Query 005854
Match_columns 673
No_of_seqs 67 out of 69
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hnra_ a.155.1.1 (A:) H1 prot 39.4 7.7 0.00056 28.5 2.4 20 202-230 5-24 (47)
2 d1mwza_ d.58.17.1 (A:) Metal i 15.1 42 0.003 25.2 2.5 28 343-373 1-28 (73)
3 d1cc8a_ d.58.17.1 (A:) ATX1 me 15.0 1.4E+02 0.01 22.3 5.7 53 345-401 4-61 (72)
4 d1fe0a_ d.58.17.1 (A:) ATX1 me 10.8 2.1E+02 0.015 20.9 5.4 52 346-401 2-56 (66)
5 d1x91a_ a.29.6.1 (A:) Pectin m 8.6 4.5E+02 0.033 20.8 8.8 74 538-613 31-107 (149)
6 d1zl8a1 a.194.1.1 (A:4-53) Lin 8.2 1.3E+02 0.0096 22.0 3.1 21 544-564 1-21 (50)
7 d1uasa1 b.71.1.1 (A:274-362) M 8.2 67 0.0048 25.1 1.6 41 188-228 24-64 (89)
8 d1s96a_ c.37.1.1 (A:) Guanylat 7.9 4.7E+02 0.034 22.4 7.7 83 81-179 5-93 (205)
9 d1a8ya2 c.47.1.3 (A:127-228) C 7.1 68 0.005 26.0 1.2 25 80-108 19-43 (102)
10 d1qupa2 d.58.17.1 (A:2-73) Cop 6.6 4.1E+02 0.03 19.3 5.6 52 346-401 7-62 (72)
No 1
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=39.39 E-value=7.7 Score=28.55 Aligned_cols=20 Identities=40% Similarity=0.875 Sum_probs=13.7
Q ss_pred CcceeeCCCCCCCCCccccccceeecCcc
Q 005854 202 KNYAYSYSPGESSPGFTKCLGSIWTGKER 230 (673)
Q Consensus 202 ~~Y~Y~y~~~~~~~~~~~Cl~~~WiG~~R 230 (673)
-+|.|+..++.. ++|+|+||
T Consensus 5 ~KY~y~~~~g~~---------~tWTGrGR 24 (47)
T d1hnra_ 5 AKYSYVDENGET---------KTWTGQGR 24 (47)
T ss_dssp CCBEECCSSCCC---------EECCTTSS
T ss_pred CcccccCCCCCc---------ceeecCCc
Confidence 356665544444 89999998
No 2
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.06 E-value=42 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCceeEEEeeeeecCCChhHHHHHHhhhhcc
Q 005854 343 GDQSLNFRTYKVNFADCSVCSFAISKSINSY 373 (673)
Q Consensus 343 ~~Qkl~F~~~~isl~d~~~la~A~~rSl~S~ 373 (673)
.||+++|...-+ .|+.|+..+.+.++..
T Consensus 1 sg~k~~~~V~Gm---~C~~C~~~Ie~~l~~~ 28 (73)
T d1mwza_ 1 SGTRYSWKVSGM---DCAACARKVENAVRQL 28 (73)
T ss_dssp CCCCEEEECTTC---CSHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCc---CCHHHHHHHHHHHhcC
Confidence 478888876654 4999999999999876
No 3
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.98 E-value=1.4e+02 Score=22.28 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=36.1
Q ss_pred ceeEEEeeeeecCCChhHHHHHHhhhhcccccee----e-cceeEEEeeeecHHHHHHHHHH
Q 005854 345 QSLNFRTYKVNFADCSVCSFAISKSINSYTSRFL----F-DNYTMIVSEYLDSKKLHQIMSE 401 (673)
Q Consensus 345 Qkl~F~~~~isl~d~~~la~A~~rSl~S~ts~~l----~-~~~~~~~~~YLDSkeL~~~L~~ 401 (673)
|...|++. + .|..|+..+.+++........ + .+-+.++..-+|..+|...+++
T Consensus 4 kt~~f~V~-M---tC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~ 61 (72)
T d1cc8a_ 4 KHYQFNVV-M---TCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKK 61 (72)
T ss_dssp EEEEEEEC-C---CSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEEEC-c---CcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHH
Confidence 45677775 2 399999999999987521111 1 2446666666888888887765
No 4
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}
Probab=10.84 E-value=2.1e+02 Score=20.86 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=34.2
Q ss_pred eeEEEeeeeecCCChhHHHHHHhhhhccccceee---cceeEEEeeeecHHHHHHHHHH
Q 005854 346 SLNFRTYKVNFADCSVCSFAISKSINSYTSRFLF---DNYTMIVSEYLDSKKLHQIMSE 401 (673)
Q Consensus 346 kl~F~~~~isl~d~~~la~A~~rSl~S~ts~~l~---~~~~~~~~~YLDSkeL~~~L~~ 401 (673)
|..|... -.|..|+..+.++++....--.. .+-+.++..-+|...|...+++
T Consensus 2 k~ef~V~----M~C~~C~~~I~~aL~~~~gv~v~v~~~~~~v~V~~~~~~~~i~~~I~~ 56 (66)
T d1fe0a_ 2 KHEFSVD----MTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKK 56 (66)
T ss_dssp EEEEEEC----CCSHHHHHHHHHHHHHHCSEEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred CEEEEEc----cCchHHHHHHHHHHhcCCCcEEEEEcCCCEEEEEeeCCHHHHHHHHHH
Confidence 3456663 26999999999999876432111 2446666666788777776654
No 5
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.57 E-value=4.5e+02 Score=20.79 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccccchhcccchhHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhcccc
Q 005854 538 RNVLLTSLNYSISSAVDVLE---SIAAHGGERRLLKQNRYLDFVQRWNLFKYKLDKAVTALSHMDFEMALYYLRSSDHD 613 (673)
Q Consensus 538 RN~i~t~Ld~SI~sai~~L~---s~~~~~~~~~ll~~~~~~e~~~r~n~v~~kl~r~~sa~s~ldf~~Al~~l~~a~~d 613 (673)
+..+...++.++..+...+. .+.....+.. .+ ..-..=.+-|...+..|++++.++...+|++|-..+..+-.+
T Consensus 31 ~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~-~~-~al~~C~~~y~~a~~~L~~a~~~l~~~~~~~~~~~lsaa~~~ 107 (149)
T d1x91a_ 31 QALAKTTLDSTQARATQTLKKLQSIIDGGVDPR-SK-LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDG 107 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555666666654444443 3333222211 11 123456788999999999999999999998876665555443
No 6
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=8.23 E-value=1.3e+02 Score=21.96 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 005854 544 SLNYSISSAVDVLESIAAHGG 564 (673)
Q Consensus 544 ~Ld~SI~sai~~L~s~~~~~~ 564 (673)
.|++.|+++|+.|+.+..+|.
T Consensus 1 ~L~rDv~RaieLle~Lq~sge 21 (50)
T d1zl8a1 1 NLERDVQRILELMEHVQKTGE 21 (50)
T ss_dssp HHHHHHHHHHHHHHHHGGGSS
T ss_pred ChhhHHHHHHHHHHHHHHcCC
Confidence 378999999999999998875
No 7
>d1uasa1 b.71.1.1 (A:274-362) Melibiase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=8.16 E-value=67 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=26.0
Q ss_pred CceEEEEeeCCCCCCcceeeCCCCCCCCCccccccceeecC
Q 005854 188 NGIYIYLLNLGSKAKNYAYSYSPGESSPGFTKCLGSIWTGK 228 (673)
Q Consensus 188 ~~~~Iy~iN~~~q~~~Y~Y~y~~~~~~~~~~~Cl~~~WiG~ 228 (673)
.+++|-++|.+.....+..+-..-+..+...-...|+|.|+
T Consensus 24 g~~aVa~~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlw~~~ 64 (89)
T d1uasa1 24 NRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHS 64 (89)
T ss_dssp TCEEEEEEECSSSCEEEEEEGGGTTCCTTCEEEEEETTTTE
T ss_pred CCEEEEEEeCCCCcEEEEEEHHHcCCCCCCcEEEEECcCCC
Confidence 57999999998666666655444333333333567888765
No 8
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=7.92 E-value=4.7e+02 Score=22.42 Aligned_cols=83 Identities=10% Similarity=0.104 Sum_probs=44.8
Q ss_pred EEEecCCCCCCCCCCchhHHHHHHhhhcCCce-----eeecCCCCCCCCcccccccceEeeecCchhHHHHHHHHhhh-c
Q 005854 81 IRLVGPTSSFPPSTSSSLLHSYLSAAQSSSRF-----HVISPSATTSSHSLAISHSPHFDISVSPSLASHLSQTLDSL-L 154 (673)
Q Consensus 81 V~LvG~~~sf~~d~~~~~L~~~L~a~~~~~~~-----~~~~p~~~~~~h~l~i~~~~~~~V~~a~~l~~~~~~av~~~-~ 154 (673)
|.|+|+ .+.| ...|...|-.-++..++ |-.|| +.+-.+.-.=++-|+ .+..++.++.+ +
T Consensus 5 ivi~GP----SG~G-K~tl~~~L~~~~p~~~~~~~is~TTR~-----~R~~E~~G~dY~Fvs-----~~~F~~~i~~g~f 69 (205)
T d1s96a_ 5 YIVSAP----SGAG-KSSLIQALLKTQPLYDTQVSVSHTTRQ-----PRPGEVHGEHYFFVN-----HDEFKEMISRDAF 69 (205)
T ss_dssp EEEECC----TTSC-HHHHHHHHHHHSCTTTEEECCCEECSC-----CCTTCCBTTTBEECC-----HHHHHHHHHTTCE
T ss_pred EEEECC----CCCC-HHHHHHHHHhhCCccCceEEEEEeccC-----CCccccccccceeec-----HHHHHHHhhhhhh
Confidence 578996 5555 77776555554443222 23333 112222222222233 34566666654 2
Q ss_pred cCCCCCCCCCcccccchhhHHHHHH
Q 005854 155 ASTPSSLRSPLLSIPYSSIDEIVKQ 179 (673)
Q Consensus 155 ~~~~s~~~~~~~~vp~~vvD~~i~~ 179 (673)
-+. ..+++..|..|.+.++..+.+
T Consensus 70 lE~-~~~~g~~YGt~~~~v~~~~~~ 93 (205)
T d1s96a_ 70 LEH-AEVFGNYYGTSREAIEQVLAT 93 (205)
T ss_dssp EEE-EEETTEEEEEEHHHHHHHHTT
T ss_pred eeE-EEECCceeccccchHHHHHhc
Confidence 222 357888888999988877654
No 9
>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.13 E-value=68 Score=26.00 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.8
Q ss_pred EEEEecCCCCCCCCCCchhHHHHHHhhhc
Q 005854 80 HIRLVGPTSSFPPSTSSSLLHSYLSAAQS 108 (673)
Q Consensus 80 ~V~LvG~~~sf~~d~~~~~L~~~L~a~~~ 108 (673)
+|.+||| |++.. ...++.|+.++..
T Consensus 19 ~v~VvGf---F~~~~-~~~~~~F~~~A~~ 43 (102)
T d1a8ya2 19 EIKLIGY---FKNKD-SEHYKAFKEAAEE 43 (102)
T ss_dssp SCEEEEE---CSSTT-CHHHHHHHHHHHH
T ss_pred CEEEEEE---ECCCC-cHHHHHHHHHHHH
Confidence 3789999 88655 6789999998763
No 10
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.63 E-value=4.1e+02 Score=19.29 Aligned_cols=52 Identities=10% Similarity=0.232 Sum_probs=34.6
Q ss_pred eeEEEeeeeecCCChhHHHHHHhhhhccccce---e-ecceeEEEeeeecHHHHHHHHHH
Q 005854 346 SLNFRTYKVNFADCSVCSFAISKSINSYTSRF---L-FDNYTMIVSEYLDSKKLHQIMSE 401 (673)
Q Consensus 346 kl~F~~~~isl~d~~~la~A~~rSl~S~ts~~---l-~~~~~~~~~~YLDSkeL~~~L~~ 401 (673)
+.+|.+. + .|..|+..+.+++.....=. . +.+-+..+..-+|..+|...+++
T Consensus 7 ~~~f~V~-M---~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~ 62 (72)
T d1qupa2 7 EATYAIP-M---HCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRN 62 (72)
T ss_dssp EEEEECC-C---CSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHH
T ss_pred EEEEEEc-c---CCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHH
Confidence 5677764 2 59999999999998763211 1 12445566555888888877755
Done!