Query 005853
Match_columns 673
No_of_seqs 374 out of 1842
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4.9E-20 1.7E-24 184.8 16.7 202 285-517 20-229 (231)
2 2dmt_A Homeobox protein BARH-l 99.7 1.4E-18 4.9E-23 148.4 4.9 63 90-152 13-75 (80)
3 2da3_A Alpha-fetoprotein enhan 99.7 1.2E-18 3.9E-23 148.5 3.8 63 91-153 14-76 (80)
4 2kt0_A Nanog, homeobox protein 99.7 1.3E-18 4.3E-23 149.8 3.6 64 90-153 18-81 (84)
5 3a01_A Homeodomain-containing 99.7 1.9E-18 6.5E-23 152.0 4.7 75 91-165 14-88 (93)
6 1nk2_P Homeobox protein VND; h 99.7 5.4E-18 1.8E-22 143.8 5.5 66 91-156 6-71 (77)
7 1wh5_A ZF-HD homeobox family p 99.7 2.6E-18 8.7E-23 147.3 3.3 61 91-151 14-78 (80)
8 2cue_A Paired box protein PAX6 99.7 7.4E-18 2.5E-22 144.0 6.0 65 92-156 5-69 (80)
9 1fjl_A Paired protein; DNA-bin 99.7 5.6E-18 1.9E-22 145.0 4.6 64 91-154 15-78 (81)
10 2dmq_A LIM/homeobox protein LH 99.7 5.3E-18 1.8E-22 144.6 4.3 64 92-155 5-68 (80)
11 2h1k_A IPF-1, pancreatic and d 99.7 6.1E-18 2.1E-22 138.1 3.5 61 93-153 2-62 (63)
12 1wh7_A ZF-HD homeobox family p 99.7 4.2E-18 1.4E-22 146.0 2.6 60 91-151 14-78 (80)
13 2dms_A Homeobox protein OTX2; 99.7 4.9E-18 1.7E-22 145.0 2.8 64 91-154 4-67 (80)
14 2cra_A Homeobox protein HOX-B1 99.7 6E-18 2E-22 140.9 3.1 63 91-153 4-66 (70)
15 2vi6_A Homeobox protein nanog; 99.7 3.2E-18 1.1E-22 139.2 1.4 60 93-152 2-61 (62)
16 2dmu_A Homeobox protein goosec 99.7 1.1E-17 3.9E-22 139.2 4.6 62 92-153 5-66 (70)
17 1puf_A HOX-1.7, homeobox prote 99.7 2.1E-17 7.1E-22 140.2 6.3 65 91-155 10-74 (77)
18 2e1o_A Homeobox protein PRH; D 99.7 1.5E-17 5.3E-22 138.4 5.0 62 92-153 5-66 (70)
19 2hdd_A Protein (engrailed home 99.7 9E-18 3.1E-22 136.1 2.9 58 94-151 3-60 (61)
20 2da2_A Alpha-fetoprotein enhan 99.7 1.1E-17 3.8E-22 139.1 3.4 63 91-153 4-66 (70)
21 1zq3_P PRD-4, homeotic bicoid 99.7 1.4E-17 4.8E-22 138.0 3.7 63 94-156 2-64 (68)
22 2djn_A Homeobox protein DLX-5; 99.7 1E-17 3.5E-22 139.5 2.8 62 91-152 4-65 (70)
23 1ig7_A Homeotic protein MSX-1; 99.7 1.7E-17 5.8E-22 133.0 3.9 57 95-151 1-57 (58)
24 2da1_A Alpha-fetoprotein enhan 99.7 1.4E-17 4.8E-22 138.5 2.9 63 91-153 4-66 (70)
25 1ahd_P Antennapedia protein mu 99.7 1.5E-17 5.2E-22 137.9 2.8 61 94-154 2-62 (68)
26 1yz8_P Pituitary homeobox 2; D 99.7 1E-17 3.5E-22 138.7 1.3 63 93-155 2-64 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.7 2.3E-17 7.9E-22 136.7 3.2 61 94-154 2-62 (68)
28 2l7z_A Homeobox protein HOX-A1 99.7 3E-17 1E-21 137.9 3.8 62 92-153 5-66 (73)
29 1b8i_A Ultrabithorax, protein 99.7 1.8E-17 6.1E-22 142.1 2.2 62 92-153 18-79 (81)
30 1jgg_A Segmentation protein EV 99.7 2.7E-17 9.2E-22 132.9 3.1 58 95-152 2-59 (60)
31 1bw5_A ISL-1HD, insulin gene e 99.7 2E-17 7E-22 136.1 2.4 60 93-152 2-61 (66)
32 2da4_A Hypothetical protein DK 99.7 2.5E-17 8.6E-22 140.6 3.0 62 91-152 5-70 (80)
33 3nar_A ZHX1, zinc fingers and 99.7 2.9E-17 9.8E-22 145.2 3.2 65 91-155 22-86 (96)
34 2r5y_A Homeotic protein sex co 99.6 2.2E-17 7.4E-22 143.5 2.1 62 92-153 26-87 (88)
35 3rkq_A Homeobox protein NKX-2. 99.6 4.7E-17 1.6E-21 129.9 3.4 57 94-150 2-58 (58)
36 1akh_A Protein (mating-type pr 99.6 3.5E-17 1.2E-21 132.4 2.2 59 92-150 3-61 (61)
37 2hi3_A Homeodomain-only protei 99.6 8E-17 2.7E-21 135.3 4.4 59 95-153 3-62 (73)
38 1uhs_A HOP, homeodomain only p 99.6 7.9E-17 2.7E-21 134.9 4.3 59 95-153 2-61 (72)
39 2m0c_A Homeobox protein arista 99.6 7.2E-17 2.5E-21 135.6 3.9 63 91-153 6-68 (75)
40 3a02_A Homeobox protein arista 99.6 4.5E-17 1.5E-21 131.6 2.5 57 97-153 2-58 (60)
41 2k40_A Homeobox expressed in E 99.6 3.8E-17 1.3E-21 134.9 1.6 60 95-154 2-61 (67)
42 3a03_A T-cell leukemia homeobo 99.6 8.1E-17 2.8E-21 128.5 3.3 54 99-152 2-55 (56)
43 1b72_A Protein (homeobox prote 99.6 7.8E-17 2.7E-21 142.5 3.5 63 92-154 32-94 (97)
44 2da5_A Zinc fingers and homeob 99.6 8.6E-17 3E-21 135.9 3.4 59 96-154 9-67 (75)
45 2ecc_A Homeobox and leucine zi 99.6 8.4E-17 2.9E-21 136.6 3.0 58 97-154 6-63 (76)
46 2cuf_A FLJ21616 protein; homeo 99.6 2.1E-16 7.2E-21 139.3 4.5 65 91-155 4-83 (95)
47 1x2n_A Homeobox protein pknox1 99.6 1.6E-16 5.5E-21 133.2 3.5 63 91-153 4-69 (73)
48 2ly9_A Zinc fingers and homeob 99.6 1.5E-16 5.3E-21 133.6 2.6 60 94-153 6-65 (74)
49 2ecb_A Zinc fingers and homeob 99.6 1.1E-16 3.8E-21 139.9 0.9 55 100-154 17-71 (89)
50 2dn0_A Zinc fingers and homeob 99.6 2.5E-16 8.5E-21 133.2 2.5 59 95-153 9-67 (76)
51 1puf_B PRE-B-cell leukemia tra 99.6 3.4E-16 1.2E-20 131.2 3.1 61 95-155 2-65 (73)
52 1e3o_C Octamer-binding transcr 99.6 2.3E-16 8E-21 151.6 2.0 62 91-152 98-159 (160)
53 2dmn_A Homeobox protein TGIF2L 99.6 4.9E-16 1.7E-20 133.9 3.7 65 91-155 4-71 (83)
54 1au7_A Protein PIT-1, GHF-1; c 99.6 2.5E-16 8.5E-21 149.4 1.8 62 91-152 84-145 (146)
55 1b72_B Protein (PBX1); homeodo 99.6 6.5E-16 2.2E-20 133.7 3.9 61 95-155 2-65 (87)
56 2da6_A Hepatocyte nuclear fact 99.6 1.2E-15 4.1E-20 136.2 5.5 65 91-155 3-88 (102)
57 2cqx_A LAG1 longevity assuranc 99.6 2.1E-16 7.2E-21 132.8 0.5 57 95-151 9-66 (72)
58 2dmp_A Zinc fingers and homeob 99.6 7.1E-16 2.4E-20 134.6 3.8 58 97-154 16-73 (89)
59 1du6_A PBX1, homeobox protein 99.6 3.8E-16 1.3E-20 127.6 1.6 58 94-151 3-63 (64)
60 1k61_A Mating-type protein alp 99.6 6.5E-16 2.2E-20 124.7 2.9 55 97-151 1-58 (60)
61 1wi3_A DNA-binding protein SAT 99.6 8.7E-16 3E-20 126.7 3.7 60 91-150 4-64 (71)
62 2xsd_C POU domain, class 3, tr 99.6 3.2E-16 1.1E-20 151.3 1.0 64 91-154 96-159 (164)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 1.3E-15 4.3E-20 132.1 3.6 58 93-150 26-86 (87)
64 1le8_B Mating-type protein alp 99.5 6.5E-16 2.2E-20 133.0 1.5 60 94-153 2-64 (83)
65 3d1n_I POU domain, class 6, tr 99.5 8.8E-16 3E-20 146.2 2.3 61 91-151 90-150 (151)
66 3nau_A Zinc fingers and homeob 99.5 1.7E-15 5.9E-20 124.8 2.9 53 101-153 11-63 (66)
67 2l9r_A Homeobox protein NKX-3. 99.5 5.3E-16 1.8E-20 129.5 -0.6 55 100-154 10-64 (69)
68 1lfb_A Liver transcription fac 99.5 7.7E-16 2.6E-20 137.1 0.4 65 91-155 6-91 (99)
69 1x2m_A LAG1 longevity assuranc 99.5 1.8E-15 6.1E-20 124.4 0.8 49 103-151 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.5 5.2E-15 1.8E-19 141.6 2.6 61 92-152 94-154 (155)
71 2e19_A Transcription factor 8; 99.5 4.9E-15 1.7E-19 121.8 1.5 52 100-151 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.5 6E-15 2E-19 142.0 1.6 63 91-153 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.4 4.2E-14 1.4E-18 117.1 1.5 58 100-157 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.3 1E-13 3.5E-18 137.2 -0.4 61 91-151 112-193 (194)
75 1em2_A MLN64 protein; beta bar 99.3 9.1E-11 3.1E-15 117.4 16.4 200 286-517 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.3 4.5E-11 1.5E-15 119.1 13.9 194 288-515 11-213 (221)
77 2pso_A STAR-related lipid tran 99.2 6.4E-11 2.2E-15 120.1 14.3 172 291-491 32-206 (237)
78 2h8r_A Hepatocyte nuclear fact 99.2 3.1E-12 1.1E-16 128.3 2.3 60 90-149 138-218 (221)
79 2lk2_A Homeobox protein TGIF1; 99.2 1E-11 3.4E-16 108.3 3.4 57 99-155 10-69 (89)
80 2da7_A Zinc finger homeobox pr 99.1 1E-11 3.5E-16 103.2 2.1 46 103-148 14-59 (71)
81 1mh3_A Maltose binding-A1 home 99.1 1.3E-11 4.5E-16 132.0 -0.8 56 95-150 366-421 (421)
82 1jss_A Stard4, cholesterol-reg 99.0 3E-09 1E-13 106.3 11.8 191 288-515 25-222 (224)
83 1ln1_A PC-TP, phosphatidylchol 98.9 4.5E-09 1.5E-13 103.3 12.7 152 345-517 52-210 (214)
84 3fo5_A Thioesterase, adipose a 98.8 8.8E-09 3E-13 106.1 10.9 122 348-482 91-216 (258)
85 3qsz_A STAR-related lipid tran 98.5 8.8E-07 3E-11 85.5 12.6 152 346-516 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.3 1.9E-08 6.4E-13 73.8 -2.4 22 136-157 1-22 (37)
87 2e3n_A Lipid-transfer protein 98.3 2.8E-06 9.4E-11 86.2 12.1 200 289-517 24-247 (255)
88 2d4r_A Hypothetical protein TT 94.3 0.25 8.5E-06 43.2 9.9 140 349-517 6-145 (147)
89 2r55_A STAR-related lipid tran 93.5 0.18 6.2E-06 49.7 8.2 82 535-627 18-101 (231)
90 3qsz_A STAR-related lipid tran 88.7 0.44 1.5E-05 45.3 5.1 57 562-627 3-59 (189)
91 3p0l_A Steroidogenic acute reg 88.5 1.3 4.4E-05 43.3 8.5 78 539-627 10-88 (221)
92 1ln1_A PC-TP, phosphatidylchol 88.2 0.33 1.1E-05 46.9 4.0 59 560-627 26-85 (214)
93 1jss_A Stard4, cholesterol-reg 88.0 0.91 3.1E-05 44.6 7.0 73 541-626 26-98 (224)
94 3fo5_A Thioesterase, adipose a 87.8 0.62 2.1E-05 47.6 5.9 107 503-626 10-119 (258)
95 2ys9_A Homeobox and leucine zi 86.2 0.17 5.7E-06 42.0 0.4 39 106-144 18-56 (70)
96 2jn6_A Protein CGL2762, transp 85.7 0.17 5.8E-06 43.3 0.2 42 99-144 4-46 (97)
97 3tfz_A Cyclase; helix-GRIP, BE 84.9 8.3 0.00028 35.9 11.7 145 348-519 8-162 (172)
98 3tl1_A WHIE ORF VI, polyketide 83.0 9.2 0.00031 35.7 11.0 110 348-485 6-117 (159)
99 3tvq_A Multifunctional cyclase 80.3 16 0.00053 34.5 11.7 145 348-520 6-150 (169)
100 2e3n_A Lipid-transfer protein 79.6 2.4 8.2E-05 42.3 6.0 76 541-626 28-105 (255)
101 1t17_A Conserved hypothetical 76.5 4.4 0.00015 36.5 6.3 141 348-517 5-145 (148)
102 3p9v_A Uncharacterized protein 75.9 16 0.00055 33.6 10.2 109 349-483 11-119 (161)
103 1em2_A MLN64 protein; beta bar 74.9 4 0.00014 39.9 6.0 78 539-627 21-99 (229)
104 2j5u_A MREC protein; bacterial 66.1 2.5 8.6E-05 43.0 2.3 37 161-216 24-60 (255)
105 2jee_A YIIU; FTSZ, septum, coi 66.0 9.5 0.00033 32.4 5.4 22 201-222 50-71 (81)
106 2wt7_B Transcription factor MA 63.1 9.5 0.00033 33.1 5.0 68 132-221 17-84 (90)
107 1t2k_D Cyclic-AMP-dependent tr 54.9 27 0.00094 27.5 6.1 40 154-215 20-59 (61)
108 1ci6_A Transcription factor AT 53.4 30 0.001 27.7 6.2 41 154-216 21-61 (63)
109 2pso_A STAR-related lipid tran 53.1 17 0.00058 36.0 5.7 59 560-629 48-107 (237)
110 2qpv_A Uncharacterized protein 50.0 11 0.00037 35.3 3.5 30 596-625 28-57 (156)
111 1gd2_E Transcription factor PA 48.8 39 0.0013 27.8 6.2 18 200-217 51-68 (70)
112 2elh_A CG11849-PA, LD40883P; s 47.6 16 0.00055 30.4 3.9 45 93-142 15-59 (87)
113 3ra3_B P2F; coiled coil domain 47.4 9 0.00031 25.4 1.7 17 202-218 3-19 (28)
114 3a5t_A Transcription factor MA 46.9 5.6 0.00019 35.5 0.9 22 199-220 72-93 (107)
115 2rgt_A Fusion of LIM/homeobox 46.2 0.68 2.3E-05 43.8 -5.6 30 92-121 134-163 (169)
116 2pcs_A Conserved protein; stru 45.8 1.6E+02 0.0055 26.1 12.8 118 350-495 8-127 (162)
117 1hjb_A Ccaat/enhancer binding 44.6 37 0.0013 29.1 5.7 18 159-176 39-56 (87)
118 1hlv_A CENP-B, major centromer 44.2 12 0.00042 32.9 2.7 48 97-147 4-51 (131)
119 2d4r_A Hypothetical protein TT 41.9 12 0.00041 32.1 2.3 29 597-625 4-32 (147)
120 2glo_A Brinker CG9653-PA; prot 41.2 7.8 0.00027 29.9 0.8 45 98-143 3-47 (59)
121 1gu4_A CAAT/enhancer binding p 37.3 46 0.0016 27.9 5.0 16 206-221 57-72 (78)
122 1jnm_A Proto-oncogene C-JUN; B 37.3 35 0.0012 27.0 4.1 23 154-176 20-42 (62)
123 2pcs_A Conserved protein; stru 36.3 13 0.00045 33.6 1.7 28 597-624 5-32 (162)
124 2ns9_A Hypothetical protein AP 36.1 15 0.00052 32.7 2.1 29 596-624 14-42 (157)
125 3ggn_A Uncharacterized protein 34.1 22 0.00075 32.3 2.8 30 596-625 5-34 (155)
126 1t17_A Conserved hypothetical 33.8 20 0.00069 32.0 2.5 32 597-628 4-35 (148)
127 1l8d_A DNA double-strand break 32.8 28 0.00094 30.3 3.1 13 181-193 47-59 (112)
128 2leq_A Uncharacterized protein 31.5 29 0.00098 30.2 3.0 28 596-623 6-33 (146)
129 3q6a_A Uncharacterized protein 30.2 31 0.0011 30.3 3.0 27 598-624 4-30 (135)
130 1jko_C HIN recombinase, DNA-in 29.9 11 0.00038 27.0 0.0 43 100-147 5-47 (52)
131 3tfz_A Cyclase; helix-GRIP, BE 29.7 31 0.001 32.0 3.1 31 596-626 6-36 (172)
132 3hug_A RNA polymerase sigma fa 29.0 29 0.00098 28.9 2.5 48 100-152 37-84 (92)
133 3p51_A Uncharacterized protein 28.2 1.2E+02 0.004 28.1 6.8 123 349-500 6-134 (160)
134 1x53_A Activator of 90 kDa hea 27.6 32 0.0011 30.6 2.7 28 597-624 13-40 (145)
135 2wt7_A Proto-oncogene protein 27.4 1.4E+02 0.0049 23.5 6.2 25 154-178 21-45 (63)
136 3he5_B Synzip2; heterodimeric 27.1 1.2E+02 0.0041 22.7 5.1 22 199-220 24-45 (52)
137 3s9g_A Protein hexim1; cyclin 26.9 86 0.003 27.5 5.0 46 151-214 32-87 (104)
138 2le1_A Uncharacterized protein 24.6 48 0.0016 29.5 3.3 28 597-624 4-31 (151)
139 2ns9_A Hypothetical protein AP 24.5 3.4E+02 0.012 23.5 9.6 27 351-377 19-45 (157)
140 1tc3_C Protein (TC3 transposas 24.5 27 0.00091 24.4 1.3 40 100-144 5-44 (51)
141 3m91_A Proteasome-associated A 24.3 1.1E+02 0.0037 23.7 4.7 38 160-219 13-50 (51)
142 3i5g_B Myosin regulatory light 23.9 97 0.0033 27.8 5.3 39 98-136 7-50 (153)
143 1s7o_A Hypothetical UPF0122 pr 23.1 60 0.002 28.5 3.5 49 100-153 22-70 (113)
144 3m48_A General control protein 22.9 47 0.0016 23.5 2.1 21 203-223 11-31 (33)
145 1z94_A Conserved hypothetical 22.7 32 0.0011 30.0 1.7 26 599-624 7-32 (147)
146 1xn6_A Hypothetical protein BC 22.5 33 0.0011 30.3 1.7 27 598-624 11-37 (143)
147 3tvq_A Multifunctional cyclase 22.3 47 0.0016 31.2 2.8 32 596-627 4-35 (169)
148 2kew_A Uncharacterized protein 22.2 35 0.0012 30.8 1.9 27 597-623 12-38 (152)
149 1je8_A Nitrate/nitrite respons 21.8 33 0.0011 28.1 1.5 43 98-146 19-61 (82)
150 2lcg_A Uncharacterized protein 21.4 35 0.0012 30.2 1.7 26 598-623 4-29 (142)
151 3mzy_A RNA polymerase sigma-H 21.3 49 0.0017 29.2 2.6 46 100-151 109-154 (164)
152 3p9v_A Uncharacterized protein 20.6 55 0.0019 30.0 2.9 27 593-619 5-31 (161)
153 2l8o_A Uncharacterized protein 20.4 39 0.0013 30.2 1.8 25 599-623 6-30 (144)
154 2lgh_A Uncharacterized protein 20.2 39 0.0013 30.2 1.7 26 598-623 4-29 (144)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=184.84 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=157.9
Q ss_pred chhHHHHHHHHHHHHHHHhhccCCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHh
Q 005853 285 DRNMLIDLALTAMDELIKMAEADSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETM 364 (673)
Q Consensus 285 ~~~~~~~lA~~Am~El~~la~~~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~l 364 (673)
+++.+.++|++||+||+++++. +..|....+. ++.+.|.+.. .+....+.|..++|.+.+.+|++.|
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~--------~gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRD-TAGWKICREG--------NGVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECC--------SSEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeC--------CCEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 4788999999999999999965 4789876432 1233332221 1223478899999999999999999
Q ss_pred cC-----hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeee-ehhcccccccceeeEEEEeeeeecCceEEEEEE
Q 005853 365 MD-----ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVA-EFQVLSPLVPVRQAKFLRFCKQHIEGVWAVVDV 438 (673)
Q Consensus 365 mD-----~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~a-El~~~SPLvp~Re~~flRyckq~~~g~w~VvDv 438 (673)
|+ +.+|-+.| ..+++++.| + +.-.++|. ....++++|++|||.++||+++.++|.|+|+..
T Consensus 87 ~~~d~~~r~~Wd~~~----~~~~vle~i-~--------~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~ 153 (231)
T 2r55_A 87 KPAVGGLRVKWDENV----TGFEIIQSI-T--------DTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNAT 153 (231)
T ss_dssp CC--CCSHHHHCTTC----SEEEEEEEC-S--------SSEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HhhCcchhhhhcccc----ceeEEEEEc-C--------CCEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEE
Confidence 77 88997763 468888888 3 22234442 223456799999999999999999999999999
Q ss_pred eccCCCCCCCCCccccccccCCcceEeeCC--CCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHHH
Q 005853 439 SIDTNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 (673)
Q Consensus 439 S~d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~cer 516 (673)
|++... .+....++|+..++|||+|++++ +|.|+|||+.|++..-+ +| +.++++.++.++..|++.|+++|+.
T Consensus 154 Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~ 228 (231)
T 2r55_A 154 HVEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQ 228 (231)
T ss_dssp ECCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred eccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 998532 22233689999999999999998 78999999999998765 54 6788899999999999999999985
Q ss_pred H
Q 005853 517 L 517 (673)
Q Consensus 517 l 517 (673)
+
T Consensus 229 ~ 229 (231)
T 2r55_A 229 F 229 (231)
T ss_dssp G
T ss_pred h
Confidence 4
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=148.39 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
..++.||+|++||.+|+..||..|+.++||+..+|++||++|||+++||++||||||+|+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 355678889999999999999999999999999999999999999999999999999999974
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=148.47 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
++++||+|++||.+|+..||..|..++||+..+|++||++|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999753
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=149.81 Aligned_cols=64 Identities=30% Similarity=0.315 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
..+++||+|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567788999999999999999999999999999999999999999999999999999999754
No 5
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=1.9e-18 Score=151.98 Aligned_cols=75 Identities=32% Similarity=0.445 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHHhHHHHHhh
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHENIILRQEH 165 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~ 165 (673)
++++||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..+.+.....+.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~ 88 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAAN 88 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999987776655555444
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.71 E-value=5.4e-18 Score=143.84 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
++++||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456788899999999999999999999999999999999999999999999999999999876543
No 7
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=2.6e-18 Score=147.31 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKE----CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.+++||+||.||.+|+..||+.|+. ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567888999999999999999999 999999999999999999999999999999999874
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=7.4e-18 Score=144.00 Aligned_cols=65 Identities=26% Similarity=0.474 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
.+.||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 45688899999999999999999999999999999999999999999999999999999876543
No 9
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=5.6e-18 Score=144.99 Aligned_cols=64 Identities=31% Similarity=0.562 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.+++||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999998653
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-18 Score=144.58 Aligned_cols=64 Identities=27% Similarity=0.578 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.++||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|++..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999987654
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.69 E-value=6.1e-18 Score=138.07 Aligned_cols=61 Identities=34% Similarity=0.432 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
++||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578899999999999999999999999999999999999999999999999999999853
No 12
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=4.2e-18 Score=146.04 Aligned_cols=60 Identities=18% Similarity=0.359 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKE-----CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.+++||+||.||.+|+..|| .|.+ ++||+..+|++||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 7999 999999999999999999999999999999999874
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=4.9e-18 Score=145.02 Aligned_cols=64 Identities=27% Similarity=0.544 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
+++.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999998654
No 14
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=6e-18 Score=140.94 Aligned_cols=63 Identities=30% Similarity=0.450 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.++.||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 345688899999999999999999999999999999999999999999999999999999743
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=3.2e-18 Score=139.21 Aligned_cols=60 Identities=32% Similarity=0.383 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999974
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=139.15 Aligned_cols=62 Identities=27% Similarity=0.574 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.+.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=2.1e-17 Score=140.22 Aligned_cols=65 Identities=37% Similarity=0.455 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.++.||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+....
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999987653
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=138.45 Aligned_cols=62 Identities=31% Similarity=0.422 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.+.|++|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 35577889999999999999999999999999999999999999999999999999999854
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.68 E-value=9e-18 Score=136.12 Aligned_cols=58 Identities=34% Similarity=0.604 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
+||+|+.||.+|+..||..|+.++||+..+|++||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=139.13 Aligned_cols=63 Identities=29% Similarity=0.501 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.+++||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 446688899999999999999999999999999999999999999999999999999999743
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=1.4e-17 Score=138.00 Aligned_cols=63 Identities=33% Similarity=0.538 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERH 156 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~ 156 (673)
.||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 478899999999999999999999999999999999999999999999999999999876543
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-17 Score=139.53 Aligned_cols=62 Identities=31% Similarity=0.536 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
+.+.||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 34668889999999999999999999999999999999999999999999999999999874
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.7e-17 Score=132.99 Aligned_cols=57 Identities=35% Similarity=0.517 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578899999999999999999999999999999999999999999999999999986
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=138.46 Aligned_cols=63 Identities=30% Similarity=0.488 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
..+.||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 346688899999999999999999999999999999999999999999999999999999753
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.66 E-value=1.5e-17 Score=137.89 Aligned_cols=61 Identities=36% Similarity=0.484 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
+||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5788999999999999999999999999999999999999999999999999999998653
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.66 E-value=1e-17 Score=138.73 Aligned_cols=63 Identities=27% Similarity=0.534 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
++||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467889999999999999999999999999999999999999999999999999999986543
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-17 Score=136.72 Aligned_cols=61 Identities=34% Similarity=0.509 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
+||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999998654
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.66 E-value=3e-17 Score=137.94 Aligned_cols=62 Identities=29% Similarity=0.422 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.+.||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45688899999999999999999999999999999999999999999999999999999754
No 29
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.65 E-value=1.8e-17 Score=142.11 Aligned_cols=62 Identities=34% Similarity=0.511 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
+++||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999754
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.65 E-value=2.7e-17 Score=132.88 Aligned_cols=58 Identities=34% Similarity=0.471 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5788999999999999999999999999999999999999999999999999999974
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=2e-17 Score=136.06 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
++||+|++||.+|+..||..|+.++||+..++++||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 468889999999999999999999999999999999999999999999999999999874
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-17 Score=140.61 Aligned_cols=62 Identities=10% Similarity=0.292 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKEC----PHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
..++||+|+.||.+|+..||..|+.+ +||+..+|++||.+|||+++||++||||||+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 34678889999999999999999999 999999999999999999999999999999999974
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.65 E-value=2.9e-17 Score=145.16 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.+..+|+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34557788999999999999999999999999999999999999999999999999999986544
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=2.2e-17 Score=143.54 Aligned_cols=62 Identities=34% Similarity=0.443 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
++.||+|++||.+|+..||..|+.++||+..+|++||.+|||+++||++||||||+|+|+++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35678899999999999999999999999999999999999999999999999999999753
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.64 E-value=4.7e-17 Score=129.87 Aligned_cols=57 Identities=39% Similarity=0.524 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
+||.|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467889999999999999999999999999999999999999999999999999976
No 36
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.64 E-value=3.5e-17 Score=132.42 Aligned_cols=59 Identities=24% Similarity=0.462 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
.+++|+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678889999999999999999999999999999999999999999999999999976
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=8e-17 Score=135.26 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999995 99999999999999999999999999999999999855
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=7.9e-17 Score=134.85 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.|+|++||.+|+..||..|.. ++||+..+|++||++|||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467789999999999999996 99999999999999999999999999999999999854
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-17 Score=135.58 Aligned_cols=63 Identities=29% Similarity=0.532 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.++++|.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 446688899999999999999999999999999999999999999999999999999999754
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.63 E-value=4.5e-17 Score=131.57 Aligned_cols=57 Identities=37% Similarity=0.600 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-17 Score=134.86 Aligned_cols=60 Identities=32% Similarity=0.543 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678899999999999999999999999999999999999999999999999999997543
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=8.1e-17 Score=128.49 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 99 HRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
|.||.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=7.8e-17 Score=142.54 Aligned_cols=63 Identities=30% Similarity=0.407 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.+.||+|++||.+|+..||..|..++||+..+|++||.+|||+++||++||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356788999999999999999999999999999999999999999999999999999998654
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-17 Score=135.89 Aligned_cols=59 Identities=27% Similarity=0.574 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 96 KKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 96 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
++|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45567999999999999999999999999999999999999999999999999998654
No 45
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=8.4e-17 Score=136.56 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
+|++||.+|+.+||+.|..++||+..+|++||+++||+++||++||||||+|+|+.+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999997543
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.1e-16 Score=139.28 Aligned_cols=65 Identities=26% Similarity=0.483 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------LESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------Ls~rQVkvWFQNRRak~Kr~~~~ 155 (673)
.+++||.|+.||.+|+.+||..|+.++||+..+|++||++|| |+++||++||||||+|+|+++..
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999986643
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.6e-16 Score=133.21 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
+++.|++|++||.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3456788899999999999999977 99999999999999999999999999999999999754
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=133.57 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.++.|+.||.+|+..||..|..++||+..+|++||.++||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467889999999999999999999999999999999999999999999999999999754
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.1e-16 Score=139.89 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
+||.+|+.+||+.|..++||+..+|++||.+|||+++||+|||||||+|||++++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999997543
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-16 Score=133.24 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
++.|++||.+|+..||..|..++||+..+|++||++|||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34578899999999999999999999999999999999999999999999999999754
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.59 E-value=3.4e-16 Score=131.21 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6788999999999999999 999999999999999999999999999999999999986544
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=2.3e-16 Score=151.62 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
.+++||+|++||.+|+..||+.|..++||+..+|++||++|||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34778899999999999999999999999999999999999999999999999999999973
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-16 Score=133.86 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
+.++||+|++||.+|+..||..|.+ ++||+..+|++||.++||+++||++||||||+|+|+...+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3467888999999999999999987 6999999999999999999999999999999999975443
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=2.5e-16 Score=149.35 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
.+++||+|++||.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999974
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.57 E-value=6.5e-16 Score=133.66 Aligned_cols=61 Identities=25% Similarity=0.578 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 95 KKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
||+|++||.+|+..||..| ..++||+..+|++||+++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6788999999999999999 899999999999999999999999999999999999986544
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=136.17 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCcceEEeecchhhhHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRL---------------------GLESKQIKFWFQNRRTQM 149 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L---------------------gLs~rQVkvWFQNRRak~ 149 (673)
.+++||.|++||+.|+.+||+.|+.++||+..+|++||++| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678899999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHH
Q 005853 150 KTQMER 155 (673)
Q Consensus 150 Kr~~~~ 155 (673)
|+++..
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986543
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=2.1e-16 Score=132.80 Aligned_cols=57 Identities=32% Similarity=0.471 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 95 KKKYHRHTPHQIQELESFF-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.|+|++++.+|+.+||+.| ..++||+..+|++||++|||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4556678999999999999 99999999999999999999999999999999999985
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.1e-16 Score=134.58 Aligned_cols=58 Identities=24% Similarity=0.436 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
++.+||.+|+.+||..|..++||+..+|++||++|||+++||++||||||+|+|++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3345999999999999999999999999999999999999999999999999986543
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=3.8e-16 Score=127.61 Aligned_cols=58 Identities=24% Similarity=0.504 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFF---KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.+++|++||.+|+..||..| ..++||+..++++||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 99999999999999999999999999999999999885
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.57 E-value=6.5e-16 Score=124.66 Aligned_cols=55 Identities=38% Similarity=0.537 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 97 KYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
+|++||.+|+..||..|.. ++||+..+|++||+++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678999999999999999 999999999999999999999999999999999986
No 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=8.7e-16 Score=126.72 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKE-CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
.+++||.||.||.+|+..|+.+|+. ++||+...|++||.+|||++++|+|||||||.-.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4467889999999999999999999 99999999999999999999999999999997543
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.56 E-value=3.2e-16 Score=151.33 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.+++||+|++||.+|+..||+.|..++||+..+|.+||++|||+++||++||||||+|+||+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4577889999999999999999999999999999999999999999999999999999998653
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.55 E-value=1.3e-15 Score=132.12 Aligned_cols=58 Identities=34% Similarity=0.496 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 93 PRKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
+++|+|++||.+|+..||..|.. ++||+..+|++||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667899999999999999999 99999999999999999999999999999999987
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.55 E-value=6.5e-16 Score=132.97 Aligned_cols=60 Identities=33% Similarity=0.458 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 94 RKKKYHRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 94 krr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
|+++|++||.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 3456677999999999999999 99999999999999999999999999999999999753
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.55 E-value=8.8e-16 Score=146.16 Aligned_cols=61 Identities=26% Similarity=0.665 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.+++||+|++||.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567888999999999999999999999999999999999999999999999999999986
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=124.79 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 101 HTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 101 fT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
-|.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-16 Score=129.46 Aligned_cols=55 Identities=33% Similarity=0.491 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQME 154 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~ 154 (673)
.+|..|+.+||+.|..++||+..+|.+||++|||+++||++||||||+|+|+++.
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5799999999999999999999999999999999999999999999999997654
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.53 E-value=7.7e-16 Score=137.09 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCcceEEeecchhhhHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRR------------------LG---LESKQIKFWFQNRRTQM 149 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------Lg---Ls~rQVkvWFQNRRak~ 149 (673)
.+++||.|+.||.+|+..||..|..++||+..+|++||.+ || |+++||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHHH
Q 005853 150 KTQMER 155 (673)
Q Consensus 150 Kr~~~~ 155 (673)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 876543
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.8e-15 Score=124.43 Aligned_cols=49 Identities=37% Similarity=0.599 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 103 PHQIQELESFF-KECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 103 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
++|+.+||+.| ..++||+..+|.+||++|||+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 67999999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=5.2e-15 Score=141.56 Aligned_cols=61 Identities=31% Similarity=0.555 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
+++||+|++||.+|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-15 Score=121.76 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.++.+|+..||+.|..++||+..+|.+||++|||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4678999999999999999999999999999999999999999999998774
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.47 E-value=6e-15 Score=141.99 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
++++||+|++||.+|+..||+.|+.++||+..+|++||++|||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 456788999999999999999999999999999999999999999999999999999998643
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=4.2e-14 Score=117.07 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHHHH
Q 005853 100 RHTPHQIQELESFFK---ECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMERHE 157 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~~e 157 (673)
+||.+|+..||..|. .++||+..+|++||.++||+++||++||||||+|+|+...++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998655543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.33 E-value=1e-13 Score=137.22 Aligned_cols=61 Identities=18% Similarity=0.332 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCcceEEeecchhhhHH
Q 005853 91 GPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------------LESKQIKFWFQNRRTQM 149 (673)
Q Consensus 91 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRak~ 149 (673)
.+++||.|+.||..|+.+||+.|..++||+..+|++||++|+ |++.||++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 456788899999999999999999999999999999999999 99999999999999998
Q ss_pred HH
Q 005853 150 KT 151 (673)
Q Consensus 150 Kr 151 (673)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.26 E-value=9.1e-11 Score=117.37 Aligned_cols=200 Identities=10% Similarity=0.115 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCeeecCC--CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-H
Q 005853 286 RNMLIDLALTAMDELIKMAEADSPLWIKSLD--GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-E 362 (673)
Q Consensus 286 ~~~~~~lA~~Am~El~~la~~~~plWi~~~~--~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LV-e 362 (673)
....++++..|+++++++... .--|-.... .+.. -|.+..+.. |. .-|..++|.+.+..+. +
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~-----vy~~~~~~~------g~---~~k~~~~v~~~~~~v~~~ 84 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDT-----VYTIEVPFH------GK---TFILKTFLPCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCE-----EEEEEETTT------EE---EEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCE-----EEEEecCCC------Cc---eEEEEEEecCCHHHHHHH
Confidence 356789999999999999863 347966532 1111 144433311 11 3488899999999998 7
Q ss_pred HhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcc--cccccceeeEEEEeeeeecCceEEEEEEec
Q 005853 363 TMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL--SPLVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (673)
Q Consensus 363 ~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~--SPLvp~Re~~flRyckq~~~g~w~VvDvS~ 440 (673)
+|.|.+...+-.+. +..++.++.+ . +++ .+ +-++..+ .++++.|||.++|+++.. ++.++|+-.|+
T Consensus 85 ~~~d~~~r~~Wd~~-~~~~~vle~~-~-------~~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv 152 (229)
T 1em2_A 85 VILQPERMVLWNKT-VTACQILQRV-E-------DNT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIAT 152 (229)
T ss_dssp TTTCHHHHTTTCTT-EEEEEEEEEE-T-------TTE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEEC
T ss_pred HHhCccchhhcccc-cceEEEEEec-C-------CCe-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecc
Confidence 77776533333333 3457777777 3 122 23 4446654 578999999999999997 56699999999
Q ss_pred cCCCCCCCCCccccccccCCcceEeeCC--CCcceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHHHH
Q 005853 441 DTNREGLSADPFQTYRRLPSGFVVQDVP--NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCECL 517 (673)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~cerl 517 (673)
+... .+....++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-..++.|+.+|+.+
T Consensus 153 ~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 153 SHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7542 22234789999999999999987 67899999999987654 55 56677777777777889998888754
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.25 E-value=4.5e-11 Score=119.10 Aligned_cols=194 Identities=12% Similarity=0.177 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCeeecC-C-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHh-
Q 005853 288 MLIDLALTAMDELIKMAEADSPLWIKSL-D-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETM- 364 (673)
Q Consensus 288 ~~~~lA~~Am~El~~la~~~~plWi~~~-~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~l- 364 (673)
-...+|++||+|++++.+ ++.-|-... + .+.. -|.+.+|.. | -.=|..++|...+..+.+.|
T Consensus 11 ~y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILS-NQEGWKKESQQDNGDK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 356899999999999976 455797652 2 2211 234443322 2 33488999999999999998
Q ss_pred cC---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeeh-hcccccccceeeEEEEeeeeecCceEEEEEEec
Q 005853 365 MD---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEF-QVLSPLVPVRQAKFLRFCKQHIEGVWAVVDVSI 440 (673)
Q Consensus 365 mD---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl-~~~SPLvp~Re~~flRyckq~~~g~w~VvDvS~ 440 (673)
+| +.+|-.. +..++.++.+ + +.-.+.|... ..+.++|++|||.++||.++. +|.++|+-.|+
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~-~--------~~t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv 141 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKI-G--------KDTFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMAT 141 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEEC-S--------SSEEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEEC
T ss_pred hccchhhhcCcc----hheEEEEEec-C--------CCeEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEec
Confidence 46 4567665 4456666666 2 2234566443 223568999999999999986 68899999998
Q ss_pred cCCCCCCCCCccccccccCCcceEeeCCCC--cceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 441 DTNREGLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 441 d~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
+... .+....++|...+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 142 ~~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 142 DFGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CCTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7431 1222378999999999999999988 999999999987765 43 345666666677778999988887
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.24 E-value=6.4e-11 Score=120.12 Aligned_cols=172 Identities=14% Similarity=0.185 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhhccCCCCeeecCCC-CccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHH-HHhcChh
Q 005853 291 DLALTAMDELIKMAEADSPLWIKSLDG-GRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALI-ETMMDAN 368 (673)
Q Consensus 291 ~lA~~Am~El~~la~~~~plWi~~~~~-~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LV-e~lmD~~ 368 (673)
.++..++.|+++.+.....-|-...+. +..+ |.+..+ .|...-.-|..++|...+.+++ ++|.|+.
T Consensus 32 ~~l~~~~~~ll~~~~~~~~gW~~~~~~~gi~V-----~~k~~~-------~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~ 99 (237)
T 2pso_A 32 TYLNHLIQGLQKEAKEKFKGWVTCSSTDNTDL-----AFKKVG-------DGNPLKLWKASVEVEAPPSVVLNRVLRERH 99 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCSCEEECCSSSCEE-----EEECCC-------SSCCCCEEEEEEEESSCHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-----EEEEcC-------CCCCcEEEEEEEEEcCChHHHHHHHHhhhh
Confidence 344577788887765545569775432 1111 222221 2333335577788877777765 7899999
Q ss_pred hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee-ecCceEEEEEEeccCCCCCC
Q 005853 369 RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ-HIEGVWAVVDVSIDTNREGL 447 (673)
Q Consensus 369 ~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq-~~~g~w~VvDvS~d~~~~~~ 447 (673)
+|-.. +..++.++.| . +.-.++|..+..+.| ++.|||.++||.++ +++|.++||-.|++... .+
T Consensus 100 ~Wd~~----~~~~~vle~i-d--------~~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P 164 (237)
T 2pso_A 100 LWDED----FVQWKVVETL-D--------RQTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQ 164 (237)
T ss_dssp GTCTT----BCCCEEEEEE-E--------TTEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CC
T ss_pred hHHhh----hceEEEEEEc-C--------CCcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CC
Confidence 99876 4556777777 2 233677777776665 79999999999986 78999999999998532 23
Q ss_pred CCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccc
Q 005853 448 SADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLC 491 (673)
Q Consensus 448 ~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 491 (673)
.. .++|+..+++|++|+++++|.|+|||+-|++.. ..+|.-+
T Consensus 165 ~~-g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~l 206 (237)
T 2pso_A 165 LL-GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWY 206 (237)
T ss_dssp CC-SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTT
T ss_pred CC-CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHH
Confidence 33 789999999999999999999999999999987 4577654
No 78
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.20 E-value=3.1e-12 Score=128.33 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCcceEEeecchhhhH
Q 005853 90 DGPPRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLG---------------------LESKQIKFWFQNRRTQ 148 (673)
Q Consensus 90 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~Lg---------------------Ls~rQVkvWFQNRRak 148 (673)
..+++||.|+.|++.|+.+||+.|..++||+..+|++||+++| |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3566788889999999999999999999999999999999988 8999999999999986
Q ss_pred H
Q 005853 149 M 149 (673)
Q Consensus 149 ~ 149 (673)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 79
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=108.30 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHHHH
Q 005853 99 HRHTPHQIQELESFFKE---CPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQMER 155 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~~~ 155 (673)
+.|+.+++..|+..|.+ ++||+..+|++||+++||+++||++||||+|.|+|+...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46899999999999987 9999999999999999999999999999999999976544
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1e-11 Score=103.17 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhH
Q 005853 103 PHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQ 148 (673)
Q Consensus 103 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak 148 (673)
.+|+..||++|..+++|+..++.+||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999974
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.05 E-value=1.3e-11 Score=132.05 Aligned_cols=56 Identities=23% Similarity=0.475 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHH
Q 005853 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 (673)
Q Consensus 95 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~K 150 (673)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45567899999999999999999999999999999999999999999999999876
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.95 E-value=3e-09 Score=106.28 Aligned_cols=191 Identities=10% Similarity=0.115 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCeeecCC-CCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEEechhHHHHHhcC
Q 005853 288 MLIDLALTAMDELIKMAEADSPLWIKSLD-GGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVIINSSALIETMMD 366 (673)
Q Consensus 288 ~~~~lA~~Am~El~~la~~~~plWi~~~~-~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~~~~~~LVe~lmD 366 (673)
-+.+.+.++|..+..+. +.-|-...+ .+. .=|.+..+ +...-.-|..++|...+..|.+.|+|
T Consensus 25 ~~~~~~~e~l~~~~~~~---~~~W~~~~~~~gv-----~vy~~~~~--------~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 25 SISTKLQNTLIQYHSIE---EDEWRVAKKAKDV-----TVWRKPSE--------EFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp THHHHHHHHHHHHTTSC---GGGCEEEEEETTE-----EEEEEECS--------SSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhC---CCCCEEEEECCCE-----EEEEEecc--------CCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 36666666666665543 456966432 111 11222111 11223458889999999999999999
Q ss_pred hh---hHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcc-cccccceeeEEEEeeeeecCceEEEEEEeccC
Q 005853 367 AN---RWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVL-SPLVPVRQAKFLRFCKQHIEGVWAVVDVSIDT 442 (673)
Q Consensus 367 ~~---~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~-SPLvp~Re~~flRyckq~~~g~w~VvDvS~d~ 442 (673)
.. +|-.. +..++.++.| ++.-.+.|.-+..+ -|+|..|||.++|+.++.++| ++|+-+|++.
T Consensus 89 ~~~r~~Wd~~----~~~~~vle~i---------d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~h 154 (224)
T 1jss_A 89 GPWRLDWDRL----MTSLDVLEHF---------EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEW 154 (224)
T ss_dssp STTHHHHCSS----EEEEEEEEEC---------STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCC
T ss_pred cccccccccc----eeeEEEEEEc---------CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeec
Confidence 65 77665 3446666666 22335666655533 457999999999999998777 7889999984
Q ss_pred CCCCCCCCccccccccCCcceEeeCCCC--cceEEEEEeeeeccccccccccccccccchhhHHHHHHHHHHHHH
Q 005853 443 NREGLSADPFQTYRRLPSGFVVQDVPNN--YSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCE 515 (673)
Q Consensus 443 ~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla~LqR~ce 515 (673)
... ...++|....++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 155 p~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 155 SET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 332 2378999999999999999875 899999999987654 34 355666666777778888877764
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.95 E-value=4.5e-09 Score=103.30 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=118.6
Q ss_pred eeeecceeEE-echhHHHHHhcC---hhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeE
Q 005853 345 EASRETGMVI-INSSALIETMMD---ANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAK 420 (673)
Q Consensus 345 EasR~~~~V~-~~~~~LVe~lmD---~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~ 420 (673)
-.-|..++|. ..+..+.+.|+| ..+|... +...+|| .. +|. .++|.++..|.|+ ..|||.
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vl-e~------~~~-~i~~~~~~~p~p~-~~RD~v 115 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQ-EC------NGE-TVVYWEVKYPFPM-SNRDYV 115 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEE-EE------TTE-EEEEEEECCCTTS-CCEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEe-cc------CCC-EEEEEEEEcCCCC-CCceEE
Confidence 3568999995 999999999999 5677776 5667777 43 232 4789999988886 999999
Q ss_pred EEEeeeeec-Cc--eEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccc
Q 005853 421 FLRFCKQHI-EG--VWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSS 497 (673)
Q Consensus 421 flRyckq~~-~g--~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~s 497 (673)
++|+++.++ +| .|+|+-.|++... .+....++|...+++|++|++.++|.|+||++-|++.. ..+|.- |++.
T Consensus 116 ~~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~ 190 (214)
T 1ln1_A 116 YLRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINW 190 (214)
T ss_dssp EEEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHH
T ss_pred EEEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHH
Confidence 999999875 66 5999999997542 22224789999999999999999999999999999987 445543 3444
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 005853 498 GMGFGAPKWVATLQRQCECL 517 (673)
Q Consensus 498 g~afGA~rWla~LqR~cerl 517 (673)
.+.-++..++..|+++|+.+
T Consensus 191 ~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 191 AAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHHTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHHHHHHhc
Confidence 55566777888888888743
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.85 E-value=8.8e-09 Score=106.08 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=94.8
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccc--cccceeeEEEEee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSP--LVPVRQAKFLRFC 425 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SP--Lvp~Re~~flRyc 425 (673)
|..++|...+..|.+.|+|.+...+=.+. +..++.++-| + +. .++| ++..++| ++++|||..|||.
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~-~~~~~vle~i-d--------~~-~ivY-~~~~p~~~~~v~~RDFV~lr~~ 158 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKH-YRSVELVQQV-D--------ED-DAIY-HVTSPALGGHTKPQDFVILASR 158 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTT-CCEEEEEEEE-E--------TT-EEEE-EEEECCCTTCSSCEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhh-ccEEEEEEEc-C--------CC-eEEE-EEecCCccCCCCCCEEEEEEEE
Confidence 78889999999999999998644333333 3447777777 2 22 4677 6777775 7999999999999
Q ss_pred eee-cCce-EEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeee
Q 005853 426 KQH-IEGV-WAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEY 482 (673)
Q Consensus 426 kq~-~~g~-w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~ 482 (673)
+.. .+|. ++|+-+|++... .+....++|...+|+||+|+++++|.|+||++-|++-
T Consensus 159 r~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp 216 (258)
T 3fo5_A 159 RKPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP 216 (258)
T ss_dssp ECCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG
T ss_pred EeccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC
Confidence 874 4774 999999988432 2222368999999999999999999999999988873
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.49 E-value=8.8e-07 Score=85.45 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=108.7
Q ss_pred eeecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEee
Q 005853 346 ASRETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFC 425 (673)
Q Consensus 346 asR~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyc 425 (673)
.=|..++|...+.++.+.|+|.+...+--|. +...+|| .. . ++ -.++|.++..+-| +..|||.++|+.
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vl-e~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~ 95 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELL-KA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTY 95 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEE-EE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEE-ee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEE
Confidence 4678899999999999999997654444333 5666777 54 1 12 3567888777765 789999999999
Q ss_pred eeecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHH
Q 005853 426 KQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPK 505 (673)
Q Consensus 426 kq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~r 505 (673)
+...+|...|+=.+ +. ...+....++|.+.+++|++|++ .+|.|+||++-|++..- .+|. -+++..+.-+.-.
T Consensus 96 ~~~~~g~~~i~~~~-~~-~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~ 168 (189)
T 3qsz_A 96 EKAGDGAITVRVEA-VP-DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFG 168 (189)
T ss_dssp EECTTSCEEEEEEE-CT-TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHH
T ss_pred EECCCCeEEEEEEc-CC-CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHH
Confidence 99878876554333 21 11122236899999999999999 99999999999998763 3433 3444555556667
Q ss_pred HHHHHHHHHHH
Q 005853 506 WVATLQRQCEC 516 (673)
Q Consensus 506 Wla~LqR~cer 516 (673)
.+..|+++|+.
T Consensus 169 ~l~~L~k~~~~ 179 (189)
T 3qsz_A 169 TLKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhh
Confidence 78888877763
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.35 E-value=1.9e-08 Score=73.84 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=18.8
Q ss_pred ceEEeecchhhhHHHHHHHHHH
Q 005853 136 KQIKFWFQNRRTQMKTQMERHE 157 (673)
Q Consensus 136 rQVkvWFQNRRak~Kr~~~~~e 157 (673)
+||+|||||||+|||+++.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999998776533
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.33 E-value=2.8e-06 Score=86.21 Aligned_cols=200 Identities=14% Similarity=0.233 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCeeecCCCCccccChHHHhhhCCCCCCCCCCCCceeeeecceeEE-echhHHHHHh
Q 005853 289 LIDLALTAMDELIKMAEA---DSPLWIKSLDGGRDVFNQEEYMRTFSPCIGMKPNGFVTEASRETGMVI-INSSALIETM 364 (673)
Q Consensus 289 ~~~lA~~Am~El~~la~~---~~plWi~~~~~~~e~Ln~~eY~~~fp~~~g~~~~g~~~EasR~~~~V~-~~~~~LVe~l 364 (673)
+.+++...+.|.+..+.. ++.-|-...+.+ +..-|.+..+. .|...-.=|..++|. ..+..+.+.|
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~----gv~vy~~~~~~------~g~~~~~~K~~~~~~~~~~~~v~~~l 93 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEG----EMKVYRREVEE------NGIVLDPLKATHAVKGVTGHEVCNYF 93 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEET----TEEEEEECCEE------TTEECCCEEEEEEEETCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCC----CEEEEEEEcCC------CCceeeeEEEEEEEcCCCHHHHHHHH
Confidence 455566666666666543 335796653221 01123332221 121111235556665 7789999999
Q ss_pred cCh---hhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeeec----C--ceEEE
Q 005853 365 MDA---NRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQHI----E--GVWAV 435 (673)
Q Consensus 365 mD~---~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~~----~--g~w~V 435 (673)
+|. .+|-.. +..++.++.| . .++ .++|..+..+.|+ ..|||.++|++++.. + +.|+|
T Consensus 94 ~d~~~r~~Wd~~----~~~~~vle~i-~-------~~~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 94 WNVDVRNDWETT----IENFHVVETL-A-------DNA-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HCGGGHHHHCCS----EEEEEEEEEE-E-------TTE-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred hCcchHhhhhhh----cceeEEEEEc-C-------CCC-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 995 466655 4556776666 2 122 7888888888885 889999999999883 3 59999
Q ss_pred EEEeccCCCCCCCCCccccccc---cCCcceEeeCCC--------CcceEEEEEeeeeccccccccccccccccchhhHH
Q 005853 436 VDVSIDTNREGLSADPFQTYRR---LPSGFVVQDVPN--------NYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAP 504 (673)
Q Consensus 436 vDvS~d~~~~~~~~~~~~~~~r---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~ 504 (673)
+..|++.-. .+....++|... +.+|++|++..+ +.|+||++-|++..- .+|.- +++.....+..
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~ 234 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYP 234 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhcccc
Confidence 999998542 122236789884 678999998733 579999999998764 34432 34445556677
Q ss_pred HHHHHHHHHHHHH
Q 005853 505 KWVATLQRQCECL 517 (673)
Q Consensus 505 rWla~LqR~cerl 517 (673)
..+..|+.+++..
T Consensus 235 ~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 235 KFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888887744
No 88
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=94.29 E-value=0.25 Score=43.20 Aligned_cols=140 Identities=9% Similarity=-0.038 Sum_probs=78.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+..|...+..+-+.|.|.+.|.+-+|.+. .++++ ..+. +|..--+. +.. + +.+.-+..++....
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~----~~~~~-~~~~----~g~~~~~~--~~~--~--g~~~~~~~~~~~~~ 70 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVE----SLEVV-AREG----ARTRSRWV--AVA--M--GKKVRWLEEEEWDD 70 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEE----EEEEE-EEET----TEEEEEEE--EEE--T--TEEEEEEEEEEEET
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhccccc----EEEEE-EeCC----CccEEEEE--EEe--C--CceEEEEEEEEEcC
Confidence 345667778899999999999999988753 34555 3221 23211111 111 1 22333445554432
Q ss_pred cCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHHH
Q 005853 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVA 508 (673)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWla 508 (673)
++...+. . .+++... .+.. -.-+.+.++| |+|+|..+.+.....+..++.+++..-+.=+.++.++
T Consensus 71 ~~~~i~~-~-~~~g~~~-----~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (147)
T 2d4r_A 71 ENLRNRF-F-SPEGDFD-----RYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLK 136 (147)
T ss_dssp TTTEEEE-E-EEEESCS-----EEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEE-E-eccCChh-----heEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322221 1 1221100 1111 1335677888 9999998888764334455555554444566788888
Q ss_pred HHHHHHHHH
Q 005853 509 TLQRQCECL 517 (673)
Q Consensus 509 ~LqR~cerl 517 (673)
.|.+.+|..
T Consensus 137 ~lk~~~e~~ 145 (147)
T 2d4r_A 137 GLEERVLAA 145 (147)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888888864
No 89
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=93.50 E-value=0.18 Score=49.70 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=57.9
Q ss_pred hhhhHHHHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHh
Q 005853 535 PIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM 614 (673)
Q Consensus 535 ~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL 614 (673)
.......+++|+..+..|-.-+.. ..+|.... . .++|+|..+...+ .+ |.++-| ..-++++|+.||++|
T Consensus 18 ~~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~-~--~~gv~v~~~~~~~---~~-~~~~k~--~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 18 LYFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR-E--GNGVSVSWRPSVE---FP-GNLYRG--EGIVYGTLEEVWDCV 86 (231)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE-C--CSSEEEEEEECSS---SS-SEEEEE--EEEESSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE-e--CCCEEEEEEccCC---CC-CcEEEE--EEEECCCHHHHHHHH
Confidence 334557999999999888876533 47899876 2 5789999887632 22 344444 444599999999999
Q ss_pred --hCcccchhhhhhc
Q 005853 615 --RDERMRSEWDILS 627 (673)
Q Consensus 615 --rd~~~R~eWd~l~ 627 (673)
.|...|.+||...
T Consensus 87 ~~~d~~~r~~Wd~~~ 101 (231)
T 2r55_A 87 KPAVGGLRVKWDENV 101 (231)
T ss_dssp CC--CCSHHHHCTTC
T ss_pred HhhCcchhhhhcccc
Confidence 8999999999743
No 90
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=88.68 E-value=0.44 Score=45.26 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 562 RKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 562 ~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
++|.... . .++|+|..++.. |.+ +..-++...++.||+.||++|.|...|.+||-.+
T Consensus 3 ~~W~~~~-~--~~gv~v~~~~~~---~~~---~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~ 59 (189)
T 3qsz_A 3 DGWSLAK-D--AEGIKVYVRNVE---GSP---LREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV 59 (189)
T ss_dssp CCCEEEE-E--ETTEEEEEECCT---TCS---SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE
T ss_pred CCCEEEE-c--CCCEEEEEEeCC---CCC---eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc
Confidence 5798776 2 578999998862 221 2245566777899999999999999999999654
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=88.51 E-value=1.3 Score=43.30 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHh-hCc
Q 005853 539 KSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFM-RDE 617 (673)
Q Consensus 539 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~ 617 (673)
..-.++++.-+..+..-+. ...+|.... ...++|.|..++. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~~--~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKES--QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEEE--ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEee--ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 3445555555555544443 356899873 1247788999884 332 4454 44444599999999999 487
Q ss_pred ccchhhhhhc
Q 005853 618 RMRSEWDILS 627 (673)
Q Consensus 618 ~~R~eWd~l~ 627 (673)
..|.+||...
T Consensus 79 ~~r~~Wd~~~ 88 (221)
T 3p0l_A 79 EAMGEWNPNV 88 (221)
T ss_dssp GGTTTSCTTC
T ss_pred chhhhcCcch
Confidence 8999999653
No 92
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=88.23 E-value=0.33 Score=46.90 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=45.6
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeeccc-CChHHHHHHhhCcccchhhhhhc
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLP-MTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
...+|.... . .++|+|..++.. +. .+..-++..-++ +||+.||++|.|...|.+||...
T Consensus 26 ~~~~W~~~~-~--~~~v~v~~~~~~---~~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~ 85 (214)
T 1ln1_A 26 AGADWQLLV-E--TSGISIYRLLDK---KT---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV 85 (214)
T ss_dssp TTTTCEEEE-E--ETTEEEEEEEET---TT---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE
T ss_pred CCCCcEEEE-E--CCCeEEEEeccC---CC---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 456899876 3 468999988752 22 244667777898 99999999999999999999653
No 93
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=87.97 E-value=0.91 Score=44.63 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccc
Q 005853 541 MLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMR 620 (673)
Q Consensus 541 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R 620 (673)
+.+.+...+..|.... ..+|.... . .++|+|..+...+. .|-+. ++..-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~~-~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVAK-K--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEEE-E--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEEE-E--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444443322 56898765 2 47899999865322 23344 44445599999999999999999
Q ss_pred hhhhhh
Q 005853 621 SEWDIL 626 (673)
Q Consensus 621 ~eWd~l 626 (673)
.+||..
T Consensus 93 ~~Wd~~ 98 (224)
T 1jss_A 93 LDWDRL 98 (224)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 999964
No 94
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=87.82 E-value=0.62 Score=47.61 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCC-CC-C-ChhhhHHHHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEE
Q 005853 503 APKWVATLQRQCECLAVLMSSTITVQDQ-SG-I-SPIGRKSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVL 579 (673)
Q Consensus 503 A~rWla~LqR~cerla~~~~~~~~~~d~-~~-i-~~~Gr~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~ 579 (673)
-||.-.++.|-==||.-- .|-+... .+ . .+.-+.+=+.|+.-.+.+...- ....+|.... . .++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~~-~--~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLSS-E--ISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEEE-E--ETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEEe-c--CCCeEEE
Confidence 456655555554444331 2322222 21 1 3355566677776666554422 2467899876 2 5789999
Q ss_pred EecCCCCCCCCCceEEEEEEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 580 TRKNVNDPGEPPGVVLCAATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 580 ~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
++.. +| .++-++..-+++||+.||++|.|...|.+||..
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~ 119 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKH 119 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhh
Confidence 8642 22 345567777899999999999999999999964
No 95
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.19 E-value=0.17 Score=42.01 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecch
Q 005853 106 IQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144 (673)
Q Consensus 106 l~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 144 (673)
.+.|+++|...+.+.......|+.+.+|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999943
No 96
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.70 E-value=0.17 Score=43.27 Aligned_cols=42 Identities=10% Similarity=0.297 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCcceEEeecch
Q 005853 99 HRHTPHQIQELESFFKEC-PHPDEKQRSELSRRLGLESKQIKFWFQN 144 (673)
Q Consensus 99 trfT~~Ql~~LE~~F~~~-~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 144 (673)
.+||.++....-..+... .. ...++|+++|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 468888776555555322 21 2568999999999999999753
No 97
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=84.87 E-value=8.3 Score=35.92 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=78.3
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq 427 (673)
..+.+|...+..+-+.+-|.+.|-+.+|.+. .++++ ..+. +. +.+++.+.-. ..++-+.-|+..+
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~----~~~v~-~~~~-----~~---~~~~~~~~~~--G~~~~~~s~~~~~ 72 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTE----KVEIL-EEGQ-----GY---QVVRLHVDVA--GEINTWTSRRDLD 72 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEE----EEEEE-EEET-----TE---EEEEEEEEET--TEEEEEEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccc----eEEEE-ecCC-----CE---EEEEEEEecC--CEEEEEEEEEEEe
Confidence 4556777788999999999999999988854 45555 3211 11 3334433212 2233344444333
Q ss_pred ecCceEEEEEEeccCCCCCCCCCccccccccCCcce-EeeCCCCcceEEEEEeeeecccccccccccccccc--------
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFV-VQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSG-------- 498 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGcl-Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg-------- 498 (673)
-++.. + .-.+++. +++ |. .+ .|.. +.+.++|.|+|+|.-+.++....+..++.++..-.
T Consensus 73 ~~~~~-i-~~~~~~~--~gp----f~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~ 140 (172)
T 3tfz_A 73 PARRV-I-AYRQLET--API----VG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEA 140 (172)
T ss_dssp TTTTE-E-EEEEEEC--CTT----EE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHH
T ss_pred CCCCE-E-EEEEeeC--CCC----hh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHH
Confidence 22222 1 1111210 111 10 00 1222 56667789999999999988777777766554211
Q ss_pred -chhhHHHHHHHHHHHHHHHHH
Q 005853 499 -MGFGAPKWVATLQRQCECLAV 519 (673)
Q Consensus 499 -~afGA~rWla~LqR~cerla~ 519 (673)
+.=+.+.-|+.|.+.+|+.+.
T Consensus 141 ~l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 141 VVERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHh
Confidence 111223356666666776554
No 98
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=83.02 E-value=9.2 Score=35.72 Aligned_cols=110 Identities=7% Similarity=0.049 Sum_probs=63.6
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehh--cccccccceeeEEEEee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQ--VLSPLVPVRQAKFLRFC 425 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~--~~SPLvp~Re~~flRyc 425 (673)
..+.+|.-.+.++-+++-|.++|-+.||.++. .+|+ +.+ |. .+.+.|. +-.- - .++-++.|+.
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~----~~vl-~~~------~~--~~~~rl~~~~~~~-G-~~~~~ts~~~ 70 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYAS----VEVL-GRD------DD--KVTFRLTMHPDAD-G-KVWSWVSERV 70 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEE----EEEE-EEC------SS--EEEEEEEECCCTT-S-CCCEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceE----EEEE-ecC------CC--EEEEEEEEEeccC-c-eEEEEEEEEE
Confidence 45667777889999999999999999987554 5666 432 21 1333332 2221 1 2444455664
Q ss_pred eeecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccc
Q 005853 426 KQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDES 485 (673)
Q Consensus 426 kq~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 485 (673)
.. .++..+ +..+ ..+++ | +.+=...-+.+.++ +|+|+|.-+.++++.
T Consensus 71 ~d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 71 AD-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp EE-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred Ec-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 33 223222 2221 11222 1 22333445677777 499999999999765
No 99
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=80.29 E-value=16 Score=34.52 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=75.6
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq 427 (673)
..+.+|.-.+..+-+.+.|.++|-+.||.++. .+++ +.+ + +. ..+...+++..--. .++|..-|.+.
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~----~~~~-~~~--~---~~-~~~~l~~~~~~~G~-~~~~ts~~~~d- 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAE----AEIL-RQD--G---DG-FDFRLKTRPDANGR-VWEWVSHRVPD- 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEE----EEEE-EEE--T---TE-EEEEEEECCCTTSC-CCEEEEEEEEE-
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeE----EEEE-ecC--C---CE-EEEEEEEEecCCCe-EEEEEEEEEEc-
Confidence 34566777888999999999999999998655 4455 321 1 11 11112222322221 22333333221
Q ss_pred ecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHH
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWl 507 (673)
.++..+.... ..+++ | +.+=...-+.+.++| |+|+|.-+.++++...-.. +.+...+.=..+..|
T Consensus 73 -~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p~~~--~~~~~av~~~~~~~L 137 (169)
T 3tvq_A 73 -KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAPFDN--AHMTAHLNTTTRANM 137 (169)
T ss_dssp -GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCcccH--HHHHHHHHhhHHHHH
Confidence 2222221111 11111 1 122234557788888 9999999999875521111 111111111224468
Q ss_pred HHHHHHHHHHHHh
Q 005853 508 ATLQRQCECLAVL 520 (673)
Q Consensus 508 a~LqR~cerla~~ 520 (673)
+.|.+.+|+.+..
T Consensus 138 ~~LK~~aE~~~~~ 150 (169)
T 3tvq_A 138 ERIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhh
Confidence 8888888887663
No 100
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=79.63 E-value=2.4 Score=42.29 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEE-EEEEeeccc-CChHHHHHHhhCcc
Q 005853 541 MLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVL-CAATTVWLP-MTRQRLFDFMRDER 618 (673)
Q Consensus 541 ll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~ 618 (673)
+-++.+..+..+-..+ ....+|.... . .++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~-~--~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVV-E--EGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEE-E--ETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEE-e--CCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444333 2346899776 2 5789999988532 2 3221 123334456 89999999999999
Q ss_pred cchhhhhh
Q 005853 619 MRSEWDIL 626 (673)
Q Consensus 619 ~R~eWd~l 626 (673)
.|.+||..
T Consensus 98 ~r~~Wd~~ 105 (255)
T 2e3n_A 98 VRNDWETT 105 (255)
T ss_dssp GHHHHCCS
T ss_pred hHhhhhhh
Confidence 99999954
No 101
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=76.54 E-value=4.4 Score=36.49 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=79.2
Q ss_pred ecceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeee
Q 005853 348 RETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQ 427 (673)
Q Consensus 348 R~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq 427 (673)
+.+..|...+..+-+.+.|.+.|-+.+|.+.. ++|+ +.+..| +|. -+.+++.+- .-+.++-+..|+..+
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~----~~v~-~~~~~~--g~~--~~~~~~~~~--~~~~~~~~~~~v~~~ 73 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITG----MRTW-NGRVDG--AVS--TVDAEAQVG--FSFLREKFATRVRRD 73 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCC----CCEE-EEEEET--TEE--EEEEEEECS--TTSSCCEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCe----eEEE-EecCCC--CCc--eEEEEEEEE--ecceeEEEEEEEEEc
Confidence 34566777889999999999999999888755 3455 322211 011 144555442 234566677787753
Q ss_pred ecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccccccchhhHHHHH
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWV 507 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afGA~rWl 507 (673)
-.+ ..|.-.++++... .+...++ +++.++| |+|++.-+.|+... ++..+...-+.-.+++-+
T Consensus 74 ~~~--~~i~~~~~~G~f~-----~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~ 135 (148)
T 1t17_A 74 KDA--RSIDVSLLYGPFK-----RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLI 135 (148)
T ss_dssp TTT--CEEEEEESSTTSS-----CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHH
T ss_pred CCC--cEEEEEECCCChh-----ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHH
Confidence 333 2233333443110 1112232 4567778 99999988887522 233333222233456667
Q ss_pred HHHHHHHHHH
Q 005853 508 ATLQRQCECL 517 (673)
Q Consensus 508 a~LqR~cerl 517 (673)
.++.+.|+.+
T Consensus 136 ~~f~~r~~~~ 145 (148)
T 1t17_A 136 ACFEARAQQL 145 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666643
No 102
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=75.91 E-value=16 Score=33.64 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=68.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+.+|.-.+..+-+.+.|.++|...||..+.- +-. . +|..+.+.+++.+-. ...|+-+..||...-
T Consensus 11 ~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~-~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 11 RDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDL-G-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEE-E-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEc-C-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 45677788999999999999999999987763 112 1 233344445665433 234888889987654
Q ss_pred cCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeec
Q 005853 429 IEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYD 483 (673)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 483 (673)
++. -+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|..
T Consensus 77 ~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~ 119 (161)
T 3p9v_A 77 EAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT 119 (161)
T ss_dssp TTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE
T ss_pred CCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc
Confidence 333 22 22221 111 10 1111123457788888999999888876
No 103
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=74.92 E-value=4 Score=39.92 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHHH-HHhhCc
Q 005853 539 KSMLKLAQRMTYNFCSGVCASSVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRLF-DFMRDE 617 (673)
Q Consensus 539 ~sll~La~RM~~~F~~~v~~s~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf-~fLrd~ 617 (673)
+.-++.++.....|-.-+. ...+|.... . ..++++|..+...+ .|.+.-+. .-+++||+.|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~-~-~~~g~~vy~~~~~~-----~g~~~k~~--~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEK-N-NEYGDTVYTIEVPF-----HGKTFILK--TFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEE-E-CTTCCEEEEEEETT-----TEEEEEEE--EEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEE-e-cCCCCEEEEEecCC-----CCceEEEE--EEecCCHHHHHHHHHhCc
Confidence 3444444444444443332 245899775 2 23578898886521 23444443 44599999999 999999
Q ss_pred ccchhhhhhc
Q 005853 618 RMRSEWDILS 627 (673)
Q Consensus 618 ~~R~eWd~l~ 627 (673)
..|.+||...
T Consensus 90 ~~r~~Wd~~~ 99 (229)
T 1em2_A 90 ERMVLWNKTV 99 (229)
T ss_dssp HHHTTTCTTE
T ss_pred cchhhccccc
Confidence 9999999653
No 104
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.06 E-value=2.5 Score=43.02 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 161 LRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 161 l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
+++||+.|+.||..+++.+ .+.++|+.||++|++.|.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~-------------------~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLE-------------------SEVADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhc
Confidence 4556666666666666544 445568889999988754
No 105
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.04 E-value=9.5 Score=32.44 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=15.7
Q ss_pred hhhhhhhhhHHHHHHhhhhhhh
Q 005853 201 LQQLRIENARLKDELGRICILA 222 (673)
Q Consensus 201 ~q~L~~eNa~Lk~El~r~~~~~ 222 (673)
...|..||++|++|.......+
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999986443333
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=63.12 E-value=9.5 Score=33.06 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=43.6
Q ss_pred CCCcceEEeecchhhhHHHHHHHHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHH
Q 005853 132 GLESKQIKFWFQNRRTQMKTQMERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARL 211 (673)
Q Consensus 132 gLs~rQVkvWFQNRRak~Kr~~~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~L 211 (673)
||+..+|.-|=|-||+-.-|.........-..+...|..++..+. .+.++|+.||+++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~----------------------~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLI----------------------QQVEQLKQEVSRL 74 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 677777776666666544444334344444455566666766665 4566789999999
Q ss_pred HHHHhhhhhh
Q 005853 212 KDELGRICIL 221 (673)
Q Consensus 212 k~El~r~~~~ 221 (673)
+.|++....-
T Consensus 75 ~~e~d~~k~k 84 (90)
T 2wt7_B 75 ARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998776543
No 107
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.93 E-value=27 Score=27.52 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHH
Q 005853 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDEL 215 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El 215 (673)
+......+..+.+.|..+|..|... .+.|+.|++.|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~----------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE----------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 4455677788888888888888743 346778888887764
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.38 E-value=30 Score=27.66 Aligned_cols=41 Identities=34% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHh
Q 005853 154 ERHENIILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELG 216 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~ 216 (673)
++.....+..+.+.|..+|..|...+ ..|..|++.||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 45566778888888999988888544 357888888887553
No 109
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=53.10 E-value=17 Score=36.04 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=39.1
Q ss_pred CCCCceeeecCCCCcceEEEEecCCCCCCCCCceEEEEEEeecccCChHHH-HHHhhCcccchhhhhhcCC
Q 005853 560 SVRKWDKLCVGNVGEDVRVLTRKNVNDPGEPPGVVLCAATTVWLPMTRQRL-FDFMRDERMRSEWDILSNG 629 (673)
Q Consensus 560 ~~~~W~~l~~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~v-f~fLrd~~~R~eWd~l~~g 629 (673)
...+|.... ..++|+|.+++.. +|.+ +..-++..-++.+|+.+ +++|.| |.+||..+-.
T Consensus 48 ~~~gW~~~~---~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~ 107 (237)
T 2pso_A 48 KFKGWVTCS---STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQ 107 (237)
T ss_dssp HCCSCEEEC---CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCC
T ss_pred CCCCCEEEe---cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhce
Confidence 345798775 2578999999852 2333 22345666778777665 567777 9999975433
No 110
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=49.97 E-value=11 Score=35.33 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=27.6
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
+...|+-+..||+.||+|++|...-.+|..
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999974
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=48.82 E-value=39 Score=27.81 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=9.8
Q ss_pred hhhhhhhhhhHHHHHHhh
Q 005853 200 ELQQLRIENARLKDELGR 217 (673)
Q Consensus 200 e~q~L~~eNa~Lk~El~r 217 (673)
+.+.|+.++..|..|+..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666666543
No 112
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.63 E-value=16 Score=30.40 Aligned_cols=45 Identities=13% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeec
Q 005853 93 PRKKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF 142 (673)
Q Consensus 93 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWF 142 (673)
++|+.+..|+.++....-+.+... . ...++|+++|+++..|..|.
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 334556679998865555556432 2 25688999999999998885
No 113
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.42 E-value=9 Score=25.42 Aligned_cols=17 Identities=41% Similarity=0.728 Sum_probs=13.7
Q ss_pred hhhhhhhhHHHHHHhhh
Q 005853 202 QQLRIENARLKDELGRI 218 (673)
Q Consensus 202 q~L~~eNa~Lk~El~r~ 218 (673)
++|+..|++||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 46888999999997643
No 114
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=46.86 E-value=5.6 Score=35.54 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhHHHHHHhhhhh
Q 005853 199 YELQQLRIENARLKDELGRICI 220 (673)
Q Consensus 199 ~e~q~L~~eNa~Lk~El~r~~~ 220 (673)
-+..+|..||+.|+.|++.+..
T Consensus 72 ~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 72 QEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp STTTTTTSTTSHHHHTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999887654
No 115
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.19 E-value=0.68 Score=43.78 Aligned_cols=30 Identities=3% Similarity=-0.108 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCH
Q 005853 92 PPRKKKYHRHTPHQIQELESFFKECPHPDE 121 (673)
Q Consensus 92 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~ 121 (673)
.+.||.|+.||.+|++.|++.|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 355788899999999999999999999975
No 116
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=45.77 E-value=1.6e+02 Score=26.10 Aligned_cols=118 Identities=9% Similarity=0.094 Sum_probs=61.3
Q ss_pred ceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEE--EEeeee
Q 005853 350 TGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKF--LRFCKQ 427 (673)
Q Consensus 350 ~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~f--lRyckq 427 (673)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++ . +|.. ...+.+ ++-+.+.-+. ++|...
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~-~-------~~~~---~~~~~~--~~g~~~~~~~~~~~~~~~ 70 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELI-G-------EDKY---KADLQI--GIAAVKGKYDAIIEVTDI 70 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEE-E-------TTEE---EEEEEE--CCGGGCEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEe-C-------CCeE---EEEEEE--EeeeEEEEEEEEEEEEec
Confidence 4456778889999999999999988874 455665 3 1221 111211 1112222222 234333
Q ss_pred ecCceEEEEEEeccCCCCCCCCCccccccccCCcceEeeCCCCcceEEEEEeeeeccccccccccccc
Q 005853 428 HIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKVTWIEHAEYDESIVHHLCRPLL 495 (673)
Q Consensus 428 ~~~g~w~VvDvS~d~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 495 (673)
-....|++.-..-+. . ++.. .---+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 71 ~~~~~~~~~~~~~~~---~----~~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 71 KPPYHYKLLVNGEGG---P----GFVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp ETTTEEEEEEEEEET---T----EEEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCCcEEEEEEEecCC---C----ccEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 444555544333221 0 1111 1111335666778899999877776432 233444444
No 117
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.59 E-value=37 Score=29.09 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 005853 159 IILRQEHDKLRAENEMLK 176 (673)
Q Consensus 159 ~~l~~e~~~l~~en~~l~ 176 (673)
..+..+.+.|..||..|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr 56 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQ 56 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555544
No 118
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=44.17 E-value=12 Score=32.93 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhh
Q 005853 97 KYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147 (673)
Q Consensus 97 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 147 (673)
+|++||.++...+-..+..+..+. ..++|+++|+++..|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 466799999877777775555544 236899999999999988755443
No 119
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=41.92 E-value=12 Score=32.12 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=25.3
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
...+..++.||+.||++|.|.....+|.-
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 34678889999999999999999999963
No 120
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.16 E-value=7.8 Score=29.89 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecc
Q 005853 98 YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQ 143 (673)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQ 143 (673)
|..||.+........+... ........++|+++|+++..|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3458988877775555433 22111256899999999999999964
No 121
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.29 E-value=46 Score=27.93 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=7.2
Q ss_pred hhhhHHHHHHhhhhhh
Q 005853 206 IENARLKDELGRICIL 221 (673)
Q Consensus 206 ~eNa~Lk~El~r~~~~ 221 (673)
.+...|+.|+..+..+
T Consensus 57 ~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 57 KKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555444443
No 122
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.28 E-value=35 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHH
Q 005853 154 ERHENIILRQEHDKLRAENEMLK 176 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ 176 (673)
+......+..+.+.|..+|..|.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666667777766665
No 123
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=36.32 E-value=13 Score=33.57 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=25.2
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
...++.++.||++||++|.|.....+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 124
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=36.09 E-value=15 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=26.2
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
....+..++.||++||++|.|.....+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678889999999999999999999996
No 125
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=34.06 E-value=22 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=26.6
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDI 625 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 625 (673)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999964
No 126
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=33.81 E-value=20 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.0
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhhhhcC
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWDILSN 628 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~ 628 (673)
...|..++.||+.||+++.|-....+|---+.
T Consensus 4 ~~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~ 35 (148)
T 1t17_A 4 HVVTKVLPYTPDQLFELVGDVDAYPKFVPWIT 35 (148)
T ss_dssp EEEEEEESSCTHHHHHHHTTTTCCSSCCSSCC
T ss_pred EEEEEEecCCHHHHHHHHHHHhhHHhhCCCcC
Confidence 35688899999999999999999999964443
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.77 E-value=28 Score=30.35 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q 005853 181 NPTCNNCGGPAVP 193 (673)
Q Consensus 181 ~~~c~~Cg~p~~~ 193 (673)
...||.||.+..+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5579999987653
No 128
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=31.47 E-value=29 Score=30.15 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=25.1
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
....+..++.||++||++|-|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3457788899999999999999999999
No 129
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=30.22 E-value=31 Score=30.28 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=24.3
Q ss_pred EEeecccCChHHHHHHhhCcccchhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
..+..++.||++||+.|-|.....+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 130
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=29.90 E-value=11 Score=27.01 Aligned_cols=43 Identities=12% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhh
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRT 147 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRa 147 (673)
.++.++...+...+... . ...++|+.+|++..-|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 36677766666666543 2 3568999999999999988865443
No 131
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=29.70 E-value=31 Score=31.95 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=27.2
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhhh
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDIL 626 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 626 (673)
....|+.++.||+.||+++.|-....+|--.
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P~ 36 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIFPP 36 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHCSS
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhCcc
Confidence 5668899999999999999999999999643
No 132
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.02 E-value=29 Score=28.86 Aligned_cols=48 Identities=6% Similarity=0.141 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQ 152 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~ 152 (673)
.++..|...|...|-... .-.++|+.+|+++..|+.+...-|.+.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 377778888877653331 356899999999999998766555555543
No 133
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=28.20 E-value=1.2e+02 Score=28.10 Aligned_cols=123 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred cceeEEechhHHHHHhcChhhHhhhcccccccceEeeEeeCCCCCCCCCCeeeeeeeehhcccccccceeeEEEEeeeee
Q 005853 349 ETGMVIINSSALIETMMDANRWAEMFPCMIARSATTDVLLSPSVTGTKNGALQVMVAEFQVLSPLVPVRQAKFLRFCKQH 428 (673)
Q Consensus 349 ~~~~V~~~~~~LVe~lmD~~~W~~~Fp~iV~~a~t~~vi~s~g~~g~~~g~lqlm~aEl~~~SPLvp~Re~~flRyckq~ 428 (673)
.+..|...+.++-++|.|-..| +-+|.++..+.. ..|.+++.-|++..+ - -..+| .++.|-...
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~-----~eg~~~~~vGsvR~~-------g--g~v~E-rl~~~D~~~ 69 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKK-----VGGGGGYSVGARRLL-------N--GEFLD-TLIAYSEIE 69 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEE-----ESSCCTTCTTCEEEE-------T--TTEEE-EEEEEETTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEE-----EecCCCCCCCCEEEE-------C--CEEEE-EEEEEcCCC
Q ss_pred cCceEEEEEEeccCCCCCCCCCcccc-----ccccCCcceEeeCC-CCcceEEEEEeeeeccccccccccccccccch
Q 005853 429 IEGVWAVVDVSIDTNREGLSADPFQT-----YRRLPSGFVVQDVP-NNYSKVTWIEHAEYDESIVHHLCRPLLSSGMG 500 (673)
Q Consensus 429 ~~g~w~VvDvS~d~~~~~~~~~~~~~-----~~r~PSGclIq~~~-nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~a 500 (673)
--=+|-|++ +. .. .+..=+=.-+.+.+ +|.|.|+|--.++.++..+....+.+|..|+.
T Consensus 70 ~~~sY~ii~--------g~-----l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~~~~~~~~~~~~~~~L~ 134 (160)
T 3p51_A 70 RRIMYSMDE--------GP-----SPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWESASTEAVEYMNTVYRSLLA 134 (160)
T ss_dssp TEEEEEEEE--------CS-----TTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEec--------CC-----CcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEeCHHHHHHHHHHHHHHHHH
No 134
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=27.63 E-value=32 Score=30.61 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=24.4
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
-..+.-++.||++||+.|-|..+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456778999999999999999999993
No 135
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.41 E-value=1.4e+02 Score=23.54 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=16.8
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHhh
Q 005853 154 ERHENIILRQEHDKLRAENEMLKDA 178 (673)
Q Consensus 154 ~~~e~~~l~~e~~~l~~en~~l~ea 178 (673)
+......|..+.+.|..+|..|...
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777643
No 136
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.10 E-value=1.2e+02 Score=22.68 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhHHHHHHhhhhh
Q 005853 199 YELQQLRIENARLKDELGRICI 220 (673)
Q Consensus 199 ~e~q~L~~eNa~Lk~El~r~~~ 220 (673)
.++|.|..--+.|++|+.|+..
T Consensus 24 rdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 24 RDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHH
Confidence 3455555556677777777644
No 137
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.88 E-value=86 Score=27.52 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHh----------hcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHH
Q 005853 151 TQMERHENIILRQEHDKLRAENEMLKD----------AMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDE 214 (673)
Q Consensus 151 r~~~~~e~~~l~~e~~~l~~en~~l~e----------a~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~E 214 (673)
|+..-+++-.+....+.+..||..++. ++. .+..+|+.||.+|++|
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe------------------~everL~~ENq~L~~e 87 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELE------------------LELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH------------------HHHHHHHHHHHHHHHH
No 138
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=24.60 E-value=48 Score=29.55 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=24.6
Q ss_pred EEEeecccCChHHHHHHhhCcccchhhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
...++-++.||++||++|.|-....+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567888999999999999998888996
No 139
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=24.54 E-value=3.4e+02 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.5
Q ss_pred eeEEechhHHHHHhcChhhHhhhcccc
Q 005853 351 GMVIINSSALIETMMDANRWAEMFPCM 377 (673)
Q Consensus 351 ~~V~~~~~~LVe~lmD~~~W~~~Fp~i 377 (673)
..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 19 ~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 19 FEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 445567788999999999999999975
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.47 E-value=27 Score=24.41 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecch
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQN 144 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQN 144 (673)
.++.++...+...+... + ...++|+.+|++..-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777775555556433 2 2568999999999988888643
No 141
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.31 E-value=1.1e+02 Score=23.74 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=26.8
Q ss_pred HHHHhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhhhhhhhhhhHHHHHHhhhh
Q 005853 160 ILRQEHDKLRAENEMLKDAMKNPTCNNCGGPAVPGSVSNYELQQLRIENARLKDELGRIC 219 (673)
Q Consensus 160 ~l~~e~~~l~~en~~l~ea~~~~~c~~Cg~p~~~~~~~~~e~q~L~~eNa~Lk~El~r~~ 219 (673)
.++.++..|.+.|..|.++++ .-+.|-..|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~----------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK----------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhh
Confidence 456667777777777776553 35677788888888763
No 142
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.91 E-value=97 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCcc
Q 005853 98 YHRHTPHQIQELESFFKE-----CPHPDEKQRSELSRRLGLESK 136 (673)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~LgLs~r 136 (673)
|..+|.+|+..|...|.. +-+.+..+-..+-+.+|..+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 456999999999999954 568889888888888988764
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.13 E-value=60 Score=28.53 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKTQM 153 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr~~ 153 (673)
.+++.|...+...|.... .-.++|+.+|+++.-|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888754331 2578999999999999998877666666543
No 144
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.86 E-value=47 Score=23.53 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHhhhhhhhh
Q 005853 203 QLRIENARLKDELGRICILAN 223 (673)
Q Consensus 203 ~L~~eNa~Lk~El~r~~~~~~ 223 (673)
.|..+|..|++|+.|+..++.
T Consensus 11 eLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 11 ELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 688999999999999987753
No 145
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=22.69 E-value=32 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=23.2
Q ss_pred EeecccCChHHHHHHhhCcccchhhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45678999999999999999999994
No 146
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=22.45 E-value=33 Score=30.25 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEeecccCChHHHHHHhhCcccchhhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEWD 624 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 624 (673)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 467788999999999999999999995
No 147
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=22.28 E-value=47 Score=31.16 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=27.8
Q ss_pred EEEEeecccCChHHHHHHhhCcccchhhhhhc
Q 005853 596 CAATTVWLPMTRQRLFDFMRDERMRSEWDILS 627 (673)
Q Consensus 596 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 627 (673)
....|+.++.||+.||+++.|-....+|---+
T Consensus 4 ~v~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~ 35 (169)
T 3tvq_A 4 RTDNSIVVNAPFELVWDVTNDIEAWPELFSEY 35 (169)
T ss_dssp EEEEEEEESSCHHHHHHHHTCGGGHHHHCTTE
T ss_pred eEEEEEEecCCHHHHHHHHHhhhHHHHHHhhe
Confidence 35678999999999999999999999997543
No 148
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=22.19 E-value=35 Score=30.75 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=24.3
Q ss_pred EEEeecccCChHHHHHHhhCcccchhh
Q 005853 597 AATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 597 A~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
...+..++.||++||++|-|.....+|
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W 38 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKW 38 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHh
Confidence 346778899999999999999999999
No 149
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.76 E-value=33 Score=28.06 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhh
Q 005853 98 YHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRR 146 (673)
Q Consensus 98 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRR 146 (673)
-..+|+.|.+.|...++- ..-.++|+.+|+++..|+.+.++-+
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346999999999885432 2356899999999999886654333
No 150
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=21.43 E-value=35 Score=30.15 Aligned_cols=26 Identities=4% Similarity=0.144 Sum_probs=23.7
Q ss_pred EEeecccCChHHHHHHhhCcccchhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
..+.-++.||++||++|-|.....+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45677899999999999999999999
No 151
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.32 E-value=49 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCcceEEeecchhhhHHHH
Q 005853 100 RHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMKT 151 (673)
Q Consensus 100 rfT~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~LgLs~rQVkvWFQNRRak~Kr 151 (673)
.+++.|...+. .|-. ...-.++|+.+|+++..|+.+.+.-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777777777 3322 1235789999999999998776554444443
No 152
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=20.58 E-value=55 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.1
Q ss_pred eEEEEEEeecccCChHHHHHHhhCccc
Q 005853 593 VVLCAATTVWLPMTRQRLFDFMRDERM 619 (673)
Q Consensus 593 ~vl~A~tS~wLpv~p~~vf~fLrd~~~ 619 (673)
+-+....|+.++.||+.||+++.|-..
T Consensus 5 ~~i~v~~s~~I~ap~e~v~~lv~Dve~ 31 (161)
T 3p9v_A 5 VSIELNRDLEIPASYDEVFDLLADVPK 31 (161)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHTCHHH
T ss_pred EEEEEEEEEEEcCCHHHHHHHHhChhh
Confidence 456778899999999999999999888
No 153
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=20.42 E-value=39 Score=30.21 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=23.0
Q ss_pred EeecccCChHHHHHHhhCcccchhh
Q 005853 599 TTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 599 tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
.+.-++.||++||+.|-|.....+|
T Consensus 6 ~~~~i~Ap~e~Vw~altdpe~~~~W 30 (144)
T 2l8o_A 6 VEVTVYAAIEKVWKYWNEPAHIMKW 30 (144)
T ss_dssp EEEEECSCHHHHHHHHHCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHCCHHHHhhc
Confidence 5667899999999999999999999
No 154
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=20.19 E-value=39 Score=30.20 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=23.6
Q ss_pred EEeecccCChHHHHHHhhCcccchhh
Q 005853 598 ATTVWLPMTRQRLFDFMRDERMRSEW 623 (673)
Q Consensus 598 ~tS~wLpv~p~~vf~fLrd~~~R~eW 623 (673)
..+..++.||++||+.|-|.....+|
T Consensus 4 ~~~~~i~Ap~e~Vw~altdp~~~~~W 29 (144)
T 2lgh_A 4 SIEAHIEQEIEAVWWAWNDPDCIARW 29 (144)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHTTS
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcc
Confidence 45677899999999999999999999
Done!