Query 005855
Match_columns 673
No_of_seqs 398 out of 2740
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 14:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03064 alpha,alpha-trehalose 100.0 3E-147 7E-152 1286.0 70.4 663 1-667 1-666 (934)
2 PLN02205 alpha,alpha-trehalose 100.0 1E-130 3E-135 1152.1 64.2 559 93-667 59-661 (854)
3 PLN03063 alpha,alpha-trehalose 100.0 1E-127 3E-132 1127.4 65.5 567 93-667 10-576 (797)
4 PRK14501 putative bifunctional 100.0 2E-118 4E-123 1049.2 61.5 550 94-662 1-554 (726)
5 PRK10117 trehalose-6-phosphate 100.0 1E-117 2E-122 975.7 48.7 451 94-565 2-457 (474)
6 TIGR02398 gluc_glyc_Psyn gluco 100.0 3E-116 8E-121 973.4 49.9 454 99-561 1-482 (487)
7 PF00982 Glyco_transf_20: Glyc 100.0 3E-116 7E-121 975.2 38.4 462 95-561 2-474 (474)
8 COG0380 OtsA Trehalose-6-phosp 100.0 5E-111 1E-115 918.6 48.8 462 90-561 11-479 (486)
9 TIGR02400 trehalose_OtsA alpha 100.0 2E-107 4E-112 906.8 52.3 452 95-560 1-455 (456)
10 cd03788 GT1_TPS Trehalose-6-Ph 100.0 4.5E-98 1E-102 835.4 50.8 456 95-559 1-459 (460)
11 KOG1050 Trehalose-6-phosphate 100.0 2.2E-94 4.7E-99 823.6 45.6 554 93-667 2-562 (732)
12 TIGR02468 sucrsPsyn_pln sucros 100.0 1.2E-27 2.5E-32 282.1 40.0 311 232-563 311-672 (1050)
13 cd03792 GT1_Trehalose_phosphor 100.0 5.8E-27 1.3E-31 254.6 27.1 300 210-561 65-371 (372)
14 PRK00654 glgA glycogen synthas 100.0 3.8E-26 8.3E-31 256.5 32.8 310 217-562 104-463 (466)
15 PLN02939 transferase, transfer 100.0 1.2E-25 2.6E-30 261.7 35.5 321 211-563 590-968 (977)
16 TIGR02472 sucr_P_syn_N sucrose 99.9 7.4E-26 1.6E-30 252.2 30.9 311 217-559 100-438 (439)
17 PRK15484 lipopolysaccharide 1, 99.9 2E-25 4.4E-30 244.2 33.7 273 230-562 98-378 (380)
18 PLN02316 synthase/transferase 99.9 1.9E-25 4E-30 264.3 35.5 310 210-562 688-1034(1036)
19 TIGR02095 glgA glycogen/starch 99.9 8.9E-26 1.9E-30 253.8 31.2 312 214-561 111-472 (473)
20 PRK14098 glycogen synthase; Pr 99.9 1.1E-25 2.3E-30 254.0 31.8 323 207-562 117-486 (489)
21 PRK15427 colanic acid biosynth 99.9 2.8E-25 6.1E-30 245.3 32.2 285 223-561 108-405 (406)
22 TIGR03449 mycothiol_MshA UDP-N 99.9 2E-24 4.3E-29 236.9 33.8 289 231-562 101-402 (405)
23 PRK14099 glycogen synthase; Pr 99.9 1.9E-24 4E-29 243.7 34.0 294 231-563 133-480 (485)
24 cd03818 GT1_ExpC_like This fam 99.9 6.1E-25 1.3E-29 241.1 26.5 284 231-556 87-395 (396)
25 cd03791 GT1_Glycogen_synthase_ 99.9 3.8E-24 8.2E-29 240.2 32.1 313 211-559 109-474 (476)
26 TIGR02470 sucr_synth sucrose s 99.9 1.4E-23 3.1E-28 243.4 35.1 327 216-559 369-745 (784)
27 cd03796 GT1_PIG-A_like This fa 99.9 2.9E-23 6.3E-28 228.1 31.6 279 231-564 88-370 (398)
28 PLN02871 UDP-sulfoquinovose:DA 99.9 1.8E-23 3.9E-28 234.8 30.4 273 231-558 144-430 (465)
29 PLN00142 sucrose synthase 99.9 4.1E-23 9E-28 239.6 33.3 331 211-559 387-768 (815)
30 TIGR03088 stp2 sugar transfera 99.9 4.5E-23 9.8E-28 223.6 30.1 232 287-561 136-372 (374)
31 cd03800 GT1_Sucrose_synthase T 99.9 8E-23 1.7E-27 221.6 31.9 295 223-556 93-397 (398)
32 TIGR02149 glgA_Coryne glycogen 99.9 5.9E-23 1.3E-27 223.1 31.0 286 231-561 83-386 (388)
33 cd03813 GT1_like_3 This family 99.9 4.2E-23 9.1E-28 232.5 28.7 283 224-557 166-472 (475)
34 cd03806 GT1_ALG11_like This fa 99.9 2.4E-22 5.1E-27 222.9 31.5 274 232-551 108-416 (419)
35 PLN02949 transferase, transfer 99.9 6.1E-22 1.3E-26 221.7 33.2 284 233-563 140-458 (463)
36 cd05844 GT1_like_7 Glycosyltra 99.9 3.3E-22 7.2E-27 214.9 30.0 275 225-556 77-365 (367)
37 cd04951 GT1_WbdM_like This fam 99.9 3.7E-22 8.1E-27 212.8 29.9 282 226-560 75-359 (360)
38 PRK15490 Vi polysaccharide bio 99.9 5.9E-22 1.3E-26 221.3 31.3 290 231-561 280-575 (578)
39 cd03805 GT1_ALG2_like This fam 99.9 6.7E-22 1.5E-26 215.2 30.5 283 230-554 93-391 (392)
40 cd04962 GT1_like_5 This family 99.9 2.2E-21 4.7E-26 208.9 32.2 277 231-561 84-370 (371)
41 TIGR02918 accessory Sec system 99.9 2E-21 4.3E-26 219.6 32.1 275 229-561 209-499 (500)
42 PRK15179 Vi polysaccharide bio 99.9 1E-21 2.2E-26 227.9 29.2 279 231-558 400-690 (694)
43 PRK10307 putative glycosyl tra 99.9 2E-21 4.3E-26 214.3 29.9 285 230-563 105-409 (412)
44 cd03819 GT1_WavL_like This fam 99.9 1.7E-21 3.7E-26 207.9 28.4 266 231-546 78-349 (355)
45 cd03812 GT1_CapH_like This fam 99.9 1E-21 2.2E-26 209.9 25.7 252 231-532 80-336 (358)
46 cd03809 GT1_mtfB_like This fam 99.9 1.4E-21 3.1E-26 207.5 24.5 276 230-556 84-364 (365)
47 cd04946 GT1_AmsK_like This fam 99.9 1.2E-20 2.6E-25 208.5 31.5 272 231-556 127-406 (407)
48 cd03821 GT1_Bme6_like This fam 99.9 5.9E-21 1.3E-25 201.8 27.7 278 229-556 85-374 (375)
49 cd03822 GT1_ecORF704_like This 99.9 7.9E-21 1.7E-25 201.9 27.9 280 231-559 76-365 (366)
50 cd04949 GT1_gtfA_like This fam 99.9 4.5E-21 9.8E-26 207.6 26.3 268 229-554 97-371 (372)
51 cd03799 GT1_amsK_like This is 99.9 1.2E-20 2.7E-25 200.7 29.2 266 231-553 79-353 (355)
52 cd03793 GT1_Glycogen_synthase_ 99.9 2.3E-20 5.1E-25 208.6 31.1 306 230-560 147-585 (590)
53 PRK10125 putative glycosyl tra 99.9 1.1E-20 2.4E-25 208.6 27.1 188 326-560 212-403 (405)
54 cd03807 GT1_WbnK_like This fam 99.9 2.6E-20 5.6E-25 196.2 28.6 278 231-558 80-363 (365)
55 PRK09922 UDP-D-galactose:(gluc 99.9 1.6E-20 3.6E-25 203.5 27.2 269 225-561 79-355 (359)
56 cd03817 GT1_UGDG_like This fam 99.9 3.5E-20 7.6E-25 196.2 28.9 273 231-559 84-371 (374)
57 cd03801 GT1_YqgM_like This fam 99.9 5.3E-20 1.2E-24 192.6 29.8 282 231-559 85-373 (374)
58 cd03794 GT1_wbuB_like This fam 99.9 6.5E-20 1.4E-24 194.5 29.7 279 229-555 97-393 (394)
59 cd03798 GT1_wlbH_like This fam 99.9 5.4E-20 1.2E-24 193.5 28.8 282 230-561 92-376 (377)
60 cd03820 GT1_amsD_like This fam 99.9 3.5E-20 7.5E-25 193.5 26.5 262 231-556 83-347 (348)
61 cd03814 GT1_like_2 This family 99.9 3.4E-20 7.4E-25 196.5 26.6 274 231-559 83-363 (364)
62 TIGR03087 stp1 sugar transfera 99.9 1.5E-19 3.2E-24 198.6 29.0 219 285-560 170-395 (397)
63 PHA01633 putative glycosyl tra 99.9 1.7E-20 3.7E-25 200.9 20.8 195 331-556 118-334 (335)
64 cd03823 GT1_ExpE7_like This fa 99.9 4.4E-19 9.6E-24 187.3 29.6 259 231-559 96-357 (359)
65 cd03816 GT1_ALG1_like This fam 99.9 1.8E-19 3.9E-24 199.6 27.7 280 230-557 94-409 (415)
66 PHA01630 putative group 1 glyc 99.9 1.8E-19 3.9E-24 193.9 26.3 214 287-561 94-330 (331)
67 cd03795 GT1_like_4 This family 99.8 2.6E-19 5.6E-24 190.7 26.9 264 230-546 82-350 (357)
68 cd03808 GT1_cap1E_like This fa 99.8 4.2E-19 9.2E-24 186.1 27.7 273 231-556 80-358 (359)
69 PLN02846 digalactosyldiacylgly 99.8 2.8E-19 6.1E-24 198.6 27.4 187 331-561 201-391 (462)
70 cd03802 GT1_AviGT4_like This f 99.8 6.7E-19 1.4E-23 186.4 27.3 243 231-558 87-333 (335)
71 PLN02501 digalactosyldiacylgly 99.8 1.8E-18 4E-23 195.4 31.3 264 231-559 434-707 (794)
72 cd03804 GT1_wbaZ_like This fam 99.8 1.3E-18 2.7E-23 187.2 25.5 248 230-554 82-349 (351)
73 cd04955 GT1_like_6 This family 99.8 1.9E-18 4.1E-23 184.7 26.6 269 232-559 85-362 (363)
74 cd03811 GT1_WabH_like This fam 99.8 3.2E-18 7E-23 178.7 24.6 246 231-527 81-332 (353)
75 cd03825 GT1_wcfI_like This fam 99.8 9.1E-18 2E-22 179.4 26.5 196 326-561 159-364 (365)
76 PLN02275 transferase, transfer 99.8 1.6E-17 3.4E-22 181.4 26.3 240 230-525 99-371 (371)
77 COG0297 GlgA Glycogen synthase 99.8 2.3E-16 4.9E-21 175.8 28.9 319 211-562 108-478 (487)
78 PRK05749 3-deoxy-D-manno-octul 99.8 1.6E-16 3.6E-21 176.2 26.5 287 223-560 117-418 (425)
79 PF00534 Glycos_transf_1: Glyc 99.7 2.8E-17 6.2E-22 158.6 14.5 156 361-541 13-171 (172)
80 cd04950 GT1_like_1 Glycosyltra 99.6 5.8E-14 1.3E-18 153.4 26.4 264 231-561 102-371 (373)
81 KOG1111 N-acetylglucosaminyltr 99.6 1.6E-14 3.4E-19 150.8 17.0 172 320-527 163-335 (426)
82 PLN02605 monogalactosyldiacylg 99.6 9.7E-13 2.1E-17 144.3 27.8 217 287-558 150-378 (382)
83 KOG0853 Glycosyltransferase [C 99.5 1.6E-12 3.4E-17 143.5 22.0 187 362-560 272-466 (495)
84 COG0438 RfaG Glycosyltransfera 99.5 4.7E-12 1E-16 130.4 21.9 198 327-561 173-376 (381)
85 COG1877 OtsB Trehalose-6-phosp 99.4 1.3E-13 2.9E-18 142.5 7.1 82 577-668 4-85 (266)
86 KOG1387 Glycosyltransferase [C 99.4 1.3E-11 2.8E-16 128.3 20.6 312 211-563 126-460 (465)
87 PRK13609 diacylglycerol glucos 99.4 6.4E-11 1.4E-15 129.5 27.3 271 222-565 96-375 (380)
88 cd03785 GT1_MurG MurG is an N- 99.4 3.5E-11 7.5E-16 129.3 24.1 247 225-550 84-346 (350)
89 PRK00726 murG undecaprenyldiph 99.4 1.8E-11 4E-16 132.4 22.1 252 231-560 91-356 (357)
90 cd01635 Glycosyltransferase_GT 99.4 1E-11 2.2E-16 122.7 17.6 118 368-509 109-229 (229)
91 TIGR01133 murG undecaprenyldip 99.3 8.9E-11 1.9E-15 126.0 21.1 181 329-553 153-346 (348)
92 TIGR02094 more_P_ylases alpha- 99.3 2.4E-09 5.2E-14 123.5 32.0 182 362-558 388-597 (601)
93 TIGR00236 wecB UDP-N-acetylglu 99.3 5E-10 1.1E-14 121.9 24.8 252 227-535 83-341 (365)
94 PRK13608 diacylglycerol glucos 99.3 8.7E-10 1.9E-14 121.5 26.5 268 224-565 98-375 (391)
95 cd03786 GT1_UDP-GlcNAc_2-Epime 99.3 4.9E-10 1.1E-14 121.1 22.9 244 231-529 88-339 (363)
96 PLN02580 trehalose-phosphatase 99.3 7.7E-12 1.7E-16 135.7 8.0 73 583-667 111-183 (384)
97 PF02358 Trehalose_PPase: Treh 99.2 1.8E-11 3.9E-16 125.5 4.5 63 595-667 1-63 (235)
98 TIGR03713 acc_sec_asp1 accesso 99.2 5.6E-09 1.2E-13 118.8 24.5 260 229-549 222-509 (519)
99 TIGR00685 T6PP trehalose-phosp 99.1 4.9E-11 1.1E-15 123.1 6.5 71 589-669 1-71 (244)
100 PF13692 Glyco_trans_1_4: Glyc 99.1 2E-10 4.3E-15 106.4 9.9 129 363-526 2-134 (135)
101 PRK09814 beta-1,6-galactofuran 99.1 1.1E-08 2.3E-13 110.5 24.4 240 225-545 58-315 (333)
102 PLN02151 trehalose-phosphatase 99.1 1.7E-10 3.6E-15 124.0 8.1 73 583-667 90-162 (354)
103 PRK00025 lpxB lipid-A-disaccha 99.1 9.5E-09 2.1E-13 112.1 21.9 144 362-539 185-352 (380)
104 cd04299 GT1_Glycogen_Phosphory 99.1 1.1E-07 2.4E-12 112.0 31.1 182 364-561 479-689 (778)
105 PF05693 Glycogen_syn: Glycoge 99.0 5.6E-07 1.2E-11 101.5 29.5 307 234-562 146-582 (633)
106 PLN03017 trehalose-phosphatase 98.8 7.1E-09 1.5E-13 111.8 8.3 80 576-667 96-175 (366)
107 PRK10187 trehalose-6-phosphate 98.7 3.5E-08 7.5E-13 103.3 7.9 62 591-661 14-75 (266)
108 TIGR00215 lpxB lipid-A-disacch 98.6 7E-06 1.5E-10 90.5 23.3 135 362-528 190-348 (385)
109 PF13524 Glyco_trans_1_2: Glyc 98.6 2.6E-07 5.6E-12 80.4 9.4 88 462-556 1-91 (92)
110 TIGR02919 accessory Sec system 98.3 1.2E-05 2.6E-10 89.9 14.9 121 379-529 291-413 (438)
111 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.0019 4.1E-08 70.7 26.9 233 278-560 167-416 (419)
112 TIGR01484 HAD-SF-IIB HAD-super 98.0 1.1E-05 2.4E-10 80.5 6.3 55 593-661 1-55 (204)
113 KOG2941 Beta-1,4-mannosyltrans 97.1 0.029 6.4E-07 59.8 17.6 169 362-557 254-434 (444)
114 PRK01158 phosphoglycolate phos 97.0 0.00095 2.1E-08 67.7 6.0 54 592-660 4-57 (230)
115 cd01427 HAD_like Haloacid deha 97.0 0.001 2.2E-08 60.2 4.8 62 593-661 1-62 (139)
116 TIGR01487 SPP-like sucrose-pho 96.9 0.0012 2.7E-08 66.4 5.7 55 592-661 2-56 (215)
117 PLN02423 phosphomannomutase 96.9 0.0018 3.8E-08 67.1 6.5 54 591-660 7-60 (245)
118 PRK10513 sugar phosphate phosp 96.9 0.0017 3.6E-08 67.8 6.2 56 591-661 3-58 (270)
119 PF08282 Hydrolase_3: haloacid 96.8 0.0021 4.6E-08 65.0 6.2 62 594-670 1-66 (254)
120 PRK10530 pyridoxal phosphate ( 96.8 0.0021 4.5E-08 66.9 6.0 55 591-660 3-57 (272)
121 PTZ00174 phosphomannomutase; P 96.8 0.0026 5.5E-08 65.9 6.5 55 590-659 4-58 (247)
122 TIGR00099 Cof-subfamily Cof su 96.7 0.0021 4.7E-08 66.5 5.7 53 593-660 1-53 (256)
123 PRK10976 putative hydrolase; P 96.7 0.0028 6.2E-08 65.9 6.3 55 592-661 3-57 (266)
124 PRK15126 thiamin pyrimidine py 96.6 0.0032 6.8E-08 65.9 6.2 54 592-660 3-56 (272)
125 PF08323 Glyco_transf_5: Starc 96.5 0.013 2.8E-07 60.7 9.4 96 208-303 110-231 (245)
126 TIGR01689 EcbF-BcbF capsule bi 96.5 0.0068 1.5E-07 56.4 6.5 52 592-652 2-53 (126)
127 COG0561 Cof Predicted hydrolas 96.4 0.0056 1.2E-07 63.6 6.1 56 591-661 3-58 (264)
128 PRK03669 mannosyl-3-phosphogly 96.2 0.0074 1.6E-07 63.2 6.1 66 590-670 6-76 (271)
129 PRK00192 mannosyl-3-phosphogly 96.1 0.011 2.3E-07 62.1 6.4 65 591-670 4-72 (273)
130 PF13844 Glyco_transf_41: Glyc 96.1 0.3 6.6E-06 55.1 18.0 171 362-561 284-466 (468)
131 TIGR02461 osmo_MPG_phos mannos 96.0 0.01 2.2E-07 60.7 5.8 62 593-670 1-66 (225)
132 PF02684 LpxB: Lipid-A-disacch 96.0 1.2 2.5E-05 49.2 22.0 233 230-529 81-342 (373)
133 TIGR01482 SPP-subfamily Sucros 96.0 0.0095 2.1E-07 60.1 5.3 52 594-660 1-52 (225)
134 PF13439 Glyco_transf_4: Glyco 96.0 0.021 4.6E-07 53.8 7.5 92 231-341 80-177 (177)
135 PLN02887 hydrolase family prot 96.0 0.013 2.7E-07 68.0 6.7 58 588-660 305-362 (580)
136 TIGR02463 MPGP_rel mannosyl-3- 95.9 0.012 2.5E-07 59.5 5.5 54 593-661 1-54 (221)
137 COG0763 LpxB Lipid A disacchar 95.8 0.36 7.8E-06 52.7 16.7 251 230-546 84-365 (381)
138 PRK14502 bifunctional mannosyl 95.8 0.019 4.1E-07 67.0 7.0 64 582-660 404-470 (694)
139 TIGR01662 HAD-SF-IIIA HAD-supe 95.7 0.019 4.2E-07 53.0 5.6 63 592-661 1-71 (132)
140 TIGR01486 HAD-SF-IIB-MPGP mann 95.6 0.018 3.9E-07 59.8 5.7 54 593-661 1-54 (256)
141 PRK12702 mannosyl-3-phosphogly 95.6 0.022 4.8E-07 60.2 6.3 55 592-661 2-56 (302)
142 smart00775 LNS2 LNS2 domain. T 95.6 0.02 4.4E-07 55.2 5.6 63 593-659 1-66 (157)
143 TIGR01485 SPP_plant-cyano sucr 95.5 0.02 4.4E-07 59.1 5.6 55 591-657 1-55 (249)
144 TIGR02471 sucr_syn_bact_C sucr 95.3 0.014 3.1E-07 59.6 3.7 52 593-661 1-52 (236)
145 PF07429 Glyco_transf_56: 4-al 94.9 3.2 7E-05 44.9 19.8 141 364-526 186-332 (360)
146 TIGR01684 viral_ppase viral ph 94.8 0.059 1.3E-06 57.0 6.4 58 591-661 126-184 (301)
147 TIGR03492 conserved hypothetic 94.6 1.2 2.5E-05 49.6 16.6 141 365-528 209-365 (396)
148 PF02350 Epimerase_2: UDP-N-ac 94.4 9 0.00019 41.8 22.5 243 231-527 67-318 (346)
149 TIGR03568 NeuC_NnaA UDP-N-acet 94.3 6.2 0.00013 43.3 21.1 73 441-526 264-338 (365)
150 PF13579 Glyco_trans_4_4: Glyc 94.2 0.097 2.1E-06 48.4 6.0 84 230-334 72-160 (160)
151 TIGR01681 HAD-SF-IIIC HAD-supe 94.2 0.11 2.4E-06 48.2 6.1 64 592-658 1-65 (128)
152 COG0707 MurG UDP-N-acetylgluco 94.0 7.2 0.00016 42.8 20.7 94 451-553 244-349 (357)
153 PF05116 S6PP: Sucrose-6F-phos 93.6 0.059 1.3E-06 55.9 3.5 53 591-659 2-55 (247)
154 KOG3189 Phosphomannomutase [Li 93.0 0.18 3.9E-06 50.0 5.5 59 585-659 5-63 (252)
155 TIGR00213 GmhB_yaeD D,D-heptos 92.9 0.12 2.5E-06 50.6 4.2 52 592-650 2-53 (176)
156 PHA03398 viral phosphatase sup 92.6 0.25 5.4E-06 52.4 6.3 59 591-661 128-186 (303)
157 TIGR01261 hisB_Nterm histidino 92.5 0.19 4.2E-06 48.7 5.0 53 592-648 2-54 (161)
158 TIGR01457 HAD-SF-IIA-hyp2 HAD- 91.8 0.24 5.1E-06 51.4 5.1 53 592-660 2-57 (249)
159 TIGR01670 YrbI-phosphatas 3-de 91.3 0.26 5.7E-06 47.2 4.5 62 592-661 2-66 (154)
160 cd03784 GT1_Gtf_like This fami 91.1 27 0.00058 38.3 21.0 72 444-526 292-371 (401)
161 TIGR01426 MGT glycosyltransfer 91.1 8 0.00017 42.4 16.6 100 444-556 279-387 (392)
162 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.9 0.22 4.8E-06 51.9 3.8 49 592-652 2-50 (257)
163 TIGR01672 AphA HAD superfamily 90.9 0.65 1.4E-05 48.0 7.1 70 578-648 50-139 (237)
164 TIGR03590 PseG pseudaminic aci 90.6 2.1 4.5E-05 45.2 10.9 97 363-494 171-267 (279)
165 PRK02797 4-alpha-L-fucosyltran 90.4 5.2 0.00011 42.8 13.3 124 364-509 146-272 (322)
166 PRK09484 3-deoxy-D-manno-octul 90.4 0.26 5.7E-06 48.6 3.6 64 590-661 20-86 (183)
167 PRK10444 UMP phosphatase; Prov 90.3 0.27 5.8E-06 51.1 3.7 45 592-652 2-46 (248)
168 TIGR01668 YqeG_hyp_ppase HAD s 90.3 0.68 1.5E-05 45.1 6.4 55 590-658 24-79 (170)
169 COG1778 Low specificity phosph 90.2 0.52 1.1E-05 45.3 5.1 67 591-662 8-74 (170)
170 PF09419 PGP_phosphatase: Mito 90.1 0.71 1.5E-05 45.1 6.3 59 587-658 37-106 (168)
171 TIGR01656 Histidinol-ppas hist 89.9 0.56 1.2E-05 44.4 5.3 52 593-649 2-53 (147)
172 TIGR01664 DNA-3'-Pase DNA 3'-p 89.8 0.49 1.1E-05 46.1 4.9 56 591-650 13-69 (166)
173 PRK06769 hypothetical protein; 88.8 0.49 1.1E-05 46.2 4.2 51 591-649 4-54 (173)
174 COG4641 Uncharacterized protei 88.8 2.2 4.7E-05 46.5 9.3 116 441-561 239-361 (373)
175 PLN02645 phosphoglycolate phos 88.5 0.43 9.3E-06 51.2 3.8 44 591-650 28-71 (311)
176 PRK05446 imidazole glycerol-ph 88.5 0.56 1.2E-05 51.3 4.7 55 590-648 1-55 (354)
177 smart00577 CPDc catalytic doma 88.2 1.2 2.7E-05 42.2 6.4 69 591-661 2-82 (148)
178 TIGR01452 PGP_euk phosphoglyco 88.2 0.44 9.6E-06 50.2 3.7 42 592-649 3-44 (279)
179 PRK08942 D,D-heptose 1,7-bisph 87.8 0.84 1.8E-05 44.6 5.1 53 591-649 3-55 (181)
180 PLN02382 probable sucrose-phos 87.8 0.81 1.7E-05 51.2 5.5 57 587-656 5-62 (413)
181 PF08645 PNK3P: Polynucleotide 87.7 0.71 1.5E-05 44.7 4.4 54 592-648 1-54 (159)
182 PRK14089 ipid-A-disaccharide s 87.7 47 0.001 36.4 19.9 33 453-494 229-261 (347)
183 PHA02530 pseT polynucleotide k 87.4 1.2 2.6E-05 47.1 6.3 67 590-659 157-223 (300)
184 COG2179 Predicted hydrolase of 87.1 2.3 5.1E-05 41.3 7.4 66 588-667 25-90 (175)
185 PRK09552 mtnX 2-hydroxy-3-keto 87.0 0.55 1.2E-05 47.4 3.4 39 621-660 73-111 (219)
186 COG0381 WecB UDP-N-acetylgluco 86.5 57 0.0012 36.1 21.9 136 363-529 205-343 (383)
187 PRK11009 aphA acid phosphatase 85.7 2.2 4.7E-05 44.1 7.0 71 578-649 50-140 (237)
188 PRK01021 lpxB lipid-A-disaccha 85.4 84 0.0018 37.0 21.9 31 454-493 483-513 (608)
189 PF00343 Phosphorylase: Carboh 85.3 46 0.001 39.8 18.2 149 362-519 443-603 (713)
190 PF13344 Hydrolase_6: Haloacid 84.6 0.78 1.7E-05 40.8 2.7 49 594-658 1-52 (101)
191 PRK14986 glycogen phosphorylas 84.5 29 0.00064 42.0 16.3 150 362-519 542-702 (815)
192 PRK13582 thrH phosphoserine ph 83.5 0.72 1.6E-05 45.7 2.2 39 621-661 67-105 (205)
193 COG0058 GlgP Glucan phosphoryl 83.1 51 0.0011 39.6 17.3 137 362-511 486-630 (750)
194 COG3914 Spy Predicted O-linked 83.0 58 0.0013 37.8 17.1 109 366-496 431-539 (620)
195 TIGR01663 PNK-3'Pase polynucle 82.8 2.1 4.6E-05 49.3 5.9 60 588-650 165-224 (526)
196 COG3769 Predicted hydrolase (H 82.3 2.3 5.1E-05 43.1 5.2 51 591-657 7-57 (274)
197 PLN02954 phosphoserine phospha 82.3 1.3 2.7E-05 44.7 3.5 38 622-660 84-121 (224)
198 TIGR02250 FCP1_euk FCP1-like p 82.2 2.9 6.3E-05 40.3 5.8 72 588-661 3-95 (156)
199 TIGR01459 HAD-SF-IIA-hyp4 HAD- 80.3 2.6 5.6E-05 43.3 5.1 46 591-652 8-53 (242)
200 TIGR01675 plant-AP plant acid 79.4 2.3 4.9E-05 43.8 4.2 69 590-659 76-159 (229)
201 PTZ00445 p36-lilke protein; Pr 79.3 7.2 0.00016 39.6 7.6 70 579-652 31-104 (219)
202 TIGR03333 salvage_mtnX 2-hydro 79.3 1.6 3.4E-05 44.0 3.0 39 621-660 69-107 (214)
203 PF03031 NIF: NLI interacting 78.8 2.3 5.1E-05 40.4 3.9 74 593-668 2-82 (159)
204 PF12000 Glyco_trans_4_3: Gkyc 78.3 7.7 0.00017 38.1 7.3 51 210-262 42-95 (171)
205 PRK13225 phosphoglycolate phos 77.1 5.7 0.00012 41.8 6.6 40 621-661 141-180 (273)
206 TIGR01685 MDP-1 magnesium-depe 76.4 6.5 0.00014 38.7 6.3 70 591-661 2-84 (174)
207 PF06888 Put_Phosphatase: Puta 75.6 3.9 8.5E-05 42.2 4.7 41 621-661 70-111 (234)
208 TIGR02726 phenyl_P_delta pheny 75.5 5.2 0.00011 39.1 5.3 64 591-662 7-73 (169)
209 PF06941 NT5C: 5' nucleotidase 74.2 4.9 0.00011 39.7 4.9 41 620-661 71-122 (191)
210 TIGR01680 Veg_Stor_Prot vegeta 73.8 8.4 0.00018 40.6 6.6 62 590-652 100-174 (275)
211 TIGR01489 DKMTPPase-SF 2,3-dik 73.1 4.8 0.0001 38.8 4.5 40 621-661 71-110 (188)
212 TIGR01686 FkbH FkbH-like domai 72.9 7.7 0.00017 41.7 6.4 66 591-661 3-69 (320)
213 TIGR01456 CECR5 HAD-superfamil 72.4 6.9 0.00015 42.2 5.9 48 593-655 2-55 (321)
214 TIGR01460 HAD-SF-IIA Haloacid 72.3 4.5 9.8E-05 41.5 4.3 50 594-659 1-53 (236)
215 TIGR01533 lipo_e_P4 5'-nucleot 72.0 3.6 7.7E-05 43.3 3.4 62 589-651 73-146 (266)
216 cd04300 GT1_Glycogen_Phosphory 70.9 1.3E+02 0.0028 36.7 16.2 150 362-519 529-689 (797)
217 PRK14985 maltodextrin phosphor 70.8 69 0.0015 38.8 13.9 150 362-519 528-688 (798)
218 KOG3742 Glycogen synthase [Car 70.7 4.3 9.4E-05 45.1 3.8 71 452-526 493-577 (692)
219 TIGR02251 HIF-SF_euk Dullard-l 69.2 9.9 0.00021 36.7 5.6 68 592-661 2-79 (162)
220 TIGR02245 HAD_IIID1 HAD-superf 67.2 12 0.00026 37.5 5.9 59 589-657 19-78 (195)
221 KOG3120 Predicted haloacid deh 67.0 8.8 0.00019 39.1 4.7 41 622-662 84-124 (256)
222 PRK11590 hypothetical protein; 64.2 3.6 7.8E-05 41.3 1.5 39 622-661 95-134 (211)
223 COG0647 NagD Predicted sugar p 64.0 11 0.00024 39.7 5.1 52 592-659 9-63 (269)
224 COG0816 Predicted endonuclease 63.9 35 0.00076 32.4 8.0 73 380-462 40-112 (141)
225 PF12689 Acid_PPase: Acid Phos 62.3 12 0.00025 36.7 4.6 67 591-658 3-81 (169)
226 PF12038 DUF3524: Domain of un 61.8 23 0.00049 34.6 6.3 80 231-311 59-143 (168)
227 TIGR00338 serB phosphoserine p 61.4 4.5 9.8E-05 40.4 1.6 39 621-660 84-122 (219)
228 PF03767 Acid_phosphat_B: HAD 60.2 1.6 3.5E-05 44.8 -1.8 63 589-652 70-144 (229)
229 TIGR02093 P_ylase glycogen/sta 59.0 1.7E+02 0.0037 35.6 14.2 151 362-520 526-687 (794)
230 PF13528 Glyco_trans_1_3: Glyc 58.6 86 0.0019 32.9 10.9 68 448-523 239-316 (318)
231 TIGR00661 MJ1255 conserved hyp 58.0 31 0.00068 36.8 7.5 69 451-528 239-315 (321)
232 PF08235 LNS2: LNS2 (Lipin/Ned 53.1 23 0.00051 34.3 4.9 63 593-660 1-67 (157)
233 PF15024 Glyco_transf_18: Glyc 51.9 54 0.0012 38.0 8.3 82 445-528 327-431 (559)
234 TIGR02009 PGMB-YQAB-SF beta-ph 51.1 8 0.00017 37.3 1.4 34 621-657 87-120 (185)
235 PRK10422 lipopolysaccharide co 50.5 3E+02 0.0064 29.7 13.7 87 362-467 183-270 (352)
236 PRK12446 undecaprenyldiphospho 50.3 2.7E+02 0.0058 30.3 13.3 70 451-528 244-326 (352)
237 TIGR01491 HAD-SF-IB-PSPlk HAD- 50.1 8.8 0.00019 37.5 1.6 13 592-604 5-17 (201)
238 COG0241 HisB Histidinol phosph 49.1 23 0.00051 35.1 4.3 51 591-648 5-56 (181)
239 PF13477 Glyco_trans_4_2: Glyc 48.8 30 0.00065 31.5 4.8 40 224-264 68-108 (139)
240 PF14682 SPOB_ab: Sporulation 48.7 18 0.00038 33.2 3.1 74 548-649 38-112 (115)
241 TIGR01488 HAD-SF-IB Haloacid D 48.6 7.4 0.00016 37.2 0.7 11 593-603 1-11 (177)
242 PRK10725 fructose-1-P/6-phosph 48.5 9.9 0.00021 36.8 1.6 32 628-661 93-124 (188)
243 PRK10840 transcriptional regul 47.9 2.8E+02 0.0061 27.2 12.2 78 449-526 37-125 (216)
244 KOG2884 26S proteasome regulat 46.9 2E+02 0.0043 29.4 10.3 38 488-525 186-227 (259)
245 PHA02597 30.2 hypothetical pro 46.0 10 0.00022 37.3 1.3 27 621-649 73-99 (197)
246 TIGR01545 YfhB_g-proteo haloac 45.6 11 0.00024 38.0 1.5 37 622-659 94-131 (210)
247 TIGR01993 Pyr-5-nucltdase pyri 45.4 11 0.00024 36.5 1.5 36 622-661 84-119 (184)
248 PRK08238 hypothetical protein; 45.3 38 0.00082 38.8 5.8 39 622-661 72-110 (479)
249 TIGR02252 DREG-2 REG-2-like, H 45.2 11 0.00023 37.2 1.3 35 622-658 105-139 (203)
250 COG4822 CbiK Cobalamin biosynt 45.0 3.3E+02 0.0072 27.9 11.5 114 266-408 33-147 (265)
251 PLN02779 haloacid dehalogenase 44.1 13 0.00028 39.4 1.7 37 622-659 144-180 (286)
252 PRK14988 GMP/IMP nucleotidase; 43.8 12 0.00025 38.1 1.3 38 621-659 92-129 (224)
253 PRK13288 pyrophosphatase PpaX; 43.6 12 0.00026 37.3 1.4 39 621-660 81-119 (214)
254 TIGR01548 HAD-SF-IA-hyp1 haloa 43.4 9.4 0.0002 37.6 0.6 33 628-661 112-144 (197)
255 PRK10826 2-deoxyglucose-6-phos 42.9 14 0.0003 37.2 1.7 19 587-605 3-21 (222)
256 PRK11133 serB phosphoserine ph 42.6 10 0.00022 41.1 0.7 36 621-657 180-215 (322)
257 COG2248 Predicted hydrolase (m 42.0 4E+02 0.0088 28.1 11.9 21 223-243 57-77 (304)
258 COG1819 Glycosyl transferases, 41.1 5.3E+02 0.011 28.8 14.0 97 445-555 289-394 (406)
259 PRK11587 putative phosphatase; 41.0 14 0.00031 37.0 1.4 36 621-657 82-117 (218)
260 TIGR01990 bPGM beta-phosphoglu 41.0 12 0.00026 36.1 0.8 27 622-649 87-113 (185)
261 PRK10748 flavin mononucleotide 40.9 14 0.00031 37.7 1.4 27 622-650 113-139 (238)
262 TIGR02254 YjjG/YfnB HAD superf 40.7 14 0.0003 36.7 1.4 16 592-607 2-17 (224)
263 TIGR02253 CTE7 HAD superfamily 39.8 17 0.00037 36.1 1.9 37 622-659 94-130 (221)
264 PRK13478 phosphonoacetaldehyde 39.3 15 0.00033 38.1 1.5 13 592-604 5-17 (267)
265 PRK05282 (alpha)-aspartyl dipe 39.2 3.1E+02 0.0068 28.2 10.9 113 364-500 3-125 (233)
266 PRK13222 phosphoglycolate phos 39.1 15 0.00032 36.6 1.3 13 592-604 7-19 (226)
267 PRK13226 phosphoglycolate phos 38.9 15 0.00033 37.2 1.3 38 621-659 94-131 (229)
268 TIGR01422 phosphonatase phosph 38.6 16 0.00034 37.5 1.4 13 592-604 3-15 (253)
269 PRK10563 6-phosphogluconate ph 38.5 17 0.00036 36.4 1.5 35 622-660 88-122 (221)
270 COG4567 Response regulator con 38.0 99 0.0021 30.0 6.4 76 449-524 41-124 (182)
271 PLN03243 haloacid dehalogenase 37.4 17 0.00037 38.0 1.4 13 592-604 25-37 (260)
272 PF12710 HAD: haloacid dehalog 37.1 17 0.00037 35.0 1.3 29 629-658 96-124 (192)
273 PLN02770 haloacid dehalogenase 37.0 18 0.00038 37.3 1.4 13 592-604 23-35 (248)
274 PF09949 DUF2183: Uncharacteri 36.7 86 0.0019 28.0 5.5 34 379-416 49-82 (100)
275 TIGR03351 PhnX-like phosphonat 36.4 19 0.00041 35.9 1.5 16 592-607 2-17 (220)
276 PF10933 DUF2827: Protein of u 36.3 2.8E+02 0.0061 30.6 10.3 157 363-546 190-348 (364)
277 TIGR01549 HAD-SF-IA-v1 haloaci 35.6 16 0.00035 34.2 0.8 12 593-604 1-12 (154)
278 KOG2882 p-Nitrophenyl phosphat 35.6 57 0.0012 34.9 4.8 50 592-657 23-75 (306)
279 PF05152 DUF705: Protein of un 35.4 1E+02 0.0022 32.9 6.6 58 589-658 120-177 (297)
280 TIGR00250 RNAse_H_YqgF RNAse H 35.2 1.7E+02 0.0037 27.2 7.6 71 380-460 35-105 (130)
281 PRK09449 dUMP phosphatase; Pro 34.8 19 0.00042 36.0 1.3 36 622-659 95-130 (224)
282 COG3660 Predicted nucleoside-d 34.6 3.9E+02 0.0084 28.4 10.5 32 231-262 70-101 (329)
283 TIGR02193 heptsyl_trn_I lipopo 34.4 5.7E+02 0.012 26.9 13.4 24 444-467 239-262 (319)
284 TIGR02137 HSK-PSP phosphoserin 34.0 19 0.00041 36.2 1.0 38 622-661 68-105 (203)
285 TIGR01493 HAD-SF-IA-v2 Haloaci 33.7 18 0.00039 34.6 0.8 14 593-606 1-14 (175)
286 PF02601 Exonuc_VII_L: Exonucl 33.5 3.7E+02 0.0079 28.7 11.0 41 352-392 31-71 (319)
287 PRK13223 phosphoglycolate phos 33.3 22 0.00047 37.3 1.4 37 622-659 101-137 (272)
288 TIGR01449 PGP_bact 2-phosphogl 33.2 17 0.00037 35.9 0.6 11 594-604 1-11 (213)
289 TIGR02247 HAD-1A3-hyp Epoxide 32.4 24 0.00052 35.0 1.5 28 622-650 94-121 (211)
290 PRK09456 ?-D-glucose-1-phospha 32.1 24 0.00053 34.7 1.5 34 622-656 84-117 (199)
291 TIGR01454 AHBA_synth_RP 3-amin 32.0 18 0.0004 35.7 0.6 11 594-604 1-11 (205)
292 COG0637 Predicted phosphatase/ 31.9 24 0.00052 35.8 1.4 40 621-661 85-124 (221)
293 PRK00109 Holliday junction res 31.4 2.1E+02 0.0046 26.9 7.6 70 381-460 42-111 (138)
294 TIGR01428 HAD_type_II 2-haloal 30.8 26 0.00056 34.4 1.4 13 592-604 2-14 (198)
295 PF06258 Mito_fiss_Elm1: Mitoc 30.5 7.1E+02 0.015 26.8 14.3 32 449-483 218-249 (311)
296 PLN00414 glycosyltransferase f 30.4 8.4E+02 0.018 27.6 14.7 109 445-562 317-441 (446)
297 COG4087 Soluble P-type ATPase 30.4 47 0.001 31.3 2.8 49 594-659 17-65 (152)
298 PRK05632 phosphate acetyltrans 30.0 1.6E+02 0.0035 35.3 8.1 109 445-554 231-349 (684)
299 COG1570 XseA Exonuclease VII, 29.5 8.8E+02 0.019 27.5 13.1 97 350-482 150-246 (440)
300 COG0546 Gph Predicted phosphat 28.1 30 0.00065 34.9 1.4 13 592-604 5-17 (220)
301 TIGR01490 HAD-SF-IB-hyp1 HAD-s 28.0 26 0.00057 34.3 0.9 12 593-604 1-12 (202)
302 TIGR01544 HAD-SF-IE haloacid d 27.7 1.7E+02 0.0037 31.0 6.9 39 620-659 119-157 (277)
303 KOG0331 ATP-dependent RNA heli 26.9 3.1E+02 0.0068 31.7 9.2 94 364-469 129-225 (519)
304 PF04101 Glyco_tran_28_C: Glyc 26.7 49 0.0011 31.5 2.5 71 451-529 64-146 (167)
305 PF03016 Exostosin: Exostosin 26.5 85 0.0018 32.7 4.5 70 449-521 226-299 (302)
306 PLN02670 transferase, transfer 25.8 2.4E+02 0.0051 32.3 8.1 110 445-563 344-467 (472)
307 PF06258 Mito_fiss_Elm1: Mitoc 25.7 8.6E+02 0.019 26.1 16.4 30 231-260 57-87 (311)
308 TIGR01525 ATPase-IB_hvy heavy 25.1 1.2E+02 0.0026 35.2 5.8 67 585-662 358-424 (556)
309 PF11440 AGT: DNA alpha-glucos 24.8 8.3E+02 0.018 26.2 11.0 262 223-526 53-352 (355)
310 PRK12704 phosphodiesterase; Pr 24.8 2.7E+02 0.0058 32.4 8.4 56 469-526 228-296 (520)
311 PF00072 Response_reg: Respons 24.7 2.7E+02 0.0058 23.7 6.7 74 449-522 31-112 (112)
312 PF05159 Capsule_synth: Capsul 24.6 6E+02 0.013 26.2 10.4 101 361-492 115-223 (269)
313 TIGR01509 HAD-SF-IA-v3 haloaci 24.4 33 0.00072 32.7 0.8 31 621-652 84-114 (183)
314 COG1011 Predicted hydrolase (H 23.9 43 0.00092 33.3 1.6 34 621-656 98-131 (229)
315 PF13419 HAD_2: Haloacid dehal 23.6 73 0.0016 29.5 3.0 40 621-661 76-115 (176)
316 PRK04128 1-(5-phosphoribosyl)- 23.6 2.1E+02 0.0046 29.3 6.6 28 578-605 31-58 (228)
317 PF13419 HAD_2: Haloacid dehal 23.6 37 0.0008 31.6 1.0 12 594-605 1-12 (176)
318 PLN02940 riboflavin kinase 23.5 41 0.00088 37.3 1.4 13 592-604 12-24 (382)
319 PRK11475 DNA-binding transcrip 23.0 4.6E+02 0.0099 26.3 8.8 56 471-526 53-114 (207)
320 PHA03392 egt ecdysteroid UDP-g 22.8 1.2E+03 0.026 26.8 15.7 74 444-528 350-433 (507)
321 cd04248 AAK_AK-Ectoine AAK_AK- 22.8 5.3E+02 0.011 27.8 9.5 22 625-648 177-198 (304)
322 cd03789 GT1_LPS_heptosyltransf 22.8 6.7E+02 0.015 25.8 10.4 94 362-482 121-216 (279)
323 COG4359 Uncharacterized conser 22.8 44 0.00096 33.3 1.3 16 590-605 2-17 (220)
324 COG0560 SerB Phosphoserine pho 22.6 42 0.0009 34.0 1.2 36 621-657 76-111 (212)
325 PF00389 2-Hacid_dh: D-isomer 22.1 6E+02 0.013 23.0 9.7 75 440-521 20-101 (133)
326 PLN02575 haloacid dehalogenase 22.0 42 0.0009 37.3 1.1 13 592-604 132-144 (381)
327 COG3882 FkbH Predicted enzyme 22.0 2.5E+02 0.0054 32.2 7.0 87 578-665 209-297 (574)
328 PRK13396 3-deoxy-7-phosphohept 21.7 1E+03 0.022 26.2 11.7 65 444-526 169-233 (352)
329 PLN02167 UDP-glycosyltransfera 21.4 3.9E+02 0.0085 30.5 8.9 74 445-528 345-435 (475)
330 PF03796 DnaB_C: DnaB-like hel 20.6 1.5E+02 0.0032 30.6 4.9 68 575-651 110-182 (259)
331 PLN03007 UDP-glucosyltransfera 20.4 4.6E+02 0.01 29.9 9.2 74 445-528 350-441 (482)
332 KOG4626 O-linked N-acetylgluco 20.3 8.7E+02 0.019 29.0 10.9 164 376-565 770-944 (966)
No 1
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=3.2e-147 Score=1286.04 Aligned_cols=663 Identities=85% Similarity=1.306 Sum_probs=617.7
Q ss_pred CCCCCCCCCCCCCChhhHHHHhhhhhHHHhhhhhccCCCCCCCC-CCCCcccccchhccccCCCCCCcccccCCCCCC--
Q 005855 1 MPGNSYNSNSSNIPPDRVTRLVREKIERDLRKSSRASHPNDVTD-NGGREVFEDEQRLRDGDNLGPSIVDEDLEGPAS-- 77 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (673)
||||+|+|++...+.+|++||+|+ ||||+.++++...++.+ +.+.++.|+++..+|..+.++..+++..+|.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (934)
T PLN03064 1 MPGNKYNGQSSVNPTSRVERLLRE---RELRKSERSSNANDDLDTNAGSEAFENDLRLSEGDNDSSSHVEQLLEGAAAES 77 (934)
T ss_pred CCCcccCCCCCCCCCchHHHHHHH---HHHHhhhcccccccccccchhhhhhhhhccccccccccccchHHHhhhhhhhc
Confidence 899999999977888899999999 99999999998666666 778899999999999999999999999998733
Q ss_pred CCCCCcccCCCCCCCCCcEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhcccccCCcEEEEeCCCCCCCchhhHHHHH
Q 005855 78 TPNEGCERLDGRTFSRQRLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTK 157 (673)
Q Consensus 78 ~~~~~~~~~~~~~~~~~rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~~~~~~~WvGw~g~~~~~~~~~~~~~~ 157 (673)
...++|.+++++..-++||||||||||+.++++++|.|++++++|||+++|.+++..+++||||+|..+++++++..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~rlIiVSNRlPv~~~~~~~g~~~~~~s~GGLvsaL~~~~~~~~~WVGw~g~~~~~~~~~~~~~~ 157 (934)
T PLN03064 78 ALPDGCERQEGRRPLRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTK 157 (934)
T ss_pred cCCcccccccCCCCCCCCEEEEECCCCcceeecCCCceEEeECCCCcHHHhcccccCCeEEEeeCCCCCCCcchhHHHHH
Confidence 35688888888766689999999999999998888999999999999999999977899999999988776656666777
Q ss_pred hhcCceEEEEecChHHHHHHHHHHHHHhhHhhhcCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Q 005855 158 ALAEKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKHYKDGDVVWC 237 (673)
Q Consensus 158 ~~~~~~~~pV~l~~~~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~~~w~~Y~~vN~~fA~~i~~~~~~~DvVwv 237 (673)
.+.+++|+||||+++++++||+||||++|||+|||++..+.++....+.++.+|++|++||++||++|++.+++||+|||
T Consensus 158 ~l~~~~~~pV~l~~~~~~~~Y~gfcn~~LWPlfHy~~~~~~~~~~~~~~~~~~w~~Y~~vN~~FA~~i~~~~~~gD~VWV 237 (934)
T PLN03064 158 ALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNEHYEEGDVVWC 237 (934)
T ss_pred HhccCceEEEeCCHHHHHHHHHHhhhcccchhhcCcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 88999999999999999999999999999999999854443332222334467999999999999999999999999999
Q ss_pred eCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCC
Q 005855 238 HDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPE 317 (673)
Q Consensus 238 HDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~ 317 (673)
||||||+||++||++.|+++||||||||||++|+||+||+|++||+|||+||+|||||++|++||+++|.+++|++....
T Consensus 238 HDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~ 317 (934)
T PLN03064 238 HDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPE 317 (934)
T ss_pred ecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccC
Q 005855 318 GVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRG 397 (673)
Q Consensus 318 ~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~ 397 (673)
++.++||.++|.++|+|||++.|.+....+++++++++++++++++++|++|||||+.|||+++|+||++||++||+|++
T Consensus 318 ~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~ 397 (934)
T PLN03064 318 GVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRD 397 (934)
T ss_pred eEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEEEEeeccccccCHHHHHHHHHHHHHhCccccC
Confidence 89999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHH
Q 005855 398 KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSY 477 (673)
Q Consensus 398 ~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~l 477 (673)
+|+||||+.|+|+++++|++|++++.++|++||++||+.+|.||+|+.+.++++++.+||++|||||+||++||||||++
T Consensus 398 kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~ 477 (934)
T PLN03064 398 KVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSY 477 (934)
T ss_pred CEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHH
Q 005855 478 EFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVS 557 (673)
Q Consensus 478 EamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~ 557 (673)
||||||.+++|+||+|||+|++++|+.+|++|||||++++|+||.+||+|+++||+.|+++++++|.+||+..|+++|++
T Consensus 478 Eyva~~~~~~GvLILSEfaGaa~~L~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~ 557 (934)
T PLN03064 478 EFVACQDSKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVS 557 (934)
T ss_pred HHHHhhcCCCCCeEEeCCCchHHHhCCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 99999998999999999999999997789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhccccCCCCcchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcC
Q 005855 558 ELNDTVVEAQLRIKQVPPSLREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHD 637 (673)
Q Consensus 558 ~L~~~~~~~~~~~~~~~~~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d 637 (673)
+|+.+..+.+.+..+.++.|+.+.++++|.++++|+|||||||||+|++++|+++..++.++.+.|+++++++|+.||+|
T Consensus 558 ~L~~~~~~~~~~~~~~~~~l~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~d 637 (934)
T PLN03064 558 ELNDTVVEAQLRTRQVPPQLPPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSD 637 (934)
T ss_pred HHHHHHhhhhccccccCCCCCHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhC
Confidence 99998776666666667899999999999999999999999999999999997666777767889999999999999999
Q ss_pred CCCeEEEEcCCCHHhHHHHhcccccceeec
Q 005855 638 PKTTIVVLSGSDRNVLDKVLDLVLFIFFSG 667 (673)
Q Consensus 638 ~~n~V~ViSGR~~~~L~~~~~~~~~~~~~~ 667 (673)
|+|+|||||||++++|++||+.+ ++.|+|
T Consensus 638 p~n~VaIVSGR~~~~Le~~fg~~-~L~LaA 666 (934)
T PLN03064 638 PKTTIVVLSGSDRSVLDENFGEF-DMWLAA 666 (934)
T ss_pred CCCeEEEEeCCCHHHHHHHhCCC-CceEEe
Confidence 99999999999999999999998 455544
No 2
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=100.00 E-value=1.5e-130 Score=1152.07 Aligned_cols=559 Identities=37% Similarity=0.677 Sum_probs=513.1
Q ss_pred CCcEEEEEcCCCcceEecCC--CcEEEEecCCcHHHhhccc-c--cCCcEEEEeCCCCCCCchhhHHHHHhhcCceEEEE
Q 005855 93 RQRLLVVANRLPVSAIRRGE--DSWSLEISAGGLVSALLGV-K--EFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPV 167 (673)
Q Consensus 93 ~~rlivvsnrlP~~~~~~~~--g~~~~~~~~ggL~~~l~~~-~--~~~~~WvGw~g~~~~~~~~~~~~~~~~~~~~~~pV 167 (673)
++||||||||||+.++++++ ++|++++++|||+++|.++ . ..+++||||+|..++++++++.....+++|+|+||
T Consensus 59 ~~rliiVsnrlPv~~~~~~~g~~~~~~~~~~ggL~~~l~~~~~~~~~~~~wvG~~~~~~~~~~~~~~~~~l~~~~~~~pv 138 (854)
T PLN02205 59 KDRIIIVANQLPIRAQRKSDGSKGWIFSWDENSLLLQLKDGLGDDEIEVIYVGCLKEEIHLNEQEEVSQILLETFKCVPT 138 (854)
T ss_pred CCcEEEEEccCceEEEEcCCCCcceEEEeCCCchHHHHhhhhhcccCceEEEEecCCCCCchhhhhHHHHHhcCceEEEe
Confidence 57999999999999998653 6899999999999999977 3 47899999999887765444444666788999999
Q ss_pred ecChHHHHHHHHHHHHHhhHhhhcCCC-CCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCccchh
Q 005855 168 FLDEDIVHQYYNGYCNNILWPLFHYLG-LPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKD-GDVVWCHDYHLMF 244 (673)
Q Consensus 168 ~l~~~~~~~~Y~gf~n~~LWPlfH~~~-~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~-~DvVwvHDyhl~l 244 (673)
||+++++++||+||||++|||+|||+. ..+ .....|+ .+|++|++||++||++|++.+++ +|+|||||||||+
T Consensus 139 ~l~~~~~~~~Y~gf~n~~LWPlfH~~~~~~~----~~~~~f~~~~w~~Y~~vN~~FA~~v~~~~~~~~d~VWVhDYhL~l 214 (854)
T PLN02205 139 FLPPDLFTRYYHGFCKQQLWPLFHYMLPLSP----DLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMV 214 (854)
T ss_pred eCCHHHHHHHHHhhhhccccchhccCCCCCc----cccccccHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchhhH
Confidence 999999999999999999999999984 332 1123577 46999999999999999999998 6999999999999
Q ss_pred HHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCC----Ccee
Q 005855 245 LPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTP----EGVE 320 (673)
Q Consensus 245 lp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~----~~i~ 320 (673)
+|.+||+++|+++||||||||||++|+||+||||++||+|||+||+|||||++|++||++||+|++|+++.. .+++
T Consensus 215 lP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~ 294 (854)
T PLN02205 215 LPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLE 294 (854)
T ss_pred HHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754 3578
Q ss_pred eCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhc--CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCc
Q 005855 321 DQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA--GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGK 398 (673)
Q Consensus 321 ~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~--~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~ 398 (673)
|+||.++|.++|+|||++.|......+++.+++++++++++ ++++|++|||||+.|||.++|+||++||++||+|+++
T Consensus 295 ~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gk 374 (854)
T PLN02205 295 YYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGK 374 (854)
T ss_pred ECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999999999899999999985 6899999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHH
Q 005855 399 VVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYE 478 (673)
Q Consensus 399 v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lE 478 (673)
|+||||+.|+|+++++|++++++++++|++||++||+.+|.||+|+++.++++|+.|||++|||+++||+|||||||++|
T Consensus 375 vvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~E 454 (854)
T PLN02205 375 VVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYE 454 (854)
T ss_pred EEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccC---------------CCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH
Q 005855 479 FVACQDL---------------KKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV 543 (673)
Q Consensus 479 amA~~~~---------------~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v 543 (673)
|+|||.+ ++|+||+|||+||+++| .+|++|||||++++|+||.+||+||.+||+.|+++++++|
T Consensus 455 yia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L-~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v 533 (854)
T PLN02205 455 YIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL-SGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYV 533 (854)
T ss_pred eeEEccCccccccccccccccCCCCceEeeeccchhHHh-CcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999863 57999999999999999 7899999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHhHHHhh----------hcccc-----CCCCcchHHHHHHHhhccCeEEEEcccccccCCCCC
Q 005855 544 TTHTAQEWAETFVSELNDTVVEAQ----------LRIKQ-----VPPSLREADSIERYLRSNNRLLILGFNATLTEPVDT 608 (673)
Q Consensus 544 ~~~~~~~W~~~fl~~L~~~~~~~~----------~~~~~-----~~~~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~ 608 (673)
.+||+.+|+++||.+|+.+++.+. +.++. .+++|+++.++++|+++++|+|||||||||+|..+
T Consensus 534 ~~~d~~~W~~~fl~~l~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~- 612 (854)
T PLN02205 534 STHDVGYWARSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQAS- 612 (854)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccCHHHHHHHHHhhcCeEEEEecCCcccCCcc-
Confidence 999999999999999999865431 11111 26889999999999999999999999999998753
Q ss_pred CCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccccceeec
Q 005855 609 PGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLFIFFSG 667 (673)
Q Consensus 609 p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~~~~~~ 667 (673)
....|+++++++|++||+|++|+|+|+|||+++.|++||+.++.+.++|
T Consensus 613 ----------~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~~l~laa 661 (854)
T PLN02205 613 ----------IDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPCEKLGIAA 661 (854)
T ss_pred ----------ccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCCCCeEEEE
Confidence 2457889999999999999999999999999999999999987666654
No 3
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=1.3e-127 Score=1127.37 Aligned_cols=567 Identities=73% Similarity=1.200 Sum_probs=521.0
Q ss_pred CCcEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhcccccCCcEEEEeCCCCCCCchhhHHHHHhhcCceEEEEecChH
Q 005855 93 RQRLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDED 172 (673)
Q Consensus 93 ~~rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~~~~~~~WvGw~g~~~~~~~~~~~~~~~~~~~~~~pV~l~~~ 172 (673)
++||||||||||+.++++++|.|++++++|||+++|.+++..+++||||+|..+++++++..+...+.+++|+|||| ++
T Consensus 10 ~~rliiVsnrlp~~~~~~~~~~~~~~~~~ggl~~al~~~~~~~~~Wvgw~g~~~~~~~~~~~~~~~~~~~~~~pv~l-~~ 88 (797)
T PLN03063 10 RPRLLVVANRLPVSAKRTGEDSWSLEMSPGGLVSALLGVKEFETKWIGWPGVDVHDEIGKAALTESLAEKGCIPVFL-NE 88 (797)
T ss_pred CCCEEEEECCCCccceecCCCceEEeeCCCCHHHHHHHHHhcCceEEEeCCCcCCcccchhHHHHHhhcCCeEEeeh-HH
Confidence 78999999999999888777999999999999999999966699999999987665545556677788999999999 99
Q ss_pred HHHHHHHHHHHHhhHhhhcCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhh
Q 005855 173 IVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEY 252 (673)
Q Consensus 173 ~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~ 252 (673)
++++||+||||++|||+|||++..+.+.......++.+|++|++||++||++|++.+++||+||||||||+++|++||++
T Consensus 89 ~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~~~w~~Y~~vN~~FA~~i~~~~~~~d~vWvhDYhL~llp~~lR~~ 168 (797)
T PLN03063 89 VFDQYYNGYCNNILWPIFHYMGLPQEDRHDATRTFESQYDAYKKANRMFLDVVKENYEEGDVVWCHDYHLMFLPQYLKEY 168 (797)
T ss_pred HHHHHHHHHHhhhcchhhcCcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhHHHHHHHh
Confidence 99999999999999999999843321111122234567999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEee
Q 005855 253 NSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFP 332 (673)
Q Consensus 253 ~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP 332 (673)
.|+++||||||||||++|+||+||+|++||+|||+||+|||||++|++||+++|+++++++....++.++|+.++|.++|
T Consensus 169 ~~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP 248 (797)
T PLN03063 169 NNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFP 248 (797)
T ss_pred CCCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999988777899999999999999
Q ss_pred cCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCCh
Q 005855 333 IGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDV 412 (673)
Q Consensus 333 ~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~ 412 (673)
+|||++.|.+....+++.+..+.+++.++++++|++|||||+.||+..+|+||++|++++|+++++++|+||++|+++++
T Consensus 249 ~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~ 328 (797)
T PLN03063 249 IGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDV 328 (797)
T ss_pred cccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCch
Confidence 99999999987776777777778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEE
Q 005855 413 PEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLIL 492 (673)
Q Consensus 413 ~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVl 492 (673)
++|+++++++++++++||++||+.+|.||+|+.+.++.+++.++|++|||||+||++||||||++||||||..++|++|+
T Consensus 329 ~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl 408 (797)
T PLN03063 329 PEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL 408 (797)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878899999
Q ss_pred eCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHHhhhcccc
Q 005855 493 SEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVVEAQLRIKQ 572 (673)
Q Consensus 493 Se~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~~~~~~~~ 572 (673)
||++|+++++|.+|++|||||++++|+||.++|+|+++||++|+++++++|.+||+.+|++.|+++|..+..+.......
T Consensus 409 Se~~G~~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~~~~~~~~~ 488 (797)
T PLN03063 409 SEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDIIVEAELRTRN 488 (797)
T ss_pred eCCcCchhhhcCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhhhhhhcccC
Confidence 99999999997799999999999999999999999999999999999999999999999999999999988765544556
Q ss_pred CCCCcchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 573 VPPSLREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 573 ~~~~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
.++.|+.+.++++|+++++|+|||||||||+|+.++|.+ ...+.|+++++++|++||+||+|+|+|||||++++
T Consensus 489 ~~~~l~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~ 562 (797)
T PLN03063 489 IPLELPEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIK------EMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI 562 (797)
T ss_pred CCCCCCHHHHHHHHHhccCeEEEEecCccccCCCCCccc------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH
Confidence 678899999999999999999999999999998764411 14678999999999999999999999999999999
Q ss_pred HHHHhcccccceeec
Q 005855 653 LDKVLDLVLFIFFSG 667 (673)
Q Consensus 653 L~~~~~~~~~~~~~~ 667 (673)
|++||+..+ +.++|
T Consensus 563 L~~~~~~~~-l~l~a 576 (797)
T PLN03063 563 LDKNFGEYN-IWLAA 576 (797)
T ss_pred HHHHhCCCC-CcEEE
Confidence 999999864 54444
No 4
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=100.00 E-value=2e-118 Score=1049.20 Aligned_cols=550 Identities=43% Similarity=0.769 Sum_probs=509.1
Q ss_pred CcEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCc--hhhHHHHHhhcCceEEEEecC
Q 005855 94 QRLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDE--IGQKALTKALAEKRCIPVFLD 170 (673)
Q Consensus 94 ~rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~--~~~~~~~~~~~~~~~~pV~l~ 170 (673)
+||||||||+|+.++++ +|.|++++++|||+++|.++ +..+++||||+|...+.. .++..++..+.+|+|+||||+
T Consensus 1 ~~livvsnr~p~~~~~~-~~~~~~~~~~ggl~~~l~~~~~~~~~~wvg~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 79 (726)
T PRK14501 1 SRLIIVSNRLPVTVVRE-DGGVELTPSVGGLATGLRSFHERGGGLWVGWPGLDLEEESEEQRARIEPRLEELGLVPVFLS 79 (726)
T ss_pred CCEEEEEcCCCcceeec-CCceEEeeCCCchHHHHHHHhhcCCeEEEEeCCCCccccchhhhhhhhhhccCceEEEEeCC
Confidence 48999999999998865 46899999999999999998 778999999999775542 222334566789999999999
Q ss_pred hHHHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHH
Q 005855 171 EDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCL 249 (673)
Q Consensus 171 ~~~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~L 249 (673)
++++++||+||||++|||+|||++... .|+ .+|++|++||++||++|++.++++|+||||||||+++|++|
T Consensus 80 ~~~~~~~y~gf~n~~lWp~~H~~~~~~--------~~~~~~w~~Y~~vN~~fA~~~~~~~~~~d~vwvhDYhl~l~p~~l 151 (726)
T PRK14501 80 AEEVDRYYEGFCNSTLWPLFHYFPEYT--------EFEDRFWESYERVNQRFAEAIAAIARPGDVVWVHDYQLMLLPAML 151 (726)
T ss_pred HHHHHHHHHHhhhccccchhcccCccc--------CcCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCchhhhHHHHH
Confidence 999999999999999999999996443 477 55999999999999999999999999999999999999999
Q ss_pred HhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEE
Q 005855 250 KEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVA 329 (673)
Q Consensus 250 r~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~ 329 (673)
|++.|+++||||+|+|||++++|+++|++++|++|||+||+|||||++|++||+++|.++++++.....++++|+.++|.
T Consensus 152 r~~~~~~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~ 231 (726)
T PRK14501 152 RERLPDARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVD 231 (726)
T ss_pred HhhCCCCcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999887777889999999999
Q ss_pred EeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCC
Q 005855 330 AFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTR 409 (673)
Q Consensus 330 viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr 409 (673)
++|+|||++.|.+...++++.+..+.+++.++++++|++|||+++.||+..+|+||++|++++|+++++++|+|||+|+|
T Consensus 232 v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr 311 (726)
T PRK14501 232 AFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSR 311 (726)
T ss_pred EEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCC
Confidence 99999999999998777777777778888888999999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCce
Q 005855 410 TDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGV 489 (673)
Q Consensus 410 ~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~ 489 (673)
++.++|+++++++++++++||++||+.+|.||+++.+.+++++++++|++|||||+||++||||||++||||||.+++|+
T Consensus 312 ~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~ 391 (726)
T PRK14501 312 TGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGV 391 (726)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCce
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred EEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHHhhhc
Q 005855 490 LILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVVEAQLR 569 (673)
Q Consensus 490 lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~~~~~ 569 (673)
+|+|+++|+++++ .+|++|||+|++++|+||.++|+|+.+|++.|++++++++.+||+..|+++|++.|+++.+++...
T Consensus 392 ~vls~~~G~~~~l-~~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~~~~~~ 470 (726)
T PRK14501 392 LILSEMAGAAAEL-AEALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAAEKNKAF 470 (726)
T ss_pred EEEecccchhHHh-CcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999 689999999999999999999999999999999999999999999999999999999987654322
Q ss_pred cccCCCCcchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 570 IKQVPPSLREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 570 ~~~~~~~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
....++.|+.+.++++|+++++|||+|||||||++...+| ..+.|+++++++|++|++||+|.|+|+|||+
T Consensus 471 ~~~~~~~~~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~---------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~ 541 (726)
T PRK14501 471 ASKPITPAAAEEIIARYRAASRRLLLLDYDGTLVPFAPDP---------ELAVPDKELRDLLRRLAADPNTDVAIISGRD 541 (726)
T ss_pred ccccCCccCHHHHHHHHHhccceEEEEecCccccCCCCCc---------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC
Confidence 2334577899999999999999999999999999987766 4678899999999999999999999999999
Q ss_pred HHhHHHHhccccc
Q 005855 650 RNVLDKVLDLVLF 662 (673)
Q Consensus 650 ~~~L~~~~~~~~~ 662 (673)
+..|+++|+.++.
T Consensus 542 ~~~l~~~~~~~~l 554 (726)
T PRK14501 542 RDTLERWFGDLPI 554 (726)
T ss_pred HHHHHHHhCCCCe
Confidence 9999999998763
No 5
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=100.00 E-value=1.1e-117 Score=975.75 Aligned_cols=451 Identities=35% Similarity=0.639 Sum_probs=417.9
Q ss_pred CcEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCchhhHHHHHh-hcCceEEEEecCh
Q 005855 94 QRLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEIGQKALTKA-LAEKRCIPVFLDE 171 (673)
Q Consensus 94 ~rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~~~~~~~~~-~~~~~~~pV~l~~ 171 (673)
+||||||||+|+.. +. +.++|||++||.++ +..+|+||||+|....++ . .+... -.+++|.||+|++
T Consensus 2 ~rLivVSNRlp~~~-----~~---~~~~GGL~~aL~~~l~~~~g~WvGW~g~~~~~~--~-~~~~~~~~~~~~~~v~L~~ 70 (474)
T PRK10117 2 SRLVVVSNRIAPPD-----EH---KASAGGLAVGILGALKAAGGLWFGWSGETGNED--Q-PLKKVKKGNITWASFNLSE 70 (474)
T ss_pred CCEEEEECCCcCCC-----CC---CcCCCCcHHHHHHHHHhcCceEEEecCCCCCCc--c-cchhhhcCCceEEEecCCH
Confidence 68999999999632 11 45789999999999 788999999999753321 1 12222 2568999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHH
Q 005855 172 DIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLK 250 (673)
Q Consensus 172 ~~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr 250 (673)
+++++||+||||++|||+|||+.... .|+ ++|++|++||++||++|++.+++||+||||||||+++|++||
T Consensus 71 ~~~~~yY~gfsn~~LWPlfHy~~~~~--------~~~~~~w~~Y~~VN~~FA~~v~~~~~~~D~VWVHDYhL~llp~~LR 142 (474)
T PRK10117 71 QDYDEYYNQFSNAVLWPAFHYRLDLV--------QFQRPAWEGYLRVNALLADKLLPLLKDDDIIWIHDYHLLPFASELR 142 (474)
T ss_pred HHHHHHHhhhhhcchhhhhCCCCCcc--------CcCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccHhhHHHHHHH
Confidence 99999999999999999999996433 366 569999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCC-CceeeCCeeeEEE
Q 005855 251 EYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTP-EGVEDQGRLTRVA 329 (673)
Q Consensus 251 ~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~-~~i~~~gr~~~v~ 329 (673)
++.|+++||||||||||++|+|++||++++|++|||+||+|||||++|++||++||++++|++... ..+.++||.++|.
T Consensus 143 ~~~~~~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~ 222 (474)
T PRK10117 143 KRGVNNRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTE 222 (474)
T ss_pred HhCCCCcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987644 4567889999999
Q ss_pred EeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCC
Q 005855 330 AFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTR 409 (673)
Q Consensus 330 viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr 409 (673)
++|+|||++.|...+..+ +....+.++++++++++|++||||||+|||+++|+||++||++||+++++|+|+||+.|+|
T Consensus 223 ~~PigID~~~~~~~a~~~-~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR 301 (474)
T PRK10117 223 VYPIGIEPDEIAKQAAGP-LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR 301 (474)
T ss_pred EEECeEcHHHHHHHhhch-HHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCC
Confidence 999999999999887755 4667788999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhcc-CCCc
Q 005855 410 TDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKG 488 (673)
Q Consensus 410 ~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~-~~~g 488 (673)
+++++|++++++|+++|++||++||+.+|.||+|+++.++++++.++|++|||+++||++||||||++||+|||. +++|
T Consensus 302 ~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~G 381 (474)
T PRK10117 302 GDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPG 381 (474)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 7889
Q ss_pred eEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHH
Q 005855 489 VLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVVE 565 (673)
Q Consensus 489 ~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~ 565 (673)
+||+|||+|++++| .+|++|||||++++|+||.+||+||.+||++|+++++++|.+||+.+|+++||++|..+...
T Consensus 382 vLILSefAGaA~~L-~~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 382 VLVLSQFAGAANEL-TSALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPR 457 (474)
T ss_pred cEEEecccchHHHh-CCCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhc
Confidence 99999999999999 78999999999999999999999999999999999999999999999999999999987644
No 6
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=100.00 E-value=3.5e-116 Score=973.36 Aligned_cols=454 Identities=32% Similarity=0.607 Sum_probs=421.6
Q ss_pred EEcCCCcceEecCCCc--EEEEecCCcHHHhhccc-c-cCCcEEEEeCCCCCCCchhh-HHHH-HhhcCceEEEEecChH
Q 005855 99 VANRLPVSAIRRGEDS--WSLEISAGGLVSALLGV-K-EFEARWIGWAGVNVPDEIGQ-KALT-KALAEKRCIPVFLDED 172 (673)
Q Consensus 99 vsnrlP~~~~~~~~g~--~~~~~~~ggL~~~l~~~-~-~~~~~WvGw~g~~~~~~~~~-~~~~-~~~~~~~~~pV~l~~~ 172 (673)
||||||+.++++++|. |++++++|||++||.++ + ..+|+||||+|...+++++. .... ....+++|.||+|+++
T Consensus 1 vsnRlP~~~~~~~~g~~~~~~~~s~gGL~~al~~~l~~~~~g~Wvgw~g~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 80 (487)
T TIGR02398 1 LYHRLPYDEFRGADGKLQRRDPTSPNGIIPTLLSFFGDGRAGTWVAWAEHDENSGETFDSHMTVPAEYKLTAARIPLSKE 80 (487)
T ss_pred CCcCCCceeEECCCCCceEEeccCCCchHHHHHHHhhcccceEEEeeCCCCcccccccccccccccCCceeEEEEeCCHH
Confidence 7999999999876665 66799999999999988 4 47799999999753221111 1111 2235689999999999
Q ss_pred HHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHh
Q 005855 173 IVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKE 251 (673)
Q Consensus 173 ~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~ 251 (673)
++++||+||||++|||+|||++... .|+ ++|++|++||++||++|++.++++|+||||||||+++|++||+
T Consensus 81 ~~~~~Y~gf~n~~LWPlfH~~~~~~--------~~~~~~w~~Y~~vN~~FA~~i~~~~~~~d~vWVhDYhL~llp~~LR~ 152 (487)
T TIGR02398 81 QVDIFYHITSKEAFWPILHTFPERF--------QFREDDWQVFLKVNRAFAEAACLEAAEGATVWVHDYNLWLVPGYIRQ 152 (487)
T ss_pred HHHHHHhhhhhccccccccCCcccc--------CcCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHH
Confidence 9999999999999999999996443 476 5699999999999999999999999999999999999999999
Q ss_pred hCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCC--------------
Q 005855 252 YNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPE-------------- 317 (673)
Q Consensus 252 ~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~-------------- 317 (673)
+.|+++||||||||||++|+|++||+|++||+|||+||+|||||++|++||++||++++|++....
T Consensus 153 ~~~~~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~ 232 (487)
T TIGR02398 153 LRPDLKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTAL 232 (487)
T ss_pred hCCCCeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred -------ceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHH
Q 005855 318 -------GVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390 (673)
Q Consensus 318 -------~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~ 390 (673)
++.++||.++|.++|+|||++.|.+....+++.+.++.++++++++++|++|||||++|||+++|+||++||+
T Consensus 233 ~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~ 312 (487)
T TIGR02398 233 GEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLE 312 (487)
T ss_pred cccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHH
Confidence 3778899999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCc
Q 005855 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRD 470 (673)
Q Consensus 391 ~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~E 470 (673)
+||+++++++|||||.|+|+++++|++++++++++|++||++||+.+|.||+|+++.++.+++.+||++||||++||++|
T Consensus 313 ~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrD 392 (487)
T TIGR02398 313 RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRD 392 (487)
T ss_pred hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHH
Q 005855 471 GMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQE 550 (673)
Q Consensus 471 Gf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~ 550 (673)
|||||++||||||.+++||||+|||+|+++++ .+|++|||||++++|+||.+||+||.+||++|+++++++|.+||+.+
T Consensus 393 GmNLVa~Eyva~~~~~~GvLILSefaGaa~~l-~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~ 471 (487)
T TIGR02398 393 GLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL-KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQR 471 (487)
T ss_pred ccCcchhhHHhhhcCCCCCEEEeccccchhhc-CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 99999999999998889999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005855 551 WAETFVSELND 561 (673)
Q Consensus 551 W~~~fl~~L~~ 561 (673)
|+++||++|..
T Consensus 472 W~~~fl~~l~~ 482 (487)
T TIGR02398 472 WADEFLAAVSP 482 (487)
T ss_pred HHHHHHHHhhh
Confidence 99999999874
No 7
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=100.00 E-value=3.2e-116 Score=975.23 Aligned_cols=462 Identities=54% Similarity=0.930 Sum_probs=355.8
Q ss_pred cEEEEEcCCCcceEecC-CCc--EEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCch--hhHHHHHhhcCceEEEEe
Q 005855 95 RLLVVANRLPVSAIRRG-EDS--WSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEI--GQKALTKALAEKRCIPVF 168 (673)
Q Consensus 95 rlivvsnrlP~~~~~~~-~g~--~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~--~~~~~~~~~~~~~~~pV~ 168 (673)
|+||||||||+.+++++ +|. |+++.++|||+++|.++ +..+++||||+|...+.++ ++........+++|+|||
T Consensus 2 ~livVsnrlPv~~~r~~~~G~~~~~~~~~~ggL~~al~~l~~~~~~~WvGw~g~~~~~~~~~~~~v~~~~~~~~~~~pV~ 81 (474)
T PF00982_consen 2 RLIVVSNRLPVSVKRDPDDGSWGWSWKPSAGGLVSALDPLLKKRGGIWVGWPGVDVDEEEDEQDRVEPRLLDEYNCVPVF 81 (474)
T ss_dssp -------------------------GGGGS-HHHHHHHHHHHHH-EEEEEEEEEES-TTS---EEEE---ETTEEEEEEE
T ss_pred CcccccccccccccccccccccccccccCCCcHHHHHHHHHhcCCCEEEEeCCCcCccccccccchhhhcccCceEEEEE
Confidence 79999999999999876 676 88889999999999999 7789999999998776554 222334567899999999
Q ss_pred cChHHHHHHHHHHHHHhhHhhhcCCCC-CccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHH
Q 005855 169 LDEDIVHQYYNGYCNNILWPLFHYLGL-PQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLP 246 (673)
Q Consensus 169 l~~~~~~~~Y~gf~n~~LWPlfH~~~~-~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp 246 (673)
|+++++++||+||||++|||+|||... .+ ....|+ +.|++|++||++||++|++.+++||+||||||||+++|
T Consensus 82 l~~~~~~~~Y~gf~n~~LWPlfHy~~~~~~-----~~~~~~~~~w~~Y~~vN~~FA~~i~~~~~~~D~VWVhDYhL~llP 156 (474)
T PF00982_consen 82 LSPEEYDGYYNGFCNQVLWPLFHYRLDSRP-----DLARFEEEWWEAYKRVNRRFADAIAEVYRPGDLVWVHDYHLMLLP 156 (474)
T ss_dssp E-HHHHHHHTTTHHHHTHHHHHTT-GG---------G----HHHHHHHHHHHHHHHHHHGGG--TT-EEEEESGGGTTHH
T ss_pred cCHHHHHHHHHhhhhhccCccccccccccc-----ccchhhHHHHHHHHHHHHHHHHHHHHhCcCCCEEEEeCCcHHHHH
Confidence 999999999999999999999998742 11 112466 55999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCC--ceeeCCe
Q 005855 247 KCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPE--GVEDQGR 324 (673)
Q Consensus 247 ~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~--~i~~~gr 324 (673)
++||++.|+++||||||||||++|+||+||++++||+|||+||+|||||++|++||++||++++|+++... ++.++||
T Consensus 157 ~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr 236 (474)
T PF00982_consen 157 QMLRERGPDARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGR 236 (474)
T ss_dssp HHHHHTT--SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTE
T ss_pred HHHHhhcCCceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654 7999999
Q ss_pred eeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcC-CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEE
Q 005855 325 LTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAG-RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQ 403 (673)
Q Consensus 325 ~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~-~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvq 403 (673)
.++|.++|+|||++.|.+.+.++++.++.+++++++++ +++|++|||+|++|||+++|+||++||++||+++++|+|+|
T Consensus 237 ~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQ 316 (474)
T PF00982_consen 237 RVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQ 316 (474)
T ss_dssp EEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEE
T ss_pred EEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEE
Confidence 99999999999999999999999999999999999988 59999999999999999999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhc
Q 005855 404 IAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQ 483 (673)
Q Consensus 404 vg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~ 483 (673)
|+.|+|+++++|++++++++++|++||++||+.+|+||+|+.+.++.+++.+||++|||+++||++||||||++||+|||
T Consensus 317 i~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q 396 (474)
T PF00982_consen 317 IAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQ 396 (474)
T ss_dssp E--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS
T ss_pred EeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 484 DLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 484 ~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
.+++|+||+|||+|++++|++++++|||||++++|+||.+||+||++||+.|+++++++|.+||+.+|+++||++|++
T Consensus 397 ~~~~GvLiLSefaGaa~~L~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~~ 474 (474)
T PF00982_consen 397 DDNPGVLILSEFAGAAEQLSEAALLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRDLKR 474 (474)
T ss_dssp -TS--EEEEETTBGGGGT-TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHT
T ss_pred cCCCCceEeeccCCHHHHcCCccEEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhhC
Confidence 989999999999999999955779999999999999999999999999999999999999999999999999999973
No 8
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-111 Score=918.63 Aligned_cols=462 Identities=50% Similarity=0.855 Sum_probs=430.1
Q ss_pred CCCCCcEEEEEcCCCcceEec-CCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCchhhHHHHHhhcCceEEEE
Q 005855 90 TFSRQRLLVVANRLPVSAIRR-GEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPV 167 (673)
Q Consensus 90 ~~~~~rlivvsnrlP~~~~~~-~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~~~~~~~~~~~~~~~~pV 167 (673)
....+|+|+||||+|++..+. +++....+.++|||+++|.++ +..+++|+||+|...+.++..........++...||
T Consensus 11 ~~~~~r~ivvsnR~p~~~~~~~~~~~~~~~~s~ggL~~~l~~~~~~~~~~W~gw~G~~~~~~~~~~~~~~~~~~~~~~~v 90 (486)
T COG0380 11 PLEDSRLIVVSNRLPVKKTPEGDKGIEFGKRSAGGLVTALKPLLRVDGGTWIGWSGTTGPTDESSDDLKERIGEFTSAPV 90 (486)
T ss_pred cccCCcEEEEEccCCCcccccCCCcceeeccCCcchhhhcchhhHhhcceEEecCceeccccccchhhhhccccceEEEE
Confidence 344789999999999998643 466888899999999999999 778999999999887633333445555668999999
Q ss_pred ecChHHHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHH
Q 005855 168 FLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLP 246 (673)
Q Consensus 168 ~l~~~~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp 246 (673)
.++.+++++||++|||++|||+|||+.... .|+ .+|+.|++||++||++|++.+++||+||||||||+++|
T Consensus 91 ~l~~~~~~~~Y~~fsn~iLWP~~Hy~~~~~--------~~~~~~w~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~P 162 (486)
T COG0380 91 ILSDEDYEGYYNGFSNAILWPLFHYFIDDV--------AYERNWWDAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLVP 162 (486)
T ss_pred ecCHHHHHHHHHHhhHhhhcceeeeecCcc--------ccchHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhhH
Confidence 999999999999999999999999995432 366 45999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCcee---eCC
Q 005855 247 KCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVE---DQG 323 (673)
Q Consensus 247 ~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~---~~g 323 (673)
+|||++.|+++||||+|+|||++|+|+|||+|++|++||++||+|||||++|++||+.+|+++++.. ....++ ++|
T Consensus 163 ~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~-~~~~~~~~~~~~ 241 (486)
T COG0380 163 QMLRERIPDAKIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLCSRLLGVT-GDADIRFNGADG 241 (486)
T ss_pred HHHHHhCCCceEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHHHHhcccc-ccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 222333 447
Q ss_pred eeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcC-CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEE
Q 005855 324 RLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAG-RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLL 402 (673)
Q Consensus 324 r~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~-~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lv 402 (673)
+.+++.++|+|||+..|.....++.++.++.++++.+.+ +++|++|||||+.||++++++||++||++||++++||+|+
T Consensus 242 ~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvli 321 (486)
T COG0380 242 RIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLL 321 (486)
T ss_pred ceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEE
Confidence 999999999999999999999888888888899988876 9999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhh
Q 005855 403 QIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVAC 482 (673)
Q Consensus 403 qvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~ 482 (673)
||+.|+|++.++|+.++.+++++|++||++||+.+|+||+|++..++++++.+||+.|||+++||++||||||++||+||
T Consensus 322 Qi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~ 401 (486)
T COG0380 322 QIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAA 401 (486)
T ss_pred EecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 483 QDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 483 ~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
|.+++|+||+|||+|++.+| .+|++|||||.+++|++|.+||+|+.+||++|++.+++.|.+||+++|+.+|+++|..
T Consensus 402 q~~~~G~LiLSeFaGaa~~L-~~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 402 QRDKPGVLILSEFAGAASEL-RDALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred hcCCCCcEEEeccccchhhh-ccCEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99889999999999999999 7899999999999999999999999999999999999999999999999999999986
No 9
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=100.00 E-value=1.8e-107 Score=906.84 Aligned_cols=452 Identities=56% Similarity=0.926 Sum_probs=421.6
Q ss_pred cEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCchhhHHH-HHhhcCceEEEEecChH
Q 005855 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEIGQKAL-TKALAEKRCIPVFLDED 172 (673)
Q Consensus 95 rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~~~~~~-~~~~~~~~~~pV~l~~~ 172 (673)
||||||||+|+.++++ + ++.++|||++||.++ +..+++||||+|...++++++..+ .....+++|+||||+++
T Consensus 1 ~livvsnr~p~~~~~~--~---~~~~~gGl~~al~~~~~~~~~~Wvgw~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 75 (456)
T TIGR02400 1 RLIVVSNRLPVPITRG--G---LEPSAGGLAVALLGALKATGGVWFGWSGKTVEEDEGEPFLRTELEGKITLAPVFLSEE 75 (456)
T ss_pred CEEEEECCCCccccCC--C---CCcCCCCHHHHHHHHHhccCcEEEEeCCCCCCccchhhhHHHhhccCceEEEEECCHH
Confidence 6999999999988654 2 567899999999998 778999999999866543322222 34567899999999999
Q ss_pred HHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHh
Q 005855 173 IVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKE 251 (673)
Q Consensus 173 ~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~ 251 (673)
++++||+||||++|||+|||++... .|+ ++|++|++||++||++|.+.++++|+||||||||+++|++||+
T Consensus 76 ~~~~~y~gf~n~~lWPl~H~~~~~~--------~~~~~~w~~Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~p~~lr~ 147 (456)
T TIGR02400 76 DVDGYYNGFSNSTLWPLFHYRPDLI--------RYDRKAWEAYRRVNRLFAEALAPLLQPGDIVWVHDYHLMLLPAMLRE 147 (456)
T ss_pred HHHHHHHHhhhhhcchhhccccccc--------ccCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEecchhhHHHHHHHh
Confidence 9999999999999999999996433 466 5699999999999999999999999999999999999999999
Q ss_pred hCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEe
Q 005855 252 YNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAF 331 (673)
Q Consensus 252 ~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~vi 331 (673)
+.|+++||||+|||||++|+|++||+|++|++|||+||+|||||++|++||+++|.+++|++....++.+.|+.++|.++
T Consensus 148 ~~~~~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~vi 227 (456)
T TIGR02400 148 LGVQNKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAF 227 (456)
T ss_pred hCCCCeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred ecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCC
Q 005855 332 PIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTD 411 (673)
Q Consensus 332 P~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~ 411 (673)
|+|||++.|.+....+++.+..+.++++++++++|++|||+++.||++.+|+||++|++++|+++++++|+|+|+|++++
T Consensus 228 P~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~ 307 (456)
T TIGR02400 228 PIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGD 307 (456)
T ss_pred cCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccC
Confidence 99999999998877777777778889888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEE
Q 005855 412 VPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLI 491 (673)
Q Consensus 412 ~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lV 491 (673)
+++|+++++++++++++||++||+.+|.|++++.+.++.+++.++|++|||||+||++||||||++||||||...+|++|
T Consensus 308 ~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vV 387 (456)
T TIGR02400 308 VPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLI 387 (456)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999866668899
Q ss_pred EeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHH
Q 005855 492 LSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELN 560 (673)
Q Consensus 492 lSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~ 560 (673)
+|+++|+++++ .+|++|||+|++++|+||.++|+|+.+||++|+++++++|.+||+.+|+++|+.+|.
T Consensus 388 lS~~~G~~~~l-~~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 388 LSEFAGAAQEL-NGALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDLN 455 (456)
T ss_pred EeCCCCChHHh-CCcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 99999999999 599999999999999999999999999999999999999999999999999999885
No 10
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=100.00 E-value=4.5e-98 Score=835.43 Aligned_cols=456 Identities=54% Similarity=0.915 Sum_probs=424.9
Q ss_pred cEEEEEcCCCcceEecCCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCchhhHHHHHhhcCceEEEEecChHH
Q 005855 95 RLLVVANRLPVSAIRRGEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEDI 173 (673)
Q Consensus 95 rlivvsnrlP~~~~~~~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~~~~~~~~~~~~~~~~pV~l~~~~ 173 (673)
||||||||+|+.++++++|.|+++.++|||+++|.++ +..+++||||+|...+.+++.........+++|+|||+++++
T Consensus 1 ~li~vsnr~p~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~~~wvg~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 80 (460)
T cd03788 1 RLVVVSNRLPVSIERDGDGEFEARRSAGGLATALKGLLKRTGGLWVGWSGIEEDEEEEDEVSTELLGEYTVAPVFLSPEE 80 (460)
T ss_pred CEEEEECCCCceeEEcCCCceEeccCCCcHHHHHHHHHhcCCeEEEEeCCCCCCcccchhhhhhhcCCceEEEeeCCHHH
Confidence 6999999999999998889999999999999999998 777999999999877665444456667789999999999999
Q ss_pred HHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhh
Q 005855 174 VHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEY 252 (673)
Q Consensus 174 ~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~ 252 (673)
++.||+||||++|||+|||++... .|+ ++|++|++||+.||++|.+.++++|+||||||||+++|.+||++
T Consensus 81 ~~~~y~~f~~~~LWp~~H~~~~~~--------~~~~~~w~~Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp~~lr~~ 152 (460)
T cd03788 81 FEGYYNGFSNEVLWPLFHYRLDLA--------RFDREDWEAYVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLPQMLRER 152 (460)
T ss_pred HHHHHHHhhhhhcchhhcCCCCcc--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHHHHHHhh
Confidence 999999999999999999985432 366 56999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCC-CceeeCCeeeEEEEe
Q 005855 253 NSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTP-EGVEDQGRLTRVAAF 331 (673)
Q Consensus 253 ~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~-~~i~~~gr~~~v~vi 331 (673)
.++++||||+|||||++++|+++|++++|+++|++||+||||+++|+++|+++|+++++++... ..++++|+.+++.++
T Consensus 153 ~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vi 232 (460)
T cd03788 153 GPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAF 232 (460)
T ss_pred CCCCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987654 678899999999999
Q ss_pred ecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCC
Q 005855 332 PIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTD 411 (673)
Q Consensus 332 P~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~ 411 (673)
|+|||++.|.+...++++.+..++++..++++++|++|||+++.||+..+|+||++|++++|+++++++|+|+|.|++++
T Consensus 233 p~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~ 312 (460)
T cd03788 233 PIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTD 312 (460)
T ss_pred eCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcC
Confidence 99999999998766666655556666667789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEE
Q 005855 412 VPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLI 491 (673)
Q Consensus 412 ~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lV 491 (673)
+++++++++++++++++||.+||+.+|.||+++.+.++.+++.++|++|||||+||.+||||+|++||||||..++|++|
T Consensus 313 ~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV 392 (460)
T cd03788 313 VPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLI 392 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999876778899
Q ss_pred EeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHH
Q 005855 492 LSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSEL 559 (673)
Q Consensus 492 lSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L 559 (673)
+|+++|+++++ .+|++|||+|++++|++|.++|+|+++|++.+++++++++.+||+..|+++|+++|
T Consensus 393 ~S~~~G~~~~~-~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 393 LSEFAGAAEEL-SGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred Eeccccchhhc-CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 99999999985 89999999999999999999999999999999999999999999999999999887
No 11
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-94 Score=823.57 Aligned_cols=554 Identities=46% Similarity=0.773 Sum_probs=515.7
Q ss_pred CCcEEEEEcCCCcceE-ecCCCcEEEEecCCcHHHhhccc-ccCCcEEEEeCCCCCCCchhhHHHHHhhcCceEEEEecC
Q 005855 93 RQRLLVVANRLPVSAI-RRGEDSWSLEISAGGLVSALLGV-KEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLD 170 (673)
Q Consensus 93 ~~rlivvsnrlP~~~~-~~~~g~~~~~~~~ggL~~~l~~~-~~~~~~WvGw~g~~~~~~~~~~~~~~~~~~~~~~pV~l~ 170 (673)
+.|+|+|||+||+.+. +.+++.|.+++++|||++++.+. +..+..||||.|..++++++.......+...+|+||+++
T Consensus 2 ~~r~i~vsn~lp~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 81 (732)
T KOG1050|consen 2 RPRIIVVSNRLPLKASKRTDTGKWSFSFSPGSLVSQLKGIFREMEVKWVGPLGDELDDSEKEDVSQELLEEFDSVPVFLD 81 (732)
T ss_pred CceEEEEEccCceecccccCCCceeeecCCCCchhhhhcccccceeeEEeeccccCchhhHhHhhhhhhhhcCceeeecC
Confidence 5789999999999984 44588999999999999999987 777899999999888887777778888899999999999
Q ss_pred hHHHHHHHHHHHHHhhHhhhcCCCCCccccccccchhH-HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHH
Q 005855 171 EDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCL 249 (673)
Q Consensus 171 ~~~~~~~Y~gf~n~~LWPlfH~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~L 249 (673)
++...++|++|||++|||+|||........ .. .|+ +.|++|+++|++||+++++.++++|+||+||||||++|.++
T Consensus 82 ~~~~~~~y~~~~~~ilwP~~hy~~~p~~~~--~~-~~~~~~w~~y~~~n~~f~d~ive~~~~~d~vwihdyhlmllp~~l 158 (732)
T KOG1050|consen 82 DELFDSYYNGYCKSILWPLFHYMLIPSEPA--FK-LFDLELWKAYVKVNQAFADKIVEVYEEGDIVWIHDYHLMLLPQML 158 (732)
T ss_pred CchhhhhhhhhhhhcccceeecccCCCchh--hh-hhHHHHHHHHHHHhHHHHHHHHHhccCCCcEEEEcchhhccchhh
Confidence 999999999999999999999993322111 11 344 56999999999999999999999999999999999999999
Q ss_pred HhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccC----CCceeeCCee
Q 005855 250 KEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGT----PEGVEDQGRL 325 (673)
Q Consensus 250 r~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~----~~~i~~~gr~ 325 (673)
|++..+++||||+|.|||++|+|+++|.+++|+.+|+++|+||||+++|++||+++|.|+++++.. ..++.+.||.
T Consensus 159 r~~~~~~~ig~flhspfpssEi~r~lp~r~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~ 238 (732)
T KOG1050|consen 159 RERFNSAKIGFFLHSPFPSSEIYRCLPVRKEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRD 238 (732)
T ss_pred hcccccceEEEeccCCCChHHHHHhcccHHHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccce
Confidence 999999999999999999999999999999999999999999999999999999999999999876 4568899999
Q ss_pred eEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEE
Q 005855 326 TRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIA 405 (673)
Q Consensus 326 ~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg 405 (673)
+.|.++|+|||+.+|......+.+..+..+++..++++++|++|||+|+.||+.+++.||++++++||+++++|+|+||+
T Consensus 239 ~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~ 318 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIE 318 (732)
T ss_pred eeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEe
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccC
Q 005855 406 VPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDL 485 (673)
Q Consensus 406 ~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~ 485 (673)
.|+++++.+|++++.++..++.+||++||+..+.||+++...++..++.++|.+||++++++++|||||+++||.+|+.+
T Consensus 319 ~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~ 398 (732)
T KOG1050|consen 319 NPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQEN 398 (732)
T ss_pred cCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHH
Q 005855 486 KKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVVE 565 (673)
Q Consensus 486 ~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~ 565 (673)
+.+++|+|+|.|+.+.++.+++++||||.+++|.+|..+|+|+.+|+..|+...+.++..|+...|+.+|++.|++.++.
T Consensus 399 ~~~~lVlsef~G~~~tl~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~~~~~~W~~~~~~~l~~~~~~ 478 (732)
T KOG1050|consen 399 KKSVLVLSEFIGDDTTLEDAAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVSTHDVVYWAKSFLQGLKRIWKV 478 (732)
T ss_pred cCCceEEeeeccccccccccCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcchhHHHHHHHHHHhhhhhhhh
Confidence 88999999999999999889999999999999999999999999999999999999999999999999999999888877
Q ss_pred hhhccccCCCCcchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEE
Q 005855 566 AQLRIKQVPPSLREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVL 645 (673)
Q Consensus 566 ~~~~~~~~~~~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~Vi 645 (673)
.. ...++++.|..+.++..|+++++|+|+||||||+++.. | ..+...|+.||+||+|+|||+
T Consensus 479 ~~-~~~~~~~~l~~~~~i~~y~~s~~rli~ldyd~t~~~~~--~---------------~~~~~~l~~L~~dp~n~v~i~ 540 (732)
T KOG1050|consen 479 GF-LGFRVTPLLTAEHIVSDYKKSKKRLILLDYDLTLIPPR--S---------------IKAISILKDLCSDPKNIVYIV 540 (732)
T ss_pred cc-cccccccccChhHhhhhhhhccceEEEecccccccCCC--C---------------chHHHHHHHHhcCCCCeEEEE
Confidence 65 33445566899999999999999999999998877642 2 129999999999999999999
Q ss_pred cCCCHHhHHHHhcccccceeec
Q 005855 646 SGSDRNVLDKVLDLVLFIFFSG 667 (673)
Q Consensus 646 SGR~~~~L~~~~~~~~~~~~~~ 667 (673)
|||++.+|++|+..++++.++|
T Consensus 541 s~~~r~~l~~~~~~~~~lgl~a 562 (732)
T KOG1050|consen 541 SGRGRSVLEKWFFGCKNLGLAA 562 (732)
T ss_pred EccCchhhhhhccccccceeec
Confidence 9999999999999999999886
No 12
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.97 E-value=1.2e-27 Score=282.14 Aligned_cols=311 Identities=14% Similarity=0.140 Sum_probs=216.5
Q ss_pred CCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhc-----------------CCcchHH-HHhhhcCCEEEE
Q 005855 232 GDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRT-----------------LPSRSDL-LRAVLAADLVGF 293 (673)
Q Consensus 232 ~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~-----------------lp~r~~i-l~~ll~aDlIgF 293 (673)
.|+||.|+++--.++..|++.. ++|.+++.|.- ..+-++. ++.|-+. -..+..||.|.-
T Consensus 311 pDvIHaHyw~sG~aa~~L~~~l-gVP~V~T~HSL--gr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIa 387 (1050)
T TIGR02468 311 PYVIHGHYADAGDSAALLSGAL-NVPMVLTGHSL--GRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVIT 387 (1050)
T ss_pred CCEEEECcchHHHHHHHHHHhh-CCCEEEECccc--hhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEE
Confidence 6999999999888888888765 57888888863 1121110 1112111 234678999999
Q ss_pred eCHHHHHHHHHHH-------HHHhccccCCCceeeCCe-eeEEEEeecCcChhhhhhhhcCChh-------------HHH
Q 005855 294 HTYDYARHFVSAC-------TRILGFEGTPEGVEDQGR-LTRVAAFPIGIDSERFIRALEINPV-------------QVH 352 (673)
Q Consensus 294 ~t~~~~~~Fl~~~-------~r~l~~~~~~~~i~~~gr-~~~v~viP~GID~~~f~~~~~~~~~-------------~~~ 352 (673)
.|..........- .+.|.. ....++..+|+ ..++.|||+|||++.|.+.....+. ...
T Consensus 388 sT~qE~~eq~~lY~~~~~~~~~~~~~-~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~ 466 (1050)
T TIGR02468 388 STRQEIEEQWGLYDGFDVILERKLRA-RARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPI 466 (1050)
T ss_pred eCHHHHHHHHHHhccCCchhhhhhhh-hhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchh
Confidence 9987766433210 011100 00123333332 2389999999999999874321110 001
Q ss_pred HHHHHHHh--cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHH----HHHHHHHHHHH
Q 005855 353 IKELQETF--AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEY----QRLTSQVHEIV 426 (673)
Q Consensus 353 ~~~lr~~~--~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey----~~l~~~l~~lv 426 (673)
...+++.+ +++++|++|||+++.||+..+|+||..+.+..+. .++++ ++|... +..+. .....++.+++
T Consensus 467 ~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~--~nL~L-IiG~gd--d~d~l~~~~~~~l~~L~~li 541 (1050)
T TIGR02468 467 WSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLREL--ANLTL-IMGNRD--DIDEMSSGSSSVLTSVLKLI 541 (1050)
T ss_pred hHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccC--CCEEE-EEecCc--hhhhhhccchHHHHHHHHHH
Confidence 11233333 5788999999999999999999999998654321 13443 455321 11111 12234555665
Q ss_pred HhhccccCCCCcccEEEeCCCCCHHHHHHHHHHc----CEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc
Q 005855 427 GRINGRFGTLTAVPIHHLDRSLDFPALCALYAVT----DVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL 502 (673)
Q Consensus 427 ~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~A----Dv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l 502 (673)
.+.+- .+ .|. |.|.++.++++++|+.| ||||+||++||||++++|||||| .|+|+|+.+|..+.+
T Consensus 542 ~~lgL----~g--~V~-FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcG----lPVVASdvGG~~EII 610 (1050)
T TIGR02468 542 DKYDL----YG--QVA-YPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHG----LPMVATKNGGPVDIH 610 (1050)
T ss_pred HHhCC----CC--eEE-ecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhC----CCEEEeCCCCcHHHh
Confidence 55432 12 244 57899999999999988 69999999999999999999995 999999999999888
Q ss_pred --cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhH
Q 005855 503 --GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563 (673)
Q Consensus 503 --g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~ 563 (673)
|.+|++|+|.|++++|++|.++|+.+ +.++++.+++++.+.+|++...+++|++.+..+.
T Consensus 611 ~~g~nGlLVdP~D~eaLA~AL~~LL~Dp-elr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 611 RVLDNGLLVDPHDQQAIADALLKLVADK-QLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred ccCCcEEEECCCCHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999854 4667777888899999999999999998887764
No 13
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.96 E-value=5.8e-27 Score=254.62 Aligned_cols=300 Identities=23% Similarity=0.209 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCC
Q 005855 210 QFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAAD 289 (673)
Q Consensus 210 ~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aD 289 (673)
.+..|...+..++.++... ...|+||+|+++.+.++...+. .+.++.+++|+++.... +. ....+...+..+|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~Dvv~~h~~~~~~~~~~~~~--~~~~~i~~~H~~~~~~~--~~--~~~~~~~~~~~~d 137 (372)
T cd03792 65 EKEIYLEWNEENAERPLLD-LDADVVVIHDPQPLALPLFKKK--RGRPWIWRCHIDLSSPN--RR--VWDFLQPYIEDYD 137 (372)
T ss_pred HHHHHHHHHHHHhcccccc-CCCCEEEECCCCchhHHHhhhc--CCCeEEEEeeeecCCCc--HH--HHHHHHHHHHhCC
Confidence 4667777777776653222 2569999999998777666543 36788899999875321 10 1122334455688
Q ss_pred EEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceE
Q 005855 290 LVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVM 366 (673)
Q Consensus 290 lIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iI 366 (673)
.+.+.+.+++..+ +. ..++ ++|+|||+........+ ......+++++ .++++|
T Consensus 138 ~~i~~~~~~~~~~------------------~~--~~~~-vipngvd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i 193 (372)
T cd03792 138 AAVFHLPEYVPPQ------------------VP--PRKV-IIPPSIDPLSGKNRELS---PADIEYILEKYGIDPERPYI 193 (372)
T ss_pred EEeecHHHhcCCC------------------CC--CceE-EeCCCCCCCccccCCCC---HHHHHHHHHHhCCCCCCcEE
Confidence 8777663322111 01 1234 89999997532211111 12233445555 378899
Q ss_pred EEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCC
Q 005855 367 LGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDR 446 (673)
Q Consensus 367 l~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~ 446 (673)
++|||+++.||+..+++|++.+.+++|++ .|+++|.+...+ +++.++.+++.+ ..+. . ..|.++..
T Consensus 194 ~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~----~l~i~G~g~~~~-~~~~~~~~~~~~---~~~~----~--~~v~~~~~ 259 (372)
T cd03792 194 TQVSRFDPWKDPFGVIDAYRKVKERVPDP----QLVLVGSGATDD-PEGWIVYEEVLE---YAEG----D--PDIHVLTL 259 (372)
T ss_pred EEEeccccccCcHHHHHHHHHHHhhCCCC----EEEEEeCCCCCC-chhHHHHHHHHH---HhCC----C--CCeEEEec
Confidence 99999999999999999999998877764 588888654221 233333333322 2111 1 13565543
Q ss_pred C-CCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHH
Q 005855 447 S-LDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIAR 523 (673)
Q Consensus 447 ~-v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~ 523 (673)
. ++.+++.++|++||+|++||.+||||++++|||||| .|+|+|+.+|..+.+ |.+|+++++ .+++|++|.+
T Consensus 260 ~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G----~Pvv~s~~~~~~~~i~~~~~g~~~~~--~~~~a~~i~~ 333 (372)
T cd03792 260 PPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKG----KPVIAGPVGGIPLQIEDGETGFLVDT--VEEAAVRILY 333 (372)
T ss_pred CCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC----CCEEEcCCCCchhhcccCCceEEeCC--cHHHHHHHHH
Confidence 3 489999999999999999999999999999999995 899999999999888 578999874 6788999999
Q ss_pred HhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHHH
Q 005855 524 ALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELND 561 (673)
Q Consensus 524 aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~~ 561 (673)
++++ ++++.++.+++++++ ++|+++..++++++.+++
T Consensus 334 ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 334 LLRD-PELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred HHcC-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9986 457778888888887 579999999999887764
No 14
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.95 E-value=3.8e-26 Score=256.49 Aligned_cols=310 Identities=22% Similarity=0.258 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhC----CCCeEEeEeccCCC----chhhhhcC--Cc---------
Q 005855 217 ANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYN----SDMKVGWFLHTPFP----SSEIHRTL--PS--------- 277 (673)
Q Consensus 217 vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~----~~~~Ig~flH~PfP----~~e~fr~l--p~--------- 277 (673)
.++...+.+...-...|+||+||||..++|.++++.. .+.++.++.|..-. +.+.+..+ |+
T Consensus 104 f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
T PRK00654 104 FSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLE 183 (466)
T ss_pred HHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhh
Confidence 3333334333322367999999999999999998653 46899999998621 11111111 10
Q ss_pred ----chHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCcee--eCCeeeEEEEeecCcChhhhhhhhcCC----
Q 005855 278 ----RSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVE--DQGRLTRVAAFPIGIDSERFIRALEIN---- 347 (673)
Q Consensus 278 ----r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~--~~gr~~~v~viP~GID~~~f~~~~~~~---- 347 (673)
..-+..++..||.|...++.+++..... ..| .++. +..+..++.+||||||++.|.+.....
T Consensus 184 ~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~---~~~-----~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~ 255 (466)
T PRK00654 184 FYGQISFLKAGLYYADRVTTVSPTYAREITTP---EFG-----YGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAAN 255 (466)
T ss_pred cCCcccHHHHHHHhcCcCeeeCHHHHHHhccc---cCC-----cChHHHHHhcccCceEecCCCCccccCCccCcccccc
Confidence 1112335677888887777766543210 000 0000 112345799999999999987642100
Q ss_pred -------hhHHHHHHHHHHhc----CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHH
Q 005855 348 -------PVQVHIKELQETFA----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQ 416 (673)
Q Consensus 348 -------~~~~~~~~lr~~~~----~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~ 416 (673)
...+..+.++++++ +.++|++|||+++.||++.+++|+++++++ ++.|+++|.+. +
T Consensus 256 ~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~------~~~lvivG~g~----~--- 322 (466)
T PRK00654 256 YSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ------GGQLVLLGTGD----P--- 322 (466)
T ss_pred cChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc------CCEEEEEecCc----H---
Confidence 00112334566553 568999999999999999999999998753 35688887421 2
Q ss_pred HHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC
Q 005855 417 RLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA 496 (673)
Q Consensus 417 ~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a 496 (673)
.+++++++++.+.+. .+.++.+. +.+....+|+.||++|+||.+||||++.+|||+|| .|+|+|+.+
T Consensus 323 ~~~~~l~~l~~~~~~--------~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G----~p~V~~~~g 389 (466)
T PRK00654 323 ELEEAFRALAARYPG--------KVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYG----TLPIVRRTG 389 (466)
T ss_pred HHHHHHHHHHHHCCC--------cEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCC----CCEEEeCCC
Confidence 234566666655431 24444454 66667899999999999999999999999999995 899999999
Q ss_pred Cchhhc--c------CceEEECCCCHHHHHHHHHHHhcC--CHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHh
Q 005855 497 GAAQSL--G------AGAILVNPWNITEVANAIARALNM--SPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDT 562 (673)
Q Consensus 497 G~~~~l--g------~~gllVnP~D~~~lA~aI~~aL~m--~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~ 562 (673)
|..+.+ + .+|++|+|.|+++++++|.++++. .++.+.++..+++ ...++++.-++++++..+++
T Consensus 390 G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 390 GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAM--AQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHH
Confidence 999988 4 569999999999999999999863 2223444333332 25788888888887766554
No 15
>PLN02939 transferase, transferring glycosyl groups
Probab=99.95 E-value=1.2e-25 Score=261.70 Aligned_cols=321 Identities=16% Similarity=0.183 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhh-----CCCCeEEeEeccC-----CCchhhh-hcCCcc-
Q 005855 211 FAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEY-----NSDMKVGWFLHTP-----FPSSEIH-RTLPSR- 278 (673)
Q Consensus 211 w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~-----~~~~~Ig~flH~P-----fP~~e~f-r~lp~r- 278 (673)
...|.-+.++.++.+.+.-...||||+||||..++|.++++. +.++++.|++|.- ||...+. ..+|+.
T Consensus 590 ~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~ 669 (977)
T PLN02939 590 FKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQ 669 (977)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHH
Confidence 445555566666655544345699999999999986555432 3567899999975 2221111 112211
Q ss_pred ---------------hHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhh
Q 005855 279 ---------------SDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRA 343 (673)
Q Consensus 279 ---------------~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~ 343 (673)
..+..++..||.|..-++.|++.... ..-.|++. .+..+..++.+||||||++.|.|.
T Consensus 670 l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~t--e~G~GL~~-----~L~~~~~Kl~gIlNGID~e~wnPa 742 (977)
T PLN02939 670 LDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRS--EGGRGLQD-----TLKFHSKKFVGILNGIDTDTWNPS 742 (977)
T ss_pred ccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHH--HhccchHH-----HhccccCCceEEecceehhhcCCc
Confidence 11234677899999999999887553 11011110 022345688999999999999875
Q ss_pred hcC--------Chh---HHHHHHHHHHhc------CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEc
Q 005855 344 LEI--------NPV---QVHIKELQETFA------GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAV 406 (673)
Q Consensus 344 ~~~--------~~~---~~~~~~lr~~~~------~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~ 406 (673)
... .+. ......++++++ +.++|++|||+.+.||+..+++|+..+++ + ++.|+++|.
T Consensus 743 tD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~----dvqLVIvGd 816 (977)
T PLN02939 743 TDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--L----GGQFVLLGS 816 (977)
T ss_pred cccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--c----CCEEEEEeC
Confidence 310 000 011234666663 35899999999999999999999998874 2 356888874
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCC
Q 005855 407 PTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLK 486 (673)
Q Consensus 407 psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~ 486 (673)
+ ++ ..+++++++++.+.+. . ..|.| .+..+......+|+.||+||+||.+||||++++|||+||
T Consensus 817 G-----p~-~~~e~eL~~La~~l~l----~--drV~F-lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyG--- 880 (977)
T PLN02939 817 S-----PV-PHIQREFEGIADQFQS----N--NNIRL-ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYG--- 880 (977)
T ss_pred C-----Cc-HHHHHHHHHHHHHcCC----C--CeEEE-EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCC---
Confidence 2 21 1345566666665432 1 13554 567787778899999999999999999999999999994
Q ss_pred CceEEEeCCCCchhhc-----------cCceEEECCCCHHHHHHHHHHHhc---CCHHHHHHHHHHhhHHHhhCCHHHHH
Q 005855 487 KGVLILSEFAGAAQSL-----------GAGAILVNPWNITEVANAIARALN---MSPEEREKRHWHNFTHVTTHTAQEWA 552 (673)
Q Consensus 487 ~g~lVlSe~aG~~~~l-----------g~~gllVnP~D~~~lA~aI~~aL~---m~~~er~~r~~~~~~~v~~~~~~~W~ 552 (673)
.|+|++..+|..+.+ |.+|++|+|.|+++++++|.+++. ..++.+..+.++. ....+++...+
T Consensus 881 -tPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a--m~~dFSWe~~A 957 (977)
T PLN02939 881 -SVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKD--MNIDFSWDSSA 957 (977)
T ss_pred -CCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH--HHhcCCHHHHH
Confidence 799999999998766 247999999999999999999986 2344444444432 34678999999
Q ss_pred HHHHHHHHHhH
Q 005855 553 ETFVSELNDTV 563 (673)
Q Consensus 553 ~~fl~~L~~~~ 563 (673)
+.|++....+.
T Consensus 958 ~qYeeLY~~ll 968 (977)
T PLN02939 958 SQYEELYQRAV 968 (977)
T ss_pred HHHHHHHHHHH
Confidence 99887766654
No 16
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.95 E-value=7.4e-26 Score=252.24 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchh--hhh------------cCCcch-HH
Q 005855 217 ANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSE--IHR------------TLPSRS-DL 281 (673)
Q Consensus 217 vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e--~fr------------~lp~r~-~i 281 (673)
+...+...+.+.....|+||+|+++..++..++++.. +.++.++.|....... +.. .+..+- ..
T Consensus 100 ~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~-~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (439)
T TIGR02472 100 LADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLL-GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAE 178 (439)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHh-CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHH
Confidence 3333434443333346999999988777777776654 5788999997432110 000 000000 01
Q ss_pred HHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-
Q 005855 282 LRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF- 360 (673)
Q Consensus 282 l~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~- 360 (673)
...+..+|.|...+...+..-+ ....+ -...++.++|+|||++.|.+....+......+.+++..
T Consensus 179 ~~~~~~ad~ii~~s~~~~~~~~---~~~~~-----------~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~ 244 (439)
T TIGR02472 179 EETLAHASLVITSTHQEIEEQY---ALYDS-----------YQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLK 244 (439)
T ss_pred HHHHHhCCEEEECCHHHHHHHH---HhccC-----------CCccceEEECCCcChhhcCCCCccccchhHHHHHHhhcc
Confidence 1234567776665543322111 00001 12457899999999999976432221111111122211
Q ss_pred -cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHH----HHHHHHHHHHHhhccccCC
Q 005855 361 -AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQ----RLTSQVHEIVGRINGRFGT 435 (673)
Q Consensus 361 -~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~----~l~~~l~~lv~~IN~~~g~ 435 (673)
+++++|++|||+++.||+..+|+||..+.+..+. .+++ +++|.+. +.++++ ++.+++.+++.+++ .
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~--~~l~-li~G~g~--~~~~l~~~~~~~~~~~~~~~~~~~----l 315 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM--ANLV-LVLGCRD--DIRKMESQQREVLQKVLLLIDRYD----L 315 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh--ccEE-EEeCCcc--ccccccHHHHHHHHHHHHHHHHcC----C
Confidence 4678999999999999999999999865321111 1232 2344211 111111 22333444544432 2
Q ss_pred CCcccEEEeCCCCCHHHHHHHHHHc----CEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEE
Q 005855 436 LTAVPIHHLDRSLDFPALCALYAVT----DVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILV 509 (673)
Q Consensus 436 ~~~~pV~~~~~~v~~~el~aly~~A----Dv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllV 509 (673)
.+ .|. |.|.++.+++.++|+.| |+||+||.+||||++++|||||+ .|+|+|+.+|+.+.+ |.+|++|
T Consensus 316 ~~--~V~-f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G----~PvV~s~~gg~~eiv~~~~~G~lv 388 (439)
T TIGR02472 316 YG--KVA-YPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACG----LPIVATDDGGPRDIIANCRNGLLV 388 (439)
T ss_pred Cc--eEE-ecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhC----CCEEEeCCCCcHHHhcCCCcEEEe
Confidence 22 244 57889999999999988 99999999999999999999995 899999999999888 4689999
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHH
Q 005855 510 NPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSEL 559 (673)
Q Consensus 510 nP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L 559 (673)
+|.|++++|++|.++++++ +++.++.+++++++ ++|+++.-+++|++.|
T Consensus 389 ~~~d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DVLDLEAIASALEDALSDS-SQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999865 47777888888877 5688888888887654
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.95 E-value=2e-25 Score=244.22 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=203.4
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
...|+|++|+.. .+...++++.+.+++.+.+|..|.. +.+ ..++.|.+.+.. ...++. +.
T Consensus 98 ~~~~vi~v~~~~--~~~~~~~~~~~~~~~v~~~h~~~~~-~~~-------------~~~~~ii~~S~~-~~~~~~---~~ 157 (380)
T PRK15484 98 TKDSVIVIHNSM--KLYRQIRERAPQAKLVMHMHNAFEP-ELL-------------DKNAKIIVPSQF-LKKFYE---ER 157 (380)
T ss_pred CCCcEEEEeCcH--HhHHHHHhhCCCCCEEEEEecccCh-hHh-------------ccCCEEEEcCHH-HHHHHH---hh
Confidence 357999999843 3445577888999999999987532 111 235777776643 333322 11
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKLLAFE 386 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L~Af~ 386 (673)
+ ...++.++|+|||.+.|.+... ..+++.+ .++++|+++||+.+.||+..+++|+.
T Consensus 158 ~-------------~~~~i~vIpngvd~~~~~~~~~--------~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~ 216 (380)
T PRK15484 158 L-------------PNADISIVPNGFCLETYQSNPQ--------PNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFE 216 (380)
T ss_pred C-------------CCCCEEEecCCCCHHHcCCcch--------HHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHH
Confidence 1 1235789999999988864211 1223333 26789999999999999999999999
Q ss_pred HHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEc
Q 005855 387 KFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVT 466 (673)
Q Consensus 387 ~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~ 466 (673)
++.+++|++ .|+++|.+......+...+.+++++++.+++. .++ +.|.++.+++..+|+.||++|+|
T Consensus 217 ~l~~~~p~~----~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~--------~v~-~~G~~~~~~l~~~~~~aDv~v~p 283 (380)
T PRK15484 217 KLATAHSNL----KLVVVGDPTASSKGEKAAYQKKVLEAAKRIGD--------RCI-MLGGQPPEKMHNYYPLADLVVVP 283 (380)
T ss_pred HHHHhCCCe----EEEEEeCCccccccchhHHHHHHHHHHHhcCC--------cEE-EeCCCCHHHHHHHHHhCCEEEeC
Confidence 999888875 58888865432222334566677777665432 354 56889999999999999999999
Q ss_pred CCC-cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceE-EECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHH
Q 005855 467 SLR-DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAI-LVNPWNITEVANAIARALNMSPEEREKRHWHNFTH 542 (673)
Q Consensus 467 Sl~-EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gl-lVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~ 542 (673)
|.+ ||||++++|||||| .|+|+|..+|..+.+ |.+|+ +++|.|++++|++|.++++++. +.++.+++++.
T Consensus 284 S~~~E~f~~~~lEAma~G----~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~--~~~~~~~ar~~ 357 (380)
T PRK15484 284 SQVEEAFCMVAVEAMAAG----KPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPE--LTQIAEQAKDF 357 (380)
T ss_pred CCCccccccHHHHHHHcC----CCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHH--HHHHHHHHHHH
Confidence 975 99999999999995 899999999988877 56787 6789999999999999998764 45667777766
Q ss_pred H-hhCCHHHHHHHHHHHHHHh
Q 005855 543 V-TTHTAQEWAETFVSELNDT 562 (673)
Q Consensus 543 v-~~~~~~~W~~~fl~~L~~~ 562 (673)
+ ++|++..-++++++.|+..
T Consensus 358 ~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 358 VFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHhCCHHHHHHHHHHHHHHh
Confidence 5 6789999999998888653
No 18
>PLN02316 synthase/transferase
Probab=99.95 E-value=1.9e-25 Score=264.27 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhh-----CCCCeEEeEeccCCCchhhhhcCCcchHHHHh
Q 005855 210 QFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEY-----NSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRA 284 (673)
Q Consensus 210 ~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~-----~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ 284 (673)
....|-.++++.++.+.+.-...||||+||+|..++|.++++. ..+.++.+++|..-. . ...+-.+
T Consensus 688 d~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiHnl~~-----~----~n~lk~~ 758 (1036)
T PLN02316 688 DGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIHNLEF-----G----ANHIGKA 758 (1036)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeCCccc-----c----hhHHHHH
Confidence 3455556666666666554345699999999999999999874 356899999996421 1 1224456
Q ss_pred hhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcC-------Ch-h----HHH
Q 005855 285 VLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEI-------NP-V----QVH 352 (673)
Q Consensus 285 ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~-------~~-~----~~~ 352 (673)
+..||.|.--++.|++..... + . ...+..++.+||||||++.|.+.... .+ . ...
T Consensus 759 l~~AD~ViTVS~tya~EI~~~-----~------~--l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~ 825 (1036)
T PLN02316 759 MAYADKATTVSPTYSREVSGN-----S------A--IAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAA 825 (1036)
T ss_pred HHHCCEEEeCCHHHHHHHHhc-----c------C--cccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhh
Confidence 788999999999887765420 0 0 01124578999999999988764210 00 0 111
Q ss_pred HHHHHHHhc----CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHh
Q 005855 353 IKELQETFA----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGR 428 (673)
Q Consensus 353 ~~~lr~~~~----~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~ 428 (673)
...++++++ +.++|++||||++.||+..+++|+.++++. ++.||++|.+ |+ ..++.++++++.+
T Consensus 826 k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~------~~qlVIvG~G-----pd-~~~e~~l~~La~~ 893 (1036)
T PLN02316 826 KEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER------NGQVVLLGSA-----PD-PRIQNDFVNLANQ 893 (1036)
T ss_pred HHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc------CcEEEEEeCC-----CC-HHHHHHHHHHHHH
Confidence 234666663 568999999999999999999999998853 2567777743 22 1345667777776
Q ss_pred hccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--c---
Q 005855 429 INGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--G--- 503 (673)
Q Consensus 429 IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g--- 503 (673)
++..+.. .|.+ .+..+......+|+.||+||+||.+|||||+.+|||+|| .|+|++..+|..+.+ +
T Consensus 894 Lg~~~~~----rV~f-~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~G----tppVvs~vGGL~DtV~d~d~~ 964 (1036)
T PLN02316 894 LHSSHHD----RARL-CLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYG----SIPVVRKTGGLFDTVFDVDHD 964 (1036)
T ss_pred hCccCCC----eEEE-EecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcC----CCeEEEcCCCcHhhccccccc
Confidence 5543321 2444 344454444589999999999999999999999999994 799999999999987 2
Q ss_pred ----------CceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHHHh
Q 005855 504 ----------AGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELNDT 562 (673)
Q Consensus 504 ----------~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~~~ 562 (673)
.+|++|+|.|+++++++|.++|....+.+..+.+..++.+ .++++..-+++|++..+.+
T Consensus 965 ~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 965 KERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred cccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 3799999999999999999999864333334344445554 5688888888888776654
No 19
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.95 E-value=8.9e-26 Score=253.80 Aligned_cols=312 Identities=21% Similarity=0.270 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhCC--CCeEEeEeccCCC----chhhhhcC--Ccc-------
Q 005855 214 YIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNS--DMKVGWFLHTPFP----SSEIHRTL--PSR------- 278 (673)
Q Consensus 214 Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~--~~~Ig~flH~PfP----~~e~fr~l--p~r------- 278 (673)
+...+++.++.+.+.-...|+||+||||..++|.+++.... +.++.++.|...+ +.+.+..+ |+.
T Consensus 111 ~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 190 (473)
T TIGR02095 111 FAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGL 190 (473)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhh
Confidence 33445555554444333569999999999999999988765 3899999998642 12222221 110
Q ss_pred ------hHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCcee--eCCeeeEEEEeecCcChhhhhhhhcCC---
Q 005855 279 ------SDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVE--DQGRLTRVAAFPIGIDSERFIRALEIN--- 347 (673)
Q Consensus 279 ------~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~--~~gr~~~v~viP~GID~~~f~~~~~~~--- 347 (673)
..+..++..||.|...++.+++..... ..+ .++. +..+..++.+||||||.+.|.+.....
T Consensus 191 ~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~---~~~-----~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~ 262 (473)
T TIGR02095 191 EFYGRVNFLKGGIVYADRVTTVSPTYAREILTP---EFG-----YGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKA 262 (473)
T ss_pred hcCCchHHHHHHHHhCCcCeecCHhHHHHhcCC---cCC-----ccchhHHHhcCCCeEEEeCCCCccccCCCCCccccc
Confidence 012335677888877777766554320 000 0010 011345789999999999987642100
Q ss_pred --------hhHHHHHHHHHHhc-----CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHH
Q 005855 348 --------PVQVHIKELQETFA-----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPE 414 (673)
Q Consensus 348 --------~~~~~~~~lr~~~~-----~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~e 414 (673)
.-......++++++ ++++|++|||+.+.||++.+++|++++.++ ++.|+++|.+. +
T Consensus 263 ~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~------~~~lvi~G~g~----~- 331 (473)
T TIGR02095 263 NYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL------GGQLVVLGTGD----P- 331 (473)
T ss_pred CcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc------CcEEEEECCCC----H-
Confidence 00112234565553 678999999999999999999999998754 25688887431 2
Q ss_pred HHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeC
Q 005855 415 YQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSE 494 (673)
Q Consensus 415 y~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe 494 (673)
.+++++++++.+.+. .+.++ +..+.+++..+|+.||++++||.+||||++.+|||+|+ .|+|+|.
T Consensus 332 --~~~~~l~~~~~~~~~--------~v~~~-~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G----~pvI~s~ 396 (473)
T TIGR02095 332 --ELEEALRELAERYPG--------NVRVI-IGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYG----TVPIVRR 396 (473)
T ss_pred --HHHHHHHHHHHHCCC--------cEEEE-EcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCC----CCeEEcc
Confidence 345566666644221 24443 45688889999999999999999999999999999995 8999999
Q ss_pred CCCchhhc--c------CceEEECCCCHHHHHHHHHHHhcC---CHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 495 FAGAAQSL--G------AGAILVNPWNITEVANAIARALNM---SPEEREKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 495 ~aG~~~~l--g------~~gllVnP~D~~~lA~aI~~aL~m---~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
.+|..+.+ + .+|++++|.|++++|++|.+++.+ .++.++++.+++. .++++++.-++++++..++
T Consensus 397 ~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 397 TGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAM--SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred CCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh--ccCCCcHHHHHHHHHHHHh
Confidence 99999988 4 679999999999999999999873 3334444444432 3578888888888776553
No 20
>PRK14098 glycogen synthase; Provisional
Probab=99.95 E-value=1.1e-25 Score=254.03 Aligned_cols=323 Identities=14% Similarity=0.182 Sum_probs=219.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhC------CCCeEEeEeccCCC----chhhhh-cC
Q 005855 207 FQSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYN------SDMKVGWFLHTPFP----SSEIHR-TL 275 (673)
Q Consensus 207 ~~~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~------~~~~Ig~flH~PfP----~~e~fr-~l 275 (673)
|.+....|.-.+++.++.+.+.--..|+||+||||..++|.++++.. .+++++++.|.... +.+.+. .+
T Consensus 117 ~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~ 196 (489)
T PRK14098 117 LKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLL 196 (489)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhC
Confidence 44456666666777777665432245999999999999999998753 47899999998521 111111 12
Q ss_pred Ccc------------hHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhh
Q 005855 276 PSR------------SDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRA 343 (673)
Q Consensus 276 p~r------------~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~ 343 (673)
|+. .-+-.++..||.|..-++.|++........-.|++ . .+..+..++.+||||||++.|.+.
T Consensus 197 ~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~----~-~l~~~~~kl~~I~NGID~~~~~p~ 271 (489)
T PRK14098 197 PEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLD----K-VLEERKMRLHGILNGIDTRQWNPS 271 (489)
T ss_pred CHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChH----H-HHHhcCCCeeEEeCCccccccCCc
Confidence 211 12334678889988888887765432000000110 0 011135688999999999999864
Q ss_pred hcCC--------hh---HHHHHHHHHHh-----cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcC
Q 005855 344 LEIN--------PV---QVHIKELQETF-----AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVP 407 (673)
Q Consensus 344 ~~~~--------~~---~~~~~~lr~~~-----~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~p 407 (673)
.... .. ......+++.+ +++++|++|||+++.||++.+++|+.++++. ++.|+++|.+
T Consensus 272 ~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~------~~~lvivG~G 345 (489)
T PRK14098 272 TDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVEL------DIQLVICGSG 345 (489)
T ss_pred ccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhc------CcEEEEEeCC
Confidence 3110 00 01122344444 2567999999999999999999999998752 3668888842
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCC
Q 005855 408 TRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKK 487 (673)
Q Consensus 408 sr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~ 487 (673)
+. .+++++++++.+... .|. +.+.++.+++..+|+.||+||+||.+||||++.+|||+|+
T Consensus 346 -----~~--~~~~~l~~l~~~~~~--------~V~-~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G---- 405 (489)
T PRK14098 346 -----DK--EYEKRFQDFAEEHPE--------QVS-VQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYG---- 405 (489)
T ss_pred -----CH--HHHHHHHHHHHHCCC--------CEE-EEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCC----
Confidence 21 234566666654321 255 3567899999999999999999999999999999999994
Q ss_pred ceEEEeCCCCchhhc------cCceEEECCCCHHHHHHHHHHHhcC--CHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHH
Q 005855 488 GVLILSEFAGAAQSL------GAGAILVNPWNITEVANAIARALNM--SPEEREKRHWHNFTHVTTHTAQEWAETFVSEL 559 (673)
Q Consensus 488 g~lVlSe~aG~~~~l------g~~gllVnP~D~~~lA~aI~~aL~m--~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L 559 (673)
.|+|++..+|..+.+ +.+|++|+|.|++++|++|.+++.+ .++....+.++. ..++++++.-++++++..
T Consensus 406 ~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~--~~~~fsw~~~a~~y~~lY 483 (489)
T PRK14098 406 TIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEA--MERDFSWKNSAEEYAQLY 483 (489)
T ss_pred CCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHH--hcCCCChHHHHHHHHHHH
Confidence 789999999998876 3579999999999999999998742 232333332222 235788888888887766
Q ss_pred HHh
Q 005855 560 NDT 562 (673)
Q Consensus 560 ~~~ 562 (673)
+++
T Consensus 484 ~~~ 486 (489)
T PRK14098 484 REL 486 (489)
T ss_pred HHH
Confidence 554
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.95 E-value=2.8e-25 Score=245.28 Aligned_cols=285 Identities=16% Similarity=0.116 Sum_probs=206.7
Q ss_pred HHHHHhcC--CCCEEEEeCccchhHHHHHHhh-CCCCeEEeEeccCCCc-hhhhhcCCcchHHHHhhhcCCEEEEeCHHH
Q 005855 223 DVVNKHYK--DGDVVWCHDYHLMFLPKCLKEY-NSDMKVGWFLHTPFPS-SEIHRTLPSRSDLLRAVLAADLVGFHTYDY 298 (673)
Q Consensus 223 ~~i~~~~~--~~DvVwvHDyhl~llp~~Lr~~-~~~~~Ig~flH~PfP~-~e~fr~lp~r~~il~~ll~aDlIgF~t~~~ 298 (673)
-.+.+..+ +.|+||+|..+.-.+..++++. ....++.+++|.+... ..+.. ..+..+-.-+..+|.|...+...
T Consensus 108 ~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~~~~--~~~~~~~~~~~~ad~vv~~S~~~ 185 (406)
T PRK15427 108 AICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREVLN--HYTPEYQQLFRRGDLMLPISDLW 185 (406)
T ss_pred HHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccccchhhh--hhhHHHHHHHHhCCEEEECCHHH
Confidence 33444443 4699999998877777777763 2234567788865221 11110 01112333456799988877654
Q ss_pred HHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCCh
Q 005855 299 ARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGI 378 (673)
Q Consensus 299 ~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi 378 (673)
...+.+ ++. ...++.++|+|||.+.|.+.... ...+...|++|||+.+.||+
T Consensus 186 ~~~l~~-----~g~-----------~~~ki~vi~nGvd~~~f~~~~~~------------~~~~~~~il~vGrl~~~Kg~ 237 (406)
T PRK15427 186 AGRLQK-----MGC-----------PPEKIAVSRMGVDMTRFSPRPVK------------APATPLEIISVARLTEKKGL 237 (406)
T ss_pred HHHHHH-----cCC-----------CHHHEEEcCCCCCHHHcCCCccc------------cCCCCeEEEEEeCcchhcCH
Confidence 443321 121 23578899999999988642110 11345679999999999999
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 458 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~ 458 (673)
..+++|++.+.+++|+ +.|+++|. ++.. +++++++.+.+- ...+.|.|.++.+++..+|+
T Consensus 238 ~~ll~a~~~l~~~~~~----~~l~ivG~-----G~~~----~~l~~~~~~~~l-------~~~V~~~G~~~~~el~~~l~ 297 (406)
T PRK15427 238 HVAIEACRQLKEQGVA----FRYRILGI-----GPWE----RRLRTLIEQYQL-------EDVVEMPGFKPSHEVKAMLD 297 (406)
T ss_pred HHHHHHHHHHHhhCCC----EEEEEEEC-----chhH----HHHHHHHHHcCC-------CCeEEEeCCCCHHHHHHHHH
Confidence 9999999999887775 45888873 3333 344445444321 13344689999999999999
Q ss_pred HcCEEEEcCCC------cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHH
Q 005855 459 VTDVALVTSLR------DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPE 530 (673)
Q Consensus 459 ~ADv~vv~Sl~------EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~ 530 (673)
.||+||+||.. ||||++++|||||| .|+|+|..+|..+.+ |.+|++|+|.|++++|++|.++++++++
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G----~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVG----IPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCC----CCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHH
Confidence 99999999984 99999999999995 899999999999888 6789999999999999999999996677
Q ss_pred HHHHHHHHhhHHH-hhCCHHHHHHHHHHHHHH
Q 005855 531 EREKRHWHNFTHV-TTHTAQEWAETFVSELND 561 (673)
Q Consensus 531 er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~~ 561 (673)
+++++.+++++++ .+|+++..++++.+.+++
T Consensus 374 ~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 374 ELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 8888888998887 568999888888776653
No 22
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.94 E-value=2e-24 Score=236.87 Aligned_cols=289 Identities=19% Similarity=0.198 Sum_probs=211.6
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhh---cCCc--chHHH--HhhhcCCEEEEeCHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR---TLPS--RSDLL--RAVLAADLVGFHTYDYARHFV 303 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr---~lp~--r~~il--~~ll~aDlIgF~t~~~~~~Fl 303 (673)
..|+||+|++....++.++++. .+.++.+.+|..++-...+. ..+. ...++ ..+..+|.|.+.+....+.+.
T Consensus 101 ~~Diih~h~~~~~~~~~~~~~~-~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~~ 179 (405)
T TIGR03449 101 YYDLIHSHYWLSGQVGWLLRDR-WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARDLV 179 (405)
T ss_pred CCCeEEechHHHHHHHHHHHHh-cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHHHH
Confidence 5799999997666666666543 45788888996532111110 0111 11222 235679999999987776664
Q ss_pred HHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHH
Q 005855 304 SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQ 380 (673)
Q Consensus 304 ~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~ 380 (673)
. ..+. ...++.++|+|||.+.|.+.. . ...+.++ .++++|+++||+.+.||+..
T Consensus 180 ~----~~~~-----------~~~ki~vi~ngvd~~~~~~~~-----~---~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 180 R----HYDA-----------DPDRIDVVAPGADLERFRPGD-----R---ATERARLGLPLDTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred H----HcCC-----------ChhhEEEECCCcCHHHcCCCc-----H---HHHHHhcCCCCCCcEEEEecCCCcccCHHH
Confidence 3 1121 235788999999999886431 0 1123333 36789999999999999999
Q ss_pred HHHHHHHHHHhCcCccCceEEEEEEcCCCCCh-HHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH
Q 005855 381 KLLAFEKFLEENSDWRGKVVLLQIAVPTRTDV-PEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV 459 (673)
Q Consensus 381 ~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~-~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ 459 (673)
+++|++++++++|+. ++.|+++|.+.. ++ ++. +++++++.+.+.. ..|. |.|.++.+++..+|+.
T Consensus 237 li~a~~~l~~~~~~~--~~~l~ivG~~~~-~g~~~~----~~l~~~~~~~~l~------~~v~-~~g~~~~~~~~~~l~~ 302 (405)
T TIGR03449 237 LLRAVAELLDRDPDR--NLRVIVVGGPSG-SGLATP----DALIELAAELGIA------DRVR-FLPPRPPEELVHVYRA 302 (405)
T ss_pred HHHHHHHHHhhCCCc--ceEEEEEeCCCC-CcchHH----HHHHHHHHHcCCC------ceEE-ECCCCCHHHHHHHHHh
Confidence 999999999888872 478998986542 23 333 3344444443311 1244 5789999999999999
Q ss_pred cCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 005855 460 TDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHW 537 (673)
Q Consensus 460 ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~ 537 (673)
||++++||..||||++++|||+|+ .|+|+|..+|..+.+ +.+|++++|.|++++|++|.++++.+ +++.++..
T Consensus 303 ad~~v~ps~~E~~g~~~lEAma~G----~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~-~~~~~~~~ 377 (405)
T TIGR03449 303 ADVVAVPSYNESFGLVAMEAQACG----TPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDP-RTRIRMGA 377 (405)
T ss_pred CCEEEECCCCCCcChHHHHHHHcC----CCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCH-HHHHHHHH
Confidence 999999999999999999999995 899999999988877 56799999999999999999999854 46667777
Q ss_pred HhhHHHhhCCHHHHHHHHHHHHHHh
Q 005855 538 HNFTHVTTHTAQEWAETFVSELNDT 562 (673)
Q Consensus 538 ~~~~~v~~~~~~~W~~~fl~~L~~~ 562 (673)
++++.+++++++..++++++.+.++
T Consensus 378 ~~~~~~~~fsw~~~~~~~~~~y~~~ 402 (405)
T TIGR03449 378 AAVEHAAGFSWAATADGLLSSYRDA 402 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7788888899999999888777654
No 23
>PRK14099 glycogen synthase; Provisional
Probab=99.94 E-value=1.9e-24 Score=243.69 Aligned_cols=294 Identities=21% Similarity=0.240 Sum_probs=198.7
Q ss_pred CCCEEEEeCccchhHHHHHHhh-CCCCeEEeEeccC-----CCchhhhhc--CCcc-------------hHHHHhhhcCC
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEY-NSDMKVGWFLHTP-----FPSSEIHRT--LPSR-------------SDLLRAVLAAD 289 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~-~~~~~Ig~flH~P-----fP~~e~fr~--lp~r-------------~~il~~ll~aD 289 (673)
..||||+||||..++|.+++.. ..+.+++++.|.. ||. ..+.. +|+. .-+..++..||
T Consensus 133 ~pDIiH~Hdw~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad 211 (485)
T PRK14099 133 VPDIVHAHDWQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPR-ELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLAD 211 (485)
T ss_pred CCCEEEECCcHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCH-HHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcC
Confidence 4599999999999999998753 3467899999974 221 11111 1110 11344567788
Q ss_pred EEEEeCHHHHHHHHHHHHHHhccccCCCcee--eCCeeeEEEEeecCcChhhhhhhhcCC-------h-h---HHHHHHH
Q 005855 290 LVGFHTYDYARHFVSACTRILGFEGTPEGVE--DQGRLTRVAAFPIGIDSERFIRALEIN-------P-V---QVHIKEL 356 (673)
Q Consensus 290 lIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~--~~gr~~~v~viP~GID~~~f~~~~~~~-------~-~---~~~~~~l 356 (673)
.|.-.++.+++..... ..| .++. +..+..++.+||||||++.|.+..... + . ....+.+
T Consensus 212 ~vitVS~~~a~ei~~~---~~g-----~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l 283 (485)
T PRK14099 212 RITTVSPTYALEIQGP---EAG-----MGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAAL 283 (485)
T ss_pred eeeecChhHHHHHhcc---cCC-----cChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHH
Confidence 8777777666543210 000 0000 111345799999999999998743210 0 0 0112345
Q ss_pred HHHhc-----CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcc
Q 005855 357 QETFA-----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRING 431 (673)
Q Consensus 357 r~~~~-----~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~ 431 (673)
+++++ +.++|++||||++.||+..+++|+.++++. ++.|+++|.+ + + .+++++++++.+...
T Consensus 284 ~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~------~~~lvivG~G---~-~---~~~~~l~~l~~~~~~ 350 (485)
T PRK14099 284 QARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE------GAQLALLGSG---D-A---ELEARFRAAAQAYPG 350 (485)
T ss_pred HHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc------CcEEEEEecC---C-H---HHHHHHHHHHHHCCC
Confidence 55552 356888999999999999999999998753 3568888742 1 2 244556666544221
Q ss_pred ccCCCCcccEEEeCCCCCHHHHHHHH-HHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--c-----
Q 005855 432 RFGTLTAVPIHHLDRSLDFPALCALY-AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--G----- 503 (673)
Q Consensus 432 ~~g~~~~~pV~~~~~~v~~~el~aly-~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g----- 503 (673)
.+.++.|. .+++..+| +.||+||+||.+||||++.+|||+|| .|+|+|..+|..+.+ +
T Consensus 351 --------~v~~~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G----~ppVvs~~GGl~d~V~~~~~~~~ 416 (485)
T PRK14099 351 --------QIGVVIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYG----AVPVVARVGGLADTVVDANEMAI 416 (485)
T ss_pred --------CEEEEeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCC----CCcEEeCCCCccceeeccccccc
Confidence 24445565 57888877 56999999999999999999999994 688999999998877 2
Q ss_pred ----CceEEECCCCHHHHHHHHHHH---hcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhH
Q 005855 504 ----AGAILVNPWNITEVANAIARA---LNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563 (673)
Q Consensus 504 ----~~gllVnP~D~~~lA~aI~~a---L~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~ 563 (673)
.+|++|+|.|++++|++|.++ ++. ++.++++.++++ .++++++.-++++++..+++.
T Consensus 417 ~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d-~~~~~~l~~~~~--~~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 417 ATGVATGVQFSPVTADALAAALRKTAALFAD-PVAWRRLQRNGM--TTDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred ccCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHhh--hhcCChHHHHHHHHHHHHHHH
Confidence 369999999999999999984 433 445555554443 467888888888887766654
No 24
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.94 E-value=6.1e-25 Score=241.05 Aligned_cols=284 Identities=17% Similarity=0.180 Sum_probs=196.8
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCc--hhh-hh-cCCcc--------hH---HHHhhhcCCEEEEeC
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPS--SEI-HR-TLPSR--------SD---LLRAVLAADLVGFHT 295 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~--~e~-fr-~lp~r--------~~---il~~ll~aDlIgF~t 295 (673)
..|+|++|. .+....++++..|++++..++|..+-. .+. |. ..+.+ .. ....+..+|.|...+
T Consensus 87 ~pdvi~~h~--~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s 164 (396)
T cd03818 87 RPDVIVAHP--GWGETLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADAGVSPT 164 (396)
T ss_pred CCCEEEECC--ccchhhhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCEEECCC
Confidence 359999994 555666789999999888877644311 110 10 11111 11 224567788888776
Q ss_pred HHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHH---hcCCceEEEeec-
Q 005855 296 YDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQET---FAGRKVMLGVDR- 371 (673)
Q Consensus 296 ~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~---~~~~~iIl~VgR- 371 (673)
......|.. . + ..++.++|+|||.+.|.+.... ...++.. ..++++|+++||
T Consensus 165 ~~~~~~~~~----~-----------~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~~~~~~~~~i~~vgR~ 220 (396)
T cd03818 165 RWQRSTFPA----E-----------L---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGRVLTPGDEVITFVARN 220 (396)
T ss_pred HHHHhhCcH----h-----------h---ccceEEeCCCccccccCCCchh------hhcccccccCCCCCeEEEEECCC
Confidence 544333211 0 1 1478899999999998764211 0111111 136788999998
Q ss_pred ccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChH--H-HHHHHHHHHHHHHhhccccCCCCcccEEEeCCCC
Q 005855 372 LDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVP--E-YQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSL 448 (673)
Q Consensus 372 Ld~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~--e-y~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v 448 (673)
+.+.||+..+++|+..+.+++|++ .|+++|......+. + ...+++. +..+++.+.+ ...|+ |.|.+
T Consensus 221 l~~~Kg~~~ll~a~~~l~~~~~~~----~lvivG~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~---~~~V~-f~G~v 289 (396)
T cd03818 221 LEPYRGFHVFMRALPRLLRARPDA----RVVIVGGDGVSYGAPPPDGESWKQH---MLDELGGRLD---LSRVH-FLGRV 289 (396)
T ss_pred cccccCHHHHHHHHHHHHHHCCCc----EEEEEcCCCcccCCCCCCcccHHHH---HHHHhhcccC---cceEE-EeCCC
Confidence 999999999999999999888865 48888853211000 0 0011111 2222221111 12355 57899
Q ss_pred CHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhc
Q 005855 449 DFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 449 ~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~ 526 (673)
+.+++.++|+.||++++||..||||++++|||||| .|+|+|+.+|..+.+ |.+|++|+|.|++++|++|.++++
T Consensus 290 ~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G----~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~ 365 (396)
T cd03818 290 PYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACG----CLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLD 365 (396)
T ss_pred CHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCC----CCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999995 899999999988888 468999999999999999999998
Q ss_pred CCHHHHHHHHHHhhHHHhh-CCHHHHHHHHH
Q 005855 527 MSPEEREKRHWHNFTHVTT-HTAQEWAETFV 556 (673)
Q Consensus 527 m~~~er~~r~~~~~~~v~~-~~~~~W~~~fl 556 (673)
++ +++..+.+++++++.+ +++...+++|+
T Consensus 366 ~~-~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 366 DP-ARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred CH-HHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 75 5778888889999876 77666666654
No 25
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.94 E-value=3.8e-24 Score=240.21 Aligned_cols=313 Identities=22% Similarity=0.247 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhC-----CCCeEEeEeccCCCc----hhhhhc--CCc--
Q 005855 211 FAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYN-----SDMKVGWFLHTPFPS----SEIHRT--LPS-- 277 (673)
Q Consensus 211 w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~-----~~~~Ig~flH~PfP~----~e~fr~--lp~-- 277 (673)
...|...++...+.+.+.-...|+||+||+|..++|.+++... .+.++.+..|.+.+. ...+.. +++
T Consensus 109 ~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~ 188 (476)
T cd03791 109 AERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEE 188 (476)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccc
Confidence 3344445555555555443467999999999999999998874 578999999987431 111111 111
Q ss_pred ------------chHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCcee--eCCeeeEEEEeecCcChhhhhhh
Q 005855 278 ------------RSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVE--DQGRLTRVAAFPIGIDSERFIRA 343 (673)
Q Consensus 278 ------------r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~--~~gr~~~v~viP~GID~~~f~~~ 343 (673)
..-+..++..||.|...++.+++...+. .. ..++. ...+..++.++|||||.+.|.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~-------~~-~~gl~~~~~~~~~ki~~I~NGid~~~~~p~ 260 (476)
T cd03791 189 LFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTP-------EF-GEGLDGLLRARAGKLSGILNGIDYDVWNPA 260 (476)
T ss_pred hhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCC-------CC-CcchHHHHHhccCCeEEEeCCCcCcccCcc
Confidence 0123344667888877777766654320 00 00110 11234689999999999998764
Q ss_pred hcCC-----------hhHHHHHHHHHHh-----cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcC
Q 005855 344 LEIN-----------PVQVHIKELQETF-----AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVP 407 (673)
Q Consensus 344 ~~~~-----------~~~~~~~~lr~~~-----~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~p 407 (673)
.... .-......+++++ .++++|+++||+.+.||+..+++|++++.++. +.|+++|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~------~~lvi~G~g 334 (476)
T cd03791 261 TDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELG------GQLVILGSG 334 (476)
T ss_pred ccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcC------cEEEEEecC
Confidence 3211 0011223455554 36789999999999999999999999987642 568888743
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCC
Q 005855 408 TRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKK 487 (673)
Q Consensus 408 sr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~ 487 (673)
+ + .+.+.+++++.+.. ..++++.+ .+.+++..+|+.||++++||.+||||++.+|||+|+
T Consensus 335 ---~-~---~~~~~~~~~~~~~~--------~~v~~~~~-~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G---- 394 (476)
T cd03791 335 ---D-P---EYEEALRELAARYP--------GRVAVLIG-YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYG---- 394 (476)
T ss_pred ---C-H---HHHHHHHHHHHhCC--------CcEEEEEe-CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCC----
Confidence 1 2 33455555554421 13555544 457788899999999999999999999999999995
Q ss_pred ceEEEeCCCCchhhc--cC------ceEEECCCCHHHHHHHHHHHhcCC--HHHHHHHHHHhhHHHhhCCHHHHHHHHHH
Q 005855 488 GVLILSEFAGAAQSL--GA------GAILVNPWNITEVANAIARALNMS--PEEREKRHWHNFTHVTTHTAQEWAETFVS 557 (673)
Q Consensus 488 g~lVlSe~aG~~~~l--g~------~gllVnP~D~~~lA~aI~~aL~m~--~~er~~r~~~~~~~v~~~~~~~W~~~fl~ 557 (673)
.|+|+|..+|..+.+ +. +|++|+|.|+++++++|.+++++. ++++.++.+++.+ ..++++.-++++++
T Consensus 395 ~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 472 (476)
T cd03791 395 TVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYLE 472 (476)
T ss_pred CCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 899999999999988 34 899999999999999999998643 2333333333322 35777777777766
Q ss_pred HH
Q 005855 558 EL 559 (673)
Q Consensus 558 ~L 559 (673)
..
T Consensus 473 ~y 474 (476)
T cd03791 473 LY 474 (476)
T ss_pred HH
Confidence 54
No 26
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.93 E-value=1.4e-23 Score=243.38 Aligned_cols=327 Identities=15% Similarity=0.153 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhc-CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCC----chhh-hhcCC------cc-hHHH
Q 005855 216 KANQMFADVVNKHY-KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFP----SSEI-HRTLP------SR-SDLL 282 (673)
Q Consensus 216 ~vN~~fA~~i~~~~-~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP----~~e~-fr~lp------~r-~~il 282 (673)
.+....++.+.... ...|+||.|.+.--+++..++++. +++..+..|..-. .... +..+. .+ ..-+
T Consensus 369 ~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~l-gVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~ 447 (784)
T TIGR02470 369 TFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKL-GVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADL 447 (784)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhc-CCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHH
Confidence 33344444443332 246999999988888888887765 4776666775411 1110 01010 01 0012
Q ss_pred HhhhcCCEEEEeCHHHHHHHHHHHHHHhcc--ccCCCce-e-eCC---eeeEEEEeecCcChhhhhhhhcCChhH-HHH-
Q 005855 283 RAVLAADLVGFHTYDYARHFVSACTRILGF--EGTPEGV-E-DQG---RLTRVAAFPIGIDSERFIRALEINPVQ-VHI- 353 (673)
Q Consensus 283 ~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~--~~~~~~i-~-~~g---r~~~v~viP~GID~~~f~~~~~~~~~~-~~~- 353 (673)
..|..||.|.-.|+.....-...+..+ +. ..+..++ . .+| ...|+.++|+|+|++.|.+........ ...
T Consensus 448 ~~~~~AD~IItsT~qEi~~~~~~v~qY-~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~ 526 (784)
T TIGR02470 448 IAMNAADFIITSTYQEIAGTKDSVGQY-ESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHP 526 (784)
T ss_pred HHHhcCCEEEECcHHHhhhhhhhhhhh-hhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhc
Confidence 557789999988864432111111100 00 0000011 0 111 224889999999999998743211100 000
Q ss_pred ---------HHHHHHh-----cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCC---ChHHHH
Q 005855 354 ---------KELQETF-----AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRT---DVPEYQ 416 (673)
Q Consensus 354 ---------~~lr~~~-----~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~---~~~ey~ 416 (673)
...++.+ +++++|++|||+++.||+..+++||.++.+. +.++.|++||++... ...+..
T Consensus 527 ~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l----~~~~~LVIVGGg~~~~~s~d~ee~ 602 (784)
T TIGR02470 527 EIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKL----RELVNLVVVAGKLDAKESKDREEQ 602 (784)
T ss_pred chhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhh----CCCeEEEEEeCCcccccccchhHH
Confidence 0111222 3678999999999999999999999876433 234678988865321 111222
Q ss_pred HHHHHHHHHHHhhccccCCCCcccEEEeCCC-CCHHHHHHHHH----HcCEEEEcCCCcCCChhHHHHHhhccCCCceEE
Q 005855 417 RLTSQVHEIVGRINGRFGTLTAVPIHHLDRS-LDFPALCALYA----VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLI 491 (673)
Q Consensus 417 ~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~-v~~~el~aly~----~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lV 491 (673)
+..+++.+++.+.+ ..+ .|.+ .|. .+..++..+|+ .+||||+||.+||||+|++|||||| .|+|
T Consensus 603 ~~i~~L~~la~~~g----L~g--~V~f-lG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcG----lPVV 671 (784)
T TIGR02470 603 AEIEKMHNLIDQYQ----LHG--QIRW-IGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCG----LPTF 671 (784)
T ss_pred HHHHHHHHHHHHhC----CCC--eEEE-ccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcC----CCEE
Confidence 33445666665533 222 3554 454 45666667775 2479999999999999999999995 9999
Q ss_pred EeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhc---CCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHH
Q 005855 492 LSEFAGAAQSL--GAGAILVNPWNITEVANAIARALN---MSPEEREKRHWHNFTHV-TTHTAQEWAETFVSEL 559 (673)
Q Consensus 492 lSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~---m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L 559 (673)
+|..+|..+++ |.+|++|+|.|++++|++|.++++ ..++.+.++.+++++++ ++|+|...++++++..
T Consensus 672 AT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 672 ATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred EcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999988 678999999999999999999874 24556677777778877 6789999888887655
No 27
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.93 E-value=2.9e-23 Score=228.06 Aligned_cols=279 Identities=15% Similarity=0.158 Sum_probs=196.1
Q ss_pred CCCEEEEeCccchhH-HHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHH-hhhcCCEEEEeCHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFL-PKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLR-AVLAADLVGFHTYDYARHFVSACTR 308 (673)
Q Consensus 231 ~~DvVwvHDyhl~ll-p~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~-~ll~aDlIgF~t~~~~~~Fl~~~~r 308 (673)
..|+||+|+++.... ...+..+..+.++++..|..|+..+.... +...+.+ .+..+|.|.+.+....+.+...
T Consensus 88 ~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~--~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--- 162 (398)
T cd03796 88 RITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSI--HTNKLLRFSLADVDHVICVSHTSKENTVLR--- 162 (398)
T ss_pred CCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhH--HhhHHHHHhhccCCEEEEecHhHhhHHHHH---
Confidence 469999999765433 33333344568899999986653222110 1111222 2457899988887655443211
Q ss_pred HhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHH
Q 005855 309 ILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKF 388 (673)
Q Consensus 309 ~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~l 388 (673)
.+ ....++.++|+|+|.+.|.+.... ..+++++|+++||+.+.||+..+++|+..+
T Consensus 163 -~~-----------~~~~k~~vi~ngvd~~~f~~~~~~------------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l 218 (398)
T cd03796 163 -AS-----------LDPERVSVIPNAVDSSDFTPDPSK------------RDNDKITIVVISRLVYRKGIDLLVGIIPEI 218 (398)
T ss_pred -hC-----------CChhhEEEEcCccCHHHcCCCccc------------CCCCceEEEEEeccchhcCHHHHHHHHHHH
Confidence 01 123578899999999988653210 124678999999999999999999999999
Q ss_pred HHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC
Q 005855 389 LEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL 468 (673)
Q Consensus 389 l~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl 468 (673)
.++.|++ .|+++|. ++....+ ++++.+.+ ..+ .|. +.|.++.+++..+|+.||++++||.
T Consensus 219 ~~~~~~~----~l~i~G~-----g~~~~~l----~~~~~~~~----l~~--~v~-~~G~~~~~~~~~~l~~ad~~v~pS~ 278 (398)
T cd03796 219 CKKHPNV----RFIIGGD-----GPKRILL----EEMREKYN----LQD--RVE-LLGAVPHERVRDVLVQGHIFLNTSL 278 (398)
T ss_pred HhhCCCE----EEEEEeC-----CchHHHH----HHHHHHhC----CCC--eEE-EeCCCCHHHHHHHHHhCCEEEeCCh
Confidence 8888764 5887873 2333333 44444322 111 255 4689999999999999999999999
Q ss_pred CcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCc-eEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhC
Q 005855 469 RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAG-AILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTH 546 (673)
Q Consensus 469 ~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~-gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~ 546 (673)
.||||++++|||||| .|+|+|..+|..+.+..+ +++++ .|.++++++|.++++++.+. .....++++.+ +++
T Consensus 279 ~E~~g~~~~EAma~G----~PVI~s~~gg~~e~i~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~f 352 (398)
T cd03796 279 TEAFCIAIVEAASCG----LLVVSTRVGGIPEVLPPDMILLAE-PDVESIVRKLEEAISILRTG-KHDPWSFHNRVKKMY 352 (398)
T ss_pred hhccCHHHHHHHHcC----CCEEECCCCCchhheeCCceeecC-CCHHHHHHHHHHHHhChhhh-hhHHHHHHHHHHhhC
Confidence 999999999999995 899999999999888433 44454 49999999999999876533 34445555544 678
Q ss_pred CHHHHHHHHHHHHHHhHH
Q 005855 547 TAQEWAETFVSELNDTVV 564 (673)
Q Consensus 547 ~~~~W~~~fl~~L~~~~~ 564 (673)
++..-++++++..+....
T Consensus 353 s~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 353 SWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 988889998888876543
No 28
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.93 E-value=1.8e-23 Score=234.75 Aligned_cols=273 Identities=18% Similarity=0.210 Sum_probs=196.6
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc-h---HHHHh-hhcCCEEEEeCHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR-S---DLLRA-VLAADLVGFHTYDYARHFVSA 305 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r-~---~il~~-ll~aDlIgF~t~~~~~~Fl~~ 305 (673)
+.|+||+|+...+.++.++-.+..+.++.+.+|.-+|.........+. + .+.+. ...+|.|...+......+..
T Consensus 144 kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~- 222 (465)
T PLN02871 144 KPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEA- 222 (465)
T ss_pred CCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHH-
Confidence 469999998766655554433344678888888755432110011110 0 11111 24688888888766555432
Q ss_pred HHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh----cCCceEEEeecccccCChHHH
Q 005855 306 CTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF----AGRKVMLGVDRLDMIKGIPQK 381 (673)
Q Consensus 306 ~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~----~~~~iIl~VgRLd~~KGi~~~ 381 (673)
.+. ....++.++|+|||.+.|.+..... .++.++ +++++|+++||+.+.||+..+
T Consensus 223 ----~~~----------~~~~kv~vi~nGvd~~~f~p~~~~~-------~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 223 ----AGV----------TAANRIRVWNKGVDSESFHPRFRSE-------EMRARLSGGEPEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred ----cCC----------CCcCeEEEeCCccCccccCCccccH-------HHHHHhcCCCCCCeEEEEeCCCchhhhHHHH
Confidence 110 0134788999999999987542211 122222 367899999999999999999
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcC
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~AD 461 (673)
++|++++ |+ +.|+++|. +++. +++++++.. .+|+ |.|.++.+++..+|+.||
T Consensus 282 i~a~~~~----~~----~~l~ivG~-----G~~~----~~l~~~~~~----------~~V~-f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 282 KRVMERL----PG----ARLAFVGD-----GPYR----EELEKMFAG----------TPTV-FTGMLQGDELSQAYASGD 333 (465)
T ss_pred HHHHHhC----CC----cEEEEEeC-----ChHH----HHHHHHhcc----------CCeE-EeccCCHHHHHHHHHHCC
Confidence 9998764 44 56888873 3433 344444432 1355 478999999999999999
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVANAIARALNMSPEEREKRH 536 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~ 536 (673)
++|+||..||||++++|||||| .|+|+|..+|..+.+ |.+|++|+|.|++++|++|.++++. ++.++++.
T Consensus 334 v~V~pS~~E~~g~~vlEAmA~G----~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~ 408 (465)
T PLN02871 334 VFVMPSESETLGFVVLEAMASG----VPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD-PELRERMG 408 (465)
T ss_pred EEEECCcccccCcHHHHHHHcC----CCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHH
Confidence 9999999999999999999995 899999999988877 3579999999999999999999985 45777788
Q ss_pred HHhhHHHhhCCHHHHHHHHHHH
Q 005855 537 WHNFTHVTTHTAQEWAETFVSE 558 (673)
Q Consensus 537 ~~~~~~v~~~~~~~W~~~fl~~ 558 (673)
+++++++++|++...++++++.
T Consensus 409 ~~a~~~~~~fsw~~~a~~l~~~ 430 (465)
T PLN02871 409 AAAREEVEKWDWRAATRKLRNE 430 (465)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 8889999999999999988874
No 29
>PLN00142 sucrose synthase
Probab=99.92 E-value=4.1e-23 Score=239.62 Aligned_cols=331 Identities=14% Similarity=0.116 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccC-----------CCchh-hhhcCCc
Q 005855 211 FAAYIKANQMFADVVNKHY-KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTP-----------FPSSE-IHRTLPS 277 (673)
Q Consensus 211 w~~Y~~vN~~fA~~i~~~~-~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~P-----------fP~~e-~fr~lp~ 277 (673)
|..-..++...++.+.... ...|+||.|++.-.+++..|+++. +++.++..|.- |...+ .++. ..
T Consensus 387 ~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~l-gVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~-~~ 464 (815)
T PLN00142 387 WPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKKFDDKYHF-SC 464 (815)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHh-CCCEEEEcccchhhhccccCCcccccchhhhh-hh
Confidence 4333444444444443322 246999999877778888887765 57888888842 11111 1110 01
Q ss_pred ch-HHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhcc-ccC-C------CceeeCCeeeEEEEeecCcChhhhhhhhcCCh
Q 005855 278 RS-DLLRAVLAADLVGFHTYDYARHFVSACTRILGF-EGT-P------EGVEDQGRLTRVAAFPIGIDSERFIRALEINP 348 (673)
Q Consensus 278 r~-~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~-~~~-~------~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~ 348 (673)
+- .=...|..||.|.-.|+......-..+..+-.. ..+ + +++.+. ..++.++|+|+|...|.+......
T Consensus 465 r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~--~~ki~VVppGvD~~~F~P~~~~~~ 542 (815)
T PLN00142 465 QFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF--DPKFNIVSPGADMSIYFPYTEKQK 542 (815)
T ss_pred chHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhcccccc--ccCeeEECCCCChhhcCCCChHHh
Confidence 00 012245567776655543322110000000000 000 0 111111 227889999999999875321100
Q ss_pred --------hHHHH---HHHHHHh-----cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCC-CCC
Q 005855 349 --------VQVHI---KELQETF-----AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPT-RTD 411 (673)
Q Consensus 349 --------~~~~~---~~lr~~~-----~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~ps-r~~ 411 (673)
+.+.. ...++.+ +++++|++|||+++.||+..+++||.++.+..+ ++.|++||++. ...
T Consensus 543 rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~----~~~LVIVGgg~d~~~ 618 (815)
T PLN00142 543 RLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRE----LVNLVVVGGFIDPSK 618 (815)
T ss_pred hHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCC----CcEEEEEECCccccc
Confidence 00000 0001111 357799999999999999999999998765544 46688888641 111
Q ss_pred --hHHHHHHHHHHHHHHHhhccccCCCCcccEEEeC---CCCCHHHHHHHHH-HcCEEEEcCCCcCCChhHHHHHhhccC
Q 005855 412 --VPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLD---RSLDFPALCALYA-VTDVALVTSLRDGMNLVSYEFVACQDL 485 (673)
Q Consensus 412 --~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~---~~v~~~el~aly~-~ADv~vv~Sl~EGf~Lv~lEamA~~~~ 485 (673)
..+..+..+++.+++.+.+- .+ .|.++. +..+.++++.+|+ ++||||+||.+||||+|++||||||
T Consensus 619 s~d~ee~~el~~L~~La~~lgL----~~--~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~G-- 690 (815)
T PLN00142 619 SKDREEIAEIKKMHSLIEKYNL----KG--QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCG-- 690 (815)
T ss_pred cccHHHHHHHHHHHHHHHHcCC----CC--cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcC--
Confidence 11111222445566655432 12 355432 2445578888777 5799999999999999999999995
Q ss_pred CCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhc---CCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHH
Q 005855 486 KKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALN---MSPEEREKRHWHNFTHV-TTHTAQEWAETFVSEL 559 (673)
Q Consensus 486 ~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~---m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L 559 (673)
.|+|+|+.+|..+.+ |.+|++|+|.|++++|++|.+++. ..++.+.++.+++++++ ++|++...++++++..
T Consensus 691 --lPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 691 --LPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred --CCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999988 678999999999999999987653 34567777788888887 6789999998887755
No 30
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.92 E-value=4.5e-23 Score=223.56 Aligned_cols=232 Identities=16% Similarity=0.184 Sum_probs=173.5
Q ss_pred cCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh--cCCc
Q 005855 287 AADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF--AGRK 364 (673)
Q Consensus 287 ~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~--~~~~ 364 (673)
.+|.+...+....+.+.. .++. ...++.++|+|||.+.|.+..... ....+..+ .++.
T Consensus 136 ~~~~~i~vs~~~~~~~~~----~~~~-----------~~~~~~vi~ngvd~~~~~~~~~~~-----~~~~~~~~~~~~~~ 195 (374)
T TIGR03088 136 LIHHYVAVSRDLEDWLRG----PVKV-----------PPAKIHQIYNGVDTERFHPSRGDR-----SPILPPDFFADESV 195 (374)
T ss_pred cCCeEEEeCHHHHHHHHH----hcCC-----------ChhhEEEeccCccccccCCCccch-----hhhhHhhcCCCCCe
Confidence 367777777665554432 1121 235688999999998886532111 11111222 3577
Q ss_pred eEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEe
Q 005855 365 VMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHL 444 (673)
Q Consensus 365 iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~ 444 (673)
+|+++||+++.||+..+++|+..++++.|+...++.|+++|. ++.. +++++++.+.+ ....++|
T Consensus 196 ~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~-----g~~~----~~~~~~~~~~~-------~~~~v~~ 259 (374)
T TIGR03088 196 VVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGD-----GPAR----GACEQMVRAAG-------LAHLVWL 259 (374)
T ss_pred EEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecC-----CchH----HHHHHHHHHcC-------CcceEEE
Confidence 999999999999999999999999999887666788998874 2322 23344443322 1234456
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHH
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIA 522 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~ 522 (673)
.|. .+++..+|+.||++|+||..||||++++|||+|| .|+|+|+.+|..+.+ |.+|++++|.|++++|++|.
T Consensus 260 ~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G----~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~ 333 (374)
T TIGR03088 260 PGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASG----LPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQ 333 (374)
T ss_pred cCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcC----CCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHH
Confidence 664 5789999999999999999999999999999995 899999999999888 56799999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHHH
Q 005855 523 RALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELND 561 (673)
Q Consensus 523 ~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~~ 561 (673)
++++. ++++..+.+++++++ .++++...++++++..++
T Consensus 334 ~l~~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 334 PYVSD-PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99985 446777778888887 688998888888776654
No 31
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.92 E-value=8e-23 Score=221.60 Aligned_cols=295 Identities=20% Similarity=0.231 Sum_probs=207.0
Q ss_pred HHHHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCc------ch-HHHHhhhcCCEEEEeC
Q 005855 223 DVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPS------RS-DLLRAVLAADLVGFHT 295 (673)
Q Consensus 223 ~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~------r~-~il~~ll~aDlIgF~t 295 (673)
..+.+.....|+|++|++....++..+++. .+.++.+..|.............+ +. .....+..+|.|.+.+
T Consensus 93 ~~~~~~~~~~Div~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s 171 (398)
T cd03800 93 RFLRREGGRPDLIHAHYWDSGLVALLLARR-LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIAST 171 (398)
T ss_pred HHHHhcCCCccEEEEecCccchHHHHHHhh-cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcC
Confidence 333333335799999998777666666544 467888888875432110000000 01 1123456799999988
Q ss_pred HHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeeccccc
Q 005855 296 YDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMI 375 (673)
Q Consensus 296 ~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~ 375 (673)
......+.. ... ....++.++|+|+|.+.|.+..... ...+.+. ...++++|+++||+++.
T Consensus 172 ~~~~~~~~~----~~~-----------~~~~~~~vi~ng~~~~~~~~~~~~~---~~~~~~~-~~~~~~~i~~~gr~~~~ 232 (398)
T cd03800 172 PQEAEELYS----LYG-----------AYPRRIRVVPPGVDLERFTPYGRAE---ARRARLL-RDPDKPRILAVGRLDPR 232 (398)
T ss_pred HHHHHHHHH----Hcc-----------ccccccEEECCCCCccceecccchh---hHHHhhc-cCCCCcEEEEEcccccc
Confidence 766555432 111 1123588999999998886542211 1111111 11467899999999999
Q ss_pred CChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHH
Q 005855 376 KGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCA 455 (673)
Q Consensus 376 KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~a 455 (673)
||+..+++|+..+.+++|+ +.|+++|.......+ ....++++++.+.+. . ..+. +.|.++.+++..
T Consensus 233 k~~~~ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~---~~~~~~~~~~~~~~~----~--~~v~-~~g~~~~~~~~~ 298 (398)
T cd03800 233 KGIDTLIRAYAELPELRER----ANLVIVGGPRDDILA---MDEEELRELARELGV----I--DRVD-FPGRVSREDLPA 298 (398)
T ss_pred cCHHHHHHHHHHHHHhCCC----eEEEEEECCCCcchh---hhhHHHHHHHHhcCC----C--ceEE-EeccCCHHHHHH
Confidence 9999999999999887765 458888864432211 222345555544321 1 1244 578999999999
Q ss_pred HHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHH
Q 005855 456 LYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEERE 533 (673)
Q Consensus 456 ly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~ 533 (673)
+|+.||++++||..||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.++++++ +++.
T Consensus 299 ~~~~adi~l~ps~~e~~~~~l~Ea~a~G----~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~-~~~~ 373 (398)
T cd03800 299 LYRAADVFVNPALYEPFGLTALEAMACG----LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDP-ALRR 373 (398)
T ss_pred HHHhCCEEEecccccccCcHHHHHHhcC----CCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCH-HHHH
Confidence 9999999999999999999999999995 899999999998888 45799999999999999999999864 5777
Q ss_pred HHHHHhhHHH-hhCCHHHHHHHHH
Q 005855 534 KRHWHNFTHV-TTHTAQEWAETFV 556 (673)
Q Consensus 534 ~r~~~~~~~v-~~~~~~~W~~~fl 556 (673)
.+..++++++ ++++++..+++|+
T Consensus 374 ~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 374 RLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 7788888888 7889998888775
No 32
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.92 E-value=5.9e-23 Score=223.14 Aligned_cols=286 Identities=21% Similarity=0.201 Sum_probs=204.2
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhh-----cCCcchH-HHHhhhcCCEEEEeCHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR-----TLPSRSD-LLRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr-----~lp~r~~-il~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
..|+||+|++...+.+.+++ +..+.++.+.+|..+|...... ....... ....+..+|.|.+.+....+.+.+
T Consensus 83 ~~divh~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 161 (388)
T TIGR02149 83 DADVVHSHTWYTFLAGHLAK-KLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMREDILK 161 (388)
T ss_pred CCCeEeecchhhhhHHHHHH-HhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHHHHHH
Confidence 46999999988776655544 3457888999998655211100 0000111 123356788888888766555432
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQK 381 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~ 381 (673)
. .-+. ...++.++|+|+|++.|.+.. ...++.++ .++++|+++||+.+.||+..+
T Consensus 162 ~---~~~~-----------~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~l 219 (388)
T TIGR02149 162 Y---YPDL-----------DPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRITRQKGVPHL 219 (388)
T ss_pred H---cCCC-----------CcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccccccCHHHH
Confidence 1 0011 135788999999998886421 11233333 356799999999999999999
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcC
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~AD 461 (673)
++|++++. ++ +.|+++|++. +. .++.+++++.+...+... ..++++.+.++.+++..+|+.||
T Consensus 220 i~a~~~l~---~~----~~l~i~g~g~--~~---~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~aD 282 (388)
T TIGR02149 220 LDAVHYIP---KD----VQVVLCAGAP--DT---PEVAEEVRQAVALLDRNR-----TGIIWINKMLPKEELVELLSNAE 282 (388)
T ss_pred HHHHHHHh---hc----CcEEEEeCCC--Cc---HHHHHHHHHHHHHhcccc-----CceEEecCCCCHHHHHHHHHhCC
Confidence 99999873 22 4466666432 11 233455555554443211 23677788999999999999999
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCH------HHHHHHHHHHhcCCHHHHH
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNI------TEVANAIARALNMSPEERE 533 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~------~~lA~aI~~aL~m~~~er~ 533 (673)
++|+||..||||++++|||+|| .|+|+|..+|..+.+ +.+|++++|.|. ++++++|.++++. ++++.
T Consensus 283 v~v~ps~~e~~g~~~lEA~a~G----~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~ 357 (388)
T TIGR02149 283 VFVCPSIYEPLGIVNLEAMACG----TPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD-PELAK 357 (388)
T ss_pred EEEeCCccCCCChHHHHHHHcC----CCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC-HHHHH
Confidence 9999999999999999999995 899999999988887 567999999998 9999999999985 45777
Q ss_pred HHHHHhhHHH-hhCCHHHHHHHHHHHHHH
Q 005855 534 KRHWHNFTHV-TTHTAQEWAETFVSELND 561 (673)
Q Consensus 534 ~r~~~~~~~v-~~~~~~~W~~~fl~~L~~ 561 (673)
++.+++++.+ ++++++.+++++++.+++
T Consensus 358 ~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 358 KMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777887776 578999999998887764
No 33
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.92 E-value=4.2e-23 Score=232.47 Aligned_cols=283 Identities=19% Similarity=0.159 Sum_probs=198.9
Q ss_pred HHHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCch---hhhhc---CCcchH--------HH-HhhhcC
Q 005855 224 VVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSS---EIHRT---LPSRSD--------LL-RAVLAA 288 (673)
Q Consensus 224 ~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~---e~fr~---lp~r~~--------il-~~ll~a 288 (673)
.+...+.+.|+||+|......++..+-.+..+.|+.+..|.-++.. +++.. .+..+. +. ..+..|
T Consensus 166 ~l~~~~~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 245 (475)
T cd03813 166 AIARPLPKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAA 245 (475)
T ss_pred HhccCCCCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455779999998765555555545556789999999765421 22211 000000 11 123467
Q ss_pred CEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEE
Q 005855 289 DLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLG 368 (673)
Q Consensus 289 DlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~ 368 (673)
|.|...+........ .++....++.++|||||.+.|.+.... ....++++|++
T Consensus 246 d~Ii~~s~~~~~~~~----------------~~g~~~~ki~vIpNgid~~~f~~~~~~-----------~~~~~~~~i~~ 298 (475)
T cd03813 246 DRITTLYEGNRERQI----------------EDGADPEKIRVIPNGIDPERFAPARRA-----------RPEKEPPVVGL 298 (475)
T ss_pred CEEEecCHHHHHHHH----------------HcCCCHHHeEEeCCCcCHHHcCCcccc-----------ccCCCCcEEEE
Confidence 777665543322111 111224578899999999988753210 11246789999
Q ss_pred eecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCC
Q 005855 369 VDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSL 448 (673)
Q Consensus 369 VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v 448 (673)
+||+.+.||+..+++|++.+.++.|++ .|+++|... .+ + .+.+++++++.+.+.. ..|++ .|
T Consensus 299 vGrl~~~Kg~~~li~a~~~l~~~~p~~----~l~IvG~g~-~~-~---~~~~e~~~li~~l~l~------~~V~f-~G-- 360 (475)
T cd03813 299 IGRVVPIKDIKTFIRAAAIVRKKIPDA----EGWVIGPTD-ED-P---EYAEECRELVESLGLE------DNVKF-TG-- 360 (475)
T ss_pred EeccccccCHHHHHHHHHHHHHhCCCe----EEEEECCCC-cC-h---HHHHHHHHHHHHhCCC------CeEEE-cC--
Confidence 999999999999999999998888764 588777432 11 2 3456666676665421 13554 55
Q ss_pred CHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccC--------ceEEECCCCHHHHHHH
Q 005855 449 DFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGA--------GAILVNPWNITEVANA 520 (673)
Q Consensus 449 ~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~--------~gllVnP~D~~~lA~a 520 (673)
.+++..+|+.||++|+||..||||++++|||||| .|+|+|+.+|+.+.+.. +|++|+|.|++++|++
T Consensus 361 -~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G----~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~a 435 (475)
T cd03813 361 -FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAG----IPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARA 435 (475)
T ss_pred -CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcC----CCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHH
Confidence 5789999999999999999999999999999995 89999999999888733 7999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhHHHhh-CCHHHHHHHHHH
Q 005855 521 IARALNMSPEEREKRHWHNFTHVTT-HTAQEWAETFVS 557 (673)
Q Consensus 521 I~~aL~m~~~er~~r~~~~~~~v~~-~~~~~W~~~fl~ 557 (673)
|.++++.+ +++.++.+++++++++ ++++..+++|.+
T Consensus 436 i~~ll~~~-~~~~~~~~~a~~~v~~~~s~~~~~~~y~~ 472 (475)
T cd03813 436 ILRLLKDP-ELRRAMGEAGRKRVERYYTLERMIDSYRR 472 (475)
T ss_pred HHHHhcCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999864 5777888888888866 466777776654
No 34
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.91 E-value=2.4e-22 Score=222.93 Aligned_cols=274 Identities=18% Similarity=0.193 Sum_probs=187.1
Q ss_pred CCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcC-------------Ccch--HH-----------H--H
Q 005855 232 GDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTL-------------PSRS--DL-----------L--R 283 (673)
Q Consensus 232 ~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~l-------------p~r~--~i-----------l--~ 283 (673)
+|+|..|--+...+ .+.+..+++++++++|.|.-+.+.+..+ ..+. .+ + .
T Consensus 108 pDv~i~~~g~~~~~--~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~ 185 (419)
T cd03806 108 PDIFIDTMGYPFTY--PLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGL 185 (419)
T ss_pred CCEEEEcCCcccHH--HHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHHHHHH
Confidence 48665553233322 3445567889999999665455554322 1111 01 1 1
Q ss_pred hhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCC
Q 005855 284 AVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGR 363 (673)
Q Consensus 284 ~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~ 363 (673)
.+..||.|...+.....++.+ .. +...++.++|+|||.+.|.+... ....++
T Consensus 186 ~~~~aD~ii~~S~~~~~~~~~----~~------------~~~~~~~vi~~gvd~~~~~~~~~------------~~~~~~ 237 (419)
T cd03806 186 AGSFADVVMVNSTWTRNHIRS----LW------------KRNTKPSIVYPPCDVEELLKLPL------------DEKTRE 237 (419)
T ss_pred HhhcCCEEEECCHHHHHHHHH----Hh------------CcCCCcEEEcCCCCHHHhccccc------------ccccCC
Confidence 245778887776544444321 11 11236789999999988764311 012356
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHhCcCc-cCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEE
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEENSDW-RGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIH 442 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~-~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~ 442 (673)
++|+++||+.+.||+..+|+||.++.+..|+. ..++.|+++|...... ..++.+++++++.+.+-. + .|+
T Consensus 238 ~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~---~~~~~~~L~~~~~~l~l~----~--~V~ 308 (419)
T cd03806 238 NQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNED---DEKRVEDLKLLAKELGLE----D--KVE 308 (419)
T ss_pred cEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcc---cHHHHHHHHHHHHHhCCC----C--eEE
Confidence 79999999999999999999999999888752 1257799888532111 123455666666554321 1 355
Q ss_pred EeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchh-hc-----cCceEEECCCCHHH
Q 005855 443 HLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQ-SL-----GAGAILVNPWNITE 516 (673)
Q Consensus 443 ~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~-~l-----g~~gllVnP~D~~~ 516 (673)
|.+.++.+++..+|+.||+++.||..||||++++|||||| .|+|+|+.+|..+ .+ |.+|++++ |+++
T Consensus 309 -f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G----~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~ 381 (419)
T cd03806 309 -FVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAG----LIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEE 381 (419)
T ss_pred -EecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcC----CcEEEEcCCCCchheeeccCCCCceEEeC--CHHH
Confidence 5689999999999999999999999999999999999995 7899999888654 34 45799974 9999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHH
Q 005855 517 VANAIARALNMSPEEREKRHWHNFTHVTTHTAQEW 551 (673)
Q Consensus 517 lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W 551 (673)
+|++|.++++++++++..+.++.++..++++.+..
T Consensus 382 la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f 416 (419)
T cd03806 382 YAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEF 416 (419)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHh
Confidence 99999999999887766655555555566765543
No 35
>PLN02949 transferase, transferring glycosyl groups
Probab=99.91 E-value=6.1e-22 Score=221.71 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=197.3
Q ss_pred CEEEEeCccc-hhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc-------------------hH----H---HH--
Q 005855 233 DVVWCHDYHL-MFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR-------------------SD----L---LR-- 283 (673)
Q Consensus 233 DvVwvHDyhl-~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r-------------------~~----i---l~-- 283 (673)
|.|||-.--. +.+| ++| ....+|++.+|.|.-+.++...+-.+ +. . +.
T Consensus 140 p~v~vDt~~~~~~~p-l~~--~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~ 216 (463)
T PLN02949 140 PLYFFDTSGYAFTYP-LAR--LFGCKVVCYTHYPTISSDMISRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGL 216 (463)
T ss_pred CCEEEeCCCcccHHH-HHH--hcCCcEEEEEeCCcchHHHHHHHhhcccccCccchhhccchhHHHHHHHHHHHHHHHHH
Confidence 4578743221 2222 233 34689999999887776554433100 00 0 11
Q ss_pred hhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCC
Q 005855 284 AVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGR 363 (673)
Q Consensus 284 ~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~ 363 (673)
.+..+|.|...+....+++. +.. +...++.++++|+|.+.|..... ....++
T Consensus 217 ~~~~ad~ii~nS~~t~~~l~----~~~------------~~~~~i~vvyp~vd~~~~~~~~~------------~~~~~~ 268 (463)
T PLN02949 217 VGRCAHLAMVNSSWTKSHIE----ALW------------RIPERIKRVYPPCDTSGLQALPL------------ERSEDP 268 (463)
T ss_pred HcCCCCEEEECCHHHHHHHH----HHc------------CCCCCeEEEcCCCCHHHcccCCc------------cccCCC
Confidence 12467777766554333332 111 11236778999999877632110 001356
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEE
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHH 443 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~ 443 (673)
++++++||+.+.||+..+|+||.+++++.++-..++.|+++|.... ++..++.+++++++.+.+- .+ .|.
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~---~~~~~~~~eL~~la~~l~L----~~--~V~- 338 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRN---KEDEERLQKLKDRAKELGL----DG--DVE- 338 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCC---cccHHHHHHHHHHHHHcCC----CC--cEE-
Confidence 7899999999999999999999999875543223567998886421 1122334556666655332 11 355
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchh-hc-----cCceEEECCCCHHHH
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQ-SL-----GAGAILVNPWNITEV 517 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~-~l-----g~~gllVnP~D~~~l 517 (673)
|.+.++.+++.++|+.||+++.||..||||++++|||||| .|+|++..+|..+ ++ |.+|++++ |++++
T Consensus 339 f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G----~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~l 412 (463)
T PLN02949 339 FHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAG----AVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEY 412 (463)
T ss_pred EeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcC----CcEEEeCCCCCcceeeecCCCCcccccCC--CHHHH
Confidence 4689999999999999999999999999999999999994 7999999988753 33 34688874 99999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhH
Q 005855 518 ANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563 (673)
Q Consensus 518 A~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~ 563 (673)
|++|.++++++++++.++.+++++.+.+++.+..++++++.++...
T Consensus 413 a~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~ 458 (463)
T PLN02949 413 ADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRPIL 458 (463)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999998887888888899999999999999999988877654
No 36
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.91 E-value=3.3e-22 Score=214.90 Aligned_cols=275 Identities=17% Similarity=0.136 Sum_probs=194.2
Q ss_pred HHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCc--hhhhhcCCc--chHHH-HhhhcCCEEEEeCHHHH
Q 005855 225 VNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPS--SEIHRTLPS--RSDLL-RAVLAADLVGFHTYDYA 299 (673)
Q Consensus 225 i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~--~e~fr~lp~--r~~il-~~ll~aDlIgF~t~~~~ 299 (673)
+.+..+ .|+||+|+....+....+.+ ..+.++.+.+|..... .......++ ...+. ..+..+|.|.+.+....
T Consensus 77 ~~~~~~-~dvvh~~~~~~~~~~~~~~~-~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 154 (367)
T cd05844 77 LLRRHR-PDLVHAHFGFDGVYALPLAR-RLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIR 154 (367)
T ss_pred HHHhhC-CCEEEeccCchHHHHHHHHH-HcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHH
Confidence 344444 49999997654443333333 3457888888853211 111100001 11122 22456899988886555
Q ss_pred HHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChH
Q 005855 300 RHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIP 379 (673)
Q Consensus 300 ~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~ 379 (673)
+.+.. .+. ...++.++|+|+|.+.|.+... ..+++.|+++||+.+.||+.
T Consensus 155 ~~~~~-----~~~-----------~~~~i~vi~~g~d~~~~~~~~~--------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 155 DRLLA-----LGF-----------PPEKVHVHPIGVDTAKFTPATP--------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred HHHHH-----cCC-----------CHHHeEEecCCCCHHhcCCCCC--------------CCCCcEEEEEEeeccccChH
Confidence 44432 121 2347889999999988764311 13467899999999999999
Q ss_pred HHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH
Q 005855 380 QKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV 459 (673)
Q Consensus 380 ~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ 459 (673)
.+++|+..+.+++|+ +.|+++|. ++. .+++++++.+.+. . ..|. +.|.++.+++..+|+.
T Consensus 205 ~li~a~~~l~~~~~~----~~l~ivG~-----g~~----~~~~~~~~~~~~~----~--~~v~-~~g~~~~~~l~~~~~~ 264 (367)
T cd05844 205 LLLEAFARLARRVPE----VRLVIIGD-----GPL----LAALEALARALGL----G--GRVT-FLGAQPHAEVRELMRR 264 (367)
T ss_pred HHHHHHHHHHHhCCC----eEEEEEeC-----chH----HHHHHHHHHHcCC----C--CeEE-ECCCCCHHHHHHHHHh
Confidence 999999999888776 45888873 232 2344555544221 1 1244 5789999999999999
Q ss_pred cCEEEEcCC------CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHH
Q 005855 460 TDVALVTSL------RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEE 531 (673)
Q Consensus 460 ADv~vv~Sl------~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~e 531 (673)
||++++||. .||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.++++.+ +.
T Consensus 265 ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G----~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~-~~ 339 (367)
T cd05844 265 ARIFLQPSVTAPSGDAEGLPVVLLEAQASG----VPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADP-DL 339 (367)
T ss_pred CCEEEECcccCCCCCccCCchHHHHHHHcC----CCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCH-HH
Confidence 999999997 599999999999995 899999999998877 56899999999999999999999854 46
Q ss_pred HHHHHHHhhHHH-hhCCHHHHHHHHH
Q 005855 532 REKRHWHNFTHV-TTHTAQEWAETFV 556 (673)
Q Consensus 532 r~~r~~~~~~~v-~~~~~~~W~~~fl 556 (673)
+.++..++++++ +.++++.+++++.
T Consensus 340 ~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 340 RARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 777778888887 5788888888764
No 37
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.91 E-value=3.7e-22 Score=212.84 Aligned_cols=282 Identities=20% Similarity=0.258 Sum_probs=196.6
Q ss_pred HHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHH
Q 005855 226 NKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSA 305 (673)
Q Consensus 226 ~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~ 305 (673)
++..+ .|+||+|.+|..++..+++...+..++....|...+...+ +. +-..+.. ..++.+...+....+.|...
T Consensus 75 ~~~~~-pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~~~~-~~--~~~~~~~--~~~~~~~~~s~~~~~~~~~~ 148 (360)
T cd04951 75 LRQFK-PDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEGGRL-RM--LAYRLTD--FLSDLTTNVSKEALDYFIAS 148 (360)
T ss_pred HHhcC-CCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCchhHH-HH--HHHHHHh--hccCceEEEcHHHHHHHHhc
Confidence 33344 5899999999888888887777777888888864322111 00 0001111 12444544555444444321
Q ss_pred HHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHH
Q 005855 306 CTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKL 382 (673)
Q Consensus 306 ~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L 382 (673)
+ .-...++.++|+|+|...|.+.. .....+++.+ .++++++++||+.+.||+..++
T Consensus 149 -----~----------~~~~~~~~~i~ng~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li 207 (360)
T cd04951 149 -----K----------AFNANKSFVVYNGIDTDRFRKDP------ARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLL 207 (360)
T ss_pred -----c----------CCCcccEEEEccccchhhcCcch------HHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHH
Confidence 0 01134788999999998876432 1122344444 3678999999999999999999
Q ss_pred HHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCE
Q 005855 383 LAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDV 462 (673)
Q Consensus 383 ~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv 462 (673)
+|+.++.+++|++ .|+++|. +++.+. +++.+.+.+.. ..|.+ .|.. +++..+|+.||+
T Consensus 208 ~a~~~l~~~~~~~----~l~i~G~-----g~~~~~----~~~~~~~~~~~------~~v~~-~g~~--~~~~~~~~~ad~ 265 (360)
T cd04951 208 KAFAKLLSDYLDI----KLLIAGD-----GPLRAT----LERLIKALGLS------NRVKL-LGLR--DDIAAYYNAADL 265 (360)
T ss_pred HHHHHHHhhCCCe----EEEEEcC-----CCcHHH----HHHHHHhcCCC------CcEEE-eccc--ccHHHHHHhhce
Confidence 9999998888764 5887873 232233 33343333211 12554 5543 678999999999
Q ss_pred EEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHH
Q 005855 463 ALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTH 542 (673)
Q Consensus 463 ~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~ 542 (673)
+++||..||||++++|||||| .|+|+|+.+|..+.+..+|++++|.|++++|++|.++++++++.+..+..+....
T Consensus 266 ~v~~s~~e~~~~~~~Ea~a~G----~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 341 (360)
T cd04951 266 FVLSSAWEGFGLVVAEAMACE----LPVVATDAGGVREVVGDSGLIVPISDPEALANKIDEILKMSGEERDIIGARRERI 341 (360)
T ss_pred EEecccccCCChHHHHHHHcC----CCEEEecCCChhhEecCCceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999995 8999999999888886689999999999999999999987776666665553334
Q ss_pred HhhCCHHHHHHHHHHHHH
Q 005855 543 VTTHTAQEWAETFVSELN 560 (673)
Q Consensus 543 v~~~~~~~W~~~fl~~L~ 560 (673)
.+.++++.+++.+++..+
T Consensus 342 ~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 342 VKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHhcCHHHHHHHHHHHhh
Confidence 578899999998876543
No 38
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.91 E-value=5.9e-22 Score=221.31 Aligned_cols=290 Identities=11% Similarity=0.022 Sum_probs=188.0
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+||+|++...++..+.........|....|. +++...-+.+-+.. ..+..++++.-.+. ++.+.....+.+.
T Consensus 280 rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~-~~~~~~~r~~~~e~---~~~~~a~~i~~~sd-~v~~s~~v~~~l~ 354 (578)
T PRK15490 280 KLDYLSVWQDGACLMIALAALIAGVPRIQLGLRG-LPPVVRKRLFKPEY---EPLYQALAVVPGVD-FMSNNHCVTRHYA 354 (578)
T ss_pred CCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecc-cCCcchhhHHHHHH---HHhhhhceeEecch-hhhccHHHHHHHH
Confidence 3499999999987776665554443343555665 33211111000000 12333444433332 2222221111111
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-cCCceEEEeecccccCChHHHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF-AGRKVMLGVDRLDMIKGIPQKLLAFEKFL 389 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~~~~iIl~VgRLd~~KGi~~~L~Af~~ll 389 (673)
.. ++-...++.+||||||++.|.+....+ ......++..+ .+.++|++|+|+.+.||...+|+|+.+++
T Consensus 355 ~~--------lgip~~KI~VIyNGVD~~rf~p~~~~~--~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ll 424 (578)
T PRK15490 355 DW--------LKLEAKHFQVVYNGVLPPSTEPSSEVP--HKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYL 424 (578)
T ss_pred HH--------hCCCHHHEEEEeCCcchhhcCccchhh--HHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHH
Confidence 00 111356899999999999887643111 01111222223 34578899999999999999999999999
Q ss_pred HhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCC
Q 005855 390 EENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLR 469 (673)
Q Consensus 390 ~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~ 469 (673)
+++|++ .|+++|. +++ ++++++++.+.+. . ..|+| .|. .+++..+|+.|||||+||.+
T Consensus 425 k~~pdi----rLvIVGd-----G~~----~eeLk~la~elgL----~--d~V~F-lG~--~~Dv~~~LaaADVfVlPS~~ 482 (578)
T PRK15490 425 QHHPAT----RFVLVGD-----GDL----RAEAQKRAEQLGI----L--ERILF-VGA--SRDVGYWLQKMNVFILFSRY 482 (578)
T ss_pred hHCCCe----EEEEEeC-----chh----HHHHHHHHHHcCC----C--CcEEE-CCC--hhhHHHHHHhCCEEEEcccc
Confidence 888864 5888873 333 3345555544331 1 13554 565 46899999999999999999
Q ss_pred cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCC--HHHHHHHHHHhhHHH-h
Q 005855 470 DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMS--PEEREKRHWHNFTHV-T 544 (673)
Q Consensus 470 EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~--~~er~~r~~~~~~~v-~ 544 (673)
||||++++|||||| .|+|+|..+|..+.+ |.+|++|+|.|++++++++..+..+. .+.+..+.+++++++ +
T Consensus 483 EGfp~vlLEAMA~G----lPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e 558 (578)
T PRK15490 483 EGLPNVLIEAQMVG----VPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQE 558 (578)
T ss_pred cCccHHHHHHHHhC----CCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999995 899999999999887 78999999999999998884433221 123445567778887 5
Q ss_pred hCCHHHHHHHHHHHHHH
Q 005855 545 THTAQEWAETFVSELND 561 (673)
Q Consensus 545 ~~~~~~W~~~fl~~L~~ 561 (673)
+|+++.-++.|++.++.
T Consensus 559 ~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 559 RFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 68999988888877664
No 39
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.91 E-value=6.7e-22 Score=215.15 Aligned_cols=283 Identities=17% Similarity=0.146 Sum_probs=190.7
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHH---------HhhhcCCEEEEeCHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLL---------RAVLAADLVGFHTYDYAR 300 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il---------~~ll~aDlIgF~t~~~~~ 300 (673)
...|+|++|+..... + +++... ..++.+.+|.| .........+.+.+. ..+..+|.|...+.....
T Consensus 93 ~~~Dvi~~~~~~~~~-~-~~~~~~-~~~~i~~~h~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~ 167 (392)
T cd03805 93 EKYDVFIVDQVSACV-P-LLKLFS-PSKILFYCHFP--DQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTAS 167 (392)
T ss_pred CCCCEEEEcCcchHH-H-HHHHhc-CCcEEEEEecC--hHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHH
Confidence 467999999866432 2 233333 38899999954 221111001111111 124457888777654443
Q ss_pred HHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHH
Q 005855 301 HFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQ 380 (673)
Q Consensus 301 ~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~ 380 (673)
.+.. .++.. ....+.++|+|||.+.|.+..... ........+++++|+++||+.+.||++.
T Consensus 168 ~~~~----~~~~~----------~~~~~~vi~n~vd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~grl~~~Kg~~~ 228 (392)
T cd03805 168 VFKK----TFPSL----------AKNPREVVYPCVDTDSFESTSEDP-----DPGLLIPKSGKKTFLSINRFERKKNIAL 228 (392)
T ss_pred HHHH----Hhccc----------ccCCcceeCCCcCHHHcCcccccc-----cccccccCCCceEEEEEeeecccCChHH
Confidence 3321 11100 112335889999999886542211 0011112256789999999999999999
Q ss_pred HHHHHHHHHHhC---cCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHh-hccccCCCCcccEEEeCCCCCHHHHHHH
Q 005855 381 KLLAFEKFLEEN---SDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGR-INGRFGTLTAVPIHHLDRSLDFPALCAL 456 (673)
Q Consensus 381 ~L~Af~~ll~~~---P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~-IN~~~g~~~~~pV~~~~~~v~~~el~al 456 (673)
+++|++++.++. |+ +.|+++|.+... ..+..++.+++++++.+ .+- . ..|+ |.|.++.+++..+
T Consensus 229 ll~a~~~l~~~~~~~~~----~~l~i~G~~~~~-~~~~~~~~~~l~~~~~~~~~l----~--~~V~-f~g~~~~~~~~~~ 296 (392)
T cd03805 229 AIEAFAILKDKLAEFKN----VRLVIAGGYDPR-VAENVEYLEELQRLAEELLLL----E--DQVI-FLPSISDSQKELL 296 (392)
T ss_pred HHHHHHHHHhhcccccC----eEEEEEcCCCCC-CchhHHHHHHHHHHHHHhcCC----C--ceEE-EeCCCChHHHHHH
Confidence 999999998876 54 568888854321 12222344556666554 221 1 1355 5789999999999
Q ss_pred HHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHH
Q 005855 457 YAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREK 534 (673)
Q Consensus 457 y~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~ 534 (673)
|+.||++++||..||||++++|||||| .|+|+|+.+|..+.+ +.+|+++++ |++++|++|.++++.+. ++.+
T Consensus 297 l~~ad~~l~~s~~E~~g~~~lEAma~G----~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~-~~~~ 370 (392)
T cd03805 297 LSSARALLYTPSNEHFGIVPLEAMYAG----KPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLANDPD-LADR 370 (392)
T ss_pred HhhCeEEEECCCcCCCCchHHHHHHcC----CCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHhChH-HHHH
Confidence 999999999999999999999999995 899999999988888 457999987 99999999999998764 6777
Q ss_pred HHHHhhHHH-hhCCHHHHHHH
Q 005855 535 RHWHNFTHV-TTHTAQEWAET 554 (673)
Q Consensus 535 r~~~~~~~v-~~~~~~~W~~~ 554 (673)
+.+++++++ .+++++..+++
T Consensus 371 ~~~~a~~~~~~~~s~~~~~~~ 391 (392)
T cd03805 371 MGAAGRKRVKEKFSTEAFAER 391 (392)
T ss_pred HHHHHHHHHHHhcCHHHHhhh
Confidence 778888877 55777776654
No 40
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.90 E-value=2.2e-21 Score=208.91 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=193.8
Q ss_pred CCCEEEEeCccchhHHHHHHhhC---CCCeEEeEeccCCCchhhhhcCCc-chHHHHhhhcCCEEEEeCHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYN---SDMKVGWFLHTPFPSSEIHRTLPS-RSDLLRAVLAADLVGFHTYDYARHFVSAC 306 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~---~~~~Ig~flH~PfP~~e~fr~lp~-r~~il~~ll~aDlIgF~t~~~~~~Fl~~~ 306 (673)
..|+|++|++....++.++..+. .+.++.+.+|..-.. ....-+. +.-+...+..+|.|...+......+..
T Consensus 84 ~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~-- 159 (371)
T cd04962 84 KLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT--LVGQDPSFQPATRFSIEKSDGVTAVSESLRQETYE-- 159 (371)
T ss_pred CccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--cccccccchHHHHHHHhhCCEEEEcCHHHHHHHHH--
Confidence 45999999876555555544332 257888888853111 1011111 122334466899999998876655542
Q ss_pred HHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHHH
Q 005855 307 TRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKLL 383 (673)
Q Consensus 307 ~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L~ 383 (673)
.. +...++.++|+|+|...|.+... . ..++++ .++++++++||+.+.||+..+++
T Consensus 160 --~~------------~~~~~i~vi~n~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 160 --LF------------DITKEIEVIPNFVDEDRFRPKPD-----E---ALKRRLGAPEGEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred --hc------------CCcCCEEEecCCcCHhhcCCCch-----H---HHHHhcCCCCCCeEEEEecccccccCHHHHHH
Confidence 11 11236889999999887754211 1 122233 36789999999999999999999
Q ss_pred HHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEE
Q 005855 384 AFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVA 463 (673)
Q Consensus 384 Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~ 463 (673)
|++.+.++ ++ +.|+++|.+ ++...+ ++++.+.+. . ..|++ .|.. +++..+|+.||++
T Consensus 218 a~~~l~~~-~~----~~l~i~G~g-----~~~~~~----~~~~~~~~~----~--~~v~~-~g~~--~~~~~~~~~~d~~ 274 (371)
T cd04962 218 IFAKVRKE-VP----ARLLLVGDG-----PERSPA----ERLARELGL----Q--DDVLF-LGKQ--DHVEELLSIADLF 274 (371)
T ss_pred HHHHHHhc-CC----ceEEEEcCC-----cCHHHH----HHHHHHcCC----C--ceEEE-ecCc--ccHHHHHHhcCEE
Confidence 99988654 22 457777743 222233 333333221 1 13554 4543 5799999999999
Q ss_pred EEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhH
Q 005855 464 LVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFT 541 (673)
Q Consensus 464 vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~ 541 (673)
|+||..||||++++|||+|| .|+|+|+.+|..+.+ |.+|++++|.|++++|++|.++++++ +++.++.+++++
T Consensus 275 v~ps~~E~~~~~~~EAma~g----~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~ 349 (371)
T cd04962 275 LLPSEKESFGLAALEAMACG----VPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDD-ELWQEFSRAARN 349 (371)
T ss_pred EeCCCcCCCccHHHHHHHcC----CCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 99999999999999999995 899999999998888 56899999999999999999999854 467777777888
Q ss_pred H-HhhCCHHHHHHHHHHHHHH
Q 005855 542 H-VTTHTAQEWAETFVSELND 561 (673)
Q Consensus 542 ~-v~~~~~~~W~~~fl~~L~~ 561 (673)
. ...+++...++.+++.+++
T Consensus 350 ~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 350 RAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred HHHHhCCHHHHHHHHHHHHHh
Confidence 7 5678999888888776653
No 41
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.90 E-value=2e-21 Score=219.59 Aligned_cols=275 Identities=16% Similarity=0.096 Sum_probs=189.5
Q ss_pred cCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCC-chhhhhcCC-c---chHHHHhhhcCCEEEEeCHHHHHHHH
Q 005855 229 YKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFP-SSEIHRTLP-S---RSDLLRAVLAADLVGFHTYDYARHFV 303 (673)
Q Consensus 229 ~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP-~~e~fr~lp-~---r~~il~~ll~aDlIgF~t~~~~~~Fl 303 (673)
..++|+|+++-.+... +.++ +..+.+++..++|.-.- ....-...+ | -+..+..+-.+|.|...|....+...
T Consensus 209 ~~~~di~i~dr~~~~~-~~~~-~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~~l~ 286 (500)
T TIGR02918 209 LTKKDIIILDRSTGIG-QAVL-ENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQILK 286 (500)
T ss_pred CCCCCEEEEcCCcccc-hHHH-hcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHHHHH
Confidence 4567999887655443 3333 55678999999996421 100000000 1 12234445567888877765444332
Q ss_pred HHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHH
Q 005855 304 SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLL 383 (673)
Q Consensus 304 ~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~ 383 (673)
..... +.+...+|.++|+|++...+.+. ....+..|++||||.+.||+..+|+
T Consensus 287 ~~~~~------------~~~~~~ki~viP~g~~~~~~~~~---------------~~r~~~~il~vGrl~~~Kg~~~li~ 339 (500)
T TIGR02918 287 NQFKK------------YYNIEPRIYTIPVGSLDELQYPE---------------QERKPFSIITASRLAKEKHIDWLVK 339 (500)
T ss_pred HHhhh------------hcCCCCcEEEEcCCCcccccCcc---------------cccCCeEEEEEeccccccCHHHHHH
Confidence 21111 11224578899999876544321 0123467999999999999999999
Q ss_pred HHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEE
Q 005855 384 AFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVA 463 (673)
Q Consensus 384 Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~ 463 (673)
|+.++.++.|++ .|+++|. +++. +++++++.+.+. .+ .|. |.|.. ++..+|+.||++
T Consensus 340 A~~~l~~~~p~~----~l~i~G~-----G~~~----~~l~~~i~~~~l----~~--~V~-f~G~~---~~~~~~~~adv~ 396 (500)
T TIGR02918 340 AVVKAKKSVPEL----TFDIYGE-----GGEK----QKLQKIINENQA----QD--YIH-LKGHR---NLSEVYKDYELY 396 (500)
T ss_pred HHHHHHhhCCCe----EEEEEEC-----chhH----HHHHHHHHHcCC----CC--eEE-EcCCC---CHHHHHHhCCEE
Confidence 999999988864 5888873 3333 345555544321 11 244 46654 578899999999
Q ss_pred EEcCCCcCCChhHHHHHhhccCCCceEEEeCCC-Cchhhc--cCceEEECC----CC----HHHHHHHHHHHhcCCHHHH
Q 005855 464 LVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA-GAAQSL--GAGAILVNP----WN----ITEVANAIARALNMSPEER 532 (673)
Q Consensus 464 vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a-G~~~~l--g~~gllVnP----~D----~~~lA~aI~~aL~m~~~er 532 (673)
|+||.+||||++++|||||| .|+|+|+.. |..+.+ |.+|++|++ .| ++++|++|.++|+ ++++
T Consensus 397 v~pS~~Egfgl~~lEAma~G----~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~--~~~~ 470 (500)
T TIGR02918 397 LSASTSEGFGLTLMEAVGSG----LGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN--SNDI 470 (500)
T ss_pred EEcCccccccHHHHHHHHhC----CCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC--hHHH
Confidence 99999999999999999995 899999986 677777 789999984 33 8999999999994 3467
Q ss_pred HHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 533 EKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 533 ~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
.++.+++++.++++++..-++++.+.+++
T Consensus 471 ~~~~~~a~~~a~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 471 DAFHEYSYQIAEGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 77888889999999988888888766653
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.90 E-value=1e-21 Score=227.88 Aligned_cols=279 Identities=14% Similarity=0.081 Sum_probs=182.1
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEe-EeccCCCc---hhhhhcCCcchHHHHhhhcCCEEEEe--CHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGW-FLHTPFPS---SEIHRTLPSRSDLLRAVLAADLVGFH--TYDYARHFVS 304 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~-flH~PfP~---~e~fr~lp~r~~il~~ll~aDlIgF~--t~~~~~~Fl~ 304 (673)
..|+||+|++.-..+..+..... ++++.+ .+|+ +|. .+.++. ....+...+..++.+.+. +....+.+..
T Consensus 400 kpDIVH~h~~~a~~lg~lAa~~~-gvPvIv~t~h~-~~~~~~~~~~~~--~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~ 475 (694)
T PRK15179 400 VPSVVHIWQDGSIFACALAALLA-GVPRIVLSVRT-MPPVDRPDRYRV--EYDIIYSELLKMRGVALSSNSQFAAHRYAD 475 (694)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHc-CCCEEEEEeCC-CccccchhHHHH--HHHHHHHHHHhcCCeEEEeCcHHHHHHHHH
Confidence 35999999998877766665543 455443 4564 221 121110 001122223333333222 2222222221
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhc-CCceEEEeecccccCChHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLL 383 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~-~~~iIl~VgRLd~~KGi~~~L~ 383 (673)
.++ ....++.++|||||++.|.+. +........++.... +.++|++|||+++.||+..+|+
T Consensus 476 ----~~g-----------~~~~kI~VI~NGVd~~~f~~~---~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~ 537 (694)
T PRK15179 476 ----WLG-----------VDERRIPVVYNGLAPLKSVQD---DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVE 537 (694)
T ss_pred ----HcC-----------CChhHEEEECCCcCHHhcCCC---chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHH
Confidence 112 124578999999999888642 111111112222222 4668999999999999999999
Q ss_pred HHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEE
Q 005855 384 AFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVA 463 (673)
Q Consensus 384 Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~ 463 (673)
|+.++++++|++ .|+++|. ++. ++++++++.+.+- ...++|.|.. +++..+|+.|||+
T Consensus 538 A~a~l~~~~p~~----~LvIvG~-----G~~----~~~L~~l~~~lgL-------~~~V~flG~~--~dv~~ll~aaDv~ 595 (694)
T PRK15179 538 AAQRFAASHPKV----RFIMVGG-----GPL----LESVREFAQRLGM-------GERILFTGLS--RRVGYWLTQFNAF 595 (694)
T ss_pred HHHHHHHHCcCe----EEEEEcc-----Ccc----hHHHHHHHHHcCC-------CCcEEEcCCc--chHHHHHHhcCEE
Confidence 999999988865 4888874 232 2345555554332 1233456765 4789999999999
Q ss_pred EEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCH--HHHHHHHHHHhcCCHHHHHHHHHHh
Q 005855 464 LVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNI--TEVANAIARALNMSPEEREKRHWHN 539 (673)
Q Consensus 464 vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~--~~lA~aI~~aL~m~~~er~~r~~~~ 539 (673)
|+||.+||||++++|||||+ .|+|+|..+|..+.+ |.+|++|+|.|. ++++++|.+++.... ....+.+++
T Consensus 596 VlpS~~Egfp~vlLEAMA~G----~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~-~~~~l~~~a 670 (694)
T PRK15179 596 LLLSRFEGLPNVLIEAQFSG----VPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCA-ADPGIARKA 670 (694)
T ss_pred EeccccccchHHHHHHHHcC----CeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChh-ccHHHHHHH
Confidence 99999999999999999995 899999999999888 568999998875 689999999887543 223444567
Q ss_pred hHHH-hhCCHHHHHHHHHHH
Q 005855 540 FTHV-TTHTAQEWAETFVSE 558 (673)
Q Consensus 540 ~~~v-~~~~~~~W~~~fl~~ 558 (673)
++++ ++|++..-++++++.
T Consensus 671 r~~a~~~FS~~~~~~~~~~l 690 (694)
T PRK15179 671 ADWASARFSLNQMIASTVRC 690 (694)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 7776 478888777777654
No 43
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.90 E-value=2e-21 Score=214.29 Aligned_cols=285 Identities=14% Similarity=0.110 Sum_probs=197.6
Q ss_pred CCCCEEEEeCccchhH--HHHHHhhCCCCeEEeEeccCCCchhhhhc-C--Ccch----HHH-HhhhcCCEEEEeCHHHH
Q 005855 230 KDGDVVWCHDYHLMFL--PKCLKEYNSDMKVGWFLHTPFPSSEIHRT-L--PSRS----DLL-RAVLAADLVGFHTYDYA 299 (673)
Q Consensus 230 ~~~DvVwvHDyhl~ll--p~~Lr~~~~~~~Ig~flH~PfP~~e~fr~-l--p~r~----~il-~~ll~aDlIgF~t~~~~ 299 (673)
.+.|+||+|...++.. ...+++ ..+.++.+..|--+|..-.-.. . +... .+. ..+..+|.|...+....
T Consensus 105 ~~~Div~~~~p~~~~~~~~~~~~~-~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~ 183 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGARLLAR-LSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISRSMM 183 (412)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHH-hhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCHHHH
Confidence 3569999998665432 223333 3446777767755543211000 0 0000 111 12446899988887666
Q ss_pred HHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccC
Q 005855 300 RHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIK 376 (673)
Q Consensus 300 ~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~K 376 (673)
+.+.. .+ ....++.++|+|||.+.|.+... + ....+++++ .++++|+++||+.+.|
T Consensus 184 ~~~~~-----~~-----------~~~~~i~vi~ngvd~~~~~~~~~-~----~~~~~~~~~~~~~~~~~i~~~G~l~~~k 242 (412)
T PRK10307 184 NKARE-----KG-----------VAAEKVIFFPNWSEVARFQPVAD-A----DVDALRAQLGLPDGKKIVLYSGNIGEKQ 242 (412)
T ss_pred HHHHH-----cC-----------CCcccEEEECCCcCHhhcCCCCc-c----chHHHHHHcCCCCCCEEEEEcCcccccc
Confidence 55432 12 12457889999999998875321 1 112344444 3568999999999999
Q ss_pred ChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHH
Q 005855 377 GIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCAL 456 (673)
Q Consensus 377 Gi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~al 456 (673)
|+..+++|++++ +++|+ +.|+++|. ++.. +++++++.+.+. ..|+ |.|.++.+++..+
T Consensus 243 g~~~li~a~~~l-~~~~~----~~l~ivG~-----g~~~----~~l~~~~~~~~l-------~~v~-f~G~~~~~~~~~~ 300 (412)
T PRK10307 243 GLELVIDAARRL-RDRPD----LIFVICGQ-----GGGK----ARLEKMAQCRGL-------PNVH-FLPLQPYDRLPAL 300 (412)
T ss_pred CHHHHHHHHHHh-ccCCC----eEEEEECC-----ChhH----HHHHHHHHHcCC-------CceE-EeCCCCHHHHHHH
Confidence 999999999876 44454 56888873 3333 334444443321 2365 4688999999999
Q ss_pred HHHcCEEEEcCCCcCCC----hhHHHHHhhccCCCceEEEeCCCCc--hhhccCceEEECCCCHHHHHHHHHHHhcCCHH
Q 005855 457 YAVTDVALVTSLRDGMN----LVSYEFVACQDLKKGVLILSEFAGA--AQSLGAGAILVNPWNITEVANAIARALNMSPE 530 (673)
Q Consensus 457 y~~ADv~vv~Sl~EGf~----Lv~lEamA~~~~~~g~lVlSe~aG~--~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~ 530 (673)
|+.||++++||..|+++ ...+|||||| .|+|+|..+|. .+.+..+|++|+|.|++++|++|.++++++ +
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G----~PVi~s~~~g~~~~~~i~~~G~~~~~~d~~~la~~i~~l~~~~-~ 375 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASG----RNVVATAEPGTELGQLVEGIGVCVEPESVEALVAAIAALARQA-L 375 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcC----CCEEEEeCCCchHHHHHhCCcEEeCCCCHHHHHHHHHHHHhCH-H
Confidence 99999999999999954 4579999995 89999988774 355556899999999999999999999865 5
Q ss_pred HHHHHHHHhhHHHh-hCCHHHHHHHHHHHHHHhH
Q 005855 531 EREKRHWHNFTHVT-THTAQEWAETFVSELNDTV 563 (673)
Q Consensus 531 er~~r~~~~~~~v~-~~~~~~W~~~fl~~L~~~~ 563 (673)
++..+.+++++++. ++++...+++|++.+++..
T Consensus 376 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 77788888898885 6899999999998888654
No 44
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.90 E-value=1.7e-21 Score=207.92 Aligned_cols=266 Identities=20% Similarity=0.214 Sum_probs=191.3
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|..+...+..++.+ ..+.++.+.+|-.++....+ . ..+..+|.+.+.+......+. ...
T Consensus 78 ~~dii~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~------~---~~~~~~~~vi~~s~~~~~~~~----~~~ 143 (355)
T cd03819 78 KVDIVHARSRAPAWSAYLAAR-RTRPPFVTTVHGFYSVNFRY------N---AIMARGDRVIAVSNFIADHIR----ENY 143 (355)
T ss_pred CCCEEEECCCchhHHHHHHHH-hcCCCEEEEeCCchhhHHHH------H---HHHHhcCEEEEeCHHHHHHHH----Hhc
Confidence 459999998776555444443 34688999999766533211 1 224468988887765544432 222
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKLLAFEK 387 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L~Af~~ 387 (673)
+. ...++.++|+|||.+.|.+..... .....+++++ .++++|+++||+.+.||+..+++|+..
T Consensus 144 ~~-----------~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~ 209 (355)
T cd03819 144 GV-----------DPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALAR 209 (355)
T ss_pred CC-----------ChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHH
Confidence 21 135788999999998886543221 1222244443 367789999999999999999999999
Q ss_pred HHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcC
Q 005855 388 FLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTS 467 (673)
Q Consensus 388 ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~S 467 (673)
+.++.++ +.|+++|... ....+.+.+.+.+.+.+. . ..|.+ .|. .+++..+|+.||++++||
T Consensus 210 l~~~~~~----~~l~ivG~~~-----~~~~~~~~~~~~~~~~~~----~--~~v~~-~g~--~~~~~~~l~~ad~~i~ps 271 (355)
T cd03819 210 LKKDDPD----VHLLIVGDAQ-----GRRFYYAELLELIKRLGL----Q--DRVTF-VGH--CSDMPAAYALADIVVSAS 271 (355)
T ss_pred HHhcCCC----eEEEEEECCc-----ccchHHHHHHHHHHHcCC----c--ceEEE-cCC--cccHHHHHHhCCEEEecC
Confidence 9877554 5588888533 112334444444443221 1 12554 555 678999999999999999
Q ss_pred -CCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHh
Q 005855 468 -LRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVT 544 (673)
Q Consensus 468 -l~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~ 544 (673)
..||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|..++...++++.++.+++++.++
T Consensus 272 ~~~e~~~~~l~EA~a~G----~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 272 TEPEAFGRTAVEAQAMG----RPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CCCCCCchHHHHHHhcC----CCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 7899999999999995 899999999988877 357999999999999999998888788899998999998886
Q ss_pred hC
Q 005855 545 TH 546 (673)
Q Consensus 545 ~~ 546 (673)
++
T Consensus 348 ~~ 349 (355)
T cd03819 348 TL 349 (355)
T ss_pred Hh
Confidence 54
No 45
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.89 E-value=1e-21 Score=209.88 Aligned_cols=252 Identities=18% Similarity=0.071 Sum_probs=173.1
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHH-HHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDL-LRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~i-l~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
+.|+|++|..+...++.++........+.+..|..+...+.+........+ ...+..+|.+...+....+.+...
T Consensus 80 ~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~---- 155 (358)
T cd03812 80 KYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK---- 155 (358)
T ss_pred CCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC----
Confidence 569999999887777777666655556677778765443322211100001 112345677766665444433210
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKLLAFE 386 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L~Af~ 386 (673)
....++.++|+|||.+.|..... ..+. ++.+ .++++|+++||+.+.||+..+++|+.
T Consensus 156 -------------~~~~~~~vi~ngvd~~~~~~~~~---~~~~----~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~ 215 (358)
T cd03812 156 -------------VKNKKFKVIPNGIDLEKFIFNEE---IRKK----RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFA 215 (358)
T ss_pred -------------CCcccEEEEeccCcHHHcCCCch---hhhH----HHHcCCCCCCEEEEEEeccccccChHHHHHHHH
Confidence 11357889999999988765321 1111 1222 46789999999999999999999999
Q ss_pred HHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEc
Q 005855 387 KFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVT 466 (673)
Q Consensus 387 ~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~ 466 (673)
.+.+++|++ .|+++|. ++..+.+++ .+.+.+ .. ..|++ .|. .+++..+|+.||++|+|
T Consensus 216 ~l~~~~~~~----~l~ivG~-----g~~~~~~~~----~~~~~~----~~--~~v~~-~g~--~~~~~~~~~~adi~v~p 273 (358)
T cd03812 216 ELLKKNPNA----KLLLVGD-----GELEEEIKK----KVKELG----LE--DKVIF-LGV--RNDVPELLQAMDVFLFP 273 (358)
T ss_pred HHHHhCCCe----EEEEEeC-----CchHHHHHH----HHHhcC----CC--CcEEE-ecc--cCCHHHHHHhcCEEEec
Confidence 999888764 5888873 233333333 333322 11 13554 555 67899999999999999
Q ss_pred CCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccC-ceEEECCCCHHHHHHHHHHHhcCCHHHH
Q 005855 467 SLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGA-GAILVNPWNITEVANAIARALNMSPEER 532 (673)
Q Consensus 467 Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~-~gllVnP~D~~~lA~aI~~aL~m~~~er 532 (673)
|..||||++++|||||| .|+|+|+.+|..+.++. ++++..+.+++++|++|.++++++...+
T Consensus 274 s~~E~~~~~~lEAma~G----~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~ 336 (358)
T cd03812 274 SLYEGLPLVLIEAQASG----LPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRER 336 (358)
T ss_pred ccccCCCHHHHHHHHhC----CCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhh
Confidence 99999999999999995 99999999999988843 4556666678999999999999886443
No 46
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.89 E-value=1.4e-21 Score=207.46 Aligned_cols=276 Identities=20% Similarity=0.203 Sum_probs=200.6
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCch--hhhhc---CCcchHHHHhhhcCCEEEEeCHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSS--EIHRT---LPSRSDLLRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~--e~fr~---lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
...|+||+|++..... +..+.++.+.+|-.+|.. ..+.. ...+......+..+|.+.+.+...+..+..
T Consensus 84 ~~~Dii~~~~~~~~~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~ 157 (365)
T cd03809 84 LGLDLLHSPHNTAPLL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLR 157 (365)
T ss_pred cCCCeeeecccccCcc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHH
Confidence 4569999998877765 456788999999654421 11110 011233445567899999888766555543
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLA 384 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~A 384 (673)
..+. ...++.++|+|+|...+..... .. ........++++|+++||+.+.||+..+++|
T Consensus 158 ----~~~~-----------~~~~~~vi~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~ 216 (365)
T cd03809 158 ----YLGV-----------PPDKIVVIPLGVDPRFRPPPAE-----AE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEA 216 (365)
T ss_pred ----HhCc-----------CHHHEEeeccccCccccCCCch-----HH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHH
Confidence 1111 2347889999999887754311 11 1111223578899999999999999999999
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVAL 464 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~v 464 (673)
+..+.+.+|+ +.|+++|.... .+......++ +. + ....+.+.|.++.+++..+|+.||+++
T Consensus 217 ~~~~~~~~~~----~~l~i~G~~~~----~~~~~~~~~~----~~----~---~~~~v~~~g~~~~~~~~~~~~~~d~~l 277 (365)
T cd03809 217 FARLPAKGPD----PKLVIVGKRGW----LNEELLARLR----EL----G---LGDRVRFLGYVSDEELAALYRGARAFV 277 (365)
T ss_pred HHHHHHhcCC----CCEEEecCCcc----ccHHHHHHHH----Hc----C---CCCeEEECCCCChhHHHHHHhhhhhhc
Confidence 9999888764 45777774321 1112222221 11 1 113344679999999999999999999
Q ss_pred EcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHh
Q 005855 465 VTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVT 544 (673)
Q Consensus 465 v~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~ 544 (673)
+||..||||++++|||+|| .|+|+|+.+|..+.++.+|+++++.|.++++++|.++++. ++.+..+.+++++.+.
T Consensus 278 ~ps~~e~~~~~~~Ea~a~G----~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~ 352 (365)
T cd03809 278 FPSLYEGFGLPVLEAMACG----TPVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLLED-PALREELRERGLARAK 352 (365)
T ss_pred ccchhccCCCCHHHHhcCC----CcEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 9999999999999999995 8999999988888778899999999999999999999875 4577777788888899
Q ss_pred hCCHHHHHHHHH
Q 005855 545 THTAQEWAETFV 556 (673)
Q Consensus 545 ~~~~~~W~~~fl 556 (673)
+++++.++++++
T Consensus 353 ~~sw~~~~~~~~ 364 (365)
T cd03809 353 RFSWEKTARRTL 364 (365)
T ss_pred hCCHHHHHHHHh
Confidence 999999998875
No 47
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.89 E-value=1.2e-20 Score=208.46 Aligned_cols=272 Identities=14% Similarity=0.098 Sum_probs=192.3
Q ss_pred CCCEEEEeCccch-hHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHH-hhhcCCEEEEeCHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLM-FLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLR-AVLAADLVGFHTYDYARHFVSACTR 308 (673)
Q Consensus 231 ~~DvVwvHDyhl~-llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~-~ll~aDlIgF~t~~~~~~Fl~~~~r 308 (673)
+.|+++.|-++.. ....+++++....++....|......+.+ .+....+.+ .+..+|.|.+.+......+.+
T Consensus 127 ~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~~~~--~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~---- 200 (407)
T cd04946 127 QGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYEDRY--PSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK---- 200 (407)
T ss_pred CceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhhhhc--cccchHHHHHHHhcCCEEEECCHHHHHHHHH----
Confidence 4577777654443 33345666666566888888532111111 011111222 245789999988766554422
Q ss_pred HhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHH
Q 005855 309 ILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKF 388 (673)
Q Consensus 309 ~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~l 388 (673)
.++ ....++.++|+|+|...+.+.. ...++..|+++||+.+.||+..+++|+.++
T Consensus 201 ~~~-----------~~~~ki~vi~~gv~~~~~~~~~--------------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l 255 (407)
T cd04946 201 RYP-----------AYKEKIKVSYLGVSDPGIISKP--------------SKDDTLRIVSCSYLVPVKRVDLIIKALAAL 255 (407)
T ss_pred HCC-----------CccccEEEEECCcccccccCCC--------------CCCCCEEEEEeeccccccCHHHHHHHHHHH
Confidence 222 1235778999999987664320 013567899999999999999999999999
Q ss_pred HHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH--cCEEEEc
Q 005855 389 LEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV--TDVALVT 466 (673)
Q Consensus 389 l~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~--ADv~vv~ 466 (673)
.+.+|+. ++.++++|. +++... +++++.+.+ .. ..|+ +.|.++.+++.++|+. ||+++.|
T Consensus 256 ~~~~p~~--~l~~~iiG~-----g~~~~~----l~~~~~~~~----~~--~~V~-f~G~v~~~e~~~~~~~~~~~v~v~~ 317 (407)
T cd04946 256 AKARPSI--KIKWTHIGG-----GPLEDT----LKELAESKP----EN--ISVN-FTGELSNSEVYKLYKENPVDVFVNL 317 (407)
T ss_pred HHhCCCc--eEEEEEEeC-----chHHHH----HHHHHHhcC----CC--ceEE-EecCCChHHHHHHHhhcCCCEEEeC
Confidence 9988875 467777763 333333 344433211 10 1244 5799999999999986 7899999
Q ss_pred CCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCC-CHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH
Q 005855 467 SLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPW-NITEVANAIARALNMSPEEREKRHWHNFTHV 543 (673)
Q Consensus 467 Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~-D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v 543 (673)
|..|||+++++|||||| .|+|+|..+|..+.+ |.+|++++|. |++++|++|.++++. ++++.++.+++++.+
T Consensus 318 S~~Eg~p~~llEAma~G----~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~-~~~~~~m~~~ar~~~ 392 (407)
T cd04946 318 SESEGLPVSIMEAMSFG----IPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN-EEEYQTMREKAREKW 392 (407)
T ss_pred CccccccHHHHHHHHcC----CCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 99999999999999995 899999999999988 4478999874 899999999999985 457888888888888
Q ss_pred -hhCCHHHHHHHHH
Q 005855 544 -TTHTAQEWAETFV 556 (673)
Q Consensus 544 -~~~~~~~W~~~fl 556 (673)
+++++..+.++|+
T Consensus 393 ~~~f~~~~~~~~~~ 406 (407)
T cd04946 393 EENFNASKNYREFA 406 (407)
T ss_pred HHHcCHHHhHHHhc
Confidence 5788888888775
No 48
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.89 E-value=5.9e-21 Score=201.82 Aligned_cols=278 Identities=17% Similarity=0.189 Sum_probs=187.0
Q ss_pred cCCCCEEEEeCccc-hhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchH------HHHhhhcCCEEEEeCHHHHHH
Q 005855 229 YKDGDVVWCHDYHL-MFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSD------LLRAVLAADLVGFHTYDYARH 301 (673)
Q Consensus 229 ~~~~DvVwvHDyhl-~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~------il~~ll~aDlIgF~t~~~~~~ 301 (673)
....|+|++|+... ...+.....+..+.++.+..|..++....... +.... ....+..+|.+.+.+......
T Consensus 85 ~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~ 163 (375)
T cd03821 85 IREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHK-ALKKRLAWFLFERRLLQAAAAVHATSEQEAAE 163 (375)
T ss_pred CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccc-hhhhHHHHHHHHHHHHhcCCEEEECCHHHHHH
Confidence 34679999998432 22222222223467888888876654321000 01110 012234567777666433322
Q ss_pred HHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCCh
Q 005855 302 FVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGI 378 (673)
Q Consensus 302 Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi 378 (673)
... .+...++.++|+|+|.+.|.+.... . . ++.+ .++++|+++||+++.||+
T Consensus 164 ~~~-----------------~~~~~~~~vi~~~~~~~~~~~~~~~---~-~----~~~~~~~~~~~~i~~~G~~~~~K~~ 218 (375)
T cd03821 164 IRR-----------------LGLKAPIAVIPNGVDIPPFAALPSR---G-R----RRKFPILPDKRIILFLGRLHPKKGL 218 (375)
T ss_pred HHh-----------------hCCcccEEEcCCCcChhccCcchhh---h-h----hhhccCCCCCcEEEEEeCcchhcCH
Confidence 210 1123578899999999888643210 0 0 2222 467899999999999999
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 458 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~ 458 (673)
..+++|+.++.+++|++ .|+++|... ..+. ..++.++.+.+ .. ..|+ +.|.++.+++..+|+
T Consensus 219 ~~li~a~~~l~~~~~~~----~l~i~G~~~----~~~~---~~~~~~~~~~~----~~--~~v~-~~g~~~~~~~~~~~~ 280 (375)
T cd03821 219 DLLIEAFAKLAERFPDW----HLVIAGPDE----GGYR---AELKQIAAALG----LE--DRVT-FTGMLYGEDKAAALA 280 (375)
T ss_pred HHHHHHHHHhhhhcCCe----EEEEECCCC----cchH---HHHHHHHHhcC----cc--ceEE-EcCCCChHHHHHHHh
Confidence 99999999999887764 588777422 1221 22223322222 11 1244 579999999999999
Q ss_pred HcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhcc-CceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 005855 459 VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLG-AGAILVNPWNITEVANAIARALNMSPEEREKRHW 537 (673)
Q Consensus 459 ~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg-~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~ 537 (673)
.||++++||..||||++++|||+|| .|+|+|+.+|..+.+. ..|++++ .|.++++++|.++++++ +++..+.+
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G----~PvI~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~-~~~~~~~~ 354 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACG----TPVVTTDKVPWQELIEYGCGWVVD-DDVDALAAALRRALELP-QRLKAMGE 354 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcC----CCEEEcCCCCHHHHhhcCceEEeC-CChHHHHHHHHHHHhCH-HHHHHHHH
Confidence 9999999999999999999999995 8999999999888883 3455554 56699999999999987 57778888
Q ss_pred HhhHH-HhhCCHHHHHHHHH
Q 005855 538 HNFTH-VTTHTAQEWAETFV 556 (673)
Q Consensus 538 ~~~~~-v~~~~~~~W~~~fl 556 (673)
++++. .++++++.-+++++
T Consensus 355 ~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 355 NGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHhcCHHHHHHHhh
Confidence 88888 57788887777664
No 49
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.88 E-value=7.9e-21 Score=201.86 Aligned_cols=280 Identities=20% Similarity=0.159 Sum_probs=193.0
Q ss_pred CCCEEEEeCccch----hHHHHHH-hhCCCCeEEeEeccCCCchhhhhcCCcchHH-HHhhhcCCEEEEeCHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLM----FLPKCLK-EYNSDMKVGWFLHTPFPSSEIHRTLPSRSDL-LRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 231 ~~DvVwvHDyhl~----llp~~Lr-~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~i-l~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
..|+|++|+++-. ......+ ....+.++.+.+|...+.... .....+ ...+..+|.|.+.+.+..+.+..
T Consensus 76 ~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 151 (366)
T cd03822 76 GPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPR----PGDRALLRLLLRRADAVIVMSSELLRALLL 151 (366)
T ss_pred CCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccc----hhhhHHHHHHHhcCCEEEEeeHHHHHHHHh
Confidence 4599999873321 1111111 123678999999986222111 111112 22345799999987444444432
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLA 384 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~A 384 (673)
. ....++.++|+|+|...+..... . +. .....++++|+++||+.+.||+..+++|
T Consensus 152 ~-----------------~~~~~~~~i~~~~~~~~~~~~~~------~-~~-~~~~~~~~~i~~~G~~~~~K~~~~ll~a 206 (366)
T cd03822 152 R-----------------AYPEKIAVIPHGVPDPPAEPPES------L-KA-LGGLDGRPVLLTFGLLRPYKGLELLLEA 206 (366)
T ss_pred h-----------------cCCCcEEEeCCCCcCcccCCchh------h-Hh-hcCCCCCeEEEEEeeccCCCCHHHHHHH
Confidence 0 00347889999999877653211 1 11 1112467899999999999999999999
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVAL 464 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~v 464 (673)
++.+.+++|+ +.|+++|.... +.........+++.+.+ .. ..|.++.+.++.+++..+|+.||+++
T Consensus 207 ~~~~~~~~~~----~~l~i~G~~~~----~~~~~~~~~~~~i~~~~----~~--~~v~~~~~~~~~~~~~~~~~~ad~~v 272 (366)
T cd03822 207 LPLLVAKHPD----VRLLVAGETHP----DLERYRGEAYALAERLG----LA--DRVIFINRYLPDEELPELFSAADVVV 272 (366)
T ss_pred HHHHHhhCCC----eEEEEeccCcc----chhhhhhhhHhHHHhcC----CC--CcEEEecCcCCHHHHHHHHhhcCEEE
Confidence 9999888775 45887874321 11111111002222222 11 13665555599999999999999999
Q ss_pred EcCCCc--CCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005855 465 VTSLRD--GMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNF 540 (673)
Q Consensus 465 v~Sl~E--Gf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~ 540 (673)
+||..| |++++++|||||| .|+|+|+.+| .+++ +.+|+++++.|++++|++|.++++.+ +++.++.++++
T Consensus 273 ~ps~~e~~~~~~~~~Ea~a~G----~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~-~~~~~~~~~~~ 346 (366)
T cd03822 273 LPYRSADQTQSGVLAYAIGFG----KPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLADP-ELAQALRARAR 346 (366)
T ss_pred ecccccccccchHHHHHHHcC----CCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcCh-HHHHHHHHHHH
Confidence 999999 9999999999995 8999999888 6666 56899999999999999999999865 46677788889
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 005855 541 THVTTHTAQEWAETFVSEL 559 (673)
Q Consensus 541 ~~v~~~~~~~W~~~fl~~L 559 (673)
+++++++++.+++++.+.+
T Consensus 347 ~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 347 EYARAMSWERVAERYLRLL 365 (366)
T ss_pred HHHhhCCHHHHHHHHHHHh
Confidence 9998899999999887754
No 50
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.88 E-value=4.5e-21 Score=207.58 Aligned_cols=268 Identities=19% Similarity=0.142 Sum_probs=186.6
Q ss_pred cCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCC-CchhhhhcCCc---chHHHHhhhcCCEEEEeCHHHHHHHHH
Q 005855 229 YKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPF-PSSEIHRTLPS---RSDLLRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 229 ~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~Pf-P~~e~fr~lp~---r~~il~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
.++.|+|++|..+.... .+.......+...++|... .....-...++ .+.++..+..+|.|.+.+....+.+..
T Consensus 97 ~~~~diii~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l~~ 174 (372)
T cd04949 97 DTKPDVFILDRPTLDGQ--ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDLQK 174 (372)
T ss_pred CCCCCEEEECCccccch--hHHhccCCceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHHHH
Confidence 36779999988776655 2223334455666677532 11110001111 234555567889999888766555532
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLA 384 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~A 384 (673)
.++ ...++.++|+|+|...+.+.. .....+..|+++||+.+.||+..+|+|
T Consensus 175 ----~~~------------~~~~v~~ip~g~~~~~~~~~~-------------~~~~~~~~i~~vgrl~~~K~~~~li~a 225 (372)
T cd04949 175 ----QFG------------NYNPIYTIPVGSIDPLKLPAQ-------------FKQRKPHKIITVARLAPEKQLDQLIKA 225 (372)
T ss_pred ----HhC------------CCCceEEEcccccChhhcccc-------------hhhcCCCeEEEEEccCcccCHHHHHHH
Confidence 111 112378999999988765421 011356789999999999999999999
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVAL 464 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~v 464 (673)
+.++.+++|++ .|+++|.+. +...+. +++.+.+. .+ .|. +.|. .+++..+|+.||++|
T Consensus 226 ~~~l~~~~~~~----~l~i~G~g~-----~~~~~~----~~~~~~~~----~~--~v~-~~g~--~~~~~~~~~~ad~~v 283 (372)
T cd04949 226 FAKVVKQVPDA----TLDIYGYGD-----EEEKLK----ELIEELGL----ED--YVF-LKGY--TRDLDEVYQKAQLSL 283 (372)
T ss_pred HHHHHHhCCCc----EEEEEEeCc-----hHHHHH----HHHHHcCC----cc--eEE-EcCC--CCCHHHHHhhhhEEE
Confidence 99999998875 477777432 222333 33322221 11 244 4563 467999999999999
Q ss_pred EcCCCcCCChhHHHHHhhccCCCceEEEeCCC-Cchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhH
Q 005855 465 VTSLRDGMNLVSYEFVACQDLKKGVLILSEFA-GAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFT 541 (673)
Q Consensus 465 v~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a-G~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~ 541 (673)
+||..||||++++|||+|| .|+|+|+.+ |..+.+ |.+|++++|.|++++|++|..+++.+ +.+.++.+++++
T Consensus 284 ~~S~~Eg~~~~~lEAma~G----~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~-~~~~~~~~~a~~ 358 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHG----LPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDP-KLLQKFSEAAYE 358 (372)
T ss_pred ecccccccChHHHHHHhCC----CCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 9999999999999999995 899999877 677777 67899999999999999999999876 467777788888
Q ss_pred HHhhCCHHHHHHH
Q 005855 542 HVTTHTAQEWAET 554 (673)
Q Consensus 542 ~v~~~~~~~W~~~ 554 (673)
...++++..++++
T Consensus 359 ~~~~~s~~~~~~~ 371 (372)
T cd04949 359 NAERYSEENVWEK 371 (372)
T ss_pred HHHHhhHHHHHhc
Confidence 8888877776653
No 51
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.88 E-value=1.2e-20 Score=200.70 Aligned_cols=266 Identities=19% Similarity=0.164 Sum_probs=192.8
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|..+...+..++..+....+..+.+|.+..... +........+..+|.+...+....+.+.+ ..
T Consensus 79 ~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~vi~~s~~~~~~l~~----~~ 149 (355)
T cd03799 79 GIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRS-----PDAIDLDEKLARADFVVAISEYNRQQLIR----LL 149 (355)
T ss_pred CCCEEEECCCCchHHHHHHHHHhcCCCEEEEEeccccccc-----CchHHHHHHHhhCCEEEECCHHHHHHHHH----hc
Confidence 4599999987666656666665557888888885421111 01123334456799999988776655432 11
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~ 390 (673)
+ ....++.++|+|+|.+.|.+.. .....++..|+++||+.+.||+..+++|++.+.+
T Consensus 150 ~-----------~~~~~~~vi~~~~d~~~~~~~~------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~ 206 (355)
T cd03799 150 G-----------CDPDKIHVVHCGVDLERFPPRP------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD 206 (355)
T ss_pred C-----------CCcccEEEEeCCcCHHHcCCcc------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh
Confidence 1 1245788999999998876431 0112456789999999999999999999999877
Q ss_pred hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCC-
Q 005855 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLR- 469 (673)
Q Consensus 391 ~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~- 469 (673)
..|+ +.|+++|.. +.. .++.+.+.+.+. .+.+.+.|.++.+++.++|+.||++++||..
T Consensus 207 ~~~~----~~l~i~G~~-----~~~----~~~~~~~~~~~~-------~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~ 266 (355)
T cd03799 207 RGID----FRLDIVGDG-----PLR----DELEALIAELGL-------EDRVTLLGAKSQEEVRELLRAADLFVLPSVTA 266 (355)
T ss_pred cCCC----eEEEEEECC-----ccH----HHHHHHHHHcCC-------CCeEEECCcCChHHHHHHHHhCCEEEecceec
Confidence 6554 568878742 222 233334433321 1234468999999999999999999999999
Q ss_pred -----cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHH
Q 005855 470 -----DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTH 542 (673)
Q Consensus 470 -----EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~ 542 (673)
||||++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|++++|++|.++++++. ++..+.+++++.
T Consensus 267 ~~~~~e~~~~~~~Ea~a~G----~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~a~~~ 341 (355)
T cd03799 267 ADGDREGLPVVLMEAMAMG----LPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPE-LRREMGEAGRAR 341 (355)
T ss_pred CCCCccCccHHHHHHHHcC----CCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHH
Confidence 99999999999995 899999988887777 347999999999999999999998764 567777777877
Q ss_pred Hh-hCCHHHHHH
Q 005855 543 VT-THTAQEWAE 553 (673)
Q Consensus 543 v~-~~~~~~W~~ 553 (673)
+. .|++...++
T Consensus 342 ~~~~~s~~~~~~ 353 (355)
T cd03799 342 VEEEFDIRKQAA 353 (355)
T ss_pred HHHhcCHHHHhh
Confidence 74 566665544
No 52
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.88 E-value=2.3e-20 Score=208.63 Aligned_cols=306 Identities=13% Similarity=0.106 Sum_probs=189.9
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc-hHH-----------------------HH--
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR-SDL-----------------------LR-- 283 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r-~~i-----------------------l~-- 283 (673)
.+.|++|.|||+......+||+..++++.+|+.|-. ++-|.+-.. ..+ ++
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT----~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~ 222 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHAT----LLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERA 222 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEeccc----ccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHH
Confidence 467999999999999999999888999999999943 333421110 000 01
Q ss_pred hhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCC----hhHHHHHH----
Q 005855 284 AVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEIN----PVQVHIKE---- 355 (673)
Q Consensus 284 ~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~----~~~~~~~~---- 355 (673)
....||.+.-.+...++ -|.. +.+++..+ |+|||||++.|.+..... ..++++..
T Consensus 223 aa~~Ad~fttVS~it~~----E~~~------------Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~ 285 (590)
T cd03793 223 AAHCAHVFTTVSEITAY----EAEH------------LLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRG 285 (590)
T ss_pred HHhhCCEEEECChHHHH----HHHH------------HhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHH
Confidence 12233333322221111 1122 23333333 999999999987643110 01111111
Q ss_pred -HHHHh---cCCceEEE-eecccc-cCChHHHHHHHHHHHHhCcCcc-CceEEEEEEcCCCCCh---------HHHHHHH
Q 005855 356 -LQETF---AGRKVMLG-VDRLDM-IKGIPQKLLAFEKFLEENSDWR-GKVVLLQIAVPTRTDV---------PEYQRLT 419 (673)
Q Consensus 356 -lr~~~---~~~~iIl~-VgRLd~-~KGi~~~L~Af~~ll~~~P~~~-~~v~Lvqvg~psr~~~---------~ey~~l~ 419 (673)
++.++ .+++++++ +||+++ .||++.+|+|+.++-..-..-. +..++..+..|+.+.. .-.++|+
T Consensus 286 ~~~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~ 365 (590)
T cd03793 286 HFYGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLR 365 (590)
T ss_pred HHhhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHH
Confidence 33433 36788888 799999 9999999999999864211111 1222323334554331 2234566
Q ss_pred HHHHHHHHhhccc---------c-----------------------------------------------------C-CC
Q 005855 420 SQVHEIVGRINGR---------F-----------------------------------------------------G-TL 436 (673)
Q Consensus 420 ~~l~~lv~~IN~~---------~-----------------------------------------------------g-~~ 436 (673)
+.++++..+|+.+ . - ..
T Consensus 366 ~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~ 445 (590)
T cd03793 366 DTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPE 445 (590)
T ss_pred HHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCC
Confidence 6666665555544 0 0 01
Q ss_pred CcccEEEeCCCCC------HHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCch----hhcc---
Q 005855 437 TAVPIHHLDRSLD------FPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA----QSLG--- 503 (673)
Q Consensus 437 ~~~pV~~~~~~v~------~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~----~~lg--- 503 (673)
+...|+|.+..++ ..+...+|+.||++|+||++||||++++|||||+ .|+|+|..+|.. +.++
T Consensus 446 drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G----~PvI~t~~~gf~~~v~E~v~~~~ 521 (590)
T cd03793 446 DRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG----IPSITTNLSGFGCFMEEHIEDPE 521 (590)
T ss_pred CeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcC----CCEEEccCcchhhhhHHHhccCC
Confidence 1233454443333 2357889999999999999999999999999995 999999999984 4443
Q ss_pred CceEEEC-------CCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHH
Q 005855 504 AGAILVN-------PWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELN 560 (673)
Q Consensus 504 ~~gllVn-------P~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~ 560 (673)
..|++|. +.+++++|++|.+.++++..++........+....+++.+-+..|+++-.
T Consensus 522 ~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~ 585 (590)
T cd03793 522 SYGIYIVDRRFKSPDESVQQLTQYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQ 585 (590)
T ss_pred CceEEEecCCccchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3588887 56788999999999977543333322233366677888887777766544
No 53
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.88 E-value=1.1e-20 Score=208.65 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=131.6
Q ss_pred eEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeec-c-cccCChHHHHHHHHHHHHhCcCccCceEEEE
Q 005855 326 TRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDR-L-DMIKGIPQKLLAFEKFLEENSDWRGKVVLLQ 403 (673)
Q Consensus 326 ~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgR-L-d~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvq 403 (673)
.++.++|||||++.+....... ..+ ...++++|++|+| + ++.||+..+++|+..+ .+ ++.|++
T Consensus 212 ~~i~vI~NGid~~~~~~~~~~~-------~~~-~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~----~~~L~i 276 (405)
T PRK10125 212 GRCRIINNGIDMATEAILAELP-------PVR-ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GD----KIELHT 276 (405)
T ss_pred CCEEEeCCCcCccccccccccc-------ccc-cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CC----CeEEEE
Confidence 4788999999975432211100 001 1246789999999 4 4789999999999875 22 467888
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhc
Q 005855 404 IAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQ 483 (673)
Q Consensus 404 vg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~ 483 (673)
+|.+. ++. . ..+.++....+.+++..+|+.||+||+||.+||||+|++|||||+
T Consensus 277 vG~g~----~~~---~-------------------~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G 330 (405)
T PRK10125 277 FGKFS----PFT---A-------------------GNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIG 330 (405)
T ss_pred EcCCC----ccc---c-------------------cceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcC
Confidence 87421 100 0 124443322367899999999999999999999999999999995
Q ss_pred cCCCceEEEeCCCCchhhc-cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHH
Q 005855 484 DLKKGVLILSEFAGAAQSL-GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELN 560 (673)
Q Consensus 484 ~~~~g~lVlSe~aG~~~~l-g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~ 560 (673)
.|+|+|+.+|+.+.+ +.+|++|+|.|++++|+++...+... +......++++.+ ..|+.+.-++++++..+
T Consensus 331 ----~PVVat~~gG~~Eiv~~~~G~lv~~~d~~~La~~~~~~~~~~--~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 331 ----VPVIATHSDAAREVLQKSGGKTVSEEEVLQLAQLSKPEIAQA--VFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred ----CCEEEeCCCChHHhEeCCcEEEECCCCHHHHHhccCHHHHHH--hhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999998887 45899999999999998653322100 0000123455554 56899988888877654
No 54
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.88 E-value=2.6e-20 Score=196.17 Aligned_cols=278 Identities=20% Similarity=0.186 Sum_probs=192.6
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCC-cchHHHHh-hhcCCEEEEeCHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLP-SRSDLLRA-VLAADLVGFHTYDYARHFVSACTR 308 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp-~r~~il~~-ll~aDlIgF~t~~~~~~Fl~~~~r 308 (673)
..|+|++|+++...+...........++.+..|.-.+... .... ....+..- ...+|.+...+......+..
T Consensus 80 ~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~---- 153 (365)
T cd03807 80 RPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLG--KKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQA---- 153 (365)
T ss_pred CCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCccccc--chhHhHHHHHHHHhccccCeEEeccHHHHHHHHH----
Confidence 4699999999987777776665567888888887654421 0001 11111111 23466665555443333321
Q ss_pred HhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHHHHHH
Q 005855 309 ILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQKLLAF 385 (673)
Q Consensus 309 ~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~L~Af 385 (673)
. +. ...++.++|+|+|...|.+.... ....++++ .++++|+++||+++.||+..+++|+
T Consensus 154 ~-~~-----------~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~ 215 (365)
T cd03807 154 I-GY-----------PPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAA 215 (365)
T ss_pred c-CC-----------ChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHH
Confidence 0 11 13467889999999887653221 11222333 3567899999999999999999999
Q ss_pred HHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEE
Q 005855 386 EKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALV 465 (673)
Q Consensus 386 ~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv 465 (673)
..+.+++|+ +.|+++|.+. +...++.... ... +..+ .+.+ .+. .+++..+|+.||++++
T Consensus 216 ~~l~~~~~~----~~l~i~G~~~-----~~~~~~~~~~---~~~----~~~~--~v~~-~g~--~~~~~~~~~~adi~v~ 274 (365)
T cd03807 216 ALLLKKFPN----ARLLLVGDGP-----DRANLELLAL---KEL----GLED--KVIL-LGE--RSDVPALLNALDVFVL 274 (365)
T ss_pred HHHHHhCCC----eEEEEecCCc-----chhHHHHHHH---Hhc----CCCc--eEEE-ccc--cccHHHHHHhCCEEEe
Confidence 999888765 4588777432 1112222111 111 1111 2443 453 4679999999999999
Q ss_pred cCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHh-
Q 005855 466 TSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVT- 544 (673)
Q Consensus 466 ~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~- 544 (673)
||..||+|++++|||+|+ .|+|+|+.+|..+.+..+|+++++.|+++++++|.++++++ +++.++.+++++++.
T Consensus 275 ps~~e~~~~~~~Ea~a~g----~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~ 349 (365)
T cd03807 275 SSLSEGFPNVLLEAMACG----LPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLADP-ALRQALGEAARERIEE 349 (365)
T ss_pred CCccccCCcHHHHHHhcC----CCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHH
Confidence 999999999999999995 89999999999888855799999999999999999999976 467777788888875
Q ss_pred hCCHHHHHHHHHHH
Q 005855 545 THTAQEWAETFVSE 558 (673)
Q Consensus 545 ~~~~~~W~~~fl~~ 558 (673)
.+++...+++|++.
T Consensus 350 ~~s~~~~~~~~~~~ 363 (365)
T cd03807 350 NFSIEAMVEAYEEL 363 (365)
T ss_pred hCCHHHHHHHHHHH
Confidence 57888888887764
No 55
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.87 E-value=1.6e-20 Score=203.46 Aligned_cols=269 Identities=14% Similarity=0.116 Sum_probs=179.4
Q ss_pred HHHhcCCCCEEEEeCccchhHHHHHHhhC-CCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHH
Q 005855 225 VNKHYKDGDVVWCHDYHLMFLPKCLKEYN-SDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFV 303 (673)
Q Consensus 225 i~~~~~~~DvVwvHDyhl~llp~~Lr~~~-~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl 303 (673)
+.+..+ .|+||+|+.....+..++++.. ...++..+.|..++....+. ...+..+|.+...+..-...+.
T Consensus 79 ~l~~~~-~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--------~~~~~~~d~~i~~S~~~~~~~~ 149 (359)
T PRK09922 79 WLKETQ-PDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLDHKKHAE--------CKKITCADYHLAISSGIKEQMM 149 (359)
T ss_pred HHHhcC-CCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccccchhh--------hhhhhcCCEEEEcCHHHHHHHH
Confidence 333334 5999999987776666666543 23455566676543321111 1223578888887765444432
Q ss_pred HHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeeccc--ccCChHHH
Q 005855 304 SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLD--MIKGIPQK 381 (673)
Q Consensus 304 ~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd--~~KGi~~~ 381 (673)
. .+. ...++.++|+|||.+.+.... ++ ..+++.|+++||+. +.||+..+
T Consensus 150 ~-----~~~-----------~~~ki~vi~N~id~~~~~~~~--~~-----------~~~~~~i~~~Grl~~~~~k~~~~l 200 (359)
T PRK09922 150 A-----RGI-----------SAQRISVIYNPVEIKTIIIPP--PE-----------RDKPAVFLYVGRLKFEGQKNVKEL 200 (359)
T ss_pred H-----cCC-----------CHHHEEEEcCCCCHHHccCCC--cc-----------cCCCcEEEEEEEEecccCcCHHHH
Confidence 1 121 134688999999976653211 10 13467899999996 46999999
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCC--CHHHHHHHHHH
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSL--DFPALCALYAV 459 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v--~~~el~aly~~ 459 (673)
++|+.++. + ++.|+++|. +++.+. +++++.+.|.. ..|+ |.|.+ +.+++..+|+.
T Consensus 201 ~~a~~~~~---~----~~~l~ivG~-----g~~~~~----l~~~~~~~~l~------~~v~-f~G~~~~~~~~~~~~~~~ 257 (359)
T PRK09922 201 FDGLSQTT---G----EWQLHIIGD-----GSDFEK----CKAYSRELGIE------QRII-WHGWQSQPWEVVQQKIKN 257 (359)
T ss_pred HHHHHhhC---C----CeEEEEEeC-----CccHHH----HHHHHHHcCCC------CeEE-EecccCCcHHHHHHHHhc
Confidence 99998762 2 467888874 333333 44444443311 1355 46665 45899999999
Q ss_pred cCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeC-CCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 005855 460 TDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSE-FAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRH 536 (673)
Q Consensus 460 ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe-~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~ 536 (673)
||++|+||..||||++++|||||| .|+|+|+ .+|..+.+ |.+|++|+|.|++++|++|.++++.+. .| ..
T Consensus 258 ~d~~v~~s~~Egf~~~~lEAma~G----~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~-~~--~~ 330 (359)
T PRK09922 258 VSALLLTSKFEGFPMTLLEAMSYG----IPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV-KY--QH 330 (359)
T ss_pred CcEEEECCcccCcChHHHHHHHcC----CCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc-cC--CH
Confidence 999999999999999999999995 8999999 88888777 578999999999999999999998774 21 11
Q ss_pred HHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 537 WHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 537 ~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
....+.+.++..+...+++...+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
T PRK09922 331 DAIPNSIERFYEVLYFKNLNNALFS 355 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2223345555555555555555443
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.87 E-value=3.5e-20 Score=196.20 Aligned_cols=273 Identities=20% Similarity=0.181 Sum_probs=190.0
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc----------hHHHHhhhcCCEEEEeCHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR----------SDLLRAVLAADLVGFHTYDYAR 300 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r----------~~il~~ll~aDlIgF~t~~~~~ 300 (673)
..|+|++|+............+..+.++.+.+|.+++.. ....+.. ......+..+|.+.+.+.....
T Consensus 84 ~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 161 (374)
T cd03817 84 GPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDY--THYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIAD 161 (374)
T ss_pred CCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHH--HHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHH
Confidence 459999998755443333333345788999999887632 1111111 0111234578888887775443
Q ss_pred HHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCC
Q 005855 301 HFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKG 377 (673)
Q Consensus 301 ~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KG 377 (673)
.+.. . +...++.++|+|+|...|.+.... .. ++.+ .+++.|+++||+.+.||
T Consensus 162 ~~~~-----~------------~~~~~~~vi~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~i~~~G~~~~~k~ 216 (374)
T cd03817 162 LLRE-----Y------------GVKRPIEVIPTGIDLDRFEPVDGD----DE----RRKLGIPEDEPVLLYVGRLAKEKN 216 (374)
T ss_pred HHHh-----c------------CCCCceEEcCCccchhccCccchh----HH----HHhcCCCCCCeEEEEEeeeecccC
Confidence 3321 1 112358899999999887653210 11 2222 35778999999999999
Q ss_pred hHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHH
Q 005855 378 IPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457 (673)
Q Consensus 378 i~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly 457 (673)
+..+++|++++.++.++ +.|+++|.+ +.. ..+++++.+.+. . ..|. +.+.++.+++..+|
T Consensus 217 ~~~l~~~~~~~~~~~~~----~~l~i~G~~-----~~~----~~~~~~~~~~~~----~--~~v~-~~g~~~~~~~~~~~ 276 (374)
T cd03817 217 IDFLIRAFARLLKEEPD----VKLVIVGDG-----PER----EELEELARELGL----A--DRVI-FTGFVPREELPDYY 276 (374)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEEEeCC-----chH----HHHHHHHHHcCC----C--CcEE-EeccCChHHHHHHH
Confidence 99999999999877654 568878742 222 234444433221 1 1244 57899999999999
Q ss_pred HHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHH
Q 005855 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKR 535 (673)
Q Consensus 458 ~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r 535 (673)
+.||++++||..||+|++++|||+|| .|+|+|..++..+.+ +.+|+++++.|. +++++|.++++++. .+.++
T Consensus 277 ~~ad~~l~~s~~e~~~~~~~Ea~~~g----~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~-~~~~~ 350 (374)
T cd03817 277 KAADLFVFASTTETQGLVLLEAMAAG----LPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE-LRRRL 350 (374)
T ss_pred HHcCEEEecccccCcChHHHHHHHcC----CcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH-HHHHH
Confidence 99999999999999999999999995 899999999888887 468999999888 99999999999875 45667
Q ss_pred HHHhhHHHhhCCHHHHHHHHHHHH
Q 005855 536 HWHNFTHVTTHTAQEWAETFVSEL 559 (673)
Q Consensus 536 ~~~~~~~v~~~~~~~W~~~fl~~L 559 (673)
.+++++.+.+++ |++.+.+.+
T Consensus 351 ~~~~~~~~~~~~---~~~~~~~~~ 371 (374)
T cd03817 351 SKNAEESAEKFS---FAKKVEKLY 371 (374)
T ss_pred HHHHHHHHHHHH---HHHHHHHHH
Confidence 777888887765 555544443
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.87 E-value=5.3e-20 Score=192.58 Aligned_cols=282 Identities=22% Similarity=0.170 Sum_probs=201.6
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhh----cCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR----TLPSRSDLLRAVLAADLVGFHTYDYARHFVSAC 306 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr----~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~ 306 (673)
..|+|++|+++...+.. +..+..+.++.+.+|.+++...... ...........+..+|.+.+.+......+.+
T Consensus 85 ~~Dii~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~-- 161 (374)
T cd03801 85 RFDVVHAHDWLALLAAA-LAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRE-- 161 (374)
T ss_pred CCcEEEEechhHHHHHH-HHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHh--
Confidence 46999999999887765 4445678899999999876432110 0011122233456788888888766555432
Q ss_pred HHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHH
Q 005855 307 TRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFE 386 (673)
Q Consensus 307 ~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~ 386 (673)
.. .....++.++|+|+|...+.+.. ...........+++.|+++||+++.||+..+++|+.
T Consensus 162 --~~-----------~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~ 222 (374)
T cd03801 162 --LG-----------GVPPEKITVIPNGVDTERFRPAP------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALA 222 (374)
T ss_pred --cC-----------CCCCCcEEEecCcccccccCccc------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHH
Confidence 10 01125788999999998775421 000000111245688999999999999999999999
Q ss_pred HHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEc
Q 005855 387 KFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVT 466 (673)
Q Consensus 387 ~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~ 466 (673)
.+.+++|+ +.|+++|. ++....++ +++.+.+. . ..|. +.+.++.+++..+|+.||++++|
T Consensus 223 ~~~~~~~~----~~l~i~G~-----~~~~~~~~----~~~~~~~~----~--~~v~-~~g~~~~~~~~~~~~~~di~i~~ 282 (374)
T cd03801 223 KLRKEYPD----VRLVIVGD-----GPLREELE----ALAAELGL----G--DRVT-FLGFVPDEDLPALYAAADVFVLP 282 (374)
T ss_pred HHhhhcCC----eEEEEEeC-----cHHHHHHH----HHHHHhCC----C--cceE-EEeccChhhHHHHHHhcCEEEec
Confidence 99887764 56887772 23333333 33322221 1 1344 57899999999999999999999
Q ss_pred CCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhh-HHH
Q 005855 467 SLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNF-THV 543 (673)
Q Consensus 467 Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~-~~v 543 (673)
+..||+|++++|||+|| .|+|++..+|..+.+ +.+|+++++.|+++++++|.++++.+. .+.++.++++ ...
T Consensus 283 ~~~~~~~~~~~Ea~~~g----~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~ 357 (374)
T cd03801 283 SLYEGFGLVLLEAMAAG----LPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE-LRRRLGEAARERVA 357 (374)
T ss_pred chhccccchHHHHHHcC----CcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH-HHHHHHHHHHHHHH
Confidence 99999999999999995 899999999988888 468999999999999999999998754 5566666666 455
Q ss_pred hhCCHHHHHHHHHHHH
Q 005855 544 TTHTAQEWAETFVSEL 559 (673)
Q Consensus 544 ~~~~~~~W~~~fl~~L 559 (673)
+.++++.+++.+++.+
T Consensus 358 ~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 358 ERFSWDRVAARTEEVY 373 (374)
T ss_pred HhcCHHHHHHHHHHhh
Confidence 7889999998887654
No 58
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.87 E-value=6.5e-20 Score=194.50 Aligned_cols=279 Identities=18% Similarity=0.164 Sum_probs=197.3
Q ss_pred cCCCCEEEEeC-ccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCc--------chHH-HHhhhcCCEEEEeCHHH
Q 005855 229 YKDGDVVWCHD-YHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPS--------RSDL-LRAVLAADLVGFHTYDY 298 (673)
Q Consensus 229 ~~~~DvVwvHD-yhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~--------r~~i-l~~ll~aDlIgF~t~~~ 298 (673)
....|+|++|. ..+..++........+.++.+.+|..+|.......... ...+ ...+..+|.+.+.+...
T Consensus 97 ~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 176 (394)
T cd03794 97 RRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISPGM 176 (394)
T ss_pred ccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECHHH
Confidence 34569999997 44444554444445578999999988774432111111 1111 12356789999999877
Q ss_pred HHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCCh
Q 005855 299 ARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGI 378 (673)
Q Consensus 299 ~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi 378 (673)
...+.. .+ ....++.++|+|+|...+.+..... ..... ....++.+|+++||+.+.||+
T Consensus 177 ~~~~~~-----~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~i~~~G~~~~~k~~ 235 (394)
T cd03794 177 REYLVR-----RG-----------VPPEKISVIPNGVDLELFKPPPADE----SLRKE-LGLDDKFVVLYAGNIGRAQGL 235 (394)
T ss_pred HHHHHh-----cC-----------CCcCceEEcCCCCCHHHcCCccchh----hhhhc-cCCCCcEEEEEecCcccccCH
Confidence 766541 11 1235788999999998776532111 01111 112467889999999999999
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 458 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~ 458 (673)
..+++|+.++.+. |+ +.|+++|. ++....+++ ++... ....|.+ .+.++.+++.++|+
T Consensus 236 ~~l~~~~~~l~~~-~~----~~l~i~G~-----~~~~~~~~~----~~~~~-------~~~~v~~-~g~~~~~~~~~~~~ 293 (394)
T cd03794 236 DTLLEAAALLKDR-PD----IRFLIVGD-----GPEKEELKE----LAKAL-------GLDNVTF-LGRVPKEELPELLA 293 (394)
T ss_pred HHHHHHHHHHhhc-CC----eEEEEeCC-----cccHHHHHH----HHHHc-------CCCcEEE-eCCCChHHHHHHHH
Confidence 9999999998765 44 55777763 222223332 22111 1124665 46999999999999
Q ss_pred HcCEEEEcCCCcCC-----ChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHH
Q 005855 459 VTDVALVTSLRDGM-----NLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEE 531 (673)
Q Consensus 459 ~ADv~vv~Sl~EGf-----~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~e 531 (673)
.||++++||..|++ +++++|||+|| .|+|+|..+|..+.+ +.+|+++++.|+++++++|.++++.+ ++
T Consensus 294 ~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G----~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~-~~ 368 (394)
T cd03794 294 AADVGLVPLKPGPAFEGVSPSKLFEYMAAG----KPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDP-EE 368 (394)
T ss_pred hhCeeEEeccCcccccccCchHHHHHHHCC----CcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhCh-HH
Confidence 99999999999876 66789999995 899999999999888 35799999999999999999999654 57
Q ss_pred HHHHHHHhhHHHh-hCCHHHHHHHH
Q 005855 532 REKRHWHNFTHVT-THTAQEWAETF 555 (673)
Q Consensus 532 r~~r~~~~~~~v~-~~~~~~W~~~f 555 (673)
+..+.+++++++. +|+++.++++|
T Consensus 369 ~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 369 RAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 7777888888887 78988888876
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.87 E-value=5.4e-20 Score=193.51 Aligned_cols=282 Identities=23% Similarity=0.218 Sum_probs=197.0
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
...|+|++|......+......+..+.++.+..|.+++....... ..+......+..+|.+.+.+......+.+..
T Consensus 92 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--- 167 (377)
T cd03798 92 FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKR-LLRALLRRALRRADAVIAVSEALADELKALG--- 167 (377)
T ss_pred CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchh-hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhc---
Confidence 356999999655444433333344457888888877653321111 1222333446689999999877666554311
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFL 389 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll 389 (673)
....++.++|+|+|.+.+.+.... ....+ ....+++.|+++||+++.||+..+++|++.+.
T Consensus 168 -------------~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~ 228 (377)
T cd03798 168 -------------IDPEKVTVIPNGVDTERFSPADRA-----EARKL-GLPEDKKVILFVGRLVPRKGIDYLIEALARLL 228 (377)
T ss_pred -------------CCCCceEEcCCCcCcccCCCcchH-----HHHhc-cCCCCceEEEEeccCccccCHHHHHHHHHHHH
Confidence 113478899999999887653210 00111 11246788999999999999999999999998
Q ss_pred HhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCC
Q 005855 390 EENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLR 469 (673)
Q Consensus 390 ~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~ 469 (673)
+++|+ +.|+++|.+ ++...++ +++...+ ..+.+.+.|.++.+++..+|+.||++++||..
T Consensus 229 ~~~~~----~~l~i~g~~-----~~~~~~~----~~~~~~~-------~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~ 288 (377)
T cd03798 229 KKRPD----VHLVIVGDG-----PLREALE----ALAAELG-------LEDRVTFLGAVPHEEVPAYYAAADVFVLPSLR 288 (377)
T ss_pred hcCCC----eEEEEEcCC-----cchHHHH----HHHHhcC-------CcceEEEeCCCCHHHHHHHHHhcCeeecchhh
Confidence 77664 557777632 2222333 3332222 12234457899999999999999999999999
Q ss_pred cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhh-HHHhhC
Q 005855 470 DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNF-THVTTH 546 (673)
Q Consensus 470 EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~-~~v~~~ 546 (673)
||+|++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|+++++++|.++++++.. ++..+++ ...+.+
T Consensus 289 ~~~~~~~~Ea~~~G----~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 361 (377)
T cd03798 289 EGFGLVLLEAMACG----LPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL---RLGRAARRRVAERF 361 (377)
T ss_pred ccCChHHHHHHhcC----CCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH---HHhHHHHHHHHHHh
Confidence 99999999999995 899999999988877 4567999999999999999999998753 3444444 445677
Q ss_pred CHHHHHHHHHHHHHH
Q 005855 547 TAQEWAETFVSELND 561 (673)
Q Consensus 547 ~~~~W~~~fl~~L~~ 561 (673)
+++.+++.+.+.+++
T Consensus 362 s~~~~~~~~~~~~~~ 376 (377)
T cd03798 362 SWENVAERLLELYRE 376 (377)
T ss_pred hHHHHHHHHHHHHhh
Confidence 888888888777654
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.87 E-value=3.5e-20 Score=193.53 Aligned_cols=262 Identities=17% Similarity=0.105 Sum_probs=183.3
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|+.+...+...+... ..++.+..|..++...... .+.......+..+|.+.+.+......+ .
T Consensus 83 ~~d~i~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~ii~~s~~~~~~~-------~ 151 (348)
T cd03820 83 KPDVVISFLTSLLTFLASLGLK--IVKLIVSEHNSPDAYKKRL--RRLLLRRLLYRRADAVVVLTEEDRALY-------Y 151 (348)
T ss_pred CCCEEEEcCchHHHHHHHHhhc--cccEEEecCCCccchhhhh--HHHHHHHHHHhcCCEEEEeCHHHHHHh-------h
Confidence 5699999998732222222222 1477888887654322111 011112334567898888886554111 0
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~ 390 (673)
.....++.++|+|+|...+... ...+++.++++||+.+.||+..+++|++.+.+
T Consensus 152 -----------~~~~~~~~vi~~~~~~~~~~~~---------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~ 205 (348)
T cd03820 152 -----------KKFNKNVVVIPNPLPFPPEEPS---------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK 205 (348)
T ss_pred -----------ccCCCCeEEecCCcChhhcccc---------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh
Confidence 1113478899999998766432 12467899999999999999999999999988
Q ss_pred hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCc
Q 005855 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRD 470 (673)
Q Consensus 391 ~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~E 470 (673)
.+|++ .|+++|.. ++... +++++.+.+. .+.+.+.+. .+++..+|+.||++++||..|
T Consensus 206 ~~~~~----~l~i~G~~-----~~~~~----~~~~~~~~~~-------~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e 263 (348)
T cd03820 206 KHPDW----KLRIVGDG-----PEREA----LEALIKELGL-------EDRVILLGF--TKNIEEYYAKASIFVLTSRFE 263 (348)
T ss_pred cCCCe----EEEEEeCC-----CCHHH----HHHHHHHcCC-------CCeEEEcCC--cchHHHHHHhCCEEEeCcccc
Confidence 77764 57777742 22222 3333333321 123334555 689999999999999999999
Q ss_pred CCChhHHHHHhhccCCCceEEEeCCCCchhhc---cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCC
Q 005855 471 GMNLVSYEFVACQDLKKGVLILSEFAGAAQSL---GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHT 547 (673)
Q Consensus 471 Gf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l---g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~ 547 (673)
|||++++|||+|| .|+|+|+..+..+.+ +.+|+++++.|++++|++|.++++.+ +.+..+.+++++.+++++
T Consensus 264 ~~~~~~~Ea~a~G----~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~-~~~~~~~~~~~~~~~~~~ 338 (348)
T cd03820 264 GFPMVLLEAMAFG----LPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDE-ELRKRMGANARESAERFS 338 (348)
T ss_pred ccCHHHHHHHHcC----CCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHhC
Confidence 9999999999995 899999876655544 34899999999999999999999865 466666777788889999
Q ss_pred HHHHHHHHH
Q 005855 548 AQEWAETFV 556 (673)
Q Consensus 548 ~~~W~~~fl 556 (673)
++.++++|.
T Consensus 339 ~~~~~~~~~ 347 (348)
T cd03820 339 IENIIKQWE 347 (348)
T ss_pred HHHHHHHhc
Confidence 988888764
No 61
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.87 E-value=3.4e-20 Score=196.52 Aligned_cols=274 Identities=23% Similarity=0.176 Sum_probs=192.9
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc----hHHH-HhhhcCCEEEEeCHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR----SDLL-RAVLAADLVGFHTYDYARHFVSA 305 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r----~~il-~~ll~aDlIgF~t~~~~~~Fl~~ 305 (673)
..|+|++|......+......+..+.++.+++|..||..-........ ..+. .....+|.+.+.+......+..
T Consensus 83 ~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~- 161 (364)
T cd03814 83 APDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRA- 161 (364)
T ss_pred CCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhc-
Confidence 459999987554433333323345678888899877632211111111 1122 2234688888887765542211
Q ss_pred HHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHH
Q 005855 306 CTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAF 385 (673)
Q Consensus 306 ~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af 385 (673)
....++.++|+|+|.+.|.+..... .....+. ..++++|+++||+.+.||+..+++|+
T Consensus 162 -----------------~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~ 219 (364)
T cd03814 162 -----------------RGFRRVRLWPRGVDTELFHPRRRDE---ALRARLG--PPDRPVLLYVGRLAPEKNLEALLDAD 219 (364)
T ss_pred -----------------cCCCceeecCCCccccccCcccccH---HHHHHhC--CCCCeEEEEEeccccccCHHHHHHHH
Confidence 0123678899999998886532211 1111111 24578899999999999999999999
Q ss_pred HHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEE
Q 005855 386 EKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALV 465 (673)
Q Consensus 386 ~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv 465 (673)
..+.++ |+ +.|+++|.. ++...++ .. ...|.+ .|.++.+++..+|+.||++++
T Consensus 220 ~~l~~~-~~----~~l~i~G~~-----~~~~~~~--------~~--------~~~v~~-~g~~~~~~~~~~~~~~d~~l~ 272 (364)
T cd03814 220 LPLRRR-PP----VRLVIVGDG-----PARARLE--------AR--------YPNVHF-LGFLDGEELAAAYASADVFVF 272 (364)
T ss_pred HHhhhc-CC----ceEEEEeCC-----chHHHHh--------cc--------CCcEEE-EeccCHHHHHHHHHhCCEEEE
Confidence 998776 55 458877732 2221221 10 113554 577899999999999999999
Q ss_pred cCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH
Q 005855 466 TSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV 543 (673)
Q Consensus 466 ~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v 543 (673)
||..||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.|.++++++|.++++.+ +++.++..++++.+
T Consensus 273 ~s~~e~~~~~~lEa~a~g----~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~ 347 (364)
T cd03814 273 PSRTETFGLVVLEAMASG----LPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADP-ELRRRMAARARAEA 347 (364)
T ss_pred CcccccCCcHHHHHHHcC----CCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH
Confidence 999999999999999995 899999999988888 36899999999999999999999865 46777778888888
Q ss_pred hhCCHHHHHHHHHHHH
Q 005855 544 TTHTAQEWAETFVSEL 559 (673)
Q Consensus 544 ~~~~~~~W~~~fl~~L 559 (673)
.++++..+++++++.+
T Consensus 348 ~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 348 ERRSWEAFLDNLLEAY 363 (364)
T ss_pred hhcCHHHHHHHHHHhh
Confidence 8899999998887654
No 62
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.86 E-value=1.5e-19 Score=198.65 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=154.6
Q ss_pred hhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCc
Q 005855 285 VLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRK 364 (673)
Q Consensus 285 ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~ 364 (673)
+..+|.|.+.+......+.+ .. .....++.++|+|||.+.|.+...... ....+++
T Consensus 170 ~~~ad~vi~~S~~~~~~l~~----~~-----------~~~~~~v~vipngvd~~~f~~~~~~~~---------~~~~~~~ 225 (397)
T TIGR03087 170 AARFDAATFVSRAEAELFRR----LA-----------PEAAGRITAFPNGVDADFFSPDRDYPN---------PYPPGKR 225 (397)
T ss_pred HhhCCeEEEcCHHHHHHHHH----hC-----------CCCCCCeEEeecccchhhcCCCccccC---------CCCCCCc
Confidence 34678888777765554432 11 112347889999999998865321100 0013567
Q ss_pred eEEEeecccccCChHHHH----HHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCccc
Q 005855 365 VMLGVDRLDMIKGIPQKL----LAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVP 440 (673)
Q Consensus 365 iIl~VgRLd~~KGi~~~L----~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~p 440 (673)
+|+++||+++.||++.++ +++..+.+++|++ .|+++|.. ++ .+++++... ..
T Consensus 226 ~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~----~l~ivG~g-----~~-----~~~~~l~~~----------~~ 281 (397)
T TIGR03087 226 VLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAA----EFYIVGAK-----PS-----PAVRALAAL----------PG 281 (397)
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCc----EEEEECCC-----Ch-----HHHHHhccC----------CC
Confidence 899999999999999888 5666677777765 48888742 21 123333111 12
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCC-CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-cCceEEECCCCHHHHH
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSL-RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-GAGAILVNPWNITEVA 518 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl-~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-g~~gllVnP~D~~~lA 518 (673)
|+ +.|.++ ++..+|+.||++|+||. .||++++++|||||| .|+|+|..++..... +..|+++. .|++++|
T Consensus 282 V~-~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G----~PVV~t~~~~~~i~~~~~~g~lv~-~~~~~la 353 (397)
T TIGR03087 282 VT-VTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMA----KPVVASPEAAEGIDALPGAELLVA-ADPADFA 353 (397)
T ss_pred eE-EeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcC----CCEEecCcccccccccCCcceEeC-CCHHHHH
Confidence 55 467776 68899999999999996 599999999999995 888988864322111 34688886 8999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHH
Q 005855 519 NAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELN 560 (673)
Q Consensus 519 ~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~ 560 (673)
++|.++++++ +.+..+.+++++++ ++|+++..++++.+.+.
T Consensus 354 ~ai~~ll~~~-~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 354 AAILALLANP-AEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHcCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999864 46777888888887 57899988888876653
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=99.86 E-value=1.7e-20 Score=200.87 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=146.4
Q ss_pred eecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCC
Q 005855 331 FPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRT 410 (673)
Q Consensus 331 iP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~ 410 (673)
+|+|||++.|.+.... ..+..+.+...+++..+|++|||+++.||+..+++|++++.+++|++..++.|+++|.
T Consensus 118 I~~GVD~~~f~p~~~~--~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~---- 191 (335)
T PHA01633 118 VFHGINFKIVENAEKL--VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH---- 191 (335)
T ss_pred eeCCCChhhcCccchh--hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH----
Confidence 6789999998763210 1112222222234667899999999999999999999999999998766777876651
Q ss_pred ChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeC--CCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCc
Q 005855 411 DVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLD--RSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKG 488 (673)
Q Consensus 411 ~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~--~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g 488 (673)
.. ++++ +..+ .|+++. |.++.+++.++|+.||+||+||..||||++++|||||| .
T Consensus 192 --~~-------~~~l--------~l~~--~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G----~ 248 (335)
T PHA01633 192 --KQ-------FTQL--------EVPA--NVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMG----T 248 (335)
T ss_pred --HH-------HHHc--------CCCC--cEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcC----C
Confidence 11 1111 1111 355543 67789999999999999999999999999999999995 8
Q ss_pred eEEEeCCCCchhhcc------------------C--ceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCH
Q 005855 489 VLILSEFAGAAQSLG------------------A--GAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTA 548 (673)
Q Consensus 489 ~lVlSe~aG~~~~lg------------------~--~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~ 548 (673)
|+|+|..+|..|..| . .|+++++.|++++|++|..++.+.. +..+..++++..+++++
T Consensus 249 PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~--~~~~~~~~~~~a~~f~~ 326 (335)
T PHA01633 249 PVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD--REERSMKLKELAKKYDI 326 (335)
T ss_pred CEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC--hhhhhHHHHHHHHhcCH
Confidence 999998888777543 1 2567889999999999999988764 33445667889999998
Q ss_pred HHHHHHHH
Q 005855 549 QEWAETFV 556 (673)
Q Consensus 549 ~~W~~~fl 556 (673)
+.-.++|+
T Consensus 327 ~~~~~~~~ 334 (335)
T PHA01633 327 RNLYTRFL 334 (335)
T ss_pred HHHHHHhh
Confidence 88877764
No 64
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.85 E-value=4.4e-19 Score=187.34 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=178.6
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|.+..+..+.....+..++++.+++|-.++.... ...+. ...|.+...+....+.|.. .
T Consensus 96 ~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~------~~~~~---~~~d~ii~~s~~~~~~~~~----~- 161 (359)
T cd03823 96 RPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPR------QGLFK---KGGDAVIAPSRFLLDRYVA----N- 161 (359)
T ss_pred CCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecch------hhhhc---cCCCEEEEeCHHHHHHHHH----c-
Confidence 35999999875554433322233458899999965432111 11111 1128888877655554432 1
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~ 390 (673)
+ ....++.++|+|+|...+.+... ....++.+|+++||+.+.||+..+++|+..+.+
T Consensus 162 ~-----------~~~~~~~vi~n~~~~~~~~~~~~------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~ 218 (359)
T cd03823 162 G-----------LFAEKISVIRNGIDLDRAKRPRR------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR 218 (359)
T ss_pred C-----------CCccceEEecCCcChhhcccccc------------CCCCCceEEEEEecCccccCHHHHHHHHHHHHh
Confidence 1 11357899999999987754211 012457789999999999999999999998865
Q ss_pred hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC-C
Q 005855 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL-R 469 (673)
Q Consensus 391 ~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl-~ 469 (673)
+ ++.|+++|.... ........ ..+ ..|. +.|.++.+++..+|+.||++++||. .
T Consensus 219 --~----~~~l~i~G~~~~-----~~~~~~~~-----~~~--------~~v~-~~g~~~~~~~~~~~~~ad~~i~ps~~~ 273 (359)
T cd03823 219 --G----DIELVIVGNGLE-----LEEESYEL-----EGD--------PRVE-FLGAYPQEEIDDFYAEIDVLVVPSIWP 273 (359)
T ss_pred --c----CcEEEEEcCchh-----hhHHHHhh-----cCC--------CeEE-EeCCCCHHHHHHHHHhCCEEEEcCccc
Confidence 3 356888874321 11111111 111 1344 5789999999999999999999997 7
Q ss_pred cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCC
Q 005855 470 DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHT 547 (673)
Q Consensus 470 EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~ 547 (673)
||+|++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|+++++++|.++++.+ +.++.+.+++++.+..
T Consensus 274 e~~~~~~~Ea~a~G----~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 274 ENFPLVIREALAAG----VPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP-DLLERLRAGIEPPRSI-- 346 (359)
T ss_pred CCCChHHHHHHHCC----CCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh-HHHHHHHHhHHHhhhH--
Confidence 99999999999995 899999999988888 34799999999999999999999854 4566666666666543
Q ss_pred HHHHHHHHHHHH
Q 005855 548 AQEWAETFVSEL 559 (673)
Q Consensus 548 ~~~W~~~fl~~L 559 (673)
...++++++.+
T Consensus 347 -~~~~~~~~~~~ 357 (359)
T cd03823 347 -EDQAEEYLKLY 357 (359)
T ss_pred -HHHHHHHHHHh
Confidence 55555555443
No 65
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.85 E-value=1.8e-19 Score=199.63 Aligned_cols=280 Identities=11% Similarity=0.026 Sum_probs=180.8
Q ss_pred CCCCEEEEeCccch--hHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcch---HH---HHh--hhcCCEEEEeCHHHH
Q 005855 230 KDGDVVWCHDYHLM--FLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRS---DL---LRA--VLAADLVGFHTYDYA 299 (673)
Q Consensus 230 ~~~DvVwvHDyhl~--llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~---~i---l~~--ll~aDlIgF~t~~~~ 299 (673)
+..|+|++|..... .+...+-.+..+.++++.+|--+++..... .+... .+ ++. ...||.|...+....
T Consensus 94 ~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~ 172 (415)
T cd03816 94 RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALK-LGENHPLVRLAKWYEKLFGRLADYNLCVTKAMK 172 (415)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcc-cCCCCHHHHHHHHHHHHHhhcCCEeeecCHHHH
Confidence 35699999985432 222333233356889988886443211010 11000 01 111 235788877776544
Q ss_pred HHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHH---------------H--hcC
Q 005855 300 RHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQE---------------T--FAG 362 (673)
Q Consensus 300 ~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~---------------~--~~~ 362 (673)
+.+.+ .+ ....++.++|+| +...|.+.... ........ . -++
T Consensus 173 ~~l~~-----~~-----------~~~~ki~vI~Ng-~~~~f~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (415)
T cd03816 173 EDLQQ-----FN-----------NWKIRATVLYDR-PPEQFRPLPLE----EKHELFLKLAKTFLTRELRIGAVQLSEER 231 (415)
T ss_pred HHHHh-----hh-----------ccCCCeeecCCC-CHHHceeCcHH----HHHHHHHhccccccccccccccceecCCC
Confidence 33321 11 124578899999 55677654211 11111110 0 123
Q ss_pred CceEEEeecccccCChHHHHHHHHHHHHhCcCc--cCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCccc
Q 005855 363 RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDW--RGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVP 440 (673)
Q Consensus 363 ~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~--~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~p 440 (673)
..+++++||+.+.||+..+|+|+..+.+..++. ..++.|+++|. +++.+ ++++++.+.+ ...
T Consensus 232 ~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~-----G~~~~----~l~~~~~~~~-------l~~ 295 (415)
T cd03816 232 PALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGK-----GPLKE----KYLERIKELK-------LKK 295 (415)
T ss_pred ceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEec-----CccHH----HHHHHHHHcC-------CCc
Confidence 467889999999999999999999987642110 12467888874 33333 3444444322 235
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEc---CCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHH
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVT---SLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNIT 515 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~---Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~ 515 (673)
++++.+.++.+++..+|+.||++|++ +..+||+++++|||||| .|+|+|+.+|..+.+ |.+|++|+ |++
T Consensus 296 ~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G----~PVI~s~~~~~~eiv~~~~~G~lv~--d~~ 369 (415)
T cd03816 296 VTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCG----LPVCALDFKCIDELVKHGENGLVFG--DSE 369 (415)
T ss_pred EEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcC----CCEEEeCCCCHHHHhcCCCCEEEEC--CHH
Confidence 77778889999999999999999974 33588999999999995 899999999988888 56899994 999
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHhhHHHhhCCHHHHHHHHHH
Q 005855 516 EVANAIARALNMS--PEEREKRHWHNFTHVTTHTAQEWAETFVS 557 (673)
Q Consensus 516 ~lA~aI~~aL~m~--~~er~~r~~~~~~~v~~~~~~~W~~~fl~ 557 (673)
++|++|.++++++ ++++.++.+++++..+. +|.+.+.+
T Consensus 370 ~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~----~~~~~~~~ 409 (415)
T cd03816 370 ELAEQLIDLLSNFPNRGKLNSLKKGAQEESEL----RWDENWDR 409 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhc----CHHHHHHH
Confidence 9999999999972 56777777777777643 45555443
No 66
>PHA01630 putative group 1 glycosyl transferase
Probab=99.85 E-value=1.8e-19 Score=193.87 Aligned_cols=214 Identities=12% Similarity=0.067 Sum_probs=153.9
Q ss_pred cCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceE
Q 005855 287 AADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVM 366 (673)
Q Consensus 287 ~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iI 366 (673)
.+|.|...+......+.. .+.. ...++.++|+|||++.|.+.... ..++.+|
T Consensus 94 ~ad~ii~~S~~~~~~l~~-----~g~~----------~~~~i~vIpNGVd~~~f~~~~~~-------------~~~~~vl 145 (331)
T PHA01630 94 PVDEIVVPSQWSKNAFYT-----SGLK----------IPQPIYVIPHNLNPRMFEYKPKE-------------KPHPCVL 145 (331)
T ss_pred cCCEEEECCHHHHHHHHH-----cCCC----------CCCCEEEECCCCCHHHcCCCccc-------------cCCCEEE
Confidence 488888888765555432 1110 12368899999999988643110 1244566
Q ss_pred EEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCC
Q 005855 367 LGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDR 446 (673)
Q Consensus 367 l~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~ 446 (673)
++++|+.+.||++.+|+|++.+.+++|+ +.|+++|.. +. +. . +. .++ + +.+
T Consensus 146 ~~~g~~~~~Kg~d~Li~A~~~l~~~~~~----~~llivG~~-----~~--~~--~---l~-~~~------~------~~~ 196 (331)
T PHA01630 146 AILPHSWDRKGGDIVVKIFHELQNEGYD----FYFLIKSSN-----ML--DP--R---LF-GLN------G------VKT 196 (331)
T ss_pred EEeccccccCCHHHHHHHHHHHHhhCCC----EEEEEEeCc-----cc--ch--h---hc-ccc------c------eec
Confidence 6778899999999999999999887765 458877721 11 11 1 10 011 1 135
Q ss_pred CCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECC-------------
Q 005855 447 SLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNP------------- 511 (673)
Q Consensus 447 ~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP------------- 511 (673)
.++.+++..+|+.||+||+||..||||++++|||||| .|+|+|+.+|..+.+ |.+|++|++
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G----~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALG----LDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIH 272 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcC----CCEEEeCCCCchhhccCCCceEEeeecccccccccCCcc
Confidence 6788999999999999999999999999999999995 999999998888877 456666532
Q ss_pred ------CCHHHHHHHHHHHhcCC--HHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 512 ------WNITEVANAIARALNMS--PEEREKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 512 ------~D~~~lA~aI~~aL~m~--~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
.|.+++++++.++|..+ ++.++......+...+++++...++++++.+++
T Consensus 273 ~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 273 VGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 27889999999999874 333434444455677899999999999887753
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.85 E-value=2.6e-19 Score=190.74 Aligned_cols=264 Identities=22% Similarity=0.212 Sum_probs=180.5
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
.+.|+|++|+...+.....+... .+.+..+++|........+..+ ........+..+|.|.+.+..+.+.+.. .
T Consensus 82 ~~~Dii~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~~s~~~~~~~~~----~ 155 (357)
T cd03795 82 KKADVIHLHFPNPLADLALLLLP-RKKPVVVHWHSDIVKQKLLLKL-YRPLQRRFLRRADAIVATSPNYAETSPV----L 155 (357)
T ss_pred CCCCEEEEecCcchHHHHHHHhc-cCceEEEEEcChhhccchhhhh-hhHHHHHHHHhcCEEEeCcHHHHHHHHH----h
Confidence 45699999986544332222222 4667788888643221111100 1111223456789888887765554321 1
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFL 389 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll 389 (673)
. ....++.++|+|+|.+.|.+.... . ........++++|+++||+.+.||+..+++|++++.
T Consensus 156 -~-----------~~~~~~~~i~~gi~~~~~~~~~~~---~---~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 217 (357)
T cd03795 156 -R-----------RFRDKVRVIPLGLDPARYPRPDAL---E---EAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP 217 (357)
T ss_pred -c-----------CCccceEEecCCCChhhcCCcchh---h---hHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc
Confidence 1 112478899999999887643210 0 011111246789999999999999999999999864
Q ss_pred HhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC-
Q 005855 390 EENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL- 468 (673)
Q Consensus 390 ~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl- 468 (673)
++.|+++|.+ +... .+.+++.+.+. . ..|+ +.|.++.+++..+|+.||++++||.
T Consensus 218 --------~~~l~i~G~g-----~~~~----~~~~~~~~~~~----~--~~V~-~~g~v~~~~~~~~~~~ad~~i~ps~~ 273 (357)
T cd03795 218 --------DAPLVIVGEG-----PLEA----ELEALAAALGL----L--DRVR-FLGRLDDEEKAALLAACDVFVFPSVE 273 (357)
T ss_pred --------CcEEEEEeCC-----hhHH----HHHHHHHhcCC----c--ceEE-EcCCCCHHHHHHHHHhCCEEEeCCcc
Confidence 4668888742 3222 33344333221 1 1355 5799999999999999999999996
Q ss_pred -CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc---cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHh
Q 005855 469 -RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL---GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVT 544 (673)
Q Consensus 469 -~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l---g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~ 544 (673)
.||||++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|+++++++|.++++++ ++++++.+++++++.
T Consensus 274 ~~e~~g~~~~Ea~~~g----~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~ 348 (357)
T cd03795 274 RSEAFGIVLLEAMAFG----KPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDP-ELRERLGEAARERAE 348 (357)
T ss_pred cccccchHHHHHHHcC----CCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Confidence 599999999999995 899999989888876 46899999999999999999999865 477777888888875
Q ss_pred hC
Q 005855 545 TH 546 (673)
Q Consensus 545 ~~ 546 (673)
++
T Consensus 349 ~~ 350 (357)
T cd03795 349 EE 350 (357)
T ss_pred Hh
Confidence 53
No 68
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.85 E-value=4.2e-19 Score=186.15 Aligned_cols=273 Identities=20% Similarity=0.132 Sum_probs=191.3
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCC--cchHH-HHhhhcCCEEEEeCHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLP--SRSDL-LRAVLAADLVGFHTYDYARHFVSACT 307 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp--~r~~i-l~~ll~aDlIgF~t~~~~~~Fl~~~~ 307 (673)
..|+|++|..+..++..+.+......++.+.+|...+.... .... ....+ ...+..+|.+.+.+....+.+.+
T Consensus 80 ~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--- 155 (359)
T cd03808 80 RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTS-GGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALK--- 155 (359)
T ss_pred CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhcc-chhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHH---
Confidence 45999999887777777776656667788877765321110 0000 00011 12234678999888777666543
Q ss_pred HHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHH
Q 005855 308 RILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEK 387 (673)
Q Consensus 308 r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ 387 (673)
.... ....++.+.|+|+|.+.+.+.... ...++..|+++||+.+.||+..+++|++.
T Consensus 156 -~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 212 (359)
T cd03808 156 -LGII----------KKKKTVLIPGSGVDLDRFSPSPEP------------IPEDDPVFLFVARLLKDKGIDELLEAARI 212 (359)
T ss_pred -hcCC----------CcCceEEecCCCCChhhcCccccc------------cCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 1000 012467788999999877543210 12467899999999999999999999999
Q ss_pred HHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcC
Q 005855 388 FLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTS 467 (673)
Q Consensus 388 ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~S 467 (673)
+.+++|+ +.|+++|...... ..... ++...+. ...|.+ .|. .+++..+|+.||++++||
T Consensus 213 l~~~~~~----~~l~i~G~~~~~~-----~~~~~---~~~~~~~------~~~v~~-~g~--~~~~~~~~~~adi~i~ps 271 (359)
T cd03808 213 LKAKGPN----VRLLLVGDGDEEN-----PAAIL---EIEKLGL------EGRVEF-LGF--RDDVPELLAAADVFVLPS 271 (359)
T ss_pred HHhcCCC----eEEEEEcCCCcch-----hhHHH---HHHhcCC------cceEEE-eec--cccHHHHHHhccEEEecC
Confidence 9877765 4588787543211 11111 1222111 113554 454 578999999999999999
Q ss_pred CCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHH-Hh
Q 005855 468 LRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTH-VT 544 (673)
Q Consensus 468 l~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~-v~ 544 (673)
..||||++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|+++++++|.+++..+ +.+.++.++++++ ..
T Consensus 272 ~~e~~~~~~~Ea~~~G----~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~ 346 (359)
T cd03808 272 YREGLPRVLLEAMAMG----RPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDP-ELRARMGQAARKRAEE 346 (359)
T ss_pred cccCcchHHHHHHHcC----CCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH
Confidence 9999999999999995 899999999999888 56799999999999999999988765 4666667777777 57
Q ss_pred hCCHHHHHHHHH
Q 005855 545 THTAQEWAETFV 556 (673)
Q Consensus 545 ~~~~~~W~~~fl 556 (673)
.+++..+++.++
T Consensus 347 ~~s~~~~~~~~~ 358 (359)
T cd03808 347 EFDEEIVVKKLL 358 (359)
T ss_pred hcCHHHHHHHhh
Confidence 888888888765
No 69
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.85 E-value=2.8e-19 Score=198.58 Aligned_cols=187 Identities=11% Similarity=0.027 Sum_probs=134.1
Q ss_pred eecCcChhhhhhhhcCChhHHHHHHHHHHhcC--CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCC
Q 005855 331 FPIGIDSERFIRALEINPVQVHIKELQETFAG--RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPT 408 (673)
Q Consensus 331 iP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~--~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~ps 408 (673)
.+.|||++.|.+.... ..+... -.+ .+++++||||.+.||+..+|+|+..+.+..|++ .|+++|
T Consensus 201 ~v~GVd~~~f~~~~~~------~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~----~l~ivG--- 266 (462)
T PLN02846 201 NVHGVNPKFLEIGKLK------LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGL----EVDLYG--- 266 (462)
T ss_pred cCceechhhcCCCccc------HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCe----EEEEEC---
Confidence 4589999988754211 111111 112 346899999999999999999999998877764 588786
Q ss_pred CCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCc
Q 005855 409 RTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKG 488 (673)
Q Consensus 409 r~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g 488 (673)
+||+.++|++.+.++ +- .+++|.|..+.+ ++|+.+||||+||.+||||+|++|||||| .
T Consensus 267 --dGp~~~~L~~~a~~l----~l--------~~~vf~G~~~~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G----~ 325 (462)
T PLN02846 267 --SGEDSDEVKAAAEKL----EL--------DVRVYPGRDHAD---PLFHDYKVFLNPSTTDVVCTTTAEALAMG----K 325 (462)
T ss_pred --CCccHHHHHHHHHhc----CC--------cEEEECCCCCHH---HHHHhCCEEEECCCcccchHHHHHHHHcC----C
Confidence 456655555444433 21 234467765544 68999999999999999999999999995 8
Q ss_pred eEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHH
Q 005855 489 VLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 489 ~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~ 561 (673)
|+|+++..| .+.+ +.+|++++ |.++++++|.++|+.++++.. .+. ...++++.-+++|++.+.-
T Consensus 326 PVVa~~~~~-~~~v~~~~ng~~~~--~~~~~a~ai~~~l~~~~~~~~---~~a---~~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 326 IVVCANHPS-NEFFKQFPNCRTYD--DGKGFVRATLKALAEEPAPLT---DAQ---RHELSWEAATERFLRVADL 391 (462)
T ss_pred cEEEecCCC-cceeecCCceEecC--CHHHHHHHHHHHHccCchhHH---HHH---HHhCCHHHHHHHHHHHhcc
Confidence 888888776 5767 67888884 899999999999986542221 112 2477877777777776653
No 70
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.84 E-value=6.7e-19 Score=186.40 Aligned_cols=243 Identities=19% Similarity=0.156 Sum_probs=167.3
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|+....++ + .+..+.++.+.+|..++.... .........+.+.+-+......+.
T Consensus 87 ~~Divh~~~~~~~~~---~-~~~~~~~~v~~~h~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~~~~~------- 147 (335)
T cd03802 87 DFDIVHNHSLHLPLP---F-ARPLPVPVVTTLHGPPDPELL--------KLYYAARPDVPFVSISDAQRRPWP------- 147 (335)
T ss_pred CCCEEEecCcccchh---h-hcccCCCEEEEecCCCCcccc--------hHHHhhCcCCeEEEecHHHHhhcc-------
Confidence 459999999887766 2 234567888899987542211 123334455555544433222110
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLE 390 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~ 390 (673)
. ..++.++|+|||++.|.+. ..++.+|+++||+.+.||+..+++|+++
T Consensus 148 ------------~-~~~~~vi~ngvd~~~~~~~----------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~--- 195 (335)
T cd03802 148 ------------P-LPWVATVHNGIDLDDYPFR----------------GPKGDYLLFLGRISPEKGPHLAIRAARR--- 195 (335)
T ss_pred ------------c-ccccEEecCCcChhhCCCC----------------CCCCCEEEEEEeeccccCHHHHHHHHHh---
Confidence 0 1467899999999888641 1246789999999999999999999764
Q ss_pred hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC-C
Q 005855 391 ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL-R 469 (673)
Q Consensus 391 ~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl-~ 469 (673)
++ +.|+++|... ..+ .+...+.+... ++ ..|+ +.|.++.+++..+|+.||++++||. .
T Consensus 196 --~~----~~l~i~G~~~---~~~--~~~~~~~~~~~-~~--------~~v~-~~G~~~~~~~~~~~~~~d~~v~ps~~~ 254 (335)
T cd03802 196 --AG----IPLKLAGPVS---DPD--YFYREIAPELL-DG--------PDIE-YLGEVGGAEKAELLGNARALLFPILWE 254 (335)
T ss_pred --cC----CeEEEEeCCC---CHH--HHHHHHHHhcc-cC--------CcEE-EeCCCCHHHHHHHHHhCcEEEeCCccc
Confidence 23 4588787532 111 22222222210 11 1355 5789999999999999999999997 5
Q ss_pred cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHH-HhhC
Q 005855 470 DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTH-VTTH 546 (673)
Q Consensus 470 EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~-v~~~ 546 (673)
||||++++|||||| .|+|+|+.+|..+.+ |.+|+++++ +++++++|.+++.++.+ ++++. .+++
T Consensus 255 E~~~~~~lEAma~G----~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~~~~~~-------~~~~~~~~~~ 321 (335)
T cd03802 255 EPFGLVMIEAMACG----TPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARADRLDRA-------ACRRRAERRF 321 (335)
T ss_pred CCcchHHHHHHhcC----CCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHhccHHH-------HHHHHHHHhC
Confidence 99999999999995 899999999999888 347999987 99999999999765431 12222 3667
Q ss_pred CHHHHHHHHHHH
Q 005855 547 TAQEWAETFVSE 558 (673)
Q Consensus 547 ~~~~W~~~fl~~ 558 (673)
+++.-++++++.
T Consensus 322 s~~~~~~~~~~~ 333 (335)
T cd03802 322 SAARMVDDYLAL 333 (335)
T ss_pred CHHHHHHHHHHH
Confidence 777777766553
No 71
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.84 E-value=1.8e-18 Score=195.36 Aligned_cols=264 Identities=10% Similarity=0.074 Sum_probs=161.9
Q ss_pred CCCEEEEeCccch-hH--HHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHH--
Q 005855 231 DGDVVWCHDYHLM-FL--PKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSA-- 305 (673)
Q Consensus 231 ~~DvVwvHDyhl~-ll--p~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~-- 305 (673)
+.|+||+|..-.+ .. +....+++. +++..+||.|+.+--...+..-+..+. .++.+|+..
T Consensus 434 ~PDVVHLatP~~LGw~~~Glr~ArKl~--PVVasyHTny~eYl~~y~~g~L~~~ll-------------k~l~~~v~r~h 498 (794)
T PLN02501 434 DADIAILEEPEHLNWYHHGKRWTDKFN--HVVGVVHTNYLEYIKREKNGALQAFFV-------------KHINNWVTRAY 498 (794)
T ss_pred CCCEEEECCchhhccHHHHHHHHHHcC--CeEEEEeCCcHHHHhHhcchhHHHHHH-------------HHHHHHHHHhh
Confidence 5699999885444 33 233333333 588889999985322222221111111 122223322
Q ss_pred HHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhc---CCceEEEeecccccCChHHHH
Q 005855 306 CTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA---GRKVMLGVDRLDMIKGIPQKL 382 (673)
Q Consensus 306 ~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~iIl~VgRLd~~KGi~~~L 382 (673)
|+.++.++.... .+. ...+. ..+|||++.|.+.... ... ..++ ..+.+++||||.+.||+..+|
T Consensus 499 cD~VIaPS~atq--~L~--~~vI~-nVnGVDte~F~P~~r~-------~~~-r~lgi~~~~kgiLfVGRLa~EKGld~LL 565 (794)
T PLN02501 499 CHKVLRLSAATQ--DLP--KSVIC-NVHGVNPKFLKIGEKV-------AEE-RELGQQAFSKGAYFLGKMVWAKGYRELI 565 (794)
T ss_pred CCEEEcCCHHHH--Hhc--cccee-ecccccccccCCcchh-------HHH-HhcCCccccCceEEEEcccccCCHHHHH
Confidence 344433221000 111 11111 1259999999864321 011 1221 235589999999999999999
Q ss_pred HHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCE
Q 005855 383 LAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDV 462 (673)
Q Consensus 383 ~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv 462 (673)
+|+..+.++.|+ +.|+++| +||+..+++ +++.+.+. .|.| .|.. ++...+|+.+||
T Consensus 566 eAla~L~~~~pn----vrLvIVG-----DGP~reeLe----~la~eLgL--------~V~F-LG~~--dd~~~lyasaDV 621 (794)
T PLN02501 566 DLLAKHKNELDG----FNLDVFG-----NGEDAHEVQ----RAAKRLDL--------NLNF-LKGR--DHADDSLHGYKV 621 (794)
T ss_pred HHHHHHHhhCCC----eEEEEEc-----CCccHHHHH----HHHHHcCC--------EEEe-cCCC--CCHHHHHHhCCE
Confidence 999998877775 4588887 345444444 44433221 2554 4443 334579999999
Q ss_pred EEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005855 463 ALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNF 540 (673)
Q Consensus 463 ~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~ 540 (673)
||+||.+||||+|++|||||| .|+|+++..|.. .+ |.+|++. .|.++++++|.++|.+++ ++..+ .
T Consensus 622 FVlPS~sEgFGlVlLEAMA~G----lPVVATd~pG~e-~V~~g~nGll~--~D~EafAeAI~~LLsd~~-~rl~~-~--- 689 (794)
T PLN02501 622 FINPSISDVLCTATAEALAMG----KFVVCADHPSNE-FFRSFPNCLTY--KTSEDFVAKVKEALANEP-QPLTP-E--- 689 (794)
T ss_pred EEECCCcccchHHHHHHHHcC----CCEEEecCCCCc-eEeecCCeEec--CCHHHHHHHHHHHHhCch-hhhHH-H---
Confidence 999999999999999999995 899999988743 34 4566654 799999999999999775 22221 1
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 005855 541 THVTTHTAQEWAETFVSEL 559 (673)
Q Consensus 541 ~~v~~~~~~~W~~~fl~~L 559 (673)
...++++..-++++++.-
T Consensus 690 -a~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 690 -QRYNLSWEAATQRFMEYS 707 (794)
T ss_pred -HHhhCCHHHHHHHHHHhh
Confidence 133677777777776543
No 72
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.83 E-value=1.3e-18 Score=187.19 Aligned_cols=248 Identities=20% Similarity=0.171 Sum_probs=169.8
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCC----ch-hhhhcCCcc-------------hHHHHhhhcCCEE
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFP----SS-EIHRTLPSR-------------SDLLRAVLAADLV 291 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP----~~-e~fr~lp~r-------------~~il~~ll~aDlI 291 (673)
.+.|+|+++...... ..+ ..+..+..+++|.|.+ .. ......+.. ......+..+|.|
T Consensus 82 ~~~D~v~~~~~~~~~--~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 157 (351)
T cd03804 82 SGYDLVISSSHAVAK--GVI--TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYF 157 (351)
T ss_pred cCCCEEEEcCcHHhc--ccc--CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcCCCEE
Confidence 356999876532222 111 3456777888898621 11 111111110 0112234678888
Q ss_pred EEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeec
Q 005855 292 GFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDR 371 (673)
Q Consensus 292 gF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgR 371 (673)
...+....+.+.+ ..+ .+..++|+|+|.+.|.+.. ..+++++++||
T Consensus 158 i~~S~~~~~~~~~----~~~--------------~~~~vi~~~~d~~~~~~~~----------------~~~~~il~~G~ 203 (351)
T cd03804 158 IANSRFVARRIKK----YYG--------------RDATVIYPPVDTDRFTPAE----------------EKEDYYLSVGR 203 (351)
T ss_pred EECCHHHHHHHHH----HhC--------------CCcEEECCCCCHhhcCcCC----------------CCCCEEEEEEc
Confidence 8887766555432 111 1346789999998875421 23567999999
Q ss_pred ccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHH
Q 005855 372 LDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFP 451 (673)
Q Consensus 372 Ld~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~ 451 (673)
+.+.||++.+++|++++ | +.|+++|. +++.+.++ + ... ..|. +.|.++.+
T Consensus 204 ~~~~K~~~~li~a~~~~----~-----~~l~ivG~-----g~~~~~l~----~---~~~--------~~V~-~~g~~~~~ 253 (351)
T cd03804 204 LVPYKRIDLAIEAFNKL----G-----KRLVVIGD-----GPELDRLR----A---KAG--------PNVT-FLGRVSDE 253 (351)
T ss_pred CccccChHHHHHHHHHC----C-----CcEEEEEC-----ChhHHHHH----h---hcC--------CCEE-EecCCCHH
Confidence 99999999999999865 3 34777874 33332332 2 111 2365 46899999
Q ss_pred HHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCH
Q 005855 452 ALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSP 529 (673)
Q Consensus 452 el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~ 529 (673)
++.++|+.||++++||. ||||++++|||||| .|+|+|..+|..+.+ +.+|++++|.|++++|++|.++++++.
T Consensus 254 ~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G----~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~ 328 (351)
T cd03804 254 ELRDLYARARAFLFPAE-EDFGIVPVEAMASG----TPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNED 328 (351)
T ss_pred HHHHHHHhCCEEEECCc-CCCCchHHHHHHcC----CCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcc
Confidence 99999999999999999 99999999999995 899999999988877 468999999999999999999998774
Q ss_pred HHHHHHHHHhhHHHhhCCHHHHHHH
Q 005855 530 EEREKRHWHNFTHVTTHTAQEWAET 554 (673)
Q Consensus 530 ~er~~r~~~~~~~v~~~~~~~W~~~ 554 (673)
...+.+++.+.++++.+..++
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~ 349 (351)
T cd03804 329 ----FDPQAIRAHAERFSESRFREK 349 (351)
T ss_pred ----cCHHHHHHHHHhcCHHHHHHH
Confidence 122344555666776666554
No 73
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.82 E-value=1.9e-18 Score=184.74 Aligned_cols=269 Identities=16% Similarity=0.043 Sum_probs=178.5
Q ss_pred CCEEEEeCccch--hHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHH-----HhhhcCCEEEEeCHHHHHHHHH
Q 005855 232 GDVVWCHDYHLM--FLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLL-----RAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 232 ~DvVwvHDyhl~--llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il-----~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
.|+++||..... .+..+++. .+.++.+.+|..-.....+.. + ...++ ..+..+|.|.+.+....+.+.
T Consensus 85 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~- 159 (363)
T cd04955 85 RDIDHVHALGPAIAPFLPLLRL--KGKKVVVNMDGLEWKRAKWGR-P-AKRYLKFGEKLAVKFADRLIADSPGIKEYLK- 159 (363)
T ss_pred CCeEEEEecCccHHHHHHHHHh--cCCCEEEEccCcceeeccccc-c-hhHHHHHHHHHHHhhccEEEeCCHHHHHHHH-
Confidence 456666654433 33333333 367888888853111111110 0 01111 234568888887765444332
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLA 384 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~A 384 (673)
...+ ... .++|+|+|...+.+. . ..... ....+++.|+++||+.+.||+..+++|
T Consensus 160 ---~~~~------------~~~--~~i~ngv~~~~~~~~---~---~~~~~--~~~~~~~~i~~~G~~~~~Kg~~~li~a 214 (363)
T cd04955 160 ---EKYG------------RDS--TYIPYGADHVVSSEE---D---EILKK--YGLEPGRYYLLVGRIVPENNIDDLIEA 214 (363)
T ss_pred ---HhcC------------CCC--eeeCCCcChhhcchh---h---hhHHh--cCCCCCcEEEEEecccccCCHHHHHHH
Confidence 1111 111 789999998776430 0 11111 112355678999999999999999999
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVAL 464 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~v 464 (673)
+.++.. ++.|+++|..... ..+.+.+.+. ++.. ..|+ +.|.++.+++..+|+.||+++
T Consensus 215 ~~~l~~-------~~~l~ivG~~~~~-----~~~~~~~~~~-------~~~~--~~V~-~~g~~~~~~~~~~~~~ad~~v 272 (363)
T cd04955 215 FSKSNS-------GKKLVIVGNADHN-----TPYGKLLKEK-------AAAD--PRII-FVGPIYDQELLELLRYAALFY 272 (363)
T ss_pred HHhhcc-------CceEEEEcCCCCc-----chHHHHHHHH-------hCCC--CcEE-EccccChHHHHHHHHhCCEEE
Confidence 987632 4668888854211 1233333321 1111 1355 579999999999999999999
Q ss_pred EcCCC-cCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH
Q 005855 465 VTSLR-DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV 543 (673)
Q Consensus 465 v~Sl~-EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v 543 (673)
+||.. ||||++++|||||| .|+|+|..+|..+.++.+|.+++|.|. +|++|.++++++ +.+..+.+++++.+
T Consensus 273 ~ps~~~e~~~~~~~EAma~G----~PvI~s~~~~~~e~~~~~g~~~~~~~~--l~~~i~~l~~~~-~~~~~~~~~~~~~~ 345 (363)
T cd04955 273 LHGHSVGGTNPSLLEAMAYG----CPVLASDNPFNREVLGDKAIYFKVGDD--LASLLEELEADP-EEVSAMAKAARERI 345 (363)
T ss_pred eCCccCCCCChHHHHHHHcC----CCEEEecCCccceeecCCeeEecCchH--HHHHHHHHHhCH-HHHHHHHHHHHHHH
Confidence 99999 99999999999995 899999999988888778999998776 999999999976 45666677778777
Q ss_pred h-hCCHHHHHHHHHHHH
Q 005855 544 T-THTAQEWAETFVSEL 559 (673)
Q Consensus 544 ~-~~~~~~W~~~fl~~L 559 (673)
. .++++.-+++|++.+
T Consensus 346 ~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 346 REKYTWEKIADQYEELY 362 (363)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 5 488888787777654
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.81 E-value=3.2e-18 Score=178.67 Aligned_cols=246 Identities=19% Similarity=0.152 Sum_probs=167.1
Q ss_pred CCCEEEEeCc-cchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDY-HLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 231 ~~DvVwvHDy-hl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
..|+|++|++ ...++..+.+ +. +.++.+.+|..++..... ..+........+..+|.+.+.+......+.+ .
T Consensus 81 ~~dii~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~ 153 (353)
T cd03811 81 KPDVVISHLTTTPNVLALLAA-RL-GTKLIVWEHNSLSLELKR-KLRLLLLIRKLYRRADKIVAVSEGVKEDLLK----L 153 (353)
T ss_pred CCCEEEEcCccchhHHHHHHh-hc-CCceEEEEcCcchhhhcc-chhHHHHHHhhccccceEEEeccchhhhHHH----h
Confidence 4599999998 4444444433 33 789999999876532211 1111112334456788888887765555432 1
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFL 389 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll 389 (673)
.+. ...++.++|+|+|.+.+.+..... . .. ....++.+|+++||+++.||+..+++|+..+.
T Consensus 154 ~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~-----~-~~-~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~ 215 (353)
T cd03811 154 LGI-----------PPDKIEVIYNPIDIEEIRALAEEP-----L-EL-GIPPDGPVILAVGRLSPQKGFDTLIRAFALLR 215 (353)
T ss_pred hcC-----------CccccEEecCCcChhhcCcccchh-----h-hc-CCCCCceEEEEEecchhhcChHHHHHHHHHhh
Confidence 111 135788999999998876532110 0 00 11246789999999999999999999999998
Q ss_pred HhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCC
Q 005855 390 EENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLR 469 (673)
Q Consensus 390 ~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~ 469 (673)
++.++ +.|+++|.+ +....++ +++.+.+. . ..|. +.+.+ +++..+|+.||+++.||..
T Consensus 216 ~~~~~----~~l~i~G~~-----~~~~~~~----~~~~~~~~----~--~~v~-~~g~~--~~~~~~~~~~d~~i~ps~~ 273 (353)
T cd03811 216 KEGPD----ARLVILGDG-----PLREELE----ALAKELGL----A--DRVH-FLGFQ--SNPYPYLKAADLFVLSSRY 273 (353)
T ss_pred hcCCC----ceEEEEcCC-----ccHHHHH----HHHHhcCC----C--ccEE-Eeccc--CCHHHHHHhCCEEEeCccc
Confidence 77654 458877742 2222333 34333331 1 1244 45554 4688999999999999999
Q ss_pred cCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHH---HHHHHHhcC
Q 005855 470 DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVA---NAIARALNM 527 (673)
Q Consensus 470 EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA---~aI~~aL~m 527 (673)
||||++++|||+|| .|+|+|+.+|..+.+ +.+|+++++.|.++++ ++|...+..
T Consensus 274 e~~~~~~~Ea~~~G----~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 274 EGFPNVLLEAMALG----TPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CCCCcHHHHHHHhC----CCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 99999999999995 899999999988888 5679999999999994 555555544
No 75
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.80 E-value=9.1e-18 Score=179.39 Aligned_cols=196 Identities=21% Similarity=0.323 Sum_probs=148.0
Q ss_pred eEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccc--cCChHHHHHHHHHHHHh-CcCccCce
Q 005855 326 TRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDM--IKGIPQKLLAFEKFLEE-NSDWRGKV 399 (673)
Q Consensus 326 ~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~--~KGi~~~L~Af~~ll~~-~P~~~~~v 399 (673)
.++.++|+|||.+.|.+... ...+..+ .++++++++++... .||+..+++|++.+.++ .| ++
T Consensus 159 ~~~~vi~ngi~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~----~~ 226 (365)
T cd03825 159 IPIEVIPNGIDTTIFRPRDK--------REARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKD----DI 226 (365)
T ss_pred CceEEeCCCCcccccCCCcH--------HHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCC----Ce
Confidence 47889999999988754311 1122222 34566777777654 89999999999988665 33 46
Q ss_pred EEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCC-HHHHHHHHHHcCEEEEcCCCcCCChhHHH
Q 005855 400 VLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLD-FPALCALYAVTDVALVTSLRDGMNLVSYE 478 (673)
Q Consensus 400 ~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~-~~el~aly~~ADv~vv~Sl~EGf~Lv~lE 478 (673)
.++++|... ... . . ..+ ..|. +.|.++ .+++..+|+.||++++||..||||++++|
T Consensus 227 ~~~i~G~~~----~~~---~----~---~~~--------~~v~-~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~E 283 (365)
T cd03825 227 ELVVFGASD----PEI---P----P---DLP--------FPVH-YLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIE 283 (365)
T ss_pred EEEEeCCCc----hhh---h----c---cCC--------CceE-ecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHH
Confidence 687776432 100 0 0 111 1244 467887 88999999999999999999999999999
Q ss_pred HHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHH
Q 005855 479 FVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETF 555 (673)
Q Consensus 479 amA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~f 555 (673)
||+|+ .|+|+|+.+|..+.+ +.+|+++++.|++++|++|.++++.+ +++.++.+++++.+ .+++++..+++|
T Consensus 284 am~~g----~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~ 358 (365)
T cd03825 284 ALACG----TPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADP-DEREELGEAARELAENEFDSRVQAKRY 358 (365)
T ss_pred HHhcC----CCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99995 899999999988888 34799999999999999999999865 46667777778777 468999999988
Q ss_pred HHHHHH
Q 005855 556 VSELND 561 (673)
Q Consensus 556 l~~L~~ 561 (673)
++.+++
T Consensus 359 ~~~y~~ 364 (365)
T cd03825 359 LSLYEE 364 (365)
T ss_pred HHHHhh
Confidence 876653
No 76
>PLN02275 transferase, transferring glycosyl groups
Probab=99.79 E-value=1.6e-17 Score=181.42 Aligned_cols=240 Identities=12% Similarity=0.010 Sum_probs=159.0
Q ss_pred CCCCEEEEeCccchh--HHHHHHhhCCCCeEEeEeccCCCchhhhhc-C---Cc----chHHHHh-hhcCCEEEEeCHHH
Q 005855 230 KDGDVVWCHDYHLMF--LPKCLKEYNSDMKVGWFLHTPFPSSEIHRT-L---PS----RSDLLRA-VLAADLVGFHTYDY 298 (673)
Q Consensus 230 ~~~DvVwvHDyhl~l--lp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~-l---p~----r~~il~~-ll~aDlIgF~t~~~ 298 (673)
...|+|++|..+.+. ++..+-.+..+.++.+.+|..+.. .+.. . +. ...+.+. ...+|.|...+...
T Consensus 99 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~ 176 (371)
T PLN02275 99 PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYT--LLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTKAM 176 (371)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHH--HHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCHHH
Confidence 356999999876532 233333333467888888865311 1100 0 00 0111111 23578888888765
Q ss_pred HHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCCh
Q 005855 299 ARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGI 378 (673)
Q Consensus 299 ~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi 378 (673)
.+...+ .. |.. +.++|+|+ .+.|.+.... ..++ .+...+|+++||+.+.||+
T Consensus 177 ~~~l~~----~~------------g~~--i~vi~n~~-~~~f~~~~~~-------~~~~--~~~~~~i~~~grl~~~k~~ 228 (371)
T PLN02275 177 QHELDQ----NW------------GIR--ATVLYDQP-PEFFRPASLE-------IRLR--PNRPALVVSSTSWTPDEDF 228 (371)
T ss_pred HHHHHH----hc------------CCC--eEEECCCC-HHHcCcCCch-------hccc--CCCcEEEEEeCceeccCCH
Confidence 544321 11 111 67889984 5777643211 0111 1234678899999999999
Q ss_pred HHHHHHHHHHHH-----------------hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 379 PQKLLAFEKFLE-----------------ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 379 ~~~L~Af~~ll~-----------------~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
..+++|+..+.. ++| ++.|+++|. |++.+++++.++ +.+ ...+
T Consensus 229 ~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~----~i~l~ivG~-----G~~~~~l~~~~~----~~~-------l~~v 288 (371)
T PLN02275 229 GILLEAAVMYDRRVAARLNESDSASGKQSLYP----RLLFIITGK-----GPQKAMYEEKIS----RLN-------LRHV 288 (371)
T ss_pred HHHHHHHHHHHhhhhhccccccccccccccCC----CeEEEEEeC-----CCCHHHHHHHHH----HcC-------CCce
Confidence 999999988752 234 467998884 444444444443 322 1247
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcC---CCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHH
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTS---LRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITE 516 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~S---l~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~ 516 (673)
+++.+.++.++++.+|+.||++|+|+ ..|||+++++|||||| .|+|+|..+|..+.+ |.+|++|+ |+++
T Consensus 289 ~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G----~PVVa~~~gg~~eiv~~g~~G~lv~--~~~~ 362 (371)
T PLN02275 289 AFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCG----LPVCAVSYSCIGELVKDGKNGLLFS--SSSE 362 (371)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCC----CCEEEecCCChHHHccCCCCeEEEC--CHHH
Confidence 77777889999999999999999853 2489999999999995 899999999988888 67899997 7999
Q ss_pred HHHHHHHHh
Q 005855 517 VANAIARAL 525 (673)
Q Consensus 517 lA~aI~~aL 525 (673)
+|++|.++|
T Consensus 363 la~~i~~l~ 371 (371)
T PLN02275 363 LADQLLELL 371 (371)
T ss_pred HHHHHHHhC
Confidence 999998875
No 77
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.3e-16 Score=175.78 Aligned_cols=319 Identities=21% Similarity=0.188 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCEEEEeCccchhHHHHHHhh---CCCCeEEeEeccC-----CC-chhhhhcCCc--
Q 005855 211 FAAYIKANQMFADVVNKHY--KDGDVVWCHDYHLMFLPKCLKEY---NSDMKVGWFLHTP-----FP-SSEIHRTLPS-- 277 (673)
Q Consensus 211 w~~Y~~vN~~fA~~i~~~~--~~~DvVwvHDyhl~llp~~Lr~~---~~~~~Ig~flH~P-----fP-~~e~fr~lp~-- 277 (673)
+..+....++-++-+-... -.+||||+||||+-++|.++++. ...++.+|++|.- |+ .....-.||.
T Consensus 108 ~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~ 187 (487)
T COG0297 108 AERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEA 187 (487)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHH
Confidence 4455444444433332211 25799999999999999999997 7789999999943 23 1111223341
Q ss_pred -c----------hHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcC
Q 005855 278 -R----------SDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEI 346 (673)
Q Consensus 278 -r----------~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~ 346 (673)
. .-+-.++..||.|.--++.|+..... ...| +.-...+.+ +.-++.-|=||||.+...+....
T Consensus 188 ~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t---~~~g-~gl~g~l~~--~~~~l~GI~NgiD~~~wnp~~d~ 261 (487)
T COG0297 188 YASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYT---PEYG-EGLEGLLSW--RSGKLSGILNGIDYDLWNPETDP 261 (487)
T ss_pred hhhceeeecCcchhhhhhheeccEEEEECHHHHHhhcc---cccc-ccchhhhhh--ccccEEEEEeeEEecccCccccc
Confidence 1 23345678889998888888876541 0000 000011111 22467778888987766553211
Q ss_pred -------Ch----hHHHHHHHHHHh--c---CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCC
Q 005855 347 -------NP----VQVHIKELQETF--A---GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRT 410 (673)
Q Consensus 347 -------~~----~~~~~~~lr~~~--~---~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~ 410 (673)
.+ -.+....|.+.+ . +.+++..|+||+..||++.+++|+..++++. ..||++|.+.
T Consensus 262 ~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~------~~~vilG~gd-- 333 (487)
T COG0297 262 YIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG------WQLVLLGTGD-- 333 (487)
T ss_pred chhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC------ceEEEEecCc--
Confidence 00 111223344554 2 5689999999999999999999999999876 3478787531
Q ss_pred ChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceE
Q 005855 411 DVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVL 490 (673)
Q Consensus 411 ~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~l 490 (673)
+ .++..+..++.++..++ .+.-..+..-...+|+.||++++||..||+||+-++||.-| .++
T Consensus 334 --~---~le~~~~~la~~~~~~~---------~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryG----tvp 395 (487)
T COG0297 334 --P---ELEEALRALASRHPGRV---------LVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYG----TLP 395 (487)
T ss_pred --H---HHHHHHHHHHHhcCceE---------EEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcC----Ccc
Confidence 2 56777888887766432 12234466777889999999999999999999999999985 899
Q ss_pred EEeCCCCchhhc-c---------CceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH--hhCCHHHHHHHHHHH
Q 005855 491 ILSEFAGAAQSL-G---------AGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV--TTHTAQEWAETFVSE 558 (673)
Q Consensus 491 VlSe~aG~~~~l-g---------~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v--~~~~~~~W~~~fl~~ 558 (673)
|+.+.+|.++.+ . .+|+++.|.|+++++.+|.+|+..-..... .++..+... ..++++.=+++|+..
T Consensus 396 Iv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~-~w~~~~~~~m~~d~sw~~sa~~y~~l 474 (487)
T COG0297 396 IVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL-LWRKVQPNAMGADFSWDLSAKEYVEL 474 (487)
T ss_pred eEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHH-HHHHHHHhhcccccCchhHHHHHHHH
Confidence 999999999987 2 468999999999999999999975331111 022222222 355555556666555
Q ss_pred HHHh
Q 005855 559 LNDT 562 (673)
Q Consensus 559 L~~~ 562 (673)
-+.+
T Consensus 475 Y~~~ 478 (487)
T COG0297 475 YKPL 478 (487)
T ss_pred HHHH
Confidence 4443
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.76 E-value=1.6e-16 Score=176.19 Aligned_cols=287 Identities=16% Similarity=0.108 Sum_probs=176.5
Q ss_pred HHHHHhcCCCCEEEEeCccchhHHHHHHh-hCCCCeEEeEeccCCC-chhhhhcCCcchHHHHh-hhcCCEEEEeCHHHH
Q 005855 223 DVVNKHYKDGDVVWCHDYHLMFLPKCLKE-YNSDMKVGWFLHTPFP-SSEIHRTLPSRSDLLRA-VLAADLVGFHTYDYA 299 (673)
Q Consensus 223 ~~i~~~~~~~DvVwvHDyhl~llp~~Lr~-~~~~~~Ig~flH~PfP-~~e~fr~lp~r~~il~~-ll~aDlIgF~t~~~~ 299 (673)
.++++..+| |+|++|.+.++ |.++.. +..++++.+..|.-.. +...++.++ .+.+. +..+|.|..++....
T Consensus 117 ~~~l~~~~P-d~v~~~~~~~~--~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~---~~~r~~~~~~d~ii~~S~~~~ 190 (425)
T PRK05749 117 RRFLRFWRP-KLVIIMETELW--PNLIAELKRRGIPLVLANARLSERSFKRYQKFK---RFYRLLFKNIDLVLAQSEEDA 190 (425)
T ss_pred HHHHHhhCC-CEEEEEecchh--HHHHHHHHHCCCCEEEEeccCChhhHHHHHHHH---HHHHHHHHhCCEEEECCHHHH
Confidence 444555665 89998877655 444433 2345666665543222 222222221 22222 335899999998887
Q ss_pred HHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-cCCceEEEeecccccCCh
Q 005855 300 RHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF-AGRKVMLGVDRLDMIKGI 378 (673)
Q Consensus 300 ~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~~~~iIl~VgRLd~~KGi 378 (673)
+.+.+ +|.. .. +.++|++ +.+.+.... .......+++.+ +++++|+++++. .|+.
T Consensus 191 ~~l~~-----~g~~-----------~~-i~vi~n~-~~d~~~~~~----~~~~~~~~r~~~~~~~~vil~~~~~--~~~~ 246 (425)
T PRK05749 191 ERFLA-----LGAK-----------NE-VTVTGNL-KFDIEVPPE----LAARAATLRRQLAPNRPVWIAASTH--EGEE 246 (425)
T ss_pred HHHHH-----cCCC-----------CC-cEecccc-cccCCCChh----hHHHHHHHHHHhcCCCcEEEEeCCC--chHH
Confidence 77642 2321 22 5566763 333322111 112233456666 578889999875 6889
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccc---cCC--C-CcccEEEeCCCCCHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGR---FGT--L-TAVPIHHLDRSLDFPA 452 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~---~g~--~-~~~pV~~~~~~v~~~e 452 (673)
..+++|+.++.+++|++ .|+++| ++++. .+++++++.+.+-. |.. . +-...+++.+ +..+
T Consensus 247 ~~ll~A~~~l~~~~~~~----~liivG-----~g~~r---~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~--~~~e 312 (425)
T PRK05749 247 ELVLDAHRALLKQFPNL----LLILVP-----RHPER---FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGD--TMGE 312 (425)
T ss_pred HHHHHHHHHHHHhCCCc----EEEEcC-----CChhh---HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEe--cHHH
Confidence 99999999998888865 477775 34443 12344444332211 100 0 0000122222 3579
Q ss_pred HHHHHHHcCEEEE-cCCCcCCChhHHHHHhhccCCCceEEEeCCCCch-h---hccCceEEECCCCHHHHHHHHHHHhcC
Q 005855 453 LCALYAVTDVALV-TSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA-Q---SLGAGAILVNPWNITEVANAIARALNM 527 (673)
Q Consensus 453 l~aly~~ADv~vv-~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~-~---~lg~~gllVnP~D~~~lA~aI~~aL~m 527 (673)
+..+|+.|||+++ +|+.||+|++++|||||| .|+|++...|.. + .+..+|.++.|.|++++|++|.+++++
T Consensus 313 l~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G----~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 313 LGLLYAIADIAFVGGSLVKRGGHNPLEPAAFG----VPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHHHhCCEEEECCCcCCCCCCCHHHHHHhC----CCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcC
Confidence 9999999999666 678899999999999995 888887654332 2 223578888899999999999999985
Q ss_pred CHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHH
Q 005855 528 SPEEREKRHWHNFTHVTTHTAQEWAETFVSELN 560 (673)
Q Consensus 528 ~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~ 560 (673)
+ +.+.++++++++++.++. .=.+++++.+.
T Consensus 389 ~-~~~~~m~~~a~~~~~~~~--~~~~~~~~~l~ 418 (425)
T PRK05749 389 P-DARQAYGEAGVAFLKQNQ--GALQRTLQLLE 418 (425)
T ss_pred H-HHHHHHHHHHHHHHHhCc--cHHHHHHHHHH
Confidence 4 577888888899987762 33445555554
No 79
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.74 E-value=2.8e-17 Score=158.59 Aligned_cols=156 Identities=27% Similarity=0.346 Sum_probs=120.1
Q ss_pred cCCceEEEeecccccCChHHHHHHHHHHHHh-CcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcc
Q 005855 361 AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEE-NSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAV 439 (673)
Q Consensus 361 ~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~-~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~ 439 (673)
.++++|+++||+++.||+..+++|+..+.++ .++ +.|+++|. ++.. ..+..++...+. . .
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~----~~l~i~G~-----~~~~----~~~~~~~~~~~~----~--~ 73 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPN----YKLVIVGD-----GEYK----KELKNLIEKLNL----K--E 73 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTT----EEEEEESH-----CCHH----HHHHHHHHHTTC----G--T
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCC----eEEEEEcc-----cccc----cccccccccccc----c--c
Confidence 5789999999999999999999999999875 554 55777762 1222 223333333221 1 1
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHH
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEV 517 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~l 517 (673)
.+.+ .+.++.+++.++|+.||++|.||..||||++++|||+|+ .|+|+|..+|..+.+ +.+|+++++.|++++
T Consensus 74 ~i~~-~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g----~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l 148 (172)
T PF00534_consen 74 NIIF-LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACG----CPVIASDIGGNNEIINDGVNGFLFDPNDIEEL 148 (172)
T ss_dssp TEEE-EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-----EEEEESSTHHHHHSGTTTSEEEESTTSHHHH
T ss_pred cccc-cccccccccccccccceeccccccccccccccccccccc----cceeeccccCCceeeccccceEEeCCCCHHHH
Confidence 3555 467779999999999999999999999999999999995 899999988888887 567899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhH
Q 005855 518 ANAIARALNMSPEEREKRHWHNFT 541 (673)
Q Consensus 518 A~aI~~aL~m~~~er~~r~~~~~~ 541 (673)
+++|.++++++ +.+..+.+++++
T Consensus 149 ~~~i~~~l~~~-~~~~~l~~~~~~ 171 (172)
T PF00534_consen 149 ADAIEKLLNDP-ELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCH-HHHHHHHHHhcC
Confidence 99999999976 455555555554
No 80
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.64 E-value=5.8e-14 Score=153.41 Aligned_cols=264 Identities=17% Similarity=0.134 Sum_probs=164.4
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc-hHHHHhhhcCCEEEEeCHHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR-SDLLRAVLAADLVGFHTYDYARHFVSACTRI 309 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r-~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~ 309 (673)
+..++|.+..-...+... .+..++++-+|-.|+..... -+.. ......+..||+|...+....+.+..
T Consensus 102 ~~~i~~~~~P~~~~~~~~----~~~~~~Vyd~~D~~~~~~~~--~~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~----- 170 (373)
T cd04950 102 GRPILWYYTPYTLPVAAL----LQASLVVYDCVDDLSAFPGG--PPELLEAERRLLKRADLVFTTSPSLYEAKRR----- 170 (373)
T ss_pred CCcEEEEeCccHHHHHhh----cCCCeEEEEcccchhccCCC--CHHHHHHHHHHHHhCCEEEECCHHHHHHHhh-----
Confidence 556788876555544444 45667777666444322110 0000 11223356789998877655433211
Q ss_pred hccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHH
Q 005855 310 LGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFL 389 (673)
Q Consensus 310 l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll 389 (673)
+ + .++.++|+|+|.+.|.+....+.. .+.+. ..++++|+|+|++.+.+++. +|.++ .
T Consensus 171 -----------~-~--~~i~~i~ngvd~~~f~~~~~~~~~---~~~~~--~~~~~~i~y~G~l~~~~d~~-ll~~l---a 227 (373)
T cd04950 171 -----------L-N--PNVVLVPNGVDYEHFAAARDPPPP---PADLA--ALPRPVIGYYGAIAEWLDLE-LLEAL---A 227 (373)
T ss_pred -----------C-C--CCEEEcccccCHHHhhcccccCCC---hhHHh--cCCCCEEEEEeccccccCHH-HHHHH---H
Confidence 1 1 367889999999999764322110 01111 14678999999999966654 44433 3
Q ss_pred HhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC-
Q 005855 390 EENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL- 468 (673)
Q Consensus 390 ~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl- 468 (673)
+.+|++ .|++||... ...+ ..++ . ....|++ .|.++.+++.++|+.|||+++|+.
T Consensus 228 ~~~p~~----~~vliG~~~--~~~~-------~~~~----~------~~~nV~~-~G~~~~~~l~~~l~~~Dv~l~P~~~ 283 (373)
T cd04950 228 KARPDW----SFVLIGPVD--VSID-------PSAL----L------RLPNVHY-LGPKPYKELPAYLAGFDVAILPFRL 283 (373)
T ss_pred HHCCCC----EEEEECCCc--CccC-------hhHh----c------cCCCEEE-eCCCCHHHHHHHHHhCCEEecCCcc
Confidence 456765 488787431 0011 0111 0 0123664 689999999999999999999986
Q ss_pred ----CcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHh
Q 005855 469 ----RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVT 544 (673)
Q Consensus 469 ----~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~ 544 (673)
.+++++..+|||||| .|+|+|....+.+.. . +..+.+.|+++++++|.++|..+..++..+ ..+.++
T Consensus 284 ~~~~~~~~P~Kl~EylA~G----~PVVat~~~~~~~~~-~-~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~---~~~~~~ 354 (373)
T cd04950 284 NELTRATSPLKLFEYLAAG----KPVVATPLPEVRRYE-D-EVVLIADDPEEFVAAIEKALLEDGPARERR---RLRLAA 354 (373)
T ss_pred chhhhcCCcchHHHHhccC----CCEEecCcHHHHhhc-C-cEEEeCCCHHHHHHHHHHHHhcCCchHHHH---HHHHHH
Confidence 357899999999995 888888765544332 3 344446799999999999876554333332 223688
Q ss_pred hCCHHHHHHHHHHHHHH
Q 005855 545 THTAQEWAETFVSELND 561 (673)
Q Consensus 545 ~~~~~~W~~~fl~~L~~ 561 (673)
+||++.=++.++..|.+
T Consensus 355 ~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 355 QNSWDARAAEMLEALQE 371 (373)
T ss_pred HCCHHHHHHHHHHHHHh
Confidence 89888888888766653
No 81
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.61 E-value=1.6e-14 Score=150.84 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=136.4
Q ss_pred eeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-cCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCc
Q 005855 320 EDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF-AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGK 398 (673)
Q Consensus 320 ~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~ 398 (673)
+-.-.+.++.++||-|+++.|.|.+.. +. .+...|+.++||-|.||++.+++.+.++.+++|+.+
T Consensus 163 r~~L~p~kvsvIPnAv~~~~f~P~~~~------------~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vr-- 228 (426)
T KOG1111|consen 163 RGALAPAKVSVIPNAVVTHTFTPDAAD------------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVR-- 228 (426)
T ss_pred EeccCHhHeeeccceeeccccccCccc------------cCCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCCee--
Confidence 333346689999999999999884321 12 345789999999999999999999999999999865
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHH
Q 005855 399 VVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYE 478 (673)
Q Consensus 399 v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lE 478 (673)
++++| |||..-.+++.+++.-- ..++. +.|.++.+++...|...|||+.||+.|.||++++|
T Consensus 229 --fii~G-----DGPk~i~lee~lEk~~l----------~~rV~-~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivE 290 (426)
T KOG1111|consen 229 --FIIIG-----DGPKRIDLEEMLEKLFL----------QDRVV-MLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVE 290 (426)
T ss_pred --EEEec-----CCcccchHHHHHHHhhc----------cCceE-EecccchHHHHHHHhcCcEEeccHHHHHHHHHHHH
Confidence 77776 56655455555555411 13566 47999999999999999999999999999999999
Q ss_pred HHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHHHhcC
Q 005855 479 FVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNM 527 (673)
Q Consensus 479 amA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m 527 (673)
|+.|| .++|.+..+|..+.|.++-+...+-+++++++++.++++.
T Consensus 291 AaScG----L~VVsTrVGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~ 335 (426)
T KOG1111|consen 291 AASCG----LPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITK 335 (426)
T ss_pred HHhCC----CEEEEeecCCccccCCccceeccCCChHHHHHHHHHHHHH
Confidence 99994 7888888999888883332445566789999999998863
No 82
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.57 E-value=9.7e-13 Score=144.29 Aligned_cols=217 Identities=10% Similarity=0.051 Sum_probs=139.6
Q ss_pred cCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCC
Q 005855 287 AADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGR 363 (673)
Q Consensus 287 ~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~ 363 (673)
.+|.+...+......+.. .|. ...++.+++++||.+.+.+. . ....+++++ +++
T Consensus 150 ~~d~~~~~s~~~~~~l~~-----~g~-----------~~~ki~v~g~~v~~~f~~~~---~----~~~~~r~~~gl~~~~ 206 (382)
T PLN02605 150 GVTRCFCPSEEVAKRALK-----RGL-----------EPSQIRVYGLPIRPSFARAV---R----PKDELRRELGMDEDL 206 (382)
T ss_pred CCCEEEECCHHHHHHHHH-----cCC-----------CHHHEEEECcccCHhhccCC---C----CHHHHHHHcCCCCCC
Confidence 588887766544333321 122 13467788999987544321 1 112345555 368
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHh----CcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcc
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEE----NSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAV 439 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~----~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~ 439 (673)
++|+++||....||+..+++++..++.. .++ +.++++++. ++ .+++++++... + .
T Consensus 207 ~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~----~~~~vi~G~----~~---~~~~~L~~~~~--~--------~ 265 (382)
T PLN02605 207 PAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI----GQVVVICGR----NK---KLQSKLESRDW--K--------I 265 (382)
T ss_pred cEEEEECCCcccccHHHHHHHHHHhhccccccCCC----ceEEEEECC----CH---HHHHHHHhhcc--c--------C
Confidence 8999999999999999999999876521 233 333334421 22 22333433310 1 1
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCC-----CCchhhccCceEEECCCCH
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEF-----AGAAQSLGAGAILVNPWNI 514 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~-----aG~~~~lg~~gllVnP~D~ 514 (673)
.|+ +.|.++ ++..+|++||++|.+| .+++++|||||+ .|+|++.. .|.++.+..+|.-+.+.|+
T Consensus 266 ~v~-~~G~~~--~~~~l~~aaDv~V~~~----g~~ti~EAma~g----~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~ 334 (382)
T PLN02605 266 PVK-VRGFVT--NMEEWMGACDCIITKA----GPGTIAEALIRG----LPIILNGYIPGQEEGNVPYVVDNGFGAFSESP 334 (382)
T ss_pred CeE-EEeccc--cHHHHHHhCCEEEECC----CcchHHHHHHcC----CCEEEecCCCccchhhHHHHHhCCceeecCCH
Confidence 354 456664 7999999999999866 378999999995 89999985 2333444223333345899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHH
Q 005855 515 TEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSE 558 (673)
Q Consensus 515 ~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~ 558 (673)
++++++|.++|++.+++++++.+++++....+....-++.+++.
T Consensus 335 ~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 335 KEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999874556777777778887777666666555443
No 83
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.50 E-value=1.6e-12 Score=143.54 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=143.5
Q ss_pred CCceEEEeecccccCChHHHHHHHHHHHHhCcCcc-CceEEEEEEcC-CCCChHHHHHHHHHHHHHHHhhccccCCCCcc
Q 005855 362 GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWR-GKVVLLQIAVP-TRTDVPEYQRLTSQVHEIVGRINGRFGTLTAV 439 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~-~~v~Lvqvg~p-sr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~ 439 (673)
.+.+...+-|+.|.||+...|.||.++...-|+.. ...+++..|.+ ..+...+..++..++.+++++.+- +|
T Consensus 272 ~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l-~g----- 345 (495)
T KOG0853|consen 272 IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL-LG----- 345 (495)
T ss_pred cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc-cC-----
Confidence 36788899999999999999999999988775411 13556655532 323344445566677777766431 22
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHH--
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNIT-- 515 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~-- 515 (673)
..++|....++.+.+.+++.+.+.+.++..|.||+|++|||||+ .|+|++..+|..|++ |.+|++++| +.+
T Consensus 346 ~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~g----lPvvAt~~GGP~EiV~~~~tG~l~dp-~~e~~ 420 (495)
T KOG0853|consen 346 QFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACG----LPVVATNNGGPAEIVVHGVTGLLIDP-GQEAV 420 (495)
T ss_pred ceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcC----CCEEEecCCCceEEEEcCCcceeeCC-chHHH
Confidence 34556677888888888888899999998899999999999995 999999999999998 789999999 666
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhHHHhh-CCHHHHHHHHHHHHH
Q 005855 516 -EVANAIARALNMSPEEREKRHWHNFTHVTT-HTAQEWAETFVSELN 560 (673)
Q Consensus 516 -~lA~aI~~aL~m~~~er~~r~~~~~~~v~~-~~~~~W~~~fl~~L~ 560 (673)
.+|++|.++.+.|. .+.+++++.+++|.+ |+++...+++.+.+.
T Consensus 421 ~~~a~~~~kl~~~p~-l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 421 AELADALLKLRRDPE-LWARMGKNGLKRVKEMFSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Confidence 59999999998765 588888999999987 665444444444333
No 84
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=4.7e-12 Score=130.42 Aligned_cols=198 Identities=25% Similarity=0.335 Sum_probs=143.9
Q ss_pred EEEEeecCcChhhhhhh-hcCChhHHHHHHHHHHhcC--CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEE
Q 005855 327 RVAAFPIGIDSERFIRA-LEINPVQVHIKELQETFAG--RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQ 403 (673)
Q Consensus 327 ~v~viP~GID~~~f~~~-~~~~~~~~~~~~lr~~~~~--~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvq 403 (673)
++.++|+|+|.+.+... ... ..+ ..+++++||+.+.||+...++|+..+....++ +.+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~----~~~~~ 235 (381)
T COG0438 173 KIVVIPNGIDTEKFAPARIGL-------------LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPD----IKLVI 235 (381)
T ss_pred CceEecCCcCHHHcCccccCC-------------CcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCC----eEEEE
Confidence 67789999999988642 000 112 36899999999999999999999999877665 45776
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhc
Q 005855 404 IAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQ 483 (673)
Q Consensus 404 vg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~ 483 (673)
+|..... ...+.. ++...+. . ..+.+ .|.++.+++..+|+.||++++||..||||++++|||+|+
T Consensus 236 ~g~~~~~----~~~~~~----~~~~~~~----~--~~v~~-~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g 300 (381)
T COG0438 236 VGDGPER----REELEK----LAKKLGL----E--DNVKF-LGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAG 300 (381)
T ss_pred EcCCCcc----HHHHHH----HHHHhCC----C--CcEEE-ecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcC
Confidence 7643211 122222 3333221 0 13454 788888899999999999999999999999999999995
Q ss_pred cCCCceEEEeCCCCchhhccCc--eEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHH
Q 005855 484 DLKKGVLILSEFAGAAQSLGAG--AILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELN 560 (673)
Q Consensus 484 ~~~~g~lVlSe~aG~~~~lg~~--gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~ 560 (673)
.|+|+|...|..+.+..+ |+++++.|.+++++++..++++. +.+.......++.+ ..+++..-++.+.+.+.
T Consensus 301 ----~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 301 ----TPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDP-ELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred ----CcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 889999999888888433 88888889999999999999887 34444444344444 57777666665555554
Q ss_pred H
Q 005855 561 D 561 (673)
Q Consensus 561 ~ 561 (673)
.
T Consensus 376 ~ 376 (381)
T COG0438 376 E 376 (381)
T ss_pred H
Confidence 4
No 85
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.3e-13 Score=142.50 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=75.6
Q ss_pred cchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHH
Q 005855 577 LREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKV 656 (673)
Q Consensus 577 L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~ 656 (673)
+....+...|..+++|+|||||||||+++..+| ..+.|+++++++|++|+++++|.|||+|||+..+|++|
T Consensus 4 ~~~~~~~~~~~~a~~~~~~lDyDGTl~~i~~~p---------~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~ 74 (266)
T COG1877 4 LQSNQLLEPYLNARKRLLFLDYDGTLTEIVPHP---------EAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERL 74 (266)
T ss_pred hhhhhhccccccccceEEEEeccccccccccCc---------cccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHh
Confidence 456677788999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred hcccccceeecc
Q 005855 657 LDLVLFIFFSGL 668 (673)
Q Consensus 657 ~~~~~~~~~~~~ 668 (673)
++ ++++.++|-
T Consensus 75 ~~-v~~i~l~ae 85 (266)
T COG1877 75 FG-VPGIGLIAE 85 (266)
T ss_pred cC-CCCccEEEe
Confidence 99 888877653
No 86
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.42 E-value=1.3e-11 Score=128.33 Aligned_cols=312 Identities=12% Similarity=0.196 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHH---hcC-CCCEEEEe--CccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHh
Q 005855 211 FAAYIKANQMFADVVNK---HYK-DGDVVWCH--DYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRA 284 (673)
Q Consensus 211 w~~Y~~vN~~fA~~i~~---~~~-~~DvVwvH--Dyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ 284 (673)
|..+--.-|+.+..|+. .++ ++| |||- .|.+. +|.+ |. +...+|+.+.|.|--|.++...+-.|..-
T Consensus 126 ~~hfTllgQaigsmIl~~Eai~r~~Pd-i~IDtMGY~fs-~p~~-r~-l~~~~V~aYvHYP~iS~DML~~l~qrq~s--- 198 (465)
T KOG1387|consen 126 WKHFTLLGQAIGSMILAFEAIIRFPPD-IFIDTMGYPFS-YPIF-RR-LRRIPVVAYVHYPTISTDMLKKLFQRQKS--- 198 (465)
T ss_pred ccceehHHHHHHHHHHHHHHHHhCCch-heEecCCCcch-hHHH-HH-HccCceEEEEecccccHHHHHHHHhhhhc---
Confidence 44444444444444442 234 555 4663 34433 3333 22 56789999999999888887655432111
Q ss_pred hhcCCEEEEeCHHHHHHHHH------HHHHHhccccC--CCce-eeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHH
Q 005855 285 VLAADLVGFHTYDYARHFVS------ACTRILGFEGT--PEGV-EDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKE 355 (673)
Q Consensus 285 ll~aDlIgF~t~~~~~~Fl~------~~~r~l~~~~~--~~~i-~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~ 355 (673)
.+..+---.|-|-|.. +|..+.-++.+ .+.| +.-++ ..+.++.+-++++.+.....+
T Consensus 199 ----~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~-~~~~iVyPPC~~e~lks~~~t--------- 264 (465)
T KOG1387|consen 199 ----GILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQS-NTCSIVYPPCSTEDLKSKFGT--------- 264 (465)
T ss_pred ----chhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhc-cceeEEcCCCCHHHHHHHhcc---------
Confidence 1122222234444432 11111111111 1111 11222 234444444676655443221
Q ss_pred HHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcC--ccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcccc
Q 005855 356 LQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSD--WRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRF 433 (673)
Q Consensus 356 lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~--~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~ 433 (673)
+-.....+|++|.+.|.|+.. .|+-+...+.+.|. ....+.|+++| ..|+. .++ +.-+.++.++.+++-.
T Consensus 265 ---e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivG-ScRne-eD~-ervk~Lkd~a~~L~i~- 336 (465)
T KOG1387|consen 265 ---EGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVG-SCRNE-EDE-ERVKSLKDLAEELKIP- 336 (465)
T ss_pred ---cCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEe-ccCCh-hhH-HHHHHHHHHHHhcCCc-
Confidence 113457899999999999999 77888888888887 34468888777 45543 222 3344566666665532
Q ss_pred CCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCch-hhc----c-CceE
Q 005855 434 GTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA-QSL----G-AGAI 507 (673)
Q Consensus 434 g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~-~~l----g-~~gl 507 (673)
..|. |...++.+++..+|..|.+.|.+-..|-||+.+.||||++ ..+|+-..+|.. +++ | .+|+
T Consensus 337 -----~~v~-F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAG----lIpi~h~SgGP~lDIV~~~~G~~tGF 406 (465)
T KOG1387|consen 337 -----KHVQ-FEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAG----LIPIVHNSGGPLLDIVTPWDGETTGF 406 (465)
T ss_pred -----cceE-EEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcC----ceEEEeCCCCCceeeeeccCCcccee
Confidence 2355 4678999999999999999999999999999999999993 334443444433 222 4 4788
Q ss_pred EECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHhH
Q 005855 508 LVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 563 (673)
Q Consensus 508 lVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~ 563 (673)
+.. +.++.|++|.+++.+..+||..+...+|..+.+++-+...+.|.+.+....
T Consensus 407 la~--t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll 460 (465)
T KOG1387|consen 407 LAP--TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPICKLL 460 (465)
T ss_pred ecC--ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhh
Confidence 873 678899999999999999988888888999999988888888876665543
No 87
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.42 E-value=6.4e-11 Score=129.47 Aligned_cols=271 Identities=13% Similarity=0.084 Sum_probs=161.4
Q ss_pred HHHHHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHH
Q 005855 222 ADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARH 301 (673)
Q Consensus 222 A~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~ 301 (673)
..++++..+| |+|++| +....++.+.+....++++...+ +.|-. + ...+ ...+|.+...+....+.
T Consensus 96 l~~~l~~~~p-D~Vi~~-~~~~~~~~~~~~~~~~ip~~~~~-td~~~-------~-~~~~---~~~ad~i~~~s~~~~~~ 161 (380)
T PRK13609 96 LKLLLQAEKP-DIVINT-FPIIAVPELKKQTGISIPTYNVL-TDFCL-------H-KIWV---HREVDRYFVATDHVKKV 161 (380)
T ss_pred HHHHHHHhCc-CEEEEc-ChHHHHHHHHHhcCCCCCeEEEe-CCCCC-------C-cccc---cCCCCEEEECCHHHHHH
Confidence 3444444554 999985 55556776655555556655322 21210 0 0001 12588888777654444
Q ss_pred HHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCc-eEEEeecccccCC
Q 005855 302 FVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRK-VMLGVDRLDMIKG 377 (673)
Q Consensus 302 Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~-iIl~VgRLd~~KG 377 (673)
+.+ .|.+ ..++.++++.++. .|.+.. + . ..+++++ ++++ ++++.|++...||
T Consensus 162 l~~-----~gi~-----------~~ki~v~G~p~~~-~f~~~~--~--~---~~~~~~~~l~~~~~~il~~~G~~~~~k~ 217 (380)
T PRK13609 162 LVD-----IGVP-----------PEQVVETGIPIRS-SFELKI--N--P---DIIYNKYQLCPNKKILLIMAGAHGVLGN 217 (380)
T ss_pred HHH-----cCCC-----------hhHEEEECcccCh-HHcCcC--C--H---HHHHHHcCCCCCCcEEEEEcCCCCCCcC
Confidence 322 1221 2345554443432 333211 1 1 1234444 2444 4556799999999
Q ss_pred hHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHH
Q 005855 378 IPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALY 457 (673)
Q Consensus 378 i~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly 457 (673)
+..+++++.. .|+ +.++++++. +.+ +++++++++.+.+ ..|++ .|.+ +++..+|
T Consensus 218 ~~~li~~l~~----~~~----~~~viv~G~---~~~----~~~~l~~~~~~~~--------~~v~~-~g~~--~~~~~l~ 271 (380)
T PRK13609 218 VKELCQSLMS----VPD----LQVVVVCGK---NEA----LKQSLEDLQETNP--------DALKV-FGYV--ENIDELF 271 (380)
T ss_pred HHHHHHHHhh----CCC----cEEEEEeCC---CHH----HHHHHHHHHhcCC--------CcEEE-Eech--hhHHHHH
Confidence 9999888753 344 457666532 122 3344555543321 13665 4665 4688999
Q ss_pred HHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeC-CCCc----hhhccCceEEECCCCHHHHHHHHHHHhcCCHHHH
Q 005855 458 AVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSE-FAGA----AQSLGAGAILVNPWNITEVANAIARALNMSPEER 532 (673)
Q Consensus 458 ~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe-~aG~----~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~~er 532 (673)
+.||+++. ++.|++++|||||+ .|+|++. ..|. ...+...|..+.+.|+++++++|.++++.+ +.+
T Consensus 272 ~~aD~~v~----~~gg~t~~EA~a~g----~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~-~~~ 342 (380)
T PRK13609 272 RVTSCMIT----KPGGITLSEAAALG----VPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDD-MKL 342 (380)
T ss_pred HhccEEEe----CCCchHHHHHHHhC----CCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCH-HHH
Confidence 99999874 45589999999995 8888876 3442 122334465666789999999999999864 456
Q ss_pred HHHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHH
Q 005855 533 EKRHWHNFTHVTTHTAQEWAETFVSELNDTVVE 565 (673)
Q Consensus 533 ~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~ 565 (673)
.++.++.++....++.+..++.+++.+....+-
T Consensus 343 ~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~~~~ 375 (380)
T PRK13609 343 LQMKEAMKSLYLPEPADHIVDDILAENHVEPNL 375 (380)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhhhhhhhh
Confidence 666667777777788888888888777655443
No 88
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.41 E-value=3.5e-11 Score=129.27 Aligned_cols=247 Identities=17% Similarity=0.166 Sum_probs=151.0
Q ss_pred HHHhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHH
Q 005855 225 VNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 225 i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
+++..+ .|+|++|..... ++..+..+..+.++.++.|..+|. .. +.++ ...+|.|...++...+.
T Consensus 84 ~i~~~~-pDvI~~~~~~~~-~~~~~~a~~~~~p~v~~~~~~~~~--~~------~~~~--~~~~~~vi~~s~~~~~~--- 148 (350)
T cd03785 84 ILKKFK-PDVVVGFGGYVS-GPVGLAAKLLGIPLVIHEQNAVPG--LA------NRLL--ARFADRVALSFPETAKY--- 148 (350)
T ss_pred HHHhcC-CCEEEECCCCcc-hHHHHHHHHhCCCEEEEcCCCCcc--HH------HHHH--HHhhCEEEEcchhhhhc---
Confidence 334344 599999875543 333333444466776655554442 10 1111 12367777666533221
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCceEEEeecccccCChHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGIPQK 381 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VgRLd~~KGi~~~ 381 (673)
+ ...++.++|+|+|.+.+.+.. . ++++ +++++|+.+++....|+...+
T Consensus 149 -----~-------------~~~~~~~i~n~v~~~~~~~~~-------~----~~~~~~~~~~~~i~~~~g~~~~~~~~~~ 199 (350)
T cd03785 149 -----F-------------PKDKAVVTGNPVREEILALDR-------E----RARLGLRPGKPTLLVFGGSQGARAINEA 199 (350)
T ss_pred -----C-------------CCCcEEEECCCCchHHhhhhh-------h----HHhcCCCCCCeEEEEECCcHhHHHHHHH
Confidence 0 134778899999988775321 0 2222 367788888888778887765
Q ss_pred H-HHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHc
Q 005855 382 L-LAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVT 460 (673)
Q Consensus 382 L-~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~A 460 (673)
+ +|++.+.+ + ++.++.++++ + +.+++++.++++ + ..|++ .+.+ +++..+|+.|
T Consensus 200 l~~a~~~l~~--~----~~~~~~i~G~----g-~~~~l~~~~~~~--------~----~~v~~-~g~~--~~~~~~l~~a 253 (350)
T cd03785 200 VPEALAELLR--K----RLQVIHQTGK----G-DLEEVKKAYEEL--------G----VNYEV-FPFI--DDMAAAYAAA 253 (350)
T ss_pred HHHHHHHhhc--c----CeEEEEEcCC----c-cHHHHHHHHhcc--------C----CCeEE-eehh--hhHHHHHHhc
Confidence 4 77776642 2 2333333322 2 223344333322 1 12443 4554 7899999999
Q ss_pred CEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCC--------chhhc--cCceEEECCC--CHHHHHHHHHHHhcCC
Q 005855 461 DVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAG--------AAQSL--GAGAILVNPW--NITEVANAIARALNMS 528 (673)
Q Consensus 461 Dv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG--------~~~~l--g~~gllVnP~--D~~~lA~aI~~aL~m~ 528 (673)
|++|.+| | +.+++|||+|+ .|+|++...+ .++.+ +..|++|++. |.++++++|.++++.
T Consensus 254 d~~v~~s---g-~~t~~Eam~~G----~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~- 324 (350)
T cd03785 254 DLVISRA---G-ASTVAELAALG----LPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD- 324 (350)
T ss_pred CEEEECC---C-HhHHHHHHHhC----CCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC-
Confidence 9999877 3 57899999995 7888876543 13444 3578999987 999999999999974
Q ss_pred HHHHHHHHHHhhHHHhhCCHHH
Q 005855 529 PEEREKRHWHNFTHVTTHTAQE 550 (673)
Q Consensus 529 ~~er~~r~~~~~~~v~~~~~~~ 550 (673)
++.++.+..++++++..+...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~ 346 (350)
T cd03785 325 PERLKAMAEAARSLARPDAAER 346 (350)
T ss_pred HHHHHHHHHHHHhcCCCCHHHH
Confidence 4566777777777776654433
No 89
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.41 E-value=1.8e-11 Score=132.36 Aligned_cols=252 Identities=16% Similarity=0.082 Sum_probs=159.7
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
+.|+|++|+....+.+. +..+..+.++.++.|..+|.. .+.++ ...+|.+...++.. +. .
T Consensus 91 ~pDvv~~~~~~~~~~~~-~~~~~~~~p~v~~~~~~~~~~--------~~r~~--~~~~d~ii~~~~~~---~~----~-- 150 (357)
T PRK00726 91 KPDVVVGFGGYVSGPGG-LAARLLGIPLVIHEQNAVPGL--------ANKLL--ARFAKKVATAFPGA---FP----E-- 150 (357)
T ss_pred CCCEEEECCCcchhHHH-HHHHHcCCCEEEEcCCCCccH--------HHHHH--HHHhchheECchhh---hh----c--
Confidence 35999999855544433 334455678877666544421 01111 12356555444311 10 0
Q ss_pred ccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-cCCceEEEeecccccCChHHHH-HHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF-AGRKVMLGVDRLDMIKGIPQKL-LAFEKF 388 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~~~~iIl~VgRLd~~KGi~~~L-~Af~~l 388 (673)
....++.++|+|||.+.+.+.. .. ..+ .. .+.++|+++|+....|++..++ +|+.++
T Consensus 151 ------------~~~~~i~vi~n~v~~~~~~~~~-----~~--~~~--~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~ 209 (357)
T PRK00726 151 ------------FFKPKAVVTGNPVREEILALAA-----PP--ARL--AGREGKPTLLVVGGSQGARVLNEAVPEALALL 209 (357)
T ss_pred ------------cCCCCEEEECCCCChHhhcccc-----hh--hhc--cCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 1235789999999987664311 00 111 11 3677889999999999887776 888877
Q ss_pred HHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCC
Q 005855 389 LEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSL 468 (673)
Q Consensus 389 l~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl 468 (673)
... | ..++++|.+ + .+++.+.++ . + .. |. +.+.+ +++..+|+.||+++.+|
T Consensus 210 ~~~-~-----~~~~~~G~g-----~-~~~~~~~~~-----~----~---~~-v~-~~g~~--~~~~~~~~~~d~~i~~~- 260 (357)
T PRK00726 210 PEA-L-----QVIHQTGKG-----D-LEEVRAAYA-----A----G---IN-AE-VVPFI--DDMAAAYAAADLVICRA- 260 (357)
T ss_pred hhC-c-----EEEEEcCCC-----c-HHHHHHHhh-----c----C---Cc-EE-EeehH--hhHHHHHHhCCEEEECC-
Confidence 432 2 335556532 2 122322221 1 1 11 44 35555 68999999999999877
Q ss_pred CcCCChhHHHHHhhccCCCceEEEeCCCC--------chhhc--cCceEEECCCC--HHHHHHHHHHHhcCCHHHHHHHH
Q 005855 469 RDGMNLVSYEFVACQDLKKGVLILSEFAG--------AAQSL--GAGAILVNPWN--ITEVANAIARALNMSPEEREKRH 536 (673)
Q Consensus 469 ~EGf~Lv~lEamA~~~~~~g~lVlSe~aG--------~~~~l--g~~gllVnP~D--~~~lA~aI~~aL~m~~~er~~r~ 536 (673)
| +.+++|||+|+ .|+|++...| .++.+ +..|+++++.| +++++++|.+++++ ++.++.+.
T Consensus 261 --g-~~~~~Ea~~~g----~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~ 332 (357)
T PRK00726 261 --G-ASTVAELAAAG----LPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD-PERLEAMA 332 (357)
T ss_pred --C-HHHHHHHHHhC----CCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC-HHHHHHHH
Confidence 3 58899999995 7888775432 12334 35689999888 99999999999997 45677777
Q ss_pred HHhhHHHhhCCHHHHHHHHHHHHH
Q 005855 537 WHNFTHVTTHTAQEWAETFVSELN 560 (673)
Q Consensus 537 ~~~~~~v~~~~~~~W~~~fl~~L~ 560 (673)
++++++.++++...-++.+++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 333 EAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHhh
Confidence 788888888888888877776553
No 90
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.40 E-value=1e-11 Score=122.70 Aligned_cols=118 Identities=28% Similarity=0.343 Sum_probs=86.4
Q ss_pred EeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCC
Q 005855 368 GVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRS 447 (673)
Q Consensus 368 ~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~ 447 (673)
++||+.+.||+..+++|+..+.+++|+ +.|+++|... + .. .....+.+. +. ...|.++ +.
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~----~~~~i~G~~~--~-~~--~~~~~~~~~--------~~--~~~v~~~-~~ 168 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPD----LKLVIAGDGP--E-RE--YLEELLAAL--------LL--LDRVIFL-GG 168 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCC----eEEEEEeCCC--C-hH--HHHHHHHhc--------CC--cccEEEe-CC
Confidence 999999999999999999999887765 5588887532 1 11 111111111 11 1246654 55
Q ss_pred C-CHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEE
Q 005855 448 L-DFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILV 509 (673)
Q Consensus 448 v-~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllV 509 (673)
+ +.+++..+++.||+++.||..||++.+++|||+|+ .|+|+|+..+..+.+ +.+|++|
T Consensus 169 ~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g----~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 169 LDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACG----LPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred CCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCC----CCEEEcCCCCcceEEECCCceEEC
Confidence 5 56677777777999999999999999999999995 899999999988766 4566654
No 91
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.33 E-value=8.9e-11 Score=126.00 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=118.9
Q ss_pred EEeecCcChhhhhhhhcCChhHHHHHHHHHHh-cCCceEEEeecccccCChHHH-HHHHHHHHHhCcCccCceEEEEEEc
Q 005855 329 AAFPIGIDSERFIRALEINPVQVHIKELQETF-AGRKVMLGVDRLDMIKGIPQK-LLAFEKFLEENSDWRGKVVLLQIAV 406 (673)
Q Consensus 329 ~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~~~~iIl~VgRLd~~KGi~~~-L~Af~~ll~~~P~~~~~v~Lvqvg~ 406 (673)
.++|+|||...+.+.. + . ..+ .+ +++++|+++||....|++... ++|++++.+. ++ .++.+++
T Consensus 153 ~~i~n~v~~~~~~~~~--~--~---~~~--~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~----~~~~~~g 217 (348)
T TIGR01133 153 VLVGNPVRQEIRSLPV--P--R---ERF--GLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GI----QIVHQTG 217 (348)
T ss_pred eEEcCCcCHHHhcccc--h--h---hhc--CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--Cc----EEEEECC
Confidence 6889999976654310 0 0 111 12 367789999998888987664 4788777542 22 2333432
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCC
Q 005855 407 PTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLK 486 (673)
Q Consensus 407 psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~ 486 (673)
+++ .+. +++.+.+.+ ...++.+. . .++..+|+.||++|.+| | +.+++|||+|+
T Consensus 218 ----~~~-~~~----l~~~~~~~~-------l~~~v~~~---~-~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g--- 270 (348)
T TIGR01133 218 ----KND-LEK----VKNVYQELG-------IEAIVTFI---D-ENMAAAYAAADLVISRA---G-ASTVAELAAAG--- 270 (348)
T ss_pred ----cch-HHH----HHHHHhhCC-------ceEEecCc---c-cCHHHHHHhCCEEEECC---C-hhHHHHHHHcC---
Confidence 222 123 333333322 11233333 2 27899999999999875 4 68999999995
Q ss_pred CceEEEeCCCCc-------hhhc--cCceEEECCCC--HHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHH
Q 005855 487 KGVLILSEFAGA-------AQSL--GAGAILVNPWN--ITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAE 553 (673)
Q Consensus 487 ~g~lVlSe~aG~-------~~~l--g~~gllVnP~D--~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~ 553 (673)
.|+|++...|. ++.+ +.+|+++++.| +++++++|.++++. ++.++++.+++++++.++...++++
T Consensus 271 -~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 271 -VPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD-PANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred -CCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHhcCCccHHHHHHh
Confidence 88888876553 2344 46799999876 99999999999975 4567777788888887776666554
No 92
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.31 E-value=2.4e-09 Score=123.49 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=124.8
Q ss_pred CCceEEEeecccccCChHHHHHHHHHHHH--hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcc
Q 005855 362 GRKVMLGVDRLDMIKGIPQKLLAFEKFLE--ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAV 439 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~L~Af~~ll~--~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~ 439 (673)
+.++|.+|.|+...||++.++.+++++++ ++|+ ..+.+|+.|.+...+.. -+++.+.+.+++.+ -.|. +
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~--~pvq~V~~Gka~p~d~~-gk~~i~~i~~la~~--~~~~--~-- 458 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPE--RPVQIVFAGKAHPADGE-GKEIIQRIVEFSKR--PEFR--G-- 458 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCC--CCeEEEEEEecCcccch-HHHHHHHHHHHHhc--ccCC--C--
Confidence 55689999999999999999999999985 5554 24778888765433322 23455666666543 0121 1
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEE-cCC-CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECC----
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALV-TSL-RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNP---- 511 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv-~Sl-~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP---- 511 (673)
.|.++. ..+..--..+|..||+++. ||. +|..|+.-+=||.- |.|-+|-.-|...+. +.+|+.+.+
T Consensus 459 kv~f~~-~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~n-----GgL~~sv~DG~~~E~~~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 459 RIVFLE-NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMN-----GVLNLSILDGWWGEGYDGDNGWAIGDGEEY 532 (601)
T ss_pred CEEEEc-CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHc-----CCceeecccCcccccCCCCcEEEECCCccc
Confidence 466654 3455666678999999999 787 99999999999986 778888888777665 568999985
Q ss_pred --------CCHHHHHHHHHHHh-c----CCH----HHHHHHHHHhhH-HHhhCCHHHHHHHHHHH
Q 005855 512 --------WNITEVANAIARAL-N----MSP----EEREKRHWHNFT-HVTTHTAQEWAETFVSE 558 (673)
Q Consensus 512 --------~D~~~lA~aI~~aL-~----m~~----~er~~r~~~~~~-~v~~~~~~~W~~~fl~~ 558 (673)
.|.+++-++|.+++ . .+. .+-.++++++.. ....+++.+=++.|.+.
T Consensus 533 ~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~ 597 (601)
T TIGR02094 533 DDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDK 597 (601)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 89999999998777 2 111 112233333222 22347777777766553
No 93
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.30 E-value=5e-10 Score=121.86 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=143.2
Q ss_pred HhcCCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhh--cCCEEEEeCHHHHHHHHH
Q 005855 227 KHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVL--AADLVGFHTYDYARHFVS 304 (673)
Q Consensus 227 ~~~~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll--~aDlIgF~t~~~~~~Fl~ 304 (673)
+..+ .|+|++|......+...+-....+++++...+.- -+.+.+. |+.++..+-+. .+|++.-.+....+++++
T Consensus 83 ~~~~-pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~--~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~ 158 (365)
T TIGR00236 83 LEEK-PDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYS--PMPEEINRQLTGHIADLHFAPTEQAKDNLLR 158 (365)
T ss_pred HHcC-CCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCC--CCccHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3344 4999999543433433333334467776432221 1111111 12222222111 256665566665555532
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhc-CCceEEEe-ecc-cccCChHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA-GRKVMLGV-DRL-DMIKGIPQK 381 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~-~~~iIl~V-gRL-d~~KGi~~~ 381 (673)
.|. ...+|.++++|+....+...... ....++++++ ++++++.. .|. ...||+..+
T Consensus 159 -----~G~-----------~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~vl~~~hr~~~~~k~~~~l 217 (365)
T TIGR00236 159 -----ENV-----------KADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGEDKRYILLTLHRRENVGEPLENI 217 (365)
T ss_pred -----cCC-----------CcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCCCCCEEEEecCchhhhhhHHHHH
Confidence 122 24578999999633222221110 0122344443 33455544 465 345999999
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcC
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~AD 461 (673)
++|+.++.+++|+++ +++++.|. ++ .+.++.+ .++ .. ..|+ +.+.++..++..+|+.||
T Consensus 218 l~a~~~l~~~~~~~~----~vi~~~~~----~~---~~~~~~~---~~~----~~--~~v~-~~~~~~~~~~~~~l~~ad 276 (365)
T TIGR00236 218 FKAIREIVEEFEDVQ----IVYPVHLN----PV---VREPLHK---HLG----DS--KRVH-LIEPLEYLDFLNLAANSH 276 (365)
T ss_pred HHHHHHHHHHCCCCE----EEEECCCC----hH---HHHHHHH---HhC----CC--CCEE-EECCCChHHHHHHHHhCC
Confidence 999999988887653 55554332 11 1222222 111 11 2355 457888999999999999
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEe-CCCCchhhc-cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHH
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILS-EFAGAAQSL-GAGAILVNPWNITEVANAIARALNMSPEEREKR 535 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS-e~aG~~~~l-g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r 535 (673)
+++.+| |.+.+|||+|+ .|+|.+ ..+|..+.+ ...++++ |.|+++++++|.++|+.+ +.+.++
T Consensus 277 ~vv~~S-----g~~~~EA~a~g----~PvI~~~~~~~~~e~~~~g~~~lv-~~d~~~i~~ai~~ll~~~-~~~~~~ 341 (365)
T TIGR00236 277 LILTDS-----GGVQEEAPSLG----KPVLVLRDTTERPETVEAGTNKLV-GTDKENITKAAKRLLTDP-DEYKKM 341 (365)
T ss_pred EEEECC-----hhHHHHHHHcC----CCEEECCCCCCChHHHhcCceEEe-CCCHHHHHHHHHHHHhCh-HHHHHh
Confidence 999888 55689999995 788886 445554444 2345666 579999999999999854 334433
No 94
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.29 E-value=8.7e-10 Score=121.50 Aligned_cols=268 Identities=11% Similarity=0.067 Sum_probs=156.4
Q ss_pred HHHHhcCCCCEEEEeCccchhHHHHHH-hhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHH
Q 005855 224 VVNKHYKDGDVVWCHDYHLMFLPKCLK-EYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHF 302 (673)
Q Consensus 224 ~i~~~~~~~DvVwvHDyhl~llp~~Lr-~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~F 302 (673)
++++..+ .|+|+++.. ...+ ..++ ....++|+.. +++-+-.... | + --.+|.+...+......+
T Consensus 98 ~~l~~~k-PDvVi~~~p-~~~~-~~l~~~~~~~iP~~~-v~td~~~~~~-----w----~--~~~~d~~~v~s~~~~~~l 162 (391)
T PRK13608 98 NLLIKEK-PDLILLTFP-TPVM-SVLTEQFNINIPVAT-VMTDYRLHKN-----W----I--TPYSTRYYVATKETKQDF 162 (391)
T ss_pred HHHHHhC-cCEEEECCc-HHHH-HHHHHhcCCCCCEEE-EeCCCCcccc-----c----c--cCCCCEEEECCHHHHHHH
Confidence 3333344 489988522 2233 3344 3334566643 4444311000 1 0 135788877776544443
Q ss_pred HHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh---cCCc-eEEEeecccccCCh
Q 005855 303 VSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRK-VMLGVDRLDMIKGI 378 (673)
Q Consensus 303 l~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~-iIl~VgRLd~~KGi 378 (673)
.+ .|. ...+|.++++.|+.. |.+.. + ...+++++ ++++ +++++||+...||+
T Consensus 163 ~~-----~gi-----------~~~ki~v~GiPv~~~-f~~~~--~-----~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~ 218 (391)
T PRK13608 163 ID-----VGI-----------DPSTVKVTGIPIDNK-FETPI--D-----QKQWLIDNNLDPDKQTILMSAGAFGVSKGF 218 (391)
T ss_pred HH-----cCC-----------CHHHEEEECeecChH-hcccc--c-----HHHHHHHcCCCCCCCEEEEECCCcccchhH
Confidence 31 121 134566666666643 43211 1 11233333 2444 55679999999999
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 458 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~ 458 (673)
..+++++ ++..|+ +.++++++. .+ ++.+++.+.. +. . ..|+ +.|.+ +++..+|+
T Consensus 219 ~~li~~~---~~~~~~----~~~vvv~G~----~~---~l~~~l~~~~---~~----~--~~v~-~~G~~--~~~~~~~~ 272 (391)
T PRK13608 219 DTMITDI---LAKSAN----AQVVMICGK----SK---ELKRSLTAKF---KS----N--ENVL-ILGYT--KHMNEWMA 272 (391)
T ss_pred HHHHHHH---HhcCCC----ceEEEEcCC----CH---HHHHHHHHHh---cc----C--CCeE-EEecc--chHHHHHH
Confidence 9999985 233444 446556532 12 2233333322 11 0 1344 34665 57999999
Q ss_pred HcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhh-----ccCceEEECCCCHHHHHHHHHHHhcCCHHHHH
Q 005855 459 VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQS-----LGAGAILVNPWNITEVANAIARALNMSPEERE 533 (673)
Q Consensus 459 ~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~-----lg~~gllVnP~D~~~lA~aI~~aL~m~~~er~ 533 (673)
.||++|.. +.|+++.|||||+ .|+|++...+..+. +.+.|.-+-+.|.++++++|.++++++ +++.
T Consensus 273 ~aDl~I~k----~gg~tl~EA~a~G----~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~-~~~~ 343 (391)
T PRK13608 273 SSQLMITK----PGGITISEGLARC----IPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVASLTNGN-EQLT 343 (391)
T ss_pred hhhEEEeC----CchHHHHHHHHhC----CCEEECCCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCH-HHHH
Confidence 99999863 4589999999995 88888854332221 113333333569999999999999864 4667
Q ss_pred HHHHHhhHHHhhCCHHHHHHHHHHHHHHhHHH
Q 005855 534 KRHWHNFTHVTTHTAQEWAETFVSELNDTVVE 565 (673)
Q Consensus 534 ~r~~~~~~~v~~~~~~~W~~~fl~~L~~~~~~ 565 (673)
++.+++++....++....++.+++.+......
T Consensus 344 ~m~~~~~~~~~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 344 NMISTMEQDKIKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhhhhhh
Confidence 77778888888888888888888777654433
No 95
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.27 E-value=4.9e-10 Score=121.11 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=139.7
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHh
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL 310 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l 310 (673)
..|+|++|++....++..+..+..+.++.++.|.-. +.+ +..|+......-...+|.+...+....+++.+
T Consensus 88 ~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~-s~~--~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~------ 158 (363)
T cd03786 88 KPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLR-SFD--RGMPDEENRHAIDKLSDLHFAPTEEARRNLLQ------ 158 (363)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccc-cCC--CCCCchHHHHHHHHHhhhccCCCHHHHHHHHH------
Confidence 459999998766556555555555778876554211 000 01111100000112345554444433333321
Q ss_pred ccccCCCceeeCCeeeEEEEeecCc-ChhhhhhhhcCChhHHHHHHHHHHh--c-CCceEEEeecccc---cCChHHHHH
Q 005855 311 GFEGTPEGVEDQGRLTRVAAFPIGI-DSERFIRALEINPVQVHIKELQETF--A-GRKVMLGVDRLDM---IKGIPQKLL 383 (673)
Q Consensus 311 ~~~~~~~~i~~~gr~~~v~viP~GI-D~~~f~~~~~~~~~~~~~~~lr~~~--~-~~~iIl~VgRLd~---~KGi~~~L~ 383 (673)
.+....+|.++++++ |...+.+..... ...++.+ . ++.+++.++|+.. .||+..+++
T Consensus 159 ----------~G~~~~kI~vign~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~ 222 (363)
T cd03786 159 ----------EGEPPERIFVVGNTMIDALLRLLELAKK------ELILELLGLLPKKYILVTLHRVENVDDGEQLEEILE 222 (363)
T ss_pred ----------cCCCcccEEEECchHHHHHHHHHHhhcc------chhhhhcccCCCCEEEEEeCCccccCChHHHHHHHH
Confidence 112245788889885 654433221110 0111222 2 3456778999875 799999999
Q ss_pred HHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEE
Q 005855 384 AFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVA 463 (673)
Q Consensus 384 Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~ 463 (673)
|++.+.+. ++.++..+. .+....+++ .+.+.+. ....|+ +.+....+++..+|+.||++
T Consensus 223 al~~l~~~------~~~vi~~~~-----~~~~~~l~~----~~~~~~~-----~~~~v~-~~~~~~~~~~~~l~~~ad~~ 281 (363)
T cd03786 223 ALAELAEE------DVPVVFPNH-----PRTRPRIRE----AGLEFLG-----HHPNVL-LISPLGYLYFLLLLKNADLV 281 (363)
T ss_pred HHHHHHhc------CCEEEEECC-----CChHHHHHH----HHHhhcc-----CCCCEE-EECCcCHHHHHHHHHcCcEE
Confidence 99987532 234443332 222233333 3333221 001355 45666788999999999999
Q ss_pred EEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCC-CHHHHHHHHHHHhcCCH
Q 005855 464 LVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPW-NITEVANAIARALNMSP 529 (673)
Q Consensus 464 vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~-D~~~lA~aI~~aL~m~~ 529 (673)
|.+|- | +..|||+|+ .|+|++...+...++..+|+.+.+. |+++++++|.++++.+.
T Consensus 282 v~~Sg----g-i~~Ea~~~g----~PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 282 LTDSG----G-IQEEASFLG----VPVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDEF 339 (363)
T ss_pred EEcCc----c-HHhhhhhcC----CCEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCch
Confidence 99994 4 469999995 8888887655454443566655544 79999999999998754
No 96
>PLN02580 trehalose-phosphatase
Probab=99.26 E-value=7.7e-12 Score=135.65 Aligned_cols=73 Identities=18% Similarity=0.419 Sum_probs=65.7
Q ss_pred HHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 583 IERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 583 ~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
+.+|.++++++|||||||||+|++++| ..+.|+++++++|+.|+++. .|+|||||++++|+++++.. .
T Consensus 111 ~~~~~~~k~~~LfLDyDGTLaPIv~~P---------d~A~~s~~~~~aL~~La~~~--~VAIVSGR~~~~L~~~l~~~-~ 178 (384)
T PLN02580 111 IANFAKGKKIALFLDYDGTLSPIVDDP---------DRALMSDAMRSAVKNVAKYF--PTAIISGRSRDKVYELVGLT-E 178 (384)
T ss_pred HHHHhhcCCeEEEEecCCccCCCCCCc---------ccccCCHHHHHHHHHHhhCC--CEEEEeCCCHHHHHHHhCCC-C
Confidence 458899999999999999999999999 78999999999999999985 69999999999999999854 4
Q ss_pred ceeec
Q 005855 663 IFFSG 667 (673)
Q Consensus 663 ~~~~~ 667 (673)
+.++|
T Consensus 179 l~laG 183 (384)
T PLN02580 179 LYYAG 183 (384)
T ss_pred ccEEE
Confidence 55555
No 97
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=99.16 E-value=1.8e-11 Score=125.53 Aligned_cols=63 Identities=29% Similarity=0.422 Sum_probs=42.5
Q ss_pred EEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccccceeec
Q 005855 595 ILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLFIFFSG 667 (673)
Q Consensus 595 ~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~~~~~~ 667 (673)
||||||||+|+.++| ..+.|+++++++|++||++|+|+|||||||++++ .++|..++++.++|
T Consensus 1 ~lDyDGTL~p~~~~p---------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~-~~~~~~~~~i~l~g 63 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP---------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDD-LERFGGIPNIGLAG 63 (235)
T ss_dssp EEE-TTTSS---S-G---------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHH-HHHH-S-SS-EEEE
T ss_pred CcccCCccCCCCCCc---------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH-hHHhcCCCCceEEE
Confidence 799999999999988 7899999999999999999999999999999999 55666678887776
No 98
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.15 E-value=5.6e-09 Score=118.85 Aligned_cols=260 Identities=12% Similarity=0.075 Sum_probs=166.6
Q ss_pred cCCCCEEE--EeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCc--chHHHHhhhcCCEEEEeCHHHHHHHHH
Q 005855 229 YKDGDVVW--CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPS--RSDLLRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 229 ~~~~DvVw--vHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~--r~~il~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
..++|++. ++.-|... +....|..++.+..|+ -+. +. -...+..+..+|.+...|.+-.+....
T Consensus 222 ~~~~d~~Iva~Dr~~~~~----~~~~~~~~~~~ls~f~-~~~-------~~~~y~~~l~~~~~~d~iIv~T~~q~~~l~~ 289 (519)
T TIGR03713 222 VKDDDEIIVASDDRHNFL----VADTFPAKNLIFSLFS-ERN-------RHHTYLDLYESLSRADLIIVDREDIERLLEE 289 (519)
T ss_pred CCCCCEEEEEcCchhhhh----HhhcCccceEEEEecc-Ccc-------cccchhhhhhChhhcCeEEEcCHHHHHHHHH
Confidence 56788887 67677665 3333343344445565 111 21 245666777888777666543333221
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHH
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLA 384 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~A 384 (673)
.++.. . ...++..+|++.- +... . ..++..++.|-+++||| +.|-+..+|+|
T Consensus 290 ----~~~~~--------~-~~~~v~~Ip~~~~--~~~~--~----------~s~r~~~~~I~v~idrL-~ek~~~~~I~a 341 (519)
T TIGR03713 290 ----NYREN--------Y-VEFDISRITPFDT--RLRL--G----------QSQQLYETEIGFWIDGL-SDEELQQILQQ 341 (519)
T ss_pred ----Hhhhc--------c-cCCcceeeCccce--EEec--C----------hhhcccceEEEEEcCCC-ChHHHHHHHHH
Confidence 11100 0 1234556776544 1111 0 11222345556666699 99999999999
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCC----------------------cccEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLT----------------------AVPIH 442 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~----------------------~~pV~ 442 (673)
+.++.+++|+.. |.+.|..+ .. ++.+.+++++.++|..++... -...+
T Consensus 342 v~~~~~~~p~~~----L~~~gy~~---~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 411 (519)
T TIGR03713 342 LLQYILKNPDYE----LKILTYNN---DN---DITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERI 411 (519)
T ss_pred HHHHHhhCCCeE----EEEEEecC---ch---hHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEE
Confidence 999999999854 66666432 11 234556666666654422100 00234
Q ss_pred EeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHH
Q 005855 443 HLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANA 520 (673)
Q Consensus 443 ~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~a 520 (673)
.|.+..+..++.+.|..|.++|.+|..|||+ +.+||++.| .|.| .-|.++.+ |.||++| .|..++++|
T Consensus 412 ~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~G----iPqI---nyg~~~~V~d~~NG~li--~d~~~l~~a 481 (519)
T TIGR03713 412 AFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAG----IPQI---NKVETDYVEHNKNGYII--DDISELLKA 481 (519)
T ss_pred EEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcC----CCee---ecCCceeeEcCCCcEEe--CCHHHHHHH
Confidence 4677788889999999999999999999999 999999983 5555 56777777 7899999 699999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhHHHhhCCHH
Q 005855 521 IARALNMSPEEREKRHWHNFTHVTTHTAQ 549 (673)
Q Consensus 521 I~~aL~m~~~er~~r~~~~~~~v~~~~~~ 549 (673)
|...|..+. ...+....+.+.+.+|+..
T Consensus 482 l~~~L~~~~-~wn~~~~~sy~~~~~yS~~ 509 (519)
T TIGR03713 482 LDYYLDNLK-NWNYSLAYSIKLIDDYSSE 509 (519)
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHH
Confidence 999998653 4455556666766666543
No 99
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=99.14 E-value=4.9e-11 Score=123.14 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=61.6
Q ss_pred ccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccccceeecc
Q 005855 589 SNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLFIFFSGL 668 (673)
Q Consensus 589 s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~~~~~~~ 668 (673)
|++|+|||||||||+|+.++| ..+.|++++++.|+.|++|++|.|+|+|||+..++...+ .++++.+.|-
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p---------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~~-~~~~~~l~g~ 70 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDP---------DAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLGV-KLPGLGLAGE 70 (244)
T ss_pred CCcEEEEEecCccccCCcCCC---------cccCCCHHHHHHHHHHHhCCCCeEEEEECCChhhccccC-CCCceeEEee
Confidence 578999999999999998888 578899999999999999999999999999999988766 4566656554
Q ss_pred c
Q 005855 669 L 669 (673)
Q Consensus 669 ~ 669 (673)
+
T Consensus 71 h 71 (244)
T TIGR00685 71 H 71 (244)
T ss_pred c
Confidence 3
No 100
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.14 E-value=2e-10 Score=106.37 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=89.6
Q ss_pred CceEEEeecccccCChHHHHH-HHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 363 RKVMLGVDRLDMIKGIPQKLL-AFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 363 ~~iIl~VgRLd~~KGi~~~L~-Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
..+|++.|++.+.||+..+++ |++++.+++|+ +.|.++|.. ++ +++++ .. ..|
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~----~~l~i~G~~-----~~------~l~~~-~~----------~~v 55 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPD----IELIIIGNG-----PD------ELKRL-RR----------PNV 55 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTT----EEEEEECES-----S-------HHCCH-HH----------CTE
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcC----EEEEEEeCC-----HH------HHHHh-cC----------CCE
Confidence 357899999999999999999 99999999986 558877752 22 12222 11 136
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcCC-CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHH
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTSL-RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVA 518 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~Sl-~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA 518 (673)
++ .+.+ +++.++|+.||+++.|+. .++++..++|||++| .|+|+|.. |..+.+ ...|+++ +.|+++++
T Consensus 56 ~~-~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G----~pvi~~~~-~~~~~~~~~~~~~~~-~~~~~~l~ 126 (135)
T PF13692_consen 56 RF-HGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAG----KPVIASDN-GAEGIVEEDGCGVLV-ANDPEELA 126 (135)
T ss_dssp EE-E-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT------EEEEHH-HCHCHS---SEEEE--TT-HHHHH
T ss_pred EE-cCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhC----CCEEECCc-chhhheeecCCeEEE-CCCHHHHH
Confidence 65 5666 689999999999999985 789999999999995 88898888 555555 2456677 88999999
Q ss_pred HHHHHHhc
Q 005855 519 NAIARALN 526 (673)
Q Consensus 519 ~aI~~aL~ 526 (673)
++|.++++
T Consensus 127 ~~i~~l~~ 134 (135)
T PF13692_consen 127 EAIERLLN 134 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999985
No 101
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.13 E-value=1.1e-08 Score=110.46 Aligned_cols=240 Identities=14% Similarity=0.022 Sum_probs=144.8
Q ss_pred HHHhcCCCCEEEEeCccchh--H-HHHHHh-hCCCCeEEeEeccCCCchhhhhcCC-cchHHHHhhhcCCEEEEeCHHHH
Q 005855 225 VNKHYKDGDVVWCHDYHLMF--L-PKCLKE-YNSDMKVGWFLHTPFPSSEIHRTLP-SRSDLLRAVLAADLVGFHTYDYA 299 (673)
Q Consensus 225 i~~~~~~~DvVwvHDyhl~l--l-p~~Lr~-~~~~~~Ig~flH~PfP~~e~fr~lp-~r~~il~~ll~aDlIgF~t~~~~ 299 (673)
+....++||+|++|...+.. + ..+++. +..++++++++|--+|..- .... ........+..||.|..++....
T Consensus 58 ~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~--~~~~~~~~~~~~~~~~aD~iI~~S~~~~ 135 (333)
T PRK09814 58 ILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRF--DSNYYLMKEEIDMLNLADVLIVHSKKMK 135 (333)
T ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhc--cccchhhHHHHHHHHhCCEEEECCHHHH
Confidence 45567899999999854432 2 222222 1126999999998766321 1111 12233445667999999998765
Q ss_pred HHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeecccccCChH
Q 005855 300 RHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIP 379 (673)
Q Consensus 300 ~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~ 379 (673)
..+.+ .|.. ..++.++++..+...... +....+++.|+++||+....++.
T Consensus 136 ~~l~~-----~g~~-----------~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~i~yaG~l~k~~~l~ 185 (333)
T PRK09814 136 DRLVE-----EGLT-----------TDKIIVQGIFDYLNDIEL--------------VKTPSFQKKINFAGNLEKSPFLK 185 (333)
T ss_pred HHHHH-----cCCC-----------cCceEecccccccccccc--------------cccccCCceEEEecChhhchHHH
Confidence 55432 1211 223444454333211100 00113456899999999433211
Q ss_pred HHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH
Q 005855 380 QKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV 459 (673)
Q Consensus 380 ~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ 459 (673)
+..|+ +.|+++|.+ ++.. .. ...|+ |.|.++.+++..+|+.
T Consensus 186 ----------~~~~~----~~l~i~G~g-----~~~~-----------~~--------~~~V~-f~G~~~~eel~~~l~~ 226 (333)
T PRK09814 186 ----------NWSQG----IKLTVFGPN-----PEDL-----------EN--------SANIS-YKGWFDPEELPNELSK 226 (333)
T ss_pred ----------hcCCC----CeEEEECCC-----cccc-----------cc--------CCCeE-EecCCCHHHHHHHHhc
Confidence 12343 557777732 2111 00 01355 4689999999999998
Q ss_pred cCEEEEcCC-----------CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhc
Q 005855 460 TDVALVTSL-----------RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 460 ADv~vv~Sl-----------~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~ 526 (673)
|+.+++.- .-.++--..|||||| .|+|++..++.++.+ +..|++|+ +.++++++|..+
T Consensus 227 -~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G----~PVI~~~~~~~~~~V~~~~~G~~v~--~~~el~~~l~~~-- 297 (333)
T PRK09814 227 -GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG----LPVIVWSKAAIADFIVENGLGFVVD--SLEELPEIIDNI-- 297 (333)
T ss_pred -CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC----CCEEECCCccHHHHHHhCCceEEeC--CHHHHHHHHHhc--
Confidence 76666432 123444578999995 999999999999888 56799998 678999998874
Q ss_pred CCHHHHHHHHHHhhHHHhh
Q 005855 527 MSPEEREKRHWHNFTHVTT 545 (673)
Q Consensus 527 m~~~er~~r~~~~~~~v~~ 545 (673)
.++++.++.+++++....
T Consensus 298 -~~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 298 -TEEEYQEMVENVKKISKL 315 (333)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 356666666666665543
No 102
>PLN02151 trehalose-phosphatase
Probab=99.09 E-value=1.7e-10 Score=123.96 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=63.4
Q ss_pred HHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 583 IERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 583 ~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
+....++++++|||||||||+|++++| ..+.++++++++|+.|+++ ..|+|||||+++.|+++++. +.
T Consensus 90 ~~~~~~~~~~ll~lDyDGTL~PIv~~P---------~~A~~~~~~~~aL~~La~~--~~vaIvSGR~~~~l~~~~~~-~~ 157 (354)
T PLN02151 90 ILHKSEGKQIVMFLDYDGTLSPIVDDP---------DRAFMSKKMRNTVRKLAKC--FPTAIVSGRCREKVSSFVKL-TE 157 (354)
T ss_pred HHHhhcCCceEEEEecCccCCCCCCCc---------ccccCCHHHHHHHHHHhcC--CCEEEEECCCHHHHHHHcCC-cc
Confidence 344467788999999999999999999 6789999999999999976 58999999999999999974 55
Q ss_pred ceeec
Q 005855 663 IFFSG 667 (673)
Q Consensus 663 ~~~~~ 667 (673)
+.++|
T Consensus 158 l~laG 162 (354)
T PLN02151 158 LYYAG 162 (354)
T ss_pred ceEEE
Confidence 66665
No 103
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.09 E-value=9.5e-09 Score=112.11 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCceE-EEe-ecccccC-ChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCc
Q 005855 362 GRKVM-LGV-DRLDMIK-GIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTA 438 (673)
Q Consensus 362 ~~~iI-l~V-gRLd~~K-Gi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~ 438 (673)
++++| +.. +|....| ++..+++|++.+.+++|++ .+++++. +.+. ++++++++.+.. | .
T Consensus 185 ~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~----~~ii~~~----~~~~----~~~~~~~~~~~~---~---~ 246 (380)
T PRK00025 185 DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDL----RFVLPLV----NPKR----REQIEEALAEYA---G---L 246 (380)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCe----EEEEecC----Chhh----HHHHHHHHhhcC---C---C
Confidence 45554 333 4666654 4788999999998887764 4666653 1222 233444433210 1 1
Q ss_pred ccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe-----------------CCCCchhh
Q 005855 439 VPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS-----------------EFAGAAQS 501 (673)
Q Consensus 439 ~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS-----------------e~aG~~~~ 501 (673)
.+.++. .++..+|+.||+++.+| |.+.+|+|+|+ .|+|++ .+.|.++.
T Consensus 247 -~v~~~~-----~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G----~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (380)
T PRK00025 247 -EVTLLD-----GQKREAMAAADAALAAS-----GTVTLELALLK----VPMVVGYKVSPLTFWIAKRLVKVPYVSLPNL 311 (380)
T ss_pred -CeEEEc-----ccHHHHHHhCCEEEECc-----cHHHHHHHHhC----CCEEEEEccCHHHHHHHHHHHcCCeeehHHH
Confidence 244333 47899999999999998 78889999995 888877 44455555
Q ss_pred cc----CceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005855 502 LG----AGAILVNPWNITEVANAIARALNMSPEEREKRHWHN 539 (673)
Q Consensus 502 lg----~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~ 539 (673)
+. ..+++++..|+++++++|.++|+.++ .++++.+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~ 352 (380)
T PRK00025 312 LAGRELVPELLQEEATPEKLARALLPLLADGA-RRQALLEGF 352 (380)
T ss_pred hcCCCcchhhcCCCCCHHHHHHHHHHHhcCHH-HHHHHHHHH
Confidence 52 13467788899999999999998653 455544443
No 104
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.07 E-value=1.1e-07 Score=111.95 Aligned_cols=182 Identities=15% Similarity=0.098 Sum_probs=126.7
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHH--hCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLE--ENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~--~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
.+|.++.|+...||...++..++++.+ .+|+ ..+++|+.|.+...+. .-+++.+.+.+++.. .+|. ..|
T Consensus 479 ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~--~pvQ~IfaGKAhP~d~-~gK~iIk~i~~~a~~--p~~~----~kV 549 (778)
T cd04299 479 LTIGFARRFATYKRATLLLRDPERLKRLLNDPE--RPVQFIFAGKAHPADE-PGKELIQEIVEFSRR--PEFR----GRI 549 (778)
T ss_pred cEEeeeecchhhhhHHHHHHHHHHHHHHhhCCC--CCeEEEEEEecCccch-HHHHHHHHHHHHHhC--cCCC----CcE
Confidence 378999999999999999999999865 2344 2578887776543332 223455556655541 0221 146
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcCC--CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECC------
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNP------ 511 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~Sl--~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP------ 511 (673)
+|+.+ .+-.--..++..|||++.||. +|.-|+.-+=||.- |+|-+|..-|.-.+. |.+|+.+.+
T Consensus 550 vfle~-Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~N-----G~LnlSvlDGww~E~~~g~nGwaig~~~~~~~ 623 (778)
T cd04299 550 VFLED-YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALN-----GGLNLSVLDGWWDEGYDGENGWAIGDGDEYED 623 (778)
T ss_pred EEEcC-CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHc-----CCeeeecccCccccccCCCCceEeCCCccccC
Confidence 76554 455666678999999999999 89999999999885 889999988887776 788999988
Q ss_pred ------CCHHHHHHHHHHHhc----------CCHHHHHHHHHHhhH-HHhhCCHHHHHHHHHHHHHH
Q 005855 512 ------WNITEVANAIARALN----------MSPEEREKRHWHNFT-HVTTHTAQEWAETFVSELND 561 (673)
Q Consensus 512 ------~D~~~lA~aI~~aL~----------m~~~er~~r~~~~~~-~v~~~~~~~W~~~fl~~L~~ 561 (673)
.|.+++-+.|.+.+- .|. +-.+++++... ..-.+++.+-++.|+..+..
T Consensus 624 ~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~-~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~ 689 (778)
T cd04299 624 DEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPP-GWVAMMKHSMATLGPRFSAERMVREYVERFYL 689 (778)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcccCCCHHHHHHHHHHHhHH
Confidence 566777777755443 122 33344444333 33467888888888777753
No 105
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=98.96 E-value=5.6e-07 Score=101.53 Aligned_cols=307 Identities=16% Similarity=0.198 Sum_probs=154.7
Q ss_pred EEEEeCccchhHHHHHHhhCCCCeEEeEeccCCC-------chhhhhcCCc--chH------------HH-HhhhcCCEE
Q 005855 234 VVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFP-------SSEIHRTLPS--RSD------------LL-RAVLAADLV 291 (673)
Q Consensus 234 vVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP-------~~e~fr~lp~--r~~------------il-~~ll~aDlI 291 (673)
+.|.|.|..-+-..++|.+.+.+.-+|+.|---+ ..++|..|+. ..+ +- .+...||..
T Consensus 146 iaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~AdvF 225 (633)
T PF05693_consen 146 IAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADVF 225 (633)
T ss_dssp EEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSEE
T ss_pred EEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCee
Confidence 3477888888777889999999999999996533 2233444431 001 11 112344443
Q ss_pred EEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcC----ChhHHHHHHH-HHHh------
Q 005855 292 GFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEI----NPVQVHIKEL-QETF------ 360 (673)
Q Consensus 292 gF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~----~~~~~~~~~l-r~~~------ 360 (673)
-..+.--+. .|..+|+ |..- .|.|||+|.+.|.....- ...++++.++ +..+
T Consensus 226 TTVSeITa~----Ea~~LL~------------r~pD-vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~df 288 (633)
T PF05693_consen 226 TTVSEITAK----EAEHLLK------------RKPD-VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDF 288 (633)
T ss_dssp EESSHHHHH----HHHHHHS------------S--S-EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S
T ss_pred eehhhhHHH----HHHHHhC------------CCCC-EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 333321111 2333332 2211 366999999877653210 0112233332 2222
Q ss_pred -cCCceEE-Eeecccc-cCChHHHHHHHHHHHHh--CcCccCceEEEEEEcCCCCCh---H------HHHHHHHHHHHHH
Q 005855 361 -AGRKVML-GVDRLDM-IKGIPQKLLAFEKFLEE--NSDWRGKVVLLQIAVPTRTDV---P------EYQRLTSQVHEIV 426 (673)
Q Consensus 361 -~~~~iIl-~VgRLd~-~KGi~~~L~Af~~ll~~--~P~~~~~v~Lvqvg~psr~~~---~------ey~~l~~~l~~lv 426 (673)
.++.+++ -.||.++ .||++..|+|+.+|-.. .-.....|+-. +-.|+.... . -+.+|++.+.++.
T Consensus 289 d~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaF-ii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~ 367 (633)
T PF05693_consen 289 DLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAF-IIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQ 367 (633)
T ss_dssp -GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEE-EE---SEEEE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEE-EEecCccCCcCHHHHhhHHHHHHHHHHHHHHH
Confidence 1345554 5799985 89999999999988432 11111124333 334554321 0 1223333333333
Q ss_pred Hhhccc-c-----C---------------------------------------------------------CCCcccEEE
Q 005855 427 GRINGR-F-----G---------------------------------------------------------TLTAVPIHH 443 (673)
Q Consensus 427 ~~IN~~-~-----g---------------------------------------------------------~~~~~pV~~ 443 (673)
.+|..+ | | ..+-..|+|
T Consensus 368 ~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF 447 (633)
T PF05693_consen 368 EKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIF 447 (633)
T ss_dssp HHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE
T ss_pred HHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEE
Confidence 333110 0 0 011133555
Q ss_pred eCCCCC------HHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-------cCceEEE-
Q 005855 444 LDRSLD------FPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-------GAGAILV- 509 (673)
Q Consensus 444 ~~~~v~------~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-------g~~gllV- 509 (673)
....++ .-++..+.+.+|+.|+||+||++|.+++|+.|.+ .|-|.|+.+|....+ ...|+.|
T Consensus 448 ~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~g----VPsITTnLsGFG~~~~~~~~~~~~~GV~Vv 523 (633)
T PF05693_consen 448 HPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFG----VPSITTNLSGFGCWMQEHIEDPEEYGVYVV 523 (633)
T ss_dssp --S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT------EEEETTBHHHHHHHTTS-HHGGGTEEEE
T ss_pred eeccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcC----CceeeccchhHHHHHHHhhccCcCCcEEEE
Confidence 443333 2467889999999999999999999999999994 899999999987655 1356665
Q ss_pred CC--CC----HHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHHHh
Q 005855 510 NP--WN----ITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDT 562 (673)
Q Consensus 510 nP--~D----~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~~~ 562 (673)
+= .+ ++++|+.|.+...++..+|.....+..+.....+|.....-|.++-..+
T Consensus 524 dR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~A 582 (633)
T PF05693_consen 524 DRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLA 582 (633)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 23 4567777777778887777665555544445567666666565554443
No 106
>PLN03017 trehalose-phosphatase
Probab=98.83 E-value=7.1e-09 Score=111.82 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=65.0
Q ss_pred CcchHHHHHHHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHH
Q 005855 576 SLREADSIERYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDK 655 (673)
Q Consensus 576 ~L~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~ 655 (673)
.|+.-+-+.++.+.++++|||||||||+|++++| ..+.+++++.++|++|++ ...|+|+|||++..+++
T Consensus 96 al~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p---------~~a~i~~~~~~aL~~La~--~~~vaIvSGR~~~~l~~ 164 (366)
T PLN03017 96 ALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDP---------DKAFMSSKMRRTVKKLAK--CFPTAIVTGRCIDKVYN 164 (366)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCc---------ccccCCHHHHHHHHHHhc--CCcEEEEeCCCHHHHHH
Confidence 3444455566677889999999999999999988 567899999999999995 47899999999999999
Q ss_pred Hhcccccceeec
Q 005855 656 VLDLVLFIFFSG 667 (673)
Q Consensus 656 ~~~~~~~~~~~~ 667 (673)
+++. ..+.++|
T Consensus 165 ~~~l-~~l~l~g 175 (366)
T PLN03017 165 FVKL-AELYYAG 175 (366)
T ss_pred hhcc-cCceEEE
Confidence 9765 4444443
No 107
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.69 E-value=3.5e-08 Score=103.34 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=57.1
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+++||+||||||+++..+| ....+++++++.|+.|++++++.|+|+|||+...++++++.+.
T Consensus 14 ~~li~~D~DGTLl~~~~~p---------~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHP---------DQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred CEEEEEecCCCCCCCCCCc---------ccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 7899999999999998888 5678899999999999998899999999999999999998754
No 108
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.60 E-value=7e-06 Score=90.55 Aligned_cols=135 Identities=17% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCceEEEe--ecccc-cCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCc
Q 005855 362 GRKVMLGV--DRLDM-IKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTA 438 (673)
Q Consensus 362 ~~~iIl~V--gRLd~-~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~ 438 (673)
++++|+.+ +|..+ .|+++.+++|++.+.+++|+++ +++++.+. ... ..++++.... +. +
T Consensus 190 ~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~----~vi~~~~~----~~~----~~~~~~~~~~----~~-~- 251 (385)
T TIGR00215 190 NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLR----RVLPVVNF----KRR----LQFEQIKAEY----GP-D- 251 (385)
T ss_pred CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeE----EEEEeCCc----hhH----HHHHHHHHHh----CC-C-
Confidence 55665433 59887 7999999999999988888754 54443221 111 1222332222 11 1
Q ss_pred ccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC-----------------Cchhh
Q 005855 439 VPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA-----------------GAAQS 501 (673)
Q Consensus 439 ~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a-----------------G~~~~ 501 (673)
..+.++.+ +...+|++||++|.+| |.+.+|+|+|+ .|+|++.-. +.+..
T Consensus 252 ~~v~~~~~-----~~~~~l~aADl~V~~S-----Gt~tlEa~a~G----~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~ni 317 (385)
T TIGR00215 252 LQLHLIDG-----DARKAMFAADAALLAS-----GTAALEAALIK----TPMVVGYRMKPLTFLIARRLVKTDYISLPNI 317 (385)
T ss_pred CcEEEECc-----hHHHHHHhCCEEeecC-----CHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHHHcCCeeeccHH
Confidence 13444432 3467999999999999 77888999995 788877322 22222
Q ss_pred c-cCceE---EECCCCHHHHHHHHHHHhcCC
Q 005855 502 L-GAGAI---LVNPWNITEVANAIARALNMS 528 (673)
Q Consensus 502 l-g~~gl---lVnP~D~~~lA~aI~~aL~m~ 528 (673)
+ +.+++ +-+-.+++.+++++.++|+.+
T Consensus 318 l~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 318 LANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred hcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 2 22211 113357889999999999876
No 109
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=98.59 E-value=2.6e-07 Score=80.40 Aligned_cols=88 Identities=28% Similarity=0.341 Sum_probs=72.8
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRHWHN 539 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~ 539 (673)
|++.|+..+|++...+|+|||| +|+|.+...+..+.+ |..++.++ |+++++++|..+|+.| +++++..+++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G----~~vi~~~~~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~-~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACG----TPVISDDSPGLREIFEDGEHIITYN--DPEELAEKIEYLLENP-EERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCC----CeEEECChHHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCH-HHHHHHHHHH
Confidence 4677888999999999999994 667766677777777 55688888 9999999999999965 5888888999
Q ss_pred hHHHh-hCCHHHHHHHHH
Q 005855 540 FTHVT-THTAQEWAETFV 556 (673)
Q Consensus 540 ~~~v~-~~~~~~W~~~fl 556 (673)
+++|. +|++..-++.|+
T Consensus 74 ~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 88886 778777777665
No 110
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.27 E-value=1.2e-05 Score=89.90 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 458 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~ 458 (673)
...|+|++.+.++.|++. |=+ |.++ + +...+.++ .+ | ..++.+.+ +....+..+|.
T Consensus 291 s~~I~~i~~Lv~~lPd~~----f~I-ga~t--e------~s~kL~~L-~~----y-----~nvvly~~-~~~~~l~~ly~ 346 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYH----FHI-AALT--E------MSSKLMSL-DK----Y-----DNVKLYPN-ITTQKIQELYQ 346 (438)
T ss_pred HHHHHHHHHHHHhCCCcE----EEE-EecC--c------ccHHHHHH-Hh----c-----CCcEEECC-cChHHHHHHHH
Confidence 899999999999999865 443 5433 1 12334444 22 2 23555554 44567889999
Q ss_pred HcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe-C-CCCchhhccCceEEECCCCHHHHHHHHHHHhcCCH
Q 005855 459 VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS-E-FAGAAQSLGAGAILVNPWNITEVANAIARALNMSP 529 (673)
Q Consensus 459 ~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS-e-~aG~~~~lg~~gllVnP~D~~~lA~aI~~aL~m~~ 529 (673)
.||+++.+|..||+++.+.||+.. |.+|+| + ..|..+.+ ..|.+|++.|+++|+++|.++|+.+.
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~-----G~pI~afd~t~~~~~~i-~~g~l~~~~~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEY-----NLLILGFEETAHNRDFI-ASENIFEHNEVDQLISKLKDLLNDPN 413 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHc-----CCcEEEEecccCCcccc-cCCceecCCCHHHHHHHHHHHhcCHH
Confidence 999999999999999999999997 555555 3 33555555 56999999999999999999999764
No 111
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.0019 Score=70.65 Aligned_cols=233 Identities=19% Similarity=0.189 Sum_probs=144.5
Q ss_pred chHHHHhh-hcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeec-CcChhhhhhhhcCChhHHHHHH
Q 005855 278 RSDLLRAV-LAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPI-GIDSERFIRALEINPVQVHIKE 355 (673)
Q Consensus 278 r~~il~~l-l~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~-GID~~~f~~~~~~~~~~~~~~~ 355 (673)
++.+.+.| ..-|+|.-|+..+++.|.+ ||... |.+..| -.|.+ ..+........
T Consensus 167 ~~~~~~~~~~~i~li~aQse~D~~Rf~~-----LGa~~-------------v~v~GNlKfd~~------~~~~~~~~~~~ 222 (419)
T COG1519 167 LKFLARLLFKNIDLILAQSEEDAQRFRS-----LGAKP-------------VVVTGNLKFDIE------PPPQLAAELAA 222 (419)
T ss_pred HHHHHHHHHHhcceeeecCHHHHHHHHh-----cCCcc-------------eEEecceeecCC------CChhhHHHHHH
Confidence 34455554 3679999999999999974 55331 222211 01110 11223345566
Q ss_pred HHHHhcC-CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccC
Q 005855 356 LQETFAG-RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFG 434 (673)
Q Consensus 356 lr~~~~~-~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g 434 (673)
+|..+++ +++++..+. ...--...++|+..+++++|+.. ||+| | ..||. ...+++++.+.|-+++
T Consensus 223 ~r~~l~~~r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~l----lIlV--P---RHpER---f~~v~~l~~~~gl~~~ 288 (419)
T COG1519 223 LRRQLGGHRPVWVAAST--HEGEEEIILDAHQALKKQFPNLL----LILV--P---RHPER---FKAVENLLKRKGLSVT 288 (419)
T ss_pred HHHhcCCCCceEEEecC--CCchHHHHHHHHHHHHhhCCCce----EEEe--c---CChhh---HHHHHHHHHHcCCeEE
Confidence 7777776 899998888 33334447899999999999752 3333 3 34443 4567778877775554
Q ss_pred CCCc-------ccEEEeCCCCCHHHHHHHHHHcCEEEEcC-CCcCCChhHHHHHhhccCCCceEEEe----CCCCchhhc
Q 005855 435 TLTA-------VPIHHLDRSLDFPALCALYAVTDVALVTS-LRDGMNLVSYEFVACQDLKKGVLILS----EFAGAAQSL 502 (673)
Q Consensus 435 ~~~~-------~pV~~~~~~v~~~el~aly~~ADv~vv~S-l~EGf~Lv~lEamA~~~~~~g~lVlS----e~aG~~~~l 502 (673)
.-+. ++|.. .. +.-|+..+|+.|||+.+-- +-+-=|=-++|+.+++ .|+|.. .|.-+++.+
T Consensus 289 ~rS~~~~~~~~tdV~l-~D--tmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~----~pvi~Gp~~~Nf~ei~~~l 361 (419)
T COG1519 289 RRSQGDPPFSDTDVLL-GD--TMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFG----TPVIFGPYTFNFSDIAERL 361 (419)
T ss_pred eecCCCCCCCCCcEEE-Ee--cHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcC----CCEEeCCccccHHHHHHHH
Confidence 3221 23432 21 4679999999999988764 3322233469999994 666654 344455545
Q ss_pred -c-CceEEECCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHHHHHHH
Q 005855 503 -G-AGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELN 560 (673)
Q Consensus 503 -g-~~gllVnP~D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~fl~~L~ 560 (673)
. .+|+.|+ |.+.+++++...++. +++|.++.++..+.+.++. .=.++.++.|+
T Consensus 362 ~~~ga~~~v~--~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~v~~~~--gal~r~l~~l~ 416 (419)
T COG1519 362 LQAGAGLQVE--DADLLAKAVELLLAD-EDKREAYGRAGLEFLAQNR--GALARTLEALK 416 (419)
T ss_pred HhcCCeEEEC--CHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhh--HHHHHHHHHhh
Confidence 2 3567776 477888888777775 6788888888888887662 33344444443
No 112
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.98 E-value=1.1e-05 Score=80.53 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=47.4
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
||++|+||||++.. ...+++++.+.|++|.++. ..++|+|||+...+++++..++
T Consensus 1 li~~D~DgTL~~~~-------------~~~~~~~~~~~l~~l~~~g-~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPN-------------AHELSPETIEALERLREAG-VKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCC-------------CCcCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHhCC
Confidence 58999999999741 1357799999999999986 8999999999999999998755
No 113
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.029 Score=59.80 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=112.3
Q ss_pred CCceEEEeecccccCChHHHHHHHHHHHHhCc-C--ccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCc
Q 005855 362 GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENS-D--WRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTA 438 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P-~--~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~ 438 (673)
...++++--...+-..+--+++|+..+-++.- + --.++. .+|++ .||..+.+.++|++. .|
T Consensus 254 ~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~ll-ciITG----KGPlkE~Y~~~I~~~-----------~~ 317 (444)
T KOG2941|consen 254 RPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLL-CIITG----KGPLKEKYSQEIHEK-----------NL 317 (444)
T ss_pred CCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEE-EEEcC----CCchhHHHHHHHHHh-----------cc
Confidence 34677788889999999999999986532211 0 011233 33432 456666677777765 46
Q ss_pred ccEEEeCCCCCHHHHHHHHHHcCE--EEEcCCCcCCCh--hHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCC
Q 005855 439 VPIHHLDRSLDFPALCALYAVTDV--ALVTSLRDGMNL--VSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPW 512 (673)
Q Consensus 439 ~pV~~~~~~v~~~el~aly~~ADv--~vv~Sl~EGf~L--v~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~ 512 (673)
..|.+.+-.+.-++.+.++..||. ++.||. -|+-| -+....-|+ .|+++-.|.-..|.+ |.||++++
T Consensus 318 ~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSS-SGLDLPMKVVDMFGcg----lPvcA~~fkcl~ELVkh~eNGlvF~-- 390 (444)
T KOG2941|consen 318 QHVQVCTPWLEAEDYPKLLASADLGVCLHTSS-SGLDLPMKVVDMFGCG----LPVCAVNFKCLDELVKHGENGLVFE-- 390 (444)
T ss_pred cceeeeecccccccchhHhhccccceEeeecC-cccCcchhHHHhhcCC----CceeeecchhHHHHHhcCCCceEec--
Confidence 678877888899999999999995 556664 45444 456666673 666666777666655 78999997
Q ss_pred CHHHHHHHHHHHhcC---CHHHHHHHHHHhhHHHhhCCHHHHHHHHHH
Q 005855 513 NITEVANAIARALNM---SPEEREKRHWHNFTHVTTHTAQEWAETFVS 557 (673)
Q Consensus 513 D~~~lA~aI~~aL~m---~~~er~~r~~~~~~~v~~~~~~~W~~~fl~ 557 (673)
|.+++|+.|..+++. +..+... .++.+++....+|.+...+
T Consensus 391 Ds~eLa~ql~~lf~~fp~~a~~l~~----lkkn~~e~~e~RW~~~W~~ 434 (444)
T KOG2941|consen 391 DSEELAEQLQMLFKNFPDNADELNQ----LKKNLREEQELRWDESWER 434 (444)
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHH----HHHhhHHHHhhhHHHHHHH
Confidence 899999999999972 2233332 2333444445567665433
No 114
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.04 E-value=0.00095 Score=67.70 Aligned_cols=54 Identities=9% Similarity=0.206 Sum_probs=43.4
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
++|++|+||||... ....+++..++|++|.+ ....|+|+|||+...+...+..+
T Consensus 4 kli~~DlDGTLl~~--------------~~~i~~~~~~al~~l~~-~G~~~~iaTGR~~~~~~~~~~~l 57 (230)
T PRK01158 4 KAIAIDIDGTITDK--------------DRRLSLKAVEAIRKAEK-LGIPVILATGNVLCFARAAAKLI 57 (230)
T ss_pred eEEEEecCCCcCCC--------------CCccCHHHHHHHHHHHH-CCCEEEEEcCCchHHHHHHHHHh
Confidence 79999999999963 22356899999999885 36799999999998887665443
No 115
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=96.96 E-value=0.001 Score=60.23 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=48.5
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+++||+||||++....... .....+.+++.+.|+.|.+. ...++|+||+....++.++....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------~~~~~~~~~~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------IEELELYPGVKEALKELKEK-GIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CeEEccCCceEccCccccc------cccCCcCcCHHHHHHHHHHC-CCeEEEEeCchHHHHHHHHHHcC
Confidence 4799999999986432100 02346789999999999986 57899999999999999987754
No 116
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.93 E-value=0.0012 Score=66.45 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=44.5
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+++++|+||||... ....+++..++|++|.+ ....|++.|||+...++..+..++
T Consensus 2 k~v~~DlDGTLl~~--------------~~~i~~~~~~~i~~l~~-~g~~~~~~TGR~~~~~~~~~~~l~ 56 (215)
T TIGR01487 2 KLVAIDIDGTLTEP--------------NRMISERAIEAIRKAEK-KGIPVSLVTGNTVPFARALAVLIG 56 (215)
T ss_pred cEEEEecCCCcCCC--------------CcccCHHHHHHHHHHHH-CCCEEEEEcCCcchhHHHHHHHhC
Confidence 58999999999963 23467899999999976 468999999999998877765543
No 117
>PLN02423 phosphomannomutase
Probab=96.89 E-value=0.0018 Score=67.15 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=44.7
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
+++|++|+||||... ....+++..++|++|.+ +..++|.|||+...+.+.|+..
T Consensus 7 ~~i~~~D~DGTLl~~--------------~~~i~~~~~~ai~~l~~--~i~fviaTGR~~~~~~~~~~~~ 60 (245)
T PLN02423 7 GVIALFDVDGTLTAP--------------RKEATPEMLEFMKELRK--VVTVGVVGGSDLSKISEQLGKT 60 (245)
T ss_pred ceEEEEeccCCCcCC--------------CCcCCHHHHHHHHHHHh--CCEEEEECCcCHHHHHHHhccc
Confidence 567789999999963 22356889999999985 3999999999999998888875
No 118
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.87 E-value=0.0017 Score=67.76 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=45.2
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
-+++++|+||||... ....+++.+++|++|.+. ...|+|.|||+...+...+....
T Consensus 3 ~kli~~DlDGTLl~~--------------~~~i~~~~~~ai~~l~~~-G~~~~iaTGR~~~~~~~~~~~l~ 58 (270)
T PRK10513 3 IKLIAIDMDGTLLLP--------------DHTISPAVKQAIAAARAK-GVNVVLTTGRPYAGVHRYLKELH 58 (270)
T ss_pred eEEEEEecCCcCcCC--------------CCccCHHHHHHHHHHHHC-CCEEEEecCCChHHHHHHHHHhC
Confidence 379999999999964 224678999999999764 57999999999998877766543
No 119
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.80 E-value=0.0021 Score=64.97 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=48.9
Q ss_pred EEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc----cceeeccc
Q 005855 594 LILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL----FIFFSGLL 669 (673)
Q Consensus 594 l~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~----~~~~~~~~ 669 (673)
+|+|+||||... ...++++.+++|+.|.+. ...++|.|||+...+..++...+ .|...|.+
T Consensus 1 i~~DlDGTLl~~--------------~~~i~~~~~~al~~l~~~-g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~ 65 (254)
T PF08282_consen 1 IFSDLDGTLLNS--------------DGKISPETIEALKELQEK-GIKLVIATGRSYSSIKRLLKELGIDDYFICSNGAL 65 (254)
T ss_dssp EEEECCTTTCST--------------TSSSCHHHHHHHHHHHHT-TCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTE
T ss_pred cEEEECCceecC--------------CCeeCHHHHHHHHhhccc-ceEEEEEccCcccccccccccccchhhhcccccce
Confidence 689999999873 233779999999999985 78999999999998888887544 44445554
Q ss_pred c
Q 005855 670 I 670 (673)
Q Consensus 670 ~ 670 (673)
+
T Consensus 66 i 66 (254)
T PF08282_consen 66 I 66 (254)
T ss_dssp E
T ss_pred e
Confidence 4
No 120
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.77 E-value=0.0021 Score=66.86 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=44.0
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
-++|++|+||||... ....+++.+++|++|.+. ...|++.|||....+...+..+
T Consensus 3 ~kli~~DlDGTLl~~--------------~~~i~~~~~~ai~~~~~~-G~~~~iaTGR~~~~~~~~~~~l 57 (272)
T PRK10530 3 YRVIALDLDGTLLTP--------------KKTILPESLEALARAREA-GYKVIIVTGRHHVAIHPFYQAL 57 (272)
T ss_pred ccEEEEeCCCceECC--------------CCccCHHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHhc
Confidence 379999999999963 223567889999998875 5799999999998877766554
No 121
>PTZ00174 phosphomannomutase; Provisional
Probab=96.76 E-value=0.0026 Score=65.89 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=45.6
Q ss_pred cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 590 NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
+.++|++|+||||... ....+++.+++|++|.+. ...|+|.|||+...+.+.++.
T Consensus 4 ~~klia~DlDGTLL~~--------------~~~is~~~~~ai~~l~~~-Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 4 KKTILLFDVDGTLTKP--------------RNPITQEMKDTLAKLKSK-GFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCeEEEEECcCCCcCC--------------CCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHhh
Confidence 4689999999999963 234578899999998774 688999999999988888863
No 122
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.74 E-value=0.0021 Score=66.47 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=44.0
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
+|++|+||||... ....+++..++|++|.+. ...++|+|||+...+...+..+
T Consensus 1 li~~DlDGTLl~~--------------~~~i~~~~~~~i~~l~~~-G~~~~iaTGR~~~~~~~~~~~~ 53 (256)
T TIGR00099 1 LIFIDLDGTLLND--------------DHTISPSTKEALAKLREK-GIKVVLATGRPYKEVKNILKEL 53 (256)
T ss_pred CEEEeCCCCCCCC--------------CCccCHHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHc
Confidence 5899999999974 224678899999999876 6899999999999888877654
No 123
>PRK10976 putative hydrolase; Provisional
Probab=96.69 E-value=0.0028 Score=65.89 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=44.6
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+++++|+||||... ....+++.+++|++|.+. ...|+|.|||+...+...+..++
T Consensus 3 kli~~DlDGTLl~~--------------~~~is~~~~~ai~~l~~~-G~~~~iaTGR~~~~~~~~~~~l~ 57 (266)
T PRK10976 3 QVVASDLDGTLLSP--------------DHTLSPYAKETLKLLTAR-GIHFVFATGRHHVDVGQIRDNLE 57 (266)
T ss_pred eEEEEeCCCCCcCC--------------CCcCCHHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHhcC
Confidence 68999999999964 224678899999998864 68999999999998877765543
No 124
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.63 E-value=0.0032 Score=65.89 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=44.6
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
++|++|+||||... ....+++.+++|++|.+. ...|++.|||+...+...+..+
T Consensus 3 kli~~DlDGTLl~~--------------~~~i~~~~~~ai~~l~~~-G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 3 RLAAFDMDGTLLMP--------------DHHLGEKTLSTLARLRER-DITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred cEEEEeCCCcCcCC--------------CCcCCHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHc
Confidence 68999999999963 224678999999998764 6899999999999888776554
No 125
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=96.47 E-value=0.013 Score=60.71 Aligned_cols=96 Identities=22% Similarity=0.324 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCccchhHHHHHHhhCC------CCeEEeEeccC-CC---chhhhh--cC
Q 005855 208 QSQFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNS------DMKVGWFLHTP-FP---SSEIHR--TL 275 (673)
Q Consensus 208 ~~~w~~Y~~vN~~fA~~i~~~~~~~DvVwvHDyhl~llp~~Lr~~~~------~~~Ig~flH~P-fP---~~e~fr--~l 275 (673)
.+.-..|.-.+++-++.+...-...||||+||||..++|.+||.... +.++.+++|.. |- +.+.+. .+
T Consensus 110 ~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl 189 (245)
T PF08323_consen 110 PDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGL 189 (245)
T ss_dssp TTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCC
Confidence 33344444444444444444212569999999999999999999753 69999999964 22 112221 12
Q ss_pred Ccc--------------hHHHHhhhcCCEEEEeCHHHHHHHH
Q 005855 276 PSR--------------SDLLRAVLAADLVGFHTYDYARHFV 303 (673)
Q Consensus 276 p~r--------------~~il~~ll~aDlIgF~t~~~~~~Fl 303 (673)
|+. ..+-.|+..||.|..-++.|++.-+
T Consensus 190 ~~~~~~~~~~~~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~ 231 (245)
T PF08323_consen 190 PDEYFQNLDEYEFYGQINFLKAGIVYADKVTTVSPTYAREIQ 231 (245)
T ss_dssp GGGGS-STTTTEETTEEEHHHHHHHHSSEEEESSHHHHHHTT
T ss_pred CHHHhccccccccccccCHHHHHHHhcCEeeeCCHHHHHHHh
Confidence 321 2455779999999999999987654
No 126
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.46 E-value=0.0068 Score=56.35 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=38.4
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
+++++|.||||......+- ....|.+++++.|+.|.+. ...|+++|||+...
T Consensus 2 K~i~~DiDGTL~~~~~~~y--------~~~~~~~~~ie~L~~l~~~-G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDY--------ANVAPILAVIEKLRHYKAL-GFEIVISSSRNMRT 53 (126)
T ss_pred CEEEEeCCCCcccCCCCcc--------cccccCHHHHHHHHHHHHC-CCEEEEECCCCchh
Confidence 4799999999975321110 1245788999999998764 68899999998754
No 127
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.38 E-value=0.0056 Score=63.64 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=46.1
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.+++++|+||||.... ...+++++++|++|.+. .-.|+|+|||+...+.+.+..+.
T Consensus 3 ~kli~~DlDGTLl~~~--------------~~i~~~~~~al~~~~~~-g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------KTISPETKEALARLREK-GVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred eeEEEEcCCCCccCCC--------------CccCHHHHHHHHHHHHC-CCEEEEECCCChHHHHHHHHHcC
Confidence 4799999999999752 23679999999987664 68899999999998888886544
No 128
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.24 E-value=0.0074 Score=63.22 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc-----cce
Q 005855 590 NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL-----FIF 664 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~-----~~~ 664 (673)
..+++++|.||||... ....++..+++|++|.+. ...|++.|||+...+...+..+. .|.
T Consensus 6 ~~~lI~~DlDGTLL~~--------------~~~i~~~~~~ai~~l~~~-Gi~~viaTGR~~~~i~~~~~~l~~~~~~~I~ 70 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS--------------HTYDWQPAAPWLTRLREA-QVPVILCSSKTAAEMLPLQQTLGLQGLPLIA 70 (271)
T ss_pred CCeEEEEeCccCCcCC--------------CCcCcHHHHHHHHHHHHc-CCeEEEEcCCCHHHHHHHHHHhCCCCCcEEE
Confidence 4689999999999963 123567899999998864 67899999999998877665542 344
Q ss_pred eecccc
Q 005855 665 FSGLLI 670 (673)
Q Consensus 665 ~~~~~~ 670 (673)
.-|.+|
T Consensus 71 ~NGa~I 76 (271)
T PRK03669 71 ENGAVI 76 (271)
T ss_pred eCCCEE
Confidence 445444
No 129
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.09 E-value=0.011 Score=62.07 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=47.1
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc----cceee
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL----FIFFS 666 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~----~~~~~ 666 (673)
-+++|+|.||||.... ...+++..++|++|.+. .-.++|+|||....+...+..+. .+...
T Consensus 4 ~kli~~DlDGTLl~~~--------------~~~~~~~~~ai~~l~~~-Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i~~n 68 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------TYSYEPAKPALKALKEK-GIPVIPCTSKTAAEVEVLRKELGLEDPFIVEN 68 (273)
T ss_pred ceEEEEcCcccCcCCC--------------CcCcHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCCCCEEEEc
Confidence 4689999999999631 12356788999998763 56899999999988777666543 44455
Q ss_pred cccc
Q 005855 667 GLLI 670 (673)
Q Consensus 667 ~~~~ 670 (673)
|.+|
T Consensus 69 Ga~i 72 (273)
T PRK00192 69 GAAI 72 (273)
T ss_pred CcEE
Confidence 5443
No 130
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.07 E-value=0.3 Score=55.08 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=92.1
Q ss_pred CCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 362 GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
+..++.+..++ .|=-+..++.+.++|++-|+-+ |++...+. .. ++.+.+.+.+ .|. +-..+
T Consensus 284 d~vvF~~fn~~--~KI~p~~l~~W~~IL~~vP~S~----L~L~~~~~--~~------~~~l~~~~~~----~Gv-~~~Ri 344 (468)
T PF13844_consen 284 DAVVFGSFNNL--FKISPETLDLWARILKAVPNSR----LWLLRFPA--SG------EARLRRRFAA----HGV-DPDRI 344 (468)
T ss_dssp SSEEEEE-S-G--GG--HHHHHHHHHHHHHSTTEE----EEEEETST--TH------HHHHHHHHHH----TTS--GGGE
T ss_pred CceEEEecCcc--ccCCHHHHHHHHHHHHhCCCcE----EEEeeCCH--HH------HHHHHHHHHH----cCC-ChhhE
Confidence 44444445554 5677899999999999999754 66665443 11 1223333333 232 22346
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCc-h-----hhc---cCceEEECCC
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGA-A-----QSL---GAGAILVNPW 512 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~-~-----~~l---g~~gllVnP~ 512 (673)
+| .+..+.++..+.|+.+||+|-|..+-| +.+.+||+.+ |++|+|--+-. + ..| |-.-++. .
T Consensus 345 ~f-~~~~~~~ehl~~~~~~DI~LDT~p~nG-~TTt~dALwm-----GVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA--~ 415 (468)
T PF13844_consen 345 IF-SPVAPREEHLRRYQLADICLDTFPYNG-GTTTLDALWM-----GVPVVTLPGETMASRVGASILRALGLPELIA--D 415 (468)
T ss_dssp EE-EE---HHHHHHHGGG-SEEE--SSS---SHHHHHHHHH-----T--EEB---SSGGGSHHHHHHHHHT-GGGB---S
T ss_pred EE-cCCCCHHHHHHHhhhCCEEeeCCCCCC-cHHHHHHHHc-----CCCEEeccCCCchhHHHHHHHHHcCCchhcC--C
Confidence 65 456788999999999999999987766 5788999999 67777643311 1 111 3222222 4
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHhhHHHhh---CCHHHHHHHHHHHHHH
Q 005855 513 NITEVANAIARALNMSPEEREKRHWHNFTHVTT---HTAQEWAETFVSELND 561 (673)
Q Consensus 513 D~~~lA~aI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~W~~~fl~~L~~ 561 (673)
|.++..+.-.++-+++ +.++...++.++.+.+ ++...|++.+-..++.
T Consensus 416 s~~eYv~~Av~La~D~-~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 416 SEEEYVEIAVRLATDP-ERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp SHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 6777666655555544 3455544555555433 4778888877766654
No 131
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.04 E-value=0.01 Score=60.69 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=45.2
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc----ccceeecc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV----LFIFFSGL 668 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~----~~~~~~~~ 668 (673)
++|+|+||||.... ..+++.+++|++|.+. ...|+++|||+...+...+..+ +.|..-|.
T Consensus 1 li~~DlDGTLl~~~---------------~~~~~~~~ai~~l~~~-G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa 64 (225)
T TIGR02461 1 VIFTDLDGTLLPPG---------------YEPGPAREALEELKDL-GFPIVFVSSKTRAEQEYYREELGVEPPFIVENGG 64 (225)
T ss_pred CEEEeCCCCCcCCC---------------CCchHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCc
Confidence 58999999999731 1235689999999875 6789999999998877665433 34555555
Q ss_pred cc
Q 005855 669 LI 670 (673)
Q Consensus 669 ~~ 670 (673)
+|
T Consensus 65 ~I 66 (225)
T TIGR02461 65 AI 66 (225)
T ss_pred EE
Confidence 54
No 132
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.03 E-value=1.2 Score=49.24 Aligned_cols=233 Identities=18% Similarity=0.199 Sum_probs=123.3
Q ss_pred CCCCEEEEeCccch--hHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLM--FLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACT 307 (673)
Q Consensus 230 ~~~DvVwvHDyhl~--llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~ 307 (673)
++.|+|..=||.=+ .+.+.+|++.+..++.++. ++.+|.-=++|-..++.. +|.+.- .+.+-..|++
T Consensus 81 ~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI-----~PqvWAWr~~R~~~i~~~--~D~ll~-ifPFE~~~y~--- 149 (373)
T PF02684_consen 81 EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYI-----SPQVWAWRPGRAKKIKKY--VDHLLV-IFPFEPEFYK--- 149 (373)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEE-----CCceeeeCccHHHHHHHH--HhheeE-CCcccHHHHh---
Confidence 35688888787643 5778899998888887764 344544435554444332 232211 1111122221
Q ss_pred HHhccccCCCceeeCCeeeEEEEe-ecCcChhhhhhhhcCChhHHHHHHHHHHh--cCCceEEE--eecccccCC-hHHH
Q 005855 308 RILGFEGTPEGVEDQGRLTRVAAF-PIGIDSERFIRALEINPVQVHIKELQETF--AGRKVMLG--VDRLDMIKG-IPQK 381 (673)
Q Consensus 308 r~l~~~~~~~~i~~~gr~~~v~vi-P~GID~~~f~~~~~~~~~~~~~~~lr~~~--~~~~iIl~--VgRLd~~KG-i~~~ 381 (673)
..+ .++..+ ++=+|.- .+. .. . ...++.+ .++++|.. =+|-.+.|- ++..
T Consensus 150 --------~~g-------~~~~~VGHPl~d~~--~~~---~~-~---~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~ 205 (373)
T PF02684_consen 150 --------KHG-------VPVTYVGHPLLDEV--KPE---PD-R---AEAREKLLDPDKPIIALLPGSRKSEIKRLLPIF 205 (373)
T ss_pred --------ccC-------CCeEEECCcchhhh--ccC---CC-H---HHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 111 111211 1112221 111 11 0 1112222 34554443 367666554 4888
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcC
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~AD 461 (673)
++|.+++.+++|+++ +++...+. .. .+.+++.....+.. .++... ..+...+++.||
T Consensus 206 l~aa~~l~~~~p~l~----fvvp~a~~-----~~---~~~i~~~~~~~~~~------~~~~~~-----~~~~~~~m~~ad 262 (373)
T PF02684_consen 206 LEAAKLLKKQRPDLQ----FVVPVAPE-----VH---EELIEEILAEYPPD------VSIVII-----EGESYDAMAAAD 262 (373)
T ss_pred HHHHHHHHHhCCCeE----EEEecCCH-----HH---HHHHHHHHHhhCCC------CeEEEc-----CCchHHHHHhCc
Confidence 999999999999864 55433221 11 22233333222211 123322 245677899999
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC-----------------Cchhhc-cCc---eEEECCCCHHHHHHH
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA-----------------GAAQSL-GAG---AILVNPWNITEVANA 520 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a-----------------G~~~~l-g~~---gllVnP~D~~~lA~a 520 (673)
+.+++| |.+.+|++..+ .|.|+.--. |..-.+ |.. =++-+-.+++.++++
T Consensus 263 ~al~~S-----GTaTLE~Al~g----~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~ 333 (373)
T PF02684_consen 263 AALAAS-----GTATLEAALLG----VPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAE 333 (373)
T ss_pred chhhcC-----CHHHHHHHHhC----CCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHH
Confidence 999999 79999999985 665554333 333322 111 122345689999999
Q ss_pred HHHHhcCCH
Q 005855 521 IARALNMSP 529 (673)
Q Consensus 521 I~~aL~m~~ 529 (673)
+..+|..++
T Consensus 334 ~~~ll~~~~ 342 (373)
T PF02684_consen 334 LLELLENPE 342 (373)
T ss_pred HHHHhcCHH
Confidence 999998764
No 133
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.00 E-value=0.0095 Score=60.08 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=40.0
Q ss_pred EEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 594 LILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 594 l~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
|++|+||||... ....+++..++|++|.+. ...+++.|||+...+...+..+
T Consensus 1 i~~DlDGTLl~~--------------~~~i~~~~~~al~~l~~~-Gi~~~~aTGR~~~~~~~~~~~l 52 (225)
T TIGR01482 1 IASDIDGTLTDP--------------NRAINESALEAIRKAESV-GIPVVLVTGNSVQFARALAKLI 52 (225)
T ss_pred CeEeccCccCCC--------------CcccCHHHHHHHHHHHHC-CCEEEEEcCCchHHHHHHHHHh
Confidence 589999999963 223568889999998764 5789999999998766655433
No 134
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.99 E-value=0.021 Score=53.83 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcc-----hHHHHh-hhcCCEEEEeCHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSR-----SDLLRA-VLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r-----~~il~~-ll~aDlIgF~t~~~~~~Fl~ 304 (673)
+.|+||+|.++...+...... +.++.+++|.+++.........+. ..+... ...+|.+..-+...++.+.
T Consensus 80 ~~DiVh~~~~~~~~~~~~~~~---~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~- 155 (177)
T PF13439_consen 80 KPDIVHIHGPPAFWIALLACR---KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELI- 155 (177)
T ss_dssp T-SEEECCTTHCCCHHHHHHH---CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHH-
T ss_pred CCCeEEecccchhHHHHHhcc---CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHH-
Confidence 569999999887765443322 789999999987421111111111 111111 3568888887765555443
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhh
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFI 341 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~ 341 (673)
+ .|.+ ..++.++|||||++.|+
T Consensus 156 ---~-~~~~-----------~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 156 ---K-FGIP-----------PEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp ---H-HT-------------SS-EEE----B-CCCH-
T ss_pred ---H-hCCc-----------ccCCEEEECCccHHHcC
Confidence 2 2322 46899999999999884
No 135
>PLN02887 hydrolase family protein
Probab=95.95 E-value=0.013 Score=68.01 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=46.7
Q ss_pred hccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 588 RSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 588 ~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
+.+-++|++|+||||... ....+++.+++|++|.+. ...|+|.|||....+...+..+
T Consensus 305 ~~~iKLIa~DLDGTLLn~--------------d~~Is~~t~eAI~kl~ek-Gi~~vIATGR~~~~i~~~l~~L 362 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLNS--------------KSQISETNAKALKEALSR-GVKVVIATGKARPAVIDILKMV 362 (580)
T ss_pred ccCccEEEEeCCCCCCCC--------------CCccCHHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHh
Confidence 345679999999999963 224678999999999875 6789999999999887776544
No 136
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.90 E-value=0.012 Score=59.51 Aligned_cols=54 Identities=7% Similarity=0.027 Sum_probs=41.3
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
++++|.||||.... ...++..+++|++|.+ ....|+|+|||+...++..+..+.
T Consensus 1 ~i~~DlDGTLL~~~--------------~~~~~~~~~~l~~l~~-~gi~~~i~TgR~~~~~~~~~~~l~ 54 (221)
T TIGR02463 1 WVFSDLDGTLLDSH--------------SYDWQPAAPWLTRLQE-AGIPVILCTSKTAAEVEYLQKALG 54 (221)
T ss_pred CEEEeCCCCCcCCC--------------CCCcHHHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcC
Confidence 58999999999632 1133458899999866 356899999999998887776543
No 137
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.84 E-value=0.36 Score=52.69 Aligned_cols=251 Identities=15% Similarity=0.113 Sum_probs=130.0
Q ss_pred CCCCEEEEeCccc--hhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHL--MFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACT 307 (673)
Q Consensus 230 ~~~DvVwvHDyhl--~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~ 307 (673)
++.|++..=|+.= +.+...+|+..|+.||.++. -| .+|.--|.|...+.. .+|++.--.+-. ..|.+
T Consensus 84 ~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV---~P--sVWAWr~~Ra~~i~~--~~D~lLailPFE-~~~y~--- 152 (381)
T COG0763 84 NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYV---SP--SVWAWRPKRAVKIAK--YVDHLLAILPFE-PAFYD--- 152 (381)
T ss_pred cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEE---Cc--ceeeechhhHHHHHH--HhhHeeeecCCC-HHHHH---
Confidence 4568887767553 35788899999999998765 23 344333444222222 344432111111 11111
Q ss_pred HHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh----cCCceEEEe-ecc-cccCChHHH
Q 005855 308 RILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF----AGRKVMLGV-DRL-DMIKGIPQK 381 (673)
Q Consensus 308 r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~----~~~~iIl~V-gRL-d~~KGi~~~ 381 (673)
-.|.+ ..|=|+ .=.|.-.+.+ ..+..|+++ ..+.+.+.. +|- +-.+-.+..
T Consensus 153 -k~g~~-----~~yVGH--------pl~d~i~~~~---------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f 209 (381)
T COG0763 153 -KFGLP-----CTYVGH--------PLADEIPLLP---------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPF 209 (381)
T ss_pred -hcCCC-----eEEeCC--------hhhhhccccc---------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHH
Confidence 00110 112121 1122111111 111244444 234444443 333 445667788
Q ss_pred HHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcC
Q 005855 382 LLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 461 (673)
Q Consensus 382 L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~AD 461 (673)
++|++.+.+++|+.+ ++.-.. .+.|+.+..+ ....... .+.. .+...+....+..||
T Consensus 210 ~~a~~~l~~~~~~~~----~vlp~~-----~~~~~~~~~~---~~~~~~~-------~~~~----~~~~~~~~~a~~~aD 266 (381)
T COG0763 210 VQAAQELKARYPDLK----FVLPLV-----NAKYRRIIEE---ALKWEVA-------GLSL----ILIDGEKRKAFAAAD 266 (381)
T ss_pred HHHHHHHHhhCCCce----EEEecC-----cHHHHHHHHH---Hhhcccc-------CceE----EecCchHHHHHHHhh
Confidence 899999999999876 443221 1333333322 2111000 0111 123456778899999
Q ss_pred EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhh-cc---------------CceEEEC-----CCCHHHHHHH
Q 005855 462 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQS-LG---------------AGAILVN-----PWNITEVANA 520 (673)
Q Consensus 462 v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~-lg---------------~~gllVn-----P~D~~~lA~a 520 (673)
+.+..| |.+.+|++.|+ .|.|++--...-.. +. .+-.+|+ -..++.+|++
T Consensus 267 ~al~aS-----GT~tLE~aL~g----~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~ 337 (381)
T COG0763 267 AALAAS-----GTATLEAALAG----TPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARA 337 (381)
T ss_pred HHHHhc-----cHHHHHHHHhC----CCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHH
Confidence 999999 79999999995 77777754433322 10 1111111 1347899999
Q ss_pred HHHHhcCCH--HHHHHHHHHhhHHHhhC
Q 005855 521 IARALNMSP--EEREKRHWHNFTHVTTH 546 (673)
Q Consensus 521 I~~aL~m~~--~er~~r~~~~~~~v~~~ 546 (673)
+..++..+. ++..+....+++.+++.
T Consensus 338 l~~ll~~~~~~~~~~~~~~~l~~~l~~~ 365 (381)
T COG0763 338 LEELLLNGDRREALKEKFRELHQYLRED 365 (381)
T ss_pred HHHHhcChHhHHHHHHHHHHHHHHHcCC
Confidence 999998762 23334445556666555
No 138
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.76 E-value=0.019 Score=66.98 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=47.1
Q ss_pred HHHHHhhc---cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhc
Q 005855 582 SIERYLRS---NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLD 658 (673)
Q Consensus 582 ~~~~y~~s---~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~ 658 (673)
++..|..+ +++++|+|+||||..... ..++..+++|+.|.+. ...|++.|||+...++..+.
T Consensus 404 ~~~~~~~~~~~~~KLIfsDLDGTLLd~d~--------------~i~~~t~eAL~~L~ek-GI~~VIATGRs~~~i~~l~~ 468 (694)
T PRK14502 404 ARPSRLPSSGQFKKIVYTDLDGTLLNPLT--------------YSYSTALDALRLLKDK-ELPLVFCSAKTMGEQDLYRN 468 (694)
T ss_pred hhcccCCCcCceeeEEEEECcCCCcCCCC--------------ccCHHHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHH
Confidence 34444443 478999999999997421 2345778999998864 57899999999998877765
Q ss_pred cc
Q 005855 659 LV 660 (673)
Q Consensus 659 ~~ 660 (673)
.+
T Consensus 469 ~L 470 (694)
T PRK14502 469 EL 470 (694)
T ss_pred Hc
Confidence 44
No 139
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=95.70 E-value=0.019 Score=53.05 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=46.1
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC--------HHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD--------RNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~--------~~~L~~~~~~~~ 661 (673)
|+++||+||||+..... ..+.....+.+.+.++|+.|.+. ...++|+|+.. .+.+++++....
T Consensus 1 k~~~~D~dgtL~~~~~~------~~~~~~~~~~~~v~~~l~~L~~~-g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~ 71 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY------VDDEDERILYPEVPDALAELKEA-GYKVVIVTNQSGIGRGKFSSGRVARRLEELG 71 (132)
T ss_pred CEEEEeCCCceecCCCC------CCCHHHheeCCCHHHHHHHHHHC-CCEEEEEECCccccccHHHHHHHHHHHHHCC
Confidence 67999999999952110 00113456789999999999754 68999999999 777777776544
No 140
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.62 E-value=0.018 Score=59.75 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=41.0
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
++++|+||||..... . ..+..+++|+.|.+. ...|+++|||+...+..++..+.
T Consensus 1 li~~DlDGTll~~~~-------------~-~~~~~~~~i~~l~~~-g~~~~~~TgR~~~~~~~~~~~~~ 54 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-------------Y-DWGPAKEVLERLQEL-GIPVIPCTSKTAAEVEYLRKELG 54 (256)
T ss_pred CEEEcCCCCCcCCCC-------------c-CchHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcC
Confidence 589999999996421 1 223578899998764 67899999999998887776543
No 141
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.62 E-value=0.022 Score=60.19 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.4
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
++||+|+||||..... ..++..+++|++|.+. ...|++.|||+...++..+..+.
T Consensus 2 KLIftDLDGTLLd~~~--------------~~~~~a~~aL~~Lk~~-GI~vVlaTGRt~~ev~~l~~~Lg 56 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF--------------NSYGAARQALAALERR-SIPLVLYSLRTRAQLEHLCRQLR 56 (302)
T ss_pred cEEEEeCCCCCcCCCC--------------cCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC
Confidence 6899999999997421 2346788999999875 78899999999998777665543
No 142
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.61 E-value=0.02 Score=55.24 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=42.5
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHH---HHhcc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLD---KVLDL 659 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~---~~~~~ 659 (673)
++++|.||||+.... -+....-. .....++.+.+++++|.+. .+.|+++|||.....+ +|+..
T Consensus 1 iVisDIDGTL~~sd~-~~~~~~~~--~~~~~~~~~~~a~~~l~~~-G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDV-LGHVVPII--GKDWTHPGVAKLYRDIQNN-GYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCccccc-cccccccc--ccCcCCHHHHHHHHHHHHc-CCeEEEEcCCcHHHHHHHHHHHHH
Confidence 478999999996421 00000000 0135689999999999875 6889999999987653 55544
No 143
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.50 E-value=0.02 Score=59.10 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=42.0
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
+.+++.|+||||.+..+ . ....++++.+.++++.+. ...++++|||+...+.+..
T Consensus 1 ~~li~tDlDGTLl~~~~-~----------~~~~~~~~~~~i~~~~~~-gi~fv~aTGR~~~~~~~~~ 55 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTD-G----------DNQALLRLNALLEDHRGE-DSLLVYSTGRSPHSYKELQ 55 (249)
T ss_pred CeEEEEcCCCcCcCCCC-C----------ChHHHHHHHHHHHHhhcc-CceEEEEcCCCHHHHHHHH
Confidence 45799999999997321 1 123458999999998864 4599999999998888773
No 144
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.33 E-value=0.014 Score=59.63 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=37.7
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
|+++|+||||.+.. + ..++. .+.++ + .+....++|+|||+...+.+.+....
T Consensus 1 li~~DlDgTLl~~~--~------------~~~~~-~~~~~-~-~~~gi~~viaTGR~~~~v~~~~~~l~ 52 (236)
T TIGR02471 1 LIITDLDNTLLGDD--E------------GLASF-VELLR-G-SGDAVGFGIATGRSVESAKSRYAKLN 52 (236)
T ss_pred CeEEeccccccCCH--H------------HHHHH-HHHHH-h-cCCCceEEEEeCCCHHHHHHHHHhCC
Confidence 58999999999731 1 12233 36666 4 45567899999999999999987654
No 145
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=94.88 E-value=3.2 Score=44.95 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=90.2
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEE-EEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEE
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQ-IAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIH 442 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvq-vg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~ 442 (673)
..|+-=-.-|++-++...|+++.+.... ++.+++ .+.| ...+++.++|.+...++ ||.. .+.
T Consensus 186 ltILvGNSgd~sNnHieaL~~L~~~~~~------~~kIivPLsYg-----~~n~~Yi~~V~~~~~~l---F~~~---~~~ 248 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHIEALEALKQQFGD------DVKIIVPLSYG-----ANNQAYIQQVIQAGKEL---FGAE---NFQ 248 (360)
T ss_pred eEEEEcCCCCCCccHHHHHHHHHHhcCC------CeEEEEECCCC-----CchHHHHHHHHHHHHHh---cCcc---cee
Confidence 3333334568888888888877764321 233332 2222 11345566676665553 4432 345
Q ss_pred EeCCCCCHHHHHHHHHHcCEEEEcCCC-cCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEE----CCCCHHHH
Q 005855 443 HLDRSLDFPALCALYAVTDVALVTSLR-DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILV----NPWNITEV 517 (673)
Q Consensus 443 ~~~~~v~~~el~aly~~ADv~vv~Sl~-EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllV----nP~D~~~l 517 (673)
.++..++.+|+.++++.||++++...| .|+|..++= +.+ |.++++|+-.-....+.+.++.| +.-|...+
T Consensus 249 iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lL-l~~----G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v 323 (360)
T PF07429_consen 249 ILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLL-LQL----GKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALV 323 (360)
T ss_pred EhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHH-HHc----CCeEEEecCChHHHHHHhCCCeEEeccccCCHHHH
Confidence 568899999999999999999999975 999987642 444 48899999887777774445443 44566666
Q ss_pred HHHHHHHhc
Q 005855 518 ANAIARALN 526 (673)
Q Consensus 518 A~aI~~aL~ 526 (673)
++|=.++..
T Consensus 324 ~ea~rql~~ 332 (360)
T PF07429_consen 324 REAQRQLAN 332 (360)
T ss_pred HHHHHHHhh
Confidence 665554443
No 146
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=94.81 E-value=0.059 Score=56.97 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=45.2
Q ss_pred CeEEEEcccccccCCCCCCCCCCcccccccc-CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMEL-KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~-~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
..+++||+||||..... .. ..+|++.++|++|.+. ...++|+|++++...+..+....
T Consensus 126 ~kvIvFDLDgTLi~~~~------------~v~irdPgV~EaL~~Lkek-GikLaIaTS~~Re~v~~~L~~lG 184 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEE------------PVRIRDPRIYDSLTELKKR-GCILVLWSYGDRDHVVESMRKVK 184 (301)
T ss_pred ceEEEEecCCCCcCCCC------------ccccCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHcC
Confidence 57999999999997532 12 2258999999999985 56889999999987777666544
No 147
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=94.64 E-value=1.2 Score=49.64 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=80.4
Q ss_pred eEEEeec-ccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccc------cCCCC
Q 005855 365 VMLGVDR-LDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGR------FGTLT 437 (673)
Q Consensus 365 iIl~VgR-Ld~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~------~g~~~ 437 (673)
+|+.-.| =+-.++++.+++|++.+.++ |+ +.++....+. .++..+++.+.+. .++.. .....
T Consensus 209 llLpGSR~ae~~~~lp~~l~al~~L~~~-~~----~~~v~~~~~~----~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~ 277 (396)
T TIGR03492 209 ALLPGSRPPEAYRNLKLLLRALEALPDS-QP----FVFLAAIVPS----LSLEKLQAILEDL--GWQLEGSSEDQTSLFQ 277 (396)
T ss_pred EEECCCCHHHHHccHHHHHHHHHHHhhC-CC----eEEEEEeCCC----CCHHHHHHHHHhc--CceecCCccccchhhc
Confidence 3445566 35567889999999998654 43 4455444332 2233343333221 11100 00000
Q ss_pred cccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCc------hhh---ccCceEE
Q 005855 438 AVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGA------AQS---LGAGAIL 508 (673)
Q Consensus 438 ~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~------~~~---lg~~gll 508 (673)
...+.++ ....++..+|+.||++|..|= -+..|+++++ .|.|+--+.+. .+. +-..++.
T Consensus 278 ~~~~~v~---~~~~~~~~~l~~ADlvI~rSG-----t~T~E~a~lg----~P~Ilip~~~~q~na~~~~~~~~l~g~~~~ 345 (396)
T TIGR03492 278 KGTLEVL---LGRGAFAEILHWADLGIAMAG-----TATEQAVGLG----KPVIQLPGKGPQFTYGFAEAQSRLLGGSVF 345 (396)
T ss_pred cCceEEE---echHhHHHHHHhCCEEEECcC-----HHHHHHHHhC----CCEEEEeCCCCHHHHHHHHhhHhhcCCEEe
Confidence 0012221 123678999999999999863 5669999995 67777653222 111 1024555
Q ss_pred ECCCCHHHHHHHHHHHhcCC
Q 005855 509 VNPWNITEVANAIARALNMS 528 (673)
Q Consensus 509 VnP~D~~~lA~aI~~aL~m~ 528 (673)
+...+++.++++|.++|+++
T Consensus 346 l~~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 346 LASKNPEQAAQVVRQLLADP 365 (396)
T ss_pred cCCCCHHHHHHHHHHHHcCH
Confidence 56678899999999999854
No 148
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=94.39 E-value=9 Score=41.81 Aligned_cols=243 Identities=15% Similarity=0.094 Sum_probs=118.8
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhh--hcCCEEEEeCHHHHHHHHHHHHH
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAV--LAADLVGFHTYDYARHFVSACTR 308 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~l--l~aDlIgF~t~~~~~~Fl~~~~r 308 (673)
.+|+|.||.=-.-.++..+-...-+++|+.. |---=+.|.. .|.-++..+-+ .-||+----|..++++.++
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hi-eaGlRs~d~~--~g~~de~~R~~i~~la~lhf~~t~~~~~~L~~---- 139 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFYLNIPVAHI-EAGLRSGDRT--EGMPDEINRHAIDKLAHLHFAPTEEARERLLQ---- 139 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHHTT-EEEEE-S-----S-TT--SSTTHHHHHHHHHHH-SEEEESSHHHHHHHHH----
T ss_pred CCCEEEEEcCCchHHHHHHHHHHhCCCEEEe-cCCCCccccC--CCCchhhhhhhhhhhhhhhccCCHHHHHHHHh----
Confidence 3489998775555555555555567777653 2211111211 12223333332 2466666667666666543
Q ss_pred HhccccCCCceeeCCeeeEEEEe-ecCcChhhhhhhhcCChhHHHHHHHHHHhcCCceEEEeeccccc---CChHHHHHH
Q 005855 309 ILGFEGTPEGVEDQGRLTRVAAF-PIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMI---KGIPQKLLA 384 (673)
Q Consensus 309 ~l~~~~~~~~i~~~gr~~~v~vi-P~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~---KGi~~~L~A 384 (673)
.|.+ ..+|.++ ..++|.-........+.. ....+.....++.+++..-|.... ........+
T Consensus 140 -~G~~-----------~~rI~~vG~~~~D~l~~~~~~~~~~~--~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~ 205 (346)
T PF02350_consen 140 -EGEP-----------PERIFVVGNPGIDALLQNKEEIEEKY--KNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEA 205 (346)
T ss_dssp -TT-------------GGGEEE---HHHHHHHHHHHTTCC-H--HHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHH
T ss_pred -cCCC-----------CCeEEEEChHHHHHHHHhHHHHhhhh--hhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHH
Confidence 1221 2244444 445665432221111111 011221122344445555555433 346677778
Q ss_pred HHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEE
Q 005855 385 FEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVAL 464 (673)
Q Consensus 385 f~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~v 464 (673)
++.+.+. ++ +.+|....++ + .....+.+...+++ .+++ ..+++..++..+++.|+++|
T Consensus 206 l~~L~~~-~~----~~vi~~~hn~----p---~~~~~i~~~l~~~~---------~v~~-~~~l~~~~~l~ll~~a~~vv 263 (346)
T PF02350_consen 206 LKALAER-QN----VPVIFPLHNN----P---RGSDIIIEKLKKYD---------NVRL-IEPLGYEEYLSLLKNADLVV 263 (346)
T ss_dssp HHHHHHH-TT----EEEEEE--S-----H---HHHHHHHHHHTT-T---------TEEE-E----HHHHHHHHHHESEEE
T ss_pred HHHHHhc-CC----CcEEEEecCC----c---hHHHHHHHHhcccC---------CEEE-ECCCCHHHHHHHHhcceEEE
Confidence 8877776 43 3355443211 2 22333333332221 3553 46889999999999999998
Q ss_pred EcCCCcCCChhHH-HHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhcC
Q 005855 465 VTSLRDGMNLVSY-EFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNM 527 (673)
Q Consensus 465 v~Sl~EGf~Lv~l-EamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~m 527 (673)
--|- .+. ||.+++ .|+|.=...|-.++. ....++|. .|.+++.++|.++++.
T Consensus 264 gdSs------GI~eEa~~lg----~P~v~iR~~geRqe~r~~~~nvlv~-~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 264 GDSS------GIQEEAPSLG----KPVVNIRDSGERQEGRERGSNVLVG-TDPEAIIQAIEKALSD 318 (346)
T ss_dssp ESSH------HHHHHGGGGT------EEECSSS-S-HHHHHTTSEEEET-SSHHHHHHHHHHHHH-
T ss_pred EcCc------cHHHHHHHhC----CeEEEecCCCCCHHHHhhcceEEeC-CCHHHHHHHHHHHHhC
Confidence 7772 445 999994 677766667767665 23455565 8999999999999975
No 149
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=94.26 E-value=6.2 Score=43.31 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=51.7
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc--cCceEEECCCCHHHHH
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVA 518 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l--g~~gllVnP~D~~~lA 518 (673)
+. +.+.++..++.+|++.||++|-.|. | ...||.+.+ .|+|. ...-.+.+ |.+.++| +.|++++.
T Consensus 264 v~-l~~~l~~~~~l~Ll~~a~~vitdSS----g-gi~EA~~lg----~Pvv~--l~~R~e~~~~g~nvl~v-g~~~~~I~ 330 (365)
T TIGR03568 264 FR-LFKSLGQERYLSLLKNADAVIGNSS----S-GIIEAPSFG----VPTIN--IGTRQKGRLRADSVIDV-DPDKEEIV 330 (365)
T ss_pred EE-EECCCChHHHHHHHHhCCEEEEcCh----h-HHHhhhhcC----CCEEe--ecCCchhhhhcCeEEEe-CCCHHHHH
Confidence 44 5789999999999999999995542 1 228999994 55542 22222222 4556767 67899999
Q ss_pred HHHHHHhc
Q 005855 519 NAIARALN 526 (673)
Q Consensus 519 ~aI~~aL~ 526 (673)
+++.++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999654
No 150
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.22 E-value=0.097 Score=48.40 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCCCEEEEeCccchhHHHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHH-----HHhhhcCCEEEEeCHHHHHHHHH
Q 005855 230 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDL-----LRAVLAADLVGFHTYDYARHFVS 304 (673)
Q Consensus 230 ~~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~i-----l~~ll~aDlIgF~t~~~~~~Fl~ 304 (673)
.+.|+|++|+++..++..++++. .++++.+.+|..+.... .++...+ -..+..||.|...+...++.+.+
T Consensus 72 ~~~Dvv~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~----~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~ 146 (160)
T PF13579_consen 72 ERPDVVHAHSPTAGLVAALARRR-RGIPLVVTVHGTLFRRG----SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR 146 (160)
T ss_dssp ---SEEEEEHHHHHHHHHHHHHH-HT--EEEE-SS-T----------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH
T ss_pred cCCeEEEecccchhHHHHHHHHc-cCCcEEEEECCCchhhc----cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH
Confidence 46799999998877777777733 47899999997543211 1111111 24456799999999877766643
Q ss_pred HHHHHhccccCCCceeeCCeeeEEEEeecC
Q 005855 305 ACTRILGFEGTPEGVEDQGRLTRVAAFPIG 334 (673)
Q Consensus 305 ~~~r~l~~~~~~~~i~~~gr~~~v~viP~G 334 (673)
.+. ...++.++|||
T Consensus 147 -----~g~-----------~~~ri~vipnG 160 (160)
T PF13579_consen 147 -----YGV-----------PPDRIHVIPNG 160 (160)
T ss_dssp -----H--------------GGGEEE----
T ss_pred -----hCC-----------CCCcEEEeCcC
Confidence 222 24588999997
No 151
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.18 E-value=0.11 Score=48.24 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=41.6
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCC-CHHhHHHHhc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGS-DRNVLDKVLD 658 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR-~~~~L~~~~~ 658 (673)
++|++|+||||++..... .....+- ...++.+++.+.|+.|.+. ...++|+|+. ........+.
T Consensus 1 kli~~DlD~Tl~~~~~~~-~~~~~~~-~~~~~~~gv~e~L~~Lk~~-g~~l~i~Sn~~~~~~~~~~l~ 65 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIV-VGEDPII-DLEVTIKEIRDKLQTLKKN-GFLLALASYNDDPHVAYELLK 65 (128)
T ss_pred CEEEEeCCCCCCCCCccc-ccCCcch-hhHHHHHHHHHHHHHHHHC-CeEEEEEeCCCCHHHHHHHHH
Confidence 589999999999863210 0000000 0014678999999999764 5789999999 6665544443
No 152
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=7.2 Score=42.85 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCch--hh------c--cCceEEECCCC--HHHHH
Q 005855 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA--QS------L--GAGAILVNPWN--ITEVA 518 (673)
Q Consensus 451 ~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~--~~------l--g~~gllVnP~D--~~~lA 518 (673)
+++.++|+.||+++.=+= ++++-|..+++ .|.|+=-+...+ ++ + -..|+.+.-.+ .+.++
T Consensus 244 ~dm~~~~~~ADLvIsRaG----a~Ti~E~~a~g----~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~ 315 (357)
T COG0707 244 DDMAALLAAADLVISRAG----ALTIAELLALG----VPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLA 315 (357)
T ss_pred hhHHHHHHhccEEEeCCc----ccHHHHHHHhC----CCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHH
Confidence 569999999999986552 58999999995 666666555551 22 2 13466665555 88999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHH
Q 005855 519 NAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAE 553 (673)
Q Consensus 519 ~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~ 553 (673)
+.|.++++.+ +....+.++.++.........-++
T Consensus 316 ~~i~~l~~~~-~~l~~m~~~a~~~~~p~aa~~i~~ 349 (357)
T COG0707 316 ELILRLLSNP-EKLKAMAENAKKLGKPDAAERIAD 349 (357)
T ss_pred HHHHHHhcCH-HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999863 334444444444444443333333
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=93.59 E-value=0.059 Score=55.90 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=36.9
Q ss_pred CeEEEEccccccc-CCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 591 NRLLILGFNATLT-EPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 591 ~rll~lDyDGTL~-~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
++||+.|+||||+ +. ..-..++.+.|+ ....++..++++|||+.+...+.+..
T Consensus 2 ~~ll~sDlD~Tl~~~~---------------~~~~~~l~~~l~-~~~~~~~~~v~~TGRs~~~~~~~~~~ 55 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD---------------DEALARLEELLE-QQARPEILFVYVTGRSLESVLRLLRE 55 (247)
T ss_dssp SEEEEEETBTTTBHCH---------------HHHHHHHHHHHH-HHHCCGEEEEEE-SS-HHHHHHHHHH
T ss_pred CEEEEEECCCCCcCCC---------------HHHHHHHHHHHH-HhhCCCceEEEECCCCHHHHHHHHHh
Confidence 6899999999999 21 111246666666 44566778889999999988877764
No 154
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=93.01 E-value=0.18 Score=50.03 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=47.9
Q ss_pred HHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 585 RYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 585 ~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
++++-.+-|+++|-||||++. ..+.++++.+.|+.|-. +.++-+|-|.+.+-+.+.+|.
T Consensus 5 a~~r~~~~l~lfdvdgtLt~~--------------r~~~~~e~~~~l~~lr~--~v~ig~VggsDl~k~~eqlG~ 63 (252)
T KOG3189|consen 5 AAARDEETLCLFDVDGTLTPP--------------RQKVTPEMLEFLQKLRK--KVTIGFVGGSDLSKQQEQLGD 63 (252)
T ss_pred hhhcCCceEEEEecCCccccc--------------cccCCHHHHHHHHHHhh--heEEEEeecHHHHHHHHHhch
Confidence 345556679999999999984 35567899999999765 789999999999988888854
No 155
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=92.88 E-value=0.12 Score=50.56 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=38.1
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
+++|||.||||....+... ......+.+.+.++|+.|.+. .-.++|+|+.+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~------~~~~~~~~pgv~e~L~~Lk~~-G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVH------EIDNFEFIDGVIDALRELKKM-GYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCCC------CHHHeEECCCHHHHHHHHHHC-CCEEEEEeCCcc
Confidence 6899999999994322110 014566788999999999864 568999998763
No 156
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=92.57 E-value=0.25 Score=52.38 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=43.5
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++++||+||||....... ..-+|.+.++|++|.+. ...++|+|+.++...+..+....
T Consensus 128 ~~~i~~D~D~TL~~~~~~v-----------~irdp~V~EtL~eLkek-GikLaIvTNg~Re~v~~~Le~lg 186 (303)
T PHA03398 128 PHVIVFDLDSTLITDEEPV-----------RIRDPFVYDSLDELKER-GCVLVLWSYGNREHVVHSLKETK 186 (303)
T ss_pred ccEEEEecCCCccCCCCcc-----------ccCChhHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHcC
Confidence 5899999999999763211 11147999999999984 56788999887777777666544
No 157
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=92.46 E-value=0.19 Score=48.68 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=37.8
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCC
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGS 648 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR 648 (673)
+++|||.||||....+ +....+.+ ...++-+.+.+.|+.|.+. .-.++|+|..
T Consensus 2 ~~~~~d~dg~l~~~~~--~~~~~~~~-~~~~~~pgv~e~L~~L~~~-g~~l~IvSN~ 54 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP--SDFQVDAL-EKLRFEKGVIPALLKLKKA-GYKFVMVTNQ 54 (161)
T ss_pred CEEEEeCCCCccccCC--CccccCCH-HHeeECCCHHHHHHHHHHC-CCeEEEEeCC
Confidence 6799999999987432 11112222 3457789999999999874 4688999985
No 158
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=91.79 E-value=0.24 Score=51.40 Aligned_cols=53 Identities=9% Similarity=0.192 Sum_probs=40.3
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcC---CCHHhHHHHhccc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSG---SDRNVLDKVLDLV 660 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSG---R~~~~L~~~~~~~ 660 (673)
++|+||.||||.... . +.++..++|+.|.+. ...|+++|| |+...+.+.+...
T Consensus 2 ~~~~~D~DGtl~~~~-------------~--~i~~a~~~l~~l~~~-g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGK-------------E--RIPEAETFVHELQKR-DIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCC-------------e--eCcCHHHHHHHHHHC-CCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 579999999998631 1 234788999999875 567888884 8898888777654
No 159
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=91.29 E-value=0.26 Score=47.18 Aligned_cols=62 Identities=16% Similarity=0.354 Sum_probs=39.4
Q ss_pred eEEEEcccccccCCC---CCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPV---DTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~---~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+++|||.||||.... ... .+..... ...+. .+|+.|.+. ...++|+||+....++..+....
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~---~~~~~~~--~~~~~--~~i~~Lk~~-G~~i~IvTn~~~~~~~~~l~~~g 66 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNN---GEEIKAF--NVRDG--YGIRCALKS-GIEVAIITGRKAKLVEDRCKTLG 66 (154)
T ss_pred eEEEEeCceeEEcCeEEECCC---CcEEEEE--echhH--HHHHHHHHC-CCEEEEEECCCCHHHHHHHHHcC
Confidence 689999999999721 111 1111110 11112 267888654 57999999999988888776654
No 160
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=91.15 E-value=27 Score=38.25 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=49.0
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCc----hhhcc--CceEEECCC--CHH
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGA----AQSLG--AGAILVNPW--NIT 515 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~----~~~lg--~~gllVnP~--D~~ 515 (673)
+.+.++.. +++..||++| .+-|+ -+..|++++| .|+|+--..+- +..+. ..|+.+++. +.+
T Consensus 292 ~~~~~p~~---~ll~~~d~~I---~hgG~-~t~~eal~~G----vP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~ 360 (401)
T cd03784 292 VVDFVPHD---WLLPRCAAVV---HHGGA-GTTAAALRAG----VPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAE 360 (401)
T ss_pred EeCCCCHH---HHhhhhheee---ecCCc-hhHHHHHHcC----CCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHH
Confidence 45667655 5688899999 34554 6779999995 77766655541 22221 235555554 789
Q ss_pred HHHHHHHHHhc
Q 005855 516 EVANAIARALN 526 (673)
Q Consensus 516 ~lA~aI~~aL~ 526 (673)
+++++|.++|+
T Consensus 361 ~l~~al~~~l~ 371 (401)
T cd03784 361 RLAAALRRLLD 371 (401)
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 161
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=91.08 E-value=8 Score=42.41 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=62.2
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhh----c--cCceEEECC--CCHH
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQS----L--GAGAILVNP--WNIT 515 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~----l--g~~gllVnP--~D~~ 515 (673)
+.+.+++. .++..||++|..+ |.| +..|+++++ .|+|+.-..+--.. + ...|..++. .+.+
T Consensus 279 ~~~~~p~~---~ll~~~~~~I~hg---G~~-t~~Eal~~G----~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~ 347 (392)
T TIGR01426 279 VRQWVPQL---EILKKADAFITHG---GMN-STMEALFNG----VPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAE 347 (392)
T ss_pred EeCCCCHH---HHHhhCCEEEECC---Cch-HHHHHHHhC----CCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHH
Confidence 35677764 5688999988654 555 679999995 77777544432211 2 123566654 4689
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhHHHhh-CCHHHHHHHHH
Q 005855 516 EVANAIARALNMSPEEREKRHWHNFTHVTT-HTAQEWAETFV 556 (673)
Q Consensus 516 ~lA~aI~~aL~m~~~er~~r~~~~~~~v~~-~~~~~W~~~fl 556 (673)
+++++|.++|+.+ +.+++.+++.+.+.. ......++.+.
T Consensus 348 ~l~~ai~~~l~~~--~~~~~~~~l~~~~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 348 KLREAVLAVLSDP--RYAERLRKMRAEIREAGGARRAADEIE 387 (392)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999864 344444555444443 34555555443
No 162
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.88 E-value=0.22 Score=51.88 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=36.3
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
++|+||.||||...... .-.+.+...++|++|.+. ...++++|||+...
T Consensus 2 k~i~~D~DGtl~~~~~~-----------~~~~~~~a~~al~~l~~~-G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 2 KGVLLDISGVLYISDAK-----------SGVAVPGSQEAVKRLRGA-SVKVRFVTNTTKES 50 (257)
T ss_pred CEEEEeCCCeEEeCCCc-----------ccCcCCCHHHHHHHHHHC-CCeEEEEECCCCCC
Confidence 57999999999864210 012567999999998875 67899999876653
No 163
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=90.85 E-value=0.65 Score=47.99 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=46.1
Q ss_pred chHHHHHHHhhccCeEEEEcccccccCCCCC--CCCC---Cc--------ccc-------ccccCCChhHHHHHHHHhcC
Q 005855 578 READSIERYLRSNNRLLILGFNATLTEPVDT--PGRR---GD--------QIR-------EMELKLHPDLKQPLNALCHD 637 (673)
Q Consensus 578 ~~~~~~~~y~~s~~rll~lDyDGTL~~~~~~--p~~~---~~--------~~~-------~~~~~p~~~~~~~L~~L~~d 637 (673)
.++++.++..-.+...++||+||||+...+. -|.. .. ... .....|.+.+.++|+.|.+.
T Consensus 50 ~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~ 129 (237)
T TIGR01672 50 SVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred EHHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHC
Confidence 5666666666666669999999999976541 1100 00 000 02235556699999999874
Q ss_pred CCCeEEEEcCC
Q 005855 638 PKTTIVVLSGS 648 (673)
Q Consensus 638 ~~n~V~ViSGR 648 (673)
.-+++|||+|
T Consensus 130 -G~~i~iVTnr 139 (237)
T TIGR01672 130 -GDAIFFVTGR 139 (237)
T ss_pred -CCEEEEEeCC
Confidence 5689999999
No 164
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=90.63 E-value=2.1 Score=45.16 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=60.8
Q ss_pred CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEE
Q 005855 363 RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIH 442 (673)
Q Consensus 363 ~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~ 442 (673)
+++++..|-.|+.+.....++|+..+. +++ .+.+|.++.. +.++ ++++++.. + + .+.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~----~i~vv~G~~~---~~~~----~l~~~~~~-~---~-----~i~ 227 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ---INI----SITLVTGSSN---PNLD----ELKKFAKE-Y---P-----NII 227 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc---cCc----eEEEEECCCC---cCHH----HHHHHHHh-C---C-----CEE
Confidence 578999999999887777888886542 222 2333443332 2223 34444332 1 1 233
Q ss_pred EeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeC
Q 005855 443 HLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSE 494 (673)
Q Consensus 443 ~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe 494 (673)
. .+ ..+++..+|+.||+++.+ -|.++.|+++++ .|.|+-.
T Consensus 228 ~-~~--~~~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g----~P~i~i~ 267 (279)
T TIGR03590 228 L-FI--DVENMAELMNEADLAIGA-----AGSTSWERCCLG----LPSLAIC 267 (279)
T ss_pred E-Ee--CHHHHHHHHHHCCEEEEC-----CchHHHHHHHcC----CCEEEEE
Confidence 2 23 346899999999999984 458999999995 5655443
No 165
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=90.37 E-value=5.2 Score=42.84 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=81.8
Q ss_pred ceEEEee-cccccCChHHHHHHHHHHHHhCcCccCceEEEEE-EcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 364 KVMLGVD-RLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQI-AVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 364 ~iIl~Vg-RLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqv-g~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
++-+-|| .=|++-.+.+.|+++.+.+.. ++.+++. +.|+ ++ . ++.++|.+...+ .||.. .+
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~~~------~v~ii~PlsYp~-gn-~---~Yi~~V~~~~~~---lF~~~---~~ 208 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQFGD------NVKIIVPMGYPA-NN-Q---AYIEEVRQAGLA---LFGAE---NF 208 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHhCC------CeEEEEECCcCC-CC-H---HHHHHHHHHHHH---hcCcc---cE
Confidence 3444444 468999999999998877543 3434332 3332 12 3 446666666554 45532 35
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcCC-CcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEE
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTSL-RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILV 509 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~Sl-~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllV 509 (673)
..++..++.+|+.++++.||+.++.-- .+|+|..++=. .. +.|+++|.-.-.-..+.+.|+-|
T Consensus 209 ~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi-~~----G~~v~l~r~n~fwqdl~e~gv~V 272 (322)
T PRK02797 209 QILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLI-QL----GKPVVLSRDNPFWQDLTEQGLPV 272 (322)
T ss_pred EehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHH-HC----CCcEEEecCCchHHHHHhCCCeE
Confidence 667899999999999999999999876 49999887542 23 47888887666655553445444
No 166
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=90.36 E-value=0.26 Score=48.56 Aligned_cols=64 Identities=13% Similarity=0.331 Sum_probs=39.1
Q ss_pred cCeEEEEcccccccCC---CCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 590 NNRLLILGFNATLTEP---VDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~---~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.-++|++|+||||+.. ....+ ..+..... .=...++.|.+ ....|+|+||+.....+..+....
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~---~~~~~~~~----~d~~~i~~L~~-~Gi~v~I~T~~~~~~v~~~l~~lg 86 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNG---EELKAFNV----RDGYGIRCLLT-SGIEVAIITGRKSKLVEDRMTTLG 86 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCC---CEEEEEec----cchHHHHHHHH-CCCEEEEEeCCCcHHHHHHHHHcC
Confidence 4689999999999974 11111 01110101 00134555554 457899999999988888776654
No 167
>PRK10444 UMP phosphatase; Provisional
Probab=90.28 E-value=0.27 Score=51.12 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=36.1
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
++|+||.||||... ..+.+...+.|+.|.+. .-.++++|+|+...
T Consensus 2 ~~v~~DlDGtL~~~---------------~~~~p~a~~~l~~L~~~-g~~~~~~Tn~~~~~ 46 (248)
T PRK10444 2 KNVICDIDGVLMHD---------------NVAVPGAAEFLHRILDK-GLPLVLLTNYPSQT 46 (248)
T ss_pred cEEEEeCCCceEeC---------------CeeCccHHHHHHHHHHC-CCeEEEEeCCCCCC
Confidence 47999999999853 13567899999999875 57899999998743
No 168
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=90.25 E-value=0.68 Score=45.09 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=41.1
Q ss_pred cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC-HHhHHHHhc
Q 005855 590 NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD-RNVLDKVLD 658 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~-~~~L~~~~~ 658 (673)
.-+++++|+||||+... ...+.+.+.+.|+.|.+. .-.++|+|+.+ ....+.++.
T Consensus 24 ~v~~vv~D~Dgtl~~~~-------------~~~~~pgv~e~L~~Lk~~-g~~l~I~Sn~~~~~~~~~~~~ 79 (170)
T TIGR01668 24 GIKGVVLDKDNTLVYPD-------------HNEAYPALRDWIEELKAA-GRKLLIVSNNAGEQRAKAVEK 79 (170)
T ss_pred CCCEEEEecCCccccCC-------------CCCcChhHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHH
Confidence 45889999999999752 235668999999999764 46899999988 454444433
No 169
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=90.16 E-value=0.52 Score=45.26 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=40.3
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
=+|+++|.||||+.-.-.-+.-+..++.-...---. +..|.++ .-+|+|||||+..-+++...+...
T Consensus 8 IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~G-ik~l~~~----Gi~vAIITGr~s~ive~Ra~~LGI 74 (170)
T COG1778 8 IKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHG-IKLLLKS----GIKVAIITGRDSPIVEKRAKDLGI 74 (170)
T ss_pred ceEEEEeccceeecCeEEEcCCCceeeeeeccCcHH-HHHHHHc----CCeEEEEeCCCCHHHHHHHHHcCC
Confidence 489999999999974211111122222111222222 2333332 469999999999999998877653
No 170
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=90.11 E-value=0.71 Score=45.13 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=44.4
Q ss_pred hhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCC-CCeEEEEcCCC----------HHhHHH
Q 005855 587 LRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDP-KTTIVVLSGSD----------RNVLDK 655 (673)
Q Consensus 587 ~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~-~n~V~ViSGR~----------~~~L~~ 655 (673)
++..=+.++||.|.||+++. ...+++++.+.++++.+.- ...|+|+|... .+.+++
T Consensus 37 k~~Gik~li~DkDNTL~~~~-------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~ 103 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPY-------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEK 103 (168)
T ss_pred hhcCceEEEEcCCCCCCCCC-------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHH
Confidence 44556899999999999863 4456789999999998753 34799999873 345666
Q ss_pred Hhc
Q 005855 656 VLD 658 (673)
Q Consensus 656 ~~~ 658 (673)
-++
T Consensus 104 ~lg 106 (168)
T PF09419_consen 104 ALG 106 (168)
T ss_pred hhC
Confidence 665
No 171
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=89.86 E-value=0.56 Score=44.36 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=37.4
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
++|||.||||+...... ..+.. ....+.+++.++|+.|.+. .-.++|+|+.+
T Consensus 2 ~~~~d~dgtl~~~~~~~---~~~~~-~~~~~~~g~~~~l~~Lk~~-g~~~~I~Sn~~ 53 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSD---YPRSL-DDWQLRPGAVPALLTLRAA-GYTVVVVTNQS 53 (147)
T ss_pred eEEEeCCCceeccCCcc---cCCCH-HHeEEcCChHHHHHHHHHC-CCEEEEEeCCC
Confidence 68999999999763211 11111 2346789999999999875 56889999876
No 172
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=89.79 E-value=0.49 Score=46.06 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=36.5
Q ss_pred CeEEEEcccccccCCCC-CCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 591 NRLLILGFNATLTEPVD-TPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~-~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
.++++||.||||..... .+ .-+.++.-..+.+++.++|+.|-+. .-.++|+|..+.
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~---~~~~~~~~~~~~pgv~e~L~~Lk~~-G~~l~I~TN~~~ 69 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV---FPTSASDWRFLYPEIPAKLQELDDE-GYKIVIFTNQSG 69 (166)
T ss_pred CcEEEEeCCCceEecCCCCc---ccCChHHeEEecCCHHHHHHHHHHC-CCEEEEEeCCcc
Confidence 57899999999996421 00 0011111223568999999999764 578899997554
No 173
>PRK06769 hypothetical protein; Validated
Probab=88.82 E-value=0.49 Score=46.21 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=38.3
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
=|+||||-||||.+...... .....+.+++.+.|+.|.+. .-.++|+|+.+
T Consensus 4 ~~~~~~d~d~~~~~~~~~~~-------~~~~~~~pgv~e~L~~Lk~~-G~~l~I~Tn~~ 54 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTTIHY-------PGSFTLFPFTKASLQKLKAN-HIKIFSFTNQP 54 (173)
T ss_pred CcEEEEeCCCcccCCCCCCC-------HHHeEECCCHHHHHHHHHHC-CCEEEEEECCc
Confidence 37899999999987632110 03456789999999999764 57899999876
No 174
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.76 E-value=2.2 Score=46.54 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=80.4
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCC---CcCC---ChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCH
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSL---RDGM---NLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNI 514 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl---~EGf---~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~ 514 (673)
+.++....+.......++.-|+.+.=+. -++. +.-+.|+++|+ |++|.+-..+.-..++.+--++--.|.
T Consensus 239 ~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~----~~liT~~~~~~e~~f~pgk~~iv~~d~ 314 (373)
T COG4641 239 VQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCG----GFLITDYWKDLEKFFKPGKDIIVYQDS 314 (373)
T ss_pred hhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcC----CccccccHHHHHHhcCCchheEEecCH
Confidence 4444334445777888888888775443 2333 88899999995 777777666666556544334445799
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhHHH-hhCCHHHHHHHHHHHHHH
Q 005855 515 TEVANAIARALNMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELND 561 (673)
Q Consensus 515 ~~lA~aI~~aL~m~~~er~~r~~~~~~~v-~~~~~~~W~~~fl~~L~~ 561 (673)
.++.+.+..++.-+. ||++..+.+.+.| ..|+-..=+.+++..+..
T Consensus 315 kdl~~~~~yll~h~~-erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 315 KDLKEKLKYLLNHPD-ERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred HHHHHHHHHHhcCcc-hHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999998754 8888888887776 456656656666666654
No 175
>PLN02645 phosphoglycolate phosphatase
Probab=88.53 E-value=0.43 Score=51.22 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=34.8
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
-++|+||.||||.... .+.+...++|+.|.+. .-.++++|+++.
T Consensus 28 ~~~~~~D~DGtl~~~~---------------~~~~ga~e~l~~lr~~-g~~~~~~TN~~~ 71 (311)
T PLN02645 28 VETFIFDCDGVIWKGD---------------KLIEGVPETLDMLRSM-GKKLVFVTNNST 71 (311)
T ss_pred CCEEEEeCcCCeEeCC---------------ccCcCHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 3689999999998631 2446789999998875 568999999983
No 176
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=88.49 E-value=0.56 Score=51.31 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=39.3
Q ss_pred cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCC
Q 005855 590 NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGS 648 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR 648 (673)
+++++|||.||||+...... ...+.. ....|.|++.+.|..|-+ ..-.++|+|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~--y~~~~~-~~~~l~pGV~e~L~~Lk~-~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD--FQVDSL-DKLAFEPGVIPALLKLQK-AGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc--ccccCc-ccceECcCHHHHHHHHHh-CCCeEEEEECC
Confidence 46899999999999863211 111111 356788999999999964 35689999985
No 177
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=88.21 E-value=1.2 Score=42.17 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=48.3
Q ss_pred CeEEEEcccccccCCCC--CCCC-CCcc---------ccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhc
Q 005855 591 NRLLILGFNATLTEPVD--TPGR-RGDQ---------IREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLD 658 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~--~p~~-~~~~---------~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~ 658 (673)
+.+++||.||||..... .++. ...+ .......+-|.+.+.|+.|.. .-.++|+|+..++..+..+.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~--~~~l~I~Ts~~~~~~~~il~ 79 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASE--LFELVVFTAGLRMYADPVLD 79 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHh--ccEEEEEeCCcHHHHHHHHH
Confidence 56799999999998642 1111 1101 111334667899999999974 47999999999998888776
Q ss_pred ccc
Q 005855 659 LVL 661 (673)
Q Consensus 659 ~~~ 661 (673)
...
T Consensus 80 ~l~ 82 (148)
T smart00577 80 LLD 82 (148)
T ss_pred HhC
Confidence 543
No 178
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.20 E-value=0.44 Score=50.16 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=32.3
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
++|++|.||||.... .+.+++.++|+.|-+. ...++++||++
T Consensus 3 ~~~~~D~DGtl~~~~---------------~~~~ga~e~l~~L~~~-g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE---------------RVVPGAPELLDRLARA-GKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCC---------------eeCcCHHHHHHHHHHC-CCeEEEEeCCC
Confidence 579999999997631 2345688889999864 56899999965
No 179
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=87.81 E-value=0.84 Score=44.64 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=38.2
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
.+++|||.||||.-... .+.... ....|.+++.+.|+.|.+. .-.++|+|+.+
T Consensus 3 ~~~~~~d~~~t~~~~~~---~~~~~~--~~~~~~pgv~e~L~~Lk~~-g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD---GYVKSP--DEWIPIPGSIEAIARLKQA-GYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCc---cccCCH--HHeEECCCHHHHHHHHHHC-CCEEEEEeCCc
Confidence 36899999999965421 122222 2356789999999999874 57899999876
No 180
>PLN02382 probable sucrose-phosphatase
Probab=87.77 E-value=0.81 Score=51.20 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=36.2
Q ss_pred hhccCeEEEEcccccccCCCCCCCCCCccccccccCCC-hhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHH
Q 005855 587 LRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLH-PDLKQPLNALCHDPKTTIVVLSGSDRNVLDKV 656 (673)
Q Consensus 587 ~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~-~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~ 656 (673)
..+.+.+|+.|+||||.+..+ + ...+ .+....++++.+ ..-.++++|||+.....+.
T Consensus 5 ~~~~~~lI~sDLDGTLL~~~~-~-----------~~~s~~~~~~l~~~~~~-~gi~fv~aTGR~~~~~~~l 62 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDHHD-P-----------ENLSLLRFNALWEAEYR-HDSLLVFSTGRSPTLYKEL 62 (413)
T ss_pred cCCCCEEEEEcCCCcCcCCCC-c-----------cchhHHHHHHHHHHhhc-CCeeEEEEcCCCHHHHHHH
Confidence 455678899999999996421 1 1233 344444466555 3456779999996555444
No 181
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=87.74 E-value=0.71 Score=44.66 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=31.9
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCC
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGS 648 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR 648 (673)
.+.+||+||||..... +....+.+..-...++.+.+.|++|.++ .-.++|+|..
T Consensus 1 Kia~fD~DgTLi~~~s--~~~f~~~~~D~~~~~~~v~~~L~~l~~~-Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS--GKKFPKDPDDWKFFPPGVPEALRELHKK-GYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-ST--STTS-SSTCGGEEC-TTHHHHHHHHHHT-TEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCC--CCcCcCCHHHhhhcchhHHHHHHHHHhc-CCeEEEEeCc
Confidence 3689999999986422 1111111112233456799999999776 5789999844
No 182
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=87.72 E-value=47 Score=36.35 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=27.1
Q ss_pred HHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeC
Q 005855 453 LCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSE 494 (673)
Q Consensus 453 l~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe 494 (673)
...+|+.||+++..| |.+.+|++.++ .|.|+.-
T Consensus 229 ~~~~m~~aDlal~~S-----GT~TLE~al~g----~P~Vv~Y 261 (347)
T PRK14089 229 THKALLEAEFAFICS-----GTATLEAALIG----TPFVLAY 261 (347)
T ss_pred HHHHHHhhhHHHhcC-----cHHHHHHHHhC----CCEEEEE
Confidence 457899999999998 78899999995 6666643
No 183
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=87.37 E-value=1.2 Score=47.15 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=47.1
Q ss_pred cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 590 NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
+..++++|.||||....... -..-.......+.+.+.+.|+.|.+. ...++|+|||+....+..+..
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~-g~~i~i~T~r~~~~~~~~l~~ 223 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRS--PYDWTKVKEDKPNPMVVELVKMYKAA-GYEIIVVSGRDGVCEEDTVEW 223 (300)
T ss_pred CCCEEEEECCCcCcCCCCCC--ccchhhcccCCCChhHHHHHHHHHhC-CCEEEEEeCCChhhHHHHHHH
Confidence 45789999999999764310 00011112457889999999999874 678999999999866655543
No 184
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=87.09 E-value=2.3 Score=41.30 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=51.0
Q ss_pred hccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccccceeec
Q 005855 588 RSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLFIFFSG 667 (673)
Q Consensus 588 ~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~~~~~~ 667 (673)
+..-+-+++|+|.||+|+.. ...+|++++-+..|..- .-.|+|+|.-+..-...+......-++++
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~-------------~~~tpe~~~W~~e~k~~-gi~v~vvSNn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDN-------------PDATPELRAWLAELKEA-GIKVVVVSNNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred HcCCcEEEEeccCceecccC-------------CCCCHHHHHHHHHHHhc-CCEEEEEeCCCHHHHHhhhhhcCCceeec
Confidence 34457799999999999843 34578999999998874 56899999988888888887655445544
No 185
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=87.01 E-value=0.55 Score=47.43 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=31.9
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
..+.|.+.+.|+.|.+ ....++|+||.....++.++...
T Consensus 73 ~~l~pG~~e~l~~l~~-~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKE-NNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHH-cCCeEEEECCCcHHHHHHHHHHh
Confidence 4678899999999865 36789999999998888877653
No 186
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.54 E-value=57 Score=36.08 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=85.9
Q ss_pred CceEEEeeccccc-CChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccE
Q 005855 363 RKVMLGVDRLDMI-KGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPI 441 (673)
Q Consensus 363 ~~iIl~VgRLd~~-KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV 441 (673)
+.+++..-|-... +++...+.|+.++++++|+.. ++ . |.-.. +.. ++.+ +.+++.. ..|
T Consensus 205 ~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~----vi-y--p~H~~-~~v-------~e~~---~~~L~~~--~~v 264 (383)
T COG0381 205 KYILVTAHRRENVGEPLEEICEALREIAEEYPDVI----VI-Y--PVHPR-PRV-------RELV---LKRLKNV--ERV 264 (383)
T ss_pred cEEEEEcchhhcccccHHHHHHHHHHHHHhCCCce----EE-E--eCCCC-hhh-------hHHH---HHHhCCC--CcE
Confidence 4566677887666 999999999999999998753 22 2 32111 222 2222 1112221 134
Q ss_pred EEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCce-EEEeCCCCchhhccCc-eEEECCCCHHHHHH
Q 005855 442 HHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGV-LILSEFAGAAQSLGAG-AILVNPWNITEVAN 519 (673)
Q Consensus 442 ~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~-lVlSe~aG~~~~lg~~-gllVnP~D~~~lA~ 519 (673)
+ +..++...+...|+..|-+.+--| |=.--||-.-+ .| +++=+.+--.+-+..+ -++|+ .|.+.+.+
T Consensus 265 ~-li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg----~Pvl~lR~~TERPE~v~agt~~lvg-~~~~~i~~ 333 (383)
T COG0381 265 K-LIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLG----KPVLVLRDTTERPEGVEAGTNILVG-TDEENILD 333 (383)
T ss_pred E-EeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcC----CcEEeeccCCCCccceecCceEEeC-ccHHHHHH
Confidence 4 456889999999999997766555 33456877763 33 4444544444444223 35555 57899999
Q ss_pred HHHHHhcCCH
Q 005855 520 AIARALNMSP 529 (673)
Q Consensus 520 aI~~aL~m~~ 529 (673)
++.++++++.
T Consensus 334 ~~~~ll~~~~ 343 (383)
T COG0381 334 AATELLEDEE 343 (383)
T ss_pred HHHHHhhChH
Confidence 9999998764
No 187
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=85.68 E-value=2.2 Score=44.13 Aligned_cols=71 Identities=7% Similarity=-0.045 Sum_probs=45.3
Q ss_pred chHHHHHHHhhccCeEEEEcccccccCCCC---CCCC-C-Cc---cc------------cccccCCChhHHHHHHHHhcC
Q 005855 578 READSIERYLRSNNRLLILGFNATLTEPVD---TPGR-R-GD---QI------------REMELKLHPDLKQPLNALCHD 637 (673)
Q Consensus 578 ~~~~~~~~y~~s~~rll~lDyDGTL~~~~~---~p~~-~-~~---~~------------~~~~~~p~~~~~~~L~~L~~d 637 (673)
.++++.++-.-.+...+.||.|||+....+ .+.. + .+ .+ ....+.|.+.++++|+.|-+.
T Consensus 50 ~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~ 129 (237)
T PRK11009 50 SVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKR 129 (237)
T ss_pred EHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHC
Confidence 455555555433455899999999995322 1100 0 00 00 012467788899999999764
Q ss_pred CCCeEEEEcCCC
Q 005855 638 PKTTIVVLSGSD 649 (673)
Q Consensus 638 ~~n~V~ViSGR~ 649 (673)
...+++||||+
T Consensus 130 -G~~I~iVTnR~ 140 (237)
T PRK11009 130 -GDSIYFITGRT 140 (237)
T ss_pred -CCeEEEEeCCC
Confidence 67999999996
No 188
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=85.38 E-value=84 Score=36.97 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe
Q 005855 454 CALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS 493 (673)
Q Consensus 454 ~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS 493 (673)
..++++||+++.+| |.+.+|++.++ .|.|+.
T Consensus 483 ~~~m~aaD~aLaaS-----GTaTLEaAL~g----~PmVV~ 513 (608)
T PRK01021 483 YELMRECDCALAKC-----GTIVLETALNQ----TPTIVT 513 (608)
T ss_pred HHHHHhcCeeeecC-----CHHHHHHHHhC----CCEEEE
Confidence 68999999999999 79999999995 666654
No 189
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=85.29 E-value=46 Score=39.77 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=87.6
Q ss_pred CCceEEEeecccccCChHHH-H---HHHHHHHHhCcCcc-CceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCC
Q 005855 362 GRKVMLGVDRLDMIKGIPQK-L---LAFEKFLEENSDWR-GKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTL 436 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~-L---~Af~~ll~~~P~~~-~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~ 436 (673)
+.-+++++-|+..-|-.... | .-+.+++ +.|+.. ..+++|..|....++. .-+++-+.|.+++..||..-...
T Consensus 443 ~slfdv~~rR~heYKRq~LniL~ii~~y~rik-~~p~~~~~Pv~~IFaGKAhP~d~-~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 443 DSLFDVQARRFHEYKRQLLNILHIIDRYNRIK-NNPNKKIRPVQFIFAGKAHPGDY-MGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp TSEEEEEES-SCCCCTHHHHHHHHHHHHHHHH-HSTTSCCS-EEEEEE----TT-H-HHHHHHHHHHHHHHHHCT-TTTC
T ss_pred chhhhhhhhhcccccccCcccccHHHHHHHHH-hcccCCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHHhcChhhc
Confidence 45577899999998977663 3 3445544 455432 2466665554433332 22456667777777777531111
Q ss_pred CcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCC--cCCChhHHHHHhhccCCCceEEEeCCCCchhhc----c-CceEEE
Q 005855 437 TAVPIHHLDRSLDFPALCALYAVTDVALVTSLR--DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL----G-AGAILV 509 (673)
Q Consensus 437 ~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~--EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l----g-~~gllV 509 (673)
+...|+|+. ..+-.--..++.+|||-+.+|++ |.-|..-+=||.- |++.+|..-|+.-++ | ++.+++
T Consensus 521 ~~lkVvFle-nYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~N-----GaL~lstlDG~niEi~e~vG~eN~fiF 594 (713)
T PF00343_consen 521 DRLKVVFLE-NYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMN-----GALNLSTLDGWNIEIAEAVGEENIFIF 594 (713)
T ss_dssp CGEEEEEET-T-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHT-----T-EEEEESSTCHHHHHHHH-GGGSEEE
T ss_pred cceeEEeec-CCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcC-----CCeEEecccchhHHHHHhcCCCcEEEc
Confidence 223578765 44556666789999999999984 9999998888875 889999999997665 5 567777
Q ss_pred CCCCHHHHHH
Q 005855 510 NPWNITEVAN 519 (673)
Q Consensus 510 nP~D~~~lA~ 519 (673)
- .+.+++.+
T Consensus 595 G-~~~~ev~~ 603 (713)
T PF00343_consen 595 G-LTAEEVEE 603 (713)
T ss_dssp S--BHHHHHH
T ss_pred C-CCHHHHHH
Confidence 4 45666544
No 190
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=84.63 E-value=0.78 Score=40.83 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=33.6
Q ss_pred EEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC---HHhHHHHhc
Q 005855 594 LILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD---RNVLDKVLD 658 (673)
Q Consensus 594 l~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~---~~~L~~~~~ 658 (673)
|+||.||||... ..|-|...++|+.|.+. .-.++++|..+ ++.+.+.+.
T Consensus 1 ~l~D~dGvl~~g---------------~~~ipga~e~l~~L~~~-g~~~~~lTNns~~s~~~~~~~L~ 52 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------NEPIPGAVEALDALRER-GKPVVFLTNNSSRSREEYAKKLK 52 (101)
T ss_dssp EEEESTTTSEET---------------TEE-TTHHHHHHHHHHT-TSEEEEEES-SSS-HHHHHHHHH
T ss_pred CEEeCccEeEeC---------------CCcCcCHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHH
Confidence 689999999852 23557889999999886 45677877654 445554443
No 191
>PRK14986 glycogen phosphorylase; Provisional
Probab=84.52 E-value=29 Score=41.98 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=100.4
Q ss_pred CCceEEEeecccccCChHH-HHHHHHHHH--HhCcCcc-CceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCC
Q 005855 362 GRKVMLGVDRLDMIKGIPQ-KLLAFEKFL--EENSDWR-GKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLT 437 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~-~L~Af~~ll--~~~P~~~-~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~ 437 (673)
+..+++++=|+..-|-... +|..++++. ..+|+.. ..+++|..|....++. .-+.+-+.|.+++.-||..=...+
T Consensus 542 ~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIk~I~~va~~in~Dp~v~~ 620 (815)
T PRK14986 542 KALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYY-MAKHIIHLINDVAKVINNDPQIGD 620 (815)
T ss_pred ccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhccChhhcC
Confidence 4567888999998888777 777766653 3456421 2466776665554443 334666777888887775211122
Q ss_pred cccEEEeCCCCCHHHHHHHHHHcCEEEEcCC--CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEEC
Q 005855 438 AVPIHHLDRSLDFPALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVN 510 (673)
Q Consensus 438 ~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl--~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVn 510 (673)
...|+|+.. .+-.--..++.+|||...+|. .|.=|..-+=||.- |++-+|..-|+..++ ++|++.+-
T Consensus 621 ~lkVVFlen-Y~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alN-----GaLtlgtlDG~nvEi~e~vG~eN~~~fG 694 (815)
T PRK14986 621 KLKVVFIPN-YSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALN-----GALTIGTLDGANVEMLEHVGEENIFIFG 694 (815)
T ss_pred ceeEEEeCC-CCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhc-----CceeeeccCCchhHHHHhcCCCcEEEeC
Confidence 335887653 344555678999999999997 47777777777764 889999999987665 36788885
Q ss_pred CCCHHHHHH
Q 005855 511 PWNITEVAN 519 (673)
Q Consensus 511 P~D~~~lA~ 519 (673)
. +.+++++
T Consensus 695 ~-~~~ev~~ 702 (815)
T PRK14986 695 N-TAEEVEA 702 (815)
T ss_pred C-CHHHHHH
Confidence 4 5666554
No 192
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=83.47 E-value=0.72 Score=45.70 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=31.5
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
..+.|++.+.|+.|.+. ..++|+|+.....++..+....
T Consensus 67 ~~~~pg~~e~L~~L~~~--~~~~IvS~~~~~~~~~~l~~~g 105 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER--FQVVILSDTFYEFAGPLMRQLG 105 (205)
T ss_pred CCCCCCHHHHHHHHHhc--CCEEEEeCCcHHHHHHHHHHcC
Confidence 45678899999999874 6899999999998888766543
No 193
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=83.07 E-value=51 Score=39.59 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=92.6
Q ss_pred CCceEEEeecccccCChHHHHHHHHHHHHhCc-CccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCccc
Q 005855 362 GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENS-DWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVP 440 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P-~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~p 440 (673)
+..+++++=|+..-|-....+.=..++...-- ++..+|.++..|....++. .-.++.+.+...+..||.+ ..
T Consensus 486 ~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~-~aK~iIk~I~~~a~~in~~------lk 558 (750)
T COG0058 486 NALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADY-AAKEIIKLINDVADVINNK------LK 558 (750)
T ss_pred CcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcch-HHHHHHHHHHHHHHhhccc------ce
Confidence 46688899999988877766665555544332 4555676665554443343 2346677788888888753 25
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCCC--cCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEECC
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSLR--DGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVNP 511 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl~--EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVnP 511 (673)
|+|+..+ +-.--..++.+|||-..+|++ |.=|..-+=||.- |++-+|..-|+--++ |.||+++-.
T Consensus 559 VvFl~nY-dvslA~~iipa~Dvweqis~a~~EASGTsnMK~alN-----GaltigtlDGanvEi~e~vg~~N~~~fG~ 630 (750)
T COG0058 559 VVFLPNY-DVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALN-----GALTLGTLDGANVEIYEHVGGENGWIFGE 630 (750)
T ss_pred EEEeCCC-ChhHHHhhcccccccccCCCCCccccCcCcchHHhc-----CCceeeccccHHHHHHHhcCCCceEEeCC
Confidence 7777543 334445678999999999874 6666665555553 889999999988665 478898854
No 194
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=58 Score=37.76 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=78.1
Q ss_pred EEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeC
Q 005855 366 MLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLD 445 (673)
Q Consensus 366 Il~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~ 445 (673)
++|..=-.+.|=.++.+.-.-++++.-|+- +|++.+++ +. .+..+.+++++++-+ . +...++| .
T Consensus 431 vVf~c~~n~~K~~pev~~~wmqIL~~vP~S----vl~L~~~~---~~---~~~~~~l~~la~~~G----v-~~eRL~f-~ 494 (620)
T COG3914 431 VVFCCFNNYFKITPEVFALWMQILSAVPNS----VLLLKAGG---DD---AEINARLRDLAEREG----V-DSERLRF-L 494 (620)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCc----EEEEecCC---Cc---HHHHHHHHHHHHHcC----C-Chhheee-c
Confidence 333333457788999999999999999974 36666643 12 245666777776633 2 3345665 5
Q ss_pred CCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC
Q 005855 446 RSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA 496 (673)
Q Consensus 446 ~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a 496 (673)
...+.++..+-|+.||+++-|=-|-| ..++.|++-. |++|++-.+
T Consensus 495 p~~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm-----~vPVlT~~G 539 (620)
T COG3914 495 PPAPNEDHRARYGIADLVLDTYPYGG-HTTASDALWM-----GVPVLTRVG 539 (620)
T ss_pred CCCCCHHHHHhhchhheeeecccCCC-ccchHHHHHh-----cCceeeecc
Confidence 67788899999999999999877766 5788999998 677777544
No 195
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=82.79 E-value=2.1 Score=49.28 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=39.6
Q ss_pred hccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 588 RSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 588 ~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
+.+.+++|||.||||..... +......+..-..+.+.+.+.|+.|.++ .-.++|+|..+.
T Consensus 165 ~~~~Kia~fD~DGTLi~t~s--g~~~~~~~~d~~~l~pgV~e~L~~L~~~-Gy~IvIvTNQ~g 224 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKS--GKVFPKGPDDWQIIFPEIPEKLKELEAD-GFKICIFTNQGG 224 (526)
T ss_pred CccCcEEEEECCCCccccCC--CccCCCCHHHeeecccCHHHHHHHHHHC-CCEEEEEECCcc
Confidence 34578999999999996421 1000001111223578999999999875 568899998655
No 196
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=82.27 E-value=2.3 Score=43.08 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=34.3
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
.+|||+|.||||.|....+ .|-..++.-|. |....|+..|..++.++...-
T Consensus 7 ~~lIFtDlD~TLl~~~ye~------------~pA~pv~~el~----d~G~~Vi~~SSKT~aE~~~l~ 57 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEW------------QPAAPVLLELK----DAGVPVILCSSKTRAEMLYLQ 57 (274)
T ss_pred ceEEEEcccCcccCCCCCC------------CccchHHHHHH----HcCCeEEEeccchHHHHHHHH
Confidence 4799999999999954333 23333433333 336789999999998665443
No 197
>PLN02954 phosphoserine phosphatase
Probab=82.25 E-value=1.3 Score=44.66 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
.+.+++.++|+.|.+. ...++|+||.....++..+...
T Consensus 84 ~l~pg~~e~l~~l~~~-g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 84 RLSPGIPELVKKLRAR-GTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCCccHHHHHHHHHHC-CCEEEEECCCcHHHHHHHHHHh
Confidence 4568999999999764 5689999999998888766653
No 198
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=82.21 E-value=2.9 Score=40.30 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=50.2
Q ss_pred hccCeEEEEcccccccCCCCCCCCCCcc-------------------c--cccccCCChhHHHHHHHHhcCCCCeEEEEc
Q 005855 588 RSNNRLLILGFNATLTEPVDTPGRRGDQ-------------------I--REMELKLHPDLKQPLNALCHDPKTTIVVLS 646 (673)
Q Consensus 588 ~s~~rll~lDyDGTL~~~~~~p~~~~~~-------------------~--~~~~~~p~~~~~~~L~~L~~d~~n~V~ViS 646 (673)
+.++..++||.|.||+.....|...... . .....++-|.+.+.|+.|+. .-.++|+|
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~--~yel~I~T 80 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK--LYEMHVYT 80 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh--hcEEEEEe
Confidence 3567779999999999866554311100 0 01224556899999999995 48999999
Q ss_pred CCCHHhHHHHhcccc
Q 005855 647 GSDRNVLDKVLDLVL 661 (673)
Q Consensus 647 GR~~~~L~~~~~~~~ 661 (673)
...+.-.+..+..+.
T Consensus 81 ~~~~~yA~~vl~~ld 95 (156)
T TIGR02250 81 MGTRAYAQAIAKLID 95 (156)
T ss_pred CCcHHHHHHHHHHhC
Confidence 999987777666554
No 199
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=80.32 E-value=2.6 Score=43.33 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=35.1
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
-++++||.||||... ..|.|.+.++|+.|.+. .-.++|+|+.++..
T Consensus 8 ~~~~~~D~dG~l~~~---------------~~~~pga~e~L~~L~~~-G~~~~ivTN~~~~~ 53 (242)
T TIGR01459 8 YDVFLLDLWGVIIDG---------------NHTYPGAVQNLNKIIAQ-GKPVYFVSNSPRNI 53 (242)
T ss_pred CCEEEEecccccccC---------------CccCccHHHHHHHHHHC-CCEEEEEeCCCCCh
Confidence 357999999999853 23568999999999874 45788887766643
No 200
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=79.41 E-value=2.3 Score=43.76 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=46.8
Q ss_pred cCeEEEEcccccccCCCCCCCC--CC----------ccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh---HH
Q 005855 590 NNRLLILGFNATLTEPVDTPGR--RG----------DQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV---LD 654 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~--~~----------~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~---L~ 654 (673)
++-+++||.|-|+....+.... ++ .-.....+++-+.++++++.|.+. ...|+++|||+... ..
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~-G~~Vf~lTGR~e~~r~~T~ 154 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIEL-GIKIFLLSGRWEELRNATL 154 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHH
Confidence 4677999999998864321100 00 001134678889999999999875 67899999999654 55
Q ss_pred HHhcc
Q 005855 655 KVLDL 659 (673)
Q Consensus 655 ~~~~~ 659 (673)
+++..
T Consensus 155 ~nL~~ 159 (229)
T TIGR01675 155 DNLIN 159 (229)
T ss_pred HHHHH
Confidence 55544
No 201
>PTZ00445 p36-lilke protein; Provisional
Probab=79.30 E-value=7.2 Score=39.57 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=47.3
Q ss_pred hHHHHHHHhhccCeEEEEcccccccCCC----CCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 579 EADSIERYLRSNNRLLILGFNATLTEPV----DTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 579 ~~~~~~~y~~s~~rll~lDyDGTL~~~~----~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
.+.+++.++...=+++++|||-||++.- .+|. +........++|+++..+++|.+. .-.|+|||=.+...
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~---~~~~~~~~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPD---NDDIRVLTSVTPDFKILGKRLKNS-NIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCC---cchhhhhccCCHHHHHHHHHHHHC-CCeEEEEEccchhh
Confidence 4455666777778999999999999821 1110 001112345688999998888753 67899998777655
No 202
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=79.28 E-value=1.6 Score=44.03 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=31.0
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
..+.+.+.+.|+.|.+. ...++|+||.....++.++...
T Consensus 69 ~~l~pg~~e~l~~l~~~-g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 69 AEIREGFREFVAFINEH-GIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred CcccccHHHHHHHHHHC-CCeEEEECCCcHHHHHHHHHhh
Confidence 45778888889888763 6789999999998888777654
No 203
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=78.83 E-value=2.3 Score=40.45 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=43.9
Q ss_pred EEEEcccccccCCCCCCCCCCc-----cccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc--ccee
Q 005855 593 LLILGFNATLTEPVDTPGRRGD-----QIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL--FIFF 665 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~-----~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~--~~~~ 665 (673)
+++||.||||+.....+....+ +........-|.+.+.|+.|+. .-.|+|.|..+..-.+.....+. +..|
T Consensus 2 ~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~--~~ev~i~T~~~~~ya~~v~~~ldp~~~~~ 79 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK--HYEVVIWTSASEEYAEPVLDALDPNGKLF 79 (159)
T ss_dssp EEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH--HCEEEEE-SS-HHHHHHHHHHHTTTTSSE
T ss_pred EEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH--hceEEEEEeehhhhhhHHHHhhhhhcccc
Confidence 6899999999976544321000 0011223445789999999976 48999999999876555554433 3444
Q ss_pred ecc
Q 005855 666 SGL 668 (673)
Q Consensus 666 ~~~ 668 (673)
++.
T Consensus 80 ~~~ 82 (159)
T PF03031_consen 80 SRR 82 (159)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 204
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=78.33 E-value=7.7 Score=38.09 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCEEEEeCccchhHHHHHHhhCCCCeEEeEe
Q 005855 210 QFAAYIKANQMFADVVNKHYK---DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFL 262 (673)
Q Consensus 210 ~w~~Y~~vN~~fA~~i~~~~~---~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~fl 262 (673)
.|+.=...-+..|+.+.++-+ .+|+|..| +-+.-+-+||+..|++++..++
T Consensus 42 ~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H--~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 42 DFEAAVLRGQAVARAARQLRAQGFVPDVIIAH--PGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEc--CCcchhhhHHHhCCCCcEEEEE
Confidence 355544455555565555544 35999999 7888888899999999877543
No 205
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=77.07 E-value=5.7 Score=41.83 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=32.8
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++.+.+.+.|+.|.+. ...++|+|+.....++..+....
T Consensus 141 ~~l~pg~~e~L~~L~~~-gi~laIvSn~~~~~~~~~L~~~g 180 (273)
T PRK13225 141 LQLFPGVADLLAQLRSR-SLCLGILSSNSRQNIEAFLQRQG 180 (273)
T ss_pred CCcCCCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHcC
Confidence 35678999999999764 56899999999998888876654
No 206
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=76.38 E-value=6.5 Score=38.69 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=46.6
Q ss_pred CeEEEEcccccccCCCC-----CCCCCCcccc-------ccccCCChhHHHHHHHHhcCCCCeEEEEcCC-CHHhHHHHh
Q 005855 591 NRLLILGFNATLTEPVD-----TPGRRGDQIR-------EMELKLHPDLKQPLNALCHDPKTTIVVLSGS-DRNVLDKVL 657 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~-----~p~~~~~~~~-------~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR-~~~~L~~~~ 657 (673)
.||+.||.|+||....- -|-+...+.. .....+.+++.++|+.|.+. .-.++|+|+. ....++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~-G~~l~I~Sn~~~~~~~~~~L 80 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDA-GTYLATASWNDVPEWAYEIL 80 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHC-CCEEEEEeCCCChHHHHHHH
Confidence 37999999999986431 1111111111 13457789999999999863 5689999988 777666655
Q ss_pred cccc
Q 005855 658 DLVL 661 (673)
Q Consensus 658 ~~~~ 661 (673)
....
T Consensus 81 ~~~~ 84 (174)
T TIGR01685 81 GTFE 84 (174)
T ss_pred HhCC
Confidence 5433
No 207
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=75.60 E-value=3.9 Score=42.19 Aligned_cols=41 Identities=15% Similarity=0.372 Sum_probs=35.0
Q ss_pred cCCChhHHHHHHHHhcCC-CCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDP-KTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~-~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++.+.++++++.|++.. ...++|+|--.--.++.|+....
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~g 111 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHG 111 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCC
Confidence 467899999999997643 67899999999999999997755
No 208
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=75.47 E-value=5.2 Score=39.13 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=39.8
Q ss_pred CeEEEEcccccccCC---CCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 591 NRLLILGFNATLTEP---VDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 591 ~rll~lDyDGTL~~~---~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
=++++||+||+|++- ....| ..++ .-+-.=...++.|.+. .-.++|+|+.+...++..+.....
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g---~~~~----~~~~~D~~~~~~L~~~-Gi~laIiT~k~~~~~~~~l~~lgi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEG---IESR----NFDIKDGMGVIVLQLC-GIDVAIITSKKSGAVRHRAEELKI 73 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCC---cEEE----EEecchHHHHHHHHHC-CCEEEEEECCCcHHHHHHHHHCCC
Confidence 378999999999975 22221 1111 1111222334444442 468999999999988888877653
No 209
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=74.18 E-value=4.9 Score=39.68 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=27.7
Q ss_pred ccCCChhHHHHHHHHhcCCCCeEEEEcCCCH-----------HhHHHHhcccc
Q 005855 620 ELKLHPDLKQPLNALCHDPKTTIVVLSGSDR-----------NVLDKVLDLVL 661 (673)
Q Consensus 620 ~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~-----------~~L~~~~~~~~ 661 (673)
..+|-+++.++|++|.+. ...+++||+|.. +-|+++|+.++
T Consensus 71 ~l~p~~gA~e~l~~L~~~-g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~ 122 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDK-GHEIVIITARPPEFPDHSAEEKREWLERHFPFIP 122 (191)
T ss_dssp T--B-TTHHHHHHHHHTS-TTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHH
T ss_pred CCCccHHHHHHHHHHHHc-CCcEEEEEecCccccchHHHHHHHHHHHHcCCCc
Confidence 357889999999999975 346777777754 35778877765
No 210
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=73.76 E-value=8.4 Score=40.59 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=42.2
Q ss_pred cCeEEEEcccccccCCCCCCCC--CC------ccc-----cccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 590 NNRLLILGFNATLTEPVDTPGR--RG------DQI-----REMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~~~~p~~--~~------~~~-----~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
.+-+++||.|+|+....+.... .+ ... ....+++-+.++++++.|-+. ...|++||||+-..
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~-G~kIf~VSgR~e~~ 174 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSL-GFKIIFLSGRLKDK 174 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHC-CCEEEEEeCCchhH
Confidence 4578999999998853221110 00 001 123678889999999999875 67899999999643
No 211
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=73.12 E-value=4.8 Score=38.84 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++.+++.+.|+.|.+. .-.++|+|+.....++.++...+
T Consensus 71 ~~l~~g~~~ll~~l~~~-g~~~~i~S~~~~~~~~~~l~~~~ 110 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEH-GIDFIVISDGNDFFIDPVLEGIG 110 (188)
T ss_pred CCCCccHHHHHHHHHHc-CCcEEEEeCCcHHHHHHHHHHcC
Confidence 35677788888888653 46899999999988888776644
No 212
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=72.92 E-value=7.7 Score=41.75 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=47.5
Q ss_pred CeEEEEcccccccCCCC-CCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 591 NRLLILGFNATLTEPVD-TPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~-~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++|++|+|+||..-+- ..|..+- ....+.+++.+.|+.|.+. ...++|+|..+.....+.|...|
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~g~~~i----~~~~~~~~~~e~L~~L~~~-Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGEDGIDNL----NLSPLHKTLQEKIKTLKKQ-GFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred eEEEEEcCCCCCCCCEEccCCcccc----ccCccHHHHHHHHHHHHhC-CCEEEEEcCCCHHHHHHHHHhCc
Confidence 47899999999997641 1110000 1224578999999999763 56889999999999988887744
No 213
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=72.39 E-value=6.9 Score=42.19 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=34.2
Q ss_pred EEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcC----CCCeEEEE--cCCCHHhHHH
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHD----PKTTIVVL--SGSDRNVLDK 655 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d----~~n~V~Vi--SGR~~~~L~~ 655 (673)
.|+||.||||... ..+.+...++|+.|... ....+++. ||++.....+
T Consensus 2 ~~ifD~DGvL~~g---------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~ 55 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAE 55 (321)
T ss_pred EEEEeCcCceECC---------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHH
Confidence 4899999999853 22467889999999875 55555555 6777665433
No 214
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=72.26 E-value=4.5 Score=41.47 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.6
Q ss_pred EEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEc---CCCHHhHHHHhcc
Q 005855 594 LILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLS---GSDRNVLDKVLDL 659 (673)
Q Consensus 594 l~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViS---GR~~~~L~~~~~~ 659 (673)
++||.||||.... .+.+...+.|+.|-+. .-+++++| ||+..++.+.+..
T Consensus 1 ~lfD~DGvL~~~~---------------~~~~~a~e~i~~l~~~-g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGH---------------KPIPGAAEALNRLRAK-GKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCC---------------ccCcCHHHHHHHHHHC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999998642 2345888899888765 35677776 8999877666655
No 215
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=71.97 E-value=3.6 Score=43.33 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=42.1
Q ss_pred ccCeEEEEcccccccCCCCCCC-----CCC---ccc----cccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHH
Q 005855 589 SNNRLLILGFNATLTEPVDTPG-----RRG---DQI----REMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRN 651 (673)
Q Consensus 589 s~~rll~lDyDGTL~~~~~~p~-----~~~---~~~----~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~ 651 (673)
.++..++||.|+|+....+..+ ... ... ....+.|-+.+.+.|+.|.+. ...|+|+|+|+..
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~-G~~v~iVTnR~~~ 146 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSK-GVKIFYVSNRSEK 146 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 4567899999999986442110 000 001 113467789999999999775 5689999999854
No 216
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=70.88 E-value=1.3e+02 Score=36.70 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=99.6
Q ss_pred CCceEEEeecccccCChHH-HHHHHHHHH--HhCcCcc-CceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCC
Q 005855 362 GRKVMLGVDRLDMIKGIPQ-KLLAFEKFL--EENSDWR-GKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLT 437 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~-~L~Af~~ll--~~~P~~~-~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~ 437 (673)
+..+++++=|+..-|-... +|.-+.++. ..+|+.. ..+++|..|....++. .-+.+-+.|..++..||..=...+
T Consensus 529 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 529 DSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHhccChhcCC
Confidence 5667889999999888777 666655543 3455421 2366766665554443 334667778888888875322223
Q ss_pred cccEEEeCCCCCHHHHHHHHHHcCEEEEcCC--CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc----c-CceEEEC
Q 005855 438 AVPIHHLDRSLDFPALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL----G-AGAILVN 510 (673)
Q Consensus 438 ~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl--~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l----g-~~gllVn 510 (673)
...|+|+.. .+-.--..++.+|||-...|+ .|.=|..-+=||.- |++.+|..-|+..++ | +|++++-
T Consensus 608 ~lkVVFlen-Y~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lN-----GaltlgtlDGanvEi~e~vG~eN~fiFG 681 (797)
T cd04300 608 KLKVVFLPN-YNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLN-----GALTIGTLDGANVEIAEEVGEENIFIFG 681 (797)
T ss_pred ceEEEEeCC-CChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhc-----CceeeecccchhHHHHHHhCcCcEEEeC
Confidence 345887753 344445578999999999887 47777777777764 889999988988666 4 5788885
Q ss_pred CCCHHHHHH
Q 005855 511 PWNITEVAN 519 (673)
Q Consensus 511 P~D~~~lA~ 519 (673)
. +.+++.+
T Consensus 682 ~-~~~ev~~ 689 (797)
T cd04300 682 L-TAEEVEA 689 (797)
T ss_pred C-CHHHHHH
Confidence 3 5666554
No 217
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=70.83 E-value=69 Score=38.82 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=98.2
Q ss_pred CCceEEEeecccccCChHH-HHHHHHHHH--HhCcCcc-CceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCC
Q 005855 362 GRKVMLGVDRLDMIKGIPQ-KLLAFEKFL--EENSDWR-GKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLT 437 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~-~L~Af~~ll--~~~P~~~-~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~ 437 (673)
+..+++++=|+..-|-... +|..+.++. ..+|+.. ..+++|..|....++. .-+.+-+.|..++..||..=...+
T Consensus 528 ~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp~v~~ 606 (798)
T PRK14985 528 QAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAEVINNDPLVGD 606 (798)
T ss_pred hhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhcCChhhCC
Confidence 4456778999998887777 666655553 3456522 2366776665544442 334566778888888874311122
Q ss_pred cccEEEeCCCCCHHHHHHHHHHcCEEEEcCC--CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEEC
Q 005855 438 AVPIHHLDRSLDFPALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVN 510 (673)
Q Consensus 438 ~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl--~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVn 510 (673)
...|+|+. ..+-.--..++.+|||...+|+ .|.=|..-+=||.- |++-+|..-|+.-++ ++|++++-
T Consensus 607 ~lkVVFle-nY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amN-----GaLtlgtlDGanvEi~e~vG~eN~f~fG 680 (798)
T PRK14985 607 KLKVVFLP-DYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALN-----GALTVGTLDGANVEIAEQVGEENIFIFG 680 (798)
T ss_pred ceeEEEeC-CCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhc-----CceeeecccchHHHHHHHhCcCcEEEeC
Confidence 33578765 3344555678999999999887 47777777777664 889999999986555 36888886
Q ss_pred CCCHHHHHH
Q 005855 511 PWNITEVAN 519 (673)
Q Consensus 511 P~D~~~lA~ 519 (673)
. +.+++.+
T Consensus 681 ~-~~~ev~~ 688 (798)
T PRK14985 681 H-TVEQVKA 688 (798)
T ss_pred C-CHHHHHH
Confidence 4 4555543
No 218
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=70.75 E-value=4.3 Score=45.06 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-------cCceEEE-C-----C-CCHHHH
Q 005855 452 ALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-------GAGAILV-N-----P-WNITEV 517 (673)
Q Consensus 452 el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-------g~~gllV-n-----P-~D~~~l 517 (673)
++-.+-+.|.+.|+||+||+.|.++.|....| .|-|.+..+|....+ ..-||.| + | .+++++
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMG----iPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL 568 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG----IPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQL 568 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEec----cccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHH
Confidence 44567889999999999999999999988874 777877877766544 1235544 2 2 356777
Q ss_pred HHHHHHHhc
Q 005855 518 ANAIARALN 526 (673)
Q Consensus 518 A~aI~~aL~ 526 (673)
++-|.....
T Consensus 569 ~~~m~~F~~ 577 (692)
T KOG3742|consen 569 ASFMYEFCK 577 (692)
T ss_pred HHHHHHHHH
Confidence 877777765
No 219
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=69.20 E-value=9.9 Score=36.71 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=46.3
Q ss_pred eEEEEcccccccCCCCCCCC-CCcc---cc------ccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 592 RLLILGFNATLTEPVDTPGR-RGDQ---IR------EMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~-~~~~---~~------~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
..++||.|+||+.....|.. ..+. ++ ..-...-|.+.+.|+.|++. -.|+|.|.-+..-.+..+..+.
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~--yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW--YELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc--CEEEEEcCCcHHHHHHHHHHHC
Confidence 56899999999987555432 1110 00 11234457999999999874 7899999998887766666543
No 220
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=67.20 E-value=12 Score=37.54 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=42.1
Q ss_pred ccCeEEEEcccccccCCCC-CCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 589 SNNRLLILGFNATLTEPVD-TPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 589 s~~rll~lDyDGTL~~~~~-~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
..+.+++||.|+||+.... .+. .....-|.+.+.|+.+++ .-.|+|-|..+..-.+..+
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~--------~~~~kRP~l~eFL~~~~~--~feIvVwTAa~~~ya~~~l 78 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAET--------GEELMRPYLHEFLTSAYE--DYDIVIWSATSMKWIEIKM 78 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCC--------ceEEeCCCHHHHHHHHHh--CCEEEEEecCCHHHHHHHH
Confidence 4568999999999997521 110 112234689999999998 6889999999876555444
No 221
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=67.02 E-value=8.8 Score=39.10 Aligned_cols=41 Identities=7% Similarity=0.224 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
+..|.+.++++.+++.+.-.+.|||--.-=++++|+.....
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 56899999999999998889999999999999999987653
No 222
>PRK11590 hypothetical protein; Provisional
Probab=64.25 E-value=3.6 Score=41.34 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCChhHHHHH-HHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 622 KLHPDLKQPL-NALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 622 ~p~~~~~~~L-~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.+.|.+.+.| +.|.+ ....|+|+|+.....++.++....
T Consensus 95 ~~~pga~e~L~~~l~~-~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 95 TAFPVVQERLTTYLLS-SDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred cCCccHHHHHHHHHHh-CCCEEEEEeCCcHHHHHHHHHHcc
Confidence 4568889999 45654 256999999999998887765433
No 223
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=64.00 E-value=11 Score=39.69 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=35.9
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcC---CCHHhHHHHhcc
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSG---SDRNVLDKVLDL 659 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSG---R~~~~L~~~~~~ 659 (673)
..|+||.||||.. ...+-|+..+.|+.|.+. +-+|+++|. |+++.+.+.+..
T Consensus 9 ~~~l~DlDGvl~~---------------G~~~ipga~e~l~~L~~~-g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 9 DGFLFDLDGVLYR---------------GNEAIPGAAEALKRLKAA-GKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred CEEEEcCcCceEe---------------CCccCchHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHh
Confidence 4599999999984 234557999999999986 346666664 444544444433
No 224
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=63.88 E-value=35 Score=32.45 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH
Q 005855 380 QKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV 459 (673)
Q Consensus 380 ~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ 459 (673)
.-+.++..+.+++ ++..|+||-|-.-++.++. ..+.+++.+.++..+|+ .||++.....+-.+-...+..
T Consensus 40 ~~~~~l~~li~~~-----~~~~vVVGlP~~m~g~~~~-~~~~~~~f~~~L~~r~~----lpv~l~DERltTv~A~~~L~~ 109 (141)
T COG0816 40 QDFNALLKLVKEY-----QVDTVVVGLPLNMDGTEGP-RAELARKFAERLKKRFN----LPVVLWDERLSTVEAERMLIE 109 (141)
T ss_pred hhHHHHHHHHHHh-----CCCEEEEecCcCCCCCcch-hHHHHHHHHHHHHHhcC----CCEEEEcCccCHHHHHHHHHH
Confidence 3456666666665 4668889999877766654 66778999999998886 489988877776666666555
Q ss_pred cCE
Q 005855 460 TDV 462 (673)
Q Consensus 460 ADv 462 (673)
+++
T Consensus 110 ~~~ 112 (141)
T COG0816 110 AGV 112 (141)
T ss_pred cCC
Confidence 443
No 225
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=62.29 E-value=12 Score=36.75 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=35.1
Q ss_pred CeEEEEcccccccCCCCCCC-----CCCcc------ccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC-HHhHHHHhc
Q 005855 591 NRLLILGFNATLTEPVDTPG-----RRGDQ------IREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD-RNVLDKVLD 658 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~-----~~~~~------~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~-~~~L~~~~~ 658 (673)
.+|++||.|+||.|..-+-- +.... .........+++..+|+.|.. ....++|.|=-+ -+..++.++
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKE-RGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHH
Confidence 47899999999998642211 00000 112445778999999999998 467788888433 344444443
No 226
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=61.78 E-value=23 Score=34.64 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCCEEEEeCc-cchhHHHHHHhhCCCC-eEEeEeccC--CCchhh-hhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHH
Q 005855 231 DGDVVWCHDY-HLMFLPKCLKEYNSDM-KVGWFLHTP--FPSSEI-HRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSA 305 (673)
Q Consensus 231 ~~DvVwvHDy-hl~llp~~Lr~~~~~~-~Ig~flH~P--fP~~e~-fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~ 305 (673)
..|+|.+-|. .|.-+-.+.+ ....+ +|.+|+=.- +|-++- -|.+-..---+-+.|.||.|.|.+.-..+.|+..
T Consensus 59 ~~dll~aTsmldLa~l~gL~p-~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~ 137 (168)
T PF12038_consen 59 SYDLLFATSMLDLATLRGLRP-DLANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDG 137 (168)
T ss_pred CCCEEEeeccccHHHHHhhcc-CCCCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHH
Confidence 4589988763 2322322222 22344 455554333 332221 1111111122456789999999999999999999
Q ss_pred HHHHhc
Q 005855 306 CTRILG 311 (673)
Q Consensus 306 ~~r~l~ 311 (673)
+..++.
T Consensus 138 ~~~fL~ 143 (168)
T PF12038_consen 138 IPSFLK 143 (168)
T ss_pred HHHHHH
Confidence 998885
No 227
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=61.38 E-value=4.5 Score=40.44 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.6
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
.++.+.+.+.|+.|-+. ...++|+||.....++.+....
T Consensus 84 ~~~~~g~~~~l~~l~~~-g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEK-GYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred CCcCCCHHHHHHHHHHC-CCEEEEECCCcHHHHHHHHHHc
Confidence 35788999999999764 5789999999887776666543
No 228
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=60.19 E-value=1.6 Score=44.77 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=41.1
Q ss_pred ccCeEEEEcccccccCCCCC------------CCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 589 SNNRLLILGFNATLTEPVDT------------PGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 589 s~~rll~lDyDGTL~~~~~~------------p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
.++..++||.|+|+....+. +.....-.....+++-|.++++++.+.+. ...|++||||+...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~-G~~V~~iT~R~~~~ 144 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSR-GVKVFFITGRPESQ 144 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHT-TEEEEEEEEEETTC
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHC-CCeEEEEecCCchh
Confidence 45678999999998642111 10000001123346677899999998875 68999999999864
No 229
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=59.01 E-value=1.7e+02 Score=35.59 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=99.1
Q ss_pred CCceEEEeecccccCChHH-HHHHHHHHH--HhCcCcc-CceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCC
Q 005855 362 GRKVMLGVDRLDMIKGIPQ-KLLAFEKFL--EENSDWR-GKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLT 437 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~-~L~Af~~ll--~~~P~~~-~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~ 437 (673)
+..+++.+=|+..-|-... +|..++++. ...|+.. ..+++|..|....++. .-+.+-+.|..++..||..=...+
T Consensus 526 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~iN~Dp~v~~ 604 (794)
T TIGR02093 526 NSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVAEVVNNDPAVGD 604 (794)
T ss_pred cccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHHHHhccChhhCC
Confidence 4567788999998887777 666655543 3455431 1356766665554443 334666778888888875311223
Q ss_pred cccEEEeCCCCCHHHHHHHHHHcCEEEEcCC--CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc----c-CceEEEC
Q 005855 438 AVPIHHLDRSLDFPALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL----G-AGAILVN 510 (673)
Q Consensus 438 ~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl--~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l----g-~~gllVn 510 (673)
...|+|+.. .+-.--..++.+|||-...|+ .|.=|..-+=||.- |++-+|..-|+..++ | +|++++-
T Consensus 605 ~lkVVFlen-Y~VslAe~iipaaDvseqistag~EASGTsnMK~alN-----GaltlgtlDGanvEi~e~vG~eN~fiFG 678 (794)
T TIGR02093 605 KLKVVFVPN-YNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLN-----GALTIGTLDGANVEIREEVGAENIFIFG 678 (794)
T ss_pred ceeEEEeCC-CChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhc-----CcceeecccchhHHHHHHhCcccEEEcC
Confidence 335887753 344455578999999999887 47777777777764 889999988887666 3 5777774
Q ss_pred CCCHHHHHHH
Q 005855 511 PWNITEVANA 520 (673)
Q Consensus 511 P~D~~~lA~a 520 (673)
.+.+++++.
T Consensus 679 -~~~~ev~~~ 687 (794)
T TIGR02093 679 -LTVEEVEAL 687 (794)
T ss_pred -CCHHHHHHH
Confidence 456665543
No 230
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=58.60 E-value=86 Score=32.94 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc------cC--ceEEECCC--CHHHH
Q 005855 448 LDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL------GA--GAILVNPW--NITEV 517 (673)
Q Consensus 448 v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l------g~--~gllVnP~--D~~~l 517 (673)
.+..++..++..||++|-.+ |+| +..|+++++ .|.|+=...|..|+. .. -|..+++. +++.+
T Consensus 239 ~~~~~~~~~m~~ad~vIs~~---G~~-t~~Ea~~~g----~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l 310 (318)
T PF13528_consen 239 FSTPDFAELMAAADLVISKG---GYT-TISEALALG----KPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERL 310 (318)
T ss_pred cChHHHHHHHHhCCEEEECC---CHH-HHHHHHHcC----CCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHH
Confidence 34578999999999999775 443 378999995 666666666666654 12 24444443 56888
Q ss_pred HHHHHH
Q 005855 518 ANAIAR 523 (673)
Q Consensus 518 A~aI~~ 523 (673)
+++|.+
T Consensus 311 ~~~l~~ 316 (318)
T PF13528_consen 311 AEFLER 316 (318)
T ss_pred HHHHhc
Confidence 887764
No 231
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=58.04 E-value=31 Score=36.80 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc------c--CceEEECCCCHHHHHHHHH
Q 005855 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL------G--AGAILVNPWNITEVANAIA 522 (673)
Q Consensus 451 ~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l------g--~~gllVnP~D~~~lA~aI~ 522 (673)
+++.++|..||++|..+ |++ ++.|+++++ .|+|+....|-.++. . ..|+.++..+. ++.+++.
T Consensus 239 ~~~~~~l~~ad~vI~~~---G~~-t~~Ea~~~g----~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~ 309 (321)
T TIGR00661 239 DNFKELIKNAELVITHG---GFS-LISEALSLG----KPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAIL 309 (321)
T ss_pred HHHHHHHHhCCEEEECC---ChH-HHHHHHHcC----CCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHH
Confidence 78999999999999877 444 589999995 777777776644442 1 23667776666 4455555
Q ss_pred HHhcCC
Q 005855 523 RALNMS 528 (673)
Q Consensus 523 ~aL~m~ 528 (673)
..++++
T Consensus 310 ~~~~~~ 315 (321)
T TIGR00661 310 DIRNMK 315 (321)
T ss_pred hccccc
Confidence 555443
No 232
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=53.13 E-value=23 Score=34.26 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=41.0
Q ss_pred EEEEcccccccCCCCCCCCCCccccc-cccCCChhHHHHHHHHhcCCCCeEEEEcCCCHH---hHHHHhccc
Q 005855 593 LLILGFNATLTEPVDTPGRRGDQIRE-MELKLHPDLKQPLNALCHDPKTTIVVLSGSDRN---VLDKVLDLV 660 (673)
Q Consensus 593 ll~lDyDGTL~~~~~~p~~~~~~~~~-~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~---~L~~~~~~~ 660 (673)
+++.|.||||+...- +++-.+- .....++.+.++.+++.+. .-.+.=+|+|... ..++|+..+
T Consensus 1 VVvsDIDGTiT~SD~----~G~i~~~~G~d~~h~g~~~l~~~i~~~-GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV----LGHILPILGKDWTHPGAAELYRKIADN-GYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred CEEEeccCCcCccch----hhhhhhccCchhhhhcHHHHHHHHHHC-CeEEEEECcCcHHHHHHHHHHHHHH
Confidence 478999999997521 1111110 1226788999999999985 3467778999963 445555543
No 233
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=51.90 E-value=54 Score=38.00 Aligned_cols=82 Identities=20% Similarity=0.035 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHcCEEEE-cCCCcCCChhHHHHHhhcc--------------------CCCc-eEEEeCCCCchhhc
Q 005855 445 DRSLDFPALCALYAVTDVALV-TSLRDGMNLVSYEFVACQD--------------------LKKG-VLILSEFAGAAQSL 502 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv-~Sl~EGf~Lv~lEamA~~~--------------------~~~g-~lVlSe~aG~~~~l 502 (673)
.|.++.+|+..+++.|-|||= -.-+| |=.++||+|.|. +++. -=+.|....+...+
T Consensus 327 HG~l~~~ef~~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~i 404 (559)
T PF15024_consen 327 HGILSGDEFQQLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFI 404 (559)
T ss_pred cCcCCHHHHHHHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhC
Confidence 578899999999999999993 34467 457999999870 0000 12344444333345
Q ss_pred c-CceEEECCCCHHHHHHHHHHHhcCC
Q 005855 503 G-AGAILVNPWNITEVANAIARALNMS 528 (673)
Q Consensus 503 g-~~gllVnP~D~~~lA~aI~~aL~m~ 528 (673)
| ..-+.|+-.|.+++-+||.++|+++
T Consensus 405 G~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 405 GEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 5 4678999999999999999999865
No 234
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=51.07 E-value=8 Score=37.29 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=25.0
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
..+.+++.++|+.|.+. .-.++|+|+. ..++..+
T Consensus 87 ~~~~~g~~~~l~~l~~~-g~~i~i~S~~--~~~~~~l 120 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKK-GIAVGLGSSS--KNADRIL 120 (185)
T ss_pred CCCCcCHHHHHHHHHHc-CCeEEEEeCc--hhHHHHH
Confidence 35788899999999775 5688999987 3344433
No 235
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=50.49 E-value=3e+02 Score=29.74 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred CCceEEEeecccccCChHH-HHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCccc
Q 005855 362 GRKVMLGVDRLDMIKGIPQ-KLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVP 440 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~~-~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~p 440 (673)
++.+++..|--.+.|..+. ...++.+.+.+. . ..++++|+|.. .+. ...+++++.++. .+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~-~----~~vvl~ggp~e---~e~----~~~~~i~~~~~~-------~~ 243 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQAR-G----YEVVLTSGPDK---DDL----ACVNEIAQGCQT-------PP 243 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHC-C----CeEEEEcCCCh---HHH----HHHHHHHHhcCC-------Cc
Confidence 4556667776567777652 333333333332 2 23455665531 111 122333322211 13
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcC
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTS 467 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~S 467 (673)
++-+.|..+-.|+.++++.||++|-+-
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~nD 270 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGVD 270 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecC
Confidence 444678889999999999999999764
No 236
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=50.29 E-value=2.7e+02 Score=30.35 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCc---hhhc------c-C-ceEEECC--CCHHHH
Q 005855 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGA---AQSL------G-A-GAILVNP--WNITEV 517 (673)
Q Consensus 451 ~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~---~~~l------g-~-~gllVnP--~D~~~l 517 (673)
+++..+|+.||++|.-+- +.+..|+++++ .|.|+--+... .++. . . .|..+.. .+++.+
T Consensus 244 ~~m~~~~~~adlvIsr~G----~~t~~E~~~~g----~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l 315 (352)
T PRK12446 244 GELPDILAITDFVISRAG----SNAIFEFLTLQ----KPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSL 315 (352)
T ss_pred hhHHHHHHhCCEEEECCC----hhHHHHHHHcC----CCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHH
Confidence 578899999999886532 57889999995 66666644321 1232 1 2 2444433 357899
Q ss_pred HHHHHHHhcCC
Q 005855 518 ANAIARALNMS 528 (673)
Q Consensus 518 A~aI~~aL~m~ 528 (673)
+++|..+++++
T Consensus 316 ~~~l~~ll~~~ 326 (352)
T PRK12446 316 IKHVEELSHNN 326 (352)
T ss_pred HHHHHHHHcCH
Confidence 99999998754
No 237
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=50.10 E-value=8.8 Score=37.47 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||+.
T Consensus 5 k~viFD~DGTLid 17 (201)
T TIGR01491 5 KLIIFDLDGTLTD 17 (201)
T ss_pred eEEEEeCCCCCcC
No 238
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=49.15 E-value=23 Score=35.06 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=36.9
Q ss_pred CeEEEEcccccccCCCCCCCCCCccccc-cccCCChhHHHHHHHHhcCCCCeEEEEcCC
Q 005855 591 NRLLILGFNATLTEPVDTPGRRGDQIRE-MELKLHPDLKQPLNALCHDPKTTIVVLSGS 648 (673)
Q Consensus 591 ~rll~lDyDGTL~~~~~~p~~~~~~~~~-~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR 648 (673)
..++|||=||||.-..++ +++. .+-...+.++.+|..|.+. .-.++|+|..
T Consensus 5 ~k~lflDRDGtin~d~~~------yv~~~~~~~~~~g~i~al~~l~~~-gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKGD------YVDSLDDFQFIPGVIPALLKLQRA-GYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCCc------ccCcHHHhccCccHHHHHHHHHhC-CCeEEEEECC
Confidence 578999999999864331 2221 3456678999999999854 6788898873
No 239
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=48.82 E-value=30 Score=31.48 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHhcCCCCEEEEeCccc-hhHHHHHHhhCCCCeEEeEecc
Q 005855 224 VVNKHYKDGDVVWCHDYHL-MFLPKCLKEYNSDMKVGWFLHT 264 (673)
Q Consensus 224 ~i~~~~~~~DvVwvHDyhl-~llp~~Lr~~~~~~~Ig~flH~ 264 (673)
++.+..+ .|+||+|.... .+++.++++.....++.+..|.
T Consensus 68 k~ik~~~-~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 68 KIIKKEK-PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHhccCC-CCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 3344344 69999999875 5666667666555889898884
No 240
>PF14682 SPOB_ab: Sporulation initiation phospho-transferase B, C-terminal; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.66 E-value=18 Score=33.24 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhccccCCCCcchHHHHHHHhhc-cCeEEEEcccccccCCCCCCCCCCccccccccCCChh
Q 005855 548 AQEWAETFVSELNDTVVEAQLRIKQVPPSLREADSIERYLRS-NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPD 626 (673)
Q Consensus 548 ~~~W~~~fl~~L~~~~~~~~~~~~~~~~~L~~~~~~~~y~~s-~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~ 626 (673)
...|.++|++.|+...+...-.-..+. +.. .+. ++..|+|||-|+|... .+
T Consensus 38 L~~w~~~ff~~l~~~v~~~~eNhl~vs--iq~-------~~~d~~~~~fFDf~G~l~~~-------------------~~ 89 (115)
T PF14682_consen 38 LTTWMRTFFSLLEEHVDPEGENHLSVS--IQT-------DHPDNGVRFFFDFSGILTDL-------------------EA 89 (115)
T ss_dssp HHHHHHHHHHHHHHHB-SSS-EEEEEE--EES---------SSSSEEEEEEEES-BS-G-------------------GG
T ss_pred HHHHHHHHHHHHHHhcCcccCCeEEEE--EEE-------ecCCCcEEEEEEccEEEcCH-------------------HH
Confidence 468999999999988765321111110 000 111 4577999999999953 36
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCC
Q 005855 627 LKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 627 ~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
+.+.++..+.+-+-..+.+|+..
T Consensus 90 l~~~~~~~~~~~~v~~~~~~e~E 112 (115)
T PF14682_consen 90 LQQFRESQQSDVRVDSFELTEHE 112 (115)
T ss_dssp HHHHHHH-BTTBEEEEEEE-SSE
T ss_pred HHHHHhccCCCcEEEEEEeecce
Confidence 66644444443233456776654
No 241
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=48.60 E-value=7.4 Score=37.23 Aligned_cols=11 Identities=55% Similarity=0.836 Sum_probs=0.0
Q ss_pred EEEEccccccc
Q 005855 593 LLILGFNATLT 603 (673)
Q Consensus 593 ll~lDyDGTL~ 603 (673)
|++||+||||+
T Consensus 1 l~~fD~DgTl~ 11 (177)
T TIGR01488 1 LAIFDFDGTLT 11 (177)
T ss_pred CEEecCccccc
No 242
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=48.51 E-value=9.9 Score=36.83 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 628 KQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 628 ~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.+.|..|.+ +..++|+||.+.+.++..+....
T Consensus 93 ~e~L~~L~~--~~~l~I~T~~~~~~~~~~l~~~~ 124 (188)
T PRK10725 93 IEVVKAWHG--RRPMAVGTGSESAIAEALLAHLG 124 (188)
T ss_pred HHHHHHHHh--CCCEEEEcCCchHHHHHHHHhCC
Confidence 467777754 35789999999988888777655
No 243
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=47.86 E-value=2.8e+02 Score=27.21 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=50.2
Q ss_pred CHHHHHHHHH--HcCEEEEcCCCcC----CChhHHHHHhhccCCCceEEEeCCCCchh---hc--cCceEEECCCCHHHH
Q 005855 449 DFPALCALYA--VTDVALVTSLRDG----MNLVSYEFVACQDLKKGVLILSEFAGAAQ---SL--GAGAILVNPWNITEV 517 (673)
Q Consensus 449 ~~~el~aly~--~ADv~vv~Sl~EG----f~Lv~lEamA~~~~~~g~lVlSe~aG~~~---~l--g~~gllVnP~D~~~l 517 (673)
+.++....+. ..|++++-....+ -|+..++.+........++++|....... .+ |..|++..|.+.+++
T Consensus 37 ~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l 116 (216)
T PRK10840 37 DSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDL 116 (216)
T ss_pred CHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 4455555554 3688887643333 46666766653222234567776654332 12 678999999999999
Q ss_pred HHHHHHHhc
Q 005855 518 ANAIARALN 526 (673)
Q Consensus 518 A~aI~~aL~ 526 (673)
.++|..++.
T Consensus 117 ~~ai~~v~~ 125 (216)
T PRK10840 117 PKALAALQK 125 (216)
T ss_pred HHHHHHHHC
Confidence 999998876
No 244
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=2e+02 Score=29.45 Aligned_cols=38 Identities=34% Similarity=0.386 Sum_probs=24.3
Q ss_pred ceEEEeCCCCchhhccCc----eEEECCCCHHHHHHHHHHHh
Q 005855 488 GVLILSEFAGAAQSLGAG----AILVNPWNITEVANAIARAL 525 (673)
Q Consensus 488 g~lVlSe~aG~~~~lg~~----gllVnP~D~~~lA~aI~~aL 525 (673)
.|++..|.+|++--+|.+ .+=|+|.+-.++|.||+--+
T Consensus 186 sPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSM 227 (259)
T KOG2884|consen 186 SPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSM 227 (259)
T ss_pred CceeccCcccccccccccccccccCCCcccCHHHHHHHHhhH
Confidence 566666655555444322 34578887789999887444
No 245
>PHA02597 30.2 hypothetical protein; Provisional
Probab=46.04 E-value=10 Score=37.27 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.0
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
..+.|.+.++|+.|.+. ..++++|..+
T Consensus 73 ~~~~pG~~e~L~~L~~~--~~~~i~Tn~~ 99 (197)
T PHA02597 73 LSAYDDALDVINKLKED--YDFVAVTALG 99 (197)
T ss_pred ccCCCCHHHHHHHHHhc--CCEEEEeCCc
Confidence 35788899999999764 4567777754
No 246
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=45.58 E-value=11 Score=37.97 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.2
Q ss_pred CCChhHHHHHH-HHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 622 KLHPDLKQPLN-ALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 622 ~p~~~~~~~L~-~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
.+.|.+.+.|+ .|.+. ...|+|+|+.....++.+...
T Consensus 94 ~l~pga~e~L~~~l~~~-G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 94 TAFPLVAERLRQYLESS-DADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCccHHHHHHHHHHhC-CCEEEEEcCCcHHHHHHHHHh
Confidence 46789999995 66643 679999999999988877644
No 247
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=45.38 E-value=11 Score=36.52 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
++.+.+.+.|+.|. -.++|+|+.+...++..+....
T Consensus 84 ~~~~g~~~~L~~L~----~~~~i~Tn~~~~~~~~~l~~~g 119 (184)
T TIGR01993 84 KPDPELRNLLLRLP----GRKIIFTNGDRAHARRALNRLG 119 (184)
T ss_pred CCCHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHHcC
Confidence 46788999999886 3689999999987777776543
No 248
>PRK08238 hypothetical protein; Validated
Probab=45.26 E-value=38 Score=38.79 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
+..+++.+.|+++.+. .-.++|+|+.....++.......
T Consensus 72 p~~pga~e~L~~lk~~-G~~v~LaTas~~~~a~~i~~~lG 110 (479)
T PRK08238 72 PYNEEVLDYLRAERAA-GRKLVLATASDERLAQAVAAHLG 110 (479)
T ss_pred CCChhHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHcC
Confidence 4568999999998764 56899999999998887766543
No 249
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=45.16 E-value=11 Score=37.22 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLD 658 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~ 658 (673)
.+.+++.++|+.|.+. .-.++|+|+.+.. ++..+.
T Consensus 105 ~~~~g~~~~l~~L~~~-g~~~~i~Sn~~~~-~~~~l~ 139 (203)
T TIGR02252 105 QVYPDAIKLLKDLRER-GLILGVISNFDSR-LRGLLE 139 (203)
T ss_pred eeCcCHHHHHHHHHHC-CCEEEEEeCCchh-HHHHHH
Confidence 3567888899998764 4578999987654 344443
No 250
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=45.03 E-value=3.3e+02 Score=27.92 Aligned_cols=114 Identities=16% Similarity=0.294 Sum_probs=63.5
Q ss_pred CCchhhhhcCCcchHHHHhhhcCCEEEEeCHHHHHHHHHHHHHHhccccCCCceeeCCeee-EEEEeecCcChhhhhhhh
Q 005855 266 FPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLT-RVAAFPIGIDSERFIRAL 344 (673)
Q Consensus 266 fP~~e~fr~lp~r~~il~~ll~aDlIgF~t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~-~v~viP~GID~~~f~~~~ 344 (673)
||.+++||.+. +..|++-+..-|-|-|.|+.-+-|=+. + .|. ....+ .+.+| +|+..+.+.+
T Consensus 33 fpDydvfrAfT-S~kIIkkLK~rdgi~~dTP~~aL~klk---~-~gy---------~eviiQ~lhiI-pG~EyEklvr-- 95 (265)
T COG4822 33 FPDYDVFRAFT-SRKIIKKLKERDGIDFDTPIQALNKLK---D-QGY---------EEVIIQPLHII-PGIEYEKLVR-- 95 (265)
T ss_pred CccHHHHHHHh-HHHHHHHHHhhcCcccCCHHHHHHHHH---H-ccc---------hheeeeeeeec-CchHHHHHHH--
Confidence 89999999875 456888889999999999966544332 1 121 11111 23333 4666555432
Q ss_pred cCChhHHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCC
Q 005855 345 EINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPT 408 (673)
Q Consensus 345 ~~~~~~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~ps 408 (673)
.++.++..| +.+.++.==|.+.-.....++|+ ....|-++.+=.+|..|-++
T Consensus 96 -------~V~~~~~dF--~~lkig~PlLy~k~DYe~~v~ai---k~~~ppl~k~e~~vlmgHGt 147 (265)
T COG4822 96 -------EVNKYSNDF--KRLKIGRPLLYYKNDYEICVEAI---KDQIPPLNKDEILVLMGHGT 147 (265)
T ss_pred -------HHHHHhhhh--heeecCCceeechhhHHHHHHHH---HHhcCCcCcCeEEEEEecCC
Confidence 333444444 22333332233333444444554 56688777666666677554
No 251
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=44.08 E-value=13 Score=39.43 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
.+.|.+.++|+.|.+. .-.++|+|+.....++..+..
T Consensus 144 ~l~pGv~elL~~L~~~-g~~l~IvTn~~~~~~~~~l~~ 180 (286)
T PLN02779 144 PLRPGVLRLMDEALAA-GIKVAVCSTSNEKAVSKIVNT 180 (286)
T ss_pred CchhhHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHH
Confidence 5677888899998764 568999999999887766653
No 252
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=43.78 E-value=12 Score=38.10 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=29.6
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
..+.+++.++|+.|-+. .-.++|+|+-.+..++..+..
T Consensus 92 ~~~~~g~~e~L~~Lk~~-g~~~~i~Tn~~~~~~~~~l~~ 129 (224)
T PRK14988 92 AVLREDTVPFLEALKAS-GKRRILLTNAHPHNLAVKLEH 129 (224)
T ss_pred CCcCCCHHHHHHHHHhC-CCeEEEEeCcCHHHHHHHHHH
Confidence 45778999999999874 457999999888776665544
No 253
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=43.59 E-value=12 Score=37.28 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=30.9
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
..+.+.+.++|+.|.+. .-.++|+||.....++..+...
T Consensus 81 ~~~~~g~~~~l~~L~~~-g~~~~i~S~~~~~~~~~~l~~~ 119 (214)
T PRK13288 81 VTEYETVYETLKTLKKQ-GYKLGIVTTKMRDTVEMGLKLT 119 (214)
T ss_pred cccCcCHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHc
Confidence 35678899999999875 4689999999998877666543
No 254
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=43.41 E-value=9.4 Score=37.60 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 628 KQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 628 ~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++|+.|.+. .-.++|+||.....++..+....
T Consensus 112 ~~~L~~l~~~-g~~~~i~T~~~~~~~~~~l~~~g 144 (197)
T TIGR01548 112 KGLLRELHRA-PKGMAVVTGRPRKDAAKFLTTHG 144 (197)
T ss_pred HHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHcC
Confidence 6777777654 46789999999988887776543
No 255
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=42.93 E-value=14 Score=37.16 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhccCeEEEEcccccccCC
Q 005855 587 LRSNNRLLILGFNATLTEP 605 (673)
Q Consensus 587 ~~s~~rll~lDyDGTL~~~ 605 (673)
.+..-+.++||+||||++.
T Consensus 3 ~~~~~k~iiFD~DGTL~d~ 21 (222)
T PRK10826 3 TPRQILAAIFDMDGLLIDS 21 (222)
T ss_pred CcccCcEEEEcCCCCCCcC
No 256
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=42.62 E-value=10 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=25.8
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
.++.+.+.++|+.|-+. .-.++|+||-.....+.+.
T Consensus 180 l~l~pGa~elL~~Lk~~-G~~~aIvSgg~~~~~~~l~ 215 (322)
T PRK11133 180 LPLMPGLTELVLKLQAL-GWKVAIASGGFTYFADYLR 215 (322)
T ss_pred CCCChhHHHHHHHHHHc-CCEEEEEECCcchhHHHHH
Confidence 45778888889888764 4578999998765444443
No 257
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=42.04 E-value=4e+02 Score=28.07 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCEEEEeCccch
Q 005855 223 DVVNKHYKDGDVVWCHDYHLM 243 (673)
Q Consensus 223 ~~i~~~~~~~DvVwvHDyhl~ 243 (673)
++|.+..+.-|+|.|-.||--
T Consensus 57 ~~i~~~ak~a~VitISHYHYD 77 (304)
T COG2248 57 EKIQRYAKKADVITISHYHYD 77 (304)
T ss_pred HHHHHHHhhCCEEEEeeeccc
Confidence 566777777899999888864
No 258
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=41.07 E-value=5.3e+02 Score=28.79 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC-------CchhhccCceEEE--CCCCHH
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA-------GAAQSLGAGAILV--NPWNIT 515 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a-------G~~~~lg~~gllV--nP~D~~ 515 (673)
...+++.+ ++..||+++.. -|+|. ..|++..+ .|+|+=-.. ...+.+| .|+.+ .+...+
T Consensus 289 ~~~~p~~~---~l~~ad~vI~h---GG~gt-t~eaL~~g----vP~vv~P~~~DQ~~nA~rve~~G-~G~~l~~~~l~~~ 356 (406)
T COG1819 289 ADYVPQLE---LLPRADAVIHH---GGAGT-TSEALYAG----VPLVVIPDGADQPLNAERVEELG-AGIALPFEELTEE 356 (406)
T ss_pred ecCCCHHH---HhhhcCEEEec---CCcch-HHHHHHcC----CCEEEecCCcchhHHHHHHHHcC-CceecCcccCCHH
Confidence 45666654 88999999975 46765 46888883 444432211 1122223 34444 479999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhHHHhhCCHHHHHHHH
Q 005855 516 EVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETF 555 (673)
Q Consensus 516 ~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~~~~~W~~~f 555 (673)
.++++|.++|+++. -+++.+++.+...+++...=+...
T Consensus 357 ~l~~av~~vL~~~~--~~~~~~~~~~~~~~~~g~~~~a~~ 394 (406)
T COG1819 357 RLRAAVNEVLADDS--YRRAAERLAEEFKEEDGPAKAADL 394 (406)
T ss_pred HHHHHHHHHhcCHH--HHHHHHHHHHHhhhcccHHHHHHH
Confidence 99999999998643 334445555666666554433333
No 259
>PRK11587 putative phosphatase; Provisional
Probab=41.05 E-value=14 Score=37.03 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.6
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
..+.|.+.+.|+.|.+. .-.++|+|+.+....+..+
T Consensus 82 ~~~~pg~~e~L~~L~~~-g~~~~ivTn~~~~~~~~~l 117 (218)
T PRK11587 82 ITALPGAIALLNHLNKL-GIPWAIVTSGSVPVASARH 117 (218)
T ss_pred ceeCcCHHHHHHHHHHc-CCcEEEEcCCCchHHHHHH
Confidence 35678999999999764 5689999998876544433
No 260
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=41.03 E-value=12 Score=36.08 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.3
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
.+.|++.++|+.|.+. .-.++|+|+..
T Consensus 87 ~~~pg~~~~L~~L~~~-g~~~~i~s~~~ 113 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKN-NIKIALASASK 113 (185)
T ss_pred ccCccHHHHHHHHHHC-CCeEEEEeCCc
Confidence 5678889999999865 56888999754
No 261
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=40.90 E-value=14 Score=37.74 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=19.5
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
.+.+++.+.|+.|.+ +-.++|+|+.+.
T Consensus 113 ~~~~gv~~~L~~L~~--~~~l~i~Tn~~~ 139 (238)
T PRK10748 113 DVPQATHDTLKQLAK--KWPLVAITNGNA 139 (238)
T ss_pred CCCccHHHHHHHHHc--CCCEEEEECCCc
Confidence 455788999999975 356777777544
No 262
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=40.67 E-value=14 Score=36.71 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=0.0
Q ss_pred eEEEEcccccccCCCC
Q 005855 592 RLLILGFNATLTEPVD 607 (673)
Q Consensus 592 rll~lDyDGTL~~~~~ 607 (673)
++++||+||||.+...
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
No 263
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=39.78 E-value=17 Score=36.13 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
.+.+++.++|+.|.+. .-.++|+|+.....++..+..
T Consensus 94 ~~~~g~~~~L~~L~~~-g~~~~i~Tn~~~~~~~~~l~~ 130 (221)
T TIGR02253 94 RVYPGVRDTLMELRES-GYRLGIITDGLPVKQWEKLER 130 (221)
T ss_pred CCCCCHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHh
Confidence 5678899999999864 567999999987766555544
No 264
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=39.33 E-value=15 Score=38.08 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||+.
T Consensus 5 k~vIFDlDGTLiD 17 (267)
T PRK13478 5 QAVIFDWAGTTVD 17 (267)
T ss_pred EEEEEcCCCCeec
No 265
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=39.19 E-value=3.1e+02 Score=28.25 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=65.6
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEE
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHH 443 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~ 443 (673)
-++++-+|+...-=+.....-+..|+... .+|.+| |+-+...+++.+-+...+...+++. . +..
T Consensus 3 ~ll~s~~~~~~~~~l~~~~~~~~~~~~~~----~~v~fI----PtAs~~~~~~~y~~~~~~af~~lG~-------~-v~~ 66 (233)
T PRK05282 3 LLLLSNSTLPGTGYLEHALPLIAELLAGR----RKAVFI----PYAGVTQSWDDYTAKVAEALAPLGI-------E-VTG 66 (233)
T ss_pred EEEEecCCCCCCchHHHHHHHHHHHHcCC----CeEEEE----CCCCCCCCHHHHHHHHHHHHHHCCC-------E-EEE
Confidence 35677788876443466666667666532 245554 4433333444555555555555442 2 333
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCC----------CcCCChhHHHHHhhccCCCceEEEeCCCCchh
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSL----------RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQ 500 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl----------~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~ 500 (673)
+.. .++..+.+..||+..++-= .-|+--...|++.. |.+++...||+.-
T Consensus 67 l~~---~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~-----G~~~~G~SAGAii 125 (233)
T PRK05282 67 IHR---VADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKN-----GTPYIGWSAGANV 125 (233)
T ss_pred ecc---chhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHC-----CCEEEEECHHHHh
Confidence 332 2445677899998888742 23444456787664 6778888888753
No 266
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=39.13 E-value=15 Score=36.63 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||+.
T Consensus 7 ~~iiFD~DGTL~d 19 (226)
T PRK13222 7 RAVAFDLDGTLVD 19 (226)
T ss_pred cEEEEcCCccccc
No 267
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=38.91 E-value=15 Score=37.24 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=29.2
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
..+.+++.++|+.|.+. .-.++|+|+.+...++..+..
T Consensus 94 ~~~~pg~~~~L~~L~~~-g~~l~i~Tn~~~~~~~~~l~~ 131 (229)
T PRK13226 94 SQLFDGVEGMLQRLECA-GCVWGIVTNKPEYLARLILPQ 131 (229)
T ss_pred CeeCCCHHHHHHHHHHC-CCeEEEECCCCHHHHHHHHHH
Confidence 45678899999999764 458899999998776665544
No 268
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=38.64 E-value=16 Score=37.54 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
+.++||+||||+.
T Consensus 3 k~viFD~DGTLiD 15 (253)
T TIGR01422 3 EAVIFDWAGTTVD 15 (253)
T ss_pred eEEEEeCCCCeec
No 269
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=38.45 E-value=17 Score=36.42 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLV 660 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~ 660 (673)
.+.+.+.++|+.| +..++|+|+..+..++..+...
T Consensus 88 ~~~~gv~~~L~~L----~~~~~ivTn~~~~~~~~~l~~~ 122 (221)
T PRK10563 88 EPIAGANALLESI----TVPMCVVSNGPVSKMQHSLGKT 122 (221)
T ss_pred CcCCCHHHHHHHc----CCCEEEEeCCcHHHHHHHHHhc
Confidence 4566777778887 3789999999988777766543
No 270
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=38.00 E-value=99 Score=29.98 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHcC---EEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEECCCCHHHHHHH
Q 005855 449 DFPALCALYAVTD---VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVANA 520 (673)
Q Consensus 449 ~~~el~aly~~AD---v~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVnP~D~~~lA~a 520 (673)
+.+|-.+..+.+- ..|---+-+|=||.++|++.....+-..+|++-++.++.-+ |..-+|..|-|.+++..|
T Consensus 41 ~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aA 120 (182)
T COG4567 41 SVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAA 120 (182)
T ss_pred cHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHH
Confidence 3455555444431 33334456899999999999877777889999999888665 555689999999999998
Q ss_pred HHHH
Q 005855 521 IARA 524 (673)
Q Consensus 521 I~~a 524 (673)
+.+.
T Consensus 121 l~~~ 124 (182)
T COG4567 121 LLRR 124 (182)
T ss_pred Hhhc
Confidence 8776
No 271
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=37.43 E-value=17 Score=37.96 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||+.
T Consensus 25 k~vIFDlDGTLvD 37 (260)
T PLN03243 25 LGVVLEWEGVIVE 37 (260)
T ss_pred eEEEEeCCCceeC
No 272
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=37.12 E-value=17 Score=35.02 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCeEEEEcCCCHHhHHHHhc
Q 005855 629 QPLNALCHDPKTTIVVLSGSDRNVLDKVLD 658 (673)
Q Consensus 629 ~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~ 658 (673)
+.|+.|.+. ...|+|+||.....++....
T Consensus 96 e~i~~~~~~-~~~v~IvS~~~~~~i~~~~~ 124 (192)
T PF12710_consen 96 ELIRELKDN-GIKVVIVSGSPDEIIEPIAE 124 (192)
T ss_dssp HHHHHHHHT-TSEEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEEECCCcHHHHHHHHH
Confidence 777776543 78899999999988888764
No 273
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=37.03 E-value=18 Score=37.30 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
+.++||+||||+.
T Consensus 23 k~viFDlDGTLiD 35 (248)
T PLN02770 23 EAVLFDVDGTLCD 35 (248)
T ss_pred CEEEEcCCCccCc
No 274
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=36.73 E-value=86 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHH
Q 005855 379 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQ 416 (673)
Q Consensus 379 ~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~ 416 (673)
..|...++++++.+|+.+ +|.||..+..|..-|.
T Consensus 49 ~~K~~~i~~i~~~fP~~k----fiLIGDsgq~DpeiY~ 82 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERK----FILIGDSGQHDPEIYA 82 (100)
T ss_pred hHHHHHHHHHHHHCCCCc----EEEEeeCCCcCHHHHH
Confidence 478889999999999865 7888876666644443
No 275
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=36.36 E-value=19 Score=35.90 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=0.0
Q ss_pred eEEEEcccccccCCCC
Q 005855 592 RLLILGFNATLTEPVD 607 (673)
Q Consensus 592 rll~lDyDGTL~~~~~ 607 (673)
++++||+||||+...+
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
No 276
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=36.29 E-value=2.8e+02 Score=30.56 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=98.5
Q ss_pred CceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCC-CChHHHHHHHHHHHHHHHhhcc-ccCCCCccc
Q 005855 363 RKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTR-TDVPEYQRLTSQVHEIVGRING-RFGTLTAVP 440 (673)
Q Consensus 363 ~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr-~~~~ey~~l~~~l~~lv~~IN~-~~g~~~~~p 440 (673)
+++-++=--++-.|.-..=+.+.+.+-+..|+.. ..+.|.+.-. .+.+++.. ++++++. +.|.
T Consensus 190 ~RvavfEPNi~vvK~~~~PmLi~E~aYR~~P~~v---~~~~V~Nt~~~ke~~~F~~-------f~~~ldlvr~gk----- 254 (364)
T PF10933_consen 190 KRVAVFEPNISVVKTCFIPMLICEEAYRADPDAV---EHVYVTNTYHLKEHPTFVN-------FANSLDLVRDGK----- 254 (364)
T ss_pred ceEEEecCCceEEeecCccHHHHHHHHHhChhhc---ceEEEecchhhhcCHHHHH-------HHHhhHHhhcCe-----
Confidence 3444444444555555556677788888889864 3455553211 12233322 3333322 2232
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHH
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANA 520 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~a 520 (673)
-.|.|..+..+..+=| +|+.|.--.--|+|..-+|++--+ =|+|- -++.+++-|+.-+-+|..+=|++
T Consensus 255 -asfegR~~~p~fla~~--tD~VvSHqWeN~lNYlY~daLygg----YPLVH-----NS~~l~d~GYYY~~fD~~~G~r~ 322 (364)
T PF10933_consen 255 -ASFEGRFDFPDFLAQH--TDAVVSHQWENPLNYLYYDALYGG----YPLVH-----NSPLLKDVGYYYPDFDAFEGARQ 322 (364)
T ss_pred -eEEeeecChHHHHHhC--CCEEEeccccchhhHHHHHHHhcC----CCccc-----CcchhcccCcCCCCccHHHHHHH
Confidence 2245666666666644 799998888899999999998863 56663 24566678999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhHHHhhC
Q 005855 521 IARALNMSPEEREKRHWHNFTHVTTH 546 (673)
Q Consensus 521 I~~aL~m~~~er~~r~~~~~~~v~~~ 546 (673)
+.+|+...+.....-.+++++.+.+.
T Consensus 323 L~~A~~~HD~~~~~Y~~ra~~~l~~~ 348 (364)
T PF10933_consen 323 LLRAIREHDADLDAYRARARRLLDRL 348 (364)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhh
Confidence 99999876644444444555555443
No 277
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=35.60 E-value=16 Score=34.15 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=0.0
Q ss_pred EEEEcccccccC
Q 005855 593 LLILGFNATLTE 604 (673)
Q Consensus 593 ll~lDyDGTL~~ 604 (673)
+++||+||||.+
T Consensus 1 ~iifD~DGTL~d 12 (154)
T TIGR01549 1 AILFDIDGTLVD 12 (154)
T ss_pred CeEecCCCcccc
No 278
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=35.56 E-value=57 Score=34.87 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=32.4
Q ss_pred eEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcC---CCHHhHHHHh
Q 005855 592 RLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSG---SDRNVLDKVL 657 (673)
Q Consensus 592 rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSG---R~~~~L~~~~ 657 (673)
-.|+||.||.|+-- ..|-|.+.+.|+.|.+.++. |+++|. +++.+.-+-|
T Consensus 23 DtfifDcDGVlW~g---------------~~~ipGs~e~l~~L~~~gK~-i~fvTNNStksr~~y~kK~ 75 (306)
T KOG2882|consen 23 DTFIFDCDGVLWLG---------------EKPIPGSPEALNLLKSLGKQ-IIFVTNNSTKSREQYMKKF 75 (306)
T ss_pred CEEEEcCCcceeec---------------CCCCCChHHHHHHHHHcCCc-EEEEeCCCcchHHHHHHHH
Confidence 35899999999962 22346778888888888754 555554 4444444433
No 279
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=35.38 E-value=1e+02 Score=32.87 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=41.5
Q ss_pred ccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhc
Q 005855 589 SNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLD 658 (673)
Q Consensus 589 s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~ 658 (673)
....++++|.|.||..... ....+.+.+.+.|..|-+. .+.+++=|--+++-....+.
T Consensus 120 ~~phVIVfDlD~TLItd~~-----------~v~Ir~~~v~~sL~~Lk~~-g~vLvLWSyG~~eHV~~sl~ 177 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG-----------DVRIRDPAVYDSLRELKEQ-GCVLVLWSYGNREHVRHSLK 177 (297)
T ss_pred CCCcEEEEECCCcccccCC-----------ccccCChHHHHHHHHHHHc-CCEEEEecCCCHHHHHHHHH
Confidence 3457999999999997643 2345678999999999985 45777777666654444433
No 280
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=35.21 E-value=1.7e+02 Score=27.20 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHH
Q 005855 380 QKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAV 459 (673)
Q Consensus 380 ~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~ 459 (673)
..+.++..+.+++. +..++||.|-..++.+ .+....+++.++++..+|+ .||.++....+-.+-...|..
T Consensus 35 ~~~~~l~~~i~~~~-----~~~iVvGlP~~~dG~~-~~~a~~v~~f~~~L~~~~~----~~v~~~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 35 PDWSRIEELLKEWT-----PDKIVVGLPLNMDGTE-GPLTERAQKFANRLEGRFG----VPVVLWDERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHHHHcC-----CCEEEEeccCCCCcCc-CHHHHHHHHHHHHHHHHhC----CCEEEEcCCcCHHHHHHHHHH
Confidence 55677777877763 4467899887666543 3556677788888877664 378988888887766666665
Q ss_pred c
Q 005855 460 T 460 (673)
Q Consensus 460 A 460 (673)
.
T Consensus 105 ~ 105 (130)
T TIGR00250 105 R 105 (130)
T ss_pred c
Confidence 3
No 281
>PRK09449 dUMP phosphatase; Provisional
Probab=34.84 E-value=19 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
.|.+++.+.|+.|.+ +-.++|+|+...+.++..+..
T Consensus 95 ~~~~g~~~~L~~L~~--~~~~~i~Tn~~~~~~~~~l~~ 130 (224)
T PRK09449 95 TPLPGAVELLNALRG--KVKMGIITNGFTELQQVRLER 130 (224)
T ss_pred ccCccHHHHHHHHHh--CCeEEEEeCCcHHHHHHHHHh
Confidence 577889999999984 478999999888776665544
No 282
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.59 E-value=3.9e+02 Score=28.41 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=25.9
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCCCeEEeEe
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFL 262 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~~~Ig~fl 262 (673)
++|+|..-.....++..+|++.+.+.+++--.
T Consensus 70 ~Pdl~I~aGrrta~l~~~lkk~~~~~~vVqI~ 101 (329)
T COG3660 70 RPDLIITAGRRTAPLAFYLKKKFGGIKVVQIQ 101 (329)
T ss_pred CCceEEecccchhHHHHHHHHhcCCceEEEee
Confidence 46898889999999999999998886555433
No 283
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.41 E-value=5.7e+02 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcC
Q 005855 444 LDRSLDFPALCALYAVTDVALVTS 467 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~S 467 (673)
+.+..+-.|+.++++.||++|-+-
T Consensus 239 l~g~~sL~el~ali~~a~l~I~~D 262 (319)
T TIGR02193 239 VLPKMSLAEVAALLAGADAVVGVD 262 (319)
T ss_pred ecCCCCHHHHHHHHHcCCEEEeCC
Confidence 357889999999999999999764
No 284
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=33.96 E-value=19 Score=36.20 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.+.|.+.+.|+.|-+. ..++|+||-....++.++....
T Consensus 68 ~l~pga~ell~~lk~~--~~~~IVS~~~~~~~~~il~~lg 105 (203)
T TIGR02137 68 KPLEGAVEFVDWLRER--FQVVILSDTFYEFSQPLMRQLG 105 (203)
T ss_pred CCCccHHHHHHHHHhC--CeEEEEeCChHHHHHHHHHHcC
Confidence 6788999999999874 5999999999987777665543
No 285
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=33.75 E-value=18 Score=34.62 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=11.9
Q ss_pred EEEEcccccccCCC
Q 005855 593 LLILGFNATLTEPV 606 (673)
Q Consensus 593 ll~lDyDGTL~~~~ 606 (673)
+++||+||||+...
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 37899999999864
No 286
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.54 E-value=3.7e+02 Score=28.73 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhC
Q 005855 352 HIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEEN 392 (673)
Q Consensus 352 ~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~ 392 (673)
.+..++++++.-.++++-..+.-..-....+.|++.+-+..
T Consensus 31 ~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~ 71 (319)
T PF02601_consen 31 FLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMG 71 (319)
T ss_pred HHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcc
Confidence 33445556677789999999988888899999999886543
No 287
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=33.26 E-value=22 Score=37.33 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
.+.+.+.+.|+.|.+. .-.++|+||.+...++..+..
T Consensus 101 ~~~~g~~e~L~~Lk~~-g~~l~ivTn~~~~~~~~~l~~ 137 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQ-GVEMALITNKPERFVAPLLDQ 137 (272)
T ss_pred ccCCCHHHHHHHHHHC-CCeEEEEECCcHHHHHHHHHH
Confidence 4678999999999763 468999999998877766654
No 288
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=33.25 E-value=17 Score=35.90 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEEcccccccC
Q 005855 594 LILGFNATLTE 604 (673)
Q Consensus 594 l~lDyDGTL~~ 604 (673)
++||+||||+.
T Consensus 1 viFD~DGTL~D 11 (213)
T TIGR01449 1 VLFDLDGTLVD 11 (213)
T ss_pred CeecCCCcccc
No 289
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=32.44 E-value=24 Score=34.96 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCH
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDR 650 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~ 650 (673)
.+.+++.++|+.|.+. .-.++|+|+...
T Consensus 94 ~~~~~~~~~L~~L~~~-g~~l~i~Sn~~~ 121 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAK-GFKTACITNNFP 121 (211)
T ss_pred ccChhHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 4678899999999764 468899997643
No 290
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=32.14 E-value=24 Score=34.74 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHH
Q 005855 622 KLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKV 656 (673)
Q Consensus 622 ~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~ 656 (673)
.+.+++.+.|+.|.+. .-.++|+|+.+....+.+
T Consensus 84 ~~~~g~~e~L~~l~~~-g~~~~i~Sn~~~~~~~~~ 117 (199)
T PRK09456 84 ALRPEVIAIMHKLREQ-GHRVVVLSNTNRLHTTFW 117 (199)
T ss_pred ccCHHHHHHHHHHHhC-CCcEEEEcCCchhhHHHH
Confidence 4678899999999874 468999999887665544
No 291
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=32.03 E-value=18 Score=35.69 Aligned_cols=11 Identities=9% Similarity=0.558 Sum_probs=0.0
Q ss_pred EEEcccccccC
Q 005855 594 LILGFNATLTE 604 (673)
Q Consensus 594 l~lDyDGTL~~ 604 (673)
++||+||||..
T Consensus 1 iiFDlDGTL~D 11 (205)
T TIGR01454 1 VVFDLDGVLVD 11 (205)
T ss_pred CeecCcCcccc
No 292
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=31.90 E-value=24 Score=35.78 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=31.7
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
.++-+.+.++|..|-+. .-.+++.|+.++..++..+....
T Consensus 85 ~~~~pGv~~~l~~L~~~-~i~~avaS~s~~~~~~~~L~~~g 124 (221)
T COG0637 85 LKPIPGVVELLEQLKAR-GIPLAVASSSPRRAAERVLARLG 124 (221)
T ss_pred CCCCccHHHHHHHHHhc-CCcEEEecCChHHHHHHHHHHcc
Confidence 47788999999999875 36789999999887777775444
No 293
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.44 E-value=2.1e+02 Score=26.89 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHHHHHHc
Q 005855 381 KLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVT 460 (673)
Q Consensus 381 ~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~aly~~A 460 (673)
.+..+..+.++++ +..++||.|...++.+ .+....+++.+.++..+|+ .||++.....+-.+-...|..+
T Consensus 42 ~~~~l~~~i~~~~-----i~~iVvGlP~~~~G~~-~~~~~~v~~f~~~L~~~~~----~~v~~~DEr~TT~~A~~~l~~~ 111 (138)
T PRK00109 42 DWDRLEKLIKEWQ-----PDGLVVGLPLNMDGTE-GPRTERARKFANRLEGRFG----LPVVLVDERLSTVEAERALADV 111 (138)
T ss_pred HHHHHHHHHHHhC-----CCEEEEeccCCCCCCc-CHHHHHHHHHHHHHHHHhC----CCEEEEcCCcCHHHHHHHHHHc
Confidence 3566666766653 5578899887655543 3455667777777766653 3799888888877766666554
No 294
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.78 E-value=26 Score=34.37 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||..
T Consensus 2 k~viFD~dgTLiD 14 (198)
T TIGR01428 2 KALVFDVYGTLFD 14 (198)
T ss_pred cEEEEeCCCcCcc
No 295
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=30.47 E-value=7.1e+02 Score=26.76 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhc
Q 005855 449 DFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQ 483 (673)
Q Consensus 449 ~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~ 483 (673)
+..=+.+++..||.+++|. |..++ +.||+++|
T Consensus 218 ~~nPy~~~La~ad~i~VT~--DSvSM-vsEA~~tG 249 (311)
T PF06258_consen 218 GENPYLGFLAAADAIVVTE--DSVSM-VSEAAATG 249 (311)
T ss_pred CCCcHHHHHHhCCEEEEcC--ccHHH-HHHHHHcC
Confidence 3445788999999999986 44554 46888884
No 296
>PLN00414 glycosyltransferase family protein
Probab=30.41 E-value=8.4e+02 Score=27.60 Aligned_cols=109 Identities=10% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe----CCCCchhhc--c-CceEEECC-----C
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS----EFAGAAQSL--G-AGAILVNP-----W 512 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS----e~aG~~~~l--g-~~gllVnP-----~ 512 (673)
.+.+++.++.+. .+.++||- .-|+| ..+|++++| .|+|+= +..-.+..+ . .-|+.+.. -
T Consensus 317 ~~w~PQ~~vL~h-~~v~~fvt---H~G~n-S~~Ea~~~G----vP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~ 387 (446)
T PLN00414 317 EGWVEQPLILSH-PSVGCFVN---HCGFG-SMWESLVSD----CQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWF 387 (446)
T ss_pred eccCCHHHHhcC-CccceEEe---cCchh-HHHHHHHcC----CCEEecCcccchHHHHHHHHHHhCeEEEeccccCCcc
Confidence 467787765443 33345653 45665 568999993 444432 221122222 1 33566632 4
Q ss_pred CHHHHHHHHHHHhcCCHHH---HHHHHHHhhHHHhhC-CHHHHHHHHHHHHHHh
Q 005855 513 NITEVANAIARALNMSPEE---REKRHWHNFTHVTTH-TAQEWAETFVSELNDT 562 (673)
Q Consensus 513 D~~~lA~aI~~aL~m~~~e---r~~r~~~~~~~v~~~-~~~~W~~~fl~~L~~~ 562 (673)
+.+++++++.+++..+.++ .+++.++.++.+..- ....+.++|++.+++.
T Consensus 388 ~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 388 SKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENE 441 (446)
T ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 7899999999999765322 222333333333332 3256677787777543
No 297
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=30.35 E-value=47 Score=31.32 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred EEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 594 LILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 594 l~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
...++++|++.- -+.-+++.+.++.|..- ..|||.||-....|.+....
T Consensus 17 ~~~~v~~tiatg---------------Gklf~ev~e~iqeL~d~--V~i~IASgDr~gsl~~lae~ 65 (152)
T COG4087 17 KAGKVLYTIATG---------------GKLFSEVSETIQELHDM--VDIYIASGDRKGSLVQLAEF 65 (152)
T ss_pred ecceEEEEEccC---------------cEEcHhhHHHHHHHHHh--heEEEecCCcchHHHHHHHH
Confidence 345889999853 23346788888888874 89999999999888877654
No 298
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=29.95 E-value=1.6e+02 Score=35.29 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----c----CceEEECCCCHH
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----G----AGAILVNPWNIT 515 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g----~~gllVnP~D~~ 515 (673)
-+.++.+.+...++.-++.++|.-|+-.=+.++|+-.++ .+-..+|++...-..+.+ + .--++.-|+|.-
T Consensus 231 vgAm~~~~~~~~l~~~~lVIt~gdR~Di~l~al~~~~~~-~~~a~lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~~dT~ 309 (684)
T PRK05632 231 VCARSIPNMLEHLKPGSLVVTPGDRSDVILAALLAAMNG-PPIAGLLLTGGYEPDPRIAKLCEGAFETGLPVLSVDTNTY 309 (684)
T ss_pred EEecchHHHHHhccCCcEEEeCCChHHHHHHHHHhcccC-CCceEEEEcCCCCCCHHHHHHHhhcccCCCCEEEecCCHH
Confidence 356677888888887788888788877667777762111 001226666544433332 1 123666799999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhHHHhhC-CHHHHHHH
Q 005855 516 EVANAIARALNMSPEEREKRHWHNFTHVTTH-TAQEWAET 554 (673)
Q Consensus 516 ~lA~aI~~aL~m~~~er~~r~~~~~~~v~~~-~~~~W~~~ 554 (673)
+.|..|.++..--..+-.++...+.+.+.+| |..+|.+.
T Consensus 310 ~ta~~i~~~~~~i~~~d~~ki~~~~~~~~~~vD~~~l~~~ 349 (684)
T PRK05632 310 QTALRLQSFNGEVPVDDHERIETVLELVASHVDTDELLER 349 (684)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999776421112233456667777777 87777775
No 299
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=29.53 E-value=8.8e+02 Score=27.55 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCceEEEeecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhh
Q 005855 350 QVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRI 429 (673)
Q Consensus 350 ~~~~~~lr~~~~~~~iIl~VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~I 429 (673)
++.+..++++++.-+++++--...-..-..+.++|++.+-+.. + +-+++|| |++| .+++|+
T Consensus 150 rDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~-~----~DvlIVa---RGGG--------SiEDLW--- 210 (440)
T COG1570 150 RDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRG-D----VDVLIVA---RGGG--------SIEDLW--- 210 (440)
T ss_pred HHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccC-C----CCEEEEe---cCcc--------hHHHHh---
Confidence 3445567788888899999999998999999999999886543 2 3345565 2332 133331
Q ss_pred ccccCCCCcccEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhh
Q 005855 430 NGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVAC 482 (673)
Q Consensus 430 N~~~g~~~~~pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~ 482 (673)
..+.+.++.-...|.+-|++.+-----.+...++|+
T Consensus 211 -----------------~FNdE~vaRAi~~s~iPvISAVGHEtD~tL~DfVAD 246 (440)
T COG1570 211 -----------------AFNDEIVARAIAASRIPVISAVGHETDFTLADFVAD 246 (440)
T ss_pred -----------------ccChHHHHHHHHhCCCCeEeecccCCCccHHHhhhh
Confidence 124566666677777777777643344556666666
No 300
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=28.13 E-value=30 Score=34.89 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
+.++||+||||+.
T Consensus 5 ~~iiFDlDGTL~D 17 (220)
T COG0546 5 KAILFDLDGTLVD 17 (220)
T ss_pred CEEEEeCCCcccc
No 301
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=28.03 E-value=26 Score=34.30 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=0.0
Q ss_pred EEEEcccccccC
Q 005855 593 LLILGFNATLTE 604 (673)
Q Consensus 593 ll~lDyDGTL~~ 604 (673)
+.+||+||||++
T Consensus 1 ~a~FD~DgTL~~ 12 (202)
T TIGR01490 1 LAFFDFDGTLTA 12 (202)
T ss_pred CeEEccCCCCCC
No 302
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=27.65 E-value=1.7e+02 Score=31.03 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcc
Q 005855 620 ELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDL 659 (673)
Q Consensus 620 ~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~ 659 (673)
...+.+.+.+.|+.|.+. .-.++|+||--...++..+..
T Consensus 119 ~l~l~pG~~efl~~L~~~-GIpv~IvS~G~~~~Ie~vL~~ 157 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQH-SIPVFIFSAGIGNVLEEVLRQ 157 (277)
T ss_pred CCccCcCHHHHHHHHHHC-CCcEEEEeCCcHHHHHHHHHH
Confidence 356788999999998764 568999999999888887775
No 303
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.90 E-value=3.1e+02 Score=31.73 Aligned_cols=94 Identities=24% Similarity=0.237 Sum_probs=64.4
Q ss_pred ceEEEeecccccCChHHHHHHHHHHHHh-CcCccC--ceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCccc
Q 005855 364 KVMLGVDRLDMIKGIPQKLLAFEKFLEE-NSDWRG--KVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVP 440 (673)
Q Consensus 364 ~iIl~VgRLd~~KGi~~~L~Af~~ll~~-~P~~~~--~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~p 440 (673)
+=++++.|----|-+-.+|-|+..+... ...-++ ..+|| -.|+| +|..+|.+.+.++....+ ..-
T Consensus 129 rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV--L~PTR-------ELA~QV~~~~~~~~~~~~---~~~ 196 (519)
T KOG0331|consen 129 RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV--LAPTR-------ELAVQVQAEAREFGKSLR---LRS 196 (519)
T ss_pred CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE--EcCcH-------HHHHHHHHHHHHHcCCCC---ccE
Confidence 4578899999999999999999999873 222223 24454 44764 677777777766654433 112
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCCC
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSLR 469 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl~ 469 (673)
+..+.|.--..++..|-+.+||++-|+-|
T Consensus 197 ~cvyGG~~~~~Q~~~l~~gvdiviaTPGR 225 (519)
T KOG0331|consen 197 TCVYGGAPKGPQLRDLERGVDVVIATPGR 225 (519)
T ss_pred EEEeCCCCccHHHHHHhcCCcEEEeCChH
Confidence 33334444467899999999999999854
No 304
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=26.73 E-value=49 Score=31.47 Aligned_cols=71 Identities=27% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCch--hh------cc-C-ceEEE--CCCCHHHHH
Q 005855 451 PALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA--QS------LG-A-GAILV--NPWNITEVA 518 (673)
Q Consensus 451 ~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~--~~------lg-~-~gllV--nP~D~~~lA 518 (673)
+++..+|+.||+++.-+ | +.++.|+++++ .|.|+--..+.. ++ +. . .|+.+ .-.+.+.++
T Consensus 64 ~~m~~~m~~aDlvIs~a---G-~~Ti~E~l~~g----~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~ 135 (167)
T PF04101_consen 64 DNMAELMAAADLVISHA---G-AGTIAEALALG----KPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELA 135 (167)
T ss_dssp SSHHHHHHHHSEEEECS-----CHHHHHHHHCT------EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHH
T ss_pred hhHHHHHHHcCEEEeCC---C-ccHHHHHHHcC----CCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHH
Confidence 35899999999877533 2 36789999995 676665555522 22 21 1 12222 223468899
Q ss_pred HHHHHHhcCCH
Q 005855 519 NAIARALNMSP 529 (673)
Q Consensus 519 ~aI~~aL~m~~ 529 (673)
++|.++++.+.
T Consensus 136 ~~i~~l~~~~~ 146 (167)
T PF04101_consen 136 EAIEELLSDPE 146 (167)
T ss_dssp HHHHCHCCCHH
T ss_pred HHHHHHHcCcH
Confidence 99999998654
No 305
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=26.51 E-value=85 Score=32.73 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCch--hhc--cCceEEECCCCHHHHHHHH
Q 005855 449 DFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAA--QSL--GAGAILVNPWNITEVANAI 521 (673)
Q Consensus 449 ~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~--~~l--g~~gllVnP~D~~~lA~aI 521 (673)
...++.+.|+.|..|++|.-.-....-..|||++| ..|||+++.--.. +.+ ..-++.|+..+..++-+.|
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~G---cIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAG---CIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCcccchHHHHhhhc---eeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 34568899999999999776666889999999996 4677777632211 112 2346777766665554443
No 306
>PLN02670 transferase, transferring glycosyl groups
Probab=25.76 E-value=2.4e+02 Score=32.32 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCC----Cchhhc--cCceEEECC------C
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFA----GAAQSL--GAGAILVNP------W 512 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~a----G~~~~l--g~~gllVnP------~ 512 (673)
.+.+++.++ ++...|..+=+ .-|+| ..+|++++| .|+|+=-.. .-+..+ -.-|+.++. .
T Consensus 344 ~~W~PQ~~I---L~H~~v~~Fvt-HcGwn-S~~Eai~~G----VP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~ 414 (472)
T PLN02670 344 VGWVPQVKI---LSHESVGGFLT-HCGWN-SVVEGLGFG----RVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSF 414 (472)
T ss_pred eCcCCHHHH---hcCcccceeee-cCCcc-hHHHHHHcC----CCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcC
Confidence 467777754 44555532222 35665 568999983 444432211 111111 134666753 4
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHhhHHHhhC-CHHHHHHHHHHHHHHhH
Q 005855 513 NITEVANAIARALNMSP-EEREKRHWHNFTHVTTH-TAQEWAETFVSELNDTV 563 (673)
Q Consensus 513 D~~~lA~aI~~aL~m~~-~er~~r~~~~~~~v~~~-~~~~W~~~fl~~L~~~~ 563 (673)
+.++++++|.+++..++ ++-+++.++..+.+... ....-++.+++.|++..
T Consensus 415 ~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 415 TSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred cHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 68999999999997542 24455555555555443 34566666666666543
No 307
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=25.69 E-value=8.6e+02 Score=26.14 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=21.8
Q ss_pred CCCEEEEeCccchhHHHHHHhhCCC-CeEEe
Q 005855 231 DGDVVWCHDYHLMFLPKCLKEYNSD-MKVGW 260 (673)
Q Consensus 231 ~~DvVwvHDyhl~llp~~Lr~~~~~-~~Ig~ 260 (673)
..|+|..-.-+.......+|+.... .+.++
T Consensus 57 ~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~ 87 (311)
T PF06258_consen 57 WPDLIISAGRRTAPAALALRRASGGRTKTVQ 87 (311)
T ss_pred CCcEEEECCCchHHHHHHHHHHcCCCceEEE
Confidence 3588888777888888888887765 34443
No 308
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=25.14 E-value=1.2e+02 Score=35.25 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=50.0
Q ss_pred HHhhccCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhccccc
Q 005855 585 RYLRSNNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVLF 662 (673)
Q Consensus 585 ~y~~s~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~~ 662 (673)
.+.+...+.+++..||++..... ....+.+++.+.|+.|.+...-.++|+||......+........
T Consensus 358 ~~~~~g~~~~~v~~~~~~~g~i~-----------~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 358 EGESQGKTVVFVAVDGELLGVIA-----------LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred HHhhCCcEEEEEEECCEEEEEEE-----------ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 44555678899999998876532 23457789999999997742268999999999888877766543
No 309
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=24.79 E-value=8.3e+02 Score=26.23 Aligned_cols=262 Identities=16% Similarity=0.146 Sum_probs=123.6
Q ss_pred HHHHHhcCCCCEEEEeCccchhH--------HHHHHhhCCCCeEEeEeccCCCchhhhhcCCcchHHHHhhhcCCEEEEe
Q 005855 223 DVVNKHYKDGDVVWCHDYHLMFL--------PKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFH 294 (673)
Q Consensus 223 ~~i~~~~~~~DvVwvHDyhl~ll--------p~~Lr~~~~~~~Ig~flH~PfP~~e~fr~lp~r~~il~~ll~aDlIgF~ 294 (673)
+.+++.+++-|++.++.|..--+ -++|+..-|..+++.|.|-- +.-..+..|. +...|-.+|.|--|
T Consensus 53 de~v~~vN~yDI~m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh--~~lsI~rn~~---le~~m~~~DvIfsh 127 (355)
T PF11440_consen 53 DETVKKVNDYDIVMFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDH--NKLSIDRNPY---LEGTMNEMDVIFSH 127 (355)
T ss_dssp HHHHHHHTSSSEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE-----SHHHHTTBSS---HHHHHHH-SEEEES
T ss_pred HHHHHHhhccCEEEEecccCchHHHHHHHHHHHHHHhccccceeEEEeecc--ceeecccccc---HHHHHHhhcEEEec
Confidence 66777778889999998876432 34566666788877778842 3333444454 44556679988655
Q ss_pred CHHHHHHHHHHHHHHhccccCCCceeeCCeeeEEEEeecCcChhhhhhhhcCChhHHHHHHHHHHh-c--CCceE---EE
Q 005855 295 TYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF-A--GRKVM---LG 368 (673)
Q Consensus 295 t~~~~~~Fl~~~~r~l~~~~~~~~i~~~gr~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-~--~~~iI---l~ 368 (673)
.. -..|.+.....+-.+ .+....+..++..+-+ |++.. -+...|..| . .++.+ ++
T Consensus 128 s~--~g~f~kv~m~~l~Ps----~~~l~~~i~~~p~v~n------fqpp~-------~i~~~Rstywkd~se~nmnv~~y 188 (355)
T PF11440_consen 128 SD--NGWFSKVLMKELLPS----KVSLFDRIKKFPMVFN------FQPPM-------DINKYRSTYWKDVSEKNMNVNRY 188 (355)
T ss_dssp -T--TSHHHHTHHHHHS-S----S--SSS-------EEE----------B--------HHHHHHHH---GGGSEEEEEEE
T ss_pred cc--cchHHHHHHHhhccc----cCchhhhhhhcceeee------cCCcc-------cHHHHHHHHhhhhHhhhccccee
Confidence 43 356766555322211 1222222222222221 22210 112233333 1 23334 79
Q ss_pred eecccccCChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCC--------CCccc
Q 005855 369 VDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGT--------LTAVP 440 (673)
Q Consensus 369 VgRLd~~KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~--------~~~~p 440 (673)
+||..-.||..+.+.--+++++. |+.. -++-|. .|+ +.+-...+ --..+| -+++ ..-.|
T Consensus 189 igR~Tt~kG~~~mfD~h~~~lK~-~~~~----t~~~Gi-erS--~A~~~i~d----~~~~~~-y~~~~~~~~~~~~pN~~ 255 (355)
T PF11440_consen 189 IGRQTTWKGPRRMFDLHEKILKP-AGFK----TIMEGI-ERS--PAKISIKD----HGIPYE-YYPKLDCDEPKPAPNSP 255 (355)
T ss_dssp E--SSGGG-HHHHHHHHHHTTTT-TT-E----EEEE----SS--THHHHHHH----TT--EE-EE-CTGGGG---SSS--
T ss_pred eeeeeeecCcHHHhhhHHHhcCC-cchh----HHhhhh-hcC--Cceeeeec----CCcccc-cCccccccCcccCCCCc
Confidence 99999999999999999998865 6543 333332 222 22211111 100000 0111 01234
Q ss_pred EEEeCCCCCHHHHHHHHHHcCEEEEcCC------CcCCChhHHHHHhhccCCCceEEEeCCCCch--------hhc--cC
Q 005855 441 IHHLDRSLDFPALCALYAVTDVALVTSL------RDGMNLVSYEFVACQDLKKGVLILSEFAGAA--------QSL--GA 504 (673)
Q Consensus 441 V~~~~~~v~~~el~aly~~ADv~vv~Sl------~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~--------~~l--g~ 504 (673)
+..+ +..=.+|....++.+-...--|- .+.|-.+-+|-.||| ..+|-=...|-. +.. ..
T Consensus 256 ~~v~-~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~G----tIPVF~k~~GEN~r~~~D~~~~~~~~~ 330 (355)
T PF11440_consen 256 VPVY-GPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVG----TIPVFDKSWGENNRFTLDGTRYIDHPY 330 (355)
T ss_dssp EEEE-SS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCT----SEEEEEHHHHHHSB-TTTSSBGGSS--
T ss_pred ceec-chhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeec----eeeeeeccccccceeeecCceeeccCc
Confidence 5544 44445677777776655543332 255888999999996 444443222211 111 24
Q ss_pred ceEEECCCCHHHHHHHHHHHhc
Q 005855 505 GAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 505 ~gllVnP~D~~~lA~aI~~aL~ 526 (673)
+++.++-.|.++..+.|.++-+
T Consensus 331 ~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 331 SAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp S-EEE-TTSHHHHHHHHHHHHT
T ss_pred ceeEeccchHHHHHHHHHHHhc
Confidence 6899999999999999887754
No 310
>PRK12704 phosphodiesterase; Provisional
Probab=24.77 E-value=2.7e+02 Score=32.35 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=45.8
Q ss_pred CcCCChhHHHHHhhc-----cCCCceEEEeCCCCchhhc-------c-CceEEECCCCHHHHHHHHHHHhc
Q 005855 469 RDGMNLVSYEFVACQ-----DLKKGVLILSEFAGAAQSL-------G-AGAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 469 ~EGf~Lv~lEamA~~-----~~~~g~lVlSe~aG~~~~l-------g-~~gllVnP~D~~~lA~aI~~aL~ 526 (673)
+||-|+-++|.. +| .+.|.++++|.|.....++ + .+| .+.|+.++++......-++
T Consensus 228 reGrnir~~e~~-tgvd~iiddtp~~v~ls~~~~~rre~a~~~l~~l~~dg-~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 228 REGRNIRALETL-TGVDLIIDDTPEAVILSGFDPIRREIARLALEKLVQDG-RIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CCcchHHHHHHH-hCCeEEEcCCCCeEEEecCChhhHHHHHHHHHHHHhcC-CcCCCCHHHHHHHHHHHHH
Confidence 799999999974 67 5678999999999888554 1 234 5899999999999988775
No 311
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.73 E-value=2.7e+02 Score=23.67 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHc--CEEEEcCC-CcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-----cCceEEECCCCHHHHHHH
Q 005855 449 DFPALCALYAVT--DVALVTSL-RDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVANA 520 (673)
Q Consensus 449 ~~~el~aly~~A--Dv~vv~Sl-~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-----g~~gllVnP~D~~~lA~a 520 (673)
+.++....+... |++++--. -++=++-.++.+.........+++|......... |..+++..|.+.+++.++
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 110 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAA 110 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHH
T ss_pred CHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHh
Confidence 445555555443 55555533 3344455566664433334556677655533322 678999999999999988
Q ss_pred HH
Q 005855 521 IA 522 (673)
Q Consensus 521 I~ 522 (673)
|+
T Consensus 111 i~ 112 (112)
T PF00072_consen 111 IN 112 (112)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 312
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=24.62 E-value=6e+02 Score=26.19 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=56.8
Q ss_pred cCCceEEEeeccccc-------CChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhcccc
Q 005855 361 AGRKVMLGVDRLDMI-------KGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRF 433 (673)
Q Consensus 361 ~~~~iIl~VgRLd~~-------KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~ 433 (673)
.++++|+....+..- ......++.++.+.+.+|+++ |++---|.......+ ..+.++..
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~----lvvK~HP~~~~~~~~----~~~~~~~~------ 180 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAK----LVVKPHPDERGGNKY----SYLEELPN------ 180 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCE----EEEEECchhhCCCCh----hHhhhhhc------
Confidence 356777777666544 245567778888888888764 544333321111111 11111111
Q ss_pred CCCCcccEEEeCCCCCHHHHHHHHHHcCEEE-EcCCCcCCChhHHHHHhhccCCCceEEE
Q 005855 434 GTLTAVPIHHLDRSLDFPALCALYAVTDVAL-VTSLRDGMNLVSYEFVACQDLKKGVLIL 492 (673)
Q Consensus 434 g~~~~~pV~~~~~~v~~~el~aly~~ADv~v-v~Sl~EGf~Lv~lEamA~~~~~~g~lVl 492 (673)
...++++.... .+..|+..||..+ ++| .|.+||+..+ .|+|+
T Consensus 181 ----~~~~~~~~~~~---~~~~Ll~~s~~VvtinS------tvGlEAll~g----kpVi~ 223 (269)
T PF05159_consen 181 ----LPNVVIIDDDV---NLYELLEQSDAVVTINS------TVGLEALLHG----KPVIV 223 (269)
T ss_pred ----CCCeEEECCCC---CHHHHHHhCCEEEEECC------HHHHHHHHcC----CceEE
Confidence 11344444443 4567888999665 555 6889999985 56665
No 313
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=24.39 E-value=33 Score=32.67 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.3
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHh
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNV 652 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~ 652 (673)
..+.+.+.+.|+.|.+. ...++|+|+.....
T Consensus 84 ~~~~~g~~~~l~~l~~~-g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 84 LKPLPGVEPLLEALRAR-GKKLALLTNSPRDH 114 (183)
T ss_pred CccCcCHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 35678999999999764 56899999988765
No 314
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=23.89 E-value=43 Score=33.32 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.3
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHH
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKV 656 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~ 656 (673)
.++.+++++.|+.|... -.++|+|.-.....++.
T Consensus 98 ~~~~~~~~~~L~~l~~~--~~l~ilTNg~~~~~~~~ 131 (229)
T COG1011 98 LPDYPEALEALKELGKK--YKLGILTNGARPHQERK 131 (229)
T ss_pred CccChhHHHHHHHHHhh--ccEEEEeCCChHHHHHH
Confidence 46788888999988875 67899998544333333
No 315
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=23.62 E-value=73 Score=29.54 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=32.7
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHhcccc
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVLDLVL 661 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~~~~~ 661 (673)
..|.+++.+.|+.|.+. ...++|+|+.+...++..+....
T Consensus 76 ~~~~~~~~~~L~~l~~~-~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 76 LQPYPGVRELLERLKAK-GIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp EEESTTHHHHHHHHHHT-TSEEEEEESSEHHHHHHHHHHTT
T ss_pred cchhhhhhhhhhhcccc-cceeEEeecCCcccccccccccc
Confidence 45567999999999754 78999999999998877776654
No 316
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.60 E-value=2.1e+02 Score=29.28 Aligned_cols=28 Identities=4% Similarity=0.207 Sum_probs=22.0
Q ss_pred chHHHHHHHhhccCeEEEEcccccccCC
Q 005855 578 READSIERYLRSNNRLLILGFNATLTEP 605 (673)
Q Consensus 578 ~~~~~~~~y~~s~~rll~lDyDGTL~~~ 605 (673)
+..++.+.|...-+.+++.|.|||+...
T Consensus 31 dp~~~a~~~~~~~~~l~ivDldga~~g~ 58 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGK 58 (228)
T ss_pred CHHHHHHHHHHhCCEEEEEECcchhcCC
Confidence 5667777777656789999999999764
No 317
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=23.56 E-value=37 Score=31.59 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.8
Q ss_pred EEEcccccccCC
Q 005855 594 LILGFNATLTEP 605 (673)
Q Consensus 594 l~lDyDGTL~~~ 605 (673)
++||+||||...
T Consensus 1 iifD~dgtL~d~ 12 (176)
T PF13419_consen 1 IIFDLDGTLVDT 12 (176)
T ss_dssp EEEESBTTTEEH
T ss_pred cEEECCCCcEeC
Confidence 578999999864
No 318
>PLN02940 riboflavin kinase
Probab=23.47 E-value=41 Score=37.26 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
++++||+||||+.
T Consensus 12 k~VIFDlDGTLvD 24 (382)
T PLN02940 12 SHVILDLDGTLLN 24 (382)
T ss_pred CEEEECCcCcCCc
No 319
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=22.97 E-value=4.6e+02 Score=26.28 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCChhHHHHHhhccCCCceEEEeCCCCch---hh---ccCceEEECCCCHHHHHHHHHHHhc
Q 005855 471 GMNLVSYEFVACQDLKKGVLILSEFAGAA---QS---LGAGAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 471 Gf~Lv~lEamA~~~~~~g~lVlSe~aG~~---~~---lg~~gllVnP~D~~~lA~aI~~aL~ 526 (673)
.=|+-.++.+..+...-.++|+|...-.. .. .|..|++--|.+.+++.++|..++.
T Consensus 53 ~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 53 REGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 34566666665432233456676543221 11 2567899999999999999999986
No 320
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=22.82 E-value=1.2e+03 Score=26.82 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=47.8
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc-------c-CceEEECC--CC
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-------G-AGAILVNP--WN 513 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l-------g-~~gllVnP--~D 513 (673)
+.+.+++.++.+- ..+++||- .-|+ .+..||+.+| .|+|+--..+ ++. . ..|+.+++ .+
T Consensus 350 i~~w~Pq~~lL~h-p~v~~fIt---HGG~-~s~~Eal~~G----vP~v~iP~~~--DQ~~Na~rv~~~G~G~~l~~~~~t 418 (507)
T PHA03392 350 TQKWFPQRAVLKH-KNVKAFVT---QGGV-QSTDEAIDAL----VPMVGLPMMG--DQFYNTNKYVELGIGRALDTVTVS 418 (507)
T ss_pred EecCCCHHHHhcC-CCCCEEEe---cCCc-ccHHHHHHcC----CCEEECCCCc--cHHHHHHHHHHcCcEEEeccCCcC
Confidence 4577887754432 55788773 3454 5678999994 6655543332 222 1 23677765 47
Q ss_pred HHHHHHHHHHHhcCC
Q 005855 514 ITEVANAIARALNMS 528 (673)
Q Consensus 514 ~~~lA~aI~~aL~m~ 528 (673)
.+++++||.++|+.+
T Consensus 419 ~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 419 AAQLVLAIVDVIENP 433 (507)
T ss_pred HHHHHHHHHHHhCCH
Confidence 799999999999864
No 321
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=22.80 E-value=5.3e+02 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.545 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhcCCCCeEEEEcCC
Q 005855 625 PDLKQPLNALCHDPKTTIVVLSGS 648 (673)
Q Consensus 625 ~~~~~~L~~L~~d~~n~V~ViSGR 648 (673)
..+.+.+..+ |+.+.|.|++|-
T Consensus 177 ~~i~~~~~~~--~~~~~v~IvtGF 198 (304)
T cd04248 177 ERISEAFRDI--DPRDELPIVTGY 198 (304)
T ss_pred HHHHHHHHhh--ccCCcEEEeCCc
Confidence 4556666654 446789999996
No 322
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.76 E-value=6.7e+02 Score=25.77 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=51.0
Q ss_pred CCceEEEeecccccCChH--HHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcc
Q 005855 362 GRKVMLGVDRLDMIKGIP--QKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAV 439 (673)
Q Consensus 362 ~~~iIl~VgRLd~~KGi~--~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~ 439 (673)
++.+++..|--.+.|..+ ...+..+.+.++ ++ .++++|+|. + ++.++++...++ . .
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~----~ivl~g~~~-----e----~~~~~~i~~~~~----~---~ 178 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLAR--GA----RVVLTGGPA-----E----RELAEEIAAALG----G---P 178 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHC--CC----EEEEEechh-----h----HHHHHHHHHhcC----C---C
Confidence 344566666555556554 444555544433 33 355566432 1 112233332221 0 1
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhh
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVAC 482 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~ 482 (673)
++..+.+..+-.|+.++++.||+++-+-. |.+-+. .|.
T Consensus 179 ~~~~~~~~~~l~e~~~li~~~~l~I~~Ds----g~~HlA-~a~ 216 (279)
T cd03789 179 RVVNLAGKTSLRELAALLARADLVVTNDS----GPMHLA-AAL 216 (279)
T ss_pred ccccCcCCCCHHHHHHHHHhCCEEEeeCC----HHHHHH-HHc
Confidence 23345677789999999999999998743 444444 455
No 323
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=22.76 E-value=44 Score=33.27 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.2
Q ss_pred cCeEEEEcccccccCC
Q 005855 590 NNRLLILGFNATLTEP 605 (673)
Q Consensus 590 ~~rll~lDyDGTL~~~ 605 (673)
++-++|.|||||++-.
T Consensus 2 kk~vi~sDFDGTITl~ 17 (220)
T COG4359 2 KKPVIFSDFDGTITLN 17 (220)
T ss_pred CceEEEecCCCceEec
Confidence 4678999999999853
No 324
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.63 E-value=42 Score=34.02 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=27.1
Q ss_pred cCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHHHh
Q 005855 621 LKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKVL 657 (673)
Q Consensus 621 ~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~~~ 657 (673)
.+..+...++++.|.+. ..+|+||||--....+...
T Consensus 76 ~~l~~ga~elv~~lk~~-G~~v~iiSgg~~~lv~~ia 111 (212)
T COG0560 76 LRLTPGAEELVAALKAA-GAKVVIISGGFTFLVEPIA 111 (212)
T ss_pred CcCCccHHHHHHHHHHC-CCEEEEEcCChHHHHHHHH
Confidence 46678888888888875 5789999998775444433
No 325
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.10 E-value=6e+02 Score=23.04 Aligned_cols=75 Identities=21% Similarity=0.097 Sum_probs=51.9
Q ss_pred cEEEeCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhc----cCceEEE---CCC
Q 005855 440 PIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL----GAGAILV---NPW 512 (673)
Q Consensus 440 pV~~~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~l----g~~gllV---nP~ 512 (673)
.+.+.. ..+.+++.+....+|+++..+.. .++--.++.+- +..+|.+-.+|.-..- ...|+.| +..
T Consensus 20 ~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~~-----~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~ 92 (133)
T PF00389_consen 20 EVEFCD-SPSEEELAERLKDADAIIVGSGT-PLTAEVLEAAP-----NLKLISTAGAGVDNIDLEAAKERGIPVTNVPGY 92 (133)
T ss_dssp EEEEES-SSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHHT-----T-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTT
T ss_pred eEEEeC-CCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhccc-----eeEEEEEcccccCcccHHHHhhCeEEEEEeCCc
Confidence 355544 78899999999999999986654 56666677663 3678888888875321 3455554 446
Q ss_pred CHHHHHHHH
Q 005855 513 NITEVANAI 521 (673)
Q Consensus 513 D~~~lA~aI 521 (673)
..+++|+-.
T Consensus 93 ~~~aVAE~a 101 (133)
T PF00389_consen 93 NAEAVAEHA 101 (133)
T ss_dssp THHHHHHHH
T ss_pred CCcchhccc
Confidence 777888766
No 326
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=22.03 E-value=42 Score=37.27 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred eEEEEcccccccC
Q 005855 592 RLLILGFNATLTE 604 (673)
Q Consensus 592 rll~lDyDGTL~~ 604 (673)
+.++||+||||+.
T Consensus 132 ~~VIFDlDGTLID 144 (381)
T PLN02575 132 LGAIFEWEGVIIE 144 (381)
T ss_pred CEEEEcCcCccee
No 327
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.02 E-value=2.5e+02 Score=32.22 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred chHHHHHHHhhccCeEEEEcccccccCCC-CCCCCCCcccc-ccccCCChhHHHHHHHHhcCCCCeEEEEcCCCHHhHHH
Q 005855 578 READSIERYLRSNNRLLILGFNATLTEPV-DTPGRRGDQIR-EMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDK 655 (673)
Q Consensus 578 ~~~~~~~~y~~s~~rll~lDyDGTL~~~~-~~p~~~~~~~~-~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~~~~L~~ 655 (673)
.+..++.+-.....+.+.||.|+||..-+ ...|.-+=++. ...-.+..+..+.+..|-.. ..-.+|-|=-+-.+.++
T Consensus 209 ei~Sl~~A~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kq-GVlLav~SKN~~~da~e 287 (574)
T COG3882 209 EIASLLAAMSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQ-GVLLAVCSKNTEKDAKE 287 (574)
T ss_pred HHHHHHHHhhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhc-cEEEEEecCCchhhHHH
Confidence 44556667777778999999999999643 22222111111 11224456677777777653 45566888888889999
Q ss_pred Hhccccccee
Q 005855 656 VLDLVLFIFF 665 (673)
Q Consensus 656 ~~~~~~~~~~ 665 (673)
.|...|..+|
T Consensus 288 vF~khp~MiL 297 (574)
T COG3882 288 VFRKHPDMIL 297 (574)
T ss_pred HHhhCCCeEe
Confidence 9988887655
No 328
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.74 E-value=1e+03 Score=26.19 Aligned_cols=65 Identities=23% Similarity=0.178 Sum_probs=46.3
Q ss_pred eCCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEeCCCCchhhccCceEEECCCCHHHHHHHHHH
Q 005855 444 LDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIAR 523 (673)
Q Consensus 444 ~~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlSe~aG~~~~lg~~gllVnP~D~~~lA~aI~~ 523 (673)
++...+.+++..+-..+|++-++| ++=.|...+++++.. +.|++++..-. .+++++-.|+..
T Consensus 169 ~tev~d~~~v~~~~~~~d~lqIga-~~~~n~~LL~~va~t---~kPVllk~G~~--------------~t~ee~~~A~e~ 230 (352)
T PRK13396 169 ITEVMDAADLEKIAEVADVIQVGA-RNMQNFSLLKKVGAQ---DKPVLLKRGMA--------------ATIDEWLMAAEY 230 (352)
T ss_pred EEeeCCHHHHHHHHhhCCeEEECc-ccccCHHHHHHHHcc---CCeEEEeCCCC--------------CCHHHHHHHHHH
Confidence 455667777777777799999998 477788889999863 57899887332 145666666666
Q ss_pred Hhc
Q 005855 524 ALN 526 (673)
Q Consensus 524 aL~ 526 (673)
++.
T Consensus 231 i~~ 233 (352)
T PRK13396 231 ILA 233 (352)
T ss_pred HHH
Confidence 653
No 329
>PLN02167 UDP-glycosyltransferase family protein
Probab=21.40 E-value=3.9e+02 Score=30.47 Aligned_cols=74 Identities=14% Similarity=-0.025 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe-----CCCCc---hhhccCceEEECC-----
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS-----EFAGA---AQSLGAGAILVNP----- 511 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS-----e~aG~---~~~lg~~gllVnP----- 511 (673)
.+.+++.++.+. .+.++||- .-|+| ..+|++++| .|+|+= .+..+ .+.+ .-|+.++.
T Consensus 345 ~~w~PQ~~iL~h-~~vg~fvt---H~G~n-S~~Eal~~G----vP~l~~P~~~DQ~~na~~~~~~~-g~g~~~~~~~~~~ 414 (475)
T PLN02167 345 CGWAPQVEILAH-KAIGGFVS---HCGWN-SVLESLWFG----VPIATWPMYAEQQLNAFTMVKEL-GLAVELRLDYVSA 414 (475)
T ss_pred eccCCHHHHhcC-cccCeEEe---eCCcc-cHHHHHHcC----CCEEeccccccchhhHHHHHHHh-CeeEEeecccccc
Confidence 366777764432 22344542 46777 668999994 444432 12222 1223 33666642
Q ss_pred ----CCHHHHHHHHHHHhcCC
Q 005855 512 ----WNITEVANAIARALNMS 528 (673)
Q Consensus 512 ----~D~~~lA~aI~~aL~m~ 528 (673)
.+.++++++|.+++..+
T Consensus 415 ~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 415 YGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred cCCcccHHHHHHHHHHHhcCC
Confidence 36889999999999754
No 330
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=20.64 E-value=1.5e+02 Score=30.56 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHhhc-----cCeEEEEcccccccCCCCCCCCCCccccccccCCChhHHHHHHHHhcCCCCeEEEEcCCC
Q 005855 575 PSLREADSIERYLRS-----NNRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSD 649 (673)
Q Consensus 575 ~~L~~~~~~~~y~~s-----~~rll~lDyDGTL~~~~~~p~~~~~~~~~~~~~p~~~~~~~L~~L~~d~~n~V~ViSGR~ 649 (673)
+.++++++.+..... +-.++|+||=+-|.+..... ....--..+...|+.||..-+..|+++|--+
T Consensus 110 ~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~---------~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQln 180 (259)
T PF03796_consen 110 PSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSD---------NRRQEIGEISRELKALAKELNIPVIALSQLN 180 (259)
T ss_dssp SS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSS---------CCHHHHHHHHHHHHHHHHHHTSEEEEEEEBS
T ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCC---------CHHHHHHHHHHHHHHHHHHcCCeEEEccccC
Confidence 445666665544332 23589999998887643111 0111124667789999998888899988766
Q ss_pred HH
Q 005855 650 RN 651 (673)
Q Consensus 650 ~~ 651 (673)
++
T Consensus 181 r~ 182 (259)
T PF03796_consen 181 RE 182 (259)
T ss_dssp GG
T ss_pred hh
Confidence 64
No 331
>PLN03007 UDP-glucosyltransferase family protein
Probab=20.39 E-value=4.6e+02 Score=29.91 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEEe-----CCCCch---hhccCceEEEC------
Q 005855 445 DRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILS-----EFAGAA---QSLGAGAILVN------ 510 (673)
Q Consensus 445 ~~~v~~~el~aly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVlS-----e~aG~~---~~lg~~gllVn------ 510 (673)
.+.+++.+ ++..++|.++=+ .-|+| ..+|++++| .|+|+- .+..+. +.+ .-|+-+.
T Consensus 350 ~~w~PQ~~---iL~h~~v~~fvt-H~G~n-S~~Eal~~G----VP~v~~P~~~DQ~~na~~~~~~~-~~G~~~~~~~~~~ 419 (482)
T PLN03007 350 RGWAPQVL---ILDHQATGGFVT-HCGWN-SLLEGVAAG----LPMVTWPVGAEQFYNEKLVTQVL-RTGVSVGAKKLVK 419 (482)
T ss_pred ecCCCHHH---HhccCccceeee-cCcch-HHHHHHHcC----CCeeeccchhhhhhhHHHHHHhh-cceeEeccccccc
Confidence 46777764 556666533222 46776 678999984 444432 222222 222 2233331
Q ss_pred ----CCCHHHHHHHHHHHhcCC
Q 005855 511 ----PWNITEVANAIARALNMS 528 (673)
Q Consensus 511 ----P~D~~~lA~aI~~aL~m~ 528 (673)
-.+.++++++|.+++..+
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 137889999999999764
No 332
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.29 E-value=8.7e+02 Score=29.04 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHhCcCccCceEEEEEEcCCCCChHHHHHHHHHHHHHHHhhccccCCCCcccEEEeCCCCCHHHHHH
Q 005855 376 KGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCA 455 (673)
Q Consensus 376 KGi~~~L~Af~~ll~~~P~~~~~v~Lvqvg~psr~~~~ey~~l~~~l~~lv~~IN~~~g~~~~~pV~~~~~~v~~~el~a 455 (673)
|=-+..|+.+.++|++-|+-+ |+...-|.-++ +..+..++++ |... ..|+| ..-...+|-..
T Consensus 770 KidP~~l~~W~~ILk~VPnS~----LwllrfPa~ge----~rf~ty~~~~--------Gl~p-~riif-s~va~k~eHvr 831 (966)
T KOG4626|consen 770 KIDPSTLQMWANILKRVPNSV----LWLLRFPAVGE----QRFRTYAEQL--------GLEP-DRIIF-SPVAAKEEHVR 831 (966)
T ss_pred cCCHHHHHHHHHHHHhCCcce----eEEEeccccch----HHHHHHHHHh--------CCCc-cceee-ccccchHHHHH
Confidence 334678899999999999754 66666665433 2333333333 3211 23443 33345577788
Q ss_pred HHHHcCEEEEcCCCcCCChhHHHHHhhccCCCceEEE-------eCCCCchhhc--cCceEEECCCCHHHHHHHHHHHhc
Q 005855 456 LYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLIL-------SEFAGAAQSL--GAGAILVNPWNITEVANAIARALN 526 (673)
Q Consensus 456 ly~~ADv~vv~Sl~EGf~Lv~lEamA~~~~~~g~lVl-------Se~aG~~~~l--g~~gllVnP~D~~~lA~aI~~aL~ 526 (673)
-+..|||++-|++.-|-- +-.|-+.+| .|+|. |.+++ +... |-+-+++ .+.++..+.-.++-+
T Consensus 832 r~~LaDv~LDTplcnGhT-Tg~dvLw~G----vPmVTmpge~lAsrVa~-Sll~~~Gl~hlia--k~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 832 RGQLADVCLDTPLCNGHT-TGMDVLWAG----VPMVTMPGETLASRVAA-SLLTALGLGHLIA--KNREEYVQIAVRLAT 903 (966)
T ss_pred hhhhhhhcccCcCcCCcc-cchhhhccC----CceeecccHHHHHHHHH-HHHHHcccHHHHh--hhHHHHHHHHHHhhc
Confidence 899999999999987753 234444442 33322 22221 1111 3222333 345555554444433
Q ss_pred CCHHHHHHHHHHhhHHHh--hCCHHHHHHHHHHHHHHhHHH
Q 005855 527 MSPEEREKRHWHNFTHVT--THTAQEWAETFVSELNDTVVE 565 (673)
Q Consensus 527 m~~~er~~r~~~~~~~v~--~~~~~~W~~~fl~~L~~~~~~ 565 (673)
+-+..++.|++-...++. -++...|+....+...+.++.
T Consensus 904 d~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 904 DKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred CHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 333333333332222222 257788888776666655543
Done!