BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005855
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 242/485 (49%), Gaps = 29/485 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 223
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 224 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 282
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 283 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 342
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 343 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 401
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEA 566
NP++ EVA A+ RAL MS ER RH + + W E F+S+L V E+
Sbjct: 402 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAES 461
Query: 567 QLRIK 571
Q R K
Sbjct: 462 QQRDK 466
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 242/485 (49%), Gaps = 29/485 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 223
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 224 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 282
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 283 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 342
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 343 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 401
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEA 566
NP++ EVA A+ RAL MS ER RH + + W E F+S+L V E+
Sbjct: 402 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAES 461
Query: 567 QLRIK 571
Q R K
Sbjct: 462 QQRDK 466
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 235/474 (49%), Gaps = 26/474 (5%)
Query: 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLG-VKEFEARWIGWAGVNVPDEIGQK 153
RL+VV+NR+ SAGGL +LG +K W GW+G ++ K
Sbjct: 2 RLVVVSNRIAPPDEHAA--------SAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 53
Query: 154 ALTKALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAA 213
+ K L E + +YYN + N +LWP FHY RL + + +
Sbjct: 54 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 104
Query: 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR 273
Y++ N + AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI
Sbjct: 105 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 164
Query: 274 TLPXXXXXXXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAA 330
LP GF T + F+ S TR+ G+ R
Sbjct: 165 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEV 222
Query: 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390
+PIGI+ + + P+ + +L+ + + V+RLD KG+P++ LA+E LE
Sbjct: 223 YPIGIEPKEIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 281
Query: 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDF 450
+ GK+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D
Sbjct: 282 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 341
Query: 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILV 509
L ++ +DV LVT LRDG NLV+ E+VA QD GVL+LS+FAGAA L A++V
Sbjct: 342 KLLXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIV 400
Query: 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563
NP++ EVA A+ RAL S ER RH + + W E F+S+L V
Sbjct: 401 NPYDRDEVAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQIV 454
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 167/419 (39%), Gaps = 34/419 (8%)
Query: 114 SWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 168
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 28 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTMELHSGREILVR 83
Query: 169 L---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVV 225
L D + N N++W +Y G + + + + +A + + + FAD +
Sbjct: 84 LIRHDPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 142
Query: 226 NKHY-KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXX 283
K + D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 143 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 202
Query: 284 XXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSE 338
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 203 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP- 261
Query: 339 RFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397
L ++ + E E +A G ++++ R D IK + + AF L
Sbjct: 262 -----LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLE 314
Query: 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457
K +L P R VP +V V N G+ T +D D A +
Sbjct: 315 KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACF 370
Query: 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
D+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 371 RRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 167/419 (39%), Gaps = 34/419 (8%)
Query: 114 SWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 168
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 27 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTMELHSGREILVR 82
Query: 169 L---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVV 225
L D + N N++W +Y G + + + + +A + + + FAD +
Sbjct: 83 LIRHDPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 141
Query: 226 NKHY-KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXX 283
K + D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 142 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 201
Query: 284 XXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSE 338
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 202 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP- 260
Query: 339 RFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397
L ++ + E E +A G ++++ R D IK + + AF L
Sbjct: 261 -----LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLE 313
Query: 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457
K +L P R VP +V V N G+ T +D D A +
Sbjct: 314 KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACF 369
Query: 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
D+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 370 RRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 427
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 166/419 (39%), Gaps = 34/419 (8%)
Query: 114 SWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 168
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 28 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTXELHSGREILVR 83
Query: 169 L---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVV 225
L D + N N+ W +Y G + + + + +A + + + FAD +
Sbjct: 84 LIRHDPAVFRNVQNFXTANLXWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 142
Query: 226 NKHY-KDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXX 283
K + D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 143 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 202
Query: 284 XXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSE 338
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 203 LHGXLPATTIGFFADRWCRNFLESVADLLPDARIDREAXTVEWRGHRTRLRTXPLGYSP- 261
Query: 339 RFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397
L ++ + E E +A G ++++ R D IK + + AF L
Sbjct: 262 -----LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLE 314
Query: 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457
K L P R VP +V V N G+ T +D D A +
Sbjct: 315 KTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACF 370
Query: 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 516
D+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 371 RRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 25 KIERDLRKSSRASHPNDVTDNGGREVFEDEQRLR----DGDNLGPSIVDEDLEGPASTPN 80
K ERD R + P VT + +EVFED +R DG + G + ++ E A
Sbjct: 88 KKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 147
Query: 81 E---GCERLDGRTFS 92
E G E +DGR+ S
Sbjct: 148 EEKQGTE-IDGRSIS 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,912,994
Number of Sequences: 62578
Number of extensions: 838668
Number of successful extensions: 1881
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 13
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)