Query 005852
Match_columns 674
No_of_seqs 154 out of 249
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 100.0 7.6E-30 2.6E-34 243.4 16.5 169 308-520 3-174 (203)
2 4aq1_A SBSB protein; structura 99.9 3.7E-25 1.3E-29 248.5 0.0 164 308-520 2-167 (892)
3 3pyw_A S-layer protein SAP; SL 99.8 3.3E-18 1.1E-22 163.2 12.4 109 386-520 3-112 (203)
4 4aq1_A SBSB protein; structura 99.4 1.2E-14 4E-19 164.2 0.0 115 299-447 52-167 (892)
5 3oja_B Anopheles plasmodium-re 92.2 0.67 2.3E-05 49.6 10.8 68 586-660 511-578 (597)
6 2no2_A HIP-I, huntingtin-inter 89.6 8.7 0.0003 34.4 13.7 88 563-671 15-102 (107)
7 2dfs_A Myosin-5A; myosin-V, in 87.8 6.5 0.00022 46.8 15.1 82 585-669 988-1078(1080)
8 3vkg_A Dynein heavy chain, cyt 87.1 15 0.00052 48.6 18.8 95 574-668 1980-2087(3245)
9 3oja_B Anopheles plasmodium-re 87.1 2.6 9E-05 45.1 10.3 25 580-604 515-539 (597)
10 2fxo_A Myosin heavy chain, car 87.0 13 0.00045 33.7 13.4 74 594-667 40-113 (129)
11 2dfs_A Myosin-5A; myosin-V, in 86.5 3.5 0.00012 49.1 11.8 9 556-564 892-900 (1080)
12 2i1j_A Moesin; FERM, coiled-co 84.1 1.3 4.5E-05 49.1 6.4 109 562-670 320-449 (575)
13 1i84_S Smooth muscle myosin he 79.6 8.7 0.0003 45.8 11.5 13 564-576 900-912 (1184)
14 3vkg_A Dynein heavy chain, cyt 78.5 17 0.00058 48.2 14.3 14 399-412 1722-1735(3245)
15 3na7_A HP0958; flagellar bioge 78.0 56 0.0019 32.3 19.4 54 617-670 109-162 (256)
16 3ghg_A Fibrinogen alpha chain; 77.8 21 0.00072 40.0 12.9 10 556-565 82-91 (562)
17 3k29_A Putative uncharacterize 75.8 43 0.0015 32.5 12.9 64 567-636 13-76 (169)
18 1f5n_A Interferon-induced guan 74.0 51 0.0018 36.9 15.0 18 347-364 285-302 (592)
19 1f5n_A Interferon-induced guan 69.8 28 0.00096 39.0 11.7 51 562-612 486-540 (592)
20 3tnu_A Keratin, type I cytoske 69.6 44 0.0015 30.2 10.9 32 640-671 91-125 (131)
21 2i1j_A Moesin; FERM, coiled-co 60.9 4.3 0.00015 45.1 3.0 98 547-644 338-440 (575)
22 3iox_A AGI/II, PA; alpha helix 59.8 84 0.0029 35.0 12.7 14 526-539 14-27 (497)
23 2b5u_A Colicin E3; high resolu 58.0 2.4E+02 0.0082 31.7 17.3 52 552-608 325-376 (551)
24 2ocy_A RAB guanine nucleotide 56.3 1.4E+02 0.0048 28.5 14.8 24 566-589 68-91 (154)
25 2p22_A Suppressor protein STP2 55.3 92 0.0032 30.2 10.8 121 543-664 7-135 (174)
26 2zuo_A MVP, major vault protei 54.7 1.1E+02 0.0036 36.3 12.9 56 575-631 748-805 (861)
27 3oja_A Leucine-rich immune mol 54.3 1.3E+02 0.0043 31.6 12.7 18 638-655 450-467 (487)
28 3hnw_A Uncharacterized protein 53.1 49 0.0017 30.7 8.2 25 640-664 110-134 (138)
29 3oja_A Leucine-rich immune mol 51.4 2.3E+02 0.008 29.6 14.3 13 503-515 350-362 (487)
30 3na7_A HP0958; flagellar bioge 51.3 1.9E+02 0.0064 28.5 19.5 31 639-669 138-168 (256)
31 1x79_B RAB GTPase binding effe 50.7 1.2E+02 0.0041 27.7 10.1 34 611-644 65-98 (112)
32 3mq9_A Bone marrow stromal ant 50.4 2.4E+02 0.0082 29.4 16.1 116 524-667 355-470 (471)
33 3q8t_A Beclin-1; autophagy, AT 49.4 1.3E+02 0.0045 26.2 11.3 18 629-646 77-94 (96)
34 2b5u_A Colicin E3; high resolu 45.3 3.8E+02 0.013 30.2 16.1 14 528-541 295-308 (551)
35 2eqb_B RAB guanine nucleotide 44.9 1.7E+02 0.0058 26.1 13.9 58 521-592 5-62 (97)
36 3ol1_A Vimentin; structural ge 43.7 1.8E+02 0.0061 26.0 14.8 52 603-671 63-114 (119)
37 1t6f_A Geminin; coiled-coil, c 41.4 23 0.0008 26.7 3.3 22 643-664 10-31 (37)
38 3tnu_B Keratin, type II cytosk 38.8 2.2E+02 0.0074 25.5 12.5 32 640-671 89-123 (129)
39 2v71_A Nuclear distribution pr 38.2 3E+02 0.01 27.0 15.0 104 559-665 13-116 (189)
40 1wt6_A Myotonin-protein kinase 37.9 1.8E+02 0.0061 25.3 8.7 53 530-593 16-68 (81)
41 3q8t_A Beclin-1; autophagy, AT 35.1 2.3E+02 0.0077 24.7 10.7 72 579-657 9-80 (96)
42 3bas_A Myosin heavy chain, str 34.6 2.1E+02 0.0074 24.3 9.2 31 594-631 41-71 (89)
43 3i00_A HIP-I, huntingtin-inter 34.2 1.5E+02 0.0052 27.0 8.2 40 572-611 17-56 (120)
44 2eqb_B RAB guanine nucleotide 32.8 2.7E+02 0.0092 24.9 10.3 23 614-636 49-71 (97)
45 4egx_A Kinesin-like protein KI 32.7 61 0.0021 31.0 5.6 13 555-567 22-34 (184)
46 3swk_A Vimentin; cytoskeleton, 31.8 1.2E+02 0.004 26.0 6.7 39 628-666 12-50 (86)
47 3lay_A Zinc resistance-associa 31.4 1.8E+02 0.006 28.0 8.6 32 637-668 110-143 (175)
48 3qh9_A Liprin-beta-2; coiled-c 31.1 1.3E+02 0.0045 26.2 6.8 52 611-663 25-77 (81)
49 3mov_A Lamin-B1; LMNB1, B-type 31.0 2.6E+02 0.0088 24.4 8.9 74 592-671 9-85 (95)
50 3ghg_A Fibrinogen alpha chain; 30.9 6.3E+02 0.021 28.6 14.8 22 605-626 138-159 (562)
51 3i00_A HIP-I, huntingtin-inter 29.3 2.2E+02 0.0075 25.9 8.4 18 601-623 62-79 (120)
52 3iyk_A VP5; icosahedral virus; 26.9 7.2E+02 0.024 27.9 14.8 58 504-572 84-145 (526)
53 3vem_A Helicase protein MOM1; 26.2 2.2E+02 0.0075 26.2 7.7 47 583-630 38-86 (115)
54 2inr_A DNA topoisomerase 4 sub 24.3 3.5E+02 0.012 30.2 10.5 46 622-668 437-482 (514)
55 2jee_A YIIU; FTSZ, septum, coi 24.0 3E+02 0.01 23.8 7.8 40 612-651 6-45 (81)
56 2xnx_M M protein, M1-BC1; cell 23.9 1.5E+02 0.005 28.3 6.4 31 601-631 65-95 (146)
57 4gkw_A Spindle assembly abnorm 23.5 4.8E+02 0.016 24.8 15.2 101 564-674 40-160 (167)
58 1gmj_A ATPase inhibitor; coile 23.4 2.4E+02 0.0083 24.6 7.1 43 608-660 36-78 (84)
59 4fla_A Regulation of nuclear P 22.7 4.8E+02 0.016 24.5 11.9 21 427-447 14-34 (152)
60 2wq1_A General control protein 22.5 1.1E+02 0.0036 22.8 4.0 25 647-671 3-27 (33)
61 3haj_A Human pacsin2 F-BAR; pa 22.3 7.3E+02 0.025 26.4 17.2 31 606-636 193-223 (486)
62 3c3g_A Alpha/beta peptide with 21.8 1.1E+02 0.0038 22.7 4.0 25 647-671 3-27 (33)
63 1t3j_A Mitofusin 1; coiled coi 21.3 2.2E+02 0.0076 25.3 6.6 53 613-665 37-89 (96)
64 2p22_A Suppressor protein STP2 20.9 1.9E+02 0.0063 28.1 6.6 15 573-588 12-26 (174)
65 3v6i_A V-type ATP synthase sub 20.2 5.2E+02 0.018 23.9 16.3 52 593-648 58-109 (187)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.97 E-value=7.6e-30 Score=243.43 Aligned_cols=169 Identities=20% Similarity=0.173 Sum_probs=135.2
Q ss_pred cccccC-CCceeeccccChhHHHHHHHccccccCC-CCcCCCCCccHHHHHHHHHHHhcccccccccccccccccccCCC
Q 005852 308 AALQVL-PGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTD 385 (674)
Q Consensus 308 ~af~v~-s~rv~Vp~a~D~~qIeaLAaLGILkg~E-gtF~Pn~pITRaEFArwLVRAls~L~R~p~~kI~Pam~is~st~ 385 (674)
.+|.|. .+|| + ...|+.|+.+|||+|++ ++|+|+++|||+||+.||+|+++. + ......
T Consensus 3 ~~F~Dv~~~~w----a--~~~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~---~~~~~~ 63 (203)
T 3pyw_A 3 KTFPDVPADHW----G--IDSINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------P---IDKDAK 63 (203)
T ss_dssp CCBTTBCTTST----T--HHHHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------C---CCTTCC
T ss_pred CCCcCCCCCcH----H--HHHHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------C---CCcCCC
Confidence 468555 7766 4 67999999999999986 799999999999999999999872 1 112234
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHHHHHH-HhhcCCchhhhhhhccCC
Q 005852 386 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLPEANKKILYQLS 464 (674)
Q Consensus 386 ~AF~DV~~sdpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAvwkVa-Le~~~Lp~ad~k~L~~~s 464 (674)
..|+||+ +||++.+|+.|+++|||.|+ +++ |+|+++|||+||+.|+++ +++.. .. ......
T Consensus 64 ~~F~Dv~-~~w~~~~i~~a~~~Gii~g~-----------~~~-F~P~~~iTR~e~a~~l~r~~~~~~---~~--~~~~~~ 125 (203)
T 3pyw_A 64 PSFADSQ-GQWYTPFIAAVEKAGVIKGT-----------GNG-FEPNGKIDRVSMASLLVEAYKLDT---KV--NGTPAT 125 (203)
T ss_dssp CSCGGGC-SSTTHHHHHHHHHTTSSCCC-----------SSC-CCTTSBCBHHHHHHHHHHHHTGGG---GS--SSCCCC
T ss_pred CCCCCCC-cHHHHHHHHHHHHCcCeecC-----------CCC-CCCCCcccHHHHHHHHHHHhcccc---cc--ccccCC
Confidence 6899995 89999999999999999997 234 999999999999998774 33221 10 011235
Q ss_pred CccccCCCCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcc
Q 005852 465 GFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 520 (674)
Q Consensus 465 ~F~DadkIs~wA~~AVaadL~AGE~gII~~v~G~tg~FqPkkPVTRAEAAaaL~sG 520 (674)
.|.|...| .|+.++|...+.. ||+ .|+.+.|+|++++||+|||++|++-
T Consensus 126 ~f~D~~~i-~wa~~~v~~~~~~---Gi~---~g~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 126 KFKDLETL-NWGKEKANILVEL---GIS---VGTGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp CCHHHHTC-SSSHHHHHHHHHT---TCS---CCCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred CCCCCCcc-HHHHHHHHHHHHC---cCE---eCCCCCcCCCCCCcHHHHHHHHHHH
Confidence 79999999 8999999887765 465 5655689999999999999999964
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.89 E-value=3.7e-25 Score=248.47 Aligned_cols=164 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred cccccCCCceeeccccChhHHHHHHHccccccCC-CCcCCCCCccHHHHHHHHHHHhcccccccccccccccccccCCCC
Q 005852 308 AALQVLPGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDL 386 (674)
Q Consensus 308 ~af~v~s~rv~Vp~a~D~~qIeaLAaLGILkg~E-gtF~Pn~pITRaEFArwLVRAls~L~R~p~~kI~Pam~is~st~~ 386 (674)
++|.|+++|| ...|+.|+.+|||+|++ +.|+|+++|||+|||.||+|+++. . + ......
T Consensus 2 ASFsDV~gHW-------keaIe~LaekGIIkGY~DGTFrPdkpITRAEFAaMLvRALGL-e--------~----~saas~ 61 (892)
T 4aq1_A 2 ASFTDVAPQY-------KDAIDFLVSTGATKGKTETKFGVYDEITRLDAAVILARVLKL-D--------V----GNAKDA 61 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCHHH-------HHHHHHHHHCCCEeeCCCCcCCCCcchhHHHHHHHHHHHhCC-C--------c----ccccCC
Confidence 3788888864 46899999999999986 899999999999999999999862 1 1 112346
Q ss_pred CccCCCCCCCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhhcCCchhhhhhhccCCCc
Q 005852 387 AFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGF 466 (674)
Q Consensus 387 AF~DV~~sdpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAvwkVaLe~~~Lp~ad~k~L~~~s~F 466 (674)
.|.||+. ||+.||++|+++|||.|+. +++|+|+++|||+|||.|++++- +++... ....|
T Consensus 62 sFSDVp~--Wya~yIaaAveaGIIsGy~-----------DGTFrPnqpITRAEaAvMLvRAL--gL~~~~-----~~ssF 121 (892)
T 4aq1_A 62 GFTDVPK--DRAKYVNALVEAGVLNGKA-----------PGKFGAYDPLTRVEMAKIIANAH--KLKADD-----VKLPF 121 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCCH--HHHHHHHHHHHCCCEecCC-----------CCcCCCCCCccHHHHHHHHHHHh--CCCCcc-----ccCCc
Confidence 8999964 7789999999999999972 24799999999999999876432 222211 23579
Q ss_pred cccCCCCcchHHHHHHHHhcCcccceecccCC-CccccCCCCCcHHHHHHHHHcc
Q 005852 467 IDIDKINPDAWPALLADLTAGEQGIIALAFGC-TRLFQPDKPVTNAQAAVALAIG 520 (674)
Q Consensus 467 ~DadkIs~wA~~AVaadL~AGE~gII~~v~G~-tg~FqPkkPVTRAEAAaaL~sG 520 (674)
.|...+ |+ ++|..+... ||+ .|+ ++.|+|++++||+|||+||++.
T Consensus 122 kDV~s~--WA-eaIaaAve~---GII---sGy~DGtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 122 TDVNDT--WA-PYVKALYKY---EVT---KGKTPTSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp -------------------------------------------------------
T ss_pred cCCcHH--HH-HHHHHHHHc---CCe---ecCCCCcCCCCCcccHHHHHHHHHHH
Confidence 999865 88 888776644 565 553 4689999999999999999965
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.76 E-value=3.3e-18 Score=163.25 Aligned_cols=109 Identities=23% Similarity=0.291 Sum_probs=87.5
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhhcCCchhhhhhhccCCC
Q 005852 386 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 465 (674)
Q Consensus 386 ~AF~DV~~sdpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAvwkVaLe~~~Lp~ad~k~L~~~s~ 465 (674)
..|+||+.+||++.+|+.+++.|||.|+. + ++|+|+++|||+|++.|++++- +++... .....
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~~---------d--g~F~P~~~iTR~e~a~~l~r~~--~~~~~~----~~~~~ 65 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGND---------K--GMFEPGKELTRAEAATMMAQIL--NLPIDK----DAKPS 65 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCCT---------T--SCCCTTCBCBHHHHHHHHHHHT--TCCCCT----TCCCS
T ss_pred CCCcCCCCCcHHHHHHHHHHHCcCEecCC---------C--CeECCCCCchHHHHHHHHHHHh--CCCCCc----CCCCC
Confidence 47999999999999999999999999972 3 3799999999999999877543 233211 12356
Q ss_pred ccccCCCCcchHHHHHHHHhcCcccceecccCC-CccccCCCCCcHHHHHHHHHcc
Q 005852 466 FIDIDKINPDAWPALLADLTAGEQGIIALAFGC-TRLFQPDKPVTNAQAAVALAIG 520 (674)
Q Consensus 466 F~DadkIs~wA~~AVaadL~AGE~gII~~v~G~-tg~FqPkkPVTRAEAAaaL~sG 520 (674)
|.|+. +.|+.++|..+... ||| .|+ ++ |+|+++|||+|+|++|++.
T Consensus 66 F~Dv~--~~w~~~~i~~a~~~---Gii---~g~~~~-F~P~~~iTR~e~a~~l~r~ 112 (203)
T 3pyw_A 66 FADSQ--GQWYTPFIAAVEKA---GVI---KGTGNG-FEPNGKIDRVSMASLLVEA 112 (203)
T ss_dssp CGGGC--SSTTHHHHHHHHHT---TSS---CCCSSC-CCTTSBCBHHHHHHHHHHH
T ss_pred CCCCC--cHHHHHHHHHHHHC---cCe---ecCCCC-CCCCCcccHHHHHHHHHHH
Confidence 99985 78999999887765 465 564 45 9999999999999999853
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.43 E-value=1.2e-14 Score=164.24 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred CcCCCCccccccccCCCceeeccccChhHHHHHHHccccccCC-CCcCCCCCccHHHHHHHHHHHhcccccccccccccc
Q 005852 299 GIPAPSVVSAALQVLPGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPA 377 (674)
Q Consensus 299 gipAPSa~s~af~v~s~rv~Vp~a~D~~qIeaLAaLGILkg~E-gtF~Pn~pITRaEFArwLVRAls~L~R~p~~kI~Pa 377 (674)
|++........|.+.+..+ ...|.+++.+|||.|++ +.|+|+++|||+|||.||+|+++ + +.
T Consensus 52 GLe~~saas~sFSDVp~Wy-------a~yIaaAveaGIIsGy~DGTFrPnqpITRAEaAvMLvRALg-L---------~~ 114 (892)
T 4aq1_A 52 KLDVGNAKDAGFTDVPKDR-------AKYVNALVEAGVLNGKAPGKFGAYDPLTRVEMAKIIANAHK-L---------KA 114 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccCCCCCcCCHHH-------HHHHHHHHHCCCEecCCCCcCCCCCCccHHHHHHHHHHHhC-C---------CC
Confidence 4443333345887766522 36899999999999986 89999999999999999999986 2 11
Q ss_pred cccccCCCCCccCCCCCCCChHHHHHHHHcCCccCCcccccCCCCCCCCcccCCCCcCcHHHHHHHHHHH
Q 005852 378 MYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMAL 447 (674)
Q Consensus 378 m~is~st~~AF~DV~~sdpyf~yIQAAAEAGIIsG~LSg~~~~~~~dG~~~FkPDspITRQELAvwkVaL 447 (674)
.. ....|.|++ ++|+ .||++|+++|||.|+. + +.|+|+++|||+|||.|+.++
T Consensus 115 ---~~-~~ssFkDV~-s~WA-eaIaaAve~GIIsGy~---------D--GtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 115 ---DD-VKLPFTDVN-DTWA-PYVKALYKYEVTKGKT---------P--TSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ---cc-ccCCccCCc-HHHH-HHHHHHHHcCCeecCC---------C--CcCCCCCcccHHHHHHHHHHH
Confidence 11 346899997 5898 9999999999999972 2 369999999999999987654
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.17 E-value=0.67 Score=49.61 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 586 LERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (674)
Q Consensus 586 le~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k 660 (674)
..+++....+-...+.+.+.+++.+++.+-.|+.|++++-.++-. .|++++.|..+++...+++.++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~-------~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN-------KRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444555666677777777777777776555433 34555555555555555554444
No 6
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=89.62 E-value=8.7 Score=34.39 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=63.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHH
Q 005852 563 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 642 (674)
Q Consensus 563 ~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l 642 (674)
+.|...|.-..++++.-.+....+++++ ...-.-++.++..|-.|+.|+..-.+-|-. |
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~~~~~----------~~~~~k~~eq~~~le~lk~eL~~~~~el~~-----------l 73 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSLERIS----------DQGQRKTQEQLEVLESLKQELATSQRELQV-----------L 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 5677788888888888888888888776 223334566778888888888877665544 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 643 NMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 643 ~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
+.-+...+.....+......|+.||.+|.
T Consensus 74 q~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 74 QGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666667777788899998875
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.82 E-value=6.5 Score=46.84 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH--------H-HHH
Q 005852 585 ELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN--------E-NQE 655 (674)
Q Consensus 585 ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~--------~-~~~ 655 (674)
+|+++-.+-++++..+.||+.+++...+ +|+.++.+++..|-.++...-...+.|+.+..+.+. . .++
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~---~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~ 1064 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWAD---KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555556666666644433 333455566666665555554444444432222222 1 134
Q ss_pred HHHHHHHHHHHHHH
Q 005852 656 IARLQYELEVERKA 669 (674)
Q Consensus 656 ~~~~k~~LE~Ek~A 669 (674)
-..++.++|.|+++
T Consensus 1065 ~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1065 TKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44566666666665
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.08 E-value=15 Score=48.59 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHHHHHhhhcce---ehhHHHH
Q 005852 574 VVEKMAEEARQELERLRAEREVDKIALM----------KERAAIESEMEILSKLRREVEEQLESLMSNKV---EISYEKE 640 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~re~e~~~ll----------Keraa~e~e~~~L~~Lr~evde~~q~l~s~~~---~~~~Ek~ 640 (674)
+.|+-+++...|.+..|.+-++++++-+ +-.+.++.-++.|..++.++.+.-++|+.-+. +.+.||+
T Consensus 1980 ~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~ 2059 (3245)
T 3vkg_A 1980 ELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555544422 11233344455555566555554444444444 4466888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 641 RINMLRKEAENENQEIARLQYELEVERK 668 (674)
Q Consensus 641 ~l~kL~~~~e~~~~~~~~~k~~LE~Ek~ 668 (674)
+|+.-...++.+.+...+|-.-|..||.
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 8888888888888888888888888875
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.08 E-value=2.6 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005852 580 EEARQELERLRAEREVDKIALMKER 604 (674)
Q Consensus 580 ~~~~~ele~~r~~re~e~~~llKer 604 (674)
++-..++++.-...+++...+.++.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKET 539 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcch
Confidence 3333333333333333333333333
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.96 E-value=13 Score=33.67 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 594 EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 594 e~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
+..+..++.++..+--+-+.=..+-.+.++++.+|...|++.-..-.-++.-+.+.+..+..+...+-.|+.+.
T Consensus 40 e~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666555555555666777777777777666544444444444444444444444444444443
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.54 E-value=3.5 Score=49.13 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 005852 556 EINESFEKE 564 (674)
Q Consensus 556 di~~~~~~~ 564 (674)
-|+..|+..
T Consensus 892 ~iQs~~R~~ 900 (1080)
T 2dfs_A 892 YLQCCYRRM 900 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345556543
No 12
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=84.08 E-value=1.3 Score=49.08 Aligned_cols=109 Identities=22% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIAL---------M-KERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~l---------l-Keraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
..+|..||....++|+--.+...-|.++..+-.....+| | .++--.+.|.++|.+-+.|.+++.++|...
T Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 320 REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555444443333333 3 334456778899999999999999999998
Q ss_pred ceehhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 632 KVEISYEKERIN-----------MLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 632 ~~~~~~Ek~~l~-----------kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
...-..||++|+ +|..+.+.+-.+..++|.+|+.=++|+
T Consensus 400 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~ 449 (575)
T 2i1j_A 400 KNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQ 449 (575)
T ss_dssp ------------------------------------------CHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888875 444445555555555555554444443
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.63 E-value=8.7 Score=45.78 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHHHHHhHHHHH
Q 005852 564 ELSMEREKIDVVE 576 (674)
Q Consensus 564 ~l~~Er~~~~~ve 576 (674)
++..++....+++
T Consensus 900 ~L~~e~~~l~~~e 912 (1184)
T 1i84_S 900 KLQAETELYAEAE 912 (1184)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444333333
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.55 E-value=17 Score=48.22 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=7.1
Q ss_pred HHHHHHHHcCCccC
Q 005852 399 SSIQGLAEAGLISS 412 (674)
Q Consensus 399 ~yIQAAAEAGIIsG 412 (674)
.+|..+...|=|+|
T Consensus 1722 E~IN~lL~sGEVP~ 1735 (3245)
T 3vkg_A 1722 ERMNTLLAGGEVPG 1735 (3245)
T ss_dssp HHHHHHHHHSCCTT
T ss_pred HHHHHHhccCCccc
Confidence 44555555555554
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.05 E-value=56 Score=32.25 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005852 617 LRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 670 (674)
Q Consensus 617 Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL 670 (674)
|..++-+..+++-..+..+..-+.++..+..++.....++.....+++.|.++|
T Consensus 109 lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555666666777666666666666666666665554
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.78 E-value=21 Score=39.97 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q 005852 556 EINESFEKEL 565 (674)
Q Consensus 556 di~~~~~~~l 565 (674)
|+.+++...+
T Consensus 82 dseqy~k~~~ 91 (562)
T 3ghg_A 82 DSHSLTTNIM 91 (562)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6666665443
No 17
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=75.79 E-value=43 Score=32.54 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=37.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehh
Q 005852 567 MEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 636 (674)
Q Consensus 567 ~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~ 636 (674)
.=+.+.++.||.+-..+..||.++..-.+.-+++=|-+ .+-++=+.-||+++|. .-.|+++-.|
T Consensus 13 ~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~---~h~~~k~~qlre~~d~---gtt~~~i~~m 76 (169)
T 3k29_A 13 IKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVK---NHYMQKIRQLREQLDD---GTTSDAILKM 76 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 34567778888888888888877766555444443322 2333446666766553 3444444433
No 18
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=74.03 E-value=51 Score=36.87 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=12.2
Q ss_pred CCCccHHHHHHHHHHHhc
Q 005852 347 GDLCIRREYARWLVSASS 364 (674)
Q Consensus 347 n~pITRaEFArwLVRAls 364 (674)
+.++|=..|+.++-...+
T Consensus 285 g~~vtG~~L~~l~~~yv~ 302 (592)
T 1f5n_A 285 GIQVNGPRLESLVLTYVN 302 (592)
T ss_dssp TEECBHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHH
Confidence 468888888877654443
No 19
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=69.80 E-value=28 Score=38.96 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH
Q 005852 562 EKELSMEREKIDVVEK---MAEEARQELERLRAEREVDKIALMKE-RAAIESEME 612 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek---~~~~~~~ele~~r~~re~e~~~llKe-raa~e~e~~ 612 (674)
+++|..||.|.+++|+ ++++-..++++....+++...+-++. +.-||.|++
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666553 33344455555555555544444332 223554444
No 20
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.55 E-value=44 Score=30.24 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 005852 640 ERINMLRKEAEN---ENQEIARLQYELEVERKALS 671 (674)
Q Consensus 640 ~~l~kL~~~~e~---~~~~~~~~k~~LE~Ek~AL~ 671 (674)
..|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 91 ~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 91 EQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666664 45789999999999987654
No 21
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.89 E-value=4.3 Score=45.08 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=11.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005852 547 SALVAEVEK--EINESFEKELSMEREKIDVVE---KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREV 621 (674)
Q Consensus 547 ~~l~~~~ek--di~~~~~~~l~~Er~~~~~ve---k~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~ev 621 (674)
.+|..++.+ +=.+.+.+.|.+-.+.+..++ +.+++....|++.+.+-+.++..|..+...-+.+++.|..=..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~ 417 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAK 417 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444332 333445555555555544444 345566667777777777777777777666677777777777777
Q ss_pred HHHHHHhhhcceehhHHHHHHHH
Q 005852 622 EEQLESLMSNKVEISYEKERINM 644 (674)
Q Consensus 622 de~~q~l~s~~~~~~~Ek~~l~k 644 (674)
+....+|..++-.=..|..+++.
T Consensus 418 ~~~~~~~~~~~~~~~~e~~~~~~ 440 (575)
T 2i1j_A 418 QEEVSRIQQEVELKDSETRRLQE 440 (575)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666665566555544
No 22
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.82 E-value=84 Score=34.99 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 005852 526 VNEELQRIEAESAA 539 (674)
Q Consensus 526 v~eEl~RlEAE~~a 539 (674)
...||+|+++.|..
T Consensus 14 yq~elarvqkana~ 27 (497)
T 3iox_A 14 YQTELARVQKANAD 27 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666655543
No 23
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.95 E-value=2.4e+02 Score=31.68 Aligned_cols=52 Identities=12% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 005852 552 EVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE 608 (674)
Q Consensus 552 ~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e 608 (674)
+.+.++++- ++-..+-++|..-.+++|.++|.+|.. --+-++..++++-...
T Consensus 325 ~a~ael~~a-~k~~a~~~er~~~t~~~~~~~~~~~~~----~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 325 RARAELNQA-NEDVARNQERQAKAVQVYNSRKSELDA----ANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHh----hhhHHHHHHHhhhhhh
Confidence 334455432 333444456666777888888888843 3344455555554444
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.30 E-value=1.4e+02 Score=28.47 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=9.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 005852 566 SMEREKIDVVEKMAEEARQELERL 589 (674)
Q Consensus 566 ~~Er~~~~~vek~~~~~~~ele~~ 589 (674)
.+||.+..++|+-....-.|||.|
T Consensus 68 ~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 68 AKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 25
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=55.33 E-value=92 Score=30.17 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=78.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005852 543 VSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA----RQELERLRAEREVDKIALMKERAAIESEMEILSKLR 618 (674)
Q Consensus 543 v~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~----~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr 618 (674)
-..|.+|++.++.-|+++.+.-....++.++..+..++.+ .++|..-+..=+.....|-+++..++.+.+.|..=.
T Consensus 7 ~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 7 PTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889988999999999998888988888887777444 445555555555555556666666666666555533
Q ss_pred HHHHHHHHHhh-hcc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 619 REVEEQLESLM-SNK---VEISYEKERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 619 ~evde~~q~l~-s~~---~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
.++++.... . ++. =+++.+..-+.+..=++-.+..+|.++=|.|.
T Consensus 87 ~k~~e~~~~-~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~ 135 (174)
T 2p22_A 87 AKVQQFSST-SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS 135 (174)
T ss_dssp HHHHHHTTS-SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211 1 111 12344556666777788888888888888875
No 26
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=54.67 E-value=1.1e+02 Score=36.28 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHH-HHHHHHHHHhhhc
Q 005852 575 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEME-ILSKLR-REVEEQLESLMSN 631 (674)
Q Consensus 575 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~-~L~~Lr-~evde~~q~l~s~ 631 (674)
.+.+-.++-.||++++..|+.|+ .+.|+++.+|-++. .|..+. ..+..|.+.|-.+
T Consensus 748 a~a~~i~~~ael~~~~~~~~~el-~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~ 805 (861)
T 2zuo_A 748 AQALAIETEAELERVKKVREMEL-IYARAQLELEVSKAQQLANVEAKKFKEMTEALGPG 805 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 34455666778888888887775 57788888876653 344443 2344555555444
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.34 E-value=1.3e+02 Score=31.64 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005852 638 EKERINMLRKEAENENQE 655 (674)
Q Consensus 638 Ek~~l~kL~~~~e~~~~~ 655 (674)
|++|++|+..++..+-++
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 450 ENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHh
Confidence 455555555555444433
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.05 E-value=49 Score=30.68 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 640 ERINMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 640 ~~l~kL~~~~e~~~~~~~~~k~~LE 664 (674)
..+++|+.++..=+..+.+|+.+|+
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.43 E-value=2.3e+02 Score=29.59 Aligned_cols=13 Identities=23% Similarity=-0.023 Sum_probs=5.5
Q ss_pred cCCCCCcHHHHHH
Q 005852 503 QPDKPVTNAQAAV 515 (674)
Q Consensus 503 qPkkPVTRAEAAa 515 (674)
.|...+++-+...
T Consensus 350 s~~~~~~~~~~~~ 362 (487)
T 3oja_A 350 TVIDQVTLRKQAK 362 (487)
T ss_dssp CCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 3444444444433
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.33 E-value=1.9e+02 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 639 KERINMLRKEAENENQEIARLQYELEVERKA 669 (674)
Q Consensus 639 k~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~A 669 (674)
+..+..+..++.....++..-...|..+|+.
T Consensus 138 ~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~ 168 (256)
T 3na7_A 138 EKLALELESLVENEVKNIKETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333334444433
No 31
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=50.69 E-value=1.2e+02 Score=27.65 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHH
Q 005852 611 MEILSKLRREVEEQLESLMSNKVEISYEKERINM 644 (674)
Q Consensus 611 ~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~k 644 (674)
.+.++.++.+|-++|+.|+-.|-.|.+|=.||++
T Consensus 65 qq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 65 QQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888777777776555543
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.40 E-value=2.4e+02 Score=29.39 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 524 DAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKE 603 (674)
Q Consensus 524 e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKe 603 (674)
+++.+.+.++-.-.+.-+.+.. .+.+++++-|++.+.+. +-|...-.++|-+.+++..|-++|+.---++...+-=
T Consensus 355 ~~~~~~~~~vl~G~~t~eeal~--~~~~~i~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 355 YAVRTAVINAASGRQTVDEALK--DAQTRITAARDGLRAVM--EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHH--HHHHHHHHHHHhhHHHH--HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 604 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 667 (674)
Q Consensus 604 raa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek 667 (674)
++.+|.++ .|.+. ||++|..++...++.+.++..+++.-|
T Consensus 431 ~~~~~~~~-------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 431 MASLDAEK-------------AQGQK-----------KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHH-------------HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.42 E-value=1.3e+02 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=8.7
Q ss_pred hhcceehhHHHHHHHHHH
Q 005852 629 MSNKVEISYEKERINMLR 646 (674)
Q Consensus 629 ~s~~~~~~~Ek~~l~kL~ 646 (674)
-|-...|.|-+..|+||+
T Consensus 77 ~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 77 KSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444455555555554
No 34
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=45.27 E-value=3.8e+02 Score=30.19 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 005852 528 EELQRIEAESAAEN 541 (674)
Q Consensus 528 eEl~RlEAE~~a~~ 541 (674)
++-.|+|+|+-+++
T Consensus 295 elkqrqeee~r~~q 308 (551)
T 2b5u_A 295 QVKQRQDEENRRQQ 308 (551)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44567777776443
No 35
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.92 E-value=1.7e+02 Score=26.11 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005852 521 EASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAE 592 (674)
Q Consensus 521 ~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~ 592 (674)
..-+...++|.+|+.+..- ++.++++ +-.++..||.+...+|+-....-+|||.|-+-
T Consensus 5 ~~~e~lre~l~~le~~~~~-------------~~~e~~~-L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSD-------------RDDEVKR-LREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------------hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888866543 2333433 45677888888888888888888888888754
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.73 E-value=1.8e+02 Score=26.03 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 603 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 603 eraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
.|..+|.+ |..||..||+..=. |+ .|..+++.=.++|.=+|.--|.|.+.|+
T Consensus 63 ~r~~~E~d---i~~lrK~lD~~~l~----r~----------dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 63 QREEAENT---LQSFRQDVDNASLA----RL----------DLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhcccHHHHH----HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544 45567777654211 11 1344444444555555555555655553
No 37
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.42 E-value=23 Score=26.71 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005852 643 NMLRKEAENENQEIARLQYELE 664 (674)
Q Consensus 643 ~kL~~~~e~~~~~~~~~k~~LE 664 (674)
+||.++++.|.++|.+||.+-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 6899999999999999998643
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.79 E-value=2.2e+02 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 005852 640 ERINMLRKEAEN---ENQEIARLQYELEVERKALS 671 (674)
Q Consensus 640 ~~l~kL~~~~e~---~~~~~~~~k~~LE~Ek~AL~ 671 (674)
..|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 89 ~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 89 EALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666654 45789999999999987754
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=38.18 E-value=3e+02 Score=27.00 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHH
Q 005852 559 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 638 (674)
Q Consensus 559 ~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~E 638 (674)
+||.++...=+.+...++.-|.+-...=..+.++-|+++..+=|.-..+... +.+|+.|++..=.++..-+.+....
T Consensus 13 ~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~---~~~L~~E~e~~k~K~~~~~~e~~~~ 89 (189)
T 2v71_A 13 AYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD---NQRLKYEVEALKEKLEHQYAQSYKQ 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 639 KERINMLRKEAENENQEIARLQYELEV 665 (674)
Q Consensus 639 k~~l~kL~~~~e~~~~~~~~~k~~LE~ 665 (674)
...|++-...+...++.+..---+||+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.90 E-value=1.8e+02 Score=25.33 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005852 530 LQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAER 593 (674)
Q Consensus 530 l~RlEAE~~a~~av~~~~~l~~~~ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~r~~r 593 (674)
...|++|=.|.+++..+-.-+ +.-|..|..+|. +.|+..++..+|+++++.+=
T Consensus 16 QSALeaEIqAKQ~i~EELs~v----r~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAI----RTDNQNFASQLR-------EAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 356667766666666542222 344445555544 45555555566666665443
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.13 E-value=2.3e+02 Score=24.69 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHH
Q 005852 579 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 657 (674)
Q Consensus 579 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~ 657 (674)
++..+..|....+.-..++..+.|+|++++.+...|-. .+++|-..--.|..|...+..-+-+.+.+.+.+.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~-------E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA-------EAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777888888888888888766543 3334444444555566666655556666655543
No 42
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.61 E-value=2.1e+02 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 594 EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 594 e~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
+.....|+.++..+.-| -.+.+++..+|...
T Consensus 41 e~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~ 71 (89)
T 3bas_A 41 EEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHH
Confidence 34445555555555444 34555555555433
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.23 E-value=1.5e+02 Score=27.00 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 005852 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 611 (674)
Q Consensus 572 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~ 611 (674)
|+.+-+-.+..+.||++++.+.......|...=..+++|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666665555555555444444444443
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.78 E-value=2.7e+02 Score=24.86 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhcceehh
Q 005852 614 LSKLRREVEEQLESLMSNKVEIS 636 (674)
Q Consensus 614 L~~Lr~evde~~q~l~s~~~~~~ 636 (674)
+..+..||++..-.|-.+==+++
T Consensus 49 ~~~ie~ElEeLTasLFeEAN~MV 71 (97)
T 2eqb_B 49 ADKLNKEVEDLTASLFDEANNMV 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777765533333
No 45
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=32.69 E-value=61 Score=31.01 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 005852 555 KEINESFEKELSM 567 (674)
Q Consensus 555 kdi~~~~~~~l~~ 567 (674)
++++..|++||..
T Consensus 22 ~el~~tWeeKl~~ 34 (184)
T 4egx_A 22 AELNETWEEKLRR 34 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 5888999998874
No 46
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.78 E-value=1.2e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=15.7
Q ss_pred hhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 628 LMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVE 666 (674)
Q Consensus 628 l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~E 666 (674)
+..+|..+.-|.++++....+...|-+.=..++..+|.+
T Consensus 12 l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d 50 (86)
T 3swk_A 12 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443433333333333333
No 47
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.36 E-value=1.8e+02 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 005852 637 YEKERINMLRKEAENENQEIA--RLQYELEVERK 668 (674)
Q Consensus 637 ~Ek~~l~kL~~~~e~~~~~~~--~~k~~LE~Ek~ 668 (674)
++...|.+|.+++...+..+. ++++.+|..|+
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777776665554 34455555444
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.12 E-value=1.3e+02 Score=26.15 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHH-HHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 611 MEILSKLRREVEEQL-ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 663 (674)
Q Consensus 611 ~~~L~~Lr~evde~~-q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~L 663 (674)
.|.+..||.-|.||= ++|-.+| ..-.=|+-|.-|+..++.+..+|.+++.+|
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEk-KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEW-KLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345566666666652 2222222 122224778889999999999999999876
No 49
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.03 E-value=2.6e+02 Score=24.40 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 005852 592 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERK 668 (674)
Q Consensus 592 ~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~---~~~~~~~~k~~LE~Ek~ 668 (674)
-|+.....|-+.+++++++...+-.-...--+++|...+. =...|..++.+++. +.|.+.++|--|+.|..
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~------lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD------KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777778888877655544322222233332221 12345556666654 45778899999999987
Q ss_pred Hhh
Q 005852 669 ALS 671 (674)
Q Consensus 669 AL~ 671 (674)
+-+
T Consensus 83 tYr 85 (95)
T 3mov_A 83 AYR 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.93 E-value=6.3e+02 Score=28.59 Aligned_cols=22 Identities=5% Similarity=0.323 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 005852 605 AAIESEMEILSKLRREVEEQLE 626 (674)
Q Consensus 605 aa~e~e~~~L~~Lr~evde~~q 626 (674)
..|+.|..-+.+|---||-|+.
T Consensus 138 snLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 51
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.31 E-value=2.2e+02 Score=25.93 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 005852 601 MKERAAIESEMEILSKLRREVEE 623 (674)
Q Consensus 601 lKeraa~e~e~~~L~~Lr~evde 623 (674)
+|.+|.+||+ .||.|++.
T Consensus 62 ~~q~a~~e~e-----~Lr~e~~~ 79 (120)
T 3i00_A 62 LRQQAADDCE-----FLRAELDE 79 (120)
T ss_dssp HHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHH
Confidence 3666667766 57777765
No 52
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=26.87 E-value=7.2e+02 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCcHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHhH
Q 005852 504 PDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVE----KEINESFEKELSMEREKI 572 (674)
Q Consensus 504 PkkPVTRAEAAaaL~sG~~~e~v~eEl~RlEAE~~a~~av~~~~~l~~~~e----kdi~~~~~~~l~~Er~~~ 572 (674)
|-+|+..+|-.. ..=|..||.|.--+.+-..|++-+.+.. ++|++|-..+.+.|.+..
T Consensus 84 ~pDPLsPgE~~~-----------~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~ 145 (526)
T 3iyk_A 84 IPDPLSPGERGI-----------QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDE 145 (526)
T ss_pred CCCCCCHhHHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 788988888654 3446666666666666666654442221 155566555555544333
No 53
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.18 E-value=2.2e+02 Score=26.19 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005852 583 RQELERLRAEREVDKI--ALMKERAAIESEMEILSKLRREVEEQLESLMS 630 (674)
Q Consensus 583 ~~ele~~r~~re~e~~--~llKeraa~e~e~~~L~~Lr~evde~~q~l~s 630 (674)
.+||+|+|-+.+.-.- +-.|-+--.||+++ +-.+|++-|.++|.+-+
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E-~ae~k~KYD~~lqe~es 86 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERK-MAEVQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4667777766554332 23344445567766 67788888888876643
No 54
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=24.29 E-value=3.5e+02 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 622 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 668 (674)
Q Consensus 622 de~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~Ek~ 668 (674)
+.|.+.|..-++.=.. +...+||++++....+++.+++..|..+.+
T Consensus 437 e~qa~~IL~m~L~rLT-~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~ 482 (514)
T 2inr_A 437 EEQAEAIVMLQLYRLT-NTDIVALEGEHKELEALIKQLRHILDNHDA 482 (514)
T ss_dssp HHHHHHHHTCCGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhchHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3455555555443222 335667777777777778888877776644
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.97 E-value=3e+02 Score=23.79 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHH
Q 005852 612 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 651 (674)
Q Consensus 612 ~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~ 651 (674)
++|.+|-..|...++.+..-+.+|-.-|+.-..|..+.+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666555554444433
No 56
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.94 E-value=1.5e+02 Score=28.28 Aligned_cols=31 Identities=35% Similarity=0.335 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 601 MKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 601 lKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
.+++..+...-+.....+.+|+..++.|...
T Consensus 65 e~~~~~l~rdleasr~akk~~ea~la~l~~~ 95 (146)
T 2xnx_M 65 EKELEAITREQEINRNLLGNAKLELDQLSSE 95 (146)
T ss_dssp TTTTTTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3344555555555555556666666655443
No 57
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.48 E-value=4.8e+02 Score=24.76 Aligned_cols=101 Identities=32% Similarity=0.432 Sum_probs=52.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHH--HHHHH------HHHHHHHHHhhh
Q 005852 564 ELSMEREKIDVVEKMAEEARQELERLRAEREV-----DKIALMKERAAIESEMEI--LSKLR------REVEEQLESLMS 630 (674)
Q Consensus 564 ~l~~Er~~~~~vek~~~~~~~ele~~r~~re~-----e~~~llKeraa~e~e~~~--L~~Lr------~evde~~q~l~s 630 (674)
-|.+||.+...+.|.--.-..||.++|++-.- +++.-+-.|...+.-.|- ..+|| .|-|.|.++|.
T Consensus 40 ML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT- 118 (167)
T 4gkw_A 40 MLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLT- 118 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH-
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHH-
Confidence 34557777777777776667777777775432 222222223333222121 12232 25567777764
Q ss_pred cceehhHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHhhhcC
Q 005852 631 NKVEISYEKERINMLRKEAENEN---QE----IARLQYELEVERKALSMAR 674 (674)
Q Consensus 631 ~~~~~~~Ek~~l~kL~~~~e~~~---~~----~~~~k~~LE~Ek~AL~m~R 674 (674)
+.|--|++++|.+. ++ ...|+-+-|.=++-|.|-|
T Consensus 119 ---------~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 119 ---------ETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 34555666666543 22 2345555555555566654
No 58
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.40 E-value=2.4e+02 Score=24.61 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 608 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 660 (674)
Q Consensus 608 e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k 660 (674)
..|++-|.+||..+.+.+.. -++.|++|++.++...+.|..++
T Consensus 36 qkekEqL~~LKkkl~~el~~----------h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISH----------HAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
No 59
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.71 E-value=4.8e+02 Score=24.46 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=7.9
Q ss_pred cccCCCCcCcHHHHHHHHHHH
Q 005852 427 IFFLPESPLSRQDLVSWKMAL 447 (674)
Q Consensus 427 ~~FkPDspITRQELAvwkVaL 447 (674)
-||.--.|..-+||+..+..|
T Consensus 14 ~~~~~~~p~~~~elik~L~~l 34 (152)
T 4fla_A 14 LYFQGAGPLLTEELIKALQDL 34 (152)
T ss_dssp ---------CHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHh
Confidence 356666677778988654444
No 60
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.45 E-value=1.1e+02 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 647 KEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 647 ~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
+++|.|-+++..-+|+||.|..-|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678888888888888888876654
No 61
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.28 E-value=7.3e+02 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceehh
Q 005852 606 AIESEMEILSKLRREVEEQLESLMSNKVEIS 636 (674)
Q Consensus 606 a~e~e~~~L~~Lr~evde~~q~l~s~~~~~~ 636 (674)
.++.-++.+...+.+-...++.+-.-+-.|.
T Consensus 193 k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~ 223 (486)
T 3haj_A 193 KIEKCKQDVLKTKEKYEKSLKELDQGTPQYM 223 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555556666655554433
No 62
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.83 E-value=1.1e+02 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005852 647 KEAENENQEIARLQYELEVERKALS 671 (674)
Q Consensus 647 ~~~e~~~~~~~~~k~~LE~Ek~AL~ 671 (674)
+++|.|-+++..-+++||.|..-|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678888888888888888876554
No 63
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.26 E-value=2.2e+02 Score=25.30 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005852 613 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 665 (674)
Q Consensus 613 ~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~~e~~~~~~~~~k~~LE~ 665 (674)
.+.+|...||+-.+.|-.+=-....|-.+|+.+++.+..=.-....+.++|+-
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46788888888888887777777777778888777776666666666677663
No 64
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.91 E-value=1.9e+02 Score=28.08 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005852 573 DVVEKMAEEARQELER 588 (674)
Q Consensus 573 ~~vek~~~~~~~ele~ 588 (674)
+-+++ +++..++|..
T Consensus 12 ~~l~~-Lq~~i~~l~~ 26 (174)
T 2p22_A 12 EMLQN-LQTVVNELYR 26 (174)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 33444 4444444443
No 65
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=20.23 E-value=5.2e+02 Score=23.92 Aligned_cols=52 Identities=31% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehhHHHHHHHHHHHH
Q 005852 593 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 648 (674)
Q Consensus 593 re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~~Ek~~l~kL~~~ 648 (674)
|..-.+.+-..+.-+..+.+++..+..++.+.|..+... -+| +.-|.+|..+
T Consensus 58 r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~-~~Y---~~~L~~Li~e 109 (187)
T 3v6i_A 58 RAESAGELLVATARTQARGEVLEEVRRRVREALEALPQK-PEW---PEVVRKLALE 109 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-TTH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-ccH---HHHHHHHHHH
Confidence 334444555556667777888888888888888887765 112 4455555544
Done!