BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005854
         (673 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4LV24|AFF4_DROVI AF4/FMR2 family member 4 OS=Drosophila virilis GN=lilli PE=3 SV=2
          Length = 1823

 Score = 37.4 bits (85), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 567  RLLKQNRYLDFVQRWNLFKYKLDKAVTALSHMDFEMALYYLRSSDHD--LYTMHSLVHHA 624
            +L KQN YL +V   +    + D+ V   +H+DF      +R  DH+    T+HS +H  
Sbjct: 1749 QLCKQNEYLTYVNSAHELWDQADRLVRTGNHIDF------IRKLDHENGPLTLHSTMHEV 1802

Query: 625  TQELEASLVCFKD 637
             + ++A L   +D
Sbjct: 1803 FRYVQAGLKTLRD 1815


>sp|B4MUE1|AFF4_DROWI AF4/FMR2 family member 4 OS=Drosophila willistoni GN=lilli PE=3 SV=1
          Length = 1837

 Score = 37.0 bits (84), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 567  RLLKQNRYLDFVQRWNLFKYKLDKAVTALSHMDFEMALYYLRSSDHD--LYTMHSLVHHA 624
            +L KQN YL +V   +    + D+ V   +H+DF       R  DH+    T+HS +H  
Sbjct: 1761 QLCKQNEYLTYVNSAHELWDQADRLVRTGNHLDF------FRELDHENGPLTLHSTMHEV 1814

Query: 625  TQELEASLVCFKD 637
             + ++A L   +D
Sbjct: 1815 FRYVQAGLKTLRD 1827


>sp|B4KFE1|AFF4_DROMO AF4/FMR2 family member 4 OS=Drosophila mojavensis GN=lilli PE=3 SV=1
          Length = 1782

 Score = 36.6 bits (83), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 568  LLKQNRYLDFVQRWNLFKYKLDKAVTALSHMDFEMALYYLRSSDHD--LYTMHSLVHHAT 625
            L KQN YL +V   +    + D+ V   +H+DF      +R  DH+    T+HS +H   
Sbjct: 1709 LCKQNEYLTYVNSAHELWDQADRLVRNGNHIDF------IRKLDHENGPLTLHSTMHEVF 1762

Query: 626  QELEASLVCFKD 637
            + ++A L   +D
Sbjct: 1763 RYVQAGLKTLRD 1774


>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6
          Length = 2803

 Score = 33.5 bits (75), Expect = 6.0,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 81/233 (34%), Gaps = 48/233 (20%)

Query: 52   KSSLSAATPPPIPSLINSL-----LSLSLPISIHIRLVGPTSSFP--------------- 91
            K + S + P PIP    +L       +S P+  H+    P+  FP               
Sbjct: 2120 KEAQSPSPPHPIPMGSPTLWPETEAHVSPPLDSHLGPARPSLDFPASAFGFSSLQPAPPQ 2179

Query: 92   -PSTSSSLLHSYLSAAQSSSRFHVISPSATTSSHSLAISHSPHFDISVSPSLASHLSQTL 150
             PS +        S A S  R   ++P   T +      H  + +++ +PSL S L Q  
Sbjct: 2180 LPSPAEPRSAPCGSLAFSGDRALALAPGPPTRTR-----HDEYLEVTKAPSLDSSLPQL- 2233

Query: 151  DSLLASTPSSLRSPLLSIPYSSIDEIVKQDFEKEKHVNGIYIYLLNLGSKAKNYAYSYSP 210
                  +PSS  +PLLS         + +    E     I        S A+ ++ S   
Sbjct: 2234 -----PSPSSPGAPLLSNLPRPASPALSEGSSSEATTPVI-------SSVAERFSPSLEA 2281

Query: 211  -----GESSPGFTKCLGSIWT----GKERYVWIDLGAGPVDYGPALSGDGVLP 254
                 GE  PG      S+W            +DL   P    P   GDG+LP
Sbjct: 2282 AEQESGELDPGMEPAAHSLWDLTPLSPAPPASLDLALAPAPSLPGDMGDGILP 2334


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,610,588
Number of Sequences: 539616
Number of extensions: 10029595
Number of successful extensions: 30975
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 29389
Number of HSP's gapped (non-prelim): 1038
length of query: 673
length of database: 191,569,459
effective HSP length: 124
effective length of query: 549
effective length of database: 124,657,075
effective search space: 68436734175
effective search space used: 68436734175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)