BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005854
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 461 SDYSCNGRHVFTHTRELERPLVGSILQS 488
+DYSCN R FTHT + + P +L +
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTT 212
>pdb|2RCM|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|2RCM|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a) At 1.73 A Resolution
pdb|3DSJ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSJ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 13(S)-Hod At 1.60 A
Resolution
pdb|3DSK|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
pdb|3DSK|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase Variant (F137l) (At-Aos(F137l), Cytochrome P450
74a, Cyp74a) Complexed With 12r,13s-Vernolic Acid At
1.55 A Resolution
Length = 495
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 239 GPVDYGPALSGDGVLPKGEFHPLA-AFHGRPKSQKALLADLASLV--WSAYQVLVVPSLR 295
G D+G S DG F+ LA AF+G + L AD L+ W + + + S+
Sbjct: 178 GKADFGG--SSDGT----AFNFLARAFYGTNPADTKLKADAPGLITKWVLFNLHPLLSIG 231
Query: 296 IPVYFENSLIVQFIHIYGLEGADSSGLDWKSIERTFMDEANDNGLLVGDQSLNFR----T 351
+P E LI H + L A D++ + F++ A + +LV L T
Sbjct: 232 LPRVIEEPLI----HTFSLPPALVKS-DYQRLYEFFLESAGE--ILVEADKLGISREEAT 284
Query: 352 YKVNFADCSVCSFAISKSINSYTS-RFLFDNYTMIVSEYLDSKKLHQIMSELAEEFRRV 409
+ + FA C N++ + LF N + + HQ+ + LAEE R V
Sbjct: 285 HNLLFATC----------FNTWGGMKILFPNMVKRIG-----RAGHQVHNRLAEEIRSV 328
>pdb|2RCH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCH|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hod At 1.85 A Resolution
pdb|2RCL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|2RCL|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 12r,13s-Vernolic Acid At 2.4 A Resolution
pdb|3CLI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3CLI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) At 1.80 A
Resolution
pdb|3DSI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
pdb|3DSI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Allene Oxide
Synthase (Aos, Cytochrome P450 74a, Cyp74a) Complexed
With 13(S)-Hot At 1.60 A Resolution
Length = 495
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 239 GPVDYGPALSGDGVLPKGEFHPLA-AFHGRPKSQKALLADLASLV--WSAYQVLVVPSLR 295
G D+G S DG F+ LA AF+G + L AD L+ W + + + S+
Sbjct: 178 GKADFGG--SSDGT----AFNFLARAFYGTNPADTKLKADAPGLITKWVLFNLHPLLSIG 231
Query: 296 IPVYFENSLIVQFIHIYGLEGADSSGLDWKSIERTFMDEANDNGLLVGDQSLNFR----T 351
+P E LI H + L A D++ + F++ A + +LV L T
Sbjct: 232 LPRVIEEPLI----HTFSLPPALVKS-DYQRLYEFFLESAGE--ILVEADKLGISREEAT 284
Query: 352 YKVNFADCSVCSFAISKSINSYTS-RFLFDNYTMIVSEYLDSKKLHQIMSELAEEFRRV 409
+ + FA C N++ + LF N + + HQ+ + LAEE R V
Sbjct: 285 HNLLFATC----------FNTWGGMKILFPNMVKRIG-----RAGHQVHNRLAEEIRSV 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,544,665
Number of Sequences: 62578
Number of extensions: 641361
Number of successful extensions: 1640
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 6
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)