Query 005853
Match_columns 673
No_of_seqs 374 out of 1842
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 14:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.6E-90 5.6E-95 697.8 21.2 229 286-515 1-229 (229)
2 PF01852 START: START domain; 99.7 1.4E-17 3E-22 164.8 12.4 204 291-515 1-205 (206)
3 KOG0842 Transcription factor t 99.7 1.7E-17 3.8E-22 174.1 11.1 69 90-158 149-217 (307)
4 smart00234 START in StAR and p 99.7 2.9E-16 6.4E-21 155.8 16.9 203 292-515 2-205 (206)
5 KOG0483 Transcription factor H 99.7 3.7E-17 7.9E-22 163.0 5.2 79 98-176 54-132 (198)
6 KOG0488 Transcription factor B 99.7 1.5E-16 3.3E-21 168.9 9.3 66 90-155 168-233 (309)
7 KOG0485 Transcription factor N 99.6 3.6E-16 7.7E-21 154.8 9.4 65 91-155 101-165 (268)
8 KOG0487 Transcription factor A 99.6 3.1E-16 6.7E-21 164.8 8.9 65 91-155 232-296 (308)
9 KOG0484 Transcription factor P 99.6 1.2E-16 2.6E-21 141.8 2.0 66 90-155 13-78 (125)
10 KOG0489 Transcription factor z 99.6 1.2E-16 2.6E-21 166.4 2.2 64 92-155 157-220 (261)
11 KOG0494 Transcription factor C 99.6 2.4E-15 5.2E-20 152.1 8.7 74 94-167 140-214 (332)
12 KOG0843 Transcription factor E 99.6 8.1E-16 1.8E-20 148.8 4.2 64 93-156 101-164 (197)
13 KOG0850 Transcription factor D 99.6 2.8E-15 6E-20 150.1 7.2 68 87-154 115-182 (245)
14 KOG0848 Transcription factor C 99.6 4.7E-15 1E-19 150.8 7.2 66 91-156 196-261 (317)
15 KOG2251 Homeobox transcription 99.5 4.6E-15 9.9E-20 148.0 4.9 67 90-156 33-99 (228)
16 KOG0492 Transcription factor M 99.5 9E-15 1.9E-19 144.1 6.0 64 92-155 142-205 (246)
17 PF00046 Homeobox: Homeobox do 99.5 1E-14 2.2E-19 117.1 3.0 57 95-151 1-57 (57)
18 KOG0493 Transcription factor E 99.5 1.1E-13 2.3E-18 140.4 8.3 59 95-153 247-305 (342)
19 TIGR01565 homeo_ZF_HD homeobox 99.4 2.4E-13 5.1E-18 110.7 5.5 53 94-146 1-57 (58)
20 KOG0486 Transcription factor P 99.4 4.1E-13 9E-18 139.5 5.3 62 92-153 110-171 (351)
21 KOG0844 Transcription factor E 99.3 5.4E-13 1.2E-17 137.7 4.4 63 93-155 180-242 (408)
22 smart00389 HOX Homeodomain. DN 99.3 6E-13 1.3E-17 106.0 3.0 56 95-150 1-56 (56)
23 cd00086 homeodomain Homeodomai 99.3 8.7E-13 1.9E-17 105.8 3.3 56 96-151 2-57 (59)
24 KOG4577 Transcription factor L 99.3 1.8E-12 4E-17 133.0 5.7 74 93-166 166-239 (383)
25 cd00177 START Lipid-binding ST 99.3 5.2E-11 1.1E-15 115.3 14.5 189 295-512 2-190 (193)
26 KOG0491 Transcription factor B 99.3 3.4E-13 7.4E-18 128.9 -1.0 66 92-157 98-163 (194)
27 COG5576 Homeodomain-containing 99.3 3.5E-12 7.6E-17 123.4 4.6 66 93-158 50-115 (156)
28 KOG3802 Transcription factor O 99.2 8.7E-12 1.9E-16 134.0 5.6 63 91-153 291-353 (398)
29 KOG0847 Transcription factor, 99.1 8.1E-12 1.8E-16 124.2 0.8 65 91-155 164-228 (288)
30 cd08871 START_STARD10-like Lip 99.1 1.8E-09 4E-14 109.6 16.4 201 294-527 9-213 (222)
31 cd08867 START_STARD4_5_6-like 99.1 3.3E-09 7.2E-14 106.5 15.9 195 289-514 3-205 (206)
32 cd08868 START_STARD1_3_like Ch 99.0 5.6E-09 1.2E-13 105.0 15.7 196 289-517 6-208 (208)
33 KOG0490 Transcription factor, 99.0 1.5E-10 3.3E-15 116.9 4.1 64 91-154 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.9 2.3E-08 5E-13 101.1 13.6 173 289-485 3-178 (204)
35 KOG0849 Transcription factor P 98.9 1E-09 2.2E-14 119.2 3.8 65 90-154 172-236 (354)
36 cd08903 START_STARD5-like Lipi 98.8 1.4E-07 3E-12 95.5 14.6 193 289-514 3-205 (208)
37 cd08909 START_STARD13-like C-t 98.7 2.5E-07 5.4E-12 93.7 14.1 129 341-485 48-178 (205)
38 cd08869 START_RhoGAP C-termina 98.7 2.4E-07 5.2E-12 92.9 12.9 163 294-483 4-168 (197)
39 KOG1168 Transcription factor A 98.6 2E-08 4.3E-13 103.8 4.5 62 91-152 306-367 (385)
40 PLN00188 enhanced disease resi 98.6 2.6E-07 5.5E-12 106.7 13.6 133 345-487 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.5 1.3E-06 2.8E-11 88.5 12.1 192 289-515 6-207 (209)
42 cd08906 START_STARD3-like Chol 98.4 5E-06 1.1E-10 84.4 14.8 194 289-514 6-206 (209)
43 cd08902 START_STARD4-like Lipi 98.3 1E-05 2.2E-10 81.6 13.8 192 289-512 3-199 (202)
44 KOG0775 Transcription factor S 98.2 6.6E-07 1.4E-11 92.5 3.7 51 101-151 183-233 (304)
45 cd08908 START_STARD12-like C-t 98.2 2.5E-05 5.5E-10 79.2 13.3 162 293-483 11-175 (204)
46 cd08877 START_2 Uncharacterize 98.1 3.9E-05 8.4E-10 77.7 13.4 200 289-515 3-213 (215)
47 cd08910 START_STARD2-like Lipi 98.0 6.3E-05 1.4E-09 76.2 12.7 151 345-516 49-206 (207)
48 cd08876 START_1 Uncharacterize 97.9 0.00011 2.4E-09 72.6 12.6 152 346-514 42-194 (195)
49 cd08874 START_STARD9-like C-te 97.9 9E-05 1.9E-09 75.3 11.6 123 350-488 50-181 (205)
50 cd08907 START_STARD8-like C-te 97.8 8E-05 1.7E-09 75.3 9.7 165 293-485 11-178 (205)
51 KOG0774 Transcription factor P 97.8 1.1E-05 2.3E-10 83.0 3.0 58 95-152 189-249 (334)
52 KOG0490 Transcription factor, 97.7 2.5E-05 5.4E-10 79.0 4.1 65 90-154 149-213 (235)
53 PF05920 Homeobox_KN: Homeobox 97.7 8E-06 1.7E-10 62.0 -0.2 34 115-148 7-40 (40)
54 cd08870 START_STARD2_7-like Li 97.6 0.0012 2.5E-08 66.9 14.4 193 297-516 8-208 (209)
55 cd08872 START_STARD11-like Cer 97.6 0.002 4.3E-08 66.8 15.4 195 294-515 9-225 (235)
56 cd08911 START_STARD7-like Lipi 97.5 0.0012 2.6E-08 66.8 12.7 152 346-516 46-206 (207)
57 KOG2252 CCAAT displacement pro 97.5 7.6E-05 1.6E-09 84.0 3.5 59 91-149 417-475 (558)
58 cd08873 START_STARD14_15-like 97.4 0.0011 2.3E-08 68.8 11.5 123 341-481 78-203 (235)
59 KOG1146 Homeobox protein [Gene 96.9 0.00057 1.2E-08 83.3 3.3 63 92-154 901-963 (1406)
60 cd08913 START_STARD14-like Lip 96.9 0.011 2.4E-07 61.7 12.2 127 348-489 84-214 (240)
61 cd08914 START_STARD15-like Lip 96.8 0.0082 1.8E-07 62.4 10.5 129 346-490 79-211 (236)
62 KOG0773 Transcription factor M 95.0 0.035 7.7E-07 60.3 5.6 62 93-154 238-302 (342)
63 PF11569 Homez: Homeodomain le 94.2 0.011 2.3E-07 48.3 -0.6 41 106-146 10-50 (56)
64 cd08876 START_1 Uncharacterize 90.8 0.5 1.1E-05 46.6 6.1 62 559-629 14-75 (195)
65 cd08871 START_STARD10-like Lip 90.5 0.58 1.3E-05 47.7 6.4 60 560-628 21-81 (222)
66 cd08873 START_STARD14_15-like 90.3 0.58 1.2E-05 48.9 6.1 56 560-626 53-108 (235)
67 PRK09413 IS2 repressor TnpA; R 89.9 0.84 1.8E-05 42.5 6.3 41 99-144 11-52 (121)
68 cd08904 START_STARD6-like Lipi 89.7 0.86 1.9E-05 46.5 6.8 60 561-629 21-80 (204)
69 cd08874 START_STARD9-like C-te 89.2 0.82 1.8E-05 46.7 6.2 61 559-629 19-79 (205)
70 cd08914 START_STARD15-like Lip 88.6 0.89 1.9E-05 47.5 6.0 59 559-628 53-111 (236)
71 cd08910 START_STARD2-like Lipi 86.9 1.3 2.8E-05 45.0 6.0 60 559-627 22-82 (207)
72 KOG2761 START domain-containin 86.9 3.7 8.1E-05 42.4 9.2 112 354-479 63-183 (219)
73 cd08907 START_STARD8-like C-te 86.6 1.3 2.8E-05 45.3 5.7 56 559-625 24-80 (205)
74 cd08860 TcmN_ARO-CYC_like N-te 86.4 5.2 0.00011 38.4 9.5 140 349-516 5-144 (146)
75 cd08870 START_STARD2_7-like Li 86.2 1.2 2.6E-05 45.1 5.3 59 562-629 22-85 (209)
76 cd08864 SRPBCC_DUF3074 DUF3074 85.9 4.8 0.0001 41.2 9.5 89 399-489 90-184 (208)
77 cd08903 START_STARD5-like Lipi 85.6 1.4 3E-05 44.8 5.4 61 560-629 20-82 (208)
78 cd08913 START_STARD14-like Lip 85.0 1.7 3.6E-05 45.6 5.8 58 559-627 56-113 (240)
79 cd08877 START_2 Uncharacterize 84.7 1.9 4.1E-05 43.7 5.9 70 548-628 10-79 (215)
80 KOG3623 Homeobox transcription 84.6 0.49 1.1E-05 55.6 1.7 51 101-152 564-614 (1007)
81 KOG4005 Transcription factor X 84.2 5.7 0.00012 41.4 8.9 38 143-180 82-121 (292)
82 cd08911 START_STARD7-like Lipi 84.0 1.7 3.6E-05 44.1 5.1 61 560-629 19-80 (207)
83 PF04218 CENP-B_N: CENP-B N-te 83.6 0.84 1.8E-05 36.7 2.2 46 95-145 1-46 (53)
84 cd08902 START_STARD4-like Lipi 83.5 2.2 4.7E-05 43.7 5.7 61 560-629 21-81 (202)
85 cd08867 START_STARD4_5_6-like 82.7 5.1 0.00011 40.3 8.0 74 541-629 7-82 (206)
86 cd00177 START Lipid-binding ST 82.1 2.9 6.3E-05 40.2 5.8 58 562-628 15-72 (193)
87 cd08866 SRPBCC_11 Ligand-bindi 81.9 20 0.00043 33.0 11.1 132 349-515 3-143 (144)
88 cd05018 CoxG Carbon monoxide d 81.6 14 0.0003 33.6 9.9 108 350-483 6-113 (144)
89 cd08869 START_RhoGAP C-termina 79.6 7.2 0.00016 39.2 7.8 58 560-627 17-74 (197)
90 cd07813 COQ10p_like Coenzyme Q 78.9 13 0.00028 34.3 8.8 135 349-516 3-137 (138)
91 cd08861 OtcD1_ARO-CYC_like N-t 78.9 15 0.00033 33.7 9.3 27 350-376 4-30 (142)
92 cd08868 START_STARD1_3_like Ch 78.9 6.2 0.00013 39.8 7.1 60 561-629 23-83 (208)
93 KOG4196 bZIP transcription fac 78.5 4.6 9.9E-05 38.5 5.5 87 99-220 22-109 (135)
94 cd08872 START_STARD11-like Cer 77.6 7.7 0.00017 40.4 7.6 66 556-629 20-87 (235)
95 cd07817 SRPBCC_8 Ligand-bindin 75.4 45 0.00098 30.1 11.3 134 350-515 5-138 (139)
96 cd07819 SRPBCC_2 Ligand-bindin 74.1 29 0.00062 31.4 9.6 107 349-484 6-114 (140)
97 PF06005 DUF904: Protein of un 72.6 7.5 0.00016 33.5 4.9 48 152-221 14-61 (72)
98 PF02183 HALZ: Homeobox associ 71.5 6.8 0.00015 30.7 4.0 24 153-176 2-25 (45)
99 TIGR00219 mreC rod shape-deter 68.3 5.9 0.00013 42.4 4.2 40 159-216 69-108 (283)
100 cd08906 START_STARD3-like Chol 67.6 18 0.00038 36.9 7.3 57 561-626 24-81 (209)
101 PRK10724 hypothetical protein; 66.8 72 0.0016 31.2 11.0 137 348-517 18-154 (158)
102 cd07821 PYR_PYL_RCAR_like Pyra 65.3 59 0.0013 29.1 9.6 133 351-514 7-139 (140)
103 cd08908 START_STARD12-like C-t 64.3 12 0.00027 38.2 5.4 54 563-626 28-81 (204)
104 cd08865 SRPBCC_10 Ligand-bindi 63.8 89 0.0019 27.8 10.5 37 350-391 4-40 (140)
105 cd07818 SRPBCC_1 Ligand-bindin 61.6 49 0.0011 30.6 8.6 29 349-377 6-34 (150)
106 PRK13922 rod shape-determining 60.8 11 0.00024 39.8 4.5 41 157-216 70-110 (276)
107 PF01527 HTH_Tnp_1: Transposas 59.1 1.1 2.3E-05 37.6 -2.8 42 96-142 2-44 (76)
108 PRK15422 septal ring assembly 56.0 23 0.00051 31.1 4.8 60 150-224 12-75 (79)
109 KOG0971 Microtubule-associated 53.3 32 0.00069 42.2 6.9 55 161-222 337-391 (1243)
110 KOG2761 START domain-containin 53.2 20 0.00044 37.2 4.7 59 558-626 25-85 (219)
111 PF12711 Kinesin-relat_1: Kine 51.9 25 0.00055 31.4 4.5 47 160-222 21-67 (86)
112 KOG0709 CREB/ATF family transc 51.9 92 0.002 35.8 9.9 97 99-224 219-318 (472)
113 KOG1146 Homeobox protein [Gene 51.6 19 0.00041 45.7 4.9 62 93-154 443-504 (1406)
114 KOG4343 bZIP transcription fac 48.2 34 0.00074 39.7 5.8 26 304-330 438-463 (655)
115 PF10604 Polyketide_cyc2: Poly 45.0 33 0.00072 30.7 4.4 34 350-387 7-40 (139)
116 cd08905 START_STARD1-like Chol 44.7 94 0.002 31.6 8.1 78 541-629 6-84 (209)
117 PF04880 NUDE_C: NUDE protein, 43.4 22 0.00047 35.5 3.1 19 200-218 25-43 (166)
118 smart00234 START in StAR and p 42.5 53 0.0011 32.5 5.8 62 561-629 18-80 (206)
119 cd07823 SRPBCC_5 Ligand-bindin 42.2 13 0.00027 34.9 1.2 26 599-624 3-28 (146)
120 TIGR03752 conj_TIGR03752 integ 41.5 29 0.00063 39.8 4.1 28 152-179 76-103 (472)
121 PF04967 HTH_10: HTH DNA bindi 41.5 28 0.00061 28.2 2.9 37 101-137 1-39 (53)
122 PF07407 Seadorna_VP6: Seadorn 41.2 30 0.00066 37.8 3.9 20 157-176 33-52 (420)
123 cd07819 SRPBCC_2 Ligand-bindin 40.7 22 0.00047 32.2 2.5 31 596-626 3-33 (140)
124 cd08865 SRPBCC_10 Ligand-bindi 40.6 19 0.00041 32.3 2.0 28 598-625 2-29 (140)
125 cd08909 START_STARD13-like C-t 39.7 57 0.0012 33.5 5.6 54 562-625 27-80 (205)
126 cd07824 SRPBCC_6 Ligand-bindin 39.2 2.7E+02 0.0059 25.9 9.8 118 352-496 8-128 (146)
127 smart00340 HALZ homeobox assoc 39.1 23 0.0005 27.6 1.9 19 203-221 16-34 (44)
128 PF10604 Polyketide_cyc2: Poly 38.4 32 0.00069 30.9 3.2 29 597-625 4-32 (139)
129 cd07812 SRPBCC START/RHO_alpha 37.5 1.6E+02 0.0034 25.2 7.4 29 350-378 4-32 (141)
130 PF02183 HALZ: Homeobox associ 37.0 68 0.0015 25.2 4.3 38 161-220 3-40 (45)
131 COG1792 MreC Cell shape-determ 36.8 63 0.0014 34.7 5.6 43 155-216 65-107 (284)
132 smart00338 BRLZ basic region l 36.5 1.1E+02 0.0024 25.1 5.9 40 154-215 24-63 (65)
133 PRK14872 rod shape-determining 36.4 36 0.00077 37.6 3.7 42 156-216 57-98 (337)
134 cd07822 SRPBCC_4 Ligand-bindin 36.4 44 0.00096 29.9 3.8 51 462-515 91-141 (141)
135 cd07817 SRPBCC_8 Ligand-bindin 34.9 29 0.00063 31.4 2.4 28 598-625 3-30 (139)
136 COG3074 Uncharacterized protei 34.8 81 0.0017 27.2 4.7 56 154-224 16-75 (79)
137 cd07814 SRPBCC_CalC_Aha1-like 34.7 2.9E+02 0.0062 24.7 8.9 47 463-515 92-138 (139)
138 cd07821 PYR_PYL_RCAR_like Pyra 34.5 31 0.00068 30.9 2.5 28 598-625 4-31 (140)
139 COG4026 Uncharacterized protei 34.5 81 0.0017 33.0 5.5 49 148-218 141-189 (290)
140 cd08866 SRPBCC_11 Ligand-bindi 34.2 27 0.00058 32.1 2.0 29 598-626 2-30 (144)
141 cd08862 SRPBCC_Smu440-like Lig 33.9 31 0.00068 31.1 2.4 30 596-625 2-31 (138)
142 PRK03975 tfx putative transcri 33.8 38 0.00083 32.8 3.0 47 99-151 5-51 (141)
143 PF00170 bZIP_1: bZIP transcri 33.5 1.6E+02 0.0034 24.2 6.3 24 154-177 24-47 (64)
144 cd08901 SRPBCC_CalC_Aha1-like_ 33.4 27 0.00058 32.5 1.9 27 597-623 2-28 (136)
145 PF04545 Sigma70_r4: Sigma-70, 33.3 23 0.0005 27.4 1.2 38 100-142 4-41 (50)
146 cd05018 CoxG Carbon monoxide d 33.1 23 0.00051 32.1 1.4 27 599-625 5-31 (144)
147 cd06171 Sigma70_r4 Sigma70, re 32.6 14 0.00031 27.4 -0.1 42 100-146 10-51 (55)
148 cd07825 SRPBCC_7 Ligand-bindin 31.8 34 0.00074 31.4 2.3 26 599-624 4-29 (144)
149 KOG4403 Cell surface glycoprot 31.3 1E+02 0.0022 35.2 6.0 22 293-314 402-423 (575)
150 cd07814 SRPBCC_CalC_Aha1-like 30.8 30 0.00064 31.2 1.7 28 598-625 3-30 (139)
151 cd07818 SRPBCC_1 Ligand-bindin 30.2 40 0.00088 31.2 2.5 31 597-627 4-34 (150)
152 cd07812 SRPBCC START/RHO_alpha 29.3 39 0.00084 29.1 2.1 27 599-625 3-29 (141)
153 PF14389 Lzipper-MIP1: Leucine 27.8 3.3E+02 0.0072 24.2 7.7 71 146-220 5-75 (88)
154 PRK00118 putative DNA-binding 25.8 1.2E+02 0.0027 27.9 4.7 47 101-152 18-64 (104)
155 COG3413 Predicted DNA binding 25.8 58 0.0013 33.1 3.0 37 100-136 155-193 (215)
156 cd07822 SRPBCC_4 Ligand-bindin 25.7 55 0.0012 29.3 2.5 27 599-625 4-30 (141)
157 KOG4571 Activating transcripti 25.4 1.3E+02 0.0029 32.6 5.5 29 151-179 243-271 (294)
158 TIGR00219 mreC rod shape-deter 25.3 1.9E+02 0.0041 31.1 6.8 46 159-223 62-108 (283)
159 TIGR03752 conj_TIGR03752 integ 25.0 1.4E+02 0.003 34.6 5.9 28 153-180 70-97 (472)
160 cd00569 HTH_Hin_like Helix-tur 24.9 63 0.0014 21.2 2.2 37 100-141 5-41 (42)
161 cd01106 HTH_TipAL-Mta Helix-Tu 24.8 1.8E+02 0.004 26.0 5.7 65 97-175 35-99 (103)
162 PRK06266 transcription initiat 24.6 53 0.0011 33.0 2.3 35 181-216 136-170 (178)
163 cd07820 SRPBCC_3 Ligand-bindin 24.4 51 0.0011 30.5 2.1 26 599-624 3-28 (137)
164 PF05494 Tol_Tol_Ttg2: Toluene 24.3 1.7E+02 0.0037 28.5 5.8 55 383-443 86-140 (170)
165 PRK10884 SH3 domain-containing 23.5 6.1E+02 0.013 26.1 9.8 19 161-179 130-148 (206)
166 PF09726 Macoilin: Transmembra 23.4 3.5E+02 0.0076 32.9 9.2 7 410-416 668-674 (697)
167 PRK00888 ftsB cell division pr 22.7 1.2E+02 0.0025 28.0 4.0 41 138-179 17-57 (105)
168 PF14197 Cep57_CLD_2: Centroso 22.6 1.6E+02 0.0034 25.2 4.5 20 199-218 47-66 (69)
169 KOG0288 WD40 repeat protein Ti 22.2 1.5E+02 0.0032 33.8 5.3 118 338-478 228-348 (459)
170 cd08898 SRPBCC_CalC_Aha1-like_ 21.8 67 0.0015 29.3 2.3 28 598-625 4-31 (145)
171 KOG3119 Basic region leucine z 21.5 1.1E+02 0.0024 32.6 4.2 67 144-225 189-255 (269)
172 PF12824 MRP-L20: Mitochondria 21.1 1.8E+02 0.0039 29.0 5.2 46 99-146 84-129 (164)
173 cd07824 SRPBCC_6 Ligand-bindin 21.0 67 0.0014 30.0 2.1 27 599-625 5-31 (146)
174 PF15058 Speriolin_N: Sperioli 20.6 1.2E+02 0.0025 31.1 3.8 38 159-219 8-45 (200)
175 PF07151 DUF1391: Protein of u 20.4 47 0.001 26.0 0.8 8 501-508 38-45 (49)
176 KOG3156 Uncharacterized membra 20.1 2.5E+02 0.0053 29.3 6.0 47 155-222 93-139 (220)
177 PF01852 START: START domain; 20.1 2.6E+02 0.0057 27.3 6.3 76 544-628 2-77 (206)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.6e-90 Score=697.80 Aligned_cols=229 Identities=53% Similarity=0.902 Sum_probs=221.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhc
Q 005853 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMM 365 (673)
Q Consensus 286 ~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lm 365 (673)
|++|++||++||+||++||++++|||+++.++++|+||+|||.+.||+..|.++.||++|||||||+|.||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 57899999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCC
Q 005853 366 DANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNRE 445 (673)
Q Consensus 366 D~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~ 445 (673)
|+++|.++||+||++|+|++|| ++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vi-stg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVI-STGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEe-eCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 446 GLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 446 ~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
.+...+++||+|+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4444578999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=1.4e-17 Score=164.82 Aligned_cols=204 Identities=20% Similarity=0.310 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh-h
Q 005853 291 DLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN-R 369 (673)
Q Consensus 291 ~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~~-~ 369 (673)
|+|.++|.+++++++.++.-|....+. -+.+.|.+..+... +..+..-|..++|...+.++++.|+|.. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~ 71 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDK----KNGDVYYKKVSPSD-----SCPIKMFKAEGVVPASPEQVVEDLLDDREQ 71 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEE----TTTCEEEEEEECSS-----STSCEEEEEEEEESSCHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEcc----CCCeEEEEEeCccc-----cccceEEEEEEEEcCChHHHHHHHHhhHhh
Confidence 589999999999999999999886511 12223333332221 1466788999999999999999999988 8
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCCCC
Q 005853 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSA 449 (673)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~ 449 (673)
|-.++ ..+..++.+ +. +..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.....+..
T Consensus 72 Wd~~~----~~~~~le~~-~~------~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~ 139 (206)
T PF01852_consen 72 WDKMC----VEAEVLEQI-DE------DTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNS 139 (206)
T ss_dssp HSTTE----EEEEEEEEE-ET------TEEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-
T ss_pred cccch----hhheeeeec-CC------CCeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccccc
Confidence 88873 367777777 32 3678888899999999999 999999999999999999999999866443313
Q ss_pred CccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
..++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 140 ~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 140 KGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999999999999999999899999999999999989999999988765
No 3
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.72 E-value=1.7e-17 Score=174.09 Aligned_cols=69 Identities=29% Similarity=0.421 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHh
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHEN 158 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~ 158 (673)
..++|||+|..||..|+.+||+.|+.++|++..+|++||+.|+|+++||||||||||.|.||+++++..
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhh
Confidence 356788888999999999999999999999999999999999999999999999999999998776443
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.70 E-value=2.9e-16 Score=155.76 Aligned_cols=203 Identities=34% Similarity=0.543 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHhcChhhH
Q 005853 292 LALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETMMDANRW 370 (673)
Q Consensus 292 lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LV-e~lmD~~~W 370 (673)
-|+.++.|+++++...+..|....++ -|...|.+.+. +.+....+-|+.++|...+.+++ ++|+|. .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~~~~~~------~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~-~~ 70 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSEN----ENGDEVRSILS------PGRSPGEASRAVGVVPMVCADLVEELMDDL-RY 70 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEcccc----CCcceEEEEcc------CCCCceEEEEEEEEEecChHHHHHHHHhcc-cc
Confidence 36788999999999999999987642 11112222211 11345789999999999999844 566665 33
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCCCCC
Q 005853 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSAD 450 (673)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~ 450 (673)
...+-..+..+++++.+ +. +..+......+.. +| +..|||.++|++++.++|.|+|+..|++.... +...
T Consensus 71 r~~Wd~~~~~~~~ie~~-~~------~~~i~~~~~~~~~-~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~~~ 140 (206)
T smart00234 71 RPEWDKNVAKAETLEVI-DN------GTVIYHYVSKFVA-GP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PPTS 140 (206)
T ss_pred hhhCchhcccEEEEEEE-CC------CCeEEEEEEeccc-Cc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CCCC
Confidence 33344445668888888 42 2334434444444 45 45599999999999999999999999986432 2223
Q ss_pred ccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 451 PFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 451 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|+
T Consensus 141 ~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 141 GYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred CceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999998888999999999999999999999999996
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.67 E-value=3.7e-17 Score=162.95 Aligned_cols=79 Identities=32% Similarity=0.557 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 005853 98 YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLK 176 (673)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ 176 (673)
+.|||.+|+..||+.|+...|+...+|..||++|||.+|||+|||||||||||.++.+.++..++.+++.++.+|..++
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999988866555
No 6
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.66 E-value=1.5e-16 Score=168.93 Aligned_cols=66 Identities=38% Similarity=0.514 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.++|+||.||.||..|+.+||+.|++.+|++..+|.+||++|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999999999999999999997665
No 7
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.65 E-value=3.6e-16 Score=154.76 Aligned_cols=65 Identities=32% Similarity=0.434 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
+.+|||.||.|+..|+..||..|+..+|++..+|..||++|.|+|.||||||||||.||||+...
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45788899999999999999999999999999999999999999999999999999999987543
No 8
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.64 E-value=3.1e-16 Score=164.78 Aligned_cols=65 Identities=38% Similarity=0.446 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.+..||||..+|+.|+.+||+.|-.|.|.+.+.|.||++.|+|++|||||||||||+|.||..++
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 35668888999999999999999999999999999999999999999999999999999987754
No 9
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.61 E-value=1.2e-16 Score=141.82 Aligned_cols=66 Identities=29% Similarity=0.538 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
..+|.||-||+||..|+.+||+.|.+.+|||...|++||.++.|++.+|||||||||+|.||++..
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 356778889999999999999999999999999999999999999999999999999999986543
No 10
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.61 E-value=1.2e-16 Score=166.43 Aligned_cols=64 Identities=33% Similarity=0.448 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.+.||.||.||..|+.+||+.|+.++|+++..|.|||..|.|+||||||||||||+||||..+.
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 4578999999999999999999999999999999999999999999999999999999986654
No 11
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=2.4e-15 Score=152.14 Aligned_cols=74 Identities=30% Similarity=0.457 Sum_probs=67.0
Q ss_pred CCCC-CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhHH
Q 005853 94 RKKK-YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDK 167 (673)
Q Consensus 94 krr~-RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~ 167 (673)
|||. ||.||..|+++||+.|++.+|||...|+-||-++.|.|.+|+|||||||+||||.+++.......+|+.-
T Consensus 140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeygl 214 (332)
T KOG0494|consen 140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYGL 214 (332)
T ss_pred ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhcc
Confidence 3444 7889999999999999999999999999999999999999999999999999999998887777776653
No 12
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.58 E-value=8.1e-16 Score=148.82 Aligned_cols=64 Identities=33% Similarity=0.486 Sum_probs=61.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
|.||.||.||.+|+..||..|+.|+|-.-.+|++||+.|+|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999999999999999987764
No 13
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.57 E-value=2.8e-15 Score=150.06 Aligned_cols=68 Identities=32% Similarity=0.492 Sum_probs=63.6
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 87 ANEDGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 87 ~~~~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
-.++++|.||.||.|+.-||+.|.++|++++|+-..+|.+||.+|||+..||||||||||.|.||..+
T Consensus 115 ~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 115 PNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 34467888999999999999999999999999999999999999999999999999999999998765
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.56 E-value=4.7e-15 Score=150.82 Aligned_cols=66 Identities=33% Similarity=0.483 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
-+.|-|-|.+||..|..+||+.|..++|.++..+.|||..|||+||||||||||||+|+||..++.
T Consensus 196 tRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 196 TRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred eecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999999999876654
No 15
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.53 E-value=4.6e-15 Score=147.96 Aligned_cols=67 Identities=27% Similarity=0.529 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
..+|.||.||+||..|+++||+.|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3678899999999999999999999999999999999999999999999999999999999877654
No 16
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.52 E-value=9e-15 Score=144.15 Aligned_cols=64 Identities=36% Similarity=0.515 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
+..||.||.||.+|+..||+.|++.+|+++.+|.+++..|.|++.||||||||||+|.||.++.
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHH
Confidence 4468899999999999999999999999999999999999999999999999999999987653
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.49 E-value=1e-14 Score=117.13 Aligned_cols=57 Identities=46% Similarity=0.816 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
||+|+.||.+|+..||..|..++||+..++++||.+|||++.||+.||||||+++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 577899999999999999999999999999999999999999999999999999985
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=140.37 Aligned_cols=59 Identities=39% Similarity=0.639 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
||.||-||.+||+.|+..|++++|+++..|++||.+|||++.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 67899999999999999999999999999999999999999999999999999999754
No 19
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.41 E-value=2.4e-13 Score=110.69 Aligned_cols=53 Identities=19% Similarity=0.459 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHhCCCcceEEeecchhh
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPH----PDEKQRSELSRRLGLESKQIKFWFQNRR 146 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 146 (673)
+||.||.||++|++.||++|..++| |+...|++||.+|||++++|||||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4789999999999999999999999 9999999999999999999999999965
No 20
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.37 E-value=4.1e-13 Score=139.54 Aligned_cols=62 Identities=27% Similarity=0.548 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.|+||.|+.||.+|+++||..|++++||+...|++||-.++|++.+|+|||.|||+||||.+
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 47788889999999999999999999999999999999999999999999999999999744
No 21
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.34 E-value=5.4e-13 Score=137.73 Aligned_cols=63 Identities=33% Similarity=0.392 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.-||-||-||.|||..||+.|-+..|-++..|.|||..|+|+|.-|||||||||+|+|||...
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 457889999999999999999999999999999999999999999999999999999986543
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.33 E-value=6e-13 Score=106.00 Aligned_cols=56 Identities=45% Similarity=0.832 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
++.|++|+.+|+..||+.|..++||+..++.+||+++||+.+||+.||+|||++.|
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35667899999999999999999999999999999999999999999999998754
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.32 E-value=8.7e-13 Score=105.76 Aligned_cols=56 Identities=46% Similarity=0.875 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 96 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
++|..|+.+|+..||+.|..++||+..++.+||.++||+++||+.||+|||.+.++
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 56678999999999999999999999999999999999999999999999999885
No 24
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.31 E-value=1.8e-12 Score=133.04 Aligned_cols=74 Identities=26% Similarity=0.439 Sum_probs=67.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHD 166 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~ 166 (673)
..||+||++|+.|++.|+..|+..++|.+..|++|+.++||..|.|||||||||+|.||.++..-...+.+-+.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfr 239 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFR 239 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999888777766655444
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.29 E-value=5.2e-11 Score=115.30 Aligned_cols=189 Identities=15% Similarity=0.253 Sum_probs=139.0
Q ss_pred HHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChhhHhhhc
Q 005853 295 TAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDANRWAEMF 374 (673)
Q Consensus 295 ~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~~~W~~~F 374 (673)
.|..+++.+.+.+ ..|-...+.+ +..-|.+.++.. ....-|..++|..++.++.++|+|.+....-.
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~ 68 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWD 68 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhchh
Confidence 4667888887766 6897765432 233455555432 23678899999999999999999944332222
Q ss_pred ccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCCCCCcccc
Q 005853 375 PCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQT 454 (673)
Q Consensus 375 p~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~ 454 (673)
+ -+.+++.++.+ + +...++|..+..+.| +..|||.++|++.+.++|.++|+..|+|... .+....++|
T Consensus 69 ~-~~~~~~vl~~~-~--------~~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~~vR 136 (193)
T cd00177 69 K-NFEEFEVIEEI-D--------EHTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKGYVR 136 (193)
T ss_pred h-cceEEEEEEEe-C--------CCeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCCcEE
Confidence 2 34456666666 2 237889999999999 9999999999999999999999999999741 122226899
Q ss_pred ccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHH
Q 005853 455 YRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQR 512 (673)
Q Consensus 455 ~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR 512 (673)
+..+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 137 ~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 137 AEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 999999999999999999999999999886543 344555555666666666643
No 26
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.28 E-value=3.4e-13 Score=128.91 Aligned_cols=66 Identities=32% Similarity=0.444 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e 157 (673)
-+++|-|+.|+..|+..||+.|+.++|++..+|.|||..|+|+++|||.||||||+|.||++++.+
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999999999999999999999999999999999876544
No 27
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.26 E-value=3.5e-12 Score=123.38 Aligned_cols=66 Identities=33% Similarity=0.501 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHh
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHEN 158 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~ 158 (673)
..+++|+|.|.+|+..|++.|+.++||+...|..|+..|+++++-||+||||||++.|+.......
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~~ 115 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVE 115 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccchh
Confidence 446677889999999999999999999999999999999999999999999999999987655443
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.22 E-value=8.7e-12 Score=134.00 Aligned_cols=63 Identities=25% Similarity=0.441 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
..|||||||.|+......||++|.+|++|+..+.-+||.+|+|+..+|+|||+|||.|.||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 458899999999999999999999999999999999999999999999999999999999743
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.14 E-value=8.1e-12 Score=124.19 Aligned_cols=65 Identities=32% Similarity=0.513 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
..++|..|.+|+-.||..||+.|+..+||--.+|.+||..+|+++.||+|||||||+||||+...
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 45667778889999999999999999999999999999999999999999999999999987644
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.11 E-value=1.8e-09 Score=109.57 Aligned_cols=201 Identities=12% Similarity=0.155 Sum_probs=147.9
Q ss_pred HHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcCh---hh
Q 005853 294 LTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMV-IINSSALIETMMDA---NR 369 (673)
Q Consensus 294 ~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V-~~~~~~LVe~lmD~---~~ 369 (673)
.+.+++|+.++..+ .-|-...+.+ +-.-|.+..+ +...-.-|..+++ ...+..+.+.|+|. .+
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~----gi~iy~r~~~--------~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~ 75 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKN----NVKVWTKNPE--------NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKT 75 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCC----CeEEEEeeCC--------CCceEEEEEEEEeCCCCHHHHHHHHHChhhhhh
Confidence 47889999999654 4797764321 0111333222 2223445666665 57888999999996 56
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCCCC
Q 005853 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSA 449 (673)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~ 449 (673)
|-.. +..++.++.+ +....++|..+..|-| |..|||.++|..+..+ |..+|+..|++... .+..
T Consensus 76 Wd~~----~~e~~~ie~~---------d~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 76 WDSN----MIESFDICQL---------NPNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhh----hceeEEEEEc---------CCCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 6654 3346677766 2334788999999988 8999999999998776 88899999987432 2222
Q ss_pred CccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHHHHHHhhcccccc
Q 005853 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECLAVLMSSTITV 527 (673)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~cerla~~~~~~~~~ 527 (673)
..++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+-.++..|.++|+.....++.+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999999987765 443 24566666677799999999999999988887764
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.07 E-value=3.3e-09 Score=106.52 Aligned_cols=195 Identities=14% Similarity=0.161 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC--
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD-- 366 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD-- 366 (673)
+-++|..|.+|++++.. .+.-|-...+.. +.+.|-+.. ..+..-.-|..+.|..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~--------~i~v~~~~~----~~~~~~~~k~~~~i~~~~~~v~~~l~d~~ 69 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK--------NITVSWKPS----TEFTGHLYRAEGIVDALPEKVIDVIIPPC 69 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC--------CcEEEEecC----CCCCCEEEEEEEEEcCCHHHHHHHHHhcC
Confidence 35688899999999977 447897764321 112221110 112112358888999999999999998
Q ss_pred ---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhc-ccccccceeeEEEEeeeeecCceEEEEEEeccC
Q 005853 367 ---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQV-LSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDT 442 (673)
Q Consensus 367 ---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~-~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~ 442 (673)
+.+|... +..+..++-| . ....++|..+-- +.++|..|||.++||.++.++|.++|+-.|++.
T Consensus 70 ~~~r~~Wd~~----~~~~~~le~i-d--------~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 70 GGLRLKWDKS----LKHYEVLEKI-S--------EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred cccccccccc----ccceEEEEEe-C--------CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678754 5667777777 2 223456653322 235799999999999999999999999999965
Q ss_pred CCCCCCCCccccccccCCcceEeeCC--CCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHH
Q 005853 443 NREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (673)
Q Consensus 443 ~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~c 514 (673)
-. .+....++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 42 22233689999999999999886 57899999999987643 33 34566666666677888887764
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.03 E-value=5.6e-09 Score=105.01 Aligned_cols=196 Identities=14% Similarity=0.225 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHH-hcCh
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIET-MMDA 367 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~-lmD~ 367 (673)
..++++.|++|++.+.. ++-|-...+... +..-|.+..|. .+ -.-|..++|...+..+++. +.|.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~---~i~i~~r~~~~------~~---~~~k~~~~i~~~~~~v~~~l~~d~ 71 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTW---GDVVYSRNVPG------VG---KVFRLTGVLDCPAEFLYNELVLNV 71 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCC---CCEEEEEEcCC------Cc---eEEEEEEEEcCCHHHHHHHHHcCc
Confidence 57788999999999954 558977543200 01112232222 11 4578889999999998764 4454
Q ss_pred ---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcc-cccccceeeEEEEeeeeecCceEEEEEEeccCC
Q 005853 368 ---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL-SPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTN 443 (673)
Q Consensus 368 ---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~-SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 443 (673)
.+|-.. +..++.++.+ ++...++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++..
T Consensus 72 ~~~~~Wd~~----~~~~~~i~~~---------d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 72 ESLPSWNPT----VLECKIIQVI---------DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred cccceecCc----ccceEEEEEe---------cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 567665 2335555555 23345666444333 3689999999999999866 7799999998733
Q ss_pred CCCCCCCccccccccCCcceEeeCCC--CcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHHHH
Q 005853 444 REGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECL 517 (673)
Q Consensus 444 ~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~cerl 517 (673)
. .+....++|....++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.+++.|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122237899999999999999987 6899999999987754 333 2377778888889999999998753
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=99.02 E-value=1.5e-10 Score=116.93 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||++++.
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4577889999999999999999999999999999999999999999999999999999997654
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.88 E-value=2.3e-08 Score=101.13 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN 368 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~~ 368 (673)
...|+++|++|++++-+ +.-.|-....+...++ |-+.+ ..+.+---|..|+|..++.+|+|.+-|.+
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~gWk~~k~~~~~~v----~~k~~--------~~~~gkl~k~egvi~~~~e~v~~~l~~~e 69 (204)
T cd08904 3 FKKIAQETSQEVLGYSR-DTSGWKVVKTSKKITV----SWKPS--------RKYHGNLYRVEGIIPESPAKLIQFMYQPE 69 (204)
T ss_pred HHHHHHHHHHHHHhhhh-cccCCeEEecCCceEE----EEEEc--------CCCCceEEEEEEEecCCHHHHHHHHhccc
Confidence 35788999999999976 5678976543311110 01111 23333567899999999999999999876
Q ss_pred hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehh-cccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCC
Q 005853 369 RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ-VLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGL 447 (673)
Q Consensus 369 ~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~-~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~ 447 (673)
...+- =..+..++.++-| ++...+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++.-.- +
T Consensus 70 ~r~~W-d~~~~~~~iie~I---------d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~-P 138 (204)
T cd08904 70 HRIKW-DKSLQVYKMLQRI---------DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQC-P 138 (204)
T ss_pred hhhhh-cccccceeeEEEe---------CCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCC-C
Confidence 44332 2256678888888 333456775554 3457899999999999999999999999999974431 2
Q ss_pred CCCccccccccCCcceEeeCCCC--cceEEEEEeeeeccc
Q 005853 448 SADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDES 485 (673)
Q Consensus 448 ~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 485 (673)
....++|++-.|+||+|++.+++ +|++||+-+++..-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 23479999999999999999874 899999999776633
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.87 E-value=1e-09 Score=119.25 Aligned_cols=65 Identities=29% Similarity=0.561 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.+++.+|.|++|++.|++.||+.|+.++||+...|++||+++++++.+|++||+|||++++|+..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 35667778899999999999999999999999999999999999999999999999999998653
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.76 E-value=1.4e-07 Score=95.47 Aligned_cols=193 Identities=11% Similarity=0.167 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcCh-
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDA- 367 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~- 367 (673)
..+++++|+++++.+-+ .+..|-...++ ++.+.|.+... .+..-.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~--------~~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~~ 69 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRT--------NEVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPAA 69 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcC--------CCEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhcc
Confidence 46789999999999974 66789776433 12233322110 000012678899999999999999965
Q ss_pred ----hhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccc---cccceeeEEEEeeeeecCceEEEEEEec
Q 005853 368 ----NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP---LVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (673)
Q Consensus 368 ----~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SP---Lvp~Re~~flRyckq~~~g~w~VvDvS~ 440 (673)
.+|-.. +..++.|+-| ++...+.|. ..+.| +|-+|||..+|+.++.++|.++|.-.|+
T Consensus 70 ~~~r~~W~~~----~~~~~vle~i---------d~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 70 GGLRVKWDQN----VKDFEVVEAI---------SDDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred chhhhhhhhc----cccEEEEEEe---------cCCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 588876 3445555655 223334444 44555 7999999999999999999988777776
Q ss_pred cCCCCCCCCCccccccccCCcceEeeCCC--CcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHH
Q 005853 441 DTNREGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (673)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~c 514 (673)
..-. -+....++|++..|+|++|...++ +.|+|||+-|++..- .+| +.++++.++=...-.+..|.++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 6421 122237899999999999999964 589999998887642 344 23344333333334455554443
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.70 E-value=2.5e-07 Score=93.70 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred CCceeeeecceeEEechhHHH-HHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceee
Q 005853 341 GFVTEASRETGMVIINSSALI-ETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQA 419 (673)
Q Consensus 341 g~~~EasR~~~~V~~~~~~LV-e~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~ 419 (673)
+...-.-|....|.-.+..++ .++.++..|-.. +..+++++.| ++...+.|--+.-+-|+ |.|||
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~----~~~~~~ie~l---------d~~tdi~~y~~~~~~P~-~~RD~ 113 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDED----FLQWKVVETL---------DKQTEVYQYVLNCMAPH-PSRDF 113 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhh----cceeEEEEEe---------CCCcEEEEEEeecCCCC-CCCEE
Confidence 444456777777777677664 466677888877 3458888888 44456777777777776 99999
Q ss_pred EEEEeeee-ecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccc
Q 005853 420 KFLRFCKQ-HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES 485 (673)
Q Consensus 420 ~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 485 (673)
+.+|+-++ .++|.++|+..|++.....+ ..++|+..+-+|++|+++++|.|+||++-|++..-+
T Consensus 114 v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 114 VVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 99999765 46999999999999765432 268999999999999999999999999999987543
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.67 E-value=2.4e-07 Score=92.88 Aligned_cols=163 Identities=15% Similarity=0.229 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh-hHhh
Q 005853 294 LTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN-RWAE 372 (673)
Q Consensus 294 ~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~~-~W~~ 372 (673)
+.+.++|++-+...+.-|....+.. +-.=|.|..+ .++..-+=|..++|...+.++++.|+|.. +|-.
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~----gi~I~~k~~~-------~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~ 72 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSD----HVELAFKKVD-------DGHPLRLWRASTEVEAPPEEVLQRILRERHLWDD 72 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCC----cEEEEEEeCC-------CCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccch
Confidence 4778899999998899997753210 1112333322 23344567888899988999998777753 5655
Q ss_pred hcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee-ecCceEEEEEEeccCCCCCCCCCc
Q 005853 373 MFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ-HIEGVWAVVDVSIDTNREGLSADP 451 (673)
Q Consensus 373 ~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~~~~~~ 451 (673)
. +.+++.++.+ +....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ . .
T Consensus 73 ~----~~~~~vie~i---------d~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p-~-g 136 (197)
T cd08869 73 D----LLQWKVVETL---------DEDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP-L-G 136 (197)
T ss_pred h----hheEEEEEEe---------cCCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC-C-C
Confidence 4 4557777776 2334578888888877 59999999998875 67889999999986421111 2 6
Q ss_pred cccccccCCcceEeeCCCCcceEEEEEeeeec
Q 005853 452 FQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (673)
Q Consensus 452 ~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (673)
++|+..+++|++|++.++|.|+||++-|++.-
T Consensus 137 ~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~ 168 (197)
T cd08869 137 GVRAVVLASRYLIEPCGSGKSRVTHICRVDLR 168 (197)
T ss_pred CEEEEEEeeeEEEEECCCCCeEEEEEEEECCC
Confidence 89999999999999999999999999999864
No 39
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.65 E-value=2e-08 Score=103.83 Aligned_cols=62 Identities=24% Similarity=0.532 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
+..||||||.+-....+.||++|..+|.|+.+....+|++|.|....|+|||+|+|+|.||.
T Consensus 306 ~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 306 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred ccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999998874
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.64 E-value=2.6e-07 Score=106.73 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=107.8
Q ss_pred eeeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehh--cccccccceeeEEE
Q 005853 345 EASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ--VLSPLVPVRQAKFL 422 (673)
Q Consensus 345 EasR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~--~~SPLvp~Re~~fl 422 (673)
-+=|+.|+|...+.+|.|.+|+.+...-.+=+.+..++-|+.| +|...++|.-++ .+...+-+|||+++
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I---------D~htdI~Y~~~~~~~~~~~ispRDFV~~ 297 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV---------DGHTAILYHRLQLDWFPMFVWPRDLCYV 297 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe---------cCCeEEEEEEeccccccCccCcceeEEE
Confidence 5678999999999999999997773333233446778999988 677888887774 45567777999999
Q ss_pred EeeeeecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCC--C--CcceEEEEEeeeeccccc
Q 005853 423 RFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVP--N--NYSKVTWIEHAEYDESIV 487 (673)
Q Consensus 423 Ryckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 487 (673)
||-++.+||+++|+=+|+..-.-- ....++|.+..|+||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 298 Rywrr~eDGsYvil~~Sv~Hp~cP-P~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 298 RYWRRNDDGSYVVLFRSREHENCG-PQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEcCCCcEEEeeeeeecCCCC-CCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999999998854322 223799999999999999964 3 379999999999988874
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.47 E-value=1.3e-06 Score=88.46 Aligned_cols=192 Identities=12% Similarity=0.184 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecC-C-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhc-
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSL-D-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMM- 365 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lm- 365 (673)
-..++..|++|++++.+ .+..|-... + .+..| |.+.+|.. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~~ 70 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGDKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELVD 70 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCCEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHHh
Confidence 56889999999999986 666897652 2 11111 23444333 1 355667799999999995555
Q ss_pred Ch---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccc--cccceeeEEEEeeeeecCceEEEEEEec
Q 005853 366 DA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (673)
Q Consensus 366 D~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SP--Lvp~Re~~flRyckq~~~g~w~VvDvS~ 440 (673)
|. .+|... |.-.++| ... +..-.++|. ..++.| +|-.|||..+|+.++.+++. +++..|.
T Consensus 71 d~e~~~~W~~~-------~~~~~vl-~~i-----d~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 71 RMEQMGEWNPN-------VKEVKIL-QRI-----GKDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred chhhhceeccc-------chHHHHH-hhc-----CCCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 466665 4444444 221 222345664 667766 79999999999999986654 5666775
Q ss_pred cCCCCCCCCCccccccccCCcceEeeCCC--CcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 441 DTNREGLSADPFQTYRRLPSGFVVQDVPN--NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
+.-. .+....++|.+..++|++|+++++ |.|+|||+-|++..-+ +|. .|++..++=..--++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 5321 122237899999999999999988 9999999999987655 433 34555555556677888877654
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.42 E-value=5e-06 Score=84.40 Aligned_cols=194 Identities=10% Similarity=0.150 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecC-C-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHhc
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSL-D-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETMM 365 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LV-e~lm 365 (673)
....+.+||+++.++... +..|.-.. . .| .+.|.+........| |.-++|...+..|. +.|.
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~ll~ 70 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEVIL 70 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHHHh
Confidence 567899999999999764 45797532 1 22 222222111011223 66677788888885 6888
Q ss_pred ChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccc--cccceeeEEEEeeeeecCceEEEEEEeccCC
Q 005853 366 DANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFCKQHIEGVWAVVDVSIDTN 443 (673)
Q Consensus 366 D~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SP--Lvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 443 (673)
|.+...+=.+.+. .++.|+-+ + ..--+.| ++-.|.+ .|..|||-.+|+.++.+++ ++++..|++..
T Consensus 71 D~~~~~~W~~~~~-~~~vi~~~-~--------~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~ 138 (209)
T cd08906 71 QPEKMVLWNKTVS-ACQVLQRV-D--------DNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS 138 (209)
T ss_pred ChhhccccCccch-hhhheeec-c--------CCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC
Confidence 8865444433333 35665555 2 2224557 6666654 6899999999999998888 57777887643
Q ss_pred CCCCCCCccccccccCCcceEeeC--CCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHH
Q 005853 444 REGLSADPFQTYRRLPSGFVVQDV--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQC 514 (673)
Q Consensus 444 ~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~c 514 (673)
. .+....++|.+..++|++|++. .+|.|+|||+-|++..-+ +|. .+++..++=..--.+..|.++.
T Consensus 139 ~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~---~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 139 H-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPR---YLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred C-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222378999999999999985 577999999999987653 332 3454444444444555554443
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.31 E-value=1e-05 Score=81.58 Aligned_cols=192 Identities=12% Similarity=0.155 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC--
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD-- 366 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD-- 366 (673)
...+|.++-+++++--+.++-.|-.-...+..+. |.+ ...-|.+---|.-|+|.-....|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~v----~~k--------~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~ 70 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKDVTV----WRK--------PSEEFGGYLYKAQGVVEDVYNRIVDHIRPGP 70 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCCEEE----EEe--------cCCcCCCceEEEEEEecCCHHHHHHHHhccc
Confidence 3567878888899987779999976532210111 111 11234444567778888889999999998
Q ss_pred -hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCC
Q 005853 367 -ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNRE 445 (673)
Q Consensus 367 -~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~ 445 (673)
+.+|-+. |..++.|+-| . .+++-.-|.=.-.+-++|-+|||.-+||+++-++|. +.|=||++.-.
T Consensus 71 ~r~~Wd~~----v~~~~Iie~I-d-------~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~- 136 (202)
T cd08902 71 YRLDWDSL----MTSMDIIEEF-E-------ENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE- 136 (202)
T ss_pred chhcccch----hhheeHhhhh-c-------CCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC-
Confidence 4588876 6667777777 2 333333355566777899999999999999999998 77788887543
Q ss_pred CCCCCccccccccCCcceEeeCCCC--cceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHH
Q 005853 446 GLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQR 512 (673)
Q Consensus 446 ~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR 512 (673)
.. +.++|....|+||++.+++|| .|+.||+-++++.-+ |=+-++++.++=..=-....|++
T Consensus 137 -~p-pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk 199 (202)
T cd08902 137 -AR-PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKK 199 (202)
T ss_pred -CC-CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHH
Confidence 22 279999999999999999988 677889999776644 22344544443322223444433
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.24 E-value=6.6e-07 Score=92.47 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
|...-...|...|.+++||+..++.+||+.+||+..||-.||.|||+++|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 566667899999999999999999999999999999999999999999983
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.17 E-value=2.5e-05 Score=79.21 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhhccCCCCeeecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC-hhhH
Q 005853 293 ALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD-ANRW 370 (673)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD-~~~W 370 (673)
-+..+++|++.|..--=-|+.-.. .+.|. .|.| +..|...-.-|....+...+..++..|+| +.+|
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~~el----~~~k--------~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~W 78 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQAEL----SYKK--------VSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLW 78 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCcEEE----EEec--------cCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHH
Confidence 347788888888765556766321 11111 1112 23344445667777777788888855555 5578
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeee-eecCceEEEEEEeccCCCCCCCC
Q 005853 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCK-QHIEGVWAVVDVSIDTNREGLSA 449 (673)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~ 449 (673)
-.. +..++.|+-| + ..-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... ...
T Consensus 79 d~~----~~e~~vIe~l-d--------~~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~--~P~ 142 (204)
T cd08908 79 DVD----LLDSKVIEIL-D--------SQTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR--APV 142 (204)
T ss_pred HHH----hhheEeeEec-C--------CCceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc--CCc
Confidence 776 4556777766 2 223578888889988 7999999997765 478999999999988542 222
Q ss_pred CccccccccCCcceEeeCCCCcceEEEEEeeeec
Q 005853 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (673)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (673)
..+|.+.+-+|++|+++++|.|+||.+-|++--
T Consensus 143 -~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 143 -AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred -CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 368999999999999999999999999999754
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.12 E-value=3.9e-05 Score=77.71 Aligned_cols=200 Identities=18% Similarity=0.112 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcChh
Q 005853 289 LIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMDAN 368 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD~~ 368 (673)
+++=+...|.|+.+..+. +.-|....+.. +..-|.|.+|.+ ..-+-|.-|+|..+...++++|.|.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~----~i~v~~r~~~~~--------~~~~~k~e~~i~~~~~~~~~vl~d~~ 69 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE----GIRVYYKFEPDG--------SLLSLRMEGEIDGPLFNLLALLNEVE 69 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC----CeEEEEEeCCCC--------CEEEEEEEEEecCChhHeEEEEehhh
Confidence 445566888999988775 56798865431 222233333332 24677888999999999999999998
Q ss_pred hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEE-Eeeeee-cCceEEEEEEeccCCCC-
Q 005853 369 RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFL-RFCKQH-IEGVWAVVDVSIDTNRE- 445 (673)
Q Consensus 369 ~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~fl-Ryckq~-~~g~w~VvDvS~d~~~~- 445 (673)
...+-+|.. ..++.++.+ + ..-++.|..+-+|-| +-.||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 70 ~~~~W~p~~-~~~~~l~~~-~--------~~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 70 LYKTWVPFC-IRSKKVKQL-G--------RADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hHhhhcccc-eeeEEEeec-C--------CceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 777777763 345666655 2 123577777777777 888999986 556777 89999999999985432
Q ss_pred -------CCCCC-ccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 446 -------GLSAD-PFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 446 -------~~~~~-~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
-+... .++|.....+|++|+++++|.|+|+++-|++-.-+-+|.= |++...--.+...+..|++.|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12233 6899999999999999999999999999966332225543 2333333445556666666665
No 47
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.02 E-value=6.3e-05 Score=76.21 Aligned_cols=151 Identities=16% Similarity=0.266 Sum_probs=110.4
Q ss_pred eeeecceeEE-echhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeE
Q 005853 345 EASRETGMVI-INSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAK 420 (673)
Q Consensus 345 EasR~~~~V~-~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~ 420 (673)
-.=|+.+++. +.+..|.++|+|.+ +|... ++. .++.+ + .+ ..++|-.+..|-| |..|||.
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~---~~~---~~~~~-~-------~~-~~i~y~~~k~PwP-vs~RD~V 112 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY---VKE---LYEKE-C-------DG-ETVIYWEVKYPFP-LSNRDYV 112 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH---HHh---heeec-C-------CC-CEEEEEEEEcCCC-CCCceEE
Confidence 3678788887 79999999999975 56654 322 22333 2 12 3578999999999 9999999
Q ss_pred EEEeeeee-cCc--eEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccc
Q 005853 421 FLRFCKQH-IEG--VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSS 497 (673)
Q Consensus 421 flRyckq~-~~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~s 497 (673)
++|-.... .+| .|+|+..|++.. ..+....++|....-+|++|++..++.|+||++-|.+-. ..+|. -+++.
T Consensus 113 ~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~ 187 (207)
T cd08910 113 YIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINW 187 (207)
T ss_pred EEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHH
Confidence 99644433 344 689988887643 122223789999999999999998889999999998853 23443 25677
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 005853 498 GMGFGAPKWVATLQRQCEC 516 (673)
Q Consensus 498 g~afGA~rWla~LqR~cer 516 (673)
....+...|+..|+..|..
T Consensus 188 ~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 188 AAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred HHHHhhHHHHHHHHHHHhc
Confidence 7788888999999888853
No 48
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.94 E-value=0.00011 Score=72.60 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEee
Q 005853 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFC 425 (673)
Q Consensus 346 asR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyc 425 (673)
.-|.+++|..++.++.+++.|.+.|.+-=|.+ .+|+.++-+ . ..-.++|..+..+=| |..|||.+.|..
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~-~~~~vie~~----~-----~~~~i~~~~~~~p~p-vs~Rdfv~~~~~ 110 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNC-KESRVLKRT----D-----DNERSVYTVIDLPWP-VKDRDMVLRSTT 110 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhc-ceEEEeecC----C-----CCcEEEEEEEecccc-cCCceEEEEEEE
Confidence 55888899999999999999998876654432 334444433 1 112456666665544 789999987654
Q ss_pred eee-cCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHH
Q 005853 426 KQH-IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAP 504 (673)
Q Consensus 426 kq~-~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~ 504 (673)
... ++|..+|.=.|.+...+ ....++|++.+.+|+.|++.++|.|+||++-|++..-+...-+.+.+ +.=+..
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P--~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~----~~~~~~ 184 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALP--EQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAF----AKDAPY 184 (195)
T ss_pred EEcCCCCEEEEEeecCCccCC--CCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHH----HHHHHH
Confidence 433 36777776666654312 12257899999999999999999999999999888644333343433 333456
Q ss_pred HHHHHHHHHH
Q 005853 505 KWVATLQRQC 514 (673)
Q Consensus 505 rWla~LqR~c 514 (673)
+++++|.++|
T Consensus 185 ~~l~~l~~~~ 194 (195)
T cd08876 185 NTLENLRKQL 194 (195)
T ss_pred HHHHHHHHhh
Confidence 7788886654
No 49
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.91 E-value=9e-05 Score=75.26 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=88.5
Q ss_pred ceeEEechhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhccccc-ccceeeEEEEee
Q 005853 350 TGMVIINSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPL-VPVRQAKFLRFC 425 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPL-vp~Re~~flRyc 425 (673)
-++|...+.+|++.|.|.. +|-.+ +.+.+|| ..- +....++|.....|=|+ ++.|||..+|-.
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl-~~~-----~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~ 116 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIH-KTF-----TEDICLVYLVHETPLCLLKQPRDFCCLQVE 116 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeee-eec-----CCCeEEEEEEecCCCCCCCCCCeEEEEEEE
Confidence 4477889999999998875 66666 5666666 321 23446777777666555 399999999955
Q ss_pred eeecCceEEEEEEeccC-CCCCCCCC-ccccccccCCcceEeeC---CCCcceEEEEEeeeecccccc
Q 005853 426 KQHIEGVWAVVDVSIDT-NREGLSAD-PFQTYRRLPSGFVVQDV---PNNYSKVTWIEHAEYDESIVH 488 (673)
Q Consensus 426 kq~~~g~w~VvDvS~d~-~~~~~~~~-~~~~~~r~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 488 (673)
...+++.. |.=.|++. ..+ ... .++|.+.+++|++|+++ ++|.|+||.+-|+|---..+|
T Consensus 117 ~~~~~~~v-i~~~SV~~~~~P--~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 117 AKEGELSV-VACQSVYDKSMP--EPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred EECCCcEE-EEEEecccccCC--CCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 55555544 66677765 222 122 58999999999999999 999999999999987533343
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.84 E-value=8e-05 Score=75.31 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhccCCCCeeecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhhH
Q 005853 293 ALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIETMMDANRW 370 (673)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~-~~~~~LVe~lmD~~~W 370 (673)
-+..+++|++.+....=-|+.... .+.|+ |.|.=++ |...--=|.+.-|. ..+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev-----~~kk~~d-------~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTEL-----ACKKVGD-------GHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEE-----EEEeCCC-------CCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 347888999999877778987421 11121 1111111 11111112222222 3445566999999999
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeee-eecCceEEEEEEeccCCCCCCCC
Q 005853 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCK-QHIEGVWAVVDVSIDTNREGLSA 449 (673)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyck-q~~~g~w~VvDvS~d~~~~~~~~ 449 (673)
=+. +-+.++|+.| . ..-++-|=-+..| +.+|+|+|.+||.-+ .+..|.-+|+.+|++....-+.
T Consensus 79 D~~----m~e~~~Ie~L-d--------~n~dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~- 143 (205)
T cd08907 79 DED----LLHSQVIEAL-E--------NNTEVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLE- 143 (205)
T ss_pred hHH----HHhhhhheee-c--------CCCEEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCC-
Confidence 887 4668999988 2 1112333223333 568999999999864 4677899999999986543322
Q ss_pred CccccccccCCcceEeeCCCCcceEEEEEeeeeccc
Q 005853 450 DPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES 485 (673)
Q Consensus 450 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 485 (673)
+-+|+--+=|||||++++.|.|+||-+-|++..-+
T Consensus 144 -~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 144 -AGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 33999999999999999999999999999987544
No 51
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.81 E-value=1.1e-05 Score=83.02 Aligned_cols=58 Identities=24% Similarity=0.546 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
||+|+.|+..-.++|...| ..+|||+...+++||++++++-.||-.||-|+|-+.||.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 5677789999999999999 458999999999999999999999999999999999864
No 52
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.73 E-value=2.5e-05 Score=79.04 Aligned_cols=65 Identities=29% Similarity=0.636 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
...+.++.|+.++..|+..++..|..+++|+...+++|+..+|++++.|++||||+|++.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 149 SNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 35677888999999999999999999999999999999999999999999999999999997544
No 53
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.68 E-value=8e-06 Score=61.99 Aligned_cols=34 Identities=38% Similarity=0.752 Sum_probs=28.8
Q ss_pred cCCCCCHHHHHHHHHHhCCCcceEEeecchhhhH
Q 005853 115 ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148 (673)
Q Consensus 115 ~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak 148 (673)
.+|||+..++++||+++||+.+||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999998864
No 54
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.63 E-value=0.0012 Score=66.87 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=132.3
Q ss_pred HHHHHHhhccCC--CCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeE-EechhHHHHHhcChh---hH
Q 005853 297 MDELIKMAEADS--PLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMV-IINSSALIETMMDAN---RW 370 (673)
Q Consensus 297 m~El~~la~~~~--plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V-~~~~~~LVe~lmD~~---~W 370 (673)
++||+.+.+.+. .-|-...+....-....-|.|.-+ |...-.=|..+++ .+.+..|.+.|+|.+ +|
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~--------~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W 79 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPK--------GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW 79 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccC--------CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh
Confidence 345666655443 468776432111111223444321 2223456777777 569999999999975 56
Q ss_pred hhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCCCCCCCCC
Q 005853 371 AEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSAD 450 (673)
Q Consensus 371 ~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~ 450 (673)
-.. +...++| .... +-...++|-.+..|-|+ -.||+.+.|-..+..+|..+|+=-|++... .+..
T Consensus 80 d~~-------~~~~~~l-e~~~----~~~~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~-~P~~- 144 (209)
T cd08870 80 DET-------VIEHETL-EEDE----KSGTEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPS-VPRS- 144 (209)
T ss_pred hhh-------eeeEEEE-EecC----CCCcEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCC-CCCC-
Confidence 665 4444445 3211 10147899999999988 899999999777777899988888877521 1212
Q ss_pred ccccccccCCcceEeeC--CCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHHH
Q 005853 451 PFQTYRRLPSGFVVQDV--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (673)
Q Consensus 451 ~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~cer 516 (673)
.++|.+.+=||++|++. .+|.++|+++-|.+- ...+|. -|++.....|+..++..|.+.|..
T Consensus 145 ~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 145 GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 58999999999999999 788999999999863 223554 467888899999999999888853
No 55
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.57 E-value=0.002 Score=66.82 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=124.0
Q ss_pred HHHHHHHHHhhcc--CCCCeeecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHHhcChhh
Q 005853 294 LTAMDELIKMAEA--DSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIETMMDANR 369 (673)
Q Consensus 294 ~~Am~El~~la~~--~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~-~~~~~LVe~lmD~~~ 369 (673)
.+-.+|.+++|+. ++.-|--..+ ++ ++.|-+... ..|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~~--~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREVE--EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEECC--CCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3556788998865 5557966532 22 233322211 1134445678888888 889999999999874
Q ss_pred HhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecC-------ceEEEEEEeccC
Q 005853 370 WAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIE-------GVWAVVDVSIDT 442 (673)
Q Consensus 370 W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~-------g~w~VvDvS~d~ 442 (673)
-.+=... +..++.++-+ +....+.|..+-.|=| +-.|||.|+|+-++.++ +.|+|+..|++.
T Consensus 78 r~~Wd~~-~~~~~vie~l---------~~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h 146 (235)
T cd08872 78 RMDWETT-LENFHVVETL---------SQDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH 146 (235)
T ss_pred HHHHHhh-hheeEEEEec---------CCCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC
Confidence 3332222 3335555555 2233567888888999 69999999999999876 789999999874
Q ss_pred CCCCCCCCccccccc---cCCcceEee------C--CCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHH
Q 005853 443 NREGLSADPFQTYRR---LPSGFVVQD------V--PNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQ 511 (673)
Q Consensus 443 ~~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~Lq 511 (673)
-. .+....++|.+. +=.|.+|.+ + .||.|+||++-|++---+--.- +++.....++-.+|..|-
T Consensus 147 ~~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~~~ 221 (235)
T cd08872 147 DS-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPAS----VLRAVYKREYPKFLKRFT 221 (235)
T ss_pred cc-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHH----HHHHHHHhhchHHHHHHH
Confidence 32 122225777765 222333332 1 5889999999999754443323 345555666777777775
Q ss_pred HHHH
Q 005853 512 RQCE 515 (673)
Q Consensus 512 R~ce 515 (673)
-++.
T Consensus 222 ~~~~ 225 (235)
T cd08872 222 SYVQ 225 (235)
T ss_pred HHHH
Confidence 5543
No 56
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.51 E-value=0.0012 Score=66.85 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=110.6
Q ss_pred eeecceeE-EechhHHHHHhcChh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEE
Q 005853 346 ASRETGMV-IINSSALIETMMDAN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKF 421 (673)
Q Consensus 346 asR~~~~V-~~~~~~LVe~lmD~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~f 421 (673)
.=|+.+++ ...+..+++.|+|.+ +|-.. +...++| .-.. +-...++|..+..|-|+ -.||+.+
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~l-e~~~----~~~~~i~y~~~~~P~P~-s~RD~V~ 112 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVV-DEDP----ETGSEIIYWEMQWPKPF-ANRDYVY 112 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEE-EccC----CCCCEEEEEEEECCCCC-CCccEEE
Confidence 46665644 788999999999986 56665 4445555 3211 11337889999999996 8999999
Q ss_pred EEeeeeec-CceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCC---CCcceEEEEEeeeecccc-cccccccccc
Q 005853 422 LRFCKQHI-EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVP---NNYSKVTWIEHAEYDESI-VHHLCRPLLS 496 (673)
Q Consensus 422 lRyckq~~-~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~---nG~skVtwVeH~e~d~~~-v~~l~rpl~~ 496 (673)
.|-..+.+ +|.++|+-.|++... .+....++|.....+|++|++.. ++.|+|+++-|. |+.. +|.- +++
T Consensus 113 ~r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN 186 (207)
T cd08911 113 VRRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITS 186 (207)
T ss_pred EEEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHH
Confidence 99876665 577889888887421 11123689999999999999983 677999988885 6663 6542 456
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 005853 497 SGMGFGAPKWVATLQRQCEC 516 (673)
Q Consensus 497 sg~afGA~rWla~LqR~cer 516 (673)
.-...++-.||..|++-|..
T Consensus 187 ~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 187 WVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHHhhccHHHHHHHHHHhc
Confidence 66777788899999888753
No 57
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.46 E-value=7.6e-05 Score=83.96 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQM 149 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~ 149 (673)
..+.||.|.+||..|.+.|..+|+++++|+....+.|+.+|+|..+-|..||-|-|.|.
T Consensus 417 ~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 417 MLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred cccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 44567889999999999999999999999999999999999999999999999987765
No 58
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.45 E-value=0.0011 Score=68.84 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=86.9
Q ss_pred CCceeeeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeE
Q 005853 341 GFVTEASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAK 420 (673)
Q Consensus 341 g~~~EasR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~ 420 (673)
.|++|+. |...+.+|++.|.|.+...+=.+ .+...++| ..- +....++|..+..|. -+..|||.
T Consensus 78 ~fk~e~~-----vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI-~~i-----d~d~~iyy~~~p~Pw-Pvk~RDfV 141 (235)
T cd08873 78 SFCVELK-----VQTCASDAFDLLSDPFKRPEWDP----HGRSCEEV-KRV-----GEDDGIYHTTMPSLT-SEKPNDFV 141 (235)
T ss_pred EEEEEEE-----ecCCHHHHHHHHhCcchhhhhhh----cccEEEEE-EEe-----CCCcEEEEEEcCCCC-CCCCceEE
Confidence 3455544 88899999999999874443322 25555555 211 223356776655555 48899999
Q ss_pred EEEeeeeec-C-ceEEEEEEecc-CCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeee
Q 005853 421 FLRFCKQHI-E-GVWAVVDVSID-TNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAE 481 (673)
Q Consensus 421 flRyckq~~-~-g~w~VvDvS~d-~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 481 (673)
++|+-++.. + +..+|.=.|+. ...+ ....++|.+.+=+|++|++.++|.|+||.+-|++
T Consensus 142 ~~~s~~~~~~~~~~~~I~~~SV~h~~~P--p~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 142 LLVSRRKPATDGDPYKVAFRSVTLPRVP--QTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred EEEEEEeccCCCCeEEEEEeeeecccCC--CCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 999999844 4 34777777765 2222 2237899999999999999999999999999986
No 59
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.90 E-value=0.00057 Score=83.33 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
-.+|+.|++++..|++.+...|....||...+.+.|.+.++|+++.|++||||-|+|.|+..+
T Consensus 901 ~~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 901 MGRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 346788899999999999999999999999999999999999999999999999999997655
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.89 E-value=0.011 Score=61.66 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=84.3
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccc--cccceeeEEEEee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFC 425 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SP--Lvp~Re~~flRyc 425 (673)
|.-++|...+..|++.|.|.+...+=.+.+. .++.|+-+ + . + . . +|... .+.+ -|..|||-.++..
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~-e~~vIe~i-d---~---~-~-~-vY~v~-~~p~~~pvs~RDfV~~~s~ 151 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYR-SCELVQQV-D---E---D-D-A-IYHVT-SPSLSGHGKPQDFVILASR 151 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhcc-EEEEEEec-C---C---C-c-E-EEEEe-cCCCCCCCCCCeEEEEEEE
Confidence 3336889999999999999875444333332 25555555 2 1 1 1 1 23332 1222 5889999999988
Q ss_pred eeecC-c-eEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccc
Q 005853 426 KQHIE-G-VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHH 489 (673)
Q Consensus 426 kq~~~-g-~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 489 (673)
.+.++ | .++|+=.|+..-. .+....++|.+.+..|++|++.++|.|+||++-|++ +..+|.
T Consensus 152 ~~~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~ 214 (240)
T cd08913 152 RKPCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPY 214 (240)
T ss_pred EeccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccH
Confidence 66543 4 4666666654322 222347899999999999999999999999999988 234444
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.81 E-value=0.0082 Score=62.38 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=88.4
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhccc-ccccceeeEEEEe
Q 005853 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLS-PLVPVRQAKFLRF 424 (673)
Q Consensus 346 asR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~S-PLvp~Re~~flRy 424 (673)
+-|.-..|...+..|++.|.|.+...+=.+.+. .++.|+-+ + . +. . +|...-.|- |+ ..|||-++|-
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~-e~~vI~ql-d---~---~~--~-vY~~~~pPw~Pv-k~RD~V~~~s 146 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFL-SCEVIDWV-S---E---DD--Q-IYHITCPIVNND-KPKDLVVLVS 146 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhhc-eEEEEEEe-C---C---Cc--C-EEEEecCCCCCC-CCceEEEEEE
Confidence 344445788999999999999875443322222 24444444 1 1 11 1 466543442 44 8999999877
Q ss_pred eeeec-Cce-EEEEEEeccC-CCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeecccccccc
Q 005853 425 CKQHI-EGV-WAVVDVSIDT-NREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHL 490 (673)
Q Consensus 425 ckq~~-~g~-w~VvDvS~d~-~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 490 (673)
-.+.. +|. ++|.=.|+.. ..+. ...++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 147 ~~~~~~dg~~~~I~~~SVp~~~~Pp--~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 147 RRKPLKDGNTYVVAVKSVILPSVPP--SPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EEecCCCCCEEEEEEeecccccCCC--CCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 76666 885 8888888775 3222 236899999899999999999999999999995 4556544
No 62
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.99 E-value=0.035 Score=60.27 Aligned_cols=62 Identities=19% Similarity=0.372 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.++|++..+.......|+.... ..+||+..++..||+++||+..||..||-|.|-+..+-..
T Consensus 238 ~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 238 SKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 3556666799998999887632 2589999999999999999999999999998877664433
No 63
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.17 E-value=0.011 Score=48.26 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhh
Q 005853 106 IQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (673)
Q Consensus 106 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 146 (673)
++-|++.|...+++.......|..+.+|+..||+.||-.|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 56799999999999999999999999999999999997654
No 64
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.80 E-value=0.5 Score=46.62 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcCC
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
|++.+|.... ..++|+|..++.. + +.+..-.++..++.||+.||+++.|...|.+||--.-+
T Consensus 14 ~~~~~W~~~~---~~~~v~v~~~~~~---~---~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~ 75 (195)
T cd08876 14 APDGDWQLVK---DKDGIKVYTRDVE---G---SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKE 75 (195)
T ss_pred CCCCCCEEEe---cCCCeEEEEEECC---C---CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcce
Confidence 4555699876 3579999998862 2 12445577778999999999999999999999965433
No 65
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=90.53 E-value=0.58 Score=47.66 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=44.8
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhhhcC
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSN 628 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~ 628 (673)
..++|.... . .++|+|..++..+ +.+...++...++ +|++.+|++|.|...|.+||....
T Consensus 21 ~~~~W~~~~-~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~ 81 (222)
T cd08871 21 STDGWKLKY-N--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMI 81 (222)
T ss_pred CCCCcEEEE-c--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhc
Confidence 345899775 3 5789999988632 2344455556666 999999999999999999997543
No 66
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=90.26 E-value=0.58 Score=48.86 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=43.7
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
..++|..-. ..++|+|.++.+ . .+++-..=.-+++|++.||++|.|...|.+||..
T Consensus 53 ~~~~W~l~~---~k~gIkVytr~~---s-----~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVAS---STTSVTLYTLEQ---D-----GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEEE---cCCCEEEEEecC---C-----CceEEEEEEEecCCHHHHHHHHhCcchhhhhhhc
Confidence 467999665 468999999873 1 2444444445899999999999999999999973
No 67
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.89 E-value=0.84 Score=42.50 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecch
Q 005853 99 HRHTPHQI-QELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144 (673)
Q Consensus 99 trfT~~Ql-~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 144 (673)
++||.++. +.+...+.. . ....++|+++|+++.+|..|.+.
T Consensus 11 r~ys~EfK~~aV~~~~~~-g----~sv~evA~e~gIs~~tl~~W~r~ 52 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEP-G----MTVSLVARQHGVAASQLFLWRKQ 52 (121)
T ss_pred CCCCHHHHHHHHHHHHcC-C----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 45777654 444444442 2 23567899999999999999543
No 68
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=89.75 E-value=0.86 Score=46.50 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcCC
Q 005853 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
.++|.... .++++.|.++++.+..|. -.++.--+|.+|+.||+||.|...|.+||-.+..
T Consensus 21 ~~gWk~~k---~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~ 80 (204)
T cd08904 21 TSGWKVVK---TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV 80 (204)
T ss_pred ccCCeEEe---cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc
Confidence 48999775 348899999988654542 2456667899999999999999999999975433
No 69
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=89.24 E-value=0.82 Score=46.68 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=44.4
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcCC
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
-...+|. +. ...++|+|.++.. +|...|.. + .+. +++|++.|+++|.|...|.+||.....
T Consensus 19 ~~~~gW~-l~--~~~~gI~Vy~k~~---~~~~~~~~-g-e~~--v~as~~~v~~ll~D~~~r~~Wd~~~~~ 79 (205)
T cd08874 19 QATAGWS-YQ--CLEKDVVIYYKVF---NGTYHGFL-G-AGV--IKAPLATVWKAVKDPRTRFLYDTMIKT 79 (205)
T ss_pred hccCCcE-EE--ecCCCEEEEEecC---CCCcceEE-E-EEE--EcCCHHHHHHHHhCcchhhhhHHhhhh
Confidence 4567995 54 2368999999874 34444444 3 333 499999999999999999999975544
No 70
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=88.55 E-value=0.89 Score=47.51 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=47.7
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcC
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSN 628 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~ 628 (673)
...++|..-. ..++|+|.++. |.. +++-..-+-+++|++.||++|.|...|.+||....
T Consensus 53 a~~~~W~l~~---dkdgIkVytr~-----~s~---~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~ 111 (236)
T cd08914 53 AAKSGWEVTS---TVEKIKIYTLE-----EHD---VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFL 111 (236)
T ss_pred cccCCCEEEE---ccCCEEEEEec-----CCC---cEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhc
Confidence 3468999665 46899999984 221 57888888889999999999999999999997543
No 71
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=86.93 E-value=1.3 Score=44.99 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhhhc
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
-.+.+|.... . .++|+|-.|.. +|. .+.--++...++ ++++.++++|.|...|.+||..+
T Consensus 22 ~~~~~W~l~~-~--~~~i~Vy~r~~---~~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~ 82 (207)
T cd08910 22 LDGAAWELLV-E--SSGISIYRLLD---EQS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV 82 (207)
T ss_pred CCCCCeEEEE-e--cCCeEEEEecc---CCC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 4446799876 3 57899998875 222 233567777889 89999999999999999999753
No 72
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=86.93 E-value=3.7 Score=42.39 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=76.7
Q ss_pred EechhHHHHHhcCh---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecC
Q 005853 354 IINSSALIETMMDA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIE 430 (673)
Q Consensus 354 ~~~~~~LVe~lmD~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~ 430 (673)
.+.|..+-|.|+|. .+|=.+ |.+-.||+.. .. .|+ .++|-+.+.|.|+- .||+-++|---+.++
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d-~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~ 129 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEED-PV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDE 129 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeec-CC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCC
Confidence 35688899999996 599888 4444444444 21 232 78999999998876 599999988777776
Q ss_pred ceEEEEEEeccCCCCCCCCCccccccccCCcceEe-----eCCCC-cceEEEEEe
Q 005853 431 GVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQ-----DVPNN-YSKVTWIEH 479 (673)
Q Consensus 431 g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq-----~~~nG-~skVtwVeH 479 (673)
..-+||-.|+....- +.....+|..-.=||.+|+ +-++| .|-++|++|
T Consensus 130 k~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 130 KDYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred ceEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 777787777763211 1112457888888999999 55555 344555544
No 73
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.63 E-value=1.3 Score=45.33 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=43.2
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhh
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~ 625 (673)
....+|.... ..++|.|.++|..+ |.|.-++.| |+=+| +|.+.|+|.|+| |..||.
T Consensus 24 ek~kgW~~~~---~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~ 80 (205)
T cd08907 24 ERFKGWHSAP---GPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDE 80 (205)
T ss_pred hccCCceeec---CCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhH
Confidence 4456899775 36789999999744 667556644 44558 999999999999 999994
No 74
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=86.38 E-value=5.2 Score=38.38 Aligned_cols=140 Identities=10% Similarity=0.149 Sum_probs=71.5
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+-+|.-.+..+-+++-|..+|-+.||.++. ++|+ +.|..+ . .....++...+ ..+.-|.=|.+.
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~----~~~l-~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~~-- 69 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAE----AEVL-EEDGDT----V--RFRLTMHPDAN--GTVWSWVSERTL-- 69 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEE----EEEE-EecCCe----E--EEEEEEEeccC--CEEEEEEEEEEe--
Confidence 4566777899999999999999999988655 5666 543322 1 11111122222 122223234332
Q ss_pred cCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHH
Q 005853 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (673)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla 508 (673)
....|-|.=..+.. .+ ...+=-...+++.++| |+|++..+.+...-. .+.-+++....--.-..=++
T Consensus 70 ~~~~~~i~~~~~~~---~p-------~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 136 (146)
T cd08860 70 DPVNRTVRARRVET---GP-------FAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMA 136 (146)
T ss_pred cCCCcEEEEEEecC---CC-------cceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHH
Confidence 33334333112111 11 1122223446888887 999999998865311 22222222222222334466
Q ss_pred HHHHHHHH
Q 005853 509 TLQRQCEC 516 (673)
Q Consensus 509 ~LqR~cer 516 (673)
+|.+.+|+
T Consensus 137 ~Lk~~aE~ 144 (146)
T cd08860 137 RIKKKIEA 144 (146)
T ss_pred HHHHHhhh
Confidence 66666664
No 75
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=86.18 E-value=1.2 Score=45.10 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCceeeecCCCCcc----eEEEEecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhhhcCC
Q 005853 562 RKWDKLCVGNVGED----VRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 562 ~~W~~l~~~~~~~d----vrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
++|.... . .++ |+|-.|+. +|. | +.--++...++ +||+.|+++|.|...|.+||.....
T Consensus 22 ~~W~~~~-~--k~~~~~~i~vy~r~~---~~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~ 85 (209)
T cd08870 22 QAWQQVM-D--KSTPDMSYQAWRRKP---KGT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIE 85 (209)
T ss_pred CcceEhh-h--ccCCCceEEEEeccc---CCC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheee
Confidence 6899876 3 344 88877765 222 2 23455666776 8999999999999999999965433
No 76
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=85.89 E-value=4.8 Score=41.24 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=64.0
Q ss_pred eeeeeeeehhcccccccceeeEEEEe-eeeecC-ceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCC---Ccce
Q 005853 399 ALQVMVAEFQVLSPLVPVRQAKFLRF-CKQHIE-GVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPN---NYSK 473 (673)
Q Consensus 399 ~lqlm~aEl~~~SPLvp~Re~~flRy-ckq~~~-g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~n---G~sk 473 (673)
...+.|.+..+|-| +..|+|..+.. +...+. ..++|+.++++...-......++|.+ -=||..|+..|. +-..
T Consensus 90 ~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~ 167 (208)
T cd08864 90 VTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSNK 167 (208)
T ss_pred eEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcCC
Confidence 56788888888888 89999999999 666652 67899999987542110112578877 679999998875 4789
Q ss_pred EEEEEeeeecccc-ccc
Q 005853 474 VTWIEHAEYDESI-VHH 489 (673)
Q Consensus 474 VtwVeH~e~d~~~-v~~ 489 (673)
|+|+==...|+.. ||.
T Consensus 168 vew~maT~sDpGG~IP~ 184 (208)
T cd08864 168 VEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEeeCCCCcCcH
Confidence 9999844445553 543
No 77
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=85.56 E-value=1.4 Score=44.83 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCc--ccchhhhhhcCC
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDE--RMRSEWDILSNG 629 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~--~~R~eWd~l~~g 629 (673)
..++|.... ..++|+|.+|++...+|. + .++-.-+|++++.||++|.|. ..|.+||..+..
T Consensus 20 ~~~~W~~~~---~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~ 82 (208)
T cd08903 20 DESGWKTCR---RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD 82 (208)
T ss_pred cccCCEEEE---cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc
Confidence 567899776 247999999987554553 2 445556799999999999864 478999976554
No 78
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=85.01 E-value=1.7 Score=45.56 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=43.7
Q ss_pred CCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 559 SSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 559 s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
...++|..-. ..++|+|.++.. +. +++-++-+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~~---~~~gI~Vyt~~~-----s~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLSS---EKNQVRLYTLEE-----DK---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEEE---ccCCEEEEEEeC-----CC---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 4566899665 258999999653 11 1233555677999999999999999999999754
No 79
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=84.69 E-value=1.9 Score=43.69 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=56.2
Q ss_pred HHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 548 MTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 548 M~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
++..|...+.. .++|.... ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-+.+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~---~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK---ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEec---cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44556666655 67899876 35799999998632 338899999999999999999999999999999764
Q ss_pred C
Q 005853 628 N 628 (673)
Q Consensus 628 ~ 628 (673)
.
T Consensus 79 ~ 79 (215)
T cd08877 79 I 79 (215)
T ss_pred e
Confidence 3
No 80
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=84.58 E-value=0.49 Score=55.64 Aligned_cols=51 Identities=18% Similarity=0.404 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
|+.. ...|..+|..|..|+..+...+|.+.||+.+.||.||+++++.....
T Consensus 564 ~~~p-~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 564 FNHP-TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred cCCc-HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 4433 78899999999999999999999999999999999999998876643
No 81
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.16 E-value=5.7 Score=41.41 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=23.8
Q ss_pred chhhhHHHHH--HHHHHhHHHHHhhHHHHHHHHHHHhhcC
Q 005853 143 QNRRTQMKTQ--MERHENIILRQEHDKLRAENEMLKDAMK 180 (673)
Q Consensus 143 QNRRak~Kr~--~~~~e~~~l~~e~~~l~~en~~l~ea~~ 180 (673)
|+-|-|.|.+ +.+.+-..|..+|++|+.||+.|++...
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444433 3344445677888888888888887654
No 82
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=84.01 E-value=1.7 Score=44.15 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=43.8
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecc-cCChHHHHHHhhCcccchhhhhhcCC
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWL-PMTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wL-pv~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
-..+|.... . .++|+|-.|... |. |+. --++...+ .+|++.+|++|.|...|.+||.....
T Consensus 19 ~~~~W~l~~-~--~~~i~Vy~r~~~---~s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~ 80 (207)
T cd08911 19 EPDGWEPFI-E--KKDMLVWRREHP---GT--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVE 80 (207)
T ss_pred cCCCcEEEE-E--cCceEEEEeccC---CC--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhhee
Confidence 345699876 2 578999888763 22 222 34454445 69999999999999999999965443
No 83
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=83.63 E-value=0.84 Score=36.66 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchh
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNR 145 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNR 145 (673)
||+|+.+|-+|-..+=+.++..+ ...+||+++|++..+|.-|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46778899988887777787775 47889999999999999998774
No 84
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=83.53 E-value=2.2 Score=43.66 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=43.8
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcCC
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
..++|..-. ..+||.|..+++...+|.- - .+---++.-|+.|+||+.+..+|.+||-....
T Consensus 21 ~~~~Wkl~k---~~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~ 81 (202)
T cd08902 21 LEEEWRVAK---KSKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTS 81 (202)
T ss_pred cccCcEEEE---eCCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchhhh
Confidence 667999665 2489999999885545532 1 11111278889999999999999999976544
No 85
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=82.67 E-value=5.1 Score=40.28 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhC--cc
Q 005853 541 MLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRD--ER 618 (673)
Q Consensus 541 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd--~~ 618 (673)
+=++.|.|..-|... ++|.... ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +.
T Consensus 7 ~~~~~~~~~~~~~~~------~~W~~~~---~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~ 71 (206)
T cd08867 7 AEKLANEALQYINDT------DGWKVLK---TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGG 71 (206)
T ss_pred HHHHHHHHHHHhcCc------CCcEEEE---cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCcc
Confidence 334556666555522 7899876 3478999998643211 2 1246666779999999999999 89
Q ss_pred cchhhhhhcCC
Q 005853 619 MRSEWDILSNG 629 (673)
Q Consensus 619 ~R~eWd~l~~g 629 (673)
.|.+||....+
T Consensus 72 ~r~~Wd~~~~~ 82 (206)
T cd08867 72 LRLKWDKSLKH 82 (206)
T ss_pred ccccccccccc
Confidence 99999965433
No 86
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=82.10 E-value=2.9 Score=40.19 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhcC
Q 005853 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILSN 628 (673)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~ 628 (673)
++|..+. . .++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||....
T Consensus 15 ~~W~~~~-~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~ 72 (193)
T cd00177 15 EGWKLVK-E--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFE 72 (193)
T ss_pred CCeEEEE-E--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcce
Confidence 5899886 2 4589998887632 1 133556677779999999999999999999995433
No 87
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=81.91 E-value=20 Score=33.02 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=69.1
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhccccccccee-eEEEEeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQ-AKFLRFCKQ 427 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re-~~flRyckq 427 (673)
++-.|...+..+-++|.|.+.|.+.+|.+. ..+++ ..+ + ++. . ++.. .|. +.+++|+..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~----~~~~l-~~~--~--~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLA----ESRLL-ERN--G--NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCce----EEEEE-EcC--C--CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 456677788899999999999999988855 44555 321 1 121 1 1111 111 222233322
Q ss_pred ecCceEEEEEEeccCCCCCCCCCcccccccc----C--Cc-ceEeeCCC-CcceEEEEEeeeeccccccccccccccccc
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRL----P--SG-FVVQDVPN-NYSKVTWIEHAEYDESIVHHLCRPLLSSGM 499 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~----P--SG-clIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~sg~ 499 (673)
++.++.... +.. ..++++.. + .| .-+++.++ |.++|+|--|++... .+ +-++++.-+
T Consensus 63 ------v~~~~~~~~--~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~---p~~l~~~~~ 127 (144)
T cd08866 63 ------VVLELRERE--EFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FA---PVFLVEFVL 127 (144)
T ss_pred ------EEEEEEEec--CCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CC---CHHHHHHHH
Confidence 122211100 000 00111110 1 12 23578887 789999977777553 22 235555555
Q ss_pred hhhHHHHHHHHHHHHH
Q 005853 500 GFGAPKWVATLQRQCE 515 (673)
Q Consensus 500 afGA~rWla~LqR~ce 515 (673)
-=+.++-++.|.++||
T Consensus 128 ~~~~~~~l~~lr~~ae 143 (144)
T cd08866 128 RQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5556667777777665
No 88
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=81.58 E-value=14 Score=33.61 Aligned_cols=108 Identities=8% Similarity=0.122 Sum_probs=59.0
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeec
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI 429 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~ 429 (673)
+-.+...+.++.+.|.|.+.|.+-+|.+.. ++++ +. +.... +....+ .|+ ..|--...+|..--+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~----~~~~-~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~ 70 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCES----LEKI-GP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDP 70 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchhh----cccc-CC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCC
Confidence 345667788999999999999999998664 5666 31 22221 112222 232 223222345554333
Q ss_pred CceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeec
Q 005853 430 EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (673)
Q Consensus 430 ~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (673)
+..+++....... . .+ ...=--+-+.+. +|.++|||.-+++..
T Consensus 71 ~~~~~~~~~~~~~---~----~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~ 113 (144)
T cd05018 71 PESYTITGEGKGG---A----GF---VKGTARVTLEPD-GGGTRLTYTADAQVG 113 (144)
T ss_pred CcEEEEEEEEcCC---C----ce---EEEEEEEEEEec-CCcEEEEEEEEEEEc
Confidence 4554444221110 0 01 011122346777 667999999999965
No 89
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=79.57 E-value=7.2 Score=39.25 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
..++|.... ..++|+|.+|+..+ +.| +..-++..-++.+|+.||+.|.| .|.+||...
T Consensus 17 ~~~~W~~~~---~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~ 74 (197)
T cd08869 17 KSKGWVSVS---SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDL 74 (197)
T ss_pred ccCCceEEe---cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhh
Confidence 467999665 35799999999632 223 44557788889999999999988 689999643
No 90
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=78.92 E-value=13 Score=34.28 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=73.4
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+..|...+..+.+++-|.+.|.+.+|.+.. .+++ +.+. ++ ..+++.+..|. -.|++. .|++-.
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~----~~vl-~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~- 66 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTA----SRVL-ERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV- 66 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccc----cEEE-EcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-
Confidence 3456667788899999999999999998765 3445 3221 12 22223333332 244443 333321
Q ss_pred cCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHH
Q 005853 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (673)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla 508 (673)
.+. .+ -=.++++. ...+=--..+++.++|.|+|||.-|++..-.-...|..+++ .=..++-|.
T Consensus 67 ~~~-~i-~~~~~~g~-----------~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~----~~~~~~~l~ 129 (138)
T cd07813 67 PPE-SI-EAELVDGP-----------FKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVF----DEVAKKMVD 129 (138)
T ss_pred CCC-EE-EEEecCCC-----------hhhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHH----HHHHHHHHH
Confidence 133 32 11222221 11122345578899999999999999986322222223222 223556666
Q ss_pred HHHHHHHH
Q 005853 509 TLQRQCEC 516 (673)
Q Consensus 509 ~LqR~cer 516 (673)
++.+.|++
T Consensus 130 ~f~~~~~~ 137 (138)
T cd07813 130 AFEKRAKQ 137 (138)
T ss_pred HHHHHHhh
Confidence 67666654
No 91
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=78.92 E-value=15 Score=33.70 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=23.3
Q ss_pred ceeEEechhHHHHHhcChhhHhhhccc
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPC 376 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~ 376 (673)
+.+|...+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456777888999999999999998787
No 92
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=78.90 E-value=6.2 Score=39.78 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHh-hCcccchhhhhhcCC
Q 005853 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM-RDERMRSEWDILSNG 629 (673)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~~~R~eWd~l~~g 629 (673)
..+|.... . ..++|.|.+|.. +| .|-+ ..+...+++||..||++| .|...|.+||..+..
T Consensus 23 ~~~W~l~~-~-~~~~i~i~~r~~---~~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~ 83 (208)
T cd08868 23 DPGWKLEK-N-TTWGDVVYSRNV---PG--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE 83 (208)
T ss_pred CCCceEEE-e-cCCCCEEEEEEc---CC--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc
Confidence 34899776 2 223899999985 33 2333 444556799999999865 588999999976544
No 93
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=78.49 E-value=4.6 Score=38.46 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHh
Q 005853 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRL-GLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKD 177 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L-gLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~e 177 (673)
.+||.+++-.+ .. .+|=++| |++...|-.|=|.||+-.-|-........--++.+.|..+|..|.
T Consensus 22 d~lsDd~Lvsm------------SV-ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~- 87 (135)
T KOG4196|consen 22 DRLSDDELVSM------------SV-RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQ- 87 (135)
T ss_pred CCcCHHHHHHh------------hH-HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45888887665 22 2334444 788888888888888765543333333333333344555555554
Q ss_pred hcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhh
Q 005853 178 AMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (673)
Q Consensus 178 a~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~ 220 (673)
-+..+|+.||++++.|++-...
T Consensus 88 ---------------------qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 88 ---------------------QQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2445788999999988875433
No 94
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=77.62 E-value=7.7 Score=40.38 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=48.8
Q ss_pred ccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEE-EEEEeeccc-CChHHHHHHhhCcccchhhhhhcCC
Q 005853 556 VCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVL-CAATTVWLP-MTRQRLFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 556 v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g 629 (673)
.-+-..++|.... . .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-...
T Consensus 20 ~~~~~~~~W~l~~-~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~ 87 (235)
T cd08872 20 LEDVGADGWQLFA-E--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN 87 (235)
T ss_pred HccCCCCCCEEEE-e--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe
Confidence 3345566899776 3 5789999987632 2 2332 356777789 9999999999999999999975433
No 95
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=75.39 E-value=45 Score=30.10 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=68.3
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeec
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI 429 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~ 429 (673)
+..|...+..+-++|.|.+.|.+-+|.+. .++++ +. + +. . +.+-.|....+++ ..+++. .+
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~~----~~~~~-~~---~---~~-~-----~~~~~~~g~~~~~-~~~v~~-~~ 65 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHVE----SVEQL-DD---T---RS-H-----WKAKGPAGLSVEW-DAEITE-QV 65 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhhc----EEEEc-CC---C---ce-E-----EEEecCCCCcEEE-EEEEec-cC
Confidence 34556678899999999999999998643 34555 31 1 11 1 1111232333443 335544 33
Q ss_pred CceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHH
Q 005853 430 EGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVAT 509 (673)
Q Consensus 430 ~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~ 509 (673)
.+..++.. ..++.. . .....+ +++.++|.++||+--|.+.+....-.++-+++..-+-=..+.+|..
T Consensus 66 ~~~~i~~~-~~~~~~-~-----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (139)
T cd07817 66 PNERIAWR-SVEGAD-P-----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRR 132 (139)
T ss_pred CCCEEEEE-ECCCCC-C-----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHH
Confidence 44433222 222211 0 011112 4677777899999999887643322233333333322334445555
Q ss_pred HHHHHH
Q 005853 510 LQRQCE 515 (673)
Q Consensus 510 LqR~ce 515 (673)
|.+++|
T Consensus 133 lk~~aE 138 (139)
T cd07817 133 FKQLVE 138 (139)
T ss_pred HHHHhh
Confidence 544443
No 96
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=74.11 E-value=29 Score=31.37 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=60.8
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+..|...+.++.+.|.|.+.|.+.+|.+. .++++ ..+.. |.-...+ +.+- ..+.++-+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~----~~~~~-~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~ 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVK----SVEVL-LRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceE----EEEEe-ccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC
Confidence 456677889999999999999999999844 45555 43332 2211222 2221 2244555556665432
Q ss_pred cCce--EEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeecc
Q 005853 429 IEGV--WAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDE 484 (673)
Q Consensus 429 ~~g~--w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~ 484 (673)
... |-+.+. . ++.... .-.-+++.++ .|+|||.-+++..-
T Consensus 73 -~~~i~~~~~~~----~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 -AGSVSWTLVEG----E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred -CCcEEEEEecc----c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 222 222111 0 011111 1255788877 59999999998743
No 97
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.56 E-value=7.5 Score=33.48 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhh
Q 005853 152 QMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICIL 221 (673)
Q Consensus 152 ~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~ 221 (673)
++.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.......
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~----------------------e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE----------------------ENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566788888888888888774 3346889999999987644333
No 98
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.53 E-value=6.8 Score=30.73 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHH
Q 005853 153 MERHENIILRQEHDKLRAENEMLK 176 (673)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ 176 (673)
|.+.++..|++.++.|.+++.+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999988865554
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.29 E-value=5.9 Score=42.41 Aligned_cols=40 Identities=33% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 159 IILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 159 ~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
..+++||++|+.++..+++++. ...+.++.||++||+.|.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~------------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLE------------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 4466777777777766654442 223348889999988765
No 100
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=67.58 E-value=18 Score=36.94 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=41.3
Q ss_pred CCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHH-HhhCcccchhhhhh
Q 005853 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFD-FMRDERMRSEWDIL 626 (673)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~-fLrd~~~R~eWd~l 626 (673)
..+|..-. ...++|+|.+++. ++. | .+-+.-.-+++|++.||+ .|.|...|.+||.-
T Consensus 24 ~~~W~l~~--~~~~gi~V~s~~~---~~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 24 EENWKFEK--NNDNGDTVYTLEV---PFH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred ccCCEEEE--ecCCCCEEEEecc---CCC--C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 35899653 2247899999765 222 2 233667777999999985 78999999999953
No 101
>PRK10724 hypothetical protein; Provisional
Probab=66.75 E-value=72 Score=31.18 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=77.8
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq 427 (673)
+.+.+|.-.+..+.+.+.|.+.|-+.+|... ..+|+ .... ++ +.+++.+--.-+ ...|..-++| .
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~----~s~vl-~~~~----~~----~~a~l~v~~~g~-~~~f~srv~~-~ 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCT----GSRVL-ESTP----GQ----MTAAVDVSKAGI-SKTFTTRNQL-T 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccC----eEEEE-EecC----CE----EEEEEEEeeCCc-cEEEEEEEEe-c
Confidence 4467888899999999999999998877654 44445 3211 12 467765543332 3333333333 2
Q ss_pred ecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHH
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWl 507 (673)
.++ .+.+ ..+++ + .+.+=.-.-+++.++|.|+|+.--+.|+... |+.+++...+--.|++-+
T Consensus 83 -~~~-~I~~-~~~~G----p-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~----l~~~~~~~~~~~~~~~mv 144 (158)
T PRK10724 83 -SNQ-SILM-QLVDG----P-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK----LIELAFGRVFKELASNMV 144 (158)
T ss_pred -CCC-EEEE-EecCC----C-------hhhccceEEEEECCCCCEEEEEEEEEEEchH----HHHHHHHHHHHHHHHHHH
Confidence 333 3322 22222 1 2334444457788877899999988886643 333344333333455556
Q ss_pred HHHHHHHHHH
Q 005853 508 ATLQRQCECL 517 (673)
Q Consensus 508 a~LqR~cerl 517 (673)
.+..+-|+.+
T Consensus 145 ~AF~~Ra~~~ 154 (158)
T PRK10724 145 QAFTVRAKEV 154 (158)
T ss_pred HHHHHHHHHH
Confidence 5555445443
No 102
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=65.32 E-value=59 Score=29.09 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred eeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecC
Q 005853 351 GMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIE 430 (673)
Q Consensus 351 ~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~ 430 (673)
..|...+..+-+.|.|.+.|.+-+|.+ ..+++. ..+. ..|+...++... . +.+. -+|.. +++
T Consensus 7 ~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~-~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~ 68 (140)
T cd07821 7 VTIDAPADKVWALLSDFGGLHKWHPAV----ASCELE-GGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDD 68 (140)
T ss_pred EEECCCHHHHHHHHhCcCchhhhccCc----ceEEee-cCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCc
Confidence 456777889999999999999887753 455555 4322 134432222110 0 1111 11111 112
Q ss_pred ceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHH
Q 005853 431 GVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATL 510 (673)
Q Consensus 431 g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~L 510 (673)
+.-.|. ..+... +. + +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..++.|
T Consensus 69 ~~~~i~-~~~~~~-~~----~---~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 69 AERRYS-YRIVEG-PL----P---VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred cCCEEE-EEecCC-CC----C---cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHH
Confidence 100111 111110 00 1 1111123557788887899999999887654 333444333333344455555
Q ss_pred HHHH
Q 005853 511 QRQC 514 (673)
Q Consensus 511 qR~c 514 (673)
.++|
T Consensus 136 ~~~~ 139 (140)
T cd07821 136 KAAL 139 (140)
T ss_pred HHhh
Confidence 5554
No 103
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=64.30 E-value=12 Score=38.21 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=41.0
Q ss_pred CceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 563 KWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 563 ~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
+|..+. ..+.+.+..+|. .+|.| +.--++++=+|.+|..|...|-|+ |.+||.-
T Consensus 28 ~w~~~~---~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~ 81 (204)
T cd08908 28 GWVSYS---TSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVD 81 (204)
T ss_pred CCcccC---CCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHH
Confidence 677775 357799999986 35655 566677888898888888777775 9999964
No 104
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=63.77 E-value=89 Score=27.80 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=28.2
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCC
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPS 391 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g 391 (673)
+..|...+..+-+.|.|.++|.+-.|.+. .++++ +.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~----~~~~~-~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVV----EVEKI-TDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCce----EEEEc-CCC
Confidence 34566678889999999999999988864 45666 544
No 105
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=61.58 E-value=49 Score=30.64 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=23.2
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccc
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCM 377 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~i 377 (673)
.+.+|...+..+-+++-|...|-+-.|..
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34567888899999999999998876644
No 106
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.83 E-value=11 Score=39.76 Aligned_cols=41 Identities=39% Similarity=0.512 Sum_probs=26.6
Q ss_pred HhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 157 ENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 157 e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
....+++||+.|++||..++..+ .+.+.++.||++||+-|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~-------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL-------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 34456666777777766666554 344467788888887654
No 107
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=59.08 E-value=1.1 Score=37.57 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 005853 96 KKYHRHTPHQIQELESFF-KECPHPDEKQRSELSRRLGLESKQIKFWF 142 (673)
Q Consensus 96 r~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 142 (673)
++|++||+++...+=..+ .. .....++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~~-----g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLES-----GESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHHH-----HCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCceEeeecccccccccccHHH
Confidence 456779998776665555 32 2457889999999999988884
No 108
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.02 E-value=23 Score=31.06 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh----hhhhhhhh
Q 005853 150 KTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG----RICILANK 224 (673)
Q Consensus 150 Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~----r~~~~~~~ 224 (673)
|.++.-..-..|+-+.+.|+.+|..+.+..... . .....|..||.+||+|.. |+++++.+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~--------------~-~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA--------------Q-HQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555677778888888888887765321 1 234469999999999975 45554443
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.28 E-value=32 Score=42.21 Aligned_cols=55 Identities=38% Similarity=0.559 Sum_probs=38.9
Q ss_pred HHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhhh
Q 005853 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILA 222 (673)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~~ 222 (673)
++..++.|..+.+-|+++|.+. |....+..+ ++-.+|..+|+|||+-|-|++.+.
T Consensus 337 lkEr~deletdlEILKaEmeek------G~~~~~~ss-~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEK------GSDGQAASS-YQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCcccch-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555666666778888765 333334445 899999999999999998887663
No 110
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=53.16 E-value=20 Score=37.18 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=41.1
Q ss_pred CCCCCCceeeecCCCCcceEEEE-ecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhhh
Q 005853 558 ASSVRKWDKLCVGNVGEDVRVLT-RKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 558 ~s~~~~W~~l~~~~~~~dvrv~~-r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l 626 (673)
+-.+.+|..+- . ..+++|.. |.- +.| | =...|- .-+. ++|..|+||+-|..-|.+||.+
T Consensus 25 ~~~~~~We~~~-~--k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~ 85 (219)
T KOG2761|consen 25 CDAGQGWELVM-D--KSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDM 85 (219)
T ss_pred cCcccchhhhc-c--cCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHH
Confidence 56677999876 2 45677766 332 233 3 234333 3356 9999999999999999999964
No 111
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=51.93 E-value=25 Score=31.40 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhhh
Q 005853 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILA 222 (673)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~~ 222 (673)
.+.+++..|..|.+.|++...+ . .+.-+...||-+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~---------------n-Pevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEH---------------N-PEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---------------C-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888877743 1 566688999999999999987764
No 112
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=51.88 E-value=92 Score=35.75 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHH-H-hcCCCCCHHHHHHHHHHhCCCcceEEeecchhh-hHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 005853 99 HRHTPHQIQELESF-F-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRR-TQMKTQMERHENIILRQEHDKLRAENEML 175 (673)
Q Consensus 99 trfT~~Ql~~LE~~-F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR-ak~Kr~~~~~e~~~l~~e~~~l~~en~~l 175 (673)
-++|.+....|.+. | .-..+|-.+.-+++-++. +.=.+|+| ++.+|++++.--..+........+||++|
T Consensus 219 L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv-------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL 291 (472)
T KOG0709|consen 219 LVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV-------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQEL 291 (472)
T ss_pred eeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH-------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHH
Confidence 45788888888776 3 334566666555555444 11122333 22222222222333444445555666666
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhhhhh
Q 005853 176 KDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILANK 224 (673)
Q Consensus 176 ~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~~~~ 224 (673)
+ ...++|..+|..|-++|.++.++...
T Consensus 292 ~----------------------kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 292 Q----------------------KKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred H----------------------HHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 5 34557889999999999988776543
No 113
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=51.64 E-value=19 Score=45.73 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
..+-.+++++.-|...|-.+|+...+|.-.+++.++.-|++..|.+-.|||++++++.+...
T Consensus 443 e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~ 504 (1406)
T KOG1146|consen 443 EPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP 504 (1406)
T ss_pred hhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc
Confidence 34556778999999999999999999999999999999999999999999998888875443
No 114
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=48.17 E-value=34 Score=39.69 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=16.6
Q ss_pred hccCCCCeeecCCCCccccChHHHhhh
Q 005853 304 AEADSPLWIKSLDGGRDVFNQEEYMRT 330 (673)
Q Consensus 304 a~~~~plWi~~~~~~~e~Ln~~eY~~~ 330 (673)
.+..++|.+.+.+. +--.|.-||.+.
T Consensus 438 lne~p~L~~~s~dc-r~~~n~te~~~l 463 (655)
T KOG4343|consen 438 LNEEPLLYIPSPDC-RPLINTTESLRL 463 (655)
T ss_pred ccCCCceeccCccc-hhhhhhhhhhhh
Confidence 36677788877543 336677777654
No 115
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=45.00 E-value=33 Score=30.74 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=25.9
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEe
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVL 387 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi 387 (673)
+..|...+.++-+.|.|...|.+-+|.+. .++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~~----~~~~~ 40 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGVK----SVELL 40 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTEE----EEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhceE----EEEEc
Confidence 44677889999999999999998877554 45556
No 116
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=44.71 E-value=94 Score=31.55 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhh-Cccc
Q 005853 541 MLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMR-DERM 619 (673)
Q Consensus 541 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLr-d~~~ 619 (673)
-.++++.....|-.-. ....+|.... .+.++++|.++.. ++. | --.+.-.-+|+|++.||++|. |-..
T Consensus 6 y~~~~~~~~~~~~~~~--~~~~~W~~~~--~~~~gi~v~s~~~---~~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e~ 74 (209)
T cd08905 6 YIKQGEEALQKSLSIL--QDQEGWKTEI--VAENGDKVLSKVV---PDI--G--KVFRLEVVVDQPLDNLYSELVDRMEQ 74 (209)
T ss_pred HHHHHHHHHHHHHHHh--ccccCCEEEE--ecCCCCEEEEEEc---CCC--C--cEEEEEEEecCCHHHHHHHHHhchhh
Confidence 3445555555554444 2456899774 2356788888665 222 1 233455567999999996666 5699
Q ss_pred chhhhhhcCC
Q 005853 620 RSEWDILSNG 629 (673)
Q Consensus 620 R~eWd~l~~g 629 (673)
+.+|+..+..
T Consensus 75 ~~~W~~~~~~ 84 (209)
T cd08905 75 MGEWNPNVKE 84 (209)
T ss_pred hceecccchH
Confidence 9999965543
No 117
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=43.41 E-value=22 Score=35.46 Aligned_cols=19 Identities=53% Similarity=0.646 Sum_probs=5.3
Q ss_pred hhhhhhhhhhHHHHHHhhh
Q 005853 200 ELQQLRIENARLKDELGRI 218 (673)
Q Consensus 200 e~q~L~~eNa~Lk~El~r~ 218 (673)
|+..|+++++|||||+..+
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666666666665543
No 118
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=42.52 E-value=53 Score=32.46 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=42.1
Q ss_pred CCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHH-HHHHhhCcccchhhhhhcCC
Q 005853 561 VRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQR-LFDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 561 ~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~-vf~fLrd~~~R~eWd~l~~g 629 (673)
.++|.... + +.+++.+..+.. +| + ..+-..++...++.+++. +.++|.|.+.|.+||.....
T Consensus 18 ~~~W~~~~-~-~~~~~~~~~~~~---~~-~-~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 18 EPGWVLSS-E-NENGDEVRSILS---PG-R-SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred CCccEEcc-c-cCCcceEEEEcc---CC-C-CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 46799775 3 234454445443 22 0 135678888999988885 66899999999999976543
No 119
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=42.16 E-value=13 Score=34.95 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=23.5
Q ss_pred EeecccCChHHHHHHhhCcccchhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
-++.++.||++||+||.|......|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999888885
No 120
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.54 E-value=29 Score=39.82 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHhhc
Q 005853 152 QMERHENIILRQEHDKLRAENEMLKDAM 179 (673)
Q Consensus 152 ~~~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (673)
+....+|..+++||++|+.....+.+.+
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3345555566666666655444443333
No 121
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=41.54 E-value=28 Score=28.24 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhCCCcce
Q 005853 101 HTPHQIQELESFFKECP--HPDEKQRSELSRRLGLESKQ 137 (673)
Q Consensus 101 fT~~Ql~~LE~~F~~~~--~Ps~~~R~~LA~~LgLs~rQ 137 (673)
+|+.|.+.|...|+.-= +|-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 58899999999997653 45556668999999998743
No 122
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.17 E-value=30 Score=37.82 Aligned_cols=20 Identities=50% Similarity=0.657 Sum_probs=12.0
Q ss_pred HhHHHHHhhHHHHHHHHHHH
Q 005853 157 ENIILRQEHDKLRAENEMLK 176 (673)
Q Consensus 157 e~~~l~~e~~~l~~en~~l~ 176 (673)
++..|++||++|+.||..|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk 52 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLK 52 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHH
Confidence 44556666666666666665
No 123
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.68 E-value=22 Score=32.18 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
....|+.++.||+.||++|.|.....+|.-.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~ 33 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPK 33 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcc
Confidence 3467889999999999999999999999854
No 124
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.56 E-value=19 Score=32.26 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
..++-++.||+.||++|.|-....+|.-
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 125
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=39.74 E-value=57 Score=33.50 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=36.5
Q ss_pred CCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
.+|..+. ..+++.+..+|.. +|.|.- --++++=+|.+|..|+..+-+ .|.+||.
T Consensus 27 k~w~~~~---~~~~~e~~ykK~~--d~~~lk---~~r~~~ei~~~p~~VL~~vl~--~R~~WD~ 80 (205)
T cd08909 27 KGWISCS---SSDNTELAYKKVG--DGNPLR---LWKVSVEVEAPPSVVLNRVLR--ERHLWDE 80 (205)
T ss_pred cCCcccC---CcCCeEEEEecCC--CCCceE---EEEEEEEeCCCHHHHHHHHHh--hHhhHHh
Confidence 4777765 2577888888864 455533 345678889777666555544 5999995
No 126
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.19 E-value=2.7e+02 Score=25.87 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=60.4
Q ss_pred eEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCc
Q 005853 352 MVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEG 431 (673)
Q Consensus 352 ~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g 431 (673)
.|...+.++-+++.|.+.|-+-.|.+ +.++++ +.+...+.+...+ +... ...|.+.-+..++...-...
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v----~~~~~~-~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~ 76 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGV----ERVVEL-EPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLS 76 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhce----EEEEEc-cCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCc
Confidence 45567889999999999999988864 555566 5221111122222 1111 11222222333444433444
Q ss_pred eEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccc---ccccccccccc
Q 005853 432 VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES---IVHHLCRPLLS 496 (673)
Q Consensus 432 ~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~l~rpl~~ 496 (673)
.+++. . ++... ...+ +-|++.++ +|+||+-.+++..-- ..+.++.+++.
T Consensus 77 ~~~~~-~--~g~~~-----~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~ 128 (146)
T cd07824 77 LLEVR-A--SGDLE-----GVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFR 128 (146)
T ss_pred EEEEE-E--EEeee-----EEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHH
Confidence 55442 2 21100 0011 23666555 499999888887542 24455555553
No 127
>smart00340 HALZ homeobox associated leucin zipper.
Probab=39.07 E-value=23 Score=27.56 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=15.1
Q ss_pred hhhhhhhHHHHHHhhhhhh
Q 005853 203 QLRIENARLKDELGRICIL 221 (673)
Q Consensus 203 ~L~~eNa~Lk~El~r~~~~ 221 (673)
.|..||.||+.|++.+.++
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677899999999888764
No 128
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=38.39 E-value=32 Score=30.90 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=24.1
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
...++-+++||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 34677889999999999999999999974
No 129
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.48 E-value=1.6e+02 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=23.5
Q ss_pred ceeEEechhHHHHHhcChhhHhhhccccc
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMI 378 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV 378 (673)
+..|...+..+-+.|.|...|...+|.+.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~~ 32 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGLE 32 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCcccc
Confidence 44566678899999999999999888743
No 130
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.96 E-value=68 Score=25.21 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=23.0
Q ss_pred HHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhh
Q 005853 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (673)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~ 220 (673)
+...++.|++.-..|+. +-..|..||+.|+.|+..+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~----------------------~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKA----------------------EYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666552 233467777777777766554
No 131
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.77 E-value=63 Score=34.75 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 155 RHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 155 ~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
-.+...+..+|+.|+.++..+.+.. .+.+.|+.||.+||+.|.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~-------------------~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL-------------------EEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhC
Confidence 3444455556666666655555433 345567777887777654
No 132
>smart00338 BRLZ basic region leucin zipper.
Probab=36.54 E-value=1.1e+02 Score=25.12 Aligned_cols=40 Identities=40% Similarity=0.519 Sum_probs=26.8
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHH
Q 005853 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDEL 215 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El 215 (673)
+......|..+...|..+|..|...+ ..|..|+..|++++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~----------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEI----------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHh
Confidence 34455667777777888877777433 35777777777765
No 133
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=36.42 E-value=36 Score=37.62 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 156 HENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 156 ~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
.....+++||+.|+.||..|++++ .+.+.++.||++|+.-+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l-------------------~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERL-------------------KSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhc
Confidence 344566777777777777776655 233446677887775543
No 134
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.39 E-value=44 Score=29.93 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.4
Q ss_pred ceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 462 FVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 462 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
+.+.+.+.|.|+|+|.+... .....++..++...+.=+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767789998864221 1122345556667777778888888888876
No 135
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.93 E-value=29 Score=31.36 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.4
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
..++-++.|++.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 136
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.80 E-value=81 Score=27.24 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh----hhhhhhhh
Q 005853 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG----RICILANK 224 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~----r~~~~~~~ 224 (673)
.-..-..++-+.+.|+.+|..+.+...+. . -...-|..||..||+|-. |+++++.|
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~--------------q-~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNA--------------Q-HQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHH--------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344556667777777777666544210 0 223358899999999964 55555544
No 137
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=34.69 E-value=2.9e+02 Score=24.68 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=31.6
Q ss_pred eEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 463 VVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 463 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
-+++.++ .++|+|..+....... -+.+..+..-|..+.+..|+.+||
T Consensus 92 ~~~~~~~-~T~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 92 TLEETGG-GTRLTLTHSGFPEEDA-----EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEEECCC-CEEEEEEEEccChHhH-----HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 3677774 5999998766543211 233555666678888888988887
No 138
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=34.50 E-value=31 Score=30.89 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=24.7
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
..+.-+++|++.||++|.|.....+|.-
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~~ 31 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWHP 31 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhcc
Confidence 3567789999999999999999999973
No 139
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.46 E-value=81 Score=33.02 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhh
Q 005853 148 QMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRI 218 (673)
Q Consensus 148 k~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~ 218 (673)
|.|-+....++..|..+++.+.++-.++++.++ .|+.||++|.+++.++
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk----------------------~le~E~s~LeE~~~~l 189 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLK----------------------RLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhc
Confidence 334445555666677777777777666666553 4778888887776654
No 140
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.15 E-value=27 Score=32.12 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=26.1
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
.+++.++.||+.||+.|.|-....+|.-.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~ 30 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPN 30 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcC
Confidence 46889999999999999999999999843
No 141
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=33.85 E-value=31 Score=31.12 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=26.2
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
+...++-+++||+.||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999973
No 142
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=33.78 E-value=38 Score=32.84 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
..+|+.|.+.|+..++ . ....++|+.||++...|+.|-++.+.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999988432 2 235689999999999999887765555443
No 143
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.54 E-value=1.6e+02 Score=24.20 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=14.5
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHh
Q 005853 154 ERHENIILRQEHDKLRAENEMLKD 177 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~e 177 (673)
+......|....+.|..+|..|+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666777777666653
No 144
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.36 E-value=27 Score=32.49 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=25.5
Q ss_pred EEEeecccCChHHHHHHhhCcccchhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
|.+++.++.||++||+.|-|+.+..+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 145
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=33.26 E-value=23 Score=27.39 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF 142 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 142 (673)
.+++.|...|...|... ..-.++|+.+|++...|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 47889999999999332 336789999999998877553
No 146
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.14 E-value=23 Score=32.12 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=24.4
Q ss_pred EeecccCChHHHHHHhhCcccchhhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
.++-++.||+.||+||-|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999983
No 147
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=32.64 E-value=14 Score=27.43 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhh
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 146 (673)
.+++.|...++..|... ..-.++|+++|++...|+.|.+.-+
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888888887433 2356789999999999988765443
No 148
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.81 E-value=34 Score=31.39 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred EeecccCChHHHHHHhhCcccchhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
.+.-+..||++||++|-|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999997
No 149
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.28 E-value=1e+02 Score=35.21 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhccCCCCeeec
Q 005853 293 ALTAMDELIKMAEADSPLWIKS 314 (673)
Q Consensus 293 A~~Am~El~~la~~~~plWi~~ 314 (673)
|..||.|+..+.+..---|.+.
T Consensus 402 ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 402 AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999988887777778664
No 150
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=30.83 E-value=30 Score=31.23 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=24.7
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
..|+-++.||+.||++|.|..+.++|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577789999999999999999999963
No 151
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.22 E-value=40 Score=31.21 Aligned_cols=31 Identities=13% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
...|+-++.||++||+++.|.....+|.-.+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 4567778999999999999999999998643
No 152
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.32 E-value=39 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.532 Sum_probs=23.7
Q ss_pred EeecccCChHHHHHHhhCcccchhhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999974
No 153
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=27.80 E-value=3.3e+02 Score=24.21 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhh
Q 005853 146 RTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICI 220 (673)
Q Consensus 146 Rak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~ 220 (673)
..+.++...+++-..|+.....=..-+.+|..++....++-+..|.. .. ...+.|-.|-|.|..|+.++-.
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~---lp-~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSS---LP-KKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccc---CC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888888998888776655444332 22 4556788888888888766543
No 154
>PRK00118 putative DNA-binding protein; Validated
Probab=25.81 E-value=1.2e+02 Score=27.91 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
+++.|...+...|... ..-.++|+.+|+++.-|+.|...-|.+.|..
T Consensus 18 L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~ 64 (104)
T PRK00118 18 LTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLEDY 64 (104)
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 5677777776666543 2356799999999999998887666665543
No 155
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=25.79 E-value=58 Score=33.10 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCcc
Q 005853 100 RHTPHQIQELESFFKEC--PHPDEKQRSELSRRLGLESK 136 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~--~~Ps~~~R~~LA~~LgLs~r 136 (673)
-+|..|++.|...|+.- -+|-...-.+||+++|+++.
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISks 193 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKS 193 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHH
Confidence 59999999999999764 34555556899999999984
No 156
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.73 E-value=55 Score=29.32 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=24.0
Q ss_pred EeecccCChHHHHHHhhCcccchhhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
.+.-++.||+.||++|.|..+..+|.-
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccCh
Confidence 466688999999999999999999974
No 157
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.44 E-value=1.3e+02 Score=32.56 Aligned_cols=29 Identities=38% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHhhc
Q 005853 151 TQMERHENIILRQEHDKLRAENEMLKDAM 179 (673)
Q Consensus 151 r~~~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (673)
|+++|.+...+..|.+-|..+|++|++..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777788888888888887544
No 158
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.29 E-value=1.9e+02 Score=31.09 Aligned_cols=46 Identities=30% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhh-hhhhhhhhHHHHHHhhhhhhhh
Q 005853 159 IILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYEL-QQLRIENARLKDELGRICILAN 223 (673)
Q Consensus 159 ~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~-q~L~~eNa~Lk~El~r~~~~~~ 223 (673)
...-.....+.+||++|++++. +. +++....+.|++|.+|+..++.
T Consensus 62 ~~~~~~~~~l~~EN~~Lr~e~~-------------------~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 62 SENLKDVNNLEYENYKLRQELL-------------------KKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344466778999999998773 22 4555555668999888887653
No 159
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.00 E-value=1.4e+02 Score=34.55 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHhhcC
Q 005853 153 MERHENIILRQEHDKLRAENEMLKDAMK 180 (673)
Q Consensus 153 ~~~~e~~~l~~e~~~l~~en~~l~ea~~ 180 (673)
+.+.+.+.+.++|+.|++||+.|++...
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888899999999998887664
No 160
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=24.90 E-value=63 Score=21.17 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEee
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFW 141 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvW 141 (673)
.++.++...+...|... + ...++|+++|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~-~----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAG-E----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHh
Confidence 36677777776667533 2 4567889999887766555
No 161
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=24.84 E-value=1.8e+02 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 005853 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEML 175 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l 175 (673)
.+..|+.+++..|+.... .+.+|++-.+++-+++..... ...........+.++.+.+......|
T Consensus 35 g~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 35 GYRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPSED-LLEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred CceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999876542 234566666666555544311 12222333334444444444443333
No 162
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.60 E-value=53 Score=32.96 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 181 NPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 181 ~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
+-.||.||++...-+.+ -..+.|+..-..|++|+.
T Consensus 136 ~F~Cp~Cg~~L~~~dn~-~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNS-ELIKELKEQIKELEEELK 170 (178)
T ss_pred CCcCCCCCCCCeecccH-HHHHHHHHHHHHHHHHhc
Confidence 45699999988776655 344455555555555544
No 163
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.43 E-value=51 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=23.1
Q ss_pred EeecccCChHHHHHHhhCcccchhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
.|+.++.|++.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57889999999999999988887776
No 164
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=24.35 E-value=1.7e+02 Score=28.49 Aligned_cols=55 Identities=27% Similarity=0.399 Sum_probs=28.5
Q ss_pred EeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeecCceEEEEEEeccCC
Q 005853 383 TTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDTN 443 (673)
Q Consensus 383 t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~~ 443 (673)
.++|+ +....+..+|.--.+.+++...+- .|..=.|-|+. .+|.|-|+||.++++
T Consensus 86 ~v~~~-~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 86 SVEVL-SEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp EEEE-------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred eEEEE-eccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 45555 444443323444556666665554 33333344443 789999999999976
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.53 E-value=6.1e+02 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=10.2
Q ss_pred HHHhhHHHHHHHHHHHhhc
Q 005853 161 LRQEHDKLRAENEMLKDAM 179 (673)
Q Consensus 161 l~~e~~~l~~en~~l~ea~ 179 (673)
..+....|..+|+.|++++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445666666665544
No 166
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.38 E-value=3.5e+02 Score=32.94 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=3.4
Q ss_pred ccccccc
Q 005853 410 LSPLVPV 416 (673)
Q Consensus 410 ~SPLvp~ 416 (673)
++|..|.
T Consensus 668 ~~~~~~~ 674 (697)
T PF09726_consen 668 ITPPTPH 674 (697)
T ss_pred CCCCCcc
Confidence 4455554
No 167
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.65 E-value=1.2e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=23.1
Q ss_pred EEeecchhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHhhc
Q 005853 138 IKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAM 179 (673)
Q Consensus 138 VkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~ 179 (673)
...||++.-- .+-.+.+++...+++++++++++|+.|++..
T Consensus 17 y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 17 YSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467755411 1122244455566777777777777776544
No 168
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.61 E-value=1.6e+02 Score=25.21 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=14.1
Q ss_pred hhhhhhhhhhhHHHHHHhhh
Q 005853 199 YELQQLRIENARLKDELGRI 218 (673)
Q Consensus 199 ~e~q~L~~eNa~Lk~El~r~ 218 (673)
.+..+|+.||..|++|++..
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35557888888888887653
No 169
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.20 E-value=1.5e+02 Score=33.77 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCCCCceeeeecce---eEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccc
Q 005853 338 KPNGFVTEASRETG---MVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLV 414 (673)
Q Consensus 338 ~~~g~~~EasR~~~---~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLv 414 (673)
.++|....|+=... +=.+|...+-.+|.-.. + =|+.|+-..-- +.-+.|+++-++.+= =+.--.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt---d----kVt~ak~~~~~-~~vVsgs~DRtiK~W-----Dl~k~~ 294 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT---D----KVTAAKFKLSH-SRVVSGSADRTIKLW-----DLQKAY 294 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccc---c----ceeeehhhccc-cceeeccccchhhhh-----hhhhhh
Confidence 45666666664444 77778888888886521 1 12212211100 001235555555431 112244
Q ss_pred cceeeEEEEeeeeecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEE
Q 005853 415 PVRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIE 478 (673)
Q Consensus 415 p~Re~~flRyckq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVe 478 (673)
-+|++.+.=||--+.-+ ++.+-+.+.+ ..+|+|-.=|+=..+.+|-|+ +||=|+
T Consensus 295 C~kt~l~~S~cnDI~~~-----~~~~~SgH~D----kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ 348 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCS-----ISDVISGHFD----KKVRFWDIRSADKTRSVPLGG-RVTSLD 348 (459)
T ss_pred eeccccccccccceEec-----ceeeeecccc----cceEEEeccCCceeeEeecCc-ceeeEe
Confidence 55666666777655443 3333333333 248899888888889999887 888765
No 170
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=21.83 E-value=67 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=25.4
Q ss_pred EEeecccCChHHHHHHhhCcccchhhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
..++.++.||++||+.+.|..+..+|.-
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999964
No 171
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=21.49 E-value=1.1e+02 Score=32.58 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhhhh
Q 005853 144 NRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILAN 223 (673)
Q Consensus 144 NRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~~~ 223 (673)
.+.....+...+..|...+...++-+.....+.... .+.. .|.+.|+.++.+|++|+..++.+..
T Consensus 189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~--------------~~le-ken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRV--------------AELE-KENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHH--------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 005853 224 KF 225 (673)
Q Consensus 224 ~~ 225 (673)
.+
T Consensus 254 ~~ 255 (269)
T KOG3119|consen 254 QL 255 (269)
T ss_pred hh
No 172
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=21.06 E-value=1.8e+02 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhh
Q 005853 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 146 (673)
..+|+++++++.+.-.++ |..-.+..||++.|+++.-|.+-.+--.
T Consensus 84 y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 84 YHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred ccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 569999999999887766 6778899999999999877766554333
No 173
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.00 E-value=67 Score=30.03 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=24.9
Q ss_pred EeecccCChHHHHHHhhCcccchhhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
+++-++.||+.||+.+.|..+..+|.-
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~ 31 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP 31 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh
Confidence 677888999999999999999999985
No 174
>PF15058 Speriolin_N: Speriolin N terminus
Probab=20.58 E-value=1.2e+02 Score=31.14 Aligned_cols=38 Identities=42% Similarity=0.555 Sum_probs=24.1
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhh
Q 005853 159 IILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRIC 219 (673)
Q Consensus 159 ~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~ 219 (673)
.-++..+++|-.||++||+.. +|-.||.+||.=|...+
T Consensus 8 eGlrhqierLv~ENeeLKKlV-----------------------rLirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLV-----------------------RLIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHH-----------------------HHHHHHHHHHHHHHHhh
Confidence 345566667777777777544 36777887777654443
No 175
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=20.43 E-value=47 Score=26.04 Aligned_cols=8 Identities=50% Similarity=1.099 Sum_probs=6.2
Q ss_pred hhHHHHHH
Q 005853 501 FGAPKWVA 508 (673)
Q Consensus 501 fGA~rWla 508 (673)
-||+|||+
T Consensus 38 ~garrwl~ 45 (49)
T PF07151_consen 38 SGARRWLA 45 (49)
T ss_pred hhhhHHHh
Confidence 37899986
No 176
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.10 E-value=2.5e+02 Score=29.31 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhhhhh
Q 005853 155 RHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRICILA 222 (673)
Q Consensus 155 ~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~~~~ 222 (673)
+.-...++...++++.+...+.+ .|-..|+.||.+||-|++|+..-+
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~---------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIER---------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777554432 233358899999999999886544
No 177
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=20.09 E-value=2.6e+02 Score=27.34 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhh
Q 005853 544 LAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 544 La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
|+.+....|.. ......++|.... .....++. +++... +.+ ..+...++..-++.++..+|..|.+... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~-~~~~~~~~--~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYK-DKKNGDVY--YKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEE-EETTTCEE--EEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeE-ccCCCeEE--EEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555555553 3356777999887 33333443 444321 111 1355678888899888877777777444 99
Q ss_pred hhhcC
Q 005853 624 DILSN 628 (673)
Q Consensus 624 d~l~~ 628 (673)
|....
T Consensus 73 d~~~~ 77 (206)
T PF01852_consen 73 DKMCV 77 (206)
T ss_dssp STTEE
T ss_pred ccchh
Confidence 97644
Done!