 MLRKEAENENQEIARLQYELEVERKA 669 (674)
Q Consensus 644 kL~~~~e~~~~~~~~~k~~LE~Ek~A 669 (674)
+.+..+...++++..+|.+...=|+-
T Consensus 78 ~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 78 KRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665544443
No 34
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.24 E-value=1e+02 Score=41.16 Aligned_cols=78 Identities=27% Similarity=0.265 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 005852 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 633 (674)
Q Consensus 554 ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~ 633 (674)
|++.-+-=++.+..++.+..++|+.+.+....++.+ ++.+..+=+++-.++.+.+.|.....+++.+++.|..++.
T Consensus 885 e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~----ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~ 960 (1930)
T KOG0161|consen 885 EKENLAEAEELLERLRAEKQELEKELKELKERLEEE----EEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKN 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666655555554433 2333344444444445555555555555666665555554
Q ss_pred eh
Q 005852 634 EI 635 (674)
Q Consensus 634 ~~ 635 (674)
..
T Consensus 961 ~~ 962 (1930)
T KOG0161|consen 961 AA 962 (1930)
T ss_pred HH
Confidence 33
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.95 E-value=74 Score=37.29 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHhhhcceehhHHHHHHHHH
Q 005852 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE---QLESLMSNKVEISYEKERINML 645 (674)
Q Consensus 569 r~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde---~~q~l~s~~~~~~~Ek~~l~kL 645 (674)
|.++..+..-.+.+-.-|-+.|.+|++=-..|-|++ +|=+=.|+..|+|+-| ++.-+--+|-+...|++-|-.-
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~---D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~y 446 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK---DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEY 446 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666777776666666665 3333345555555444 4445555666666666655555
Q ss_pred HHHHHHHHHHHHHHH
Q 005852 646 RKEAENENQEIARLQ 660 (674)
Q Consensus 646 ~~~~e~~~~~~~~~k 660 (674)
-..++.+.+.+.+.+
T Consensus 447 i~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 447 IERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHhhhhh
Confidence 555555555554443
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.47 E-value=96 Score=34.69 Aligned_cols=14 Identities=0% Similarity=0.313 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHHh
Q 005852 350 CIRREYARWLVSAS 363 (674)
Q Consensus 350 ITRaEFArwLVRAl 363 (674)
.++.+|..+|...+
T Consensus 110 ~~~~~~~~~i~~~~ 123 (562)
T PHA02562 110 ASSKDFQKYFEQML 123 (562)
T ss_pred ccHHHHHHHHHHHH
Confidence 35667777776643
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.35 E-value=1.1e+02 Score=35.21 Aligned_cols=104 Identities=27% Similarity=0.270 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005852 548 ALVAEVEKEINESFEKELSM---EREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 624 (674)
Q Consensus 548 ~l~~~~ekdi~~~~~~~l~~---Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~ 624 (674)
..+..+++++..+=..++.. ++.....+...+..+..||+..+..=++-+.+...=|..+++=+-.|-+.|.++..+
T Consensus 249 ~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~l 328 (522)
T PF05701_consen 249 AELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERL 328 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555655 456666667778888888888888888888888777888888777788888888887
Q ss_pred HHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 625 LESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 625 ~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
-+++..-.+.|..=+..|.+++.+++.
T Consensus 329 ke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 329 KEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 777777666666555555565555544
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.30 E-value=57 Score=38.22 Aligned_cols=114 Identities=28% Similarity=0.301 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHHHH
Q 005852 551 AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERL---RAEREVDKIALMKERAAIESEMEIL----SKLRREVEE 623 (674)
Q Consensus 551 ~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~---r~~re~e~~~llKeraa~e~e~~~L----~~Lr~evde 623 (674)
+.++.||.+.|+ +++.=|.+-...+|.+..++.++-.. =.+-+.+..-+....+.|+.+..-| .+|+.++..
T Consensus 109 a~~e~ei~kl~~-e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~ 187 (546)
T KOG0977|consen 109 AKLEIEITKLRE-ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR 187 (546)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444566766665 33333444444444444443333211 1122333333344444555443222 223333333
Q ss_pred HHHHhhhcceehhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 005852 624 QLESLMSNKVEISYEKERINMLRKEAENEN----QEIARLQYELEV 665 (674)
Q Consensus 624 ~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~----~~~~~~k~~LE~ 665 (674)
+-..|--+.+--..=+.++|.|+.+|.+.. ++|.+++.....
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR 233 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 332222222222233455666666666655 555555554443
No 39
>PRK09039 hypothetical protein; Validated
Probab=81.29 E-value=50 Score=35.98 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=9.6
Q ss_pred cchhHHHHHHHHHHHH
Q 005852 521 EASDAVNEELQRIEAE 536 (674)
Q Consensus 521 ~~~e~v~eEl~RlEAE 536 (674)
..-....+||.+++++
T Consensus 46 ~~i~~~~~eL~~L~~q 61 (343)
T PRK09039 46 REISGKDSALDRLNSQ 61 (343)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3344556677777765
No 40
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=81.06 E-value=64 Score=32.42 Aligned_cols=95 Identities=25% Similarity=0.352 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005852 532 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 611 (674)
Q Consensus 532 RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~ 611 (674)
+.||++.-..+...--+-. ..++.-++.++..-|......|+-+..--..|++....=++....|-+.+..+..++
T Consensus 44 ~~eAe~~~ke~~~eakee~----~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 44 EREAEAIKKEAELEAKEEA----QKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555544321111 255666667776666666666666555555555554444444444555555555555
Q ss_pred HHHHHHHHHHHH-------HHHHhhh
Q 005852 612 EILSKLRREVEE-------QLESLMS 630 (674)
Q Consensus 612 ~~L~~Lr~evde-------~~q~l~s 630 (674)
+.|-.++.+++. .|++++.
T Consensus 120 ~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 120 EELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555555555444 6666654
No 41
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.99 E-value=34 Score=39.19 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005852 523 SDAVNEELQRIE-AESAAENAVSEHSAL--------------VAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 587 (674)
Q Consensus 523 ~e~v~eEl~RlE-AE~~a~~av~~~~~l--------------~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele 587 (674)
.+-+.+|+.||. +|+..+..-.+...| +..+.+.+...++.++..=.++...+.-.++++..+|.
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~ 290 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQ 290 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777776 666655544443322 22223344443555555545555555555556655555
Q ss_pred HHH
Q 005852 588 RLR 590 (674)
Q Consensus 588 ~~r 590 (674)
+..
T Consensus 291 ~~~ 293 (563)
T TIGR00634 291 NYL 293 (563)
T ss_pred HHH
Confidence 533
No 42
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.89 E-value=62 Score=36.42 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 530 LQRIEAESAAENAVSEH-SALVAEVEKEINESFEK-ELSMEREKIDVVEKMAEEARQELERLRAEREV 595 (674)
Q Consensus 530 l~RlEAE~~a~~av~~~-~~l~~~~ekdi~~~~~~-~l~~Er~~~~~vek~~~~~~~ele~~r~~re~ 595 (674)
+..|||++.++.--+++ ..|.+.+||+-+++-.. +...|..|.++.+|--.+ .-|+++|..++.
T Consensus 120 i~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~--~qLeeEk~RHeq 185 (561)
T KOG1103|consen 120 IKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLE--MQLEEEKKRHEQ 185 (561)
T ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 56789888887766666 66777778855443211 122233444444443333 344555544443
No 43
>PRK11637 AmiB activator; Provisional
Probab=80.89 E-value=96 Score=34.28 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHH
Q 005852 603 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 641 (674)
Q Consensus 603 eraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~ 641 (674)
.|..++.+++.|..-+.++..++..+...+.++..++..
T Consensus 178 ~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 178 TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433444444444444444444433333
No 44
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.47 E-value=1.1e+02 Score=34.88 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 005852 578 MAEEARQELERLRAEREVDKIALMKERAAIESEM--EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (674)
Q Consensus 578 ~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~--~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~ 655 (674)
+.++.+++|...+.+.+++....++++-.-|+.. .-|..|+..|.++ +..+..+.++..+..+++.|..-+..=...
T Consensus 342 ~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~l-e~~~~~~~~~~~~~~~~~~l~~a~~~l~~~ 420 (582)
T PF09731_consen 342 HEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKAL-EEALDARSEAEDENRRAQQLWLAVDALKSA 420 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666554444432 2245555555543 334445566666677777776666554444
Q ss_pred HHHH
Q 005852 656 IARL 659 (674)
Q Consensus 656 ~~~~ 659 (674)
+..-
T Consensus 421 l~~~ 424 (582)
T PF09731_consen 421 LDSG 424 (582)
T ss_pred HHcC
Confidence 4433
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.24 E-value=1.5e+02 Score=37.13 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.8
Q ss_pred CCcCCCCCccHHHHHHHHHHH
Q 005852 342 ADVKPGDLCIRREYARWLVSA 362 (674)
Q Consensus 342 gtF~Pn~pITRaEFArwLVRA 362 (674)
.+|==+..|++.++..+|..+
T Consensus 111 ~Y~INg~~~~~~dI~~l~~~~ 131 (1163)
T COG1196 111 EYYINGEKVRLKDIQDLLADS 131 (1163)
T ss_pred EEEECCcEeeHHHHHHHHHhc
Confidence 467778899999988887665
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.21 E-value=79 Score=32.90 Aligned_cols=115 Identities=23% Similarity=0.352 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005852 551 AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE---VDKIALMKERAAIESEMEILSKLRREVEEQLES 627 (674)
Q Consensus 551 ~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re---~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~ 627 (674)
.....|+..+|..++..=+........-+..++.|+.++|..-. .++..+-...++++.+...|- .+.+...+.
T Consensus 183 ~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le---~~~~~~~~~ 259 (312)
T PF00038_consen 183 QKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE---QRLDEEREE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH---HHHHHHHHH
Confidence 34455788888888777666666666666777777766665432 333333344444444443332 222222222
Q ss_pred hhhcceehhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q 005852 628 LMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALS 671 (674)
Q Consensus 628 l~s~~~~~~~Ek~~l~kL~~~~e---~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
+-.. |..=...|.+|+.+++ .+.+.+.++|--|+.|..+.+
T Consensus 260 ~~~~---i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 260 YQAE---IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1111 1111233455555554 345889999999999998765
No 47
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=80.10 E-value=29 Score=43.15 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 005852 353 REYARWLVSA 362 (674)
Q Consensus 353 aEFArwLVRA 362 (674)
.++..+|.+.
T Consensus 269 ~eL~dLI~~~ 278 (1021)
T PTZ00266 269 KELNILIKNL 278 (1021)
T ss_pred HHHHHHHHHH
Confidence 3455544444
No 48
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=79.92 E-value=1.2e+02 Score=36.71 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHhhhcc-------eehhHHHHHHHHHHHHHH
Q 005852 581 EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ---LESLMSNK-------VEISYEKERINMLRKEAE 650 (674)
Q Consensus 581 ~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~---~q~l~s~~-------~~~~~Ek~~l~kL~~~~e 650 (674)
....||++....+++++..|... -.+.|..|++.+.+. |+.|-+.+ ..+..|.+-|.+-+++..
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~a------Hq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~ 210 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQA------HQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQ 210 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34567888888888887776543 334566666655443 33333333 233345555555555555
Q ss_pred HHHHH----HHHHHHHH
Q 005852 651 NENQE----IARLQYEL 663 (674)
Q Consensus 651 ~~~~~----~~~~k~~L 663 (674)
.+.+. +.+++.|+
T Consensus 211 ~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 211 EELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55554 56666665
No 49
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.78 E-value=45 Score=40.44 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 005852 555 KEINESFEKELSMEREKIDV 574 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~ 574 (674)
-+|+.||..++++||....+
T Consensus 31 ~~i~~fwspElkrer~~rke 50 (775)
T PF10174_consen 31 NSIKTFWSPELKRERALRKE 50 (775)
T ss_pred HhHhcccchhhHHHHHHHHH
Confidence 48999999999999976653
No 50
>PTZ00121 MAEBL; Provisional
Probab=79.20 E-value=1.4e+02 Score=39.04 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 005852 535 AESAAENA 542 (674)
Q Consensus 535 AE~~a~~a 542 (674)
+.+.+++|
T Consensus 1138 ~~Rr~Eea 1145 (2084)
T PTZ00121 1138 DARKAEEA 1145 (2084)
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.95 E-value=1.7e+02 Score=36.65 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHH
Q 005852 524 DAVNEELQRIEAES 537 (674)
Q Consensus 524 e~v~eEl~RlEAE~ 537 (674)
+.+.++|.+++++.
T Consensus 242 ~~~~~~l~~~~~~~ 255 (1163)
T COG1196 242 EELEEELSRLEEEL 255 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.78 E-value=33 Score=34.49 Aligned_cols=69 Identities=28% Similarity=0.418 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHH
Q 005852 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 658 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~ 658 (674)
..+...+|+.++..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|++|..++..-++++.+
T Consensus 85 i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 85 IEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444 4444444444444333333333443222 13567777777777777777655
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=76.45 E-value=1.4e+02 Score=38.12 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHH-------HHHH---HHHHHHHH
Q 005852 560 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEIL-------SKLR---REVEEQLE 626 (674)
Q Consensus 560 ~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e---~~~llKeraa~e~e~~~L-------~~Lr---~evde~~q 626 (674)
.-.+++..|+.+...++........||+.++.....- +..+.+.|+.++.....+ .+|| .+...|+|
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq 577 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQ 577 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHH
Confidence 3456777788888888888888888887774444333 333444555555322221 1222 23333444
Q ss_pred HhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 627 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 627 ~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
.+.. +.....++++-|+......-++-..+++++|+++
T Consensus 578 ~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~ 615 (1317)
T KOG0612|consen 578 QELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKER 615 (1317)
T ss_pred HHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 4444445555554444444444444555555444
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=75.80 E-value=2.3e+02 Score=35.86 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=6.1
Q ss_pred CccHHHHHHHHH
Q 005852 349 LCIRREYARWLV 360 (674)
Q Consensus 349 pITRaEFArwLV 360 (674)
..-+.++..||-
T Consensus 222 ~~~~~~i~~W~~ 233 (1201)
T PF12128_consen 222 RLKKNDIDDWLR 233 (1201)
T ss_pred hcchhhHHHHHH
Confidence 344455555554
No 55
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.47 E-value=9.2 Score=45.73 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHH
Q 005852 577 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 640 (674)
Q Consensus 577 k~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~ 640 (674)
.+.+.|+.-+...+.+-++-+..|-++|..++.+++.+.+++.|++++.++|-.+.-++-.+++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666666666666666666666666666666666555554444433
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.77 E-value=1.9e+02 Score=37.04 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005852 610 EMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 610 e~~~L~~Lr~evde~~q~l~s 630 (674)
+.+-|..-.-.+.|.|.++.+
T Consensus 392 ~~~~~e~~~vk~~E~lK~~~~ 412 (1293)
T KOG0996|consen 392 KFQDLEREDVKREEKLKRLTS 412 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443
No 57
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.05 E-value=1.2e+02 Score=31.74 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHH
Q 005852 608 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERIN 643 (674)
Q Consensus 608 e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~ 643 (674)
+.+.+.|-.-+.+++++.++|......-..|+.+|.
T Consensus 46 eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 46 EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554444444444433
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.81 E-value=1.8e+02 Score=33.69 Aligned_cols=100 Identities=19% Similarity=0.252 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhh--------hHHHHHHHHHHHHHH
Q 005852 550 VAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIA--LMKER--------AAIESEMEILSKLRR 619 (674)
Q Consensus 550 ~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~--llKer--------aa~e~e~~~L~~Lr~ 619 (674)
+..+++.|...++ .|..|..-...|++........|...+..-..-..+ .|+++ ..+..=.+-|..|..
T Consensus 284 ~~~i~~~Id~Lyd-~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~ 362 (569)
T PRK04778 284 NEEIQERIDQLYD-ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK 362 (569)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence 3344556666654 556666555566655555544444444332222222 22222 012222334666667
Q ss_pred HHHHHHHHhhhcceehhHHHHHHHHHHHHHH
Q 005852 620 EVEEQLESLMSNKVEISYEKERINMLRKEAE 650 (674)
Q Consensus 620 evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e 650 (674)
.+++..+.+....+.|+.=++++++|.++++
T Consensus 363 ~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 363 QYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666666655443
No 59
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=73.26 E-value=1e+02 Score=37.04 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=49.8
Q ss_pred cccchhHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHH
Q 005852 519 IGEASDAVNEELQRIE--AESAAENAVSEHSALVAEVEK--EINESFEKELSMEREKIDVVEKMAEEA---RQELERLRA 591 (674)
Q Consensus 519 sG~~~e~v~eEl~RlE--AE~~a~~av~~~~~l~~~~ek--di~~~~~~~l~~Er~~~~~vek~~~~~---~~ele~~r~ 591 (674)
++-..+...|-|+||| .|++.-+.-.--....||-|| |+.-. |..-|.+-.+-|.|++.- +.+||--|-
T Consensus 102 s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~c----ie~kr~kLnatEEmLQqellsrtsLETqKl 177 (861)
T KOG1899|consen 102 SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETC----IEEKRNKLNATEEMLQQELLSRTSLETQKL 177 (861)
T ss_pred cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHH----HHHHHhhhchHHHHHHHHHHhhhhHHHHHh
Confidence 3445577889999999 455544433333445555555 55433 334466666677766642 345555555
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 005852 592 EREVDKIALMKERAAIESEM 611 (674)
Q Consensus 592 ~re~e~~~llKeraa~e~e~ 611 (674)
+--.|.-+|=-.+++||.|+
T Consensus 178 DLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHHhHHHHHHHHHHh
Confidence 54455444444456666444
No 60
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.00 E-value=1.8e+02 Score=33.31 Aligned_cols=60 Identities=17% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 572 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
....-.+|.+...++.+....-.+....|-..|+.|+.|++-|..+..|..++.++|.-.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~ 204 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQL 204 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666667777777778888888888887777777777766543
No 61
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=72.24 E-value=1.3e+02 Score=31.50 Aligned_cols=112 Identities=17% Similarity=0.299 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhhhHHHHHHHHHHHHHHHHHH
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIA------------LMKERAAIESEMEILSKLRREVEE 623 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~------------llKeraa~e~e~~~L~~Lr~evde 623 (674)
-+++.+..++...+..+...++-+..+..++.+.+.+...|..- +-.-++.++.....|-.|+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~ 207 (301)
T PF14362_consen 128 QVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDA 207 (301)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44446666777777777777777777777777666665555444 333355555556666666666666
Q ss_pred HHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 624 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 624 ~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
....|..... .++++++..+.....+.+....-..-+=.+-+||
T Consensus 208 ~~~~l~~~~~---~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al 251 (301)
T PF14362_consen 208 AIAALDAQIA---ARKARLDEARQAKVAEFQAIISANDGFLARLEAL 251 (301)
T ss_pred HHHHHHhhHH---HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHH
Confidence 6655543222 5566666666665555555443333344444444
No 62
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.68 E-value=19 Score=39.90 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 641 RINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
-|.|..-++-.+--++.++-|.|+
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~ 323 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLG 323 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHH
Confidence 344444444445555555555553
No 63
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=70.73 E-value=2e+02 Score=32.90 Aligned_cols=101 Identities=28% Similarity=0.357 Sum_probs=61.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 520 GEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIA 599 (674)
Q Consensus 520 G~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~ 599 (674)
|-..++|.+||..|- |-+++....- ..|..+..+|++ |.-+-|.+||=|-+.+|..+-++ -++ +..|.+-
T Consensus 259 ~~~l~aileeL~eIk-~~q~~Leesy-e~Lke~~krdy~-fi~etLQEERyR~erLEEqLNdl----teL---qQnEi~n 328 (455)
T KOG3850|consen 259 GAALDAILEELREIK-ETQALLEESY-ERLKEQIKRDYK-FIAETLQEERYRYERLEEQLNDL----TEL---QQNEIAN 328 (455)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHH----HHH---HHHHHHH
Confidence 334789999998775 3333333222 457777777875 67788999998887776654433 222 2333333
Q ss_pred HhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 005852 600 LMKERAAIESEMEILSKLR-REVEEQLESLMS 630 (674)
Q Consensus 600 llKeraa~e~e~~~L~~Lr-~evde~~q~l~s 630 (674)
|=.|.|.||.-+.-.+.=| ++|.|.++.+-+
T Consensus 329 LKqElasmeervaYQsyERaRdIqEalEscqt 360 (455)
T KOG3850|consen 329 LKQELASMEERVAYQSYERARDIQEALESCQT 360 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3236666666655555444 467777776643
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.01 E-value=39 Score=36.43 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 005852 586 LERLRAEREVDKIALMKERAAIESE 610 (674)
Q Consensus 586 le~~r~~re~e~~~llKeraa~e~e 610 (674)
|++++.+-.+++..|-++++.++.|
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~e 79 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQE 79 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444443
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.62 E-value=1.3e+02 Score=31.99 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 640 ERINMLRKEAENENQEIARLQYELEVERKA 669 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~A 669 (674)
+++++|..+++..+..+.+++-.+...+++
T Consensus 117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 117 EEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.55 E-value=47 Score=34.07 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 005852 570 EKIDVVEKMAEEARQELERLRAE 592 (674)
Q Consensus 570 ~~~~~vek~~~~~~~ele~~r~~ 592 (674)
.+..++|+-+.+++.+|.+.+.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566666666665544
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.46 E-value=1.6e+02 Score=37.00 Aligned_cols=93 Identities=29% Similarity=0.390 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhH--HHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005852 559 ESFEKELSMEREKI--DVVE---KMAEEARQELERLRAEREVDK-------IALMKERAAIESEMEILSKLRREVEEQLE 626 (674)
Q Consensus 559 ~~~~~~l~~Er~~~--~~ve---k~~~~~~~ele~~r~~re~e~-------~~llKeraa~e~e~~~L~~Lr~evde~~q 626 (674)
+..|+||.+||--- .+|| ...++.-.+||=||+|.++-= ..-+| .+|-|++ +|| +
T Consensus 316 aTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk---qlEqqN~---rLK-------d 382 (1243)
T KOG0971|consen 316 ATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK---QLEQQNA---RLK-------D 382 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH---HHHHHHH---HHH-------H
Confidence 45678888888432 2222 233445556666776665531 00111 1333332 112 2
Q ss_pred HhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 627 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 627 ~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
.|.--|=--+.||+-.|||++++|.+|.++..|+..-|
T Consensus 383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE 420 (1243)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222333466889999999999999999988876544
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.24 E-value=3.2e+02 Score=34.72 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhH
Q 005852 556 EINESFEKELSMEREKI 572 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~ 572 (674)
+....|.+.+..|.++.
T Consensus 395 s~Ee~~SK~leleke~K 411 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHK 411 (1195)
T ss_pred hHHHHHHHHHHHHHHhH
Confidence 88899999888888544
No 69
>PTZ00121 MAEBL; Provisional
Probab=69.02 E-value=3.3e+02 Score=36.11 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=19.2
Q ss_pred cHHHHHHHHHcccchhHHHHHHHHHHHHHHHHH
Q 005852 509 TNAQAAVALAIGEASDAVNEELQRIEAESAAEN 541 (674)
Q Consensus 509 TRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~ 541 (674)
.|+.-|.--.+|+..++=.+|--|.|+++.+..
T Consensus 1087 ~~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee 1119 (2084)
T PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEE 1119 (2084)
T ss_pred ccchhhhHHHhhhHHHhhhhhhhhhHHHHHHHH
Confidence 355555555566666666666665555554443
No 70
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.60 E-value=1.2e+02 Score=29.67 Aligned_cols=105 Identities=26% Similarity=0.298 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHhhhcceehhHHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIES---EMEILSKLRREVEEQLESLMSNKVEISYEK 639 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~---e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek 639 (674)
++|++=+.+..-++..++.+..||+...+.++.-....-..|+.++| |++++..=+.....-|..|.++|..+.-+=
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666655555444444444444333 333333333333444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 640 ERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
+..+.--++++..+....++=.++|.|+
T Consensus 90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333334444444545555555555554
No 71
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.46 E-value=1.8e+02 Score=35.31 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005852 610 EMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 610 e~~~L~~Lr~evde~~q~l~s 630 (674)
-.++|...|.|+++.+..|-.
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888853
No 72
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=68.42 E-value=1.6e+02 Score=30.77 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 624 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~ 624 (674)
++...|+.+|..=|..+..+-+--..+..++.+++.+-+.-+..+-++.+...+=...|..||.++|+-
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~ 115 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE 115 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 678888888888787777776666666666666666666555555555444444444556666666543
No 73
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.30 E-value=2.8e+02 Score=33.61 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHHcccchhHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005852 510 NAQAAVALAIGEASDAVNEE-LQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 572 (674)
Q Consensus 510 RAEAAaaL~sG~~~e~v~eE-l~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~ 572 (674)
-.|.-.+|. ++.+++++| |.|.+ .|+.+...|..++ +.+++-+.-+=.++..||+..
T Consensus 534 ~~E~l~lL~--~a~~vlreeYi~~~~---~ar~ei~~rv~~L-k~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 534 PQECLELLS--QATKVLREEYIEKQD---LAREEIQRRVKLL-KQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 788899998 67765 3666666664444 223344444445555555544
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.64 E-value=1.2e+02 Score=29.38 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 005852 549 LVAEVEKEINES 560 (674)
Q Consensus 549 l~~~~ekdi~~~ 560 (674)
.+.+.++++.++
T Consensus 89 ~l~~l~~el~~l 100 (191)
T PF04156_consen 89 QLQQLQEELDQL 100 (191)
T ss_pred HHHHHHHHHHHH
Confidence 334444555553
No 75
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.64 E-value=2.2e+02 Score=32.24 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005852 522 ASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA 582 (674)
Q Consensus 522 ~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~ 582 (674)
.-..+.+||.-+......-. .....|..+..+|+ .++-+.|.+||-|...+|..+.+.
T Consensus 213 ~l~~~~~el~eik~~~~~L~--~~~e~Lk~~~~~e~-~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLE--ESIEKLKEQYQREY-QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566777776654433211 12245666777888 488999999999998887665544
No 76
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.14 E-value=1.7e+02 Score=33.82 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEAR-----QELERL----RAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 626 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~-----~ele~~----r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q 626 (674)
=+|++|.+-=+-|.++.--++|+=+.+. .++.+. -.+-..++.-.=|=|+.|++=+--|.+...+--+-++
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888766667777777777644432 122211 1122222233334467777777788888888888899
Q ss_pred HhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 627 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 627 ~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
+++-+++-+--|-.|+|.++..-=.+.++++|.-++-|.=-+++
T Consensus 282 qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemd 325 (552)
T KOG2129|consen 282 QYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMD 325 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999998776666667788888766655444433
No 77
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.63 E-value=3.1e+02 Score=33.62 Aligned_cols=92 Identities=24% Similarity=0.319 Sum_probs=71.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHH
Q 005852 569 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 648 (674)
Q Consensus 569 r~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~ 648 (674)
++-.-+.+..++-...+++++|.+-+.-...+=|-.+.++.=.+.+.++..||.+|.+.+=--..+|.-=+.+|++|...
T Consensus 328 kesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 328 KESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888889999999999999999999999999999999999999999999988866666666556666666665
Q ss_pred HHHHHHHHHHHH
Q 005852 649 AENENQEIARLQ 660 (674)
Q Consensus 649 ~e~~~~~~~~~k 660 (674)
+..+-..+..++
T Consensus 408 l~ekd~ql~~~k 419 (775)
T PF10174_consen 408 LREKDRQLDEEK 419 (775)
T ss_pred HHHHHHHHHHHH
Confidence 554444444433
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=66.46 E-value=2.9e+02 Score=33.11 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELER 588 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~ 588 (674)
+.+.....++...++.+++...++.+
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~ 283 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRD 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 79
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.22 E-value=3.6e+02 Score=34.42 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q 005852 524 DAVNEELQRIEAESA 538 (674)
Q Consensus 524 e~v~eEl~RlEAE~~ 538 (674)
+-|.+|+..++++--
T Consensus 825 ~ele~ei~~~~~el~ 839 (1311)
T TIGR00606 825 QQVNQEKQEKQHELD 839 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554443
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.12 E-value=73 Score=38.41 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHHHHHHHHHHHhhh
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE-----SEMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e-----~e~~~L~~Lr~evde~~q~l~s 630 (674)
+++..- ++|..+|...++-..-++..+.|+++++.+-+++...+-++|..+. .-.++|..+|.|+++.+..|-.
T Consensus 512 ~~~~li-~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 512 EINVLI-EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 454443 4677777777777777777777777777777777777776665442 2356677777777777777754
No 81
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=66.02 E-value=27 Score=41.16 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHH
Q 005852 603 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 640 (674)
Q Consensus 603 eraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~ 640 (674)
||-.|+||+|-|-+-|-| +++|--+|+.|+.|+.
T Consensus 654 erlrle~qRQrLERErmE----rERLEreRM~ve~eRr 687 (940)
T KOG4661|consen 654 ERLRLERQRQRLERERME----RERLERERMKVEEERR 687 (940)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 445688888887766655 4577777888876654
No 82
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=65.49 E-value=3.3e+02 Score=33.44 Aligned_cols=70 Identities=26% Similarity=0.295 Sum_probs=46.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHHHHHHHHHHHHhhhcceehh
Q 005852 566 SMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME---------ILSKLRREVEEQLESLMSNKVEIS 636 (674)
Q Consensus 566 ~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~---------~L~~Lr~evde~~q~l~s~~~~~~ 636 (674)
..++.--.+|.-+.+++.+-+.. -||....+.|||-|+..|+. ++..+-.|-|||.-.|+.+--+.+
T Consensus 391 ~~~k~~~s~~ssl~~e~~QRva~----lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLS 466 (961)
T KOG4673|consen 391 LKRKSNESEVSSLREEYHQRVAT----LEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLS 466 (961)
T ss_pred HHHHhhcccccchHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 33444445555555555555443 35667788899988888876 344455678999999998877666
Q ss_pred HHH
Q 005852 637 YEK 639 (674)
Q Consensus 637 ~Ek 639 (674)
-++
T Consensus 467 K~q 469 (961)
T KOG4673|consen 467 KKQ 469 (961)
T ss_pred HHH
Confidence 554
No 83
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.26 E-value=3.8e+02 Score=34.05 Aligned_cols=118 Identities=26% Similarity=0.284 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005852 548 ALVAEVEKEINESFEK------ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREV 621 (674)
Q Consensus 548 ~l~~~~ekdi~~~~~~------~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~ev 621 (674)
..+..-+++.+..|.. +...=+.+...++.-+.+...++...+.+-...+..+-+++.+++.+.+.|......+
T Consensus 795 ~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 795 AEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777764 2222223344445555666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhhcceehh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 622 EEQLESLMSNKVEIS--YEKERINMLRKEAENENQEIARLQYELEV 665 (674)
Q Consensus 622 de~~q~l~s~~~~~~--~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~ 665 (674)
...+..|..-.+... .-...+..+..+++...+.+.++...+..
T Consensus 875 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 920 (1201)
T PF12128_consen 875 RDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKK 920 (1201)
T ss_pred HHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556633222111 11223445556666665555555555443
No 84
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=64.28 E-value=1.2e+02 Score=35.07 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHH
Q 005852 395 DPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVS 442 (674)
Q Consensus 395 dpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAv 442 (674)
+-.+++|..+.. ||.|||.. ++-|.+.+.-|=..++.
T Consensus 75 ~a~vdhI~nlrr--Iiagyl~~---------aygY~~~~a~~lA~fit 111 (489)
T PF05262_consen 75 NARVDHINNLRR--IIAGYLEA---------AYGYSDEDAETLATFIT 111 (489)
T ss_pred CCCccHHHHHHH--HHHHHHHH---------hcCCChhhHHHHHHHHH
Confidence 456888988866 88888753 33467766655555543
No 85
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.13 E-value=74 Score=33.19 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005852 525 AVNEELQRIE-------AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID 573 (674)
Q Consensus 525 ~v~eEl~RlE-------AE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~ 573 (674)
.+.+|+.|.+ .|.++++-.++|.+|+ ++|+-|-+.+-.+|+...
T Consensus 81 ~fr~Ev~r~~e~~~g~~ie~~~e~eaaE~~el~-----a~N~a~N~~~~~~R~~Rl 131 (227)
T KOG4691|consen 81 EFRSEVQRVHEARAGVLIERKAEKEAAEHRELM-----AWNQAENRRLHELRIARL 131 (227)
T ss_pred HHHHHHHHHHhhcchhHHHhhhhhHHHHHHHHH-----HHhHHHHHHHHHHHHHHH
Confidence 4667777754 4556666556666666 788899988777776543
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=63.90 E-value=2.3e+02 Score=33.48 Aligned_cols=99 Identities=25% Similarity=0.302 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceeh
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 635 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~ 635 (674)
-|+.+|+.+|..=|.-+.+..+--..+..|+-+++.+-.+-+.-+.| .-+.+.--|.++++.+-+|..-..++
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-------~~k~~~~~re~~~~~~~~l~~leAe~ 157 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK-------AEKERRGAREKLDDYLSRLSELEAEI 157 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHhhhhhhhhhHH
Confidence 58999999999888877777777666666666666554443333322 11222333445555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 636 SYEKERINMLRKEAENENQEIARLQY 661 (674)
Q Consensus 636 ~~Ek~~l~kL~~~~e~~~~~~~~~k~ 661 (674)
.+=|.++.+|..++..=..+..++..
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55555544444444433333333333
No 87
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.73 E-value=4e+02 Score=33.87 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 615 SKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 663 (674)
Q Consensus 615 ~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~L 663 (674)
.|+|.|+......+.+.+....+=+.-+..|.++++.+.+.+..+-..+
T Consensus 393 kwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si 441 (1200)
T KOG0964|consen 393 KWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSI 441 (1200)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3788899998888888887766666666666666555555554444333
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.51 E-value=2.2e+02 Score=30.70 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=17.5
Q ss_pred ccCCCCCcHHHHHHHHH--cccchhHHHHHHHH
Q 005852 502 FQPDKPVTNAQAAVALA--IGEASDAVNEELQR 532 (674)
Q Consensus 502 FqPkkPVTRAEAAaaL~--sG~~~e~v~eEl~R 532 (674)
|+=-+..+|.+|-.+=| +-.+-+.+.+.|.+
T Consensus 124 ~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~ 156 (325)
T PF08317_consen 124 FQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566777665555 55555555555543
No 89
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=63.04 E-value=2.1e+02 Score=30.24 Aligned_cols=87 Identities=13% Similarity=0.270 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005852 553 VEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNK 632 (674)
Q Consensus 553 ~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~ 632 (674)
....+.+.|...|...+.+...+.+.+......+-.-+.++.+.....+++|..- .-.+.|...+..++.+..+|....
T Consensus 155 ~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~-~~~~~l~~~~~~L~~l~~~l~~~~ 233 (319)
T PF02601_consen 155 LRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQ-AIQQKLQRKRQRLQNLSNRLKRQS 233 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3457778888888888888777777776666554233344444445555555433 233445555566666555665555
Q ss_pred eehhHHHH
Q 005852 633 VEISYEKE 640 (674)
Q Consensus 633 ~~~~~Ek~ 640 (674)
-....++.
T Consensus 234 ~~~~l~~~ 241 (319)
T PF02601_consen 234 PQQKLNQQ 241 (319)
T ss_pred hhhHHHHH
Confidence 44444443
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.18 E-value=1.6e+02 Score=38.40 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=9.4
Q ss_pred CCccHHHHHHHHHH
Q 005852 348 DLCIRREYARWLVS 361 (674)
Q Consensus 348 ~pITRaEFArwLVR 361 (674)
.++|..++-..+-.
T Consensus 146 ~~~ti~Elk~~i~e 159 (1486)
T PRK04863 146 RVLTLNELKDKAAA 159 (1486)
T ss_pred ccCCHHHHHHHHHH
Confidence 35777887776544
No 91
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.21 E-value=97 Score=37.46 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHh
Q 005852 581 EARQELERLRAEREVDKIALMKERAAIESEM-EILSKLRREVEEQLESL 628 (674)
Q Consensus 581 ~~~~ele~~r~~re~e~~~llKeraa~e~e~-~~L~~Lr~evde~~q~l 628 (674)
+.+.++++++.+.++.+..|-+++..++.++ .++..++.|..++++..
T Consensus 534 ~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a 582 (782)
T PRK00409 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEA 582 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443333 34455666666655554
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=61.04 E-value=5.1e+02 Score=34.14 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 005852 353 REYARWLV 360 (674)
Q Consensus 353 aEFArwLV 360 (674)
.+|-..|+
T Consensus 172 ~~Y~~~Ll 179 (1486)
T PRK04863 172 TDYHSLMF 179 (1486)
T ss_pred HHHHHHHH
Confidence 44554443
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.82 E-value=1.1e+02 Score=33.08 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 005852 589 LRAEREVDKIALMKERAAIESE 610 (674)
Q Consensus 589 ~r~~re~e~~~llKeraa~e~e 610 (674)
++.+-++++..+-++.+.++.+
T Consensus 72 e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 72 EREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.98 E-value=2.4e+02 Score=30.00 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHH
Q 005852 602 KERAAIESEMEIL 614 (674)
Q Consensus 602 Keraa~e~e~~~L 614 (674)
++..|+..|++.+
T Consensus 89 ~e~~aL~~E~~~a 101 (239)
T COG1579 89 RELRALNIEIQIA 101 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.70 E-value=2.9e+02 Score=30.56 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HHHHHHHHHHHH
Q 005852 578 MAEEARQELERLRAEREVDKIALMKERAAIESEME-----ILSKLRREVEEQ 624 (674)
Q Consensus 578 ~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~-----~L~~Lr~evde~ 624 (674)
++.....|=|.+.-.=.+.+..|-.|++.+++..+ ++.+|+..++.+
T Consensus 96 L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L 147 (310)
T PF09755_consen 96 LALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444444445555666667776666544 256666665543
No 96
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.64 E-value=5.2e+02 Score=33.47 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLRA 591 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r~ 591 (674)
++++...|.+++++|++.+.++.+.++..+
T Consensus 418 eke~ek~~~~~~e~e~~pe~~~~~i~~~~~ 447 (1293)
T KOG0996|consen 418 EKEIEKARRKKSELEKAPEKARIEIQKCQT 447 (1293)
T ss_pred HHHHHHHHhhHHHHHhCchhhHhHHHHHHH
Confidence 344555555555555555555544444333
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.60 E-value=4.6e+02 Score=32.87 Aligned_cols=117 Identities=20% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCcHHHHH---HHHHcccchhHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHhHHH
Q 005852 505 DKPVTNAQAA---VALAIGEASDAVNEELQRIEAES-AAENAVSEHSALVAEVEK------EINESFEKELSMEREKIDV 574 (674)
Q Consensus 505 kkPVTRAEAA---aaL~sG~~~e~v~eEl~RlEAE~-~a~~av~~~~~l~~~~ek------di~~~~~~~l~~Er~~~~~ 574 (674)
+..+||+-|+ ++|-.-+..+.+.+-+..||.++ ||..-|-.--+...-++. ..++--+++|..-+.+++.
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~ 404 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFR 404 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455666666 23345566667777777776443 333333332333333343 3344445566666677777
Q ss_pred HHHH----------HHHHHHHHHHHHHHH-----HHHHHHHhhh------hhHHHHHHHHHHHHHHHH
Q 005852 575 VEKM----------AEEARQELERLRAER-----EVDKIALMKE------RAAIESEMEILSKLRREV 621 (674)
Q Consensus 575 vek~----------~~~~~~ele~~r~~r-----e~e~~~llKe------raa~e~e~~~L~~Lr~ev 621 (674)
.|.. +++|..-|..+.+.+ .-++...||+ |-||+.++++..+||.-.
T Consensus 405 ~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~ 472 (1265)
T KOG0976|consen 405 LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALM 472 (1265)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHh
Confidence 7766 666666666665543 3345555655 568899999998888643
No 98
>PRK03918 chromosome segregation protein; Provisional
Probab=58.26 E-value=3.1e+02 Score=32.67 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=14.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005852 565 LSMEREKIDVVEKMAEEARQELERLRAER 593 (674)
Q Consensus 565 l~~Er~~~~~vek~~~~~~~ele~~r~~r 593 (674)
+..-+.....+++-+.....++++++...
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555554433
No 99
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.05 E-value=32 Score=39.29 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 005852 650 ENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 650 e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
+.-.-+..++-..||-|.+||+
T Consensus 182 eQLRre~V~lentlEQEqEalv 203 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALV 203 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3334456677777888888875
No 100
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.77 E-value=3.2e+02 Score=30.71 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 005852 603 ERAAIESEMEILSKLRREVEEQLE 626 (674)
Q Consensus 603 eraa~e~e~~~L~~Lr~evde~~q 626 (674)
.++.++.|...|.....++.+..+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 101
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.49 E-value=62 Score=37.72 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 605 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 605 aa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
+++..=++.|-.|+.|...+.+.+.+-+-++..+++.+++...+++.
T Consensus 212 ~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 212 LELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34444455566666666666666666666666666666555555543
No 102
>PRK02224 chromosome segregation protein; Provisional
Probab=57.12 E-value=4.1e+02 Score=31.84 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 640 ERINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
..|+.|+.+++.-++.+..++..+..=+++|.
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 443 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVE 443 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444344443
No 103
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.90 E-value=5.3e+02 Score=32.99 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=17.2
Q ss_pred cccccCCCceeeccccCh-hHHHHHHHccccc
Q 005852 308 AALQVLPGKVLVPAVVDQ-VQGQALSALQVLK 338 (674)
Q Consensus 308 ~af~v~s~rv~Vp~a~D~-~qIeaLAaLGILk 338 (674)
.|++...|-.+..+++|- .-...|...|-+.
T Consensus 538 tAle~~aGgrLynvVv~te~tgkqLLq~g~l~ 569 (1174)
T KOG0933|consen 538 TALETTAGGRLYNVVVDTEDTGKQLLQRGNLR 569 (1174)
T ss_pred HHHHHHhcCcceeEEeechHHHHHHhhccccc
Confidence 466555555555555554 4445666666543
No 104
>PRK03918 chromosome segregation protein; Provisional
Probab=56.86 E-value=4.1e+02 Score=31.71 Aligned_cols=12 Identities=0% Similarity=0.047 Sum_probs=5.7
Q ss_pred CCCcHHHHHHHH
Q 005852 506 KPVTNAQAAVAL 517 (674)
Q Consensus 506 kPVTRAEAAaaL 517 (674)
+|-.|.+.-.=|
T Consensus 143 ~~~~r~~~~~~~ 154 (880)
T PRK03918 143 SDESREKVVRQI 154 (880)
T ss_pred CcHHHHHHHHHH
Confidence 455555544333
No 105
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.60 E-value=5.4e+02 Score=32.75 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHhh----HHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHH
Q 005852 524 DAVNEELQRIEAE-SAAENAVSEH----SALVAEV---EKEINESFEKELSMEREKIDVVEKM---AEEARQELERLRAE 592 (674)
Q Consensus 524 e~v~eEl~RlEAE-~~a~~av~~~----~~l~~~~---ekdi~~~~~~~l~~Er~~~~~vek~---~~~~~~ele~~r~~ 592 (674)
.....||--++++ ..-+.+...- ..|+.+. ++|+.+|-+++....+.+-.+.-+. |++...++..++.+
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~ 256 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQA 256 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHH
Confidence 3455666666643 3333333222 3333333 5599999998887776655433332 45556666666666
Q ss_pred HH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 593 RE---VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 665 (674)
Q Consensus 593 re---~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~ 665 (674)
++ ++.-.+.|+.+-++|-++.|-+.++|.+.....+.++ +-.=..++++....+...++.+.+++..||.
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~---~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE---LNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4556788999999999999999888887776555432 1111234444444444444444444444444
No 106
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=55.31 E-value=5.2e+02 Score=32.46 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 561 FEKELSMEREKIDVVEKMAEEARQELERLRA-----------EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 629 (674)
Q Consensus 561 ~~~~l~~Er~~~~~vek~~~~~~~ele~~r~-----------~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~ 629 (674)
|..-|-.|....++.=|+.++-+.+|.+-|+ --+.++-.+-+++|+|.|.--.-.+=-+=.|+.++.|-
T Consensus 278 kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 278 KNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 5555656665555555555554444443332 22345556666777776653221111111334444444
Q ss_pred hcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 630 SNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 630 s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
-.+.+....-.+|+.+....+.+.|.+..++.+++
T Consensus 358 Kkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq 392 (1265)
T KOG0976|consen 358 KKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ 392 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555554444
No 107
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=55.07 E-value=2.1e+02 Score=27.95 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH
Q 005852 593 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 649 (674)
Q Consensus 593 re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~ 649 (674)
|..-.+.+...|..+....++|..+..+|-+.|..+..+ .| +.-|.+|..+.
T Consensus 61 r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y---~~~l~~li~~~ 112 (188)
T PRK02292 61 QELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KR---EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hH---HHHHHHHHHhc
Confidence 444456666777789999999999999999999998875 22 45666666655
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.05 E-value=5.6e+02 Score=32.79 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005852 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVE 622 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evd 622 (674)
.+.+..++++++...+.....+=.+...+.+.-.-|..|..+|+
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 918 LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333333444444444444544444
No 109
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.00 E-value=1.2e+02 Score=25.96 Aligned_cols=55 Identities=33% Similarity=0.445 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005852 533 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 591 (674)
Q Consensus 533 lEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~ 591 (674)
|+||--|.+++..+---+ |.-+-.|+++|..-..+..+++.-....+.+++++|.
T Consensus 6 L~~EirakQ~~~eEL~kv----k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKV----KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666666665532212 4556677888888777777777777777777777765
No 110
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=54.78 E-value=2e+02 Score=30.48 Aligned_cols=12 Identities=17% Similarity=-0.036 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 005852 352 RREYARWLVSAS 363 (674)
Q Consensus 352 RaEFArwLVRAl 363 (674)
..|-.+++-+|.
T Consensus 38 e~e~~~A~~~A~ 49 (297)
T PF02841_consen 38 EAENRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 111
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=54.76 E-value=1.8e+02 Score=27.05 Aligned_cols=75 Identities=32% Similarity=0.406 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHH
Q 005852 577 KMAEEARQELERLRAEREV-------DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 649 (674)
Q Consensus 577 k~~~~~~~ele~~r~~re~-------e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~ 649 (674)
+.+..+..|||++|.--.- =..-|=+|||+++-|- -|++|++-+|.. |+.+-|+.|..-+
T Consensus 13 ~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA-----------~Qy~Rm~EEk~~--yD~e~ie~L~~~l 79 (94)
T PF04576_consen 13 KALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEA-----------RQYQRMAEEKAE--YDQEAIESLKDIL 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 4455566677766643211 1122334555543321 478888888765 5677788888888
Q ss_pred HHHHHHHHHHHHHHH
Q 005852 650 ENENQEIARLQYELE 664 (674)
Q Consensus 650 e~~~~~~~~~k~~LE 664 (674)
-.+..++..|..+|+
T Consensus 80 ~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 80 YKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHhhcC
Confidence 777777777776653
No 112
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=54.03 E-value=3.5e+02 Score=30.02 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 005852 566 SMEREKIDVVEKMAEEARQELE 587 (674)
Q Consensus 566 ~~Er~~~~~vek~~~~~~~ele 587 (674)
.-||....++|+|+++-+.-++
T Consensus 327 qlerqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 327 QLERQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777788888877655443
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.97 E-value=3.1e+02 Score=32.16 Aligned_cols=14 Identities=0% Similarity=0.356 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 005852 550 VAEVEKEINESFEK 563 (674)
Q Consensus 550 ~~~~ekdi~~~~~~ 563 (674)
+.++.+|++.+|..
T Consensus 184 ~~~L~~dl~~~~~~ 197 (650)
T TIGR03185 184 IDRLAGDLTNVLRR 197 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566777777764
No 114
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=4.9e+02 Score=31.75 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
+++.-.-|=...++++..+..||.+|..+-....+|..=+...+++.+.|. ..+-..+.++.+|..++-.
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~---~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK---ASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344445555667889999999999998877766666666666666555543 3445555555555444433
No 115
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=53.73 E-value=2e+02 Score=31.99 Aligned_cols=97 Identities=28% Similarity=0.362 Sum_probs=48.5
Q ss_pred HHHHHHH---HHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHH
Q 005852 553 VEKEINE---SFEKELSMERE------KIDVVEKMAEEARQELERLRAEREVDKIA--LMKERAAIESEMEILSKLRREV 621 (674)
Q Consensus 553 ~ekdi~~---~~~~~l~~Er~------~~~~vek~~~~~~~ele~~r~~re~e~~~--llKeraa~e~e~~~L~~Lr~ev 621 (674)
|||++|. -|++.+++-|. +-++++|+-+.+.+ ++++.|+.+.. +-|-+-.|+.+-+- -...-|
T Consensus 41 VEkean~lidk~deqiKaKkkLmV~aKkheaL~kl~eSaeq----e~aekEkrKfa~klkKskdklekeddd--Y~qknm 114 (421)
T KOG4429|consen 41 VEKEANKLIDKKDEQIKAKKKLMVLAKKHEALEKLEESAEQ----EKAEKEKRKFALKLKKSKDKLEKEDDD--YVQKNM 114 (421)
T ss_pred HHHHHHHHhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH----hhcchHHHHHHHHhhhhHHHHhhhhhh--HHHHhh
Confidence 3455443 58888888874 45567777666644 45555544333 23333333333221 122334
Q ss_pred HHHHHHhhhcce-------ehhHHHHHHHHHHHHHHHHHHH
Q 005852 622 EEQLESLMSNKV-------EISYEKERINMLRKEAENENQE 655 (674)
Q Consensus 622 de~~q~l~s~~~-------~~~~Ek~~l~kL~~~~e~~~~~ 655 (674)
+.-.|||+++.+ .-.-|++||+-+..-+-.=.|-
T Consensus 115 ag~kqRlk~ENtLekc~eSi~elEkeRia~~cnaL~qYkqh 155 (421)
T KOG4429|consen 115 AGEKQRLKTENTLEKCVESIEELEKERIAHCCNALGQYKQH 155 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555432 1234666666665554443333
No 116
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.15 E-value=99 Score=35.05 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 005852 605 AAIESEMEILSKL 617 (674)
Q Consensus 605 aa~e~e~~~L~~L 617 (674)
++++.+..+|..+
T Consensus 95 ~~~~~~~~~l~~~ 107 (525)
T TIGR02231 95 DALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444333
No 117
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.67 E-value=2.4e+02 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 005852 567 MEREKIDVVEKMAEEARQELERLRA 591 (674)
Q Consensus 567 ~Er~~~~~vek~~~~~~~ele~~r~ 591 (674)
.+|.....+....+..++|+++++.
T Consensus 70 ~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 70 SRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554
No 118
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.35 E-value=4.2e+02 Score=30.58 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005852 560 SFEKELSMEREKIDVVEKMAEEARQELERL 589 (674)
Q Consensus 560 ~~~~~l~~Er~~~~~vek~~~~~~~ele~~ 589 (674)
-=+++|..|+.+..-.||+.+.+..=+.-+
T Consensus 209 ~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 209 GEDEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred CcHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345678888888888888877766665555
No 119
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.03 E-value=3e+02 Score=28.79 Aligned_cols=54 Identities=39% Similarity=0.412 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 577 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 577 k~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s 630 (674)
+.+++.+..|++.+.+-+.++..|-.+...-..+++.|..=..++.....+|..
T Consensus 43 k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 43 KQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777776666676666666666666666655555555544444443
No 120
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=51.21 E-value=2.9e+02 Score=31.59 Aligned_cols=39 Identities=31% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005852 576 EKMAEEARQELERLRAEREVDKIALMKERAAIESEMEIL 614 (674)
Q Consensus 576 ek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L 614 (674)
||.-.||.....+++++....-.-.|-|+||+..|+..|
T Consensus 323 ek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L 361 (442)
T PF06637_consen 323 EKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSL 361 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555555555555443
No 121
>PRK09039 hypothetical protein; Validated
Probab=49.85 E-value=3.9e+02 Score=29.35 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 005852 652 ENQEIARLQYELE 664 (674)
Q Consensus 652 ~~~~~~~~k~~LE 664 (674)
+.+++.+.++++.
T Consensus 188 ~~~~l~~~~~~~~ 200 (343)
T PRK09039 188 RVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHhHHHHH
Confidence 3555666666654
No 122
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.71 E-value=3.2e+02 Score=31.59 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 522 ASDAVNEELQRIEAESAAENAVSEHSAL-VAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL 600 (674)
Q Consensus 522 ~~e~v~eEl~RlEAE~~a~~av~~~~~l-~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~l 600 (674)
..+.+++++.-++||.-|-.|-..+-++ +.++++|.. .|.+||-+.++-+++.-.=..-++++|+.-..+.-++
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~-----~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT-----QLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777766655554444222 223333332 3556777777777777777777777777777777777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 005852 601 MKERAAIESEMEILSKLRREVEE 623 (674)
Q Consensus 601 lKeraa~e~e~~~L~~Lr~evde 623 (674)
-+.+|..+.-+-.|...|.+.-+
T Consensus 103 ~~q~~e~~n~~~~l~~~~~~~r~ 125 (459)
T KOG0288|consen 103 REQKAEFENAELALREMRRKMRI 125 (459)
T ss_pred HHhhhhhccchhhHHHHHHHHHH
Confidence 77777777666666666655543
No 123
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=49.30 E-value=2.2e+02 Score=30.64 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------HH-H
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ------LE-S 627 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~------~q-~ 627 (674)
+||+.||.++=..|++=...++||+..-..--..-+..+.-....+ +++.+-|=.++|...+.+-.+- +. .
T Consensus 22 qDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~--~~S~~~~W~~lL~qT~~~sk~h~~LSd~y~~~ 99 (253)
T cd07683 22 QDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQN--LLSPVNCWYLLLNQVRRESKDHATLSDIYLNN 99 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999888888888888888776653211110100111112 5788888888888877765441 11 1
Q ss_pred hhhcceehhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005852 628 LMSNKVEISYEKERINMLRKEAENE-NQEIARLQYELEV 665 (674)
Q Consensus 628 l~s~~~~~~~Ek~~l~kL~~~~e~~-~~~~~~~k~~LE~ 665 (674)
|+..=..+..+-.||.|-.+++..+ |+++.++..||.-
T Consensus 100 ~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t 138 (253)
T cd07683 100 VIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYT 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223777888888888888765 5678888877753
No 124
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.62 E-value=5e+02 Score=30.28 Aligned_cols=19 Identities=0% Similarity=-0.169 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHcccchh
Q 005852 506 KPVTNAQAAVALAIGEASD 524 (674)
Q Consensus 506 kPVTRAEAAaaL~sG~~~e 524 (674)
..-+|+|-+++..+..|=|
T Consensus 245 ~SrlkqEnlqLvhR~h~LE 263 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLE 263 (502)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3457888888888877643
No 125
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=48.31 E-value=3.4e+02 Score=28.29 Aligned_cols=122 Identities=29% Similarity=0.371 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 524 DAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKE 603 (674)
Q Consensus 524 e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKe 603 (674)
|-+-.=|-|.|+|+|+ +...|+-|+ +|+|+.-...+.+=|...+.-+|+-++ -+||-.+=--- -....|.
T Consensus 19 eel~~rLR~~E~ek~~--~m~~~g~lm----~evNrrlQ~hl~EIR~LKe~NqkLqed-NqELRdLCCFL---DddRqKg 88 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMS--LMVEHGRLM----KEVNRRLQQHLNEIRGLKEVNQKLQED-NQELRDLCCFL---DDDRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccc---chhHHHh
Confidence 4444556778888884 446677777 777777766666656666555555432 12221110000 0133455
Q ss_pred hhHHHHHHHHHHH-----HHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 604 RAAIESEMEILSK-----LRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 604 raa~e~e~~~L~~-----Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
|- +..|-|.|.+ +|.||-.-.++|. -|+.-+.++-.++.++-++=.+|.-|+
T Consensus 89 rk-larEWQrFGryta~vmr~eV~~Y~~KL~-----------eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 89 RK-LAREWQRFGRYTASVMRQEVAQYQQKLK-----------ELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HH-HhHHHHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 55 6777787765 5666655544443 123336677777888888888888776
No 126
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.29 E-value=3e+02 Score=33.91 Aligned_cols=10 Identities=40% Similarity=0.298 Sum_probs=4.5
Q ss_pred HHHHhhhhhH
Q 005852 597 KIALMKERAA 606 (674)
Q Consensus 597 ~~~llKeraa 606 (674)
+..-+|||-|
T Consensus 204 lqlhlkerma 213 (916)
T KOG0249|consen 204 LQLHLKERMA 213 (916)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 127
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=47.55 E-value=2.7e+02 Score=29.48 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=6.2
Q ss_pred CccHHHHHHHHHHH
Q 005852 349 LCIRREYARWLVSA 362 (674)
Q Consensus 349 pITRaEFArwLVRA 362 (674)
.||=..|+.++-..
T Consensus 4 ~vtG~~L~~L~~~Y 17 (297)
T PF02841_consen 4 TVTGPMLAELVKSY 17 (297)
T ss_dssp B-BHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 44555555544433
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.25 E-value=2.1e+02 Score=34.34 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 639 KERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 639 k~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
..+|.+|..+++++...+.+|+-.|+-=+
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766665433
No 129
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.07 E-value=5.8e+02 Score=30.56 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--HHhhhcceehh-HHHHHHHHHHHHHHH
Q 005852 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL--ESLMSNKVEIS-YEKERINMLRKEAEN 651 (674)
Q Consensus 575 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~--q~l~s~~~~~~-~Ek~~l~kL~~~~e~ 651 (674)
=...|+..+..++--+..+++.+..+=+|-+..|.|.|.|..-..++--|+ |++...-|+-| .|++.|++=..+++.
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~ 353 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQS 353 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777888888888888888888888887754333333332 34444444322 344444433333333
Q ss_pred HH
Q 005852 652 EN 653 (674)
Q Consensus 652 ~~ 653 (674)
+.
T Consensus 354 ~~ 355 (581)
T KOG0995|consen 354 EL 355 (581)
T ss_pred HH
Confidence 33
No 130
>PF13514 AAA_27: AAA domain
Probab=46.83 E-value=6.9e+02 Score=31.39 Aligned_cols=77 Identities=26% Similarity=0.275 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHHHhhhc--------ceehhHHHHHHHHHHHHHHHHHHHHHH
Q 005852 594 EVDKIALMKERAAIESEMEILSKLRREVE-------EQLESLMSN--------KVEISYEKERINMLRKEAENENQEIAR 658 (674)
Q Consensus 594 e~e~~~llKeraa~e~e~~~L~~Lr~evd-------e~~q~l~s~--------~~~~~~Ek~~l~kL~~~~e~~~~~~~~ 658 (674)
..++..|...+..+..-++-|-+++.++. ..++.|--. -.--.+-+.+|++|..+.+.-.+.+..
T Consensus 285 ~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~ 364 (1111)
T PF13514_consen 285 AAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQ 364 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555555555554 444444311 001235567777777776666666666
Q ss_pred HHHHHHHHHHHh
Q 005852 659 LQYELEVERKAL 670 (674)
Q Consensus 659 ~k~~LE~Ek~AL 670 (674)
++..|+.-+..|
T Consensus 365 ~~~~l~~~~~~~ 376 (1111)
T PF13514_consen 365 ARRELEEAEREL 376 (1111)
T ss_pred HHHHHHHHHHHH
Confidence 666665544444
No 131
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.54 E-value=3.4e+02 Score=30.21 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMK 602 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llK 602 (674)
+-|+--|..=+.....+++.+.+++..|+++..+-.+.+..+-+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~s 259 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIES 259 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666678888999999999999999998887776655433
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=46.41 E-value=4.7e+02 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=24.0
Q ss_pred HHHHHHHccccccCC--CCcCCCCCccHHHHHHHHHH
Q 005852 327 QGQALSALQVLKVIE--ADVKPGDLCIRREYARWLVS 361 (674)
Q Consensus 327 qIeaLAaLGILkg~E--gtF~Pn~pITRaEFArwLVR 361 (674)
..+++..+|+-..++ ....|+..=+|.=|.-++=+
T Consensus 71 lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiek 107 (594)
T PF05667_consen 71 LAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEK 107 (594)
T ss_pred HHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHH
Confidence 556777889866444 45599999888876554433
No 133
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.26 E-value=4.1e+02 Score=33.92 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 672 (674)
Q Consensus 614 L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~m 672 (674)
+.+++.....+...+.+-.-.+.-.+..+.+|+.+.....++.-++.-+|...+.-|..
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 34555555666666666666777777788888888888888888888777776655543
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=45.97 E-value=3.3e+02 Score=32.82 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 005852 508 VTNAQAAVALAIGEASDAVNEELQRIEAES 537 (674)
Q Consensus 508 VTRAEAAaaL~sG~~~e~v~eEl~RlEAE~ 537 (674)
--|..+..--.+-+..+.+.||-.|-|||.
T Consensus 596 qdRks~srekr~~~sfdk~kE~Rr~Re~ee 625 (940)
T KOG4661|consen 596 QDRKSRSREKRRERSFDKRKEERRRREAEE 625 (940)
T ss_pred hhhHHHHHHhhhhhhHHhhhhHHHhHHHHH
Confidence 356666555556677788888877777763
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.75 E-value=2.7e+02 Score=26.29 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHH
Q 005852 574 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN 653 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~ 653 (674)
..-+.+.+|....+++=..+-.....|-+=|+.+..-+..+..|+.+++..-..|...+.....++..|++=..+++.+.
T Consensus 35 ~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 35 SQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555556666666677777778888888888888888888888888888888888887777
Q ss_pred HHHHH
Q 005852 654 QEIAR 658 (674)
Q Consensus 654 ~~~~~ 658 (674)
+.+..
T Consensus 115 ~dL~~ 119 (132)
T PF07926_consen 115 EDLNE 119 (132)
T ss_pred HHHHH
Confidence 77654
No 136
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=45.52 E-value=7.7e+02 Score=31.60 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 005852 573 DVVEKMAEEARQELERLR---AEREVDKIALMKE 603 (674)
Q Consensus 573 ~~vek~~~~~~~ele~~r---~~re~e~~~llKe 603 (674)
..+++-.++.....+.+| ++-|+....++-|
T Consensus 298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e 331 (1074)
T KOG0250|consen 298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDE 331 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 333333333334444444 3444444444433
No 137
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.27 E-value=3.6e+02 Score=27.76 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh-------hhcceehhHH--HHHHHHHHHHHHH
Q 005852 594 EVDKIALMKERAAIESEMEILSKLRREVEEQLESL-------MSNKVEISYE--KERINMLRKEAEN 651 (674)
Q Consensus 594 e~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l-------~s~~~~~~~E--k~~l~kL~~~~e~ 651 (674)
++.....-++.+.++.+++-+...+.++.-++.+. ...-+=+..+ ..||++|...+..
T Consensus 76 ~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 76 ERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 34445555666666666666666666666533332 2233333333 5678888777754
No 138
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=44.58 E-value=3e+02 Score=26.50 Aligned_cols=71 Identities=30% Similarity=0.446 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHH
Q 005852 574 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 648 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~ 648 (674)
.++...+.+..+++..+. |..-.+.+-..|.-+....+++..+..+|.+.|..+....-.| +.-|.+|..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~~~~~~~Y---~~~L~~li~~ 105 (198)
T PF01991_consen 35 EIEEIIEKAEKEAEQEKE-REISKAELEARRELLEAKQEIIDEVFEEVKEKLKSFSKDPDDY---KKFLKKLIEE 105 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-TH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHH
Confidence 334555556666655554 3344455555667788888899999999988888887766333 2445555544
No 139
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.51 E-value=6.3e+02 Score=30.27 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005852 556 EINESFEKELSMEREKIDVVEKMAEEARQELE 587 (674)
Q Consensus 556 di~~~~~~~l~~Er~~~~~vek~~~~~~~ele 587 (674)
+-++.|+++|.+=.+-++++|--.+..+.+-.
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777766655555555554444444333
No 140
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=44.47 E-value=3.5e+02 Score=27.29 Aligned_cols=76 Identities=30% Similarity=0.432 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHH
Q 005852 574 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN 653 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~ 653 (674)
++|+-+.+-+.+|.++.. .|.+.-..++.+.+.|.+...+++..-+.|...+-.+-.-+..++.+..+...+.
T Consensus 68 ~~E~E~~~~~~el~~~E~-------rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~L 140 (201)
T PF12072_consen 68 ELERELKERRKELQRLEK-------RLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQEL 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554322 2333334555555555555555555555555544444444444554444444444
Q ss_pred HHH
Q 005852 654 QEI 656 (674)
Q Consensus 654 ~~~ 656 (674)
+.|
T Consensus 141 e~i 143 (201)
T PF12072_consen 141 EEI 143 (201)
T ss_pred HHH
Confidence 443
No 141
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=44.22 E-value=1.6e+02 Score=29.30 Aligned_cols=50 Identities=12% Similarity=0.316 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005852 574 VVEKMAEEARQELERLRAE-REVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~-re~e~~~llKeraa~e~e~~~L~~Lr~evde~~ 625 (674)
+.|+.+.+|+.|..+++.+ |++-.++...+|+++|.+- -.-|.+|+.+|.
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L--~~~~~~~~~~~~ 116 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDL--KNSINQNIEDIN 116 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3455666777777777777 7777788888888877653 334556666654
No 142
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.46 E-value=2.5e+02 Score=33.74 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCcHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005852 507 PVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQEL 586 (674)
Q Consensus 507 PVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~el 586 (674)
.+-...+++.+.+|.. |.+=|...+++...+.-+-+ .+.-..||..+ .+.|..=+.+.+..+..-.+...+|
T Consensus 374 ~~d~~rika~VIrG~~---l~eal~~~~e~~~p~e~~~~----~~~e~~ei~~~-~~~i~~~~~~ve~l~~e~~~L~~~~ 445 (652)
T COG2433 374 WKDVERIKALVIRGYP---LAEALSKVKEEERPREKEGT----EEEERREITVY-EKRIKKLEETVERLEEENSELKREL 445 (652)
T ss_pred hhhHHHHHHHeecCCc---HHHHHHHHHhhhcccccccc----ccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888876 23333333333332221111 11111133322 2222222223333333333333333
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 587 ERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 587 e~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
++++ +++..|-.+.+.+..+...=.+.+.|+..+-.+....+.+++.++.+++.|..++..
T Consensus 446 ee~k----~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 446 EELK----REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 444444455555555555555666777777777777788888888888888777654
No 143
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=43.12 E-value=2.7e+02 Score=26.62 Aligned_cols=52 Identities=31% Similarity=0.429 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 578 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 578 ~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
-=+||..|.+.-|..||++.- .|+.+++=++-.+-.++..+++..++.|-+.
T Consensus 36 AKeEA~~Eie~yr~qrE~efk--~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~ 87 (108)
T KOG1772|consen 36 AKEEAEKEIEEYRSQREKEFK--EKESAASGSQGALEKRLEQETDDKIAGLKTS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 346788899999999998875 4778888899999999999999998887554
No 144
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.90 E-value=5.8e+02 Score=29.53 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 597 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~ 597 (674)
++|.+. ..+|..=.....++|---+.|++||+.-|.||+.-.
T Consensus 81 ~qlr~~-rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~ 122 (499)
T COG4372 81 PQLRAL-RTELGTAQGEKRAAETEREAARSELQKARQEREAVR 122 (499)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 234444444445556556677778887777776433
No 145
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=42.32 E-value=2.5e+02 Score=28.94 Aligned_cols=94 Identities=28% Similarity=0.263 Sum_probs=52.6
Q ss_pred HHHHHHHHH---cccchhHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHH
Q 005852 510 NAQAAVALA---IGEASDAVNEELQRIEAESAAENAVSEH---SALVAEVEKEINESFEKELSMER-----EKIDVVEKM 578 (674)
Q Consensus 510 RAEAAaaL~---sG~~~e~v~eEl~RlEAE~~a~~av~~~---~~l~~~~ekdi~~~~~~~l~~Er-----~~~~~vek~ 578 (674)
+|.||-++. .|.+-+-|-+||-|.|+- .|+-..++ +.|+-.+ + ++|+.+. -.+.-+++-
T Consensus 48 LavAAga~arekag~Ti~EIAeelG~TeqT--ir~hlkgetkAG~lv~et-------Y-~~lK~G~~~~~~~~~~~~~~e 117 (182)
T COG1318 48 LAVAAGALAREKAGMTISEIAEELGRTEQT--VRNHLKGETKAGQLVRET-------Y-EKLKEGGLDAVEVEIEKLEKE 117 (182)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHhCCCHHH--HHHHHhcchhhhhHHHHH-------H-HHHHccCcchHHHHHHHHHhh
Confidence 578887777 677888888888888742 33323332 4444222 1 1222221 111111111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005852 579 A---EEARQELERLRAEREVDKIALMKERAAIESEMEI 613 (674)
Q Consensus 579 ~---~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~ 613 (674)
. .-|..+|.+++.+...-+-.++++++.++-=+..
T Consensus 118 ~l~i~wa~~~l~ki~~~~~~~~ke~~e~k~K~~~~k~~ 155 (182)
T COG1318 118 GLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGE 155 (182)
T ss_pred hhhhHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhc
Confidence 1 1266777888887777777777777777655444
No 146
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=42.18 E-value=1.6e+02 Score=32.36 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 551 AEVEKEINESFEKE-LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 629 (674)
Q Consensus 551 ~~~ekdi~~~~~~~-l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~ 629 (674)
-..+++||+-+-.| |+--|.| +|++++|.+.++--.-..|++ +|-|+|-.|-+|-++..++|-|+-.+++-|+
T Consensus 92 ~~lQq~vn~aY~sEv~kL~~~~---~ERn~~Er~~~iTt~~qq~ee---~Le~k~~~is~qL~~~~~~r~EL~~~~~~l~ 165 (385)
T PF15642_consen 92 TELQQKVNGAYGSEVIKLDRGR---SERNHEERRKKITTSHQQHEE---ALEKKKEDISRQLQVIPKHRVELKQKQDDLT 165 (385)
T ss_pred HHHHHHHHhhhhHHHHHHHHhH---HHhhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 45577888888777 6555544 678888888887766665554 4568888899999988888888887777776
Q ss_pred h
Q 005852 630 S 630 (674)
Q Consensus 630 s 630 (674)
.
T Consensus 166 ~ 166 (385)
T PF15642_consen 166 K 166 (385)
T ss_pred H
Confidence 4
No 147
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=41.85 E-value=3e+02 Score=25.81 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=44.2
Q ss_pred HHHhhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhcceehhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 598 IALMKERAAIESEMEILSKL---RREVEEQLESLMSNKVEISYE---KERINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 598 ~~llKeraa~e~e~~~L~~L---r~evde~~q~l~s~~~~~~~E---k~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
..|-+-+..++.+.+-|..| +.+....+.......+.+..= +.-|..|...+....+.|..++..++.-++.+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555 555555444444444433322 234778888888888888888888877666654
No 148
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.66 E-value=1.5e+02 Score=33.62 Aligned_cols=76 Identities=33% Similarity=0.410 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005852 547 SALVAEVEKEIN--ESFEKELSMEREKID----VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRRE 620 (674)
Q Consensus 547 ~~l~~~~ekdi~--~~~~~~l~~Er~~~~----~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~e 620 (674)
.+++.+.|+|-- .--++++..||+||. .|||+++|..-|.+.||++++.+- |.+--+..||+-|..+-..
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree----~r~K~lKeEmeSLkeiVkd 284 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREE----KRQKMLKEEMESLKEIVKD 284 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Confidence 455556666652 345778889999875 577888888888888888765442 2233333455544444333
Q ss_pred HHHHHH
Q 005852 621 VEEQLE 626 (674)
Q Consensus 621 vde~~q 626 (674)
.+--.|
T Consensus 285 lEA~hQ 290 (561)
T KOG1103|consen 285 LEADHQ 290 (561)
T ss_pred hhhhhh
Confidence 333333
No 149
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.38 E-value=68 Score=29.74 Aligned_cols=61 Identities=38% Similarity=0.389 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIA----LMKERAAIESEMEILSKLRREVEE 623 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~----llKeraa~e~e~~~L~~Lr~evde 623 (674)
++|..|+.+...+|+-...+-.|||.|-+.==.+-.. --|+|++++.....|-.--.|.+.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888887654222222 234566666655444443333333
No 150
>PRK10869 recombination and repair protein; Provisional
Probab=40.72 E-value=5.4e+02 Score=29.99 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=12.1
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHhh
Q 005852 524 DAVNEELQRIE-AESAAENAVSEH 546 (674)
Q Consensus 524 e~v~eEl~RlE-AE~~a~~av~~~ 546 (674)
+-+.+|+.||. +|+..+..-.+.
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~ 231 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665 555555444443
No 151
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.50 E-value=5.2e+02 Score=28.22 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=67.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHH
Q 005852 564 ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI-ESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (674)
Q Consensus 564 ~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~-e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l 642 (674)
.|..+.......+.++..++.+|.+....=..+...|.+....| .|--..|..||.++.++.+.+...+-++..=++.+
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777766666666666665555555 56777888888888888888777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005852 643 NMLRKEAENENQEIARLQYEL 663 (674)
Q Consensus 643 ~kL~~~~e~~~~~~~~~k~~L 663 (674)
+++...++...+...+++.++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444443
No 152
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.33 E-value=3.8e+02 Score=28.17 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=11.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005852 598 IALMKERAAIESEMEILSKLRREVEE 623 (674)
Q Consensus 598 ~~llKeraa~e~e~~~L~~Lr~evde 623 (674)
..++++=..++.|-..|..++.|.+.
T Consensus 18 ~~i~~e~~~~e~ee~~L~e~~kE~~~ 43 (230)
T PF10146_consen 18 NEILQEVESLENEEKCLEEYRKEMEE 43 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 153
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.99 E-value=5.7e+02 Score=28.53 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 614 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 614 L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
|..|+.++.++..+...+--.|..=+.+|+.|+..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 55556666666655555555555555555555554433
No 154
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=39.87 E-value=3.1e+02 Score=34.58 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 605 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKera 605 (674)
.|..+||.+.+--.+..++.++|..||...+.+.-..|.|.+.
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~ 1156 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHL 1156 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888777777666665543
No 155
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.64 E-value=9.8e+02 Score=31.11 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=11.2
Q ss_pred CCCCccHHHHHHHH
Q 005852 346 PGDLCIRREYARWL 359 (674)
Q Consensus 346 Pn~pITRaEFArwL 359 (674)
.+.|+||.+|..+|
T Consensus 139 ~~~plt~~~l~~~l 152 (1353)
T TIGR02680 139 AGIPLTRDRLKEAL 152 (1353)
T ss_pred CCccCCHHHHHHHh
Confidence 47899999988754
No 156
>PF13945 NST1: Salt tolerance down-regulator
Probab=38.86 E-value=98 Score=31.80 Aligned_cols=69 Identities=26% Similarity=0.272 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE-VD-KIALMKERAAIESEMEILSKLRREVEEQLESL 628 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re-~e-~~~llKeraa~e~e~~~L~~Lr~evde~~q~l 628 (674)
.-|+.||+.==..||..+..|||-.. |.++|..+. -+ -.+-=+-|.|||.|++.|.....|--+++...
T Consensus 105 e~LkeFW~SL~eeERr~LVkIEKe~V-----LkkmKeqq~h~C~C~vCgr~~~~ie~ele~ly~~~y~~l~~~~~~ 175 (190)
T PF13945_consen 105 EKLKEFWESLSEEERRSLVKIEKEAV-----LKKMKEQQKHSCSCSVCGRKRTAIEEELERLYDAYYEELEQYANH 175 (190)
T ss_pred HHHHHHHHccCHHHHHHHHHhhHHHH-----HHHHHHHhccCcccHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999888899999999998543 333333210 11 12334557899999999998887766666543
No 157
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=38.52 E-value=9e+02 Score=30.44 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.3
Q ss_pred cCCCCCccHHHHHHH
Q 005852 344 VKPGDLCIRREYARW 358 (674)
Q Consensus 344 F~Pn~pITRaEFArw 358 (674)
.+||..|+-.+|---
T Consensus 668 iKPN~kM~~~~FeGs 682 (1259)
T KOG0163|consen 668 IKPNSKMIDRHFEGS 682 (1259)
T ss_pred ecCccccccccccHH
Confidence 379999988888543
No 158
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.27 E-value=6.4e+02 Score=29.29 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCCCCcHHHHHHHHHcccchhHHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHh
Q 005852 504 PDKPVTNAQAAVALAIGEASDAVN----------EELQRIEAESAAENAVSEHSALVAEVEKEIN--ESFEKELSMEREK 571 (674)
Q Consensus 504 PkkPVTRAEAAaaL~sG~~~e~v~----------eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~--~~~~~~l~~Er~~ 571 (674)
+....+..++|.+...+++.++.+ +|-.+.-+..|.++... +++++. +-+.++|..++.-
T Consensus 104 ~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~--------~~~e~~~Y~~~l~~Le~~~~~ 175 (447)
T KOG2751|consen 104 SDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVED--------AEDEVDTYKACLQRLEQQNQD 175 (447)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcCcc
Confidence 556667788888888888877754 45555555555333222 233332 3345555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005852 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREV 621 (674)
Q Consensus 572 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~ev 621 (674)
..+-+++ -.+.+|.++......++..++|+++.+..+-+.+..=+.+.
T Consensus 176 ~~~~~~~--~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 176 VSEEDLL--KELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred cchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4222222 22333333333344445555666665555544444433333
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=38.04 E-value=7.1e+02 Score=29.00 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005852 547 SALVAEVEK--EINESFEKELSMEREKIDVVEKMAEEARQELERLRAE 592 (674)
Q Consensus 547 ~~l~~~~ek--di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~ 592 (674)
..|-..+++ ..+.+-++.+..=......+++.......|+++++..
T Consensus 292 d~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 292 DQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555566 4444555666666677777888888888888887765
No 160
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.36 E-value=1.9e+02 Score=29.82 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 565 LSMEREKIDVVEKMAEEARQELERLRAEREV 595 (674)
Q Consensus 565 l~~Er~~~~~vek~~~~~~~ele~~r~~re~ 595 (674)
|+.+......+ .++..||++++++-.+
T Consensus 85 Ls~~p~~~~rl----p~le~el~~l~~~l~~ 111 (206)
T PRK10884 85 LSTTPSLRTRV----PDLENQVKTLTDKLNN 111 (206)
T ss_pred hcCCccHHHHH----HHHHHHHHHHHHHHHH
Confidence 34445555444 4556677777654444
No 161
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=37.07 E-value=4.5e+02 Score=32.85 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 005852 528 EELQRIEAESAAENAVSEHSALVAEVEK 555 (674)
Q Consensus 528 eEl~RlEAE~~a~~av~~~~~l~~~~ek 555 (674)
-|=.|+++....+++..++-..+.+|-.
T Consensus 726 ~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~ 753 (988)
T KOG2072|consen 726 REKQRIEAAIAERESAVKDKKRLSRMYD 753 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4668888888888887777555555543
No 162
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=36.90 E-value=4.7e+02 Score=29.99 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 624 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 672 (674)
Q Consensus 624 ~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~m 672 (674)
|.+.|..-++--.. +..++||++++...++++.+++..|..+.+...|
T Consensus 390 qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~ 437 (445)
T cd00187 390 QADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDL 437 (445)
T ss_pred HHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 55555555443333 5667899999999999999999999777665544
No 163
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.84 E-value=8.4e+02 Score=29.52 Aligned_cols=42 Identities=31% Similarity=0.348 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHH
Q 005852 570 EKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEM 611 (674)
Q Consensus 570 ~~~~~vek~~~~~~~ele~~r~~re~---e~~~llKeraa~e~e~ 611 (674)
.+|+++|.-+-..|++|++.+.++|. ....+..-.+++|.|+
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR 151 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQR 151 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Confidence 45666666666666777666666553 2333444456666665
No 164
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.78 E-value=1.1e+03 Score=30.99 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005852 641 RINMLRKEAENENQEIARLQY 661 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~ 661 (674)
+-.||+-+.+.|.+.|.+|+-
T Consensus 1697 eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1697 EAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777766663
No 165
>PLN02372 violaxanthin de-epoxidase
Probab=36.29 E-value=3.9e+02 Score=30.91 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 005852 610 EMEILSKLRREV 621 (674)
Q Consensus 610 e~~~L~~Lr~ev 621 (674)
||++|..|+.|+
T Consensus 430 e~~~l~~~~~~~ 441 (455)
T PLN02372 430 EKELLEKLKMEA 441 (455)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 166
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.26 E-value=1.1e+03 Score=30.56 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l 642 (674)
.+|++...-+-.++.-....-.+++..| ++....+++.+.++.. +......|-+ ..+|..=++.+...+.||
T Consensus 234 ~els~~~~ei~~~~~~~d~~e~ei~~~k----~e~~ki~re~~~~Dk~---i~~ke~~l~e-rp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 234 DELSRLNAEIPKLKERMDKKEREIRVRK----KERGKIRRELQKVDKK---ISEKEEKLAE-RPELIKVKENASHLKKRL 305 (1141)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHhhcchhhccchhHH
Confidence 3444444444444433333333333333 4445555555555543 2333333434 456777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 643 NMLRKEAENENQEIARLQYELEVERKA 669 (674)
Q Consensus 643 ~kL~~~~e~~~~~~~~~k~~LE~Ek~A 669 (674)
.+..++++.........+.+++..++-
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~ 332 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKE 332 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888888888888877766543
No 167
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.19 E-value=1e+03 Score=30.40 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005852 535 AESAAENAVSEHSALVAEVEK---------EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 605 (674)
Q Consensus 535 AE~~a~~av~~~~~l~~~~ek---------di~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKera 605 (674)
+|++.|+...+++-+....|+ =+.++=+++|..|-+ =|++++-..+||.++.-.|.
T Consensus 419 kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEek-----VklLeetv~dlEalee~~EQ---------- 483 (1243)
T KOG0971|consen 419 KERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEK-----VKLLEETVGDLEALEEMNEQ---------- 483 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHH-----HHHHHHHHHHHHHHHHHHHH----------
Confidence 788888777776443322222 233444555544421 14555556666655544332
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHhhhcceehhHHHHHHHHHHHHHH
Q 005852 606 AIESEMEILSKLRREVEEQ--------------LESLMSNKVEISYEKERINMLRKEAE 650 (674)
Q Consensus 606 a~e~e~~~L~~Lr~evde~--------------~q~l~s~~~~~~~Ek~~l~kL~~~~e 650 (674)
-+|+.+|+-..||+|+|-. .+.+.-.-..|+-=++++.+|+..++
T Consensus 484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlq 542 (1243)
T KOG0971|consen 484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQ 542 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1345555555555555432 22333334445555555666555544
No 168
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=36.13 E-value=5.9e+02 Score=28.35 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 005852 654 QEIARLQYELEVERKALSMA 673 (674)
Q Consensus 654 ~~~~~~k~~LE~Ek~AL~m~ 673 (674)
|++++.+..| |+||.-|
T Consensus 104 QEVLdMh~Fl---reAL~rL 120 (324)
T PF12126_consen 104 QEVLDMHGFL---REALERL 120 (324)
T ss_pred HHHHHHHHHH---HHHHHHh
Confidence 4455555544 4455433
No 169
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.12 E-value=1.3e+02 Score=35.87 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHH
Q 005852 571 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE 650 (674)
Q Consensus 571 ~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e 650 (674)
.+.++-+....+..||-++...|.+- .+|+++. ..+++.|++.+.
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel---------------------~seI~~~--------------n~kiEelk~~i~ 124 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQEL---------------------NSEIEEI--------------NTKIEELKRLIP 124 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhHHHHH--------------HHHHHHHHHHHH
Confidence 45666666666777766665555432 2233322 235666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005852 651 NENQEIARLQYELEVERKALS 671 (674)
Q Consensus 651 ~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
++++++++||-++|.-.-++.
T Consensus 125 ~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 125 QKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HhHHHHHHHHhHHHHHHHHHH
Confidence 777777777777776555544
No 170
>PTZ00491 major vault protein; Provisional
Probab=35.89 E-value=3.9e+02 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005852 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 611 (674)
Q Consensus 575 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~ 611 (674)
.+.+-.++-.||+++|..|+.++ .+.|+++.+|-++
T Consensus 743 a~a~~i~~~ael~~~~~~~~~e~-~~~~~~~~le~~k 778 (850)
T PTZ00491 743 AKALRIEAEAELEKLRKRQELEL-EYEQAQNELEIAK 778 (850)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHH
Confidence 44555566677888887777764 5677777776655
No 171
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=35.66 E-value=3.7e+02 Score=34.08 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHH
Q 005852 635 ISYEKERINMLRKEA 649 (674)
Q Consensus 635 ~~~Ek~~l~kL~~~~ 649 (674)
|...+.+|+.|..++
T Consensus 690 ~~~r~~~ie~~~~~l 704 (1072)
T KOG0979|consen 690 YQQRKERIENLVVDL 704 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=35.48 E-value=6.4e+02 Score=27.85 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh----hhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 604 RAAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 604 raa~e~e~~~L~~Lr~evde~~q~l----~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
=++|..|++-|+.....++-.-|+| ...-..|.+=...|....+.++.-.+++.++|++||-=..|.
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667776666666555554444 445566777777888888899999999999999999655554
No 173
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.48 E-value=1.9e+02 Score=34.30 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHh-------HHHHHHH-----------HHHHHHHHHHHHHHHHHHH--H-H----------Hhhhh
Q 005852 556 EINESFEKELSMEREK-------IDVVEKM-----------AEEARQELERLRAEREVDK--I-A----------LMKER 604 (674)
Q Consensus 556 di~~~~~~~l~~Er~~-------~~~vek~-----------~~~~~~ele~~r~~re~e~--~-~----------llKer 604 (674)
+|+.||..+|+.||.. +.....+ .-.|+..-+.+|.-|..-. . . -+.--
T Consensus 156 sIKTFwSpELKkeraLRkdEc~ris~~~eQ~~l~segNq~gsm~argl~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ 235 (654)
T KOG4809|consen 156 SIKTFWSPELKKERALRKDECKRISFCSEQNALHSEGNQPGSMNARGLSAELRNQRARNQPLEINSSSAKGLGYTCLGRL 235 (654)
T ss_pred ccccccchhhcCcccCchhHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHHhhcchhhhhhhcccCCCchHHHHH
Confidence 9999999999999932 2222222 2233333333332222211 0 0 11133
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHH
Q 005852 605 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 652 (674)
Q Consensus 605 aa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~ 652 (674)
|..+..++.++=||+-..++=+++-+.+-.+-+=.++|-||+..++.+
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~k 283 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRK 283 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888888888888888888887765
No 174
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.38 E-value=6.1e+02 Score=30.46 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 608 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (674)
Q Consensus 608 e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k 660 (674)
+-++-.|-+.|.|.+++=.+|++-+.-..--..-|.+|+-+-....++++..|
T Consensus 517 eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 517 EELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMK 569 (654)
T ss_pred HHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666666554443333456666666666666665555
No 175
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=35.05 E-value=9e+02 Score=32.79 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHH
Q 005852 570 EKIDVVEKMAEEARQELERLRAEREVDKIA--LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 647 (674)
Q Consensus 570 ~~~~~vek~~~~~~~ele~~r~~re~e~~~--llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~ 647 (674)
+...-.++-+..++.|...+|.+.++-... |=|+|. +-=+..+-.+|.|++..-.+--.---.|...+++++.+..
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekl--e~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~ 731 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKL--ENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQ 731 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555556666666554443 334443 3345667788888885444444444567778888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005852 648 EAENENQEIARLQYELEV 665 (674)
Q Consensus 648 ~~e~~~~~~~~~k~~LE~ 665 (674)
++-.-+.-+.++.+++++
T Consensus 732 eL~~a~~k~~~le~ev~~ 749 (1822)
T KOG4674|consen 732 ELLSANEKLEKLEAELSN 749 (1822)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 887777777777776654
No 176
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.62 E-value=8.1e+02 Score=28.68 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=10.1
Q ss_pred cccchhHHHHHHHHHHH
Q 005852 519 IGEASDAVNEELQRIEA 535 (674)
Q Consensus 519 sG~~~e~v~eEl~RlEA 535 (674)
.|+-+--..-|-+-|++
T Consensus 241 ~gd~~SrlkqEnlqLvh 257 (502)
T KOG0982|consen 241 AGDRSSRLKQENLQLVH 257 (502)
T ss_pred cccchhHHHHHHHHHHH
Confidence 45666556666666655
No 177
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.56 E-value=7.7e+02 Score=28.44 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 625 LESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 625 ~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
+..|+-.+..|..|+..+..++.+.-.
T Consensus 170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~ 196 (420)
T COG4942 170 LKQLAAVRAEIAAEQAELTTLLSEQRA 196 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777766655444333
No 178
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.55 E-value=5e+02 Score=26.23 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 005852 547 SALVAEVEKEINESFE 562 (674)
Q Consensus 547 ~~l~~~~ekdi~~~~~ 562 (674)
+.|++++...++..++
T Consensus 83 GlLL~rvrde~~~~l~ 98 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLD 98 (189)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777666655555
No 179
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=33.94 E-value=5e+02 Score=26.94 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=9.1
Q ss_pred CCCcCcHHHHHHHH
Q 005852 431 PESPLSRQDLVSWK 444 (674)
Q Consensus 431 PDspITRQELAvwk 444 (674)
+-.-+||.|+..++
T Consensus 6 ~~~~LSk~dLL~LL 19 (192)
T PF09727_consen 6 KRMDLSKDDLLKLL 19 (192)
T ss_pred ccccCCHHHHHHHH
Confidence 34567888877653
No 180
>PRK12705 hypothetical protein; Provisional
Probab=33.87 E-value=8.4e+02 Score=28.65 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 005852 575 VEKMAEEARQELERL 589 (674)
Q Consensus 575 vek~~~~~~~ele~~ 589 (674)
.|+-+.+.+.++.+.
T Consensus 68 ~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 68 QRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 181
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.79 E-value=4.6e+02 Score=31.67 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 620 EVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 620 evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
+++..-+.|...+.+...-++.+.++..+++...+.+-.++..|+...+-|
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555666677777788888888888877788887776654
No 182
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.71 E-value=2.7e+02 Score=32.68 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=7.1
Q ss_pred cHHHHHHHHHHHhc
Q 005852 351 IRREYARWLVSASS 364 (674)
Q Consensus 351 TRaEFArwLVRAls 364 (674)
=|....+.+-++.+
T Consensus 29 ~K~~ie~~~seatG 42 (555)
T TIGR03545 29 AKKAIERSLEKAFG 42 (555)
T ss_pred HHHHHHHHHHHHHC
Confidence 45555555555543
No 183
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.44 E-value=3.3e+02 Score=30.50 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 628 (674)
Q Consensus 592 ~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l 628 (674)
++.+....+++.+..+..+.+.|.....++.++++++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555666666665
No 184
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.24 E-value=2.7e+02 Score=28.05 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=16.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 599 ALMKERAAIESEMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 599 ~llKeraa~e~e~~~L~~Lr~evde~~q~l~s 630 (674)
..|.-+|.---=-|||.| |.|+|||+++|-+
T Consensus 106 ~~l~~kad~vvsYqll~h-r~e~ee~~~~l~~ 136 (175)
T PRK13182 106 RQLQQKADDVVSYQLLQH-RREMEEMLERLQK 136 (175)
T ss_pred HHHHHHHhhhhhHHHHHh-HHHHHHHHHHHHH
Confidence 333333433333444444 7777777766543
No 185
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=33.11 E-value=8.1e+02 Score=28.22 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=6.4
Q ss_pred HHHHHHHhhh
Q 005852 663 LEVERKALSM 672 (674)
Q Consensus 663 LE~Ek~AL~m 672 (674)
|-.||.||.+
T Consensus 411 l~~ek~al~l 420 (511)
T PF09787_consen 411 LGSEKNALRL 420 (511)
T ss_pred HHhhhhhccc
Confidence 3467777754
No 186
>PRK11519 tyrosine kinase; Provisional
Probab=32.89 E-value=9.3e+02 Score=28.84 Aligned_cols=17 Identities=0% Similarity=-0.001 Sum_probs=10.1
Q ss_pred cccCCCCCcHHHHHHHH
Q 005852 501 LFQPDKPVTNAQAAVAL 517 (674)
Q Consensus 501 ~FqPkkPVTRAEAAaaL 517 (674)
.|+..+|..=+..|-.|
T Consensus 233 s~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 233 TYTGEDREQIRDILNSI 249 (719)
T ss_pred EEEcCCHHHHHHHHHHH
Confidence 37777776555555444
No 187
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=32.73 E-value=9.2e+02 Score=30.57 Aligned_cols=72 Identities=28% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 005852 557 INESFEKELSMEREKIDVVEKMAEE-------AR--QELERLRAEREVDKIALMKERAAIESEMEILSK-LRREVEEQLE 626 (674)
Q Consensus 557 i~~~~~~~l~~Er~~~~~vek~~~~-------~~--~ele~~r~~re~e~~~llKeraa~e~e~~~L~~-Lr~evde~~q 626 (674)
+-+--+.||..||...-+|+.-+.+ || .++|.+-.+..-++.++-|+--||-.|+|.|.. ++.|-+.+++
T Consensus 962 LhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~ 1041 (1424)
T KOG4572|consen 962 LHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELI 1041 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3444567777777666666544433 23 346666666677788888888888888887754 4556666665
Q ss_pred Hh
Q 005852 627 SL 628 (674)
Q Consensus 627 ~l 628 (674)
-+
T Consensus 1042 e~ 1043 (1424)
T KOG4572|consen 1042 ED 1043 (1424)
T ss_pred HH
Confidence 44
No 188
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=32.51 E-value=3.3e+02 Score=31.01 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 622 de~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
++|.+.|..-++-=. =+..++||++++....+++.+++..|..+.
T Consensus 398 ~~q~~~IL~m~L~~L-T~~e~~kL~~e~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 398 EEQADAILDMRLRRL-TKLEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHhHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 456676666655432 366788999999999999999998887654
No 189
>PF14992 TMCO5: TMCO5 family
Probab=32.09 E-value=5.6e+02 Score=28.07 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHhhhcce----ehhHHHHHHHHHHHHHHHHHHHH
Q 005852 585 ELERLRAEREVDKIALMKERAAIESEMEIL----SKLRREVEEQLESLMSNKV----EISYEKERINMLRKEAENENQEI 656 (674)
Q Consensus 585 ele~~r~~re~e~~~llKeraa~e~e~~~L----~~Lr~evde~~q~l~s~~~----~~~~Ek~~l~kL~~~~e~~~~~~ 656 (674)
++...-.+++.+...|-.+.|-+|.+++.| ..|.++++++...+-.++- ..-+=|.++|+++..+......+
T Consensus 53 ~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei 132 (280)
T PF14992_consen 53 EEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEI 132 (280)
T ss_pred HHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHH
Confidence 334444556677767778888899999999 8899999988877544432 11222367777777777666666
Q ss_pred HHHH
Q 005852 657 ARLQ 660 (674)
Q Consensus 657 ~~~k 660 (674)
..+.
T Consensus 133 ~kve 136 (280)
T PF14992_consen 133 AKVE 136 (280)
T ss_pred HHHH
Confidence 6553
No 190
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.00 E-value=5.3e+02 Score=30.18 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 005852 571 KIDVVEKMAE 580 (674)
Q Consensus 571 ~~~~vek~~~ 580 (674)
+-.+|||+-.
T Consensus 276 rnvavek~~l 285 (575)
T KOG4403|consen 276 RNVAVEKLDL 285 (575)
T ss_pred hchhhhhhhH
Confidence 3445555433
No 191
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.99 E-value=1.2e+03 Score=30.00 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhH-------HH---HHHHHHHHHHHHHHHHHHHH
Q 005852 604 RAAIESEMEILSKLRREVEEQLESLMSNKVEISY-------EK---ERINMLRKEAENENQEIARL 659 (674)
Q Consensus 604 raa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~-------Ek---~~l~kL~~~~e~~~~~~~~~ 659 (674)
...+.++.+-+-.+++.+.+.-..|.-.+..+.. -+ ..+.++..+.+..+++++.=
T Consensus 321 ~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G 386 (1174)
T KOG0933|consen 321 KETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAG 386 (1174)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777777777777777777777766665554 22 34455555666666666543
No 192
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=31.81 E-value=5e+02 Score=25.37 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 583 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 629 (674)
Q Consensus 583 ~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~ 629 (674)
..|-..+...=|+-+.+|++=|..+-.-.++|.+.|+........+.
T Consensus 48 kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444555555555555555555554444433333
No 193
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.66 E-value=3.3e+02 Score=28.81 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHH---------------------HHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHH
Q 005852 595 VDKIALMKERAAIESE---------------------MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN 653 (674)
Q Consensus 595 ~e~~~llKeraa~e~e---------------------~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~ 653 (674)
+++..+|||||+||.+ ...+..++.+++.+.+.=..-...+..+-..|.+++++....+
T Consensus 29 kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~r 108 (269)
T cd07673 29 KELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSH 108 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHH
Q 005852 654 QEIAR-LQYELEVERK 668 (674)
Q Consensus 654 ~~~~~-~k~~LE~Ek~ 668 (674)
..+-+ ...-+++.+.
T Consensus 109 K~~ke~~~~~~~~~~~ 124 (269)
T cd07673 109 KKTKEEVAGTLEAVQN 124 (269)
T ss_pred HhHHHHHhhHHHHHHH
No 194
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=31.54 E-value=4.9e+02 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005852 640 ERINMLRKEAENENQEIARLQYE 662 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~ 662 (674)
+-+.+|.+++..+++.|.+..-.
T Consensus 100 ~~~~~L~k~I~~~e~iI~~fe~i 122 (126)
T PF09403_consen 100 DLLNKLDKEIAEQEQIIDNFEKI 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655443
No 195
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=30.93 E-value=4.7e+02 Score=26.96 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=36.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 607 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~ 607 (674)
+|...||.+.+---++.++++++.-+|...+++.-..|++..+++
T Consensus 91 dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~ 135 (185)
T PF08703_consen 91 DKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEV 135 (185)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888889999999999999988888888887766554
No 196
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.68 E-value=6.2e+02 Score=29.16 Aligned_cols=95 Identities=28% Similarity=0.409 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHH
Q 005852 573 DVVEKMAEEARQELERL----------RAEREVDKI--ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 640 (674)
Q Consensus 573 ~~vek~~~~~~~ele~~----------r~~re~e~~--~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~ 640 (674)
.-||.++...|...++. +.+-|..+. --.||||.-|.+-.. .+|+-|-.-|-|...-+|+-.-.|++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqare-aklqaec~rQ~qlaLEEKaaLrkerd 359 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQARE-AKLQAECARQTQLALEEKAALRKERD 359 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777766554432 222222221 224566665555443 38999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 641 RINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
.|. +++|.+..++.+++-.+.+--.||.
T Consensus 360 ~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 360 SLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 755 5778888889999999888887774
No 197
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=30.63 E-value=8.2e+02 Score=27.51 Aligned_cols=42 Identities=33% Similarity=0.365 Sum_probs=34.9
Q ss_pred HHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 623 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 665 (674)
Q Consensus 623 e~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~ 665 (674)
+|++.|++-++ +..=++.++||+++++..++++..++..+..
T Consensus 375 ~q~~yLL~m~L-~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~ 416 (426)
T PF00521_consen 375 EQADYLLSMPL-RRLTKEEIEKLQKEIKELEKEIEELEKILPK 416 (426)
T ss_dssp HHHHHHHTSBG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhchH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998887 4445688899999999999999999887765
No 198
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=30.39 E-value=5.8e+02 Score=30.04 Aligned_cols=58 Identities=21% Similarity=0.394 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh
Q 005852 612 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL---EVERKALSM 672 (674)
Q Consensus 612 ~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~L---E~Ek~AL~m 672 (674)
|+|..+-.++.+-.+.|+-+|-.|+-||.-++|.+..+ |+.+...|-.| ..||+.|+|
T Consensus 358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL---qe~la~tqk~LqEsr~eKetLql 418 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL---QEALANTQKHLQESRNEKETLQL 418 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555667788999999998777655443 44555555444 356666654
No 199
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.02 E-value=9.5e+02 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=18.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 600 LMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 600 llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
+-.+|.+.+.+.++|...+.++-.+.+.|+.+
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666666666653
No 200
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.74 E-value=4.8e+02 Score=24.56 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=38.7
Q ss_pred HhhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhcceehh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 600 LMKERAAIESEMEILSKL---RREVEEQLESLMSNKVEIS---YEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 600 llKeraa~e~e~~~L~~L---r~evde~~q~l~s~~~~~~---~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
|-+-+..++.+..-|..| +.+....+..-....+.+. .=+.=|.+|...+...++.|..++..+|.-++.+.
T Consensus 25 L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ 102 (146)
T PRK07720 25 YEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLT 102 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444 4444444433343433322 22344677777777777788777777776666554
No 201
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.52 E-value=4.4e+02 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.5
Q ss_pred CCCCccchhhhhccccc
Q 005852 84 SINDVAKQDDLQRESAS 100 (674)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (674)
.++.+..|+|||.-+.+
T Consensus 307 ~~~K~~Tqde~q~~as~ 323 (988)
T KOG2072|consen 307 NMNKNLTQDELQRMASR 323 (988)
T ss_pred HhcccccHHHHHHHHHH
Confidence 46677789999988877
No 202
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.32 E-value=5.1e+02 Score=24.77 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHH-HHHHHHHHHHH
Q 005852 590 RAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAE 650 (674)
Q Consensus 590 r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek-~~l~kL~~~~e 650 (674)
|..-..|+..|+++-..+.....-+..|+.++.+.-++.-+-- ++.-|| +.++.|+.|++
T Consensus 46 r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L-ellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 46 RDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL-ELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHH
Confidence 3333444555666666666677777777777776655443321 122222 34455555543
No 203
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=28.81 E-value=5.6e+02 Score=31.90 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 005852 525 AVNEELQRIE 534 (674)
Q Consensus 525 ~v~eEl~RlE 534 (674)
.|.+|++++.
T Consensus 59 ~i~qe~~~n~ 68 (835)
T COG3264 59 LIQQELAIND 68 (835)
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 204
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=28.79 E-value=1.6e+02 Score=30.90 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHH---cccchhHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Q 005852 506 KPVTNAQAAVALA---IGEASDAVNEELQRIEAESAAENAVSEH--SALVAEVEKEINESFEK 563 (674)
Q Consensus 506 kPVTRAEAAaaL~---sG~~~e~v~eEl~RlEAE~~a~~av~~~--~~l~~~~ekdi~~~~~~ 563 (674)
..|..+|+.+--+ +-++++.|..||.|.|.|++.+--.+-+ .+...+.+|++-..|+.
T Consensus 166 ~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~ 228 (234)
T cd07665 166 DEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 6778899999999999999876544333 33333345566666653
No 205
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.76 E-value=9.8e+02 Score=29.41 Aligned_cols=54 Identities=28% Similarity=0.225 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005852 571 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 624 (674)
Q Consensus 571 ~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~ 624 (674)
++.++|.-+-.+|++|.+.++|.+.-....-.-+.+.++--..-.+||.|+.|.
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555554333322222222222222233445555443
No 206
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.14 E-value=1.4e+03 Score=29.48 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcceehhHHHHHHH
Q 005852 611 MEILSKLRREVEEQLESLM---SNKVEISYEKERIN 643 (674)
Q Consensus 611 ~~~L~~Lr~evde~~q~l~---s~~~~~~~Ek~~l~ 643 (674)
.+-|.+|..||+.+.+.|. .+|+.+..=+..|+
T Consensus 784 ~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le 819 (1200)
T KOG0964|consen 784 LERLSKLNKEINKLSVKLRALREERIDIETRKTALE 819 (1200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667766666655433 45555544444443
No 207
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=27.88 E-value=4.6e+02 Score=23.71 Aligned_cols=47 Identities=28% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 551 AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKI 598 (674)
Q Consensus 551 ~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~ 598 (674)
..+.+-+..+|.+.+..|=+.+.. |+.+.+.+.+|+++-.+......
T Consensus 5 ~~~~~Q~~~~l~~~~~~Ef~~I~~-Er~v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 5 ESVHQQMIEFLEENCKKEFEEILE-ERDVVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhHh
Confidence 344556667777766666555543 55666677777777666555443
No 208
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.70 E-value=9.8e+02 Score=27.52 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 005852 524 DAVNEELQRIE 534 (674)
Q Consensus 524 e~v~eEl~RlE 534 (674)
..+..+|+.+.
T Consensus 261 ~~L~~~l~~l~ 271 (582)
T PF09731_consen 261 DALQKELAELK 271 (582)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 209
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.62 E-value=8.3e+02 Score=26.63 Aligned_cols=108 Identities=17% Similarity=0.253 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------HHH-
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ------LES- 627 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~------~q~- 627 (674)
.||+.||.++=..|++=...++||+..-..--...+..+-+.-... +..+-|=.++|...+.+-.+- |..
T Consensus 22 qDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~---~Sp~~~W~~lL~QT~~~Skdh~~LSd~y~~~ 98 (263)
T cd07682 22 QDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNV---LSPVNCWNLLLNQVKRESRDHATLSDIYLNN 98 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999988888888888888887765543322111111000000 233556666776666554431 111
Q ss_pred hhhcceehhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005852 628 LMSNKVEISYEKERINMLRKEAENE-NQEIARLQYELEV 665 (674)
Q Consensus 628 l~s~~~~~~~Ek~~l~kL~~~~e~~-~~~~~~~k~~LE~ 665 (674)
|+..=..+..+-.||.|-.+++... |+++.++..||.-
T Consensus 99 ~~~rl~~~~ed~~Ri~KksKEi~~q~~eeLlkV~~ELqt 137 (263)
T cd07682 99 IIPRFVQISEDSGRLFKKSKEVGLQLQEDLMKVLNELYT 137 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111123777888999988888765 6678888888753
No 210
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.03 E-value=1.6e+02 Score=29.99 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHH---cccchhHHHHHHHHHHHHHHHHH
Q 005852 507 PVTNAQAAVALA---IGEASDAVNEELQRIEAESAAEN 541 (674)
Q Consensus 507 PVTRAEAAaaL~---sG~~~e~v~eEl~RlEAE~~a~~ 541 (674)
.|..+|.++--. .-++++.+..||.|.+.++..+-
T Consensus 157 ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~df 194 (224)
T cd07623 157 EIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDF 194 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554443 56678888888888888887544
No 211
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=27.00 E-value=3.8e+02 Score=29.80 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005852 585 ELERLRAEREVDKIALMKERAAIESEME 612 (674)
Q Consensus 585 ele~~r~~re~e~~~llKeraa~e~e~~ 612 (674)
|||++|..-+.+...+-.++--+|-|+|
T Consensus 149 ELEQErQKT~q~~~e~~n~qiK~EQEKQ 176 (398)
T PF05917_consen 149 ELEQERQKTEQEGIETTNNQIKVEQEKQ 176 (398)
T ss_pred hHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 5555554444444444444444444444
No 212
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.28 E-value=1.9e+02 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHH---cccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHH
Q 005852 507 PVTNAQAAVALA---IGEASDAVNEELQRIEAESAAENAVSEHSALVAEV--EKEINESFEK 563 (674)
Q Consensus 507 PVTRAEAAaaL~---sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~--ekdi~~~~~~ 563 (674)
.|..+|+++--+ .-++++.+..||.|.+-|+..+--.+-+.-+..++ ++.+-..|+.
T Consensus 167 ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~ 228 (234)
T cd07664 167 EIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665544 77888999999999999988766555543333333 4466666653
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.98 E-value=5.6e+02 Score=30.00 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005852 606 AIESEMEILSKLRREVEEQLESLMSNK 632 (674)
Q Consensus 606 a~e~e~~~L~~Lr~evde~~q~l~s~~ 632 (674)
-++++++.+.+...+...-+.++..++
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444445555555554443
No 214
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=25.93 E-value=1.1e+03 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=14.5
Q ss_pred cccCCCCcchHHHHHHHHhcCcccc
Q 005852 467 IDIDKINPDAWPALLADLTAGEQGI 491 (674)
Q Consensus 467 ~DadkIs~wA~~AVaadL~AGE~gI 491 (674)
.|.+-+...+.+.|...|...-.||
T Consensus 119 ~~~~~~~~~Y~~~v~~~l~~~k~Gl 143 (489)
T PF05262_consen 119 GDLDYFKKKYKNVVIKNLTPEKAGL 143 (489)
T ss_pred CCHHHHHHHhhHHHHhhcChhhccc
Confidence 3555555556666666666555555
No 215
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.78 E-value=1.1e+02 Score=28.45 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 005852 609 SEMEILSKLRREVEE 623 (674)
Q Consensus 609 ~e~~~L~~Lr~evde 623 (674)
.|++-|.+||..+.+
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355556666655443
No 216
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=25.71 E-value=1e+03 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005852 614 LSKLRREVEEQLESLMS 630 (674)
Q Consensus 614 L~~Lr~evde~~q~l~s 630 (674)
+..||.||-.+.=..+.
T Consensus 114 ~~elr~ei~~lAv~~A~ 130 (445)
T PRK13428 114 TRQLRLELGHESVRQAG 130 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555544444433
No 217
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.50 E-value=8.4e+02 Score=25.97 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 564 ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKE----RAAIESEMEILSKLRREVEEQLESLM 629 (674)
Q Consensus 564 ~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKe----raa~e~e~~~L~~Lr~evde~~q~l~ 629 (674)
++..=+..+...+..+..+..++...+. +-.-...|+++ +..++..+..+..++.++...-..|.
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~-~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~ 220 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISE-ELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELE 220 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333334444444444444444443332 22223334443 33333333334444444444333333
No 218
>PTZ00421 coronin; Provisional
Probab=25.37 E-value=1e+02 Score=35.18 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 640 ERINMLRKEAENENQEIARLQYELEVERKALSM 672 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~m 672 (674)
.||+.|..++...|++|.+++-.|+ ||+++.|
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 484 (493)
T PTZ00421 453 GRLQALSEKLRTQHEEIKRCREALQ-KKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4566677777777777777777765 5666554
No 219
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.31 E-value=1.3e+03 Score=28.26 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005852 606 AIESEMEILSKLRREVEEQLESL 628 (674)
Q Consensus 606 a~e~e~~~L~~Lr~evde~~q~l 628 (674)
.++...+-|..+.+++.+..+.+
T Consensus 285 ~~~~~~~~L~~~~~e~~~~~~~~ 307 (908)
T COG0419 285 ELEEKIERLEELEREIEELEEEL 307 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 220
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=25.18 E-value=1.3e+03 Score=27.97 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHH
Q 005852 606 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 655 (674)
Q Consensus 606 a~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~ 655 (674)
.|..+.|+...|+.++-.|.+-+++.+..+..=+.-+-+++.+.+.-.++
T Consensus 436 ~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 436 QINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888899998888888888877655444444444444443333
No 221
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.07 E-value=1.5e+03 Score=28.79 Aligned_cols=156 Identities=22% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHH-cccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHH---HHHHHHHHhHHHHHHHH
Q 005852 510 NAQAAVALA-IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEK------EINESFE---KELSMEREKIDVVEKMA 579 (674)
Q Consensus 510 RAEAAaaL~-sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ek------di~~~~~---~~l~~Er~~~~~vek~~ 579 (674)
|.|-|..+. ++.......- +=|+|+++-....-+..|..-..+ |+-+-|+ +++..++.-+++|++..
T Consensus 392 r~elaql~a~r~q~eka~~~---~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 392 RNELAQLLASRTQLEKAQVL---VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 580 EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARL 659 (674)
Q Consensus 580 ~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~ 659 (674)
.+.-.-|+++...+.....-+---+-++++=++.|..|-.|+..+-..|.+-.-........|+.++++--..-.++..-
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~ 548 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAR 548 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 005852 660 QYELEVERK 668 (674)
Q Consensus 660 k~~LE~Ek~ 668 (674)
.-++++++.
T Consensus 549 ~~e~~~~~~ 557 (980)
T KOG0980|consen 549 EEEREALRL 557 (980)
T ss_pred HHHHHHHHH
No 222
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=24.91 E-value=8.6e+02 Score=25.89 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 005852 528 EELQRIEA 535 (674)
Q Consensus 528 eEl~RlEA 535 (674)
.+++|++|
T Consensus 88 ~~~~~l~a 95 (423)
T TIGR01843 88 SQVLRLEA 95 (423)
T ss_pred HHHHHHHH
Confidence 33444443
No 223
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=24.76 E-value=9.2e+02 Score=26.16 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------HHHHh
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE------QLESL 628 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde------~~q~l 628 (674)
+||+.||.++=..|++=...++||+..-..-..+.+.-+-+... --+..+-|=.++|...+.+-.+ .+...
T Consensus 22 qDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~---~~~Sp~~~W~~lL~QT~~iskdh~~LSd~y~~~ 98 (253)
T cd07684 22 QDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQ---QLLSPVNCWYLVLEQTRRESRDHATLNDIFNNN 98 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC---CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999988888888888888887654432222211100000 0123355666666666555433 33333
Q ss_pred hhccee-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 005852 629 MSNKVE-ISYEKERINMLRKEAENE-NQEIARLQYELE 664 (674)
Q Consensus 629 ~s~~~~-~~~Ek~~l~kL~~~~e~~-~~~~~~~k~~LE 664 (674)
+..++. |+.+-.||.|-.+++... |+++.++..||.
T Consensus 99 ~~~rl~~~~ed~~Ri~kkskEi~~~~~eeLlkV~~EL~ 136 (253)
T cd07684 99 VIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELY 136 (253)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443 344888888888888765 567778777774
No 224
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.66 E-value=1.3e+03 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE 608 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e 608 (674)
..+...+..-.++..++|+.+++... ...+|.+-++.+=-+|+++-
T Consensus 111 e~Ls~L~~EqEerL~ELE~~le~~~e----~~~D~~kLLe~lqsdk~t~S 156 (617)
T PF15070_consen 111 EQLSRLNQEQEERLAELEEELERLQE----QQEDRQKLLEQLQSDKATAS 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccchHHH
Confidence 34444444444556666655554332 22345544444444555444
No 225
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=24.59 E-value=7.4e+02 Score=25.00 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005852 547 SALVAEV 553 (674)
Q Consensus 547 ~~l~~~~ 553 (674)
.++++..
T Consensus 36 e~Ii~eA 42 (198)
T PRK01558 36 EEIIAKA 42 (198)
T ss_pred HHHHHHH
Confidence 3333333
No 226
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=24.58 E-value=7.8e+02 Score=30.93 Aligned_cols=92 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHH
Q 005852 567 MEREKIDVVEKMAEEARQELERLRAEREVDKIAL--MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (674)
Q Consensus 567 ~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~l--lKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~k 644 (674)
.|+..+.++|++. .....+|.+|..||.|-... ..|++.++.||+.=.++ +|+ |+.+-+ -+|+.-.-.
T Consensus 915 k~~q~~~e~er~r-k~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~----eEe-qr~~qe----e~e~~l~~e 984 (1259)
T KOG0163|consen 915 KEQQQIEELERLR-KIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKA----EEE-QRKAQE----EEERRLALE 984 (1259)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHhhh----hHHHHHHHH
Confidence 3445555555443 22233344444444433332 23456666676654333 332 222222 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 645 LRKEAENENQEIARLQYELEVERK 668 (674)
Q Consensus 645 L~~~~e~~~~~~~~~k~~LE~Ek~ 668 (674)
++.++..+-++-..-|..||.||-
T Consensus 985 ~q~qla~e~eee~k~q~~~Eqer~ 1008 (1259)
T KOG0163|consen 985 LQEQLAKEAEEEAKRQNQLEQERR 1008 (1259)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444444455556666663
No 227
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.47 E-value=1.4e+03 Score=28.19 Aligned_cols=52 Identities=33% Similarity=0.330 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 613 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 613 ~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
-|+.+..||+-+=+++-.--..++.|+.++..-..+++.+++.+...+-.|+
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~ 217 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLE 217 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776666666667777777777777777766666666555544
No 228
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=24.42 E-value=7.3e+02 Score=24.88 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=9.8
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 005852 568 EREKIDVVEKMAEEARQELE 587 (674)
Q Consensus 568 Er~~~~~vek~~~~~~~ele 587 (674)
+|.+..++++++++=+..++
T Consensus 74 er~~~eELe~ileen~rkvE 93 (149)
T PF15346_consen 74 ERKKREELEKILEENRRKVE 93 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444433
No 229
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=24.09 E-value=5.7e+02 Score=30.09 Aligned_cols=91 Identities=27% Similarity=0.365 Sum_probs=13.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHH
Q 005852 519 IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID--------VVEKMAEEARQELERLR 590 (674)
Q Consensus 519 sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~--------~vek~~~~~~~ele~~r 590 (674)
+.+.-+.+.+||.||++-+.... ..++...+.+|..+|+.=.-.+.++.. --|.+++.--.|+++++
T Consensus 262 s~~~i~~l~~El~RL~~lK~~~l-----k~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 262 SLDTIEALEEELERLEELKKQNL-----KEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 45667789999999998776432 445666677999999976654444422 12445555566666666
Q ss_pred HHHH--HHHHHHhhhhhHHHHHHHHH
Q 005852 591 AERE--VDKIALMKERAAIESEMEIL 614 (674)
Q Consensus 591 ~~re--~e~~~llKeraa~e~e~~~L 614 (674)
..-+ +...+++.++-.+-.++..|
T Consensus 337 ~~~~~~k~Il~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 337 EEYESRKPILELVEKWESLWEEMEEL 362 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544 44455565555555555444
No 230
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=24.07 E-value=6.9e+02 Score=24.47 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=11.5
Q ss_pred HhhHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005852 544 SEHSALVAEVEKE---INESFEKELSMERE 570 (674)
Q Consensus 544 ~~~~~l~~~~ekd---i~~~~~~~l~~Er~ 570 (674)
....+++++.+++ |..-..++...|..
T Consensus 27 ~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~ 56 (188)
T PRK02292 27 EEAEEIIAEAEADAEEILEDREAEAEREIE 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 44444444444443
No 231
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.85 E-value=1.2e+03 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 571 KIDVVEKMAEEARQELERLRAEREVDK 597 (674)
Q Consensus 571 ~~~~vek~~~~~~~ele~~r~~re~e~ 597 (674)
+...+++.-+....+++++-.+--+++
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k 126 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHS 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 232
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.85 E-value=1.2e+03 Score=27.16 Aligned_cols=7 Identities=14% Similarity=0.634 Sum_probs=4.7
Q ss_pred ccCCCCC
Q 005852 502 FQPDKPV 508 (674)
Q Consensus 502 FqPkkPV 508 (674)
++|+...
T Consensus 37 LRPkqTA 43 (499)
T COG4372 37 LRPKQTA 43 (499)
T ss_pred cCcccce
Confidence 6788654
No 233
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=23.84 E-value=8.1e+02 Score=25.24 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 005852 654 QEIARLQYELEVERKA 669 (674)
Q Consensus 654 ~~~~~~k~~LE~Ek~A 669 (674)
+++.-+|..|..|+++
T Consensus 204 ~Ei~~lk~~l~~e~~~ 219 (247)
T PF06705_consen 204 EEIAALKNALALESQE 219 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566677777777765
No 234
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=23.78 E-value=1.3e+03 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCCCCcHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 005852 504 PDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSA 548 (674)
Q Consensus 504 PkkPVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~av~~~~~ 548 (674)
|-+|+..+|-+.. .=|..||.|.-.+.+-..|+.
T Consensus 78 ~pDPLsPgE~~l~-----------~Kl~eLE~e~k~d~v~~khn~ 111 (508)
T PF00901_consen 78 PPDPLSPGEQGLQ-----------RKLKELEDEQKEDEVREKHNK 111 (508)
T ss_pred CCCCCCHhHHHHH-----------HHHHHHHHHHhhHHHHHHHHH
Confidence 7888888886543 345555655555554445543
No 235
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.56 E-value=1.3e+03 Score=27.61 Aligned_cols=10 Identities=20% Similarity=-0.031 Sum_probs=4.2
Q ss_pred hHHHHHHHcc
Q 005852 326 VQGQALSALQ 335 (674)
Q Consensus 326 ~qIeaLAaLG 335 (674)
.+|+-|....
T Consensus 89 teieiLkSr~ 98 (726)
T PRK09841 89 PEIQLLQSRM 98 (726)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 236
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.41 E-value=1.2e+03 Score=27.16 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHh
Q 005852 533 IEAESAAENAVSEHSALVAEVEK------EINESFEKELSMEREKIDVVEKM---AEE--ARQELERLRAEREVDKIALM 601 (674)
Q Consensus 533 lEAE~~a~~av~~~~~l~~~~ek------di~~~~~~~l~~Er~~~~~vek~---~~~--~~~ele~~r~~re~e~~~ll 601 (674)
++|..+....-....+|...+++ +++.-|..+|..=+.-...+.+- +.+ .-.++.+++......+..|
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L- 268 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALL- 268 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 602 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 602 Keraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
.+-.++.=.+.+..+..++|.+++.|-.+---.-+=+.++..+...++.=++....++.+++
T Consensus 269 -~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~ 330 (560)
T PF06160_consen 269 -KNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE 330 (560)
T ss_pred -HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 237
>PF13514 AAA_27: AAA domain
Probab=23.21 E-value=1.6e+03 Score=28.36 Aligned_cols=11 Identities=27% Similarity=0.595 Sum_probs=6.9
Q ss_pred HHHHHHHHHHh
Q 005852 353 REYARWLVSAS 363 (674)
Q Consensus 353 aEFArwLVRAl 363 (674)
+++..||.+.-
T Consensus 601 ~~~~~Wl~~~~ 611 (1111)
T PF13514_consen 601 AEMRDWLARRE 611 (1111)
T ss_pred HHHHHHHHHHH
Confidence 66777766543
No 238
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=23.13 E-value=1.1e+03 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 641 RINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
.|+.-+.+++..++.+.+.+..||.+.
T Consensus 335 ~L~~~L~~a~~~l~~L~~~~~~Le~di 361 (384)
T PF03148_consen 335 ALQEKLDEAEASLQKLERTRLRLEEDI 361 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666666554
No 239
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=23.07 E-value=4.6e+02 Score=24.15 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHcccchhHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHH
Q 005852 512 QAAVALAIGEASDAVNEELQRIEAE-SAAENAVSEHSALVAEVEKEINESFEKELSME------REKIDVVEKMAEEARQ 584 (674)
Q Consensus 512 EAAaaL~sG~~~e~v~eEl~RlEAE-~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~E------r~~~~~vek~~~~~~~ 584 (674)
|+|.++-..+ |.|||.||..= ...+.....+.+-+ =|- =-|+-.+|.+| +..--++-+++.+.+.
T Consensus 3 E~a~~a~k~D----I~EEl~RL~sH~~~f~~~l~~~~~~v---Grk-LdFl~QEm~RE~NTigSKs~~~~i~~~vv~~K~ 74 (87)
T PF08340_consen 3 EVALLADKAD----ISEELVRLKSHLKQFRELLESEGEPV---GRK-LDFLLQEMNREINTIGSKSNDAEISNLVVEMKT 74 (87)
T ss_pred HHHHHHHHcc----hHHHHHHHHHHHHHHHHHHhcCCCCC---CCC-CccchhhhccHHHHHHHhhchHHHHHHHHHHHH
Confidence 5555555655 78999999742 22222222111000 000 01333444444 3444677888888899
Q ss_pred HHHHHHH
Q 005852 585 ELERLRA 591 (674)
Q Consensus 585 ele~~r~ 591 (674)
+||++|.
T Consensus 75 ~iEkiRE 81 (87)
T PF08340_consen 75 EIEKIRE 81 (87)
T ss_pred HHHHHHH
Confidence 9988875
No 240
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.62 E-value=1.3e+03 Score=28.54 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005852 639 KERINMLRKEAENENQEIAR 658 (674)
Q Consensus 639 k~~l~kL~~~~e~~~~~~~~ 658 (674)
+++|++|..++..+.+.+.+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ 667 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR 667 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999887754
No 241
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=22.61 E-value=6.4e+02 Score=23.60 Aligned_cols=67 Identities=28% Similarity=0.418 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHH--------------HHHHhhhcceehhHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHH
Q 005852 605 AAIESEMEILSKLRREVEE--------------QLESLMSNKVEISYEKERINMLRK-EAENENQEIARLQ---YELEVE 666 (674)
Q Consensus 605 aa~e~e~~~L~~Lr~evde--------------~~q~l~s~~~~~~~Ek~~l~kL~~-~~e~~~~~~~~~k---~~LE~E 666 (674)
.++..+++.+..|..|+|+ |.-||-.+|..+--|-...+.+-. .++-++++|..|+ +..|.|
T Consensus 6 ~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e 85 (94)
T PF04576_consen 6 RAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKE 85 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544 778888888888777666655533 3455555555444 556777
Q ss_pred HHHhh
Q 005852 667 RKALS 671 (674)
Q Consensus 667 k~AL~ 671 (674)
+.+|.
T Consensus 86 ~~~Le 90 (94)
T PF04576_consen 86 IQSLE 90 (94)
T ss_pred HHHHH
Confidence 77664
No 242
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.51 E-value=1.4e+03 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 641 RINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
.++.+..++..|.+.+.+|+.++|
T Consensus 455 ~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 455 EIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 243
>PRK10869 recombination and repair protein; Provisional
Probab=22.43 E-value=1.3e+03 Score=27.01 Aligned_cols=88 Identities=11% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHH
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRAER-------EVDKIALMKERAAI----ESEMEILSKLRREVEEQLES 627 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~r-------e~e~~~llKeraa~----e~e~~~L~~Lr~evde~~q~ 627 (674)
.-=+++|..|+.+..-.||+++.+..=++.+..+. -......|..-+.+ ..=.+.|..++.++++....
T Consensus 204 ~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~ 283 (553)
T PRK10869 204 PGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDE 283 (553)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888999999999998887777666663211 00111111111222 22233455555566666665
Q ss_pred hhhcceehhHHHHHHHHHH
Q 005852 628 LMSNKVEISYEKERINMLR 646 (674)
Q Consensus 628 l~s~~~~~~~Ek~~l~kL~ 646 (674)
|-.-.-.+.++.++|+.+.
T Consensus 284 l~~~~~~~~~dp~~l~~ie 302 (553)
T PRK10869 284 LRHYLDRLDLDPNRLAELE 302 (553)
T ss_pred HHHHHhhcCCCHHHHHHHH
Confidence 5544444444454444443
No 244
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.38 E-value=1.1e+03 Score=26.13 Aligned_cols=84 Identities=24% Similarity=0.165 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhccee
Q 005852 555 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 634 (674)
Q Consensus 555 kdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~ 634 (674)
...+.|-+-+=++=|.|...+++-++++.+.-..+=.+|.+.+..-+| +|-+|-+.+..+..++|+
T Consensus 27 ~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~k--------------erl~~aely~e~~~e~v~ 92 (291)
T KOG4466|consen 27 NLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRK--------------ERLRVAELYREYCVERVE 92 (291)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 455666665555556666666666665555444444444444333333 455677778888888888
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005852 635 ISYEKERINMLRKEAENEN 653 (674)
Q Consensus 635 ~~~Ek~~l~kL~~~~e~~~ 653 (674)
.-||.+ ++.-.++.|.+.
T Consensus 93 ~eYe~E-~~aAk~e~E~~~ 110 (291)
T KOG4466|consen 93 REYECE-IKAAKKEYESKK 110 (291)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 877755 344444444443
No 245
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.22 E-value=1e+03 Score=30.56 Aligned_cols=96 Identities=25% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHH
Q 005852 577 KMAEEARQELERLRAE------------REVDKIALMKER----AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 640 (674)
Q Consensus 577 k~~~~~~~ele~~r~~------------re~e~~~llKer----aa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~ 640 (674)
.++-+--.|+||||.+ -++-.....+|| --|+...+.|..++.++.+.-+.+++.-.....=+.
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 641 RINMLRKEAENENQEIARLQYELEVERKALSM 672 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~m 672 (674)
++++|.+++++..+++..++.++.-=+..|.+
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.99 E-value=2e+03 Score=29.02 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005852 640 ERINMLRKEAENENQEIARLQYE 662 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~ 662 (674)
++|+.|..+.++.++.+.++..+
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455554444555555544444
No 247
>PRK01156 chromosome segregation protein; Provisional
Probab=21.98 E-value=1.5e+03 Score=27.55 Aligned_cols=7 Identities=0% Similarity=-0.055 Sum_probs=3.8
Q ss_pred CCCCCcH
Q 005852 504 PDKPVTN 510 (674)
Q Consensus 504 PkkPVTR 510 (674)
+..+++.
T Consensus 458 c~~~~~~ 464 (895)
T PRK01156 458 CGTTLGE 464 (895)
T ss_pred CCCcCCh
Confidence 4556663
No 248
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.78 E-value=8.6e+02 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005852 533 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 572 (674)
Q Consensus 533 lEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~ 572 (674)
.|.|.+|..-..--..|..++.+.|.. |-.++..+|...
T Consensus 67 ~e~e~~a~~H~~~a~~L~~~v~~~l~~-~~~~~~~~rK~~ 105 (236)
T cd07651 67 LETESMAKSHLKFAKQIRQDLEEKLAA-FASSYTQKRKKI 105 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344455443222222333334445555 556666666544
No 249
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=21.72 E-value=7.7e+02 Score=24.21 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 575 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
.+++.+.|+.+.+..+. |..-.+.+-..+.-+....+++..+-.++.+.|..|..+
T Consensus 45 ~~~i~~~a~~~ae~ek~-r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~ 100 (198)
T PRK03963 45 AEWILRKAKTQAELEKQ-RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPED 100 (198)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444333 222233333444455556666777777777766665554
No 250
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.44 E-value=1.7e+02 Score=31.15 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005852 582 ARQELERLRA 591 (674)
Q Consensus 582 ~~~ele~~r~ 591 (674)
++.|-++||.
T Consensus 71 l~~EN~~Lr~ 80 (283)
T TIGR00219 71 LEYENYKLRQ 80 (283)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 251
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=21.41 E-value=3e+02 Score=29.91 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005852 571 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL 625 (674)
Q Consensus 571 ~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~ 625 (674)
-.++++|+-.+.-.=|--.++.+++-+..|-+|+-=++-+.|++..|..-..++=
T Consensus 90 gkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk 144 (268)
T PF11802_consen 90 GKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELK 144 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444444455777888888888888888888888888877665543
No 252
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=21.30 E-value=8.6e+02 Score=25.64 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=53.9
Q ss_pred hccCCCccccCCCCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 005852 460 LYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 539 (674)
Q Consensus 460 L~~~s~F~DadkIs~wA~~AVaadL~AGE~gII~~v~G~tg~FqPkkPVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a 539 (674)
.+.-..|.|.+..|.|+..-=. ..++|+-|||+++++.+=-. +.++ ..=--.=-+|..|
T Consensus 63 ~yNRyaf~D~d~LP~WF~eDE~------------------kH~k~~~Pvtke~v~~~k~k--~~ei-naRPIKKV~EAka 121 (215)
T PF07780_consen 63 SYNRYAFNDDDGLPDWFVEDEK------------------KHNKPQLPVTKEEVAEYKEK--LREI-NARPIKKVAEAKA 121 (215)
T ss_pred hccccccCCCCCCchhHHHHHH------------------hhcCCCCCCCHHHHHHHHHH--HHHH-cCCchHHHHHHHH
Confidence 3555679999899999887531 24789999999988764321 1100 0000011245555
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005852 540 ENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEAR 583 (674)
Q Consensus 540 ~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~ 583 (674)
|+---+.--|. .+.+=....-+..=-.||++...++++|--|.
T Consensus 122 RKK~Ra~kkle-k~kkKa~~I~~~~d~se~eK~~~i~kl~kka~ 164 (215)
T PF07780_consen 122 RKKRRAAKKLE-KAKKKAEAIADDEDMSEREKAKQIKKLYKKAK 164 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcCcCCChHHHHHHHHHHHHHhh
Confidence 54333322222 12222222222222337788888888876654
No 253
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.24 E-value=1.5e+03 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005852 579 AEEARQELERLRAEREVD 596 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e 596 (674)
.+..-.+|+.++.-+.++
T Consensus 225 ~~~~~~~l~~~~~~~~~~ 242 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKK 242 (670)
T ss_pred HHHhhhhhhhhhhHHHHH
Confidence 333444555555555444
No 254
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.00 E-value=4e+02 Score=26.28 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce
Q 005852 579 AEEARQELERLRAEREVDKIAL--------MKERAAIESEMEILSKLRREVEEQLESLMSNKV 633 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~l--------lKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~ 633 (674)
|...+.||+.|+.+|-+-...+ |+|-|.-..-++.+..+...+.+.-++|.+-++
T Consensus 13 ~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 13 RDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 4556667777766433322221 444454555566666666666666666665444
No 255
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=20.94 E-value=8e+02 Score=24.05 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCCcHHHHHHHHHcccchhHHHHHHHHHHHHHHH
Q 005852 504 PDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 539 (674)
Q Consensus 504 PkkPVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a 539 (674)
|..-.||++.+-.... +-|.+||+||+++-..
T Consensus 22 ~etD~sR~q~~e~~iq----~Rva~eL~~L~~~~~~ 53 (142)
T PF07956_consen 22 TETDSSRAQTLELHIQ----ERVAEELKRLEEEELK 53 (142)
T ss_pred CCCChhHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4445789998876654 4588999999988543
No 256
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=20.85 E-value=33 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005852 525 AVNEELQRIEAESAAEN 541 (674)
Q Consensus 525 ~v~eEl~RlEAE~~a~~ 541 (674)
-+++.|.|||.||-.-.
T Consensus 456 ~l~erl~rLe~ENk~Lk 472 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLK 472 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788999999986543
No 257
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=20.73 E-value=1.1e+03 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHcccchhHHHHHH-HHHHHHHH
Q 005852 514 AVALAIGEASDAVNEEL-QRIEAESA 538 (674)
Q Consensus 514 AaaL~sG~~~e~v~eEl-~RlEAE~~ 538 (674)
|+-+|+.+-.+.|+.|+ .++|.=+.
T Consensus 7 a~s~Y~E~k~~lvr~e~~~~~e~~~~ 32 (342)
T cd08915 7 SASAYNERQDDYVREHIVEPIEALNK 32 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999 99994443
No 258
>KOG4613 consensus Predicted component of DNA replication checkpoint response mechanism (S-M checkpoint) [General function prediction only; Cell cycle control, cell division, chromosome partitioning]
Probab=20.65 E-value=1.1e+02 Score=29.68 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHH
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 638 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~E 638 (674)
++|++|+..+..+..--+|+++.-..- ...||+=-++- .-.|.+||++-+-+++-++.+ +.+-.|
T Consensus 30 esf~Gkv~~~qtC~~ly~kL~e~hlsR------------d~~ik~Citi~--~s~lk~lRe~re~~lDd~~~~-~Q~r~e 94 (133)
T KOG4613|consen 30 ESFEGKVHETQTCQNLYKKLFEGHLSR------------DQFIKECITIV--RSQLKQLRETRESRLDDYAKE-VQVRLE 94 (133)
T ss_pred cccccccchHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHH--HHHHHHHHHHhhcCCchHHHH-HHHHhc
Confidence 578889999988888888887643221 12233222221 123556666666666666554 345566
Q ss_pred HHHHHHHHHHHHHH
Q 005852 639 KERINMLRKEAENE 652 (674)
Q Consensus 639 k~~l~kL~~~~e~~ 652 (674)
+-.+-=||+++..+
T Consensus 95 q~kl~vlQsELnVE 108 (133)
T KOG4613|consen 95 QPKLIVLQSELNVE 108 (133)
T ss_pred cchHHHHHHhcCHH
Confidence 66666666666554
No 259
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.34 E-value=1.7e+03 Score=27.65 Aligned_cols=76 Identities=28% Similarity=0.321 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH-----------HHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHH-HHHHHH
Q 005852 592 EREVDKIALMKERAAIESEMEILS-----------KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN-QEIARL 659 (674)
Q Consensus 592 ~re~e~~~llKeraa~e~e~~~L~-----------~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~-~~~~~~ 659 (674)
+|++-...|-++|+..|.+...|. .||+||- +.++-++|-.|...+..-..++-.|| .+-...
T Consensus 117 ~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~-----~~~keleir~~E~~~~~~~ae~a~kqhle~vkk 191 (769)
T PF05911_consen 117 EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH-----VLSKELEIRNEEREYSRRAAEAASKQHLESVKK 191 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355566666666666666655443 2333332 23344455555555555444444433 233344
Q ss_pred HHHHHHHHHHhhh
Q 005852 660 QYELEVERKALSM 672 (674)
Q Consensus 660 k~~LE~Ek~AL~m 672 (674)
=.-||+|=.=|++
T Consensus 192 iakLEaEC~rLr~ 204 (769)
T PF05911_consen 192 IAKLEAECQRLRA 204 (769)
T ss_pred HHHHHHHHHHHHH
Confidence 4566776655554
No 260
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.33 E-value=1.1e+03 Score=26.33 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhH
Q 005852 558 NESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 637 (674)
Q Consensus 558 ~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~ 637 (674)
.+-|+ +|..|=+...+.-+.|..-..|+.++.. .+ -.+|.+|+.-|..|+..+. ++-.. .=..
T Consensus 3 ~eEW~-eL~~efq~Lqethr~Y~qKleel~~lQ~---~C-------~ssI~~QkkrLk~L~~sLk----~~~~~--~~~e 65 (330)
T PF07851_consen 3 EEEWE-ELQKEFQELQETHRSYKQKLEELSKLQD---KC-------SSSISHQKKRLKELKKSLK----RCKKS--LSAE 65 (330)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHH----HhccC--CChh
Confidence 33443 3444444444444444444444443332 22 2356666666655554433 22111 2235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 638 EKERINMLRKEAENENQEIARLQYEL 663 (674)
Q Consensus 638 Ek~~l~kL~~~~e~~~~~~~~~k~~L 663 (674)
+++.+++|++++...+..+.+....|
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 78889999999988887777666543
No 261
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.11 E-value=1.1e+03 Score=28.19 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.5
Q ss_pred ccCCCC
Q 005852 502 FQPDKP 507 (674)
Q Consensus 502 FqPkkP 507 (674)
|+-.+|
T Consensus 234 ~~~~dP 239 (726)
T PRK09841 234 MTGDDP 239 (726)
T ss_pred EeCCCH
Confidence 444444
No 262
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.11 E-value=1.8e+02 Score=30.74 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005852 580 EEARQELERLRAEREVDKIALMKERAAIESE 610 (674)
Q Consensus 580 ~~~~~ele~~r~~re~e~~~llKeraa~e~e 610 (674)
++.+.||+++|.+|+++....-.++++.+.+
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~ 179 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEEKAEEEEK 179 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888877766666555443
No 263
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=20.03 E-value=1.3e+03 Score=28.19 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCCcHHHH-HHHHHcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHH
Q 005852 506 KPVTNAQA-AVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSME-----REKIDVVEKMA 579 (674)
Q Consensus 506 kPVTRAEA-AaaL~sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~E-----r~~~~~vek~~ 579 (674)
..+...+. ..++..-.--+.++-||.+..|.---+--++- +.+--.|+.+ ++.++.-| |+-..+++++.
T Consensus 309 ~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~ai----Ek~Rl~~~~a-~~~~~~~~~~~h~~~~~~E~~~~~ 383 (657)
T KOG1854|consen 309 ENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRAI----EKQRLQDSRA-LRAQLEYELEAHRRELQQELFKLI 383 (657)
T ss_pred hhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHhhhhHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 44444555566777777774432221111111 1000013322 23333222 23456677888
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHH-HHHHHHHHH
Q 005852 580 EEARQELERLRAEREVDKIA----LMKERAAIESEMEILS-KLRREVEEQ 624 (674)
Q Consensus 580 ~~~~~ele~~r~~re~e~~~----llKeraa~e~e~~~L~-~Lr~evde~ 624 (674)
++.+..++.+=..+-+..+. -|| .-|..|.|+|- .-+.+|+|+
T Consensus 384 ~~~~~~~~~el~~ql~~qa~ah~dhik--~vvr~q~q~~~~e~~~~~~e~ 431 (657)
T KOG1854|consen 384 EEIRSSSKNELRNQLKRQAKAHLDHIK--DVVRQQEQLLTIEFKQKLEEA 431 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHH
Confidence 88777776665554443332 233 33445555442 234455544
Done!