Query 005852
Match_columns 674
No_of_seqs 154 out of 249
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 09:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005852.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005852hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f5na1 a.114.1.1 (A:284-583) 28.2 1.8E+02 0.013 25.3 12.1 10 350-359 5-14 (300)
2 d1gqea_ e.38.1.1 (A:) Polypept 24.8 2.4E+02 0.017 27.3 11.4 31 596-626 49-79 (362)
3 d2d4ca1 a.238.1.1 (A:11-247) E 22.3 2.1E+02 0.016 24.1 14.8 59 572-636 148-206 (237)
4 d1yf2a2 d.287.1.2 (A:221-425) 15.9 1.3E+02 0.0096 24.1 6.2 25 611-635 179-203 (205)
5 d2d4ca1 a.238.1.1 (A:11-247) E 13.7 3.4E+02 0.025 22.7 14.9 79 554-633 138-217 (237)
6 d1f5na1 a.114.1.1 (A:284-583) 12.3 4.1E+02 0.03 22.8 13.7 10 643-652 246-255 (300)
7 d1qvra2 c.37.1.20 (A:149-535) 11.0 5.7E+02 0.041 24.4 10.3 13 352-364 96-108 (387)
8 d1ge9a_ d.67.3.1 (A:) Ribosome 9.0 5.3E+02 0.039 22.3 8.4 19 574-592 118-136 (184)
9 d1seta1 a.2.7.1 (A:1-110) Sery 7.6 4.7E+02 0.034 20.3 9.6 62 570-631 28-100 (110)
10 d1k4ta1 a.2.8.1 (A:641-712) Eu 7.5 4.4E+02 0.032 20.5 6.2 58 562-621 1-58 (72)
No 1
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.17 E-value=1.8e+02 Score=25.29 Aligned_cols=10 Identities=0% Similarity=-0.110 Sum_probs=3.8
Q ss_pred ccHHHHHHHH
Q 005852 350 CIRREYARWL 359 (674)
Q Consensus 350 ITRaEFArwL 359 (674)
||=..|+.++
T Consensus 5 ~~g~~l~~l~ 14 (300)
T d1f5na1 5 VNGPRLESLV 14 (300)
T ss_dssp CBHHHHHHHH
T ss_pred eeHHHHHHHH
Confidence 3333333333
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=24.81 E-value=2.4e+02 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005852 596 DKIALMKERAAIESEMEILSKLRREVEEQLE 626 (674)
Q Consensus 596 e~~~llKeraa~e~e~~~L~~Lr~evde~~q 626 (674)
....++||++.++..-+.+..|+..+++.-+
T Consensus 49 kAqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 49 RAQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999988877644
No 3
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27 E-value=2.1e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcceehh
Q 005852 572 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 636 (674)
Q Consensus 572 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~~~~~ 636 (674)
.....|.++.++..+++.|....+.. +..++.-+..+-.++.++...+..|...+++++
T Consensus 148 ~~~~rk~~d~~~~~~~~~~~k~~~~~------~e~l~~a~~~~e~~~~~~~~~l~~l~~~~~~~~ 206 (237)
T d2d4ca1 148 LQHHLKKLEGRRLDFDYKKKRQGKIP------DEELRQALEKFDESKEIAESSMFNLLEMDIEQV 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34456677788888877766443321 223444566677777777777777766656554
No 4
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=15.92 E-value=1.3e+02 Score=24.06 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeh
Q 005852 611 MEILSKLRREVEEQLESLMSNKVEI 635 (674)
Q Consensus 611 ~~~L~~Lr~evde~~q~l~s~~~~~ 635 (674)
.+.+..|++--+.+||+|.++++.|
T Consensus 179 ~~~~~~l~~~k~~Ll~~l~tGel~v 203 (205)
T d1yf2a2 179 KQKKEKLQRMKKKIMELLLTGKVRV 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCceee
Confidence 3334445555568899999998865
No 5
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.71 E-value=3.4e+02 Score=22.67 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005852 554 EKEINESFEKELSMEREKIDVVEKMAEEARQELERL-RAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNK 632 (674)
Q Consensus 554 ekdi~~~~~~~l~~Er~~~~~vek~~~~~~~ele~~-r~~re~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~~ 632 (674)
..||+..|. ..+..|.+.+..-..+..++....+. +.+-++....+-.-+..+.++|..|...+-++=..|..++.--
T Consensus 138 ~~d~~~~~~-~~~~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~~~~~~~~~~l~~~~~aq 216 (237)
T d2d4ca1 138 DKDLREIQS-ALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQ 216 (237)
T ss_dssp HTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 446665553 23334444444444444444322211 1111222334444555666777777665555545555554433
Q ss_pred e
Q 005852 633 V 633 (674)
Q Consensus 633 ~ 633 (674)
.
T Consensus 217 ~ 217 (237)
T d2d4ca1 217 L 217 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.33 E-value=4.1e+02 Score=22.82 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 005852 643 NMLRKEAENE 652 (674)
Q Consensus 643 ~kL~~~~e~~ 652 (674)
.+|...++.+
T Consensus 246 ~~l~~~~e~e 255 (300)
T d1f5na1 246 KQLTEKMEND 255 (300)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3343344333
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=11.04 E-value=5.7e+02 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhc
Q 005852 352 RREYARWLVSASS 364 (674)
Q Consensus 352 RaEFArwLVRAls 364 (674)
||+|-..|...+.
T Consensus 96 ~g~~e~r~~~i~~ 108 (387)
T d1qvra2 96 RGEFEERLKAVIQ 108 (387)
T ss_dssp --CHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 6777777655543
No 8
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=9.03 E-value=5.3e+02 Score=22.29 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005852 574 VVEKMAEEARQELERLRAE 592 (674)
Q Consensus 574 ~vek~~~~~~~ele~~r~~ 592 (674)
.+-+.+|+++.-+-+.|.+
T Consensus 118 ~ak~~~E~aKv~iRniR~~ 136 (184)
T d1ge9a_ 118 LLHKITEEARVRVRNVRRE 136 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 4456666666655555544
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=7.63 E-value=4.7e+02 Score=20.28 Aligned_cols=62 Identities=27% Similarity=0.414 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005852 570 EKIDVVEKMAEEARQELERLRAER-----------EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 631 (674)
Q Consensus 570 ~~~~~vek~~~~~~~ele~~r~~r-----------e~e~~~llKeraa~e~e~~~L~~Lr~evde~~q~l~s~ 631 (674)
.+..++.+-.-++..+++.+|++| -++..+++++=..+-.+...|..-..++++.++.++..
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~ 100 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 10
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.51 E-value=4.4e+02 Score=20.45 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005852 562 EKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREV 621 (674)
Q Consensus 562 ~~~l~~Er~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~Lr~ev 621 (674)
++-|..=+++|.+-.+.+.+|..||-..+.+--.-. =-|.+.++|+-+..|-+|++.+
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~--~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMK--DAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Done!