Query 005856
Match_columns 673
No_of_seqs 697 out of 3858
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 14:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.8E-72 4E-77 611.9 67.5 607 17-653 48-689 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.4E-72 7.4E-77 609.7 65.4 566 21-618 153-723 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.2E-66 2.6E-71 552.8 67.6 519 21-554 371-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-65 4.8E-70 543.2 68.9 542 54-622 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.6E-61 1.2E-65 509.4 54.6 525 123-672 84-635 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-59 4.7E-64 497.2 53.5 508 54-586 85-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.6E-38 1.2E-42 352.2 79.7 592 28-648 303-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-36 5.4E-41 338.9 79.6 593 31-652 272-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.9E-29 4E-34 281.6 71.0 600 29-648 37-738 (1157)
10 PRK11447 cellulose synthase su 100.0 5.5E-28 1.2E-32 269.9 70.9 573 56-651 28-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.5E-25 1.6E-29 232.9 69.5 582 31-654 55-710 (987)
12 KOG2002 TPR-containing nuclear 100.0 3.6E-24 7.9E-29 212.1 57.0 583 33-625 143-755 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 6.6E-23 1.4E-27 218.2 66.3 602 8-645 65-735 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.7E-22 5.9E-27 188.9 39.8 436 95-554 52-489 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 3.3E-22 7.1E-27 188.3 37.6 445 59-529 51-500 (966)
16 KOG2002 TPR-containing nuclear 99.9 7E-20 1.5E-24 182.1 55.1 561 72-651 146-746 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-19 6.3E-24 187.9 52.6 428 164-616 130-572 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.9E-23 182.9 53.2 450 130-615 131-597 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 188.1 35.1 303 27-338 42-354 (389)
20 KOG2076 RNA polymerase III tra 99.9 1.8E-17 4E-22 164.1 54.8 610 27-644 146-889 (895)
21 PRK15174 Vi polysaccharide exp 99.9 9.2E-19 2E-23 183.0 46.8 361 31-410 16-382 (656)
22 PRK10049 pgaA outer membrane p 99.9 3.8E-18 8.2E-23 182.5 49.2 404 163-616 17-457 (765)
23 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.6E-23 179.1 47.1 334 23-367 45-382 (656)
24 PRK11788 tetratricopeptide rep 99.9 1.5E-19 3.1E-24 180.9 35.4 302 242-553 46-352 (389)
25 PRK10049 pgaA outer membrane p 99.9 6.4E-18 1.4E-22 180.8 48.2 422 54-488 13-464 (765)
26 KOG0495 HAT repeat protein [RN 99.9 9.7E-15 2.1E-19 139.5 61.3 581 35-653 266-883 (913)
27 PRK14574 hmsH outer membrane p 99.9 2E-16 4.4E-21 165.5 52.5 448 61-547 39-512 (822)
28 PRK14574 hmsH outer membrane p 99.9 6E-16 1.3E-20 162.0 54.2 447 29-487 43-520 (822)
29 KOG2076 RNA polymerase III tra 99.8 6.4E-15 1.4E-19 146.4 53.6 584 23-613 176-893 (895)
30 KOG0495 HAT repeat protein [RN 99.8 1.6E-13 3.5E-18 131.3 59.0 496 90-616 379-881 (913)
31 KOG4422 Uncharacterized conser 99.8 1.4E-14 3E-19 131.4 43.0 421 95-547 120-589 (625)
32 KOG1915 Cell cycle control pro 99.8 2.2E-13 4.9E-18 125.3 49.9 438 90-548 72-536 (677)
33 KOG1915 Cell cycle control pro 99.8 2.2E-13 4.7E-18 125.4 48.1 424 33-477 86-535 (677)
34 KOG4422 Uncharacterized conser 99.8 5.1E-14 1.1E-18 127.8 41.3 462 30-540 125-617 (625)
35 KOG2003 TPR repeat-containing 99.8 2.6E-14 5.7E-19 130.6 34.6 460 57-547 202-688 (840)
36 KOG2003 TPR repeat-containing 99.7 2.7E-14 5.8E-19 130.5 33.7 482 20-533 198-708 (840)
37 KOG2047 mRNA splicing factor [ 99.7 8.3E-11 1.8E-15 112.9 51.5 322 278-604 359-712 (835)
38 KOG2047 mRNA splicing factor [ 99.7 5.7E-10 1.2E-14 107.4 55.4 598 29-651 34-724 (835)
39 KOG1173 Anaphase-promoting com 99.7 3.4E-12 7.4E-17 120.7 39.0 495 90-616 15-519 (611)
40 PF13429 TPR_15: Tetratricopep 99.7 7.4E-16 1.6E-20 145.4 13.6 225 384-613 48-275 (280)
41 TIGR00540 hemY_coli hemY prote 99.7 3.5E-13 7.5E-18 133.9 33.0 287 314-613 96-397 (409)
42 KOG0547 Translocase of outer m 99.7 2.5E-12 5.4E-17 119.2 35.5 406 132-580 121-566 (606)
43 KOG1155 Anaphase-promoting com 99.7 7.4E-11 1.6E-15 108.9 43.3 329 194-547 162-494 (559)
44 KOG0547 Translocase of outer m 99.6 2.2E-12 4.8E-17 119.5 33.3 413 165-615 119-566 (606)
45 KOG1155 Anaphase-promoting com 99.6 6.9E-11 1.5E-15 109.1 42.5 384 157-579 160-552 (559)
46 PRK10747 putative protoheme IX 99.6 1.1E-12 2.3E-17 129.6 32.6 281 315-614 97-389 (398)
47 PRK10747 putative protoheme IX 99.6 2.3E-12 5E-17 127.2 34.9 285 68-366 96-390 (398)
48 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.4E-18 133.4 24.4 284 351-655 333-625 (638)
49 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 5.8E-20 141.6 13.3 259 27-292 15-274 (280)
50 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 4.9E-17 128.1 34.0 292 67-367 95-400 (409)
51 KOG3785 Uncharacterized conser 99.6 3.8E-11 8.2E-16 106.8 37.1 250 386-651 291-550 (557)
52 KOG1173 Anaphase-promoting com 99.6 6.3E-11 1.4E-15 112.3 39.7 267 272-554 250-522 (611)
53 KOG1126 DNA-binding cell divis 99.6 2.6E-13 5.7E-18 130.9 23.9 281 317-615 334-620 (638)
54 KOG3785 Uncharacterized conser 99.6 3.4E-11 7.3E-16 107.1 34.8 454 27-523 29-498 (557)
55 COG2956 Predicted N-acetylgluc 99.6 1.1E-11 2.4E-16 108.9 30.8 221 35-259 50-277 (389)
56 COG2956 Predicted N-acetylgluc 99.6 8.6E-12 1.9E-16 109.6 30.0 293 245-547 49-346 (389)
57 KOG1156 N-terminal acetyltrans 99.6 2.6E-09 5.6E-14 103.3 49.0 526 32-616 19-569 (700)
58 KOG4318 Bicoid mRNA stability 99.6 5.2E-11 1.1E-15 118.5 38.3 539 52-651 21-595 (1088)
59 COG3071 HemY Uncharacterized e 99.6 2.7E-11 5.9E-16 110.1 31.9 284 315-614 97-389 (400)
60 KOG1156 N-terminal acetyltrans 99.6 1.1E-09 2.4E-14 105.7 42.9 444 173-641 19-502 (700)
61 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.5E-15 106.1 32.9 288 68-366 96-390 (400)
62 KOG4318 Bicoid mRNA stability 99.5 3E-10 6.4E-15 113.3 36.3 242 18-281 23-286 (1088)
63 KOG4162 Predicted calmodulin-b 99.5 1.4E-09 3.1E-14 107.2 40.5 434 156-616 318-784 (799)
64 KOG1174 Anaphase-promoting com 99.5 2.5E-09 5.4E-14 97.5 38.9 307 262-583 190-503 (564)
65 KOG1127 TPR repeat-containing 99.5 1.2E-09 2.6E-14 110.4 40.5 579 34-636 472-1124(1238)
66 PF12569 NARP1: NMDA receptor- 99.5 1.3E-08 2.9E-13 101.4 43.0 129 235-367 198-335 (517)
67 KOG0985 Vesicle coat protein c 99.4 2.2E-07 4.9E-12 94.5 51.0 82 140-221 657-749 (1666)
68 KOG3617 WD40 and TPR repeat-co 99.4 1.5E-07 3.3E-12 93.6 47.7 355 12-442 713-1108(1416)
69 KOG0985 Vesicle coat protein c 99.4 1.6E-07 3.5E-12 95.5 48.2 548 59-650 609-1308(1666)
70 TIGR02521 type_IV_pilW type IV 99.4 1.3E-10 2.8E-15 107.4 25.8 197 449-649 31-231 (234)
71 KOG4162 Predicted calmodulin-b 99.4 7.1E-09 1.5E-13 102.4 37.2 435 87-547 319-782 (799)
72 KOG1174 Anaphase-promoting com 99.4 2.1E-08 4.4E-13 91.7 37.3 267 333-616 228-501 (564)
73 KOG1129 TPR repeat-containing 99.4 4.4E-11 9.6E-16 105.2 19.4 228 384-616 227-459 (478)
74 PRK12370 invasion protein regu 99.4 2.5E-10 5.5E-15 118.1 28.0 250 71-331 276-535 (553)
75 KOG1129 TPR repeat-containing 99.4 1.1E-10 2.3E-15 102.8 19.6 237 302-553 223-461 (478)
76 PF12569 NARP1: NMDA receptor- 99.4 9E-09 2E-13 102.6 35.7 131 382-513 196-334 (517)
77 KOG2376 Signal recognition par 99.4 5.2E-08 1.1E-12 93.5 38.8 259 386-651 230-521 (652)
78 COG3063 PilF Tfp pilus assembl 99.4 8.8E-10 1.9E-14 92.7 23.8 200 450-653 36-239 (250)
79 KOG1840 Kinesin light chain [C 99.4 3.9E-10 8.5E-15 110.5 24.8 239 413-651 198-480 (508)
80 PRK12370 invasion protein regu 99.4 6.8E-10 1.5E-14 114.9 27.9 216 351-580 318-535 (553)
81 KOG2376 Signal recognition par 99.3 3.2E-07 7E-12 88.2 42.4 454 29-543 21-515 (652)
82 TIGR02521 type_IV_pilW type IV 99.3 1.1E-09 2.4E-14 101.1 25.8 199 267-476 32-230 (234)
83 KOG1127 TPR repeat-containing 99.3 2.2E-07 4.8E-12 94.6 42.5 598 9-628 477-1187(1238)
84 KOG0624 dsRNA-activated protei 99.3 3.7E-08 8E-13 87.8 32.7 310 237-583 44-373 (504)
85 KOG3616 Selective LIM binding 99.3 1.6E-07 3.5E-12 92.2 39.0 217 29-289 715-931 (1636)
86 COG3063 PilF Tfp pilus assembl 99.3 6.8E-09 1.5E-13 87.5 24.2 199 268-477 37-235 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.2 8.1E-09 1.8E-13 97.6 26.3 204 416-626 66-275 (296)
88 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3E-13 96.0 27.6 126 383-511 67-192 (296)
89 KOG4340 Uncharacterized conser 99.2 4.5E-08 9.7E-13 85.6 27.6 355 90-475 9-372 (459)
90 KOG1840 Kinesin light chain [C 99.2 6.9E-09 1.5E-13 102.0 25.6 245 301-546 198-477 (508)
91 KOG0548 Molecular co-chaperone 99.2 1.2E-07 2.6E-12 90.2 31.7 397 204-611 10-485 (539)
92 KOG3616 Selective LIM binding 99.2 2.3E-06 4.9E-11 84.5 40.2 456 29-573 453-930 (1636)
93 PF13041 PPR_2: PPR repeat fam 99.2 1E-10 2.2E-15 76.3 6.6 49 229-277 1-49 (50)
94 KOG0548 Molecular co-chaperone 99.2 3E-08 6.6E-13 94.1 25.5 241 305-563 227-468 (539)
95 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3E-15 75.7 6.5 49 194-242 1-49 (50)
96 KOG3617 WD40 and TPR repeat-co 99.1 1.3E-05 2.8E-10 80.4 45.0 168 64-258 808-994 (1416)
97 KOG4340 Uncharacterized conser 99.1 4.1E-07 9E-12 79.7 28.9 420 164-616 13-444 (459)
98 KOG0624 dsRNA-activated protei 99.1 3E-07 6.6E-12 82.2 27.3 294 27-330 45-369 (504)
99 cd05804 StaR_like StaR_like; a 99.1 7.2E-07 1.6E-11 88.1 33.4 95 416-511 116-213 (355)
100 cd05804 StaR_like StaR_like; a 99.1 1E-06 2.3E-11 86.9 33.5 166 382-547 116-292 (355)
101 PRK04841 transcriptional regul 99.0 4.3E-05 9.3E-10 85.9 48.2 379 166-548 346-760 (903)
102 KOG1914 mRNA cleavage and poly 99.0 2.5E-05 5.4E-10 74.8 37.3 170 396-567 347-526 (656)
103 KOG1125 TPR repeat-containing 99.0 1E-07 2.2E-12 91.4 21.4 256 276-539 295-562 (579)
104 PF04733 Coatomer_E: Coatomer 99.0 3.8E-08 8.3E-13 91.3 17.8 156 388-555 110-270 (290)
105 KOG1125 TPR repeat-containing 99.0 1.4E-07 3.1E-12 90.5 21.7 245 390-640 295-561 (579)
106 KOG2053 Mitochondrial inherita 99.0 7.3E-05 1.6E-09 76.3 46.8 224 32-261 21-256 (932)
107 PRK04841 transcriptional regul 98.9 2.8E-06 6.1E-11 95.4 34.7 337 276-617 384-762 (903)
108 KOG1128 Uncharacterized conser 98.9 2.5E-06 5.5E-11 84.5 27.4 220 334-580 395-616 (777)
109 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 86.6 18.8 81 395-476 182-263 (290)
110 KOG1914 mRNA cleavage and poly 98.9 0.0001 2.2E-09 70.8 39.9 455 158-640 17-529 (656)
111 PLN02789 farnesyltranstransfer 98.8 8.3E-06 1.8E-10 77.0 27.9 203 390-598 47-267 (320)
112 PLN02789 farnesyltranstransfer 98.8 6E-06 1.3E-10 77.9 25.8 208 29-243 46-267 (320)
113 KOG1128 Uncharacterized conser 98.8 7.3E-07 1.6E-11 88.2 19.6 211 384-615 402-616 (777)
114 KOG1070 rRNA processing protei 98.8 4.8E-06 1E-10 88.3 25.9 236 43-284 1447-1689(1710)
115 TIGR03302 OM_YfiO outer membra 98.8 1.3E-06 2.9E-11 80.3 20.1 65 413-477 32-98 (235)
116 KOG1070 rRNA processing protei 98.8 5.2E-06 1.1E-10 88.0 25.7 213 334-553 1455-1668(1710)
117 PRK14720 transcript cleavage f 98.8 9.7E-06 2.1E-10 85.3 27.8 225 265-553 30-255 (906)
118 PRK10370 formate-dependent nit 98.7 2.5E-06 5.5E-11 74.8 19.5 149 456-620 23-178 (198)
119 PRK15179 Vi polysaccharide bio 98.7 2.5E-06 5.4E-11 88.9 22.5 133 480-616 82-218 (694)
120 TIGR03302 OM_YfiO outer membra 98.7 2.6E-06 5.6E-11 78.3 20.5 185 447-649 31-231 (235)
121 PRK15179 Vi polysaccharide bio 98.7 8.4E-06 1.8E-10 85.0 24.4 235 379-637 27-271 (694)
122 COG5010 TadD Flp pilus assembl 98.6 7.7E-06 1.7E-10 71.2 19.3 162 55-221 66-227 (257)
123 KOG2053 Mitochondrial inherita 98.6 0.001 2.2E-08 68.3 50.7 504 19-546 40-606 (932)
124 PRK15359 type III secretion sy 98.6 3.3E-06 7.2E-11 69.9 16.2 105 505-616 14-122 (144)
125 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 2.9E-10 69.7 20.0 127 418-547 70-196 (257)
126 PRK14720 transcript cleavage f 98.6 2.1E-05 4.6E-10 82.8 24.5 245 379-647 30-281 (906)
127 PRK10370 formate-dependent nit 98.5 4.6E-06 9.9E-11 73.2 15.7 119 69-190 52-173 (198)
128 KOG3081 Vesicle coat complex C 98.5 5.5E-05 1.2E-09 65.9 21.5 49 395-443 188-236 (299)
129 KOG3081 Vesicle coat complex C 98.5 0.00015 3.2E-09 63.3 23.6 150 388-547 116-270 (299)
130 KOG3060 Uncharacterized conser 98.5 0.00011 2.4E-09 63.6 22.5 190 351-547 26-219 (289)
131 PRK15359 type III secretion sy 98.5 8.3E-06 1.8E-10 67.5 15.4 93 487-582 27-123 (144)
132 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.6E-12 53.7 3.9 30 227-256 3-32 (34)
133 COG4783 Putative Zn-dependent 98.5 0.00082 1.8E-08 64.3 29.0 113 425-541 317-430 (484)
134 COG4783 Putative Zn-dependent 98.5 0.00017 3.7E-09 68.8 24.4 196 412-630 272-471 (484)
135 PF12854 PPR_1: PPR repeat 98.4 2.9E-07 6.3E-12 53.5 3.8 32 191-222 2-33 (34)
136 KOG3060 Uncharacterized conser 98.4 0.00022 4.7E-09 61.8 22.2 188 244-443 25-220 (289)
137 PF09976 TPR_21: Tetratricopep 98.3 2.1E-05 4.6E-10 65.5 14.4 115 496-612 23-144 (145)
138 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.4E-10 65.0 14.1 110 42-155 5-114 (135)
139 PF09976 TPR_21: Tetratricopep 98.3 2.9E-05 6.3E-10 64.6 14.3 126 451-578 14-145 (145)
140 COG4700 Uncharacterized protei 98.3 0.00021 4.6E-09 58.6 18.1 133 480-614 85-221 (251)
141 TIGR02552 LcrH_SycD type III s 98.3 2.3E-05 4.9E-10 64.7 12.9 107 506-616 5-115 (135)
142 PRK15363 pathogenicity island 98.2 7.7E-05 1.7E-09 60.5 14.1 96 518-616 34-133 (157)
143 KOG0550 Molecular chaperone (D 98.1 0.00019 4.1E-09 66.7 16.6 259 388-651 57-351 (486)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9E-05 2E-09 71.4 14.6 122 486-614 171-296 (395)
145 KOG0550 Molecular chaperone (D 98.1 0.00045 9.8E-09 64.3 18.0 167 389-581 178-351 (486)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00018 3.8E-09 69.5 15.4 124 417-546 172-295 (395)
147 PRK15363 pathogenicity island 98.0 0.00052 1.1E-08 55.8 14.4 94 556-651 40-133 (157)
148 PRK10866 outer membrane biogen 98.0 0.00098 2.1E-08 60.6 17.9 184 448-649 31-240 (243)
149 KOG0553 TPR repeat-containing 98.0 6.3E-05 1.4E-09 67.0 9.7 83 530-615 92-178 (304)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0003 6.4E-09 56.5 12.6 96 521-616 4-106 (119)
151 KOG1130 Predicted G-alpha GTPa 97.9 0.0001 2.2E-09 68.2 10.5 264 388-651 25-345 (639)
152 COG3898 Uncharacterized membra 97.9 0.02 4.4E-07 53.3 29.0 254 349-623 132-400 (531)
153 PF12895 Apc3: Anaphase-promot 97.9 2.3E-05 5E-10 58.0 4.6 78 564-643 2-80 (84)
154 KOG0553 TPR repeat-containing 97.8 0.00026 5.7E-09 63.2 11.4 93 459-555 91-183 (304)
155 TIGR00756 PPR pentatricopeptid 97.8 3.7E-05 8.1E-10 45.5 4.3 33 233-265 2-34 (35)
156 PF12688 TPR_5: Tetratrico pep 97.8 0.00064 1.4E-08 53.3 12.2 91 524-614 6-103 (120)
157 COG3898 Uncharacterized membra 97.8 0.03 6.5E-07 52.2 31.4 289 244-555 97-399 (531)
158 TIGR00756 PPR pentatricopeptid 97.8 5E-05 1.1E-09 45.0 4.5 33 128-160 2-34 (35)
159 PF13812 PPR_3: Pentatricopept 97.8 4.7E-05 1E-09 44.7 4.2 32 233-264 3-34 (34)
160 PF13812 PPR_3: Pentatricopept 97.8 5E-05 1.1E-09 44.6 4.2 32 128-159 3-34 (34)
161 PF12895 Apc3: Anaphase-promot 97.8 6.4E-05 1.4E-09 55.6 5.6 82 33-116 2-83 (84)
162 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0013 2.9E-08 52.6 13.8 58 490-547 45-104 (119)
163 COG4235 Cytochrome c biogenesi 97.7 0.0014 3E-08 59.2 14.6 118 501-620 139-261 (287)
164 PF07079 DUF1347: Protein of u 97.7 0.045 9.7E-07 52.3 42.3 139 29-173 15-179 (549)
165 PF10037 MRP-S27: Mitochondria 97.7 0.00083 1.8E-08 65.2 14.2 119 160-278 65-185 (429)
166 KOG2041 WD40 repeat protein [G 97.7 0.066 1.4E-06 53.9 29.7 204 53-291 689-903 (1189)
167 PLN03088 SGT1, suppressor of 97.7 0.0011 2.5E-08 64.4 14.7 85 494-581 12-100 (356)
168 PF14938 SNAP: Soluble NSF att 97.7 0.0089 1.9E-07 56.3 20.3 91 275-365 123-224 (282)
169 PRK02603 photosystem I assembl 97.7 0.0032 6.8E-08 54.3 15.6 88 451-539 37-126 (172)
170 PF10037 MRP-S27: Mitochondria 97.7 0.00091 2E-08 65.0 13.1 105 382-486 68-175 (429)
171 PLN03088 SGT1, suppressor of 97.6 0.001 2.2E-08 64.8 13.4 91 28-121 10-100 (356)
172 KOG1538 Uncharacterized conser 97.6 0.015 3.4E-07 57.6 20.7 83 486-579 749-845 (1081)
173 cd00189 TPR Tetratricopeptide 97.6 0.00095 2E-08 50.9 10.8 22 97-118 40-61 (100)
174 PRK02603 photosystem I assembl 97.6 0.0025 5.4E-08 54.9 14.1 90 55-145 34-125 (172)
175 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.7E-08 49.5 10.1 76 97-172 31-115 (120)
176 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.5E-08 49.7 9.9 75 204-278 33-116 (120)
177 PF14938 SNAP: Soluble NSF att 97.6 0.0041 9E-08 58.5 16.4 20 456-475 42-61 (282)
178 PRK10153 DNA-binding transcrip 97.6 0.0048 1E-07 62.8 17.8 52 562-615 431-482 (517)
179 COG4700 Uncharacterized protei 97.6 0.022 4.7E-07 47.2 17.8 127 445-575 85-217 (251)
180 PRK10866 outer membrane biogen 97.6 0.035 7.5E-07 50.6 21.6 183 90-292 31-238 (243)
181 KOG2041 WD40 repeat protein [G 97.6 0.11 2.4E-06 52.4 31.1 31 193-223 689-719 (1189)
182 PF14559 TPR_19: Tetratricopep 97.6 0.00043 9.4E-09 48.7 7.3 55 30-86 1-55 (68)
183 KOG1130 Predicted G-alpha GTPa 97.6 0.00043 9.4E-09 64.2 8.9 265 345-614 25-343 (639)
184 cd00189 TPR Tetratricopeptide 97.6 0.0014 3E-08 49.9 10.9 90 386-476 6-95 (100)
185 PF07079 DUF1347: Protein of u 97.5 0.088 1.9E-06 50.4 41.0 275 65-363 15-324 (549)
186 PF13432 TPR_16: Tetratricopep 97.5 0.00046 1E-08 48.0 7.1 59 557-616 3-61 (65)
187 PF05843 Suf: Suppressor of fo 97.5 0.0025 5.5E-08 59.6 13.7 82 176-259 51-135 (280)
188 PF05843 Suf: Suppressor of fo 97.5 0.0017 3.6E-08 60.8 12.2 130 382-513 3-136 (280)
189 PF13432 TPR_16: Tetratricopep 97.5 0.00045 9.7E-09 48.0 6.4 55 492-547 5-59 (65)
190 COG4235 Cytochrome c biogenesi 97.5 0.0061 1.3E-07 55.1 14.8 99 90-190 155-256 (287)
191 COG4105 ComL DNA uptake lipopr 97.5 0.07 1.5E-06 47.4 21.5 179 459-654 44-237 (254)
192 CHL00033 ycf3 photosystem I as 97.5 0.0055 1.2E-07 52.6 14.4 63 451-513 37-101 (168)
193 CHL00033 ycf3 photosystem I as 97.4 0.0024 5.2E-08 54.8 11.6 62 58-119 37-100 (168)
194 PF13414 TPR_11: TPR repeat; P 97.4 0.00063 1.4E-08 48.0 6.7 62 485-547 4-66 (69)
195 PRK10803 tol-pal system protei 97.4 0.0034 7.4E-08 57.5 12.9 84 530-615 154-246 (263)
196 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.13 2.9E-06 49.1 39.3 457 40-553 29-534 (660)
197 PF06239 ECSIT: Evolutionarily 97.4 0.0048 1E-07 52.8 12.3 105 158-281 44-153 (228)
198 PF01535 PPR: PPR repeat; Int 97.4 0.00026 5.7E-09 40.3 3.5 27 234-260 3-29 (31)
199 PF13525 YfiO: Outer membrane 97.4 0.056 1.2E-06 48.0 19.8 172 455-642 11-199 (203)
200 PF14559 TPR_19: Tetratricopep 97.4 0.00071 1.5E-08 47.6 6.4 51 496-547 3-53 (68)
201 PRK10803 tol-pal system protei 97.4 0.0039 8.5E-08 57.2 12.6 98 486-583 145-249 (263)
202 PF06239 ECSIT: Evolutionarily 97.3 0.0078 1.7E-07 51.6 12.8 116 110-246 33-153 (228)
203 PRK10153 DNA-binding transcrip 97.3 0.015 3.3E-07 59.3 17.5 61 485-547 421-481 (517)
204 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.6E-07 45.5 13.9 90 420-511 7-102 (120)
205 PF13414 TPR_11: TPR repeat; P 97.3 0.00074 1.6E-08 47.6 5.9 57 557-614 9-66 (69)
206 PF01535 PPR: PPR repeat; Int 97.3 0.00037 7.9E-09 39.7 3.5 26 129-154 3-28 (31)
207 PRK15331 chaperone protein Sic 97.3 0.015 3.3E-07 47.7 13.6 94 522-616 40-135 (165)
208 PF13525 YfiO: Outer membrane 97.3 0.065 1.4E-06 47.5 19.1 60 96-155 10-71 (203)
209 PRK15331 chaperone protein Sic 97.2 0.0097 2.1E-07 48.8 11.7 102 557-660 43-144 (165)
210 KOG1258 mRNA processing protei 97.2 0.31 6.7E-06 48.8 34.7 174 378-555 295-475 (577)
211 KOG2114 Vacuolar assembly/sort 97.0 0.52 1.1E-05 49.1 26.2 180 22-223 336-517 (933)
212 PF13371 TPR_9: Tetratricopept 97.0 0.0027 5.9E-08 45.3 6.7 58 559-617 3-60 (73)
213 COG1729 Uncharacterized protei 97.0 0.012 2.5E-07 52.7 11.5 88 528-615 150-244 (262)
214 PF13281 DUF4071: Domain of un 96.9 0.19 4.1E-06 48.2 19.4 35 586-621 305-339 (374)
215 PF04840 Vps16_C: Vps16, C-ter 96.9 0.39 8.5E-06 45.6 27.3 108 486-611 179-287 (319)
216 PF04840 Vps16_C: Vps16, C-ter 96.9 0.45 9.7E-06 45.3 32.4 105 452-573 180-284 (319)
217 COG1729 Uncharacterized protei 96.8 0.026 5.6E-07 50.5 12.2 82 563-644 153-238 (262)
218 PF13371 TPR_9: Tetratricopept 96.8 0.0091 2E-07 42.6 7.9 53 494-547 5-57 (73)
219 PRK11906 transcriptional regul 96.8 0.073 1.6E-06 51.8 15.4 78 501-581 321-402 (458)
220 PF08631 SPO22: Meiosis protei 96.7 0.51 1.1E-05 44.3 24.3 96 348-443 46-150 (278)
221 KOG1538 Uncharacterized conser 96.7 0.24 5.3E-06 49.6 18.7 54 381-442 748-801 (1081)
222 PF03704 BTAD: Bacterial trans 96.7 0.15 3.3E-06 42.4 15.6 70 383-452 65-139 (146)
223 COG0457 NrfG FOG: TPR repeat [ 96.7 0.52 1.1E-05 43.2 25.8 220 394-617 37-267 (291)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.029 6.3E-07 54.3 11.7 59 519-579 75-140 (453)
225 PF13424 TPR_12: Tetratricopep 96.6 0.0073 1.6E-07 43.8 6.0 29 586-614 46-74 (78)
226 COG3118 Thioredoxin domain-con 96.6 0.29 6.4E-06 44.4 16.8 121 29-153 143-263 (304)
227 PF13281 DUF4071: Domain of un 96.6 0.6 1.3E-05 44.9 19.8 79 382-460 143-228 (374)
228 KOG4555 TPR repeat-containing 96.5 0.056 1.2E-06 41.9 10.4 94 559-653 51-147 (175)
229 KOG1941 Acetylcholine receptor 96.5 0.39 8.4E-06 44.7 17.3 259 382-640 45-350 (518)
230 KOG2796 Uncharacterized conser 96.5 0.56 1.2E-05 41.7 22.7 137 304-443 179-315 (366)
231 COG4649 Uncharacterized protei 96.5 0.38 8.3E-06 39.7 15.7 134 486-620 61-201 (221)
232 PRK11906 transcriptional regul 96.4 0.23 5.1E-06 48.4 16.4 78 535-615 320-401 (458)
233 KOG2610 Uncharacterized conser 96.4 0.2 4.4E-06 45.9 14.7 113 427-542 116-232 (491)
234 KOG0543 FKBP-type peptidyl-pro 96.3 0.084 1.8E-06 50.0 12.5 96 554-651 260-356 (397)
235 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.3E-07 42.9 5.5 61 486-546 7-73 (78)
236 PF13512 TPR_18: Tetratricopep 96.3 0.11 2.3E-06 41.8 11.3 60 526-585 17-81 (142)
237 KOG1585 Protein required for f 96.3 0.33 7.2E-06 42.5 14.9 203 417-642 34-248 (308)
238 PF10300 DUF3808: Protein of u 96.3 0.26 5.7E-06 50.0 17.0 24 454-477 193-216 (468)
239 KOG1941 Acetylcholine receptor 96.3 0.17 3.6E-06 47.0 13.6 222 392-614 18-274 (518)
240 COG2976 Uncharacterized protei 96.2 0.37 7.9E-06 40.8 14.4 90 525-616 95-189 (207)
241 PF03704 BTAD: Bacterial trans 96.2 0.057 1.2E-06 45.0 10.3 56 96-152 67-122 (146)
242 KOG2114 Vacuolar assembly/sort 96.2 2.1 4.5E-05 44.9 27.0 182 58-258 336-517 (933)
243 COG2976 Uncharacterized protei 96.1 0.25 5.5E-06 41.7 13.0 131 451-583 56-191 (207)
244 KOG1920 IkappaB kinase complex 96.1 2.8 6E-05 46.0 26.0 25 625-649 1188-1212(1265)
245 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.4 3.1E-05 42.5 38.1 436 147-615 30-531 (660)
246 KOG2796 Uncharacterized conser 96.1 0.94 2E-05 40.3 23.4 131 416-547 179-314 (366)
247 PF10300 DUF3808: Protein of u 96.1 0.36 7.9E-06 49.0 16.7 42 399-443 176-217 (468)
248 smart00299 CLH Clathrin heavy 96.0 0.57 1.2E-05 38.6 15.2 49 19-69 6-54 (140)
249 KOG1258 mRNA processing protei 96.0 2 4.4E-05 43.3 39.8 129 163-294 47-179 (577)
250 KOG2280 Vacuolar assembly/sort 96.0 2.4 5.1E-05 43.9 32.9 110 484-609 684-793 (829)
251 PF12921 ATP13: Mitochondrial 96.0 0.14 3.1E-06 40.7 10.7 88 338-425 3-99 (126)
252 PF12921 ATP13: Mitochondrial 95.9 0.12 2.6E-06 41.2 10.0 49 479-527 47-96 (126)
253 KOG1585 Protein required for f 95.9 0.82 1.8E-05 40.2 15.4 25 304-328 93-117 (308)
254 COG3118 Thioredoxin domain-con 95.9 1.3 2.9E-05 40.4 17.4 53 171-224 144-196 (304)
255 COG4649 Uncharacterized protei 95.9 0.53 1.2E-05 38.9 13.4 138 53-191 56-197 (221)
256 PF09205 DUF1955: Domain of un 95.8 0.66 1.4E-05 36.4 13.9 138 460-617 13-151 (161)
257 KOG2610 Uncharacterized conser 95.8 0.44 9.5E-06 43.9 14.0 119 29-150 112-233 (491)
258 COG4105 ComL DNA uptake lipopr 95.8 1.3 2.9E-05 39.6 20.4 173 389-581 43-233 (254)
259 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.11 2.3E-06 50.6 10.6 99 482-581 73-175 (453)
260 PF13431 TPR_17: Tetratricopep 95.7 0.011 2.4E-07 34.2 2.5 33 574-607 2-34 (34)
261 KOG0543 FKBP-type peptidyl-pro 95.7 0.37 8E-06 45.9 13.5 96 345-443 216-320 (397)
262 KOG4234 TPR repeat-containing 95.5 0.17 3.8E-06 42.7 9.6 88 526-616 102-198 (271)
263 PF09205 DUF1955: Domain of un 95.5 0.96 2.1E-05 35.5 13.3 64 382-445 88-151 (161)
264 KOG4234 TPR repeat-containing 95.4 0.24 5.3E-06 41.8 10.0 90 492-583 103-200 (271)
265 KOG4555 TPR repeat-containing 95.3 0.28 6E-06 38.2 9.4 92 64-156 51-145 (175)
266 PF04184 ST7: ST7 protein; In 95.2 0.68 1.5E-05 45.5 13.9 123 489-614 173-323 (539)
267 KOG2280 Vacuolar assembly/sort 95.1 4.9 0.00011 41.8 31.8 108 416-542 686-793 (829)
268 KOG1586 Protein required for f 95.1 2.1 4.5E-05 37.5 18.3 54 562-615 165-224 (288)
269 PF04184 ST7: ST7 protein; In 95.1 1.6 3.5E-05 43.0 16.0 59 131-189 264-323 (539)
270 PF13512 TPR_18: Tetratricopep 95.0 1.2 2.6E-05 36.0 12.6 74 99-172 18-93 (142)
271 PF04053 Coatomer_WDAD: Coatom 94.8 0.66 1.4E-05 46.4 13.3 81 379-473 346-426 (443)
272 KOG3941 Intermediate in Toll s 94.7 0.3 6.5E-06 43.7 9.3 105 158-281 64-173 (406)
273 PF04053 Coatomer_WDAD: Coatom 94.6 1.6 3.5E-05 43.8 15.5 54 301-363 346-399 (443)
274 PF13428 TPR_14: Tetratricopep 94.5 0.11 2.5E-06 32.2 4.8 24 524-547 6-29 (44)
275 COG4785 NlpI Lipoprotein NlpI, 94.5 3 6.5E-05 36.1 15.7 85 393-478 78-162 (297)
276 PF13428 TPR_14: Tetratricopep 94.4 0.11 2.5E-06 32.2 4.7 40 382-421 3-42 (44)
277 PF13176 TPR_7: Tetratricopept 94.3 0.11 2.3E-06 30.6 4.1 26 589-614 2-27 (36)
278 PF08631 SPO22: Meiosis protei 94.3 4.8 0.0001 37.8 25.5 220 391-613 4-273 (278)
279 COG3629 DnrI DNA-binding trans 94.0 0.7 1.5E-05 42.4 10.5 78 127-205 154-236 (280)
280 KOG1920 IkappaB kinase complex 94.0 12 0.00026 41.4 24.0 19 492-510 973-991 (1265)
281 PRK11619 lytic murein transgly 93.9 10 0.00022 40.4 28.7 138 242-398 44-181 (644)
282 COG4785 NlpI Lipoprotein NlpI, 93.9 3.9 8.4E-05 35.5 16.1 162 90-261 98-267 (297)
283 PF02259 FAT: FAT domain; Int 93.8 7.3 0.00016 38.2 22.0 65 448-512 145-212 (352)
284 KOG3941 Intermediate in Toll s 93.8 0.72 1.6E-05 41.5 9.7 106 123-247 64-174 (406)
285 PF07035 Mic1: Colon cancer-as 93.4 4.1 8.9E-05 34.2 14.9 30 115-144 18-47 (167)
286 PRK15180 Vi polysaccharide bio 93.4 8.4 0.00018 37.8 26.3 113 6-121 308-421 (831)
287 smart00299 CLH Clathrin heavy 93.3 3.9 8.4E-05 33.6 16.1 109 489-611 12-121 (140)
288 COG0457 NrfG FOG: TPR repeat [ 93.3 6.2 0.00013 35.8 30.8 200 381-583 60-268 (291)
289 PF10602 RPN7: 26S proteasome 93.1 1.1 2.5E-05 38.4 9.9 95 522-616 39-143 (177)
290 PF13431 TPR_17: Tetratricopep 93.0 0.13 2.9E-06 29.7 2.8 32 43-76 2-33 (34)
291 PRK15180 Vi polysaccharide bio 92.9 10 0.00022 37.3 32.2 100 532-633 711-825 (831)
292 KOG1550 Extracellular protein 92.9 14 0.0003 38.8 24.9 13 602-614 525-537 (552)
293 PF00515 TPR_1: Tetratricopept 92.6 0.33 7.1E-06 27.9 4.3 27 521-547 3-29 (34)
294 PF07719 TPR_2: Tetratricopept 92.6 0.34 7.3E-06 27.8 4.3 30 587-616 2-31 (34)
295 COG3629 DnrI DNA-binding trans 92.4 1.6 3.4E-05 40.2 10.2 77 382-458 155-236 (280)
296 KOG4648 Uncharacterized conser 92.2 0.5 1.1E-05 43.6 6.8 85 560-646 106-190 (536)
297 PF13170 DUF4003: Protein of u 92.0 11 0.00024 35.6 21.9 133 212-346 78-226 (297)
298 COG2909 MalT ATP-dependent tra 92.0 20 0.00044 38.5 28.2 219 422-640 423-678 (894)
299 PF13176 TPR_7: Tetratricopept 91.9 0.39 8.6E-06 28.1 4.0 25 522-546 2-26 (36)
300 TIGR03504 FimV_Cterm FimV C-te 91.9 0.31 6.8E-06 30.0 3.6 27 591-617 4-30 (44)
301 KOG1550 Extracellular protein 91.8 19 0.00041 37.9 26.4 158 348-514 260-427 (552)
302 PF11207 DUF2989: Protein of u 91.6 2.8 6.1E-05 36.1 10.2 72 73-145 123-197 (203)
303 PF00515 TPR_1: Tetratricopept 91.6 0.52 1.1E-05 27.1 4.3 30 587-616 2-31 (34)
304 PF13170 DUF4003: Protein of u 91.6 12 0.00027 35.3 18.0 48 108-155 79-132 (297)
305 PF07035 Mic1: Colon cancer-as 91.5 7.6 0.00017 32.7 16.5 136 217-367 15-150 (167)
306 PF07719 TPR_2: Tetratricopept 91.4 0.5 1.1E-05 27.1 4.1 27 521-547 3-29 (34)
307 PF04097 Nic96: Nup93/Nic96; 91.3 23 0.00049 37.8 22.3 88 343-443 264-356 (613)
308 PF10602 RPN7: 26S proteasome 90.2 5.4 0.00012 34.3 10.9 59 199-257 39-99 (177)
309 PF09613 HrpB1_HrpK: Bacterial 90.1 9.8 0.00021 31.6 13.3 51 392-442 22-72 (160)
310 PF00637 Clathrin: Region in C 89.8 0.02 4.3E-07 47.6 -4.2 92 18-117 5-96 (143)
311 KOG4648 Uncharacterized conser 89.5 2.6 5.6E-05 39.2 8.6 92 420-514 103-195 (536)
312 PF13929 mRNA_stabil: mRNA sta 89.4 14 0.00031 34.0 13.2 168 36-207 112-289 (292)
313 KOG0890 Protein kinase of the 89.3 60 0.0013 39.5 36.8 327 18-368 1381-1733(2382)
314 PF10345 Cohesin_load: Cohesin 89.2 34 0.00074 36.6 42.5 186 36-222 37-251 (608)
315 KOG2034 Vacuolar sorting prote 89.2 35 0.00077 36.7 24.8 171 168-363 365-556 (911)
316 PF10579 Rapsyn_N: Rapsyn N-te 89.0 2.7 5.8E-05 29.7 6.5 48 563-610 18-67 (80)
317 PF13374 TPR_10: Tetratricopep 88.8 1 2.2E-05 27.3 4.2 28 587-614 3-30 (42)
318 PF09613 HrpB1_HrpK: Bacterial 88.7 13 0.00028 31.0 13.8 52 102-155 21-73 (160)
319 PF13181 TPR_8: Tetratricopept 88.4 1.3 2.9E-05 25.2 4.3 28 588-615 3-30 (34)
320 PRK09687 putative lyase; Provi 88.3 23 0.00049 33.3 27.2 121 195-330 141-262 (280)
321 PF00637 Clathrin: Region in C 88.2 0.044 9.6E-07 45.5 -3.1 81 491-575 14-94 (143)
322 PF07721 TPR_4: Tetratricopept 88.2 0.79 1.7E-05 24.4 2.9 22 589-610 4-25 (26)
323 PF09986 DUF2225: Uncharacteri 88.1 13 0.00028 33.2 12.0 53 568-620 142-199 (214)
324 COG1747 Uncharacterized N-term 87.9 31 0.00068 34.5 25.7 178 335-527 64-247 (711)
325 KOG2062 26S proteasome regulat 87.9 39 0.00085 35.6 35.2 121 423-547 510-634 (929)
326 PF13174 TPR_6: Tetratricopept 87.6 1.1 2.5E-05 25.2 3.7 27 589-615 3-29 (33)
327 KOG3364 Membrane protein invol 87.3 4.8 0.0001 32.0 7.6 60 556-615 37-100 (149)
328 COG0790 FOG: TPR repeat, SEL1 87.3 27 0.00059 33.1 20.3 150 426-581 53-221 (292)
329 KOG0276 Vesicle coat complex C 87.2 11 0.00025 38.2 11.9 153 29-222 595-747 (794)
330 KOG4570 Uncharacterized conser 87.0 9.5 0.00021 35.3 10.4 97 90-190 63-164 (418)
331 PF13181 TPR_8: Tetratricopept 86.2 1.3 2.9E-05 25.3 3.4 26 522-547 4-29 (34)
332 PRK10941 hypothetical protein; 85.7 15 0.00034 34.0 11.5 76 556-632 186-262 (269)
333 PF04097 Nic96: Nup93/Nic96; 85.4 56 0.0012 34.9 20.5 88 168-260 265-356 (613)
334 PF14561 TPR_20: Tetratricopep 85.4 11 0.00024 28.0 8.6 76 572-648 9-86 (90)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 85.2 7 0.00015 29.0 7.0 46 73-118 24-69 (103)
336 KOG4642 Chaperone-dependent E3 85.0 17 0.00036 32.4 10.5 85 493-580 19-107 (284)
337 PF13374 TPR_10: Tetratricopep 85.0 2.4 5.3E-05 25.5 4.4 28 520-547 3-30 (42)
338 PF06552 TOM20_plant: Plant sp 84.6 6.3 0.00014 33.3 7.6 43 566-616 95-137 (186)
339 PF13174 TPR_6: Tetratricopept 84.5 1.4 3.1E-05 24.8 3.0 24 524-547 5-28 (33)
340 KOG2066 Vacuolar assembly/sort 84.2 62 0.0013 34.5 25.1 24 200-223 509-532 (846)
341 TIGR02561 HrpB1_HrpK type III 84.2 22 0.00047 29.2 11.9 52 392-443 22-73 (153)
342 PRK11619 lytic murein transgly 84.1 65 0.0014 34.6 40.2 59 304-363 314-372 (644)
343 TIGR02508 type_III_yscG type I 83.6 12 0.00026 27.9 7.7 52 560-617 48-99 (115)
344 PF08424 NRDE-2: NRDE-2, neces 83.5 44 0.00096 32.2 17.2 117 432-550 49-185 (321)
345 COG0790 FOG: TPR repeat, SEL1 83.3 42 0.00091 31.8 21.3 151 392-550 53-222 (292)
346 KOG4570 Uncharacterized conser 83.2 9.5 0.00021 35.3 8.7 99 378-478 62-164 (418)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 11 0.00024 27.9 7.4 45 179-223 25-69 (103)
348 COG1747 Uncharacterized N-term 82.7 57 0.0012 32.9 24.9 60 232-294 67-126 (711)
349 PF02284 COX5A: Cytochrome c o 82.6 18 0.0004 27.2 9.1 46 179-224 28-73 (108)
350 KOG3364 Membrane protein invol 82.6 23 0.0005 28.3 10.2 73 481-555 29-105 (149)
351 KOG4642 Chaperone-dependent E3 82.6 23 0.0005 31.6 10.3 87 458-547 19-106 (284)
352 KOG0890 Protein kinase of the 81.9 1.4E+02 0.003 36.8 34.8 120 236-363 1388-1509(2382)
353 KOG2396 HAT (Half-A-TPR) repea 81.8 61 0.0013 32.6 39.3 81 38-121 89-170 (568)
354 KOG2471 TPR repeat-containing 81.5 61 0.0013 32.4 15.3 105 528-633 249-381 (696)
355 COG5159 RPN6 26S proteasome re 81.5 30 0.00065 31.7 10.9 31 523-553 129-163 (421)
356 TIGR02561 HrpB1_HrpK type III 81.3 28 0.00062 28.5 12.5 52 102-155 21-73 (153)
357 KOG1464 COP9 signalosome, subu 81.0 43 0.00093 30.4 18.5 229 372-600 18-286 (440)
358 COG4455 ImpE Protein of avirul 81.0 12 0.00026 32.8 8.0 77 382-458 3-81 (273)
359 PF10579 Rapsyn_N: Rapsyn N-te 80.9 5.8 0.00013 28.1 5.1 51 596-646 16-68 (80)
360 PF10345 Cohesin_load: Cohesin 80.8 86 0.0019 33.7 41.0 184 74-258 39-252 (608)
361 PF14561 TPR_20: Tetratricopep 80.6 20 0.00043 26.6 8.3 65 41-107 9-74 (90)
362 KOG2062 26S proteasome regulat 80.4 84 0.0018 33.3 43.4 546 35-615 38-635 (929)
363 PF02259 FAT: FAT domain; Int 80.3 61 0.0013 31.7 23.5 65 301-365 145-212 (352)
364 KOG0276 Vesicle coat complex C 80.2 37 0.0008 34.8 12.1 136 19-188 613-748 (794)
365 TIGR03504 FimV_Cterm FimV C-te 79.8 2.6 5.7E-05 26.0 2.9 24 62-85 5-28 (44)
366 PF02284 COX5A: Cytochrome c o 79.3 25 0.00053 26.6 9.1 42 76-117 30-71 (108)
367 PF07163 Pex26: Pex26 protein; 78.9 54 0.0012 30.2 13.8 119 491-609 42-181 (309)
368 KOG4507 Uncharacterized conser 78.8 7.6 0.00017 39.2 7.1 106 545-651 598-706 (886)
369 PF04910 Tcf25: Transcriptiona 78.5 71 0.0015 31.4 14.9 160 408-580 34-222 (360)
370 PF07163 Pex26: Pex26 protein; 78.3 26 0.00056 32.1 9.5 20 29-48 44-63 (309)
371 PF06552 TOM20_plant: Plant sp 78.0 20 0.00043 30.5 8.3 32 36-69 7-38 (186)
372 PF08424 NRDE-2: NRDE-2, neces 77.5 71 0.0015 30.8 16.6 28 200-227 158-185 (321)
373 PF14853 Fis1_TPR_C: Fis1 C-te 77.4 9.5 0.00021 24.8 5.0 27 590-616 5-31 (53)
374 KOG1464 COP9 signalosome, subu 77.3 57 0.0012 29.7 16.9 165 343-511 71-258 (440)
375 PF10366 Vps39_1: Vacuolar sor 77.0 32 0.00069 26.6 9.6 42 564-614 26-67 (108)
376 KOG2471 TPR repeat-containing 76.7 87 0.0019 31.4 16.6 105 390-496 250-381 (696)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 76.5 12 0.00026 30.0 6.6 44 569-612 81-125 (126)
378 smart00028 TPR Tetratricopepti 76.5 5.3 0.00011 21.7 3.7 28 588-615 3-30 (34)
379 PF14853 Fis1_TPR_C: Fis1 C-te 75.7 11 0.00024 24.5 5.0 31 523-555 5-35 (53)
380 PF09670 Cas_Cas02710: CRISPR- 75.0 44 0.00096 33.1 11.5 54 459-513 141-198 (379)
381 KOG2396 HAT (Half-A-TPR) repea 75.0 98 0.0021 31.2 40.7 81 143-225 88-169 (568)
382 PF09986 DUF2225: Uncharacteri 74.5 64 0.0014 28.8 12.6 65 521-585 120-199 (214)
383 KOG4507 Uncharacterized conser 72.7 18 0.00038 36.8 7.8 84 531-617 619-707 (886)
384 KOG2063 Vacuolar assembly/sort 72.3 1.6E+02 0.0035 32.6 26.2 26 340-365 507-532 (877)
385 cd02680 MIT_calpain7_2 MIT: do 72.3 9.1 0.0002 27.0 4.3 34 566-615 2-35 (75)
386 COG4455 ImpE Protein of avirul 71.9 71 0.0015 28.2 14.1 122 452-584 4-138 (273)
387 PF13929 mRNA_stabil: mRNA sta 70.5 93 0.002 29.0 16.7 138 105-242 142-289 (292)
388 PRK09687 putative lyase; Provi 70.3 97 0.0021 29.2 27.8 17 124-140 35-51 (280)
389 TIGR02508 type_III_yscG type I 69.6 46 0.00099 25.1 10.4 92 29-129 12-105 (115)
390 PF13934 ELYS: Nuclear pore co 68.6 91 0.002 28.2 11.9 137 500-646 26-165 (226)
391 PF07575 Nucleopor_Nup85: Nup8 68.2 55 0.0012 34.7 11.1 62 195-258 404-465 (566)
392 smart00777 Mad3_BUB1_I Mad3/BU 67.0 37 0.00081 27.0 7.2 43 568-610 80-123 (125)
393 PF04910 Tcf25: Transcriptiona 66.8 1.4E+02 0.0029 29.5 20.7 47 31-83 21-67 (360)
394 KOG1308 Hsp70-interacting prot 66.8 4 8.6E-05 38.2 2.1 49 33-83 127-175 (377)
395 PF10255 Paf67: RNA polymerase 66.2 28 0.00061 34.3 7.7 29 586-614 164-192 (404)
396 KOG0687 26S proteasome regulat 65.2 1.3E+02 0.0028 28.6 14.5 20 599-618 194-213 (393)
397 PF11207 DUF2989: Protein of u 64.7 98 0.0021 27.1 14.4 78 137-216 118-198 (203)
398 KOG4521 Nuclear pore complex, 62.9 1.5E+02 0.0032 33.5 12.6 119 487-611 986-1127(1480)
399 COG4259 Uncharacterized protei 62.4 62 0.0013 24.2 6.9 60 504-565 57-116 (121)
400 PF13762 MNE1: Mitochondrial s 62.2 88 0.0019 25.7 10.6 79 383-461 42-127 (145)
401 KOG0403 Neoplastic transformat 62.0 1.7E+02 0.0038 29.0 28.7 59 488-549 513-573 (645)
402 KOG1308 Hsp70-interacting prot 61.1 11 0.00024 35.4 3.8 84 497-583 127-214 (377)
403 KOG1586 Protein required for f 60.9 1.3E+02 0.0027 27.1 20.4 22 458-479 163-184 (288)
404 KOG2422 Uncharacterized conser 59.8 2.2E+02 0.0048 29.5 17.5 51 31-81 249-309 (665)
405 PF12862 Apc5: Anaphase-promot 59.8 58 0.0013 24.3 7.0 23 525-547 47-69 (94)
406 PF09477 Type_III_YscG: Bacter 58.9 80 0.0017 24.2 8.7 79 35-121 21-99 (116)
407 PF07720 TPR_3: Tetratricopept 58.2 25 0.00054 20.6 3.7 22 589-610 4-25 (36)
408 KOG4077 Cytochrome c oxidase, 57.9 75 0.0016 25.2 7.0 45 180-224 68-112 (149)
409 KOG0376 Serine-threonine phosp 57.7 33 0.00071 34.2 6.4 88 491-581 11-102 (476)
410 PF09670 Cas_Cas02710: CRISPR- 56.9 1E+02 0.0023 30.5 10.1 57 421-478 138-198 (379)
411 COG3947 Response regulator con 56.3 1.7E+02 0.0038 27.3 17.5 60 451-511 281-340 (361)
412 COG5159 RPN6 26S proteasome re 54.2 1.8E+02 0.004 26.9 16.9 25 342-366 130-154 (421)
413 COG3947 Response regulator con 54.0 1.9E+02 0.0041 27.0 16.0 41 248-290 150-190 (361)
414 COG2909 MalT ATP-dependent tra 53.8 3.4E+02 0.0074 29.9 34.4 230 311-544 424-684 (894)
415 KOG4279 Serine/threonine prote 53.7 3.2E+02 0.0068 29.5 15.7 111 400-513 183-316 (1226)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 53.5 1.2E+02 0.0025 24.4 10.3 42 398-439 81-124 (126)
417 KOG4077 Cytochrome c oxidase, 53.0 1E+02 0.0022 24.5 7.1 39 114-152 72-110 (149)
418 PF11846 DUF3366: Domain of un 52.9 83 0.0018 27.5 8.0 33 515-547 140-172 (193)
419 PF12862 Apc5: Anaphase-promot 52.9 94 0.002 23.2 7.3 59 348-410 9-71 (94)
420 PF11817 Foie-gras_1: Foie gra 52.5 74 0.0016 29.3 7.8 54 589-642 181-239 (247)
421 TIGR02710 CRISPR-associated pr 51.9 2.5E+02 0.0054 27.7 12.0 16 563-578 258-273 (380)
422 KOG3807 Predicted membrane pro 51.7 2.2E+02 0.0047 27.0 11.5 17 173-189 287-303 (556)
423 KOG0292 Vesicle coat complex C 51.6 3.7E+02 0.008 29.7 21.2 55 566-620 1062-1118(1202)
424 TIGR02710 CRISPR-associated pr 51.2 1.7E+02 0.0037 28.8 10.1 52 493-544 139-196 (380)
425 PF03745 DUF309: Domain of unk 50.2 78 0.0017 21.5 5.6 48 136-183 9-61 (62)
426 COG4259 Uncharacterized protei 49.7 57 0.0012 24.4 5.0 42 570-611 56-97 (121)
427 PF14689 SPOB_a: Sensor_kinase 49.6 35 0.00075 23.1 3.9 31 585-615 22-52 (62)
428 KOG0551 Hsp90 co-chaperone CNS 49.5 1E+02 0.0022 29.3 7.8 95 520-615 82-182 (390)
429 PF10516 SHNi-TPR: SHNi-TPR; 49.1 46 0.00099 19.9 3.8 28 587-614 2-29 (38)
430 KOG0376 Serine-threonine phosp 48.4 40 0.00087 33.6 5.5 104 28-136 12-115 (476)
431 PF11846 DUF3366: Domain of un 48.1 68 0.0015 28.1 6.6 33 88-120 141-173 (193)
432 COG0735 Fur Fe2+/Zn2+ uptake r 47.2 93 0.002 25.7 6.8 59 474-533 11-69 (145)
433 PRK10941 hypothetical protein; 47.0 2.5E+02 0.0053 26.3 10.7 60 384-443 185-244 (269)
434 KOG0128 RNA-binding protein SA 46.3 4.3E+02 0.0094 28.9 36.5 199 380-585 312-531 (881)
435 smart00804 TAP_C C-terminal do 45.4 46 0.00099 22.7 3.8 36 21-56 25-61 (63)
436 COG4941 Predicted RNA polymera 45.2 2.9E+02 0.0062 26.5 11.8 114 465-581 272-395 (415)
437 KOG0551 Hsp90 co-chaperone CNS 44.9 81 0.0017 29.9 6.5 89 456-545 88-179 (390)
438 PF14689 SPOB_a: Sensor_kinase 44.7 60 0.0013 22.0 4.4 24 235-258 27-50 (62)
439 PF11663 Toxin_YhaV: Toxin wit 43.9 26 0.00057 28.0 2.9 31 138-170 107-137 (140)
440 smart00386 HAT HAT (Half-A-TPR 43.7 54 0.0012 17.8 4.3 29 34-64 1-29 (33)
441 COG0735 Fur Fe2+/Zn2+ uptake r 42.4 1.3E+02 0.0029 24.8 7.0 58 544-601 11-70 (145)
442 cd08819 CARD_MDA5_2 Caspase ac 42.3 1.4E+02 0.003 22.0 7.1 34 209-247 49-82 (88)
443 KOG4567 GTPase-activating prot 42.1 3.1E+02 0.0066 26.0 9.8 71 434-509 263-343 (370)
444 COG5187 RPN7 26S proteasome re 42.0 2.9E+02 0.0064 25.8 14.3 100 519-618 115-224 (412)
445 KOG0292 Vesicle coat complex C 41.7 1.4E+02 0.0031 32.5 8.4 129 459-614 653-781 (1202)
446 PF04762 IKI3: IKI3 family; I 41.4 6E+02 0.013 29.1 15.6 112 449-575 812-925 (928)
447 PF11848 DUF3368: Domain of un 41.3 92 0.002 19.7 5.1 31 243-273 14-44 (48)
448 cd02678 MIT_VPS4 MIT: domain c 40.8 1.3E+02 0.0028 21.3 6.3 15 599-613 19-33 (75)
449 KOG2063 Vacuolar assembly/sort 40.6 5.7E+02 0.012 28.7 21.1 28 58-85 506-533 (877)
450 KOG2422 Uncharacterized conser 40.5 4.5E+02 0.0097 27.5 19.9 160 392-553 250-451 (665)
451 KOG0545 Aryl-hydrocarbon recep 40.5 2.9E+02 0.0062 25.2 10.8 108 519-627 178-305 (329)
452 KOG0991 Replication factor C, 40.3 2.8E+02 0.0061 25.1 12.9 35 194-229 237-271 (333)
453 PF12968 DUF3856: Domain of Un 40.3 1.8E+02 0.004 22.9 10.3 23 591-613 105-127 (144)
454 PF04190 DUF410: Protein of un 40.2 3.1E+02 0.0067 25.5 17.5 26 412-437 88-113 (260)
455 cd02679 MIT_spastin MIT: domai 39.5 52 0.0011 23.7 3.6 21 632-652 50-70 (79)
456 PRK10564 maltose regulon perip 39.3 62 0.0013 30.3 5.0 30 234-263 260-289 (303)
457 cd00280 TRFH Telomeric Repeat 39.1 2.6E+02 0.0055 24.2 11.0 115 92-211 15-158 (200)
458 COG4976 Predicted methyltransf 37.7 90 0.002 27.9 5.4 55 460-515 6-60 (287)
459 PRK10564 maltose regulon perip 37.7 68 0.0015 30.0 5.0 36 452-487 260-295 (303)
460 KOG3807 Predicted membrane pro 36.5 3.8E+02 0.0083 25.5 10.1 150 26-192 190-342 (556)
461 KOG3677 RNA polymerase I-assoc 36.3 3.8E+02 0.0083 26.6 9.6 28 6-33 171-198 (525)
462 PF14669 Asp_Glu_race_2: Putat 36.1 2.9E+02 0.0064 24.0 14.7 56 488-543 136-205 (233)
463 KOG0530 Protein farnesyltransf 35.7 3.6E+02 0.0078 24.9 21.0 130 391-523 54-185 (318)
464 PF09868 DUF2095: Uncharacteri 35.7 1.6E+02 0.0034 22.8 5.6 40 96-136 66-105 (128)
465 KOG3677 RNA polymerase I-assoc 35.5 3.4E+02 0.0075 26.9 9.1 58 454-511 240-299 (525)
466 PRK11639 zinc uptake transcrip 35.2 1.8E+02 0.0039 24.8 6.9 33 70-102 39-71 (169)
467 KOG2659 LisH motif-containing 34.5 3.4E+02 0.0075 24.4 10.6 99 445-545 22-129 (228)
468 KOG4567 GTPase-activating prot 34.5 2.5E+02 0.0055 26.5 7.8 71 216-291 263-343 (370)
469 PF09454 Vps23_core: Vps23 cor 34.2 1.1E+02 0.0023 21.1 4.3 49 89-138 6-54 (65)
470 PF09454 Vps23_core: Vps23 cor 34.2 1.5E+02 0.0033 20.4 5.0 48 229-277 6-53 (65)
471 PHA02537 M terminase endonucle 33.9 3.6E+02 0.0078 24.4 12.9 23 563-585 190-212 (230)
472 PF11663 Toxin_YhaV: Toxin wit 33.9 48 0.001 26.6 2.9 18 536-553 112-129 (140)
473 PF15297 CKAP2_C: Cytoskeleton 33.8 4.4E+02 0.0095 25.6 9.5 60 536-597 120-186 (353)
474 PRK12798 chemotaxis protein; R 33.6 5E+02 0.011 26.0 21.4 186 427-616 125-325 (421)
475 PRK13184 pknD serine/threonine 33.1 7.8E+02 0.017 28.1 30.2 47 318-366 535-581 (932)
476 PF04190 DUF410: Protein of un 33.0 4.1E+02 0.0088 24.7 18.7 25 518-542 89-113 (260)
477 KOG1839 Uncharacterized protei 32.9 6E+02 0.013 29.6 11.8 153 391-543 943-1123(1236)
478 KOG2297 Predicted translation 32.2 4.4E+02 0.0096 24.9 13.8 184 328-539 157-341 (412)
479 COG4976 Predicted methyltransf 31.7 1.1E+02 0.0023 27.5 4.9 58 493-553 4-61 (287)
480 PHA02875 ankyrin repeat protei 31.5 5.5E+02 0.012 25.8 14.3 234 40-293 15-265 (413)
481 COG5108 RPO41 Mitochondrial DN 31.5 3E+02 0.0065 29.1 8.6 73 384-459 32-113 (1117)
482 PF11817 Foie-gras_1: Foie gra 31.4 2.5E+02 0.0055 25.8 7.8 22 342-363 183-204 (247)
483 PF04212 MIT: MIT (microtubule 31.2 1.3E+02 0.0027 20.8 4.5 14 563-576 17-30 (69)
484 PF05944 Phage_term_smal: Phag 31.2 1.8E+02 0.004 23.5 5.9 102 3-110 29-132 (132)
485 PF02184 HAT: HAT (Half-A-TPR) 31.1 1.1E+02 0.0023 17.5 3.4 21 142-164 3-23 (32)
486 PF09797 NatB_MDM20: N-acetylt 31.0 5.3E+02 0.011 25.5 16.8 213 3-220 65-310 (365)
487 PRK06645 DNA polymerase III su 30.9 5.5E+02 0.012 26.8 10.7 32 128-160 260-291 (507)
488 PF13762 MNE1: Mitochondrial s 30.8 3.1E+02 0.0067 22.7 11.2 81 199-279 42-128 (145)
489 PF03745 DUF309: Domain of unk 30.5 1.8E+02 0.0038 19.8 6.0 32 426-457 11-42 (62)
490 PRK09462 fur ferric uptake reg 30.3 2.6E+02 0.0056 23.1 7.0 36 499-534 32-67 (148)
491 cd08819 CARD_MDA5_2 Caspase ac 30.3 2.3E+02 0.0049 20.9 7.3 60 401-465 23-82 (88)
492 PF09868 DUF2095: Uncharacteri 29.9 2E+02 0.0043 22.3 5.3 25 26-50 67-91 (128)
493 PRK09857 putative transposase; 29.8 3.9E+02 0.0084 25.4 8.8 64 489-553 211-274 (292)
494 COG2912 Uncharacterized conser 29.6 2.8E+02 0.006 25.8 7.4 59 557-616 187-245 (269)
495 KOG2066 Vacuolar assembly/sort 29.3 7.9E+02 0.017 26.9 34.9 102 168-278 363-467 (846)
496 PRK09462 fur ferric uptake reg 28.9 3.3E+02 0.0072 22.5 7.4 59 440-499 8-67 (148)
497 cd02683 MIT_1 MIT: domain cont 28.8 2.2E+02 0.0048 20.4 6.4 15 599-613 19-33 (77)
498 PF00244 14-3-3: 14-3-3 protei 28.8 4.5E+02 0.0098 24.0 11.2 39 98-136 8-46 (236)
499 KOG2581 26S proteasome regulat 28.6 6E+02 0.013 25.3 11.4 130 414-547 124-275 (493)
500 PF10366 Vps39_1: Vacuolar sor 28.6 2.8E+02 0.0061 21.5 7.1 26 340-365 42-67 (108)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-72 Score=611.86 Aligned_cols=607 Identities=18% Similarity=0.209 Sum_probs=531.7
Q ss_pred cCCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
.++..+.+.++..+.+.|++++|+.+|+.+.+.+ .+|+..+|..++..|.+.+.++.+.+++..+.+.+..++...++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3445556788889999999999999999998876 789999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (673)
++..|++.|+++.|..+|++|.+ ||..+|+.+|.+|++.|++++|+.+|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999974 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
++.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|+.++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999864 6889999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 005856 257 MKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336 (673)
Q Consensus 257 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (673)
|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999888 89999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHH
Q 005856 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPV 415 (673)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 415 (673)
..+|+.++.+|++.|++++|+++|++| ...++.||..+|+.++.+|++.|+++.|.++++.+.+.+ .++..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M--------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALM--------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHH--------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 889999999999999999999999999 445677888899999999999999999999999888888 78888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (673)
+++.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 888888888888888888888888864 4677888888888888888888888888875 57777777776666555
Q ss_pred ccCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGV------------------------------KENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|.+.|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555444444444332 567888999999999999999999999999
Q ss_pred HhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHh-cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005856 546 MQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL-GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (673)
Q Consensus 546 ~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (673)
.+.|+.|| +..++.+|.+.|++++|.++|+.+. +.+..|+..+|..++++|.+.|++++|.+++++|. ..|+.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 99999998 5668888999999999999999998 57889999999999999999999999999999984 45677
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 622 KSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
..|..|+.+|..+|+.+.++.+.+.+.+.+++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 77888888888888888877777776666543
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-72 Score=609.74 Aligned_cols=566 Identities=20% Similarity=0.236 Sum_probs=352.6
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
.+++.++..+.+.|++++|+.+|+.|...+ +.|+..+|..++++|...+++..+.+++..+.+.|+.|+..+++.++.+
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 344445555555555555555555555443 4555555555555555555555555555555555555555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 180 (673)
|++.|+++.|..+|++|.+ +|..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 6666666666666666653 555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666542 45666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhH
Q 005856 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (673)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (673)
|+.||..||+.++.+|++.|+++.+.++++.+.+.|..| +..+++.++.+|++.|++++|.++|++|.+ +|..+|
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~ 458 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISW 458 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeH
Confidence 666666666666666666666666666666666666655 666666666666666666666666666542 455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHH
Q 005856 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNN 419 (673)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 419 (673)
+.++.+|++.|+.++|+.+|++|.. +..||..+|+.++.+|++.|..+.+.+++..+.+.+ .++..++++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~---------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL---------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 6666666666666666666666631 245666666666666666666666666666666666 556666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (673)
|+.+|++.|++++|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 666666666666666666655 356666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHH
Q 005856 500 VQTASRVMKSMV-EKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 500 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~ 575 (673)
+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++| +..|+ |.+++.+|...|+.+.+....+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666666666666 3466666666666666666666666666666655 24555 4455666666666666666666
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 618 (673)
++++..|. +...|..+..+|...|++++|.++.+.|.+.+..
T Consensus 682 ~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 682 HIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 66655432 3444555666666666666666666666665543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-66 Score=552.81 Aligned_cols=519 Identities=17% Similarity=0.295 Sum_probs=475.1
Q ss_pred CChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
.....++..+.+.|+++.|+++|++|.+.+..+++...+..++..|.+.|.++.|..+++.|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3356667788888999999999999998875677888888899999999999999999999975 799999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 180 (673)
|++.|+++.|..+|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE--KNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChh
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.| |..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhH
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAF 417 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 417 (673)
+|+.++.+|++.|++++|.++|++| ...+..|+..+|+.++.+|++.|++++|.++|++|...+ .||..+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM--------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI--------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH--------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999 445677999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----c-------------------CChHHHHHHHHH
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----K-------------------GEPADAKTALDS 474 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~ 474 (673)
+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..|.+ + +..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865432 1 123678899999
Q ss_pred HHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
|.+.|+.||..||+.++.+++..+....+..+++.|...+..|+..+|+.++.++.+. .++|+.++++|...|+.|++
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999988888888888888888888778888889999999887432 46899999999999999884
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-65 Score=543.18 Aligned_cols=542 Identities=17% Similarity=0.253 Sum_probs=327.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
++...|..+...+.+.|+++.|.++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4444555555555566666666666666655553 34444555555566666666666666655543 566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS--FDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 290 (673)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666644 3455666666666666666666666666666
Q ss_pred HHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhcc
Q 005856 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (673)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (673)
.|.+.++.| +..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|
T Consensus 604 ~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM------- 675 (1060)
T PLN03218 604 MIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA------- 675 (1060)
T ss_pred HHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------
Confidence 666665555 555666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 005856 371 RPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (673)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 449 (673)
...+..|+..+|+.++.+|++.|++++|.++|+.|.+.+ .|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 676 -~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 -RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred -HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 334455566666666666666666666666666665555 556666666666666666666666666666665666666
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
.+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.++++..+.+.+...+. ....
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~ 822 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQ 822 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccc
Confidence 6666666666666666666666666666666666666666554332 123333333222221100 0001
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 606 (673)
...+..++|+.+|++|.+.|+.|+.. .++..+...+....+..+++.+...+..++...|+.+++++.+. .++|.
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 11223467888888888888888843 34555556777788888877666666666777888888877321 35788
Q ss_pred HHHHHHHHcCCCCCHH
Q 005856 607 SILFKIMEKGGVTDWK 622 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~ 622 (673)
.++++|...|..|++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 8888888888776653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-61 Score=509.37 Aligned_cols=525 Identities=20% Similarity=0.227 Sum_probs=437.1
Q ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005856 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (673)
..+..+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688888999999999999999999887653 678889999999999999999999999999998888899999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999988864 68889999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005856 282 MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLD 361 (673)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 361 (673)
.+.+.+++..+.+.|..+ |..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|+++|+
T Consensus 240 ~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999888888887 88899999999999999999999998885 4688889999999999999999999999
Q ss_pred HHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 005856 362 KLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (673)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 440 (673)
+| ...++.||..||+.++.+|++.|+++.|.+++..+.+.+ +++..+++.|+.+|++.|++++|.++|+.|
T Consensus 315 ~M--------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EM--------RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HH--------HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99 455677899999999999999999999999999999888 888899999999999999999999999988
Q ss_pred HhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCH
Q 005856 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENL 519 (673)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 519 (673)
.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+. |+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 64 6888999999999999999999999999998899999999999999999999999999999999864 888999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+|+.++.+|.+.|++++|.++++++ +..|+ |..++.+|...|+++.|..+++++.+.+|. +...|..++.+|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHH
Confidence 99999999999999999999888754 56777 667888888999999999999888776543 456788899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC----HHHHHH----HHHHHHhcCCcc----hHHHHHHHHHhhh---------cccc
Q 005856 597 LAAGKTLNAYSILFKIMEKGGVTD----WKSSDK----LIAGLNQEGNTK----QADILSRMIRGEM---------SRGS 655 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~----l~~~~~~~g~~~----~a~~~~~~~~~~~---------~~~~ 655 (673)
.+.|++++|.+++++|.++|..+. |..... .+.+-..+.+.+ ....+...+.+.+ ++.+
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence 999999999999999998875322 111000 000001111111 1122333333323 4556
Q ss_pred hhhhhhhhcchhhhhcc
Q 005856 656 QKEKKQRHCRHSMILNY 672 (673)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (673)
+.+|+..|+.|||.|.|
T Consensus 619 ~~~~~~~~~~hsekla~ 635 (697)
T PLN03081 619 EDEEKVSGRYHSEKLAI 635 (697)
T ss_pred HHHHHHHHHhccHHHHH
Confidence 78999999999999876
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-59 Score=497.23 Aligned_cols=508 Identities=16% Similarity=0.231 Sum_probs=452.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
.+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+..++..|.+.|+.|+..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344578899999999999999999999998754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999994 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468899999999999999999999999999
Q ss_pred HHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCC
Q 005856 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (673)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (673)
.+.|+.| |..+|+.++.+|++.|+++.|.+++..+.+.|++|+..+++.++.+|++.|++++|.++|++| .
T Consensus 317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--------~ 387 (697)
T PLN03081 317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--------P 387 (697)
T ss_pred HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--------C
Confidence 9999888 889999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHH
Q 005856 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPRDAD 450 (673)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 450 (673)
. ||..+|+.++.+|++.|+.++|.++|++|.+.+ .||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 2 688899999999999999999999999999998 89999999999999999999999999999986 68999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+.++. +..+|..++..|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~ 539 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYN 539 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHH
Confidence 9999999999999999999998876 68899999999999999999999999999999766543 5678999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--H--HHHH---HH-HH-------ccCChHHHHHHHHHHhcCCCCCCh
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPN--F--DSLL---SV-LS-------EKGKTIAAVKLLDFCLGRDCIIDL 586 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~--~--~~~~---~~-~~-------~~g~~~~A~~~~~~~~~~~~~~~~ 586 (673)
+.|++++|.++++.|.+.|+... . ..+. .. .. ...-++....+.+++.+.|..|+.
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999887533 1 1100 00 00 011234555667777777877764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.6e-38 Score=352.23 Aligned_cols=592 Identities=15% Similarity=0.118 Sum_probs=465.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
.++...|+++.|...|+.+.+.. |.+...+..+..++...|++++|...++.+.+... .+...+..+...+.+.|++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCH
Confidence 35556777777777777777665 55666677777777777888888777777766543 3566777777777788888
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.+.. .......++..+.+.|++++|..+++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888777654 345566777777777778888888888777665322 3344555667777888888888888887
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+.+.... +.+..
T Consensus 458 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 7653 3467778888888888888888888888887653 3355667778888888888888888888887754 45667
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (673)
++..+...+...|+.++|...++++... .|.+...+..++..+...|+++.|..+++.+.+.. +.+...+..+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 7888888888888899998888888775 45577778888888888999999999998887753 56677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (673)
...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...++++.+..+.+..++..++..+...
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 99999999999998886543 124456778888888899999999999998888888888899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 005856 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (673)
Q Consensus 428 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (673)
|++++|..+++.+.... +.+...+..+...+...|++++|...++.+...+ |+..++..+...+...|++++|...+
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999888764 4467788888888999999999999999988754 55577778888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 508 KSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.+.+..+. +...+..++..|...|++++|.+.|+++.+ ..|+ +..++..+...|+ .+|+.++++++...+.
T Consensus 760 ~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 999887654 778888888999999999999999999887 3444 3457777788888 8899999999887654
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (673)
++..+..++.++...|++++|.+.++++++.++. ++..+..++.+|.+.|++++|..+.+.+.
T Consensus 836 -~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 -IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4556678899999999999999999999987644 77788889999999999999977766553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-36 Score=338.93 Aligned_cols=593 Identities=16% Similarity=0.085 Sum_probs=418.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
...|+++.|+..|+.+.+.+ +.....+..+..++...|+++.|...++.+.+..+ .+...+..+...+.+.|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHH
Confidence 34455555555555555543 23333444445555566666666666666555432 2445555556666666666666
Q ss_pred HHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 111 VKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 66666665543 3445566666666666677777777766665542 224455555666666667777777776666655
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005856 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (673)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (673)
... .......++..+.+.|++++|.++++.+... .+++..+|..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 2334445566667777777777777777654 34456677777777778888888888887776643 34455666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 005856 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (673)
Q Consensus 271 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (673)
.+...+...|++++|.+.++.+... .|.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 6777777788888888888877764 34467777777788888888888888888776654 45556667777788888
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+..+.++..+..+..++...|++
T Consensus 581 ~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 581 GQLKKALAILNEAADAA---------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred CCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 88888888888875432 235567888888888888888888888888887777788888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887753 3357788888888888888888888888887754 455667777778888888999999988888
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCCh
Q 005856 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL 586 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (673)
...++.+ ..+..++.++...|++++|.+.++++.+ ..|+ ...++..+...|++++|...|+++++..|+ +.
T Consensus 730 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 804 (899)
T TIGR02917 730 LKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NA 804 (899)
T ss_pred HhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CH
Confidence 8875443 5666788888888999999988888887 3344 334666777889999999999988887653 56
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhc
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMS 652 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 652 (673)
..+..+++++...|+ .+|++.++++++... .+...+..++.++...|++++|....+.+.+.++
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777888899999888 889999998887642 3445566788888999999999777666666554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.9e-29 Score=281.63 Aligned_cols=600 Identities=12% Similarity=0.063 Sum_probs=407.7
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHH--------------
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMF-------------- 94 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 94 (673)
+....++.+.|.+.++++.... |.++.++..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchh
Confidence 4445556666666666665554 455555555666666666666666666655554322 22211
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005856 95 --EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS-YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (673)
Q Consensus 95 --~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (673)
......+.+.|++++|...|+.+.+.+ +++... ...........|++++|+..++++.+.. +-+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 222334555566666666666655432 222211 1111111122355666666666655542 22344445555555
Q ss_pred HhcCCHHHHHHHHHHHHhC------------------------------------------------------CCCcCHH
Q 005856 172 FLSLKLETAIRFFEDMKSR------------------------------------------------------GISLDVV 197 (673)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~------------------------------------------------------~~~~~~~ 197 (673)
...|++++|+..++++... ...|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 5556666555555554321 1111111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH-------
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP-NAVTY------- 269 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------- 269 (673)
.......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..-.. ....+
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 0122455677899999999999998863 3377889999999999999999999999988753111 11111
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 270 -----TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 270 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
......+.+.|++++|...|++++.. .|.+...+..+..++...|++++|+..|+++.+.. +.+...+..+.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 12244667899999999999999986 56688888999999999999999999999999864 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (673)
..|. .++.++|+.+++.+...................+..+...+...|++++|...+++..+..|.++..+..+...|
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6664 467899998887763211000000000011224556677888999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh---------hHHHHHHHHh
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS---------LFRSVMESLF 495 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~ 495 (673)
...|++++|...++.+.+.. +.+...+..+...+...++.++|+..++.+......++.. .+......+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998753 2355666666667788999999999998764322222211 1234456788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~ 571 (673)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++ ..|+ ...++.++...|++++|+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999872 233556677899999999999999999999998 5566 345777888999999999
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV--T---DWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
+.++++++..+. +...+..++.++...|++++|.+.+++++..... + ....+..+...+...|++++|...++.
T Consensus 658 ~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988887543 4455667899999999999999999999875432 2 224556678889999999999777665
Q ss_pred HH
Q 005856 647 IR 648 (673)
Q Consensus 647 ~~ 648 (673)
..
T Consensus 737 Al 738 (1157)
T PRK11447 737 AM 738 (1157)
T ss_pred HH
Confidence 54
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.5e-28 Score=269.88 Aligned_cols=573 Identities=13% Similarity=0.077 Sum_probs=377.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhH------
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY------ 129 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------ 129 (673)
...+...++.+...++.+.|.+.++++....+. ++.++..++..+.+.|+.++|.+.++++.+.. |.+...+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~ 105 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence 334566777888999999999999999887554 78899999999999999999999999999865 2333322
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 005856 130 ----------DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH-TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVT 198 (673)
Q Consensus 130 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 198 (673)
..+...+...|++++|...|+++.+.+ +|+.. ....+.......|+.++|...++++.+..+. +...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHH
Confidence 334557889999999999999998763 33332 1212222233469999999999999988533 6778
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCC----------------CCCC---HHHHHHH----------------------
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEKN----------------IEPT---VISYTTM---------------------- 237 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~---~~~~~~l---------------------- 237 (673)
+..+...+...|+.++|+..++++.... ..++ ...+...
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 8889999999999999999999875431 0111 1112111
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhH
Q 005856 238 ------------IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF 305 (673)
Q Consensus 238 ------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (673)
...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++..........+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 233445566666666666666542 2345566666666666666666666666666542211111111
Q ss_pred ------------HHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 306 ------------MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 306 ------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++.. +
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p- 416 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----P- 416 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C-
Confidence 112334556666666666666666653 3344455556666666666666666666665432 1
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV---------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 444 (673)
.+...+..+...+. .++.++|..+++.+....+ .....+..+...+...|++++|.+.++++.+..
T Consensus 417 ----~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 417 ----GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred ----CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12233444444443 3455666665554332210 011234445566667788888888888777753
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH----
Q 005856 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD---- 520 (673)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 520 (673)
. -+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++..
T Consensus 492 P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 492 P-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 2 255666777777888888888888888877532 2233334444444566778888887777654332222211
Q ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 521 -----LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 521 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
.+...+..+...|++++|+++++ ..+..|. ...+...+.+.|++++|+..++++++..|. +...+..++.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~ 645 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIE 645 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 12245667778888888888877 2222332 456788888999999999999999998765 4666778999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 595 ALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+|...|++++|++.+++++... +.+...+..+..++...|++++|..+.+.+.+..
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999988653 3345556678888999999999988777776654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.5e-25 Score=232.90 Aligned_cols=582 Identities=14% Similarity=0.087 Sum_probs=411.5
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
...|++++|+..|+.+++.+ |.+..++..+.++|...|++++|+..+++..+.++ -|...+..+ ..+ +++++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhH
Confidence 34599999999999999998 77899999999999999999999999999998754 244444443 222 899999
Q ss_pred HHHHHHHHHcCCccCHhhHHHHHHH--------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 005856 111 VKIFDIMKQLGVERSVKSYDALFKL--------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAI 181 (673)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 181 (673)
..+++++.+.. |-+...+..+... |.+.+ .|...++ .......|+..+.... .+.|...+++++|+
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999875 3445555555555 55554 4444444 3333334455555555 88999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNR-FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
..+..+.+.+.. +......|..+|.. .++ +.+..++... ++.+...+..+...|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 999999998644 56667777778887 466 8888886542 3358889999999999999999999999997643
Q ss_pred CC-CCCHHHHHHH------------------------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHH
Q 005856 261 DV-KPNAVTYTAL------------------------------LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (673)
Q Consensus 261 ~~-~~~~~~~~~l------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (673)
-. .|...++... +..+.+.++++.+.++. . ..|.+.. ...-.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~-~~~r~ 349 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL----A--TLPANEM-LEERY 349 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----c--CCCcchH-HHHHH
Confidence 21 1333333222 33444555555444331 1 3343332 22222
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHH
Q 005856 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389 (673)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (673)
......+...++...+..+.+.. +-+......+.....+.|+.++|..+|+..... .....++......++..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPF------QGDARLSQTLMARLASL 422 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC------CcccccCHHHHHHHHHH
Confidence 22234466667777777776642 445555666666778889999999999988542 11122233344466666
Q ss_pred HHccCC---HhHHH-------------------------HHHHHHHHcCCC--CHHhHHHHHHHHHhcCChhHHHHHHHH
Q 005856 390 LCHNGQ---TGKAE-------------------------IFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (673)
Q Consensus 390 ~~~~~~---~~~a~-------------------------~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 439 (673)
|.+.+. ..++. ..+.......++ ++..+..+..++.. +++++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 666554 22222 222222233345 77788888888876 788889998887
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 005856 440 MGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL 519 (673)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 519 (673)
..... |+......+...+...|++++|...++++... +|+...+..+..++...|+.++|..++++.++.++. +.
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 77643 55544444555557899999999999987653 355555667777888999999999999999887643 33
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..+..+...+...|++++|+..+++.++ ..|+ +..++.++.+.|++++|+..+++++...|. +...+..++.++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444455555667999999999999988 4455 345677788999999999999999998765 456777899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhccc
Q 005856 597 LAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (673)
...|++++|++.++++++.. +.+...+..+..++...|++++|....+...+..++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999864 3466777889999999999999988888877777543
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-24 Score=212.11 Aligned_cols=583 Identities=14% Similarity=0.103 Sum_probs=442.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
..+.+.|.+.|..+++++ |++...+..-+.+....|++..|..+|..++...+.-.+.....+..++.+.|+.+.|+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred CccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHH
Confidence 335799999999999987 788888877777888899999999999997665443333334445567789999999999
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRR---GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
.|.+..+.+ |.++.++..|...-... ..+..++.++....... .-++...+.|.+.|...|+++.++.+...+..
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 999999865 23333443333332233 34566777777665543 34777889999999999999999999999887
Q ss_pred CCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 190 RGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 190 ~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
.... .-...|-.+.++|-..|++++|...|.+..+....--+..+..+...+.+.|+++.+...|+.+.... +.+..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~e 377 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYE 377 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHH
Confidence 6321 12345778999999999999999999888775322123455678899999999999999999998762 44566
Q ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHH----hCCCCCChhh
Q 005856 268 TYTALLPGLCDAG----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI----RLSIPTEAGH 339 (673)
Q Consensus 268 ~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~ 339 (673)
|...+...|...+ ..+.|..++...++. .|.|...|..+...+....-+.. +..|..+. ..+.++.+..
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777665 567788888888775 46689999999888876554433 66666544 3455677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHchh-ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+.+...+...|++..|...|..+...-. ....+.+-.++..+-..+..+.-..++++.|.+.|..+.+..|.-...|.
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 99999999999999999999999976621 11112221233333444566667788999999999999999888888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhhHHHHHHHHhc-
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPASSLFRSVMESLFE- 496 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 496 (673)
.++.+....+...+|...++.....+ ..++..+..+...+.....+..|.+-|....+.. ..+|......|...|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 88866666788999999999988753 3467778888888998888988988777766442 22566666666665432
Q ss_pred -----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHc
Q 005856 497 -----------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG--SVPNFDSLLSVLSE 563 (673)
Q Consensus 497 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~ 563 (673)
.+..+.|+++|.++++.+++ |...-+.++-++...|++.+|..+|.++.+.. ..+.|..++.+|..
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 45678899999999988766 77777889999999999999999999999854 34458889999999
Q ss_pred cCChHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 564 KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (673)
+|++..|+++|+.+++. ..+.+......|++++++.|++.+|.+.+..++..........++
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 99999999999999986 445567888899999999999999999999988765443433333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.6e-23 Score=218.15 Aligned_cols=602 Identities=9% Similarity=0.011 Sum_probs=416.1
Q ss_pred hHHHHHHhccCCCCCh-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC
Q 005856 8 TRLQNKIRALVPQFDH-NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (673)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (673)
..++..++.-|.+... ..+..++...|++++|+..++.+.+.+ |.+...+..+..+ +++.+|..+++++.+..
T Consensus 65 ~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~ 138 (987)
T PRK09782 65 REFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQ 138 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhC
Confidence 3455555555555333 444568889999999999999999876 4555555544322 89999999999999876
Q ss_pred CCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCCC
Q 005856 87 VQWDEDMFEVLIES--------YGKKGIVQESVKIFDIMKQLGVERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEGI 157 (673)
Q Consensus 87 ~~~~~~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~ 157 (673)
+. +..++..+... |.+.++...++ + .......|+..+.... ...|.+.|++++|+.++.++.+.++
T Consensus 139 P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 139 KA-CDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred CC-ChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 54 56666666665 66654444444 4 3332233345544444 8999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHHHH
Q 005856 158 EPTRHTYNVMLWGFFL-SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYT 235 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 235 (673)
.+......+..+|.. .++ +.+..++.. .+.-+...+..+...|.+.|+.++|.++++++...... |...+|.
T Consensus 214 -l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 -LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred -CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 355556667777777 466 777777553 23348889999999999999999999999997654211 3333332
Q ss_pred H------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 236 T------------------------------MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (673)
Q Consensus 236 ~------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 285 (673)
- ++..+.+.++++.+.++.. +.|.......-..+....+...++
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHH
Confidence 1 2344555566664444321 234333321111222244677778
Q ss_pred HHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH-
Q 005856 286 QKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHYGILIENFCKAEM---YDRAIKL- 359 (673)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~- 359 (673)
.+.+..+.+. .|.+......+.....+.|+.++|..+|...... + ...+......++..|...+. ...+..+
T Consensus 362 ~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 362 LRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 8888888775 3557788888888889999999999999998763 1 22334455577777777765 3333333
Q ss_pred -----------HHHHHHchhc---cCCCCCC-CC--chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 360 -----------LDKLVEKEII---LRPQSTL-DM--EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 360 -----------~~~~~~~~~~---~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
..+..+.... .....+. ++ +...|..+..++.. ++.++|...+.+.....|. ......+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~~~~L~lA~ 517 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-AWQHRAVAY 517 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-hHHHHHHHH
Confidence 1111000000 0000011 22 45567777777766 8888999988888777654 333444555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (673)
.+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++.++.. +.+...+..+...+...|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 667899999999999998664 4455567777888999999999999999998754 2233333333444556799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHh
Q 005856 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (673)
|...+++.++..+ +...+..+..++.+.|++++|+..+++.+. ..|+ ...++.++...|++++|+..+++++
T Consensus 595 Al~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998765 577888999999999999999999999998 6677 3457778889999999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 579 GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 579 ~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
+..|. +...+..++.++...|++++|+..++++++.... ...+............++..|..-.+
T Consensus 671 ~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 671 KGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 98765 5667789999999999999999999999986532 23333345555666666666644333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-22 Score=188.87 Aligned_cols=436 Identities=15% Similarity=0.125 Sum_probs=324.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS 174 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (673)
..+..-.-+.|++..|++.-...-+.+ +.+....-.+-..+.+..+++.....-....+. .+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 334444456778888877766665543 222333333344555555666554433333332 233456777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 005856 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT-MIKGYVAVERADDALRI 253 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 253 (673)
|+++.|+..++.+.+...+ .+..|..+..++...|+.+.|...|.+..+. .|+.....+ +...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 8888888888888876433 5777888888888888888888888777764 355443332 33344456788888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC
Q 005856 254 FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI 333 (673)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 333 (673)
|.+..+.. +--...|+.+...+...|+...|++.|++.+. ++|.-..+|..|...|...+.++.|...+.+.....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 77776642 22234677777777788888888888888877 466667788888888888888888888888877653
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+.....+..+...|..+|..+.|+..|++.++.. | .-...|+.+..++-..|++.+|...+.+.....+..
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----P-----~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----P-----NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----C-----CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 3445666777777888899999999998887643 1 123478999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 492 (673)
+.+.+.|...|...|.+++|..+|....+.. +--...++.|...|-+.|++++|+..+++.+. +.|+ ...++.+..
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch
Confidence 9999999999999999999999999988742 22346788899999999999999999999886 6676 457888888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
.|-..|+.+.|...+.+++..++. -.+..+.|...|...|++.+|++-|++.++ ++||+
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 899999999999999999887654 356778899999999999999999999988 77773
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-22 Score=188.32 Aligned_cols=445 Identities=16% Similarity=0.160 Sum_probs=302.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHH
Q 005856 59 HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR 138 (673)
Q Consensus 59 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 138 (673)
...+..-..+.|++.+|++--..+-.++.. +....-.+-..+....+.+.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 444555566777787777766655444322 2233333333445555555544443333332 24455677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH-HHHHHHHHcCCChHHHHH
Q 005856 139 RGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTY-NTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 139 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~ 217 (673)
.|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 788888888888777653 225667777777777888888888887777765 4444433 233344445677788777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005856 218 LFAEMKEKNIEPT-VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (673)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 295 (673)
.|.+..+. .|. ...|..|...+...|+...|+..|++.... .|+ ...|..+...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77776654 222 356777777777788888888888877764 343 457777777888888888888887777663
Q ss_pred CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCC
Q 005856 296 YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST 375 (673)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 375 (673)
.|....++..+...|..+|+++.|++.+++.++.. |.-+..|+.+..++-..|++.+|...|.+++.-. +
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p--- 351 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC----P--- 351 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----C---
Confidence 56677777777777888888888888888877753 3335667888888888888888888888876543 1
Q ss_pred CCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHH
Q 005856 376 LDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD-ADAYIC 454 (673)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 454 (673)
.-..+.+.+...+...|.++.|..+|....+..+.-...++.|...|-.+|++++|...+++..+ +.|+ ...|+.
T Consensus 352 --~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 --NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred --ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 12346677778888888888888888888777766667788888888888888888888888776 3454 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
+...|-..|+.+.|.+.+.+.+.. .|. ...++.+...|..+|+..+|+.-++..++..++ .+..+..++.++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 888888888888888888887763 354 346677777788888888888888888776544 234444444443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7e-20 Score=182.11 Aligned_cols=561 Identities=13% Similarity=0.069 Sum_probs=403.6
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 005856 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (673)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (673)
.+.|...|..+.+..++ |...+---.......+++..|+.+|.........-.+.....+...+.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 58898999888887543 44333333333456689999999999977643211122223334566788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 005856 152 MLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (673)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (673)
.++.++ -++.++..|.-.-... ..+..+...+...-..+.. ++.+.+.|...|...|++..+..+...+......
T Consensus 225 alqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 225 ALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 987642 2333333332222222 3355666666666655433 7888899999999999999999999888765211
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHh
Q 005856 229 --PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSV 304 (673)
Q Consensus 229 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 304 (673)
.-...|..+.++|-..|++++|...|.+.... .++ ...+.-+.+.+.+.|+++.+...|+.+... .|++..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 12345888999999999999999999887765 344 345666788999999999999999999986 5768889
Q ss_pred HHHHHHHHhccC----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch
Q 005856 305 FMKLLGVQCKSG----HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (673)
Q Consensus 305 ~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (673)
...+...|...+ ..+.|..++....... +.|...|-.+...+-. ++...++.+|..+...- ...+..+.+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L----~~~~~~ip~ 452 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL----ESKGKQIPP 452 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH----HHcCCCCCH
Confidence 999999888775 5677888888877764 6677777777776655 44444477777765432 222333677
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA- 449 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 449 (673)
...|.+...+...|.+..|...|......- .++ ..+-..+..++-..++.+.|.+.|..+.... |.-
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhH
Confidence 789999999999999999999999987761 222 2234556677777889999999999998852 443
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEA 528 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 528 (673)
..|..+.......++..+|...+...... ...++..+..+...+.....+.-|.+-|..+.+. ...+|......|...
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 34444443334457788999999998863 3455556666666788888888888888877766 333466665566655
Q ss_pred HHc------------CCCHHHHHHHHHHHHhCCCCCC--H--HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 529 LLM------------RGHVEEALGRIDLMMQSGSVPN--F--DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 529 ~~~------------~g~~~~A~~~~~~~~~~~~~p~--~--~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
|.+ .+..++|+++|.+++. ..|. + +.++-+++..|++.+|..+|.+..+.... ...+|..+
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNl 686 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNL 686 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeH
Confidence 442 2346889999998888 5565 2 34778889999999999999988775321 34567789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGG-VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+.+|...|+|..|++.|+.++++.. ..+...+..|.+++...|++.+|...........
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998765 3456666779999999999999966554444444
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.9e-19 Score=187.85 Aligned_cols=428 Identities=15% Similarity=0.087 Sum_probs=279.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 243 (673)
+......+.+.|+++.|...|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455566667777777777776654 4455666666667777777777777777766643 2245566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (673)
.|++++|+..|......+ ..+......++..+.. ..+........+. .|.+...+..+...+ ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHH-HHccCCcchh
Confidence 777777776665554332 1111111111111111 1122222222222 121222222222211 1111111111
Q ss_pred HHHHHHhCCCCCCh-hhHHHHHHH---HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 324 VLKAMIRLSIPTEA-GHYGILIEN---FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.+....+. .+.. ..+..+... ....+++++|++.|+.+++.+ .........+..+...+...|++++|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 1110 111111111 123467889999999886542 01112345677778888889999999
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
...+++..+..|.....|..+..++...|++++|...++.+.+.+ +.+...|..+...+...|++++|...|++.++..
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999998888888889999999999999999999999988764 3467888899999999999999999999998753
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FD 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~ 555 (673)
+.+...+..+...+.+.|++++|+..|++.++..+. +...+..+..++...|++++|++.+++..+ ..|+ +.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~ 505 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYM 505 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccc
Confidence 334566777788888999999999999999887543 677888899999999999999999999887 3332 11
Q ss_pred H---H----HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 S---L----LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~---~----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
. + ...+...|++++|..++++++..++. +...+..+++++...|++++|++.++++.+..
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1 1 11223469999999999999988654 34567889999999999999999999988754
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-18 Score=182.89 Aligned_cols=450 Identities=15% Similarity=0.059 Sum_probs=236.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (673)
......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|...++...+.... +...+..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 33445556666666666666666553 345555666666666666666666666666655322 455566666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD--VKPNAVTYTALLPGLCDAGKMVEVQK 287 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~ 287 (673)
|++++|..-|......+...+. ....++..+.. ..+........+.. ..|...........+ .......
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence 6666666665554433111111 11111111111 11111122221111 011111111111111 1111111
Q ss_pred HHHHHHHCCCCCCcHHhHHHHHHHH---hccCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 288 VLREMVERYIPPKDNSVFMKLLGVQ---CKSGHLNAAADVLKAMIRLS--IPTEAGHYGILIENFCKAEMYDRAIKLLDK 362 (673)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 362 (673)
-+..... ..+.....+..+...+ ...+++++|...|+...+.+ .+.....+..+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 1111111111111111 22356666666666666543 122344555566666667777777777777
Q ss_pred HHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 363 LVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.++.. + .....|..+...+...|++++|...|+.+.+..+.++.++..+...+...|++++|...|+...+
T Consensus 357 al~l~----P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 357 SIELD----P-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHcC----C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65432 1 12335566666666777777777777777766666677777777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH---
Q 005856 443 RGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--- 519 (673)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 519 (673)
.. +.+...+..+...+.+.|++++|+..+++.++. .+.+...+..+...+...|++++|+..|++.++..+..+.
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 53 224556666677777777777777777777653 2334556666667777777777777777777765332111
Q ss_pred --H-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 520 --D-LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 520 --~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
. .++.....+...|++++|.+++++.+. ..|+ +..++..+...|++++|+.+|+++++..... ..
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----- 577 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----- 577 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH-----
Confidence 1 112222223335777777777777666 3444 2346666677777777777777777654221 11
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 005856 593 LDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
......+.+|..+..+..++
T Consensus 578 ---~~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 578 ---LVQAISYAEATRTQIQVQED 597 (615)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 12333455666665554443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.4e-20 Score=188.11 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=191.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC---HHHHHHHHHHHHh
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIESYGK 103 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 103 (673)
.......|+++.|+..|+.+.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556677777777777777765 55666777777777777777777777777766432211 2445666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 005856 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSLKLET 179 (673)
Q Consensus 104 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 179 (673)
.|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776643 345566777777777777777777777777665433221 133445556666777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
|...|+++.+... .+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777766532 234556666667777777777777777776543222234566666777777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc---cCChHHHHHHHHHHHhCCCCCC
Q 005856 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK---SGHLNAAADVLKAMIRLSIPTE 336 (673)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 336 (673)
. .|+...+..+...+.+.|++++|..+++++++. .| +...+..++..+.. .|+.+++..+++.+.+.++.|+
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4 355555566666667777777777777766664 34 44455555554443 3466666666666666555444
Q ss_pred hh
Q 005856 337 AG 338 (673)
Q Consensus 337 ~~ 338 (673)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 43
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=1.8e-17 Score=164.09 Aligned_cols=610 Identities=15% Similarity=0.104 Sum_probs=379.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
.+.+...|+.+.|.+++..+.+++ |..+.+|..+..+|-..|+..++...+-.+-...+ -|...|..+.......|+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhccc
Confidence 457778899999999999999998 88999999999999999999999988776544433 377999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN----VMLWGFFLSLKLETAIR 182 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~ 182 (673)
++.|.-.|.+..+.. |++....-.-+..|-+.|+...|.+-|.++....++.|..-+. .++..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999876 4555555566788899999999999999998874433332222 33556667777799999
Q ss_pred HHHHHHhCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---------------------------CHHHH
Q 005856 183 FFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP---------------------------TVISY 234 (673)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~ 234 (673)
.++.....+ -..+...++.++..+.+...++.+......+......+ +...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 999887732 23356678888999999999999988887776522222 22221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHH
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ 312 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (673)
-++-++.+....+....+........+ .-+...|.-+..++...|.+.+|+.++..+....... +..+|..+..+|
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCY 459 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHH
Confidence 122233333444444444444444443 3345678889999999999999999999998875444 678999999999
Q ss_pred hccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc
Q 005856 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH 392 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (673)
...|..+.|...|+.++... |.+...--.|...+.+.|+.++|.+.++.+...+....+.....|+........+.+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999999874 55666777788899999999999999998753321111233344555544445555666
Q ss_pred cCCHhHHHHHHHHHHHcC-----------------------CCCHH----------------------------------
Q 005856 393 NGQTGKAEIFFRQLMKKG-----------------------VLDPV---------------------------------- 415 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~-----------------------~~~~~---------------------------------- 415 (673)
.|+.++-..+...++... +....
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 666655443333332211 00001
Q ss_pred ---------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 005856 416 ---------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRDA---DAYICLIESYLRKGEPADAKTALDSMIED-GH 480 (673)
Q Consensus 416 ---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 480 (673)
.+..++..+++.+.+++|..+...+..... .++. ..-...+.+.+..+++..|...++.|+.. ++
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 112233344444455555544444433210 0000 11222333344445555555555554432 11
Q ss_pred --CCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHH
Q 005856 481 --SPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDS 556 (673)
Q Consensus 481 --~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~ 556 (673)
.|. ...|+..+..+.+.|+-.--.+.+..+.......+..........+...+.+.-|+..+-++.. .+..|-...
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 011 1122222222333332222222222222221111122222222333455667888877766655 233343221
Q ss_pred -HHHHH-----H-----ccCChHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----
Q 005856 557 -LLSVL-----S-----EKGKTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----- 619 (673)
Q Consensus 557 -~~~~~-----~-----~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~----- 619 (673)
++.++ . +.-..-.+..++++-.+.. +...-++...++++|...|=..-|..+|++++.....+
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~ 858 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPK 858 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccccc
Confidence 11111 1 1223345555655444432 22234555679999999999999999999999864221
Q ss_pred ----C---HHHHHHHHHHHHhcCCcchHHHHH
Q 005856 620 ----D---WKSSDKLIAGLNQEGNTKQADILS 644 (673)
Q Consensus 620 ----~---~~~~~~l~~~~~~~g~~~~a~~~~ 644 (673)
+ -.++ .|.-.|.++|+...|..+.
T Consensus 859 ~d~~dLrkeAA~-NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 859 EDNYDLRKEAAY-NLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred CCcccHHHHHHh-hhhhhhccCCcHHHHHHHH
Confidence 1 1122 2566799999999996554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=9.2e-19 Score=183.03 Aligned_cols=361 Identities=11% Similarity=0.044 Sum_probs=169.8
Q ss_pred hcCCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 31 HGAKNSEHALQFFRWVERAGLF-NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 109 (673)
.++.+|+..--+|....+...- ..+..-...++..+.+.|++..|..+++......+. +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3444555544444444333210 111222333444445555555555555555544333 33333444444445555555
Q ss_pred HHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 110 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
|...|+++.+.. |.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555555555433 2334445555555555555555555555554431 22334444555555555555555555555444
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 190 RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269 (673)
Q Consensus 190 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (673)
.... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++.+.... +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3222 12222222 2244455555555555555443222222233333444555555555555555555432 2234444
Q ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005856 270 TALLPGLCDAGKMVE----VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (673)
Q Consensus 270 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (673)
..+...+...|++++ |...+++++.. .|++..++..+...+...|++++|...++++.... +.+...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445555555555543 45555555542 34455555555555555555555555555555442 233344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch-hhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
++.+.|++++|+..|+.+.+.. |+. ..+..+..++...|+.++|...|++..+..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~----------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK----------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555555555555555554321 111 222333444555555555555555555443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.8e-18 Score=182.53 Aligned_cols=404 Identities=13% Similarity=0.065 Sum_probs=237.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 242 (673)
...-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|++..... +.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33344444445555555555555554321 2233344555555555555555555555544431 223334444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 322 (673)
..|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++++. .|++...+..+..++...|..+.|+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 5555555555555554431 22223 444444445555555555555555543 3334444444444444444444444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHH-----HccCCH-
Q 005856 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHL-----CHNGQT- 396 (673)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~- 396 (673)
..++.+.. .|+ +. ... ........+... ...+++
T Consensus 171 ~~l~~~~~---~p~---~~-------------~~l---------------------~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 171 GAIDDANL---TPA---EK-------------RDL---------------------EADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred HHHHhCCC---CHH---HH-------------HHH---------------------HHHHHHHHHHhhcccccChhHHHH
Confidence 44443332 111 00 000 000011111111 122233
Q ss_pred --hHHHHHHHHHHHcCC--CCH-HhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChH
Q 005856 397 --GKAEIFFRQLMKKGV--LDP-VAFN----NLIRGHSKEGNPDSAFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPA 466 (673)
Q Consensus 397 --~~a~~~~~~~~~~~~--~~~-~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (673)
+.|+..++.+.+..+ |+. ..+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 678888888886531 211 1111 1133456779999999999999886532 322 2222577899999999
Q ss_pred HHHHHHHHHHHcCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-----------KEN---LDLVAKILEAL 529 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 529 (673)
+|...++++.+..... .......+..++...|++++|..+++.+.+..+ .|+ ...+..++..+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999987643111 123455666678899999999999999987643 123 23455677788
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
...|++++|+++++++.. ..|+ ...++..+...|++++|++.+++++...|. +...+..++..+.+.|++++|
T Consensus 370 ~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 370 KYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999887 5566 345667777899999999999999998754 344566788899999999999
Q ss_pred HHHHHHHHHcC
Q 005856 606 YSILFKIMEKG 616 (673)
Q Consensus 606 ~~~~~~~~~~~ 616 (673)
.+.++++++..
T Consensus 447 ~~~~~~ll~~~ 457 (765)
T PRK10049 447 DVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.1e-18 Score=179.12 Aligned_cols=334 Identities=9% Similarity=0.004 Sum_probs=271.1
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+...+.+.|+++.|+.+++..+... |.+..++..++.++...|+++.|...++++....+. +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3445557778999999999999999887 677888888888888999999999999999887544 6778888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 182 (673)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998864 456778888999999999999999999988765433 33333333 34778899999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 005856 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD----ALRIFDEMK 258 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 258 (673)
.++.+......++...+..+...+...|++++|...+++..... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99998876444455555666778889999999999999998764 3467778889999999999885 799999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChh
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
+.. +.+...+..+...+...|++++|...+++++.. .|++..++..+..++.+.|++++|...++.+...+ +.+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 763 445678888899999999999999999999885 67688888899999999999999999999998763 22233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.+..+..++...|+.++|+..|+++++..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445677889999999999999987654
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.5e-19 Score=180.88 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=179.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--cHHhHHHHHHHHhccCChH
Q 005856 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLN 319 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 319 (673)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+......+. ....+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555554432 22333444444455555555555555555444311110 1123445555555555666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.. +..........+..+...+...|++++|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6666555555432 3344555566666666666666666666664432 1100000112344555666677777777
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
...++++.+..+.+...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777766666666777777788888888888888888776432222456677777888888888888888887764
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+.++.|+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 355556677777778888888888888877765 3556666666655543 4577788888887776554444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6.4e-18 Score=180.79 Aligned_cols=422 Identities=12% Similarity=0.065 Sum_probs=227.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
.++.-..-.+.+....|+.++|++++....... +.+...+..+..++...|++++|..+|++..+.. |.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 334444444444445555555555555444311 2233344444445555555555555555544432 22333444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 005856 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 213 (673)
..+...|++++|+..+++..+.. +.+.. +..+..++...|++++|...++++.+..+. +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 44555555555555555554431 12233 444444444555555555555555544222 3333333444444445555
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHH
Q 005856 214 EAEKLFAEMKEKNIEPTV------ISYTTMIKGYV-----AVERA---DDALRIFDEMKSF-DVKPNAV-TYT----ALL 273 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll 273 (673)
.|...++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 55554443332 1110 01111111111 11223 5667777776643 1122221 111 113
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCC-CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHh
Q 005856 274 PGLCDAGKMVEVQKVLREMVERYIP-PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFCK 349 (673)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 349 (673)
.++...|++++|+..|+.+.+.+.. |.+ ....+...+...|++++|+..|+.+....... .......+..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 3445667888888888887776422 212 22334667788888888888888876643111 12345556667788
Q ss_pred cCCHHHHHHHHHHHHHchhccCC---CCCCCCch---hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 005856 350 AEMYDRAIKLLDKLVEKEIILRP---QSTLDMEA---SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG 423 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (673)
.|++++|..+++.+.+....... .....|+. ..+..+...+...|+.++|+..++++....|.++..+..++..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888654310000 00112221 2344566677778888888888888887777778888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 424 HSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 424 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
+...|++++|++.++.+.... +.+...+...+..+...|++++|..+++++++. .|+.....
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 888888888888888877753 234566666677777888888888888888763 35544433
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=9.7e-15 Score=139.45 Aligned_cols=581 Identities=12% Similarity=0.071 Sum_probs=345.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIF 114 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 114 (673)
+...|..+++...+.+ |.++..|..-.+.--..|.+..|..+...--+. ++.+..+|.--+ +....+.|..+.
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 7788999999999998 677777777777777778888888776643221 233455553332 333444455555
Q ss_pred HHHHHcCCccCHhhHHHHHHH---------------------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 115 DIMKQLGVERSVKSYDALFKL---------------------------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 115 ~~~~~~g~~~~~~~~~~l~~~---------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
....+.- |.++..|-..... -....+.+.|.-++.+..+. ++.+.. |
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~d----L 412 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMD----L 412 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHH----H
Confidence 4444421 2333333222211 12223444455555555443 222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHh
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM----KEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~ 243 (673)
..++++..-++.|..++....+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 23344555566666666666554 3445556655555555566666666665543 234555566666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (673)
.|..-.+..+.......|+.-. ..||..-...|.+.+.++-+..+|...++ +.|.+...|......--..|..+..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666655554332 23566666666666666666666666665 3454666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (673)
..+|.++... ++.....|-.....+-..|+...|..++..+.+.. + .+...|-+.+.......+++.|..
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----p-----nseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----P-----NSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----C-----CcHHHHHHHHHHhhccccHHHHHH
Confidence 6666666654 23344444444555555667777776666665443 1 134456666666666667777777
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 481 (673)
+|.+.... .++..+|..-+...-..++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+. .+
T Consensus 640 llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 76666554 234445555555555556667777777666654 2223345666666666666666666666655442 22
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHH
Q 005856 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSL 557 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 557 (673)
-....|..+...-.+.|..-.|..++++..-.+++ +...|-..++.-.+.|+.+.|..+..+.++ --|+ |...
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHH
Confidence 23445555555556667777777777777776665 666777777777777777777776666555 2233 2333
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+....+-++.-.....+++ ++.++...-.++..++...+++.|.+.|.+.+..+. ..-..|..+..-+..+|.-
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCH
Confidence 3333344444444444442 344667777888999999999999999999998653 2334556677888899998
Q ss_pred chHHHHHHHHHhhhcc
Q 005856 638 KQADILSRMIRGEMSR 653 (673)
Q Consensus 638 ~~a~~~~~~~~~~~~~ 653 (673)
++-..+.++...-++.
T Consensus 868 ed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 868 EDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHhccCCC
Confidence 8888888887766533
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2e-16 Score=165.53 Aligned_cols=448 Identities=12% Similarity=0.068 Sum_probs=186.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC
Q 005856 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (673)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (673)
.-+....+.|+++.|+..|+++.+..+.-...++ .++..+...|+.++|+..+++.... -+........+...+...|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 3333444555555555555555544322111222 4444555555555555555555420 0111112222233444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH
Q 005856 141 RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFA 220 (673)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 220 (673)
++++|+++|+++.+..+ -+...+..++..+...++.++|+..++.+... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 55555555555555421 23344444445555555555555555555544 2333333223223323344434555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
++.+.. +.+...+..++.+..+.|-...|.++..+- |+..+-...... +.+.+.+..+- ...+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~ 257 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM----AVLPT 257 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh----ccccc
Confidence 555442 223444444455555555555554443321 111111100000 00111111110 00000
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC-C-CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHY----GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQS 374 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 374 (673)
... . .+.--.+.|+.-++.+... + .|+....| .-.+-++...|++.++++.|+.+ +..
T Consensus 258 ~~~--~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l--------~~~ 321 (822)
T PRK14574 258 RSE--T------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM--------EAE 321 (822)
T ss_pred ccc--h------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--------hhc
Confidence 000 0 0000123344444444331 1 11111111 12234555666666666666666 333
Q ss_pred CCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---
Q 005856 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--- 445 (673)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 445 (673)
+.+....+-..+.++|...+++++|+.+++.+.... +++......|.-++...+++++|..+++.+.+...
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 333344455666666666666666666666665432 11222235556666666666666666666654211
Q ss_pred --------CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005856 446 --------PRDA---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG 514 (673)
Q Consensus 446 --------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 514 (673)
.|++ ..+..++..+...|+..+|.+.++.+.... +-|..........+...|.+.+|...++.+....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 0111 112223333444444444444444443321 2233334444444444444444444443333332
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+. +.......+.++...|++++|..+.+.+.+
T Consensus 481 P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 481 PR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred Cc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 22 233333344444444444444444444443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=6e-16 Score=162.00 Aligned_cols=447 Identities=12% Similarity=0.064 Sum_probs=325.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
+..+.|+++.|+..|+.+++.+ |.++.....++.++...|+.++|+..+++.... .+.+......+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 6668999999999999999887 444333338888889999999999999999832 2234555555577889999999
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
+|.++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999876 455677778888999999999999999999775 4555555444444445667767999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY------TTMIKGY-----VAVER---ADDALRIF 254 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~ 254 (673)
+.... +...+..+..+..+.|-...|.++..+-... +.+....+ ..+++.- ...++ .+.|+.-+
T Consensus 197 ~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 98533 6778888889999999999998877654321 11111111 1111111 01122 34455555
Q ss_pred HHHHh-CCCCCCH-HH----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 255 DEMKS-FDVKPNA-VT----YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 255 ~~~~~-~~~~~~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
+.+.. .+-.|.. .. ..-.+-++...|++.++++.++.+...+.+. ...+...+..+|...+..++|..++..+
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 55543 1222332 22 2234557788999999999999999887554 4568899999999999999999999999
Q ss_pred HhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC-----CCCCCCCchh-hHHHHHHHHHccCCHh
Q 005856 329 IRLS-----IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR-----PQSTLDMEAS-SYNPMIQHLCHNGQTG 397 (673)
Q Consensus 329 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~~~~~ 397 (673)
.... .+++......|.-+|...+++++|..+++.+.+...... +.....||-. .+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7653 123344457788999999999999999999976421000 0111122222 2344566778899999
Q ss_pred HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
+|++.++.+....|.|+.....+...+...|.+.+|...++.+... -+-+..+....+.++...+++.+|..+.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999777665 233567777888888889999999999988886
Q ss_pred cCCCCchhhH
Q 005856 478 DGHSPASSLF 487 (673)
Q Consensus 478 ~~~~~~~~~~ 487 (673)
. .|+....
T Consensus 513 ~--~Pe~~~~ 520 (822)
T PRK14574 513 R--SPEDIPS 520 (822)
T ss_pred h--CCCchhH
Confidence 4 3554433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=6.4e-15 Score=146.38 Aligned_cols=584 Identities=14% Similarity=0.145 Sum_probs=400.2
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+..+....|+...++..+--+...+ |.+...|..+.....+.|++++|.-+|.+.++..++ +....---...|-
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHH
Confidence 4666778889999999998877776555 788899999999999999999999999999988654 5555556677899
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHH----HHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDA----LFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKL 177 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 177 (673)
+.|+...|..-|.++.+...+.+..-... .+..+...++-+.|.+.++..... +-..+...++.++..+.+...+
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 99999999999999998653223222333 345566677779999988887653 2233455677888888899999
Q ss_pred HHHHHHHHHHHhCCC---------------------------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC--CC
Q 005856 178 ETAIRFFEDMKSRGI---------------------------SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN--IE 228 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~ 228 (673)
+.+......+..+.. .++..+ ..++-++......+....+...+...+ +.
T Consensus 333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 999888877765222 222222 123334444455555555555555554 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHH
Q 005856 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKL 308 (673)
Q Consensus 229 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (673)
-+...|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|.++.|.+.|+.++.. .|++..+...|
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~L 489 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITL 489 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhH
Confidence 4566788899999999999999999999988755566789999999999999999999999999985 67788999999
Q ss_pred HHHHhccCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC---C-----
Q 005856 309 LGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---P----- 372 (673)
Q Consensus 309 ~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~----- 372 (673)
...+.+.|+.++|.+.+..+..- +..|+..........+.+.|+.++-+.....++......+ +
T Consensus 490 asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~ 569 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKK 569 (895)
T ss_pred HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999986532 2344445555566677788887776555544443221000 0
Q ss_pred ------C-----------------------------------------CCCCCch--hhHHHHHHHHHccCCHhHHHHHH
Q 005856 373 ------Q-----------------------------------------STLDMEA--SSYNPMIQHLCHNGQTGKAEIFF 403 (673)
Q Consensus 373 ------~-----------------------------------------~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~ 403 (673)
. .+...+. ..+.-++.++++.+++++|+.+.
T Consensus 570 r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv 649 (895)
T KOG2076|consen 570 RRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVV 649 (895)
T ss_pred HHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0 0000000 11244566788899999999999
Q ss_pred HHHHHcC--CCCHH----hHHHHHHHHHhcCChhHHHHHHHHHHhC-CC---CCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 404 RQLMKKG--VLDPV----AFNNLIRGHSKEGNPDSAFEIVKIMGRR-GV---PRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 404 ~~~~~~~--~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
..+.... ..+.. .-...+.+.+..+++..|...++.|... +. ..-...|+...+.+.+.++-.--.+.+.
T Consensus 650 ~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~ 729 (895)
T KOG2076|consen 650 FTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIM 729 (895)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888775 22222 3355667778899999999999998864 11 1134566766666666665544444444
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc--------CCCHHHHHHHHHH
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLM--------RGHVEEALGRIDL 544 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~ 544 (673)
........-+..........+..++.+..|+..+-++....+. |-....-.+...... +-.+-.++.++++
T Consensus 730 ~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~R 809 (895)
T KOG2076|consen 730 RLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKR 809 (895)
T ss_pred HHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4433221111222222334456788999999988888887655 322222111111111 1124556667766
Q ss_pred HHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC---------C---hHhHHHHHHHHHhcCChHHHHHH
Q 005856 545 MMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII---------D---LASYEKVLDALLAAGKTLNAYSI 608 (673)
Q Consensus 545 ~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~---~~~~~~l~~~l~~~g~~~~A~~~ 608 (673)
..+....-+ +-.++.+|...|-..-|+.++++++...|.+ + ...| .+.-+|.++|+..-|.++
T Consensus 810 Y~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~-NL~LIY~~SGn~~lArqi 888 (895)
T KOG2076|consen 810 YKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY-NLHLIYKKSGNMQLARQI 888 (895)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh-hhhhhhccCCcHHHHHHH
Confidence 665322212 4468889999999999999999999875432 1 3344 577889999999999999
Q ss_pred HHHHH
Q 005856 609 LFKIM 613 (673)
Q Consensus 609 ~~~~~ 613 (673)
+++-+
T Consensus 889 l~kyl 893 (895)
T KOG2076|consen 889 LEKYL 893 (895)
T ss_pred HHhhc
Confidence 88743
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=1.6e-13 Score=131.27 Aligned_cols=496 Identities=11% Similarity=0.065 Sum_probs=392.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...|-..+ ...+.++|.-++.+..+. ++.+...|. +|.+..-|+.|..++.+..+. ++.+...|..-..
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 444444333 334556677777777764 234444444 456677889999999998776 6778888887777
Q ss_pred HHHhcCCHHHHHHHHHHH----HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 005856 170 GFFLSLKLETAIRFFEDM----KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP--TVISYTTMIKGYVA 243 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 243 (673)
.--..|+.+.+.+++++. ...|+..+...|..=...|-..|..-.+..+......-|+.. -..+|+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 777889999998888764 456888889999888888999999999999999988777542 24588888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHH
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (673)
.+.++-|..+|....+. .+.+...|......--..|..++...++++++.. .|.....|.....-+-..||...|..
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999988875 2445567777776667789999999999999886 45577788888888889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHH
Q 005856 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF 403 (673)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (673)
++..+.+.. +.+...|-..+.......+++.|..+|.+... ..|+...|..-+...-..+..++|.+++
T Consensus 606 il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~----------~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 606 ILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS----------ISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----------cCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 999998875 44777888888888999999999999999843 3467778887777777889999999999
Q ss_pred HHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 404 RQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
+..++..+.-...|..+.+.+-+.++.+.|...|..-.+. ++-.+-.|..+...--+.|++-.|..++++..-.+ +-+
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 9999998888889999999999999999999998876664 34456678888888888899999999999998654 456
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLS 562 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~ 562 (673)
...|...+..-.+.|+.+.|..+..++++.-+. +...|..-+....+.++-..+++.+++.. ..|. ...+...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHH
Confidence 778889999999999999999999999887433 56677777776666666556665555443 4455 345666677
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...+++.|.+.|.++++.++.. ...|.....-+...|.-++-.+++.++....
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 8889999999999999987653 3445556677788999999999999888654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.4e-14 Score=131.45 Aligned_cols=421 Identities=17% Similarity=0.217 Sum_probs=274.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHc--CCHHHH-HHHHHHHHhCC---------------
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRR--GRYMMA-KRYFNKMLSEG--------------- 156 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~A-~~~~~~~~~~~--------------- 156 (673)
+.++. ...+|.+.++.-+|+.|.+.|++.+...-..|...-+-. .++--| .+.|-.|.+.|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 44443 356788999999999999988888877766665543221 111111 11111111110
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 157 ----IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 157 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
.+.+..+|..+|.++++....+.|.+++++......+.+..+||.+|.+-+-..+ .+++.+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchH
Confidence 2446778999999999999999999999999888788899999999977543322 78899999988999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHC-------CCCCC
Q 005856 233 SYTTMIKGYVAVERADD----ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKVLREMVER-------YIPPK 300 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~ 300 (673)
|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..++..+++.++..+ +..++.++... -+.|.
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998764 56788899999999999999999999998888644 45555555442 24566
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS----IPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
+...|...+..|.+..+.+.|..+..-..... +.|+ ..-|..+....|+....+.-...|+.+ -.
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--------VP 426 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--------VP 426 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cc
Confidence 77888888899988889888888776654421 2232 223556677778888888888889888 44
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD-- 450 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 450 (673)
...-|+..+...++++....+.++-.-+++.++..-| ..+..... +++..+.+....|+..
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPER 490 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHH
Confidence 4455777777788888888888888888887777654 22222222 2222232222222211
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 005856 451 -AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV----KENLDLVAKI 525 (673)
Q Consensus 451 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 525 (673)
-+.....-++ ..-.+.....-.++.+.. ......+.++-.+.+.|..++|.+++..+.+.+- .|.......+
T Consensus 491 ~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 491 EQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 1111111111 011111122223344333 3334455555566777777777777777654421 2233333455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..-.+.+++..|+..++-+..
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 5556666677777777776654
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.2e-13 Score=125.35 Aligned_cols=438 Identities=9% Similarity=0.076 Sum_probs=307.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...|.....--..++++..|..+|++.+..+ ..+...|...+..=+++.....|..+|++.+..=+..| ..|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44455555555556677778888888887755 45666777777777788888888888888766422222 23334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 249 (673)
.--..|++..|.++|+.-.+. .|+...|.+.+..-.+.+.++.|..++++..- +.|++.+|.-..+.-.+.|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 444568888888888887765 67888888888888888888888888888765 35788888777777778888888
Q ss_pred HHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHH-
Q 005856 250 ALRIFDEMKSFDVKPNA----VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV- 324 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~- 324 (673)
+..+|+...+. -.|. ..+.++..--.+...++.|.-+|+-.++.-........|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 88888777653 1122 2333333333456667778888887777532221244555555555556665444433
Q ss_pred -------HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCc--hhhHHHHHH-------
Q 005856 325 -------LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME--ASSYNPMIQ------- 388 (673)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~------- 388 (673)
++.+++.+ +.|-.+|-..+..--..|+.+...++|++++... +|- ...|...|-
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---------pp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---------PPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---------CchhHHHHHHHHHHHHHHHHH
Confidence 33344433 5666777777777777888888889998886432 221 112222211
Q ss_pred -HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 389 -HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 389 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
.-....+++.+.++++..++.-|....||..+--+| .++.++..|.+++..+.. ..|...+|...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 113468999999999999987666666766654444 467899999999988774 5789999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+++....++++.++.+ +.+..+|......-...|+.+.|..+|+-+++.. .......|...+..-...|.++.|..+|
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999854 3466788888887788999999999999998873 2333456777777777899999999999
Q ss_pred HHHHhC
Q 005856 543 DLMMQS 548 (673)
Q Consensus 543 ~~~~~~ 548 (673)
+++++.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 999983
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.2e-13 Score=125.42 Aligned_cols=424 Identities=12% Similarity=0.119 Sum_probs=190.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
++++..|..+|+.++..+ ..+...|...+.+-.++...++|..+++..+..=+. -...|...+-.--..|+...|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHH
Confidence 344555555555555544 344455555555555555555555555555443211 12233333333334455555555
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR-G 191 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 191 (673)
+|++..+ ..|+..+|.+.|..=.+....+.|..+|++..- ++|++.+|-...+.--+.|....+..+++.+.+. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 5555554 245555555555555555555555555555543 3455555555555555555555555555555432 0
Q ss_pred C-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 005856 192 I-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRI--------FDEMKSF 260 (673)
Q Consensus 192 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~ 260 (673)
- ..+...+.+...--.++..++.|.-+|.-...+ ++.+ ...|..+...--+-|+.....+. ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 001222333333333444555555555554443 1111 12222222222222332221111 1222222
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCc-HHhHHHHHHH--------HhccCChHHHHHHHHHHHhC
Q 005856 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGV--------QCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~ 331 (673)
+ +-|-.+|-..++.....|+.+...++|+.++..- +|.. ...|...+-. -....|.+.+.+++...++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 1 3344455555555555555555555555555431 2211 1111111111 11234555555555555442
Q ss_pred CCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 005856 332 SIPTEAGHYGILIENF----CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (673)
Q Consensus 332 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (673)
+|....||..+--.| .++.+...|.+++..++ |.-|-..++...|..-.+.++++.+..++++.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333443332222 23344555555555442 122344445555555555555555555555555
Q ss_pred HcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
+-+|.+..+|......-...|+.+.|..+|..+.+.. .......|...|+.-...|.++.|..+++++++
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554431 111223344444444455555555555555554
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.1e-14 Score=127.84 Aligned_cols=462 Identities=14% Similarity=0.210 Sum_probs=297.8
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHhcCChHHH-HHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE--ILGRVGKLNHA-RCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
+.++|....+.-+|+.+...+ .+.+...-..+++ +|..+.++--| .+.|-.|.+.|-. +..+| +.|+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~ 194 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGA 194 (625)
T ss_pred HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------cccc
Confidence 345677777777888887766 5666665555443 23333333322 2333344443322 22222 4444
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+.+ -+|+.. +.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+
T Consensus 195 vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~E 263 (625)
T KOG4422|consen 195 VAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAE 263 (625)
T ss_pred HHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHH
Confidence 433 333332 46778999999999999999999999999987777889999999998654332 3788999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh--
Q 005856 187 MKSRGISLDVVTYNTMINGYNRFKKMDEA----EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD-ALRIFDEMKS-- 259 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~-- 259 (673)
|....+.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++..
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 99999999999999999999999988765 5677889999999999999999999999888754 4455555543
Q ss_pred --CCCC---C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCC--CcHHhHHHHHHHHhccCChHHHHHHHHH
Q 005856 260 --FDVK---P-NAVTYTALLPGLCDAGKMVEVQKVLREMVERY----IPP--KDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (673)
Q Consensus 260 --~~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (673)
..++ | |...|...+..|.+..+.+.|.++..-+.... +.| .....|..+....++....+.....|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 2 44567778888889999998888876654321 111 1233466677778888889999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 005856 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (673)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (673)
+.-.-.-|+..+...++++..-.+.++-.-+++.+++.-+. +++ -+.-++++..+.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-------------t~r-----------~~l~eeil~~L~ 479 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH-------------TFR-----------SDLREEILMLLA 479 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-------------hhh-----------HHHHHHHHHHHh
Confidence 98887788899999999998888999888888888854331 111 122233444444
Q ss_pred HcC-CCCHH---hHHHHHHHHHhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C
Q 005856 408 KKG-VLDPV---AFNNLIRGHSKEGNPDSAFE-IVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH-S 481 (673)
Q Consensus 408 ~~~-~~~~~---~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 481 (673)
... .|+.. -+.....-|+ -++.++.+ .-.++.+.. ......+.++-.+.+.|+.++|.+++.-+.+.+. .
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 333 22111 1222222111 12222222 223344433 3445666677777888888888888888754432 2
Q ss_pred Cchhh---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 482 PASSL---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 482 ~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
|-... ..-+++.....++...|..+++-|...+...-...-+.+...+.-...-.+|+.
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 32333 335556666778888888888888766544322233444444433333334443
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.6e-14 Score=130.58 Aligned_cols=460 Identities=10% Similarity=0.052 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh----hHHH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE-VLIESYGKKGIVQESVKIFDIMKQLGVERSVK----SYDA 131 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ 131 (673)
.++..+.+.|..+..+.+|+..++-+++...-|+..... .+...|.+...+.+|++.|.-....-...+.. ..+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 345556677777777888888888888777666655432 34456778888888888887776542122222 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH------------HHH
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV------------VTY 199 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~ 199 (673)
+...+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|..|......||. ...
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444566788888888888887764 566665555566666778888888888888764333322 222
Q ss_pred HHHHH-----HHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 200 NTMIN-----GYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTAL 272 (673)
Q Consensus 200 ~~ll~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (673)
+..+. -+-+.+ +.++++-.-..+..--+.|+... | .+-+++.++.-.-..+..+ .-. .-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la~d-lei-~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELAID-LEI-NK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhhhh-hhh-hH
Confidence 22111 111111 11111111111111111122110 0 0111111111110000000 001 11
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHH-Hhc-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 005856 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV-QCK-SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (673)
Q Consensus 273 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (673)
..-+.+.|+++.|+++++-+....... ...+-+.+... |.+ ..++..|..+-+..+..+ .-+......-...-...
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~-~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKT-ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchh-hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 224567788888888877765543222 11122222222 222 335666666666555432 12222222222223446
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
|++++|.+.|++++..+. .-...+-.+.-.+-..|+.++|+..|-++...-..+..+...+...|....+.
T Consensus 504 gd~dka~~~ykeal~nda---------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDA---------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CcHHHHHHHHHHHHcCch---------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 788888888888754321 01111222233455678888888888776655556777778888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
..|++++-+.... ++.|+.....|...|-+.|+-..|.+.+-+-.. -++.+..+...+..-|....-++.++.+|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888776654 566778888888888888888888777665544 35667777777777788888888888888876
Q ss_pred HHcCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHh
Q 005856 511 VEKGVKENLDLVAKIL-EALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.- +.|+..-|..++ .++.+.|++.+|+++|+.+..
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 43 467777776554 444567888888888887765
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.7e-14 Score=130.54 Aligned_cols=482 Identities=14% Similarity=0.099 Sum_probs=307.0
Q ss_pred CCChHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC----HH
Q 005856 20 QFDHNLVYNVLHG---AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD----ED 92 (673)
Q Consensus 20 ~~~~~~~~~~l~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 92 (673)
.++..++++...+ .....+|+..|+-+.+..-+|.....-..+..++.+.+++.+|+.+++..+++-+..+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 3444555554333 2356788888888877664444444445577888999999999999998777643333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--------
Q 005856 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTY-------- 164 (673)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------- 164 (673)
+.+.+...+.+.|++++|..-|+...+. .|+..+-..|+-.+.-.|+-++..+.|.+|+.....||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555666788999999999999998875 477665555555556679999999999999865323322211
Q ss_pred HHHHHHHHhcCC--------HHHHHHHHHH---HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 005856 165 NVMLWGFFLSLK--------LETAIRFFED---MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (673)
Q Consensus 165 ~~l~~~~~~~~~--------~~~a~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (673)
..|+.-..+... -..|.+..-. +..--+.|+... | .+-+.+.+..-... +.-...
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~--~la~dl 421 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHA--ELAIDL 421 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhh--hhhhhh
Confidence 112221111111 1111111111 111111111110 0 11112222111110 000001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHH
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT--ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (673)
--.-..-+.+.|+++.|+++++-+....-+.-...-+ +.+..+.--.++..|.++-+..+.. ..-++.+...-...
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNI 499 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCce
Confidence 1112344678888888888888776543222222222 2222222344677777777766553 22244555555555
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH
Q 005856 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC 391 (673)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (673)
....|++++|.+.+++.+..+..-....|+. .-.+-..|+.++|++.|-++...- ..+...+..+...|-
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il---------~nn~evl~qianiye 569 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL---------LNNAEVLVQIANIYE 569 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHH
Confidence 6678899999999998886543222233332 234567789999999887763321 235566777888888
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTA 471 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 471 (673)
...+...|++++.+....-|.+|.+...|...|-+.|+-..|.+.+-.--+. ++-+..+...|...|....-+++++.+
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 8899999999998888777889999999999999999999888876554443 556788888888889988889999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 005856 472 LDSMIEDGHSPASSLFRSVMESLF-EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (673)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (673)
|++..- +.|+..-|..++..|. +.|+++.|..+++..... ++.+..++.-+++.+...|
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 998753 6799999988887665 689999999999998776 4458888888888777766
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.70 E-value=8.3e-11 Score=112.95 Aligned_cols=322 Identities=12% Similarity=0.119 Sum_probs=204.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-----CcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh
Q 005856 278 DAGKMVEVQKVLREMVERYIPP-----KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE---AGHYGILIENFCK 349 (673)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 349 (673)
..|+..+....+.+++.. +.| .-...|..+...|-..|+++.|..+|++..+...+.- ..+|-.....=.+
T Consensus 359 ~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 456777777888887765 222 1345788888999999999999999999887543222 2334444445556
Q ss_pred cCCHHHHHHHHHHHHHchhccC---CCCCCCC------chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHH
Q 005856 350 AEMYDRAIKLLDKLVEKEIILR---PQSTLDM------EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (673)
..+++.|+++++++........ -+.+.++ +...|+..++.--..|-++....+++++.+....+|......
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6778888888887754321100 0001111 233456666666677888888999999998887777776666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhhHHHHHH--HH
Q 005856 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLR---KGEPADAKTALDSMIEDGHSPASSLFRSVME--SL 494 (673)
Q Consensus 421 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~ 494 (673)
...+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ....+.|..+|++.++ |-+|...-...++- .-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 66666677788888888877664334444 567777666553 2457889999999998 65554332222221 22
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHccCC
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD------SLLSVLSEKGK 566 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~~~~~~g~ 566 (673)
.+.|....|+.+++++... +++. ...|+..+.--...=-+.....+|++.++ .-|+.. .+.+.-.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhh
Confidence 3468888899999997664 3322 34455554433222233445667777777 345522 23444457899
Q ss_pred hHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHH
Q 005856 567 TIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 567 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
++.|..++..+.+. +|..+...|++.-.-=.+.|+-+-
T Consensus 674 idRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 99999999888775 455566667655555567888433
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=5.7e-10 Score=107.37 Aligned_cols=598 Identities=9% Similarity=0.055 Sum_probs=366.7
Q ss_pred HHhcCCC-hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---h-----cCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 005856 29 VLHGAKN-SEHALQFFRWVERAGLFNHDRETHLKMIEILG---R-----VGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (673)
Q Consensus 29 ~l~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 99 (673)
+-...|. ..+-.-+|+++.+.- |.+...|...++.-. + ...+......|+.....- ..=+.+|...+.
T Consensus 34 Ie~k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-HkmpRIwl~Ylq 110 (835)
T KOG2047|consen 34 IEHKAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMPRIWLDYLQ 110 (835)
T ss_pred HHHHccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHH
Confidence 3334443 445667788887763 777777777663221 1 111223333333221100 012346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 100 SYGKKGIVQESVKIFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (673)
...++|+.-.....|++.+.. .+......|...+......|-++-+..+|++.++. .| ..-.-.+..++..++++
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchH
Confidence 888999999999999987653 34445567888888888889999999999999764 33 33566788888999999
Q ss_pred HHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH
Q 005856 179 TAIRFFEDMKSRG------ISLDVVTYNTMINGYNRFKKMD---EAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERA 247 (673)
Q Consensus 179 ~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~ 247 (673)
+|.+.+...+... .+.+...|..+.+..++.-+.- ....+++.+... -+| ...|.+|...|++.|.+
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 9999998876431 2335556777766666554332 233444444432 233 35689999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------C------CHHHHHHHHHHHHHCC---------
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDA----------------G------KMVEVQKVLREMVERY--------- 296 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~--------- 296 (673)
++|..+|++.... ..+..-|..+.++|+.- + +++-...-|+.+...+
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 9999999887764 23344444444444321 1 1223334444443321
Q ss_pred -CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc
Q 005856 297 -IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE------AGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (673)
Q Consensus 297 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (673)
-.|.+...|..-+.. ..|+..+-...+.++.+. +.|. ...|..+...|-..|+.+.|..+|++..+...
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y- 418 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY- 418 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-
Confidence 122233344333332 356677777778777664 2221 23466778888899999999999999854321
Q ss_pred cCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-C-----------------CCHHhHHHHHHHHHhcCChh
Q 005856 370 LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-V-----------------LDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-----------------~~~~~~~~l~~~~~~~~~~~ 431 (673)
..+.--..+|..-...-.+..+++.|..+.+...... + .+...|...++.--..|-++
T Consensus 419 ----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 419 ----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred ----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 1111113345555555567788889988888775443 1 13345566666667778899
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHHHHHHHhc---cCCHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFE---DGRVQTASRVM 507 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~ 507 (673)
....+++.+.+..+. ++..-......+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+ .-..+.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999886554 4444444445556667788899998887765444543 356666655543 34689999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHc----cCChHHHHHHHHHHhcC
Q 005856 508 KSMVEKGVKENLDLVAKILEA--LLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSE----KGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~----~g~~~~A~~~~~~~~~~ 580 (673)
++.++ +.+|...-+..|+.+ --+.|-...|+.++++.... .++. ...+...|.+ .=-......+++++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99999 455543322223222 23568889999999987653 3333 2334444432 11223445677777776
Q ss_pred CCCCCh-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 581 DCIIDL-ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD----WKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 581 ~~~~~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
-+.... ......++.=.+.|..+.|..++....+-.++.. |.+|... -.++|+.+--..+.++=++++
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F---EvrHGnedT~keMLRikRsvq 724 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF---EVRHGNEDTYKEMLRIKRSVQ 724 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHH
Confidence 433332 2234566777789999999999999888665432 3333322 367888444444544444443
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.4e-12 Score=120.66 Aligned_cols=495 Identities=11% Similarity=0.018 Sum_probs=301.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+..-+..+++-+..+.++..|.-+-++....+ .++..---+++++.-.|++..|..+...-.- ...|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHH
Confidence 45556666666666677777777777776654 4444444566667777777777666654422 1345666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 249 (673)
++.+..+++.|..++...... -+...+-.-- + ...-..+.+. ++.. .......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~---~~~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE---TNPFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh---hcchhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHH
Confidence 777777777777777633100 0111000000 0 0000000000 0000 00000111111123334445555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 250 ALRIFDEMKSFDVKPNAVTYTALLPGLCDA-GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
|...|.+.... |...|..+....... -...+...++..+--......+......+.........-+.....-.+.
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 65555555432 333332222111100 0001111111110000000001122222221110000000000000001
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 005856 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK 408 (673)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (673)
.-.+...+........+-+...+++.+..++++..++.. ++....+..-|.++...|+..+-..+-.++.+
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD---------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111223455556666777888899999999999987654 23444555566788889999998888899999
Q ss_pred cCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 409 KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
..|..+.+|-+++..|...|+..+|++.|.+....+.. =...|..+.+.|.-.|..++|...+...-+.- +-....+.
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~L 384 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSL 384 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHH
Confidence 98999999999999999999999999999988764311 23579999999999999999999998877642 22222333
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---------CCCCCCHHHHHH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ---------SGSVPNFDSLLS 559 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~ 559 (673)
.+.--|.+.++...|.++|.++....+. |+..++.+.-.....+.+.+|..+|+..+. ....|.+..++.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 4455688899999999999999887544 677777787777888999999999987763 124555778999
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++.+.+++++|+..+++++...+. +..+|..++-+|...|+.+.|++.|.+.+-..
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999998755 67788899999999999999999999999764
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=7.4e-16 Score=145.36 Aligned_cols=225 Identities=18% Similarity=0.237 Sum_probs=59.8
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+...+...++.+.|...++++...++.++..+..++.. ...+++++|..++....+.. +++..+..++..+.+.+
T Consensus 48 ~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 48 RLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh
Confidence 3333344444555555555555554444444444444444 34455555555544443321 23344444444455555
Q ss_pred ChHHHHHHHHHHHHcC-CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDG-HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++++++..+. +......++..+...|+.+++.+++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5555555555544221 1233344444444445555555555555555554333 3444444555555555555544444
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 543 DLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 543 ~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
+..... +..|. +..++.++...|++++|+.+++++++.++. ++.....++++|...|+.++|.++.+++.
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred HHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444432 22233 233444444445555555555544443322 33334444555555555555555444433
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=3.5e-13 Score=133.90 Aligned_cols=287 Identities=13% Similarity=0.053 Sum_probs=150.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh--hHHHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEA-GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHL 390 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 390 (673)
..|+++.|.+.+....+.. |++ ..+-....+..+.|+++.|.+.+.++.+.. |+.. ........+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----------p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----------GNDNILVEIARTRIL 163 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------CcCchHHHHHHHHHH
Confidence 4567777777776665542 332 223334456666677777777777764321 2221 222235566
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHH---HHHhcCChH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYI-CLIE---SYLRKGEPA 466 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~ 466 (673)
...|+++.|...++.+.+..|.++.+...+...+...|++++|.+.+..+.+.++. +...+. .-.. .....+..+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777777777777777777788888887777777776543 222221 1111 112222222
Q ss_pred HHHHHHHHHHHcCC---CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGH---SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI-LEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 542 (673)
++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..++.....+..+ .......++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 22333333333211 124555556666666666666666666666665443221111111 11112234555555555
Q ss_pred HHHHh-CCCCC--C-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 543 DLMMQ-SGSVP--N-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 543 ~~~~~-~~~~p--~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
++..+ .+..| . ..+++..+.+.|++++|.++|+++......|++..+.+++..+.+.|+.++|.+++++.+
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55444 22223 1 123455555566666666666632222223344445556666666666666666665544
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.5e-12 Score=119.17 Aligned_cols=406 Identities=14% Similarity=0.056 Sum_probs=252.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRF 209 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 209 (673)
...-|.++|.+++|++.|.+.++. .|+ +..|.....+|...|+++++.+--...++. .|+ +..+..-..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 445677888999999999988875 566 777888888888889999988888887776 333 45555666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcC--------
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDA-------- 279 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~-------- 279 (673)
|++++|+.=..-..-.+.--|..+--.+=+.+-+.+ ...+.+- +.+. -+.|+.....+.+..+...
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~---~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEK---LKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHh---hcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 887776543222211110001111111111111111 1111111 1111 1345555545444433211
Q ss_pred CC-----HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCC---CCCC---------hhhHHH
Q 005856 280 GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS---IPTE---------AGHYGI 342 (673)
Q Consensus 280 ~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~---------~~~~~~ 342 (673)
++ ..++.+.+..... ..+..|.+.+.+-.... ...+ ..+...
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~---------------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLE---------------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred CccchhhHHHHHHHHHhhCc---------------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 00 1111111111100 01222222222111100 0000 111222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
-...+.-.|+.-.|..-|+..+... + .+...|-.+...|....+.++....|....+.++.++.+|..-.+
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~----~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLD----P-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcC----c-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 2234455788888888888886543 1 122237777788899999999999999999999889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (673)
++.-.+++++|..-|++...... -+...|..+..+..+.+.++++...|++..+ .++..+..|+.....+...++++.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHH
Confidence 99989999999999999988642 2566777777777788899999999999887 356667788888899999999999
Q ss_pred HHHHHHHHHHcCCC-----CCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHH
Q 005856 503 ASRVMKSMVEKGVK-----ENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 503 a~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~ 571 (673)
|.+.|+..++..+. .+...+ ..++..-. .+++..|+.++++..+ +.|. +.+++....+.|+.++|+
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998887333 222222 22222222 3788999999999988 6665 456777777899999999
Q ss_pred HHHHHHhcC
Q 005856 572 KLLDFCLGR 580 (673)
Q Consensus 572 ~~~~~~~~~ 580 (673)
++|+++...
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 999988765
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.4e-11 Score=108.95 Aligned_cols=329 Identities=12% Similarity=0.065 Sum_probs=220.3
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HH
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY--TA 271 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 271 (673)
.|...+-.....+.+.|....|+..|...... -+..|.+.+....-..+.+.+. .... |...|..-+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHH
Confidence 35444444444566778888888888887754 2344444444433333333222 2221 222222222 22
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHh
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTEAGHYGILIENFCK 349 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 349 (673)
+..++-...+.+++.+-.......|.+. +...-+....+.....|+++|+.+|+++.+.+. -.|..+|+.++ |.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 3345555667778887777777777654 777777777777888899999999999888742 12445555554 233
Q ss_pred cCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC
Q 005856 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (673)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (673)
..+.. +.++..-+- .-. +--+.|...+.+.|+-.++.++|...|++..+.+|....+|+.++.-|....+
T Consensus 310 ~~~sk--Ls~LA~~v~------~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVS------NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred hhhHH--HHHHHHHHH------Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 22211 111111111 011 12334677777888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
...|.+-++.+.+-+ +.|-..|..|.++|.-.+.+.-|+-.|++..+. .+.|...|.++...|.+.++.++|++.|+.
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888888864 347788888888888888888888888888764 245677888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 510 MVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+...|-. +...+..++..|-+.++..+|...+++.++
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8877543 556777788888888888888888776665
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.2e-12 Score=119.53 Aligned_cols=413 Identities=15% Similarity=0.119 Sum_probs=268.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 005856 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYTTMIKGYV 242 (673)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 242 (673)
....+-|.+.|.+++|++++...... .|+ ...|.....+|...|+|+++.+--...++. .|+ +..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34456677899999999999999987 566 778888999999999999999888887775 344 345666667778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCC--CcHHhHHHHHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMV--------EVQKVLREMVERYIPP--KDNSVFMKLLGVQ 312 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 312 (673)
..|++++|+.=.. ..+++..+....-.. .++.-.++-...+.+| ++..........+
T Consensus 195 ~lg~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 8888887754222 122222222111111 1222222222211122 1333333322222
Q ss_pred hccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHHHchhccCCCCCCCCch------h
Q 005856 313 CKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK--A---EMYDRAIKLLDKLVEKEIILRPQSTLDMEA------S 381 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~ 381 (673)
... .......+.......+..++.. . ..+..|...+.+-........... ..|. .
T Consensus 262 ~~~------------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~le~~A~ 327 (606)
T KOG0547|consen 262 HAD------------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAELEYMAE 327 (606)
T ss_pred ccc------------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhHHHHHH
Confidence 110 0000000111111122211111 1 124444444433322111000000 0111 1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
+.......+.-.|+.-.|..-|+..+...+.+...|..+..+|....+.++....|..+.+.+.. ++.+|..-...+.-
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 12222223344689999999999999988666666888899999999999999999999987543 77788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
.+++++|..-|++.+.. .|+ ...+..+..+..+.+.+++++..|++..++ ++..++.|+.....+...++++.|++
T Consensus 407 L~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 89999999999999874 343 455666666677899999999999999987 44467889999999999999999999
Q ss_pred HHHHHHhCCCCCC-------HHH----HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 541 RIDLMMQSGSVPN-------FDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 541 ~~~~~~~~~~~p~-------~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
.|+...+ +.|. ... .+-.+.=.+++..|..++.++++.+|+.+ ..|..|+....+.|+.++|+++|
T Consensus 484 ~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 484 QYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHH
Confidence 9998887 4444 111 11112235899999999999999987744 46789999999999999999999
Q ss_pred HHHHHc
Q 005856 610 FKIMEK 615 (673)
Q Consensus 610 ~~~~~~ 615 (673)
++...-
T Consensus 561 Eksa~l 566 (606)
T KOG0547|consen 561 EKSAQL 566 (606)
T ss_pred HHHHHH
Confidence 997754
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.9e-11 Score=109.11 Aligned_cols=384 Identities=14% Similarity=0.076 Sum_probs=269.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HH-HH
Q 005856 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VI-SY 234 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~ 234 (673)
...|...+-.....+-..|....|.+.|...... .+-....|..|.... .+.+.+..+ .. |.+.| .. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHH
Confidence 3445544444444556778899999999888765 233444554444332 333333222 21 11212 11 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCcHHhHHHHHHHHh
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY-IPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 313 (673)
-.+..++-...+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+.. ...+|..+|..++-+-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 23445666667888888888888888876666666666666778899999999999998862 11235566666554432
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHcc
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (673)
..... ..+-+-...--+--+.|.-.+...|.-.++.++|...|+++++-+ + .....|+.+.+-|...
T Consensus 311 ~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----p-----~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 311 DKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN----P-----KYLSAWTLMGHEYVEM 377 (559)
T ss_pred hhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----c-----chhHHHHHhhHHHHHh
Confidence 22111 111111111013344566677888888999999999999997654 2 2455788899999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.+...|.+.++.+.+..|.|...|-.|+++|.-.+.+.=|+-.|+++.... +.|+..|.+|..+|.+.++.++|.+.|.
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999863 4589999999999999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.....| ..+...+..+...+.+.++..+|...|++-++. |...+ ....--|..-+.+.+++++|..+......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999865 446688999999999999999999999987763 33322 22223355666788899988877665544
Q ss_pred CCCCCCHHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 548 SGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 548 ~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
. .-..++|..+++....
T Consensus 536 ~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G---------------ETECEEAKALLREIRK 552 (559)
T ss_pred C---------------CchHHHHHHHHHHHHH
Confidence 1 2234666666665544
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.1e-12 Score=129.59 Aligned_cols=281 Identities=16% Similarity=0.120 Sum_probs=176.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHH--HHHHHHH
Q 005856 315 SGHLNAAADVLKAMIRLSIPTEAGHYGIL-IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN--PMIQHLC 391 (673)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 391 (673)
.|+++.|.+.+....+.. +.+..+..+ ..+..+.|+++.|...+.++.+.. |+..... .....+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----------~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----------DNDQLPVEITRVRIQL 164 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------CcchHHHHHHHHHHHH
Confidence 466666666665544431 122222222 334467777777777777774422 2322222 2245667
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcCC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD-------AYICLIESYLRKGE 464 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 464 (673)
..|+++.|...++.+.+..|.++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77888888888888888878888888888888888888888888888888765442221 22233333333444
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (673)
.+...++|+...+. .+.+......+...+...|+.++|.+++++..+.. ++.... ++.+....++++++++.+++
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 45555555554331 23456666777777888888888888887777743 233322 23333455778888888877
Q ss_pred HHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 545 MMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 545 ~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..+. +..|. ...++..+...+++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+.+++.+.
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7762 22222 2345666667888888888888877764 4556666778888888888888888887765
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.3e-12 Score=127.24 Aligned_cols=285 Identities=11% Similarity=0.104 Sum_probs=213.3
Q ss_pred hcCChHHHHHHHhhcccCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHH--HHHHHHHHcCCHHH
Q 005856 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVL-IESYGKKGIVQESVKIFDIMKQLGVERSVKSYD--ALFKLILRRGRYMM 144 (673)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 144 (673)
..|+++.|.+.+....+.+ +++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 4689999998888766542 123333333 33447889999999999998874 35543332 33567888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 217 (673)
|...++++.+.. +-++..+..+...|...|++++|..++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999988764 336677788888888999999999999999887654222 233444555555566677777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
+++.+... .+.+......+...+...|+.++|..++++..+. .|+.... ++.+....++.+.+.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 77776543 3447778888899999999999999999888874 5555322 233344568899999999988876
Q ss_pred CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
.|+|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778888999999999999999999999999885 688888888999999999999999999887653
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.1e-13 Score=133.39 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=222.2
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhc
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 427 (673)
-+..+|+..|... +.... -+......+..+|...+++++|..+|+.+.+.. ..+..+|.+.+..+-+
T Consensus 333 y~~~~A~~~~~kl--------p~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~- 402 (638)
T KOG1126|consen 333 YNCREALNLFEKL--------PSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD- 402 (638)
T ss_pred HHHHHHHHHHHhh--------HHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-
Confidence 3567888888885 32222 223566778899999999999999999999887 4577788887765533
Q ss_pred CChhHHHHHH-HHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHhccCCHHHHHH
Q 005856 428 GNPDSAFEIV-KIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 428 ~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
+-++..+ +.+.+. -+..+.+|.++..+|.-+++++.|++.|++.+.. .| ...+|+.+..-+.....+|.|..
T Consensus 403 ---~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 ---EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred ---hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 1222222 334443 2447899999999999999999999999999873 45 45677777777888999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.|+.++..++. +-..|..+...|.+.++++.|.-.|+++.+ +.|... .++..+.+.|+.++|+.++++|...+
T Consensus 477 ~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 477 SFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 99999887555 566778889999999999999999999998 888844 35556668999999999999999998
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcccc
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGS 655 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 655 (673)
+......| ..+..|...|++++|+..++++.+.- +.+...+..++..|...|+.+.|..=.-.+...+++.+
T Consensus 554 ~kn~l~~~-~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 554 PKNPLCKY-HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CCCchhHH-HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 87655555 78999999999999999999987653 44677777899999999999999654444444554443
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.7e-15 Score=141.57 Aligned_cols=259 Identities=14% Similarity=0.129 Sum_probs=61.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
..++...|+++.|+++++........+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444555555555555332221101233344444444444455555555555555443322 33334444433 34455
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (673)
+++|..++....+.. +++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555554443321 333444444445555555555555555543321 12334444444444555555555555555
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
+..+..+. |....+.++..+...|+.+++.++++...... +.|...+..+..++...|+.++|+.+|++..... +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 55544221 34444445555555555555444444444331 2233344444555555555555555555544421 224
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 266 AVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 266 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
+.....+..++...|+.++|.++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444555555555555444443
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.3e-12 Score=128.09 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=198.0
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCH--hhHHHHHHHHHHcCCHHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSV--KSYDALFKLILRRGRYMM 144 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~ 144 (673)
...|+++.|.+.+....+.... +...+-....++...|+++.|...+.+..+.. |+. ...-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4678888888888877765432 22333344566777788888888888876643 333 233334677778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHH-HHHHHH---HcCCChHHHHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYN-TMINGY---NRFKKMDEAEKLFA 220 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 220 (673)
|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887764 335667777888888888888888888888877644 322221 111111 22222222333444
Q ss_pred HHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 221 EMKEKN---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT---YTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 221 ~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 443321 1136777888888888899999999988888875 344432 11122222445777888888888877
Q ss_pred CCCCCCcH--HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 295 RYIPPKDN--SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 295 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
. .|+++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5 56677 77888899999999999999999954443346888888899999999999999999998876543
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.8e-11 Score=106.79 Aligned_cols=250 Identities=10% Similarity=0.035 Sum_probs=142.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc-------CChhHHHHHHHHHHhCCCCCC-HHhHHHHHH
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE-------GNPDSAFEIVKIMGRRGVPRD-ADAYICLIE 457 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 457 (673)
++-.|.+.+++.+|..+.+++. |.+|.-|..-...+... ....-|.+.|+..-..+..-| ..--.++..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 4444566677776666554432 33333333222223332 234455566655544333222 223445566
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
++.-..++++.+..+..+...-...|... ..+..+.+..|++.+|.++|-.+....++........++++|.+.|+++-
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 66667778888888888776433333333 35677888999999999999888776666344444677889999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 538 ALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|++++-++...+-.-. ...+...|.+.+.+--|-+.|+..-..+| +++.| .|+-....-++..+....
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP--~pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP--TPENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC--Ccccc---------CCccchHHHHHHHHHcCC
Confidence 9887644322111101 12345556678888777777775555544 45555 455555556666655443
Q ss_pred CCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 617 GVTD-WKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 617 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
..|- .......+..++..++ -.++.+.+.++++.
T Consensus 516 ~~~~p~~~~rEVvhllr~~~n-sq~E~mikvvrkwa 550 (557)
T KOG3785|consen 516 TDPIPISQMREVVHLLRMKPN-SQCEFMIKVVRKWA 550 (557)
T ss_pred CCCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3222 2233334444444444 34555555555543
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.3e-11 Score=112.28 Aligned_cols=267 Identities=12% Similarity=0.036 Sum_probs=121.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
-..-+...+++.+..++.+.+.+. .|.....+..-+..+...|+...-..+-.++.+. .|..+.+|-.+.-.|...|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 333344444444444444444442 2223333333333444444444444433344333 1333334444444444444
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
+..+|.+.|.+....+ . .=...|-....+|+-.|..+.|...+..+.+.-+.....+.-+..-|.+.++++
T Consensus 327 k~seARry~SKat~lD------~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLD------P---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred CcHHHHHHHHHHhhcC------c---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 4444444444442211 0 011134444444444444444444444444433222222233333444444555
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CchhhHHHHHHHHhccCCHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--GHS----PASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
-|.++|.++... .+.|+...+-+.-.....+.+.+|...|+..... ... --..+++.+..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 555555444433 1223444444444444444445555444444311 000 012345556666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
.+++.+...++ +..++..++..|...|+++.|++.|.+.+. +.|+.
T Consensus 477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 66666666444 566666666666666666666666666555 55554
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.6e-13 Score=130.87 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=179.1
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCH
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (673)
+..+|+..|..+... +.....+...+..+|...+++++|.++|+.+.+.. .-..-+..+|++.+..+- +.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p~rv~~meiyST~LWHLq---~~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------PYRVKGMEIYSTTLWHLQ---DE 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhHHHHHHHHHH---hh
Confidence 345666667664443 33344556666777777777777777777765432 111234556666554332 22
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
-+--.+-+.+.+..+..|.+|.++..+|.-+++.+.|++.|+++.+.+ | ...+|+.+.+-+.....++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 222233344555556777777777777777777777777777777642 3 5567777777777777777777777776
Q ss_pred HHcCCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-
Q 005856 476 IEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN- 553 (673)
Q Consensus 476 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 553 (673)
+.. .| +...|..+...|.+.++++.|.-.|+++.+.++. +......+...+.+.|+.|+|+++++++.. ..|.
T Consensus 482 l~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 482 LGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred hcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 641 12 2334555566677777777777777777776655 555566677777777777777777777776 3332
Q ss_pred ---HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 554 ---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 554 ---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
-..-+..+...+++++|+..+++..+.-|+ +...+..++..|-+.|+.+.|+.-+.=+.+-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 233555666777777777777776665443 3444556777777778877777777766654
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.4e-11 Score=107.11 Aligned_cols=454 Identities=11% Similarity=0.084 Sum_probs=285.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
+.-+...+++..|+.+++.....+. .-...+-.-+..++.+.|++++|...+..+...+ .++...+..+..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4456677899999999988875541 1222233335567889999999999999877643 4577788888888888899
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+.+|..+-.... .++-.-..+...--+.++-++-..+.+.+... ..--.++.......-.+.+|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988876653 23333334445555677777777766666432 12223445545555678999999999
Q ss_pred HHhCCCCcCHHHHHHHH-HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 187 MKSRGISLDVVTYNTMI-NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
.... .|+-...|..+ -+|.+..-++-+.+++.-..+. ++.++...|..+....+.=+-..|..-.+++.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 8876 34544445443 4567778788888888887764 34455566666555555434344444455554443111
Q ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhH
Q 005856 266 AVTYTALLPGLCD-----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (673)
Q Consensus 266 ~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (673)
|. .+.-+++ -.+-+.|.+++-.+.+. -+.+...++-.|.+.++..+|..+.+++. |.++.-|
T Consensus 253 ---~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 253 ---YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred ---ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 11 1111222 23456777777766653 23455667778899999999999888764 2233222
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHchhccCCCCCCCCchh-hHHHHHHHHHccCCHhHHHHHHHHHHHcCCC
Q 005856 341 GILIENFCKAEM-------YDRAIKLLDKLVEKEIILRPQSTLDMEAS-SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL 412 (673)
Q Consensus 341 ~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (673)
-.-.-.+...|+ ..-|.+.|.-. ..++...|.. .-.++..++.-..++++.+..+..+..-...
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlV--------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLV--------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHh--------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222333332 34455555544 3333333322 2345555666667888888888887776654
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH-HHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF-RSV 490 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l 490 (673)
|...-..+.++++..|++.+|.++|-.+....++ |..+| ..|.++|.+++.++-|..++-++ .-+.+..++ ..+
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLI 467 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHH
Confidence 5555556889999999999999999887765444 44555 55677899999999887665544 333333333 334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
..-|.+++.+--|.+.|+.+...++ +++.|.
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP--~pEnWe 498 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP--TPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC--CccccC
Confidence 4568888998888889988877654 455553
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.1e-11 Score=108.94 Aligned_cols=221 Identities=13% Similarity=0.118 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW---DEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 111 (673)
+++.|.++|-.+.+.+ +-+..+...+.+.|.+.|..++|+++.+.+.++.--+ .......+..-|...|-+|.|.
T Consensus 50 Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 50 QPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4445555555554433 3344444445555555555555555555544431000 0112223334444445555555
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH----TYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
.+|..+.+.| .--....-.|+..|-...+|++|+++-+++.+.+.++... .|.-+...+....+++.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555544322 1222333444444545555555555555444433222211 2222333333334444444444444
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
.+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 443221 22222333344444444444444444444433222222334444444444444444444444443
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=8.6e-12 Score=109.59 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--cHHhHHHHHHHHhccCChHHHH
Q 005856 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLNAAA 322 (673)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 322 (673)
++.++|.+.|-+|.+.. +.+..+-.++.+.|.+.|..+.|+++.+.+.++.--+. ...+...|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 55566666666666532 22333444555666666666666666666665421110 1123445556677777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHH
Q 005856 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIF 402 (673)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 402 (673)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++...+ +......-...|.-+...+....+.+.|...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~----~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG----GQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC----CccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7777776643 2334456677777777888888888777775543 1111111122455566666667888999999
Q ss_pred HHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005856 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (673)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 482 (673)
+++..+.++....+-..+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.+.. +
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 99999888888888888899999999999999999999988666566788889999999999999999999988754 3
Q ss_pred chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 005856 483 ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQ 547 (673)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 547 (673)
.......+........-.+.|...+.+-+.. +|+...+..++..-.. .|.+.+.+.+++.|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3344444444444445556676666665555 5678888888776553 3456667777777765
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=2.6e-09 Score=103.30 Aligned_cols=526 Identities=14% Similarity=0.096 Sum_probs=306.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 111 (673)
..+++...+++.+.+++.. |-...+....+-.+...|+-++|.......++.++. +..+|..+.-.+....++++|.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 4679999999999999854 666677777776777889999999999888876654 7788888888888889999999
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
+.|......+ +.|...|.-+.-.-++.|+++.......++.+.. +.....|..+..++.-.|+...|..+++...+..
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 4566777777766778889998888888887752 3355678888888889999999999999988764
Q ss_pred -CCcCHHHHHHHH------HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005856 192 -ISLDVVTYNTMI------NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (673)
Q Consensus 192 -~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (673)
..|+...+.... ....+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..+... .|
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 245655554332 3345678888888877665432 1112222344567788899999999999999886 46
Q ss_pred CHHHHHHHHH-HHHcCCCHHHHH-HHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHH
Q 005856 265 NAVTYTALLP-GLCDAGKMVEVQ-KVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (673)
Q Consensus 265 ~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (673)
|..-|...+. ++.+..+.-++. .+|....+. .|........=+.......-.+....++....+.|+++- +..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 6666555544 443333333343 666665443 221111111112222222233445566677777776553 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCC----------CCCCchhhH--HHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQS----------TLDMEASSY--NPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
+...|-.-...+ ++++.+..-....... .-+|....| ..++..+-+.|+++.|...++....+.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 443332222111 2222211100000000 012333222 234445555666666666666666555
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.-.+....+.++.++|.++...+.+.|. +....
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~--- 475 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNN--- 475 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhh---
Confidence 5445555555566666666666666666665542 23443333444555555666666665555544432 11100
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVA--KILEALLMRGHVEEALGRIDLMMQS--GSVPNFDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~~~~~~g~ 566 (673)
+..| .-.|. .-+.+|.+.|++-.|++-+..+-.. .+.-+...+..-|.+.|-
T Consensus 476 ----------------L~~m--------qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~t 531 (700)
T KOG1156|consen 476 ----------------LAEM--------QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGT 531 (700)
T ss_pred ----------------HHHh--------hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCc
Confidence 0000 00111 1234555666666666555444431 123333445556667777
Q ss_pred hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 567 TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 567 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+..=+++++-.-..- +...|.. -...|+++|-++.+.+
T Consensus 532 lrsYv~ll~~~d~L~---~~p~y~~---------Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 532 LRSYVELLEWEDNLR---SSPYYLR---------AAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHHHHHHhhc---cChHHHH---------HHHHHHHHHHHHhcCc
Confidence 666666665332221 1112211 1345778888877765
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=5.2e-11 Score=118.53 Aligned_cols=539 Identities=15% Similarity=0.094 Sum_probs=290.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHH
Q 005856 52 FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (673)
Q Consensus 52 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 131 (673)
..|+..+|..++.-|+..|+.+.|- +|.-|.-.+.+.+...|+.++.++...++.+.+. .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 6777778888888888888877777 7777776666677777788877777777776665 477777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCcCHHHHHHHHHHHHcCC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK-SRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
|..+|...||... |+...+ -...+...+...|.-.....++..+. ..+.-||... .+......|
T Consensus 89 Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHH
Confidence 8888888877655 222211 11222333334444333333333321 1122334332 222333445
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 211 KMDEAEKLFAEMKEKN-IEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 211 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
-++.+.+++..+.... ..|.. .+++-+.... .+++-..+.+...+ .|++.+|..++.+-...|+.+.|..+
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 6666666665544221 11111 1233333322 23333333333333 58888999999988889999999999
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
+.+|.+.|++. +...|-.++.+ .++...+..++.-|...|+.|+..|+...+..+..+|....+
T Consensus 227 l~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~------------ 290 (1088)
T KOG4318|consen 227 LYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG------------ 290 (1088)
T ss_pred HHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc------------
Confidence 99999998877 55545454444 778888888888899999999999988877777665542111
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHH------------HHHHcC-CCCHHhHHHHHHHHHhcCChhHHHH
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFR------------QLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFE 435 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 435 (673)
+.+ .+....+++-+.+-+-.| ..|.+.++ +..-.+ .....+|.. ..-...+|.-++..+
T Consensus 291 ----~e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 ----EEG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQ 362 (1088)
T ss_pred ----ccc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHH
Confidence 111 122223333333222233 12221111 111112 111122222 222233677777777
Q ss_pred HHHHHHhC--CCCC-CHHhHHHHHHHHHhcCChHHHHHHHH--HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 436 IVKIMGRR--GVPR-DADAYICLIESYLRKGEPADAKTALD--SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 436 ~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
+-..+... ...+ ++..|..++.-|.+.-+..-...++. +.+... .+....-.+....... +...+.+-+...
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~L 439 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGL 439 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhh
Confidence 76666531 1111 33445444444443222111111111 111110 0000000111111100 111111111111
Q ss_pred HH----cCCCC-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 511 VE----KGVKE-------NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 511 ~~----~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
.. +...| -...-+.++..+++.-+..+++..-+.....-+.--+..++..+....+.+.|....++...
T Consensus 440 ss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 440 SSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred hHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 10 01111 11222344555555555566665544333322222356778888888888888888887665
Q ss_pred CC--CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 580 RD--CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 580 ~~--~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
.. ...+...+..+.+.+.+.+...++.++++++.+.-.. ....+..+++.+....|+.+.-.++.+.+-+.+
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 43 2234566778889999999999999999988874322 235666678888888888887777777776655
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2.7e-11 Score=110.06 Aligned_cols=284 Identities=16% Similarity=0.118 Sum_probs=201.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC
Q 005856 315 SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG 394 (673)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (673)
.|++..|++...+..+.+-. ....|..-+.+-.+.|+.+.+-.++.++.+. ...++....-+........|
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--------~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--------AGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--------CCCchHHHHHHHHHHHHhCC
Confidence 57777777777776665422 2334445556667778888888887777332 22344445556666777888
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYICLIESYLRKGEPAD 467 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 467 (673)
+++.|..-..++.+..+.++.+.....++|.+.|++.+...++..+.+.+.-.+. .+|+.+++-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 8888888888888888888888999999999999999999999998887765554 356666665555555555
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
-...|+..-. ..+.++....+++.-+.++|+.++|.++..+..+.+.+|+. ..+ ....+-+++..=++..+.-.+
T Consensus 248 L~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHH
Confidence 5556665543 23445566667777888889999999998888888776652 212 233456666666666664443
Q ss_pred -CCCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 548 -SGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 548 -~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+..|. +.+++..|.+.+.+.+|...|+.+++. .|+...|..+++++.+.|+..+|.+..++.+.
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 566676 456777888888899999998888776 45677788888889999999998888888764
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=1.1e-09 Score=105.75 Aligned_cols=444 Identities=13% Similarity=0.087 Sum_probs=276.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252 (673)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 252 (673)
..+++...++..+.+.+. .+-...+.....-.+...|+.++|......-....+ .+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 556666777777666663 222444544444445566777777777766655433 256777777777777777888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 005856 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332 (673)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 332 (673)
.|......+ +-|...+.-+.-.-.+.++++........+.+. .|.....|..++.++.-.|+...|..++++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887777654 445555555554445667777766666666653 44466677777777777888888888887776654
Q ss_pred -CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh-HHHHHHHHHccCCHhHHHHHHH
Q 005856 333 -IPTEAGHYGILI------ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS-YNPMIQHLCHNGQTGKAEIFFR 404 (673)
Q Consensus 333 -~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 404 (673)
-.|+...+.... ....+.|.+++|.+.+....... .|... -..-...+.+.+++++|..++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI----------VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 245555444332 23456688888887776652211 12222 2344566788999999999999
Q ss_pred HHHHcCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 405 QLMKKGVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRR---GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH 480 (673)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 480 (673)
.+....|.+...|..+..++.+- +..+....+|....+. .-.|.....+. .....-.+..-.++..+.+.|+
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCC
Confidence 99999888888888888888633 3333333667666553 11121111111 1112222344566667777787
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc--C------------CCCCHHHHH--HHHHHHHcCCCHHHHHHHHHH
Q 005856 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--G------------VKENLDLVA--KILEALLMRGHVEEALGRIDL 544 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~------------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~ 544 (673)
++-...+ ...|-.....+-..++...+... | -+|....|. .++..+-..|+++.|..+++.
T Consensus 320 p~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6543333 33333222222111221121111 1 134544443 566777899999999999999
Q ss_pred HHhCCCCCCHHHHH----HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--
Q 005856 545 MMQSGSVPNFDSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-- 618 (673)
Q Consensus 545 ~~~~~~~p~~~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-- 618 (673)
... ..|+...+. .++.++|++++|..+++.+.+.+ .+|...-..-+.-..++.+.++|.+++.+....+..
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 887 778855444 77889999999999999888875 234433347788888999999999999998876631
Q ss_pred CCHH----HHH--HHHHHHHhcCCcchHH
Q 005856 619 TDWK----SSD--KLIAGLNQEGNTKQAD 641 (673)
Q Consensus 619 ~~~~----~~~--~l~~~~~~~g~~~~a~ 641 (673)
.+.. .|- .-+.+|...|++-+|.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 1111 111 1455677777777773
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.1e-10 Score=106.07 Aligned_cols=288 Identities=13% Similarity=0.155 Sum_probs=229.0
Q ss_pred hcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHH
Q 005856 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147 (673)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (673)
..|+|.+|++.+.+-.+.+.. ....|..-..+-...|+.+.+-.++.++.+..-.++....-.........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 568999999999987776544 3445555566777889999999999999886334666677777788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 005856 148 YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEKLFA 220 (673)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 220 (673)
-.+++.+.+. .++.......++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9998888753 35677788889999999999999999999998865443 467788887777777777666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 221 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
..... .+.++..-.+++.-+.+.|+.++|.++..+..+.+-.|+ ...+-.+.+.++...-++..+.-.+. .|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCC
Confidence 76543 344566677888889999999999999999888765555 22223456778888888888887775 455
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
++..+..+...|.+.+.+.+|...|+...+. .|+..+|..+..+|.+.|+...|.+++++.+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8899999999999999999999999988775 789999999999999999999999999887743
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=3e-10 Score=113.30 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=162.9
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (673)
|..+++..++..+...|+.+.|- +|..|.-.+ .|.....++.++......++.+.+. .|.+.+|..+
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 33456777788888899999998 999887766 6788888999988888888876655 4788999999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----HcCCccCHhh--------------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 98 IESYGKKGIVQE---SVKIFDIMK----QLGVERSVKS--------------YDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 98 i~~~~~~~~~~~---a~~~~~~~~----~~g~~~~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
..+|...||... +.+.+..+. ..|+.....- -...+....-.|-++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998754 333222221 1222111111 1112222333455555555554442211
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005856 157 IEPTRHTYNVMLWGFFLS-LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (673)
.. .+ +..+++-+... ..+++-..+.....+ .|+..+|..++++....|+.+.|..++.+|.+.|++.+..-|-
T Consensus 170 ~~-~p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WN-AP--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc-ch--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 00 11 11124433322 233443333333333 5799999999999999999999999999999999887776666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 236 TMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66655 78888888999999999999999999988877777555
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-09 Score=107.22 Aligned_cols=434 Identities=13% Similarity=0.074 Sum_probs=264.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHH
Q 005856 156 GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISY 234 (673)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 234 (673)
.+.-+...|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++........|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567788888888889999999999999998876443 678899999999999999999999988766533343 3333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHh--CCC--CCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHCCCC
Q 005856 235 TTMIKGYV-AVERADDALRIFDEMKS--FDV--KPNAVTYTALLPGLCDA-----------GKMVEVQKVLREMVERYIP 298 (673)
Q Consensus 235 ~~ll~~~~-~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 298 (673)
-..-..|. +.+..++++++-.+... .+. ......|..+.-+|... ....++.+.+++.++. .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--d 474 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--D 474 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--C
Confidence 33334444 44677777777766654 111 12233444444444321 2245677888888775 5
Q ss_pred CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
|.|+.+...+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..++... .
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----~----- 545 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----D----- 545 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----h-----
Confidence 6688888888888999999999999999999987678889999999999999999999999999876542 1
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLI 456 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~ 456 (673)
|-.....-+..-...++.+++......+...-..-+.+ ...++-....+....+.-. ...-...++..+.
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 00011111112223456666655544443321000000 0011111122222221110 1111122222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC--c------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSP--A------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...... ...+..-.. +......| + ...|......+.+.++.++|...+.++....+. ....|......
T Consensus 618 ~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLL 693 (799)
T ss_pred HHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHH
Confidence 211111 111100000 11111111 1 224445556667777777777777777665332 45556666677
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH--HHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK--LLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
+...|...+|.+.|..... +.|+ ...++..+.+.|+..-|.. ++..+++.++. .+..|..++.++-+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence 7778888888887777666 5555 3456666667776666665 77778887654 456677788888888888
Q ss_pred HHHHHHHHHHHHcC
Q 005856 603 LNAYSILFKIMEKG 616 (673)
Q Consensus 603 ~~A~~~~~~~~~~~ 616 (673)
++|.+.|.-+.+-.
T Consensus 771 ~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 771 KQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.5e-09 Score=97.51 Aligned_cols=307 Identities=14% Similarity=0.088 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhh
Q 005856 262 VKPNAVTYTALLPGL--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (673)
Q Consensus 262 ~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (673)
+.|+..+....+.++ +..++...+...+-.+......|+|......+...+...|+.++|...|++....+ +.+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 344444444444433 44566666666665555555677789999999999999999999999999887653 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (673)
.....-.+.+.|+++....+...++.... .....|-.-.......+++..|+.+-++.++..+.+...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil 339 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK---------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALIL 339 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh---------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHh
Confidence 33344456778888888888888765421 122233333344456788999999999999888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH-HHHh-cc
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM-ESLF-ED 497 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~ 497 (673)
-...+...+++++|.-.|+.++... +-+...|..|+++|...|.+.+|.-+-+...+. ++.+..++..+. ..|. ..
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc
Confidence 8888899999999999999988752 347789999999999999999988877776652 334555554442 2222 22
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHccCChHHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~ 574 (673)
.--++|.+++++.+...+. -......++..+...|..++++.++++.+. ..|| ...+++.+...+.+.+|.+.|
T Consensus 418 ~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred hhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3346777777777665433 234456677777777888888888877776 5555 345777777778888888888
Q ss_pred HHHhcCCCC
Q 005856 575 DFCLGRDCI 583 (673)
Q Consensus 575 ~~~~~~~~~ 583 (673)
..++..+|+
T Consensus 495 ~~ALr~dP~ 503 (564)
T KOG1174|consen 495 YKALRQDPK 503 (564)
T ss_pred HHHHhcCcc
Confidence 877777654
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.51 E-value=1.2e-09 Score=110.40 Aligned_cols=579 Identities=12% Similarity=-0.011 Sum_probs=306.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (673)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 113 (673)
++...|+..|-+..+.+ +.-..+|..+...|...-+..+|...|+..-+.+.. +...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 35677777777777765 556677888888888777888888888887665443 566777788888888888888887
Q ss_pred HHHHHHcC-CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005856 114 FDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI 192 (673)
Q Consensus 114 ~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 192 (673)
.-...+.. ...-...|....-.|.+.++...|+.-|+...... +.|...|..+..+|..+|++..|.++|.++....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 44333311 00112234444455667778888888888777653 33677788888888888888888888877776522
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHh
Q 005856 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN------IEPTVISYTTMIKGYVAVERADDALRIFDE-------MKS 259 (673)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~ 259 (673)
. +...---....-+..|.+.+|...+..+...- ..--..++-.+...+...|-..++..+++. ...
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 22221222233455677777777777665320 000112222222222222322223222222 211
Q ss_pred CCCCCCHHHHHHHHHHH-----------------------HcCCCH---H---HHHHHHHHHHHCCCCCCcHHhHHHHHH
Q 005856 260 FDVKPNAVTYTALLPGL-----------------------CDAGKM---V---EVQKVLREMVERYIPPKDNSVFMKLLG 310 (673)
Q Consensus 260 ~~~~~~~~~~~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (673)
+....+...|..+-.+| -..+.. + -+.+.+-.-+.. .. ++..|..++.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~-~~~~WyNLGi 783 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AI-HMYPWYNLGI 783 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hh-ccchHHHHhH
Confidence 11111222222221111 111111 1 011111111110 00 2223333333
Q ss_pred HHhc----c----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh
Q 005856 311 VQCK----S----GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382 (673)
Q Consensus 311 ~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (673)
.|.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|.+.-+...|-+.... .+....+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s---------ep~~~~~ 852 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS---------EPTCHCQ 852 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc---------cccchhh
Confidence 3322 1 12234555555555432 2334444444333 4445555555555443221 1224445
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHhHHHHHHH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGVPRDADAYICLIES 458 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~ 458 (673)
|..+.-.+.+..+++.|...|.......|.+...|..........|+.-++..+|..-- ..|-.++..-|......
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 66666666777788888888887777777777777666666666677777777776522 12334454455555555
Q ss_pred HHhcCChHHHHHHHHH----------HHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHH----
Q 005856 459 YLRKGEPADAKTALDS----------MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVA---- 523 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~---- 523 (673)
...+|+.++-+...+. ... +.+.+...|........+.+.+..|.....+.+.. ..+.+...|+
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 5566665543332222 222 33344555666666666666777776666665433 1111222232
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhc
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVL--SEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA 599 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~ 599 (673)
...+.+...|.++.|...+.... ...+.......+ .-.++++++.+.|++++...-+.. ......++......
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~---~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEW---MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccc---hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 34455566677765554332111 011111222222 347888999999998887532222 23345667777788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
|..+.|...+.++..... ++..+...|...+.--.+
T Consensus 1089 ~~k~~A~~lLfe~~~ls~-~~~~sll~L~A~~ild~d 1124 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSLSK-VQASSLLPLPAVYILDAD 1124 (1238)
T ss_pred ccchHHHHHHHHHHHhCc-cchhhHHHHHHHHHHhhh
Confidence 888889888888877643 344444444444443333
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=1.3e-08 Score=101.40 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHh
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (673)
..+...|...|++++|+.++++..+. .|+ +..|..-.+.+-+.|++.+|.+.++..... ++.|...-+..+..+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHH
Confidence 44555666667777777777766665 344 445666666666777777777777666553 4446666666666667
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGH--------YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
+.|+.++|..++....+.+..|.... ......+|.+.|++..|++.|..+.+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77777777777766655543222211 1234567788888888887777765543
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.2e-07 Score=94.45 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCcCHHHHHHHHHHHHc
Q 005856 140 GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR-----------GISLDVVTYNTMINGYNR 208 (673)
Q Consensus 140 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~ 208 (673)
-.++.+.+.+..|...++..+..+...+..-|...--.+...++|+..... ++.-|..+.--.+.+.++
T Consensus 657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK 736 (1666)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 345555555555555555555555545555555444455555666655432 233344445556666667
Q ss_pred CCChHHHHHHHHH
Q 005856 209 FKKMDEAEKLFAE 221 (673)
Q Consensus 209 ~~~~~~a~~~~~~ 221 (673)
.|++.+.+++.++
T Consensus 737 t~QikEvERicre 749 (1666)
T KOG0985|consen 737 TGQIKEVERICRE 749 (1666)
T ss_pred hccHHHHHHHHhc
Confidence 7777776666543
No 68
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.5e-07 Score=93.58 Aligned_cols=355 Identities=15% Similarity=0.154 Sum_probs=222.7
Q ss_pred HHHhccCCCCChHHHHH-------HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 12 NKIRALVPQFDHNLVYN-------VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
++++.+..+.+....-+ .+...|+.+.|++-.+.+ .+..+|..+.+.|.+.++.+-|.-.+-.|..
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 45666655555443322 344678999998777765 3566899999999999888888777776642
Q ss_pred C-C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 85 K-G-------VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 85 ~-~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
. | .+.+...-..+.......|.+++|+.+|.+-.+ |..|=..|-..|.+++|.++-+.--.
T Consensus 786 aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-- 854 (1416)
T KOG3617|consen 786 ARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-- 854 (1416)
T ss_pred hhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc--
Confidence 1 1 111112222333344677999999999999886 45555677788999999998765422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005856 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT 236 (673)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (673)
+.. ..||.....-+-..++.+.|+++|++.... -..++..|. .++...+.+.+.+. |...|.-
T Consensus 855 iHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~W 917 (1416)
T KOG3617|consen 855 IHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSW 917 (1416)
T ss_pred eeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHH
Confidence 232 345666667677788999999998875322 222222221 12333333333332 4455665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
........|+.+.|+.+|....+ |-.+++..|-.|+.++|-++-++- . |..+-..+.+.|...|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------g-d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------G-DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------c-cHHHHHHHHHHhhhhH
Confidence 66666678888888888887654 455666777788888888776652 2 6677788888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-------------C--CHHHHHHHHHHHHHchhccCCCCCCCCchh
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA-------------E--MYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (673)
++.+|...|.+... +...|+.|-.. | +.-.|-++|++. +.
T Consensus 982 ~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--------g~-------- 1036 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--------GG-------- 1036 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--------ch--------
Confidence 88888888877654 33333322211 1 222333444433 10
Q ss_pred hHHHHHHHHHccCCHhHHHHHH---------HHHHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFF---------RQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.+...+..|-+.|.+.+|+++- +.+.+.- ..|+...+.....|+...++++|..++-..++
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233444566777777666542 2222211 45778888888888888899998888765543
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-07 Score=95.48 Aligned_cols=548 Identities=14% Similarity=0.128 Sum_probs=283.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 59 HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL-----IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 59 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
+..+.+.|-++|-..+|++-+.++.+-. ...+.+.+ +..|...-.++++.+.+..|...++..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIK---R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIK---RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHH---HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455666666666666666655543210 11111111 223334446666777777777666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------C
Q 005856 134 KLILRRGRYMMAKRYFNKMLSE-----------GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS------------R 190 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~ 190 (673)
.-|...=-.+..+++|+..... ++..|+......|.+.++.|++.++.++.++-.- .
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666665577778888877542 2455666677789999999999999999876321 1
Q ss_pred ---------------CCCcCHHHH------HHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHH
Q 005856 191 ---------------GISLDVVTY------NTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-----------VISYTTMI 238 (673)
Q Consensus 191 ---------------~~~~~~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll 238 (673)
++.+|...| ...+..|.+.-+....-.+.-.+.......+ ...-.-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 111111111 0112222222111111111111111000000 00112223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH----HHHH-----HHH-H-----------CCC
Q 005856 239 KGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQ----KVLR-----EMV-E-----------RYI 297 (673)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~-----~~~-~-----------~~~ 297 (673)
.-..+.++..--+.+++.....| .-|..+++.+...|...++-.+.. ..++ +.- + +|.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 33344455555566666666666 356777777776555433211100 0000 000 0 000
Q ss_pred C-------CCcHHhHHHHHHHHhccCC-----------hHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHH
Q 005856 298 P-------PKDNSVFMKLLGVQCKSGH-----------LNAAADVLKAMIRLSI--PTEAGHYGILIENFCKAEMYDRAI 357 (673)
Q Consensus 298 ~-------~~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 357 (673)
. .+..+.|....+...+..| -.--..+.++..+.++ ..|+.-.+.-+.++...+-+.+.+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0 0011222222222222211 1223345555554433 234555666777888888888888
Q ss_pred HHHHHHHHchhccCCCCCCCCchhhHHHHHHH---------------------------HHccCCHhHHHHHHHHHHHcC
Q 005856 358 KLLDKLVEKEIILRPQSTLDMEASSYNPMIQH---------------------------LCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------------~~~~~~~~~a~~~~~~~~~~~ 410 (673)
+++++++-....+. -+...-+.++-. +...+-+++|..+|++...
T Consensus 1005 ELLEKIvL~~S~Fs------e~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~-- 1076 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFS------ENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM-- 1076 (1666)
T ss_pred HHHHHHhcCCcccc------cchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc--
Confidence 88888754332211 111112222222 2222333344444433211
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
+..+.+.|+. ..+.+++|.++-++. ..+..|..+..+-.+.|...+|.+-|-+. .|+..|.-+
T Consensus 1077 --n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1077 --NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred --cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 1122222221 123344444433332 24567888888888888888877666543 456678888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
+..+.+.|.|++-.+++..+.+..-.|.+. ..++.+|.+.++..+-.++ +..+...+...+++.|...|.++.|
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f----i~gpN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF----IAGPNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH----hcCCCchhHHHHhHHHhhhhhhHHH
Confidence 888888888888888888887776655554 3577788888877665444 3333333455678888888888888
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc----------------------C--CCCCHHHHHH
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK----------------------G--GVTDWKSSDK 626 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----------------------~--~~~~~~~~~~ 626 (673)
.-++. +...|..|+-.+...|+|..|...-+++-+. | .......+..
T Consensus 1214 kl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLee 1284 (1666)
T KOG0985|consen 1214 KLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEE 1284 (1666)
T ss_pred HHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHH
Confidence 77776 2334556777777777777765443332110 1 0123344455
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhh
Q 005856 627 LIAGLNQEGNTKQADILSRMIRGE 650 (673)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~~~~~ 650 (673)
++.-|...|-+++-..+.+.-...
T Consensus 1285 li~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1285 LIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHhhhch
Confidence 777777888877776555544433
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.3e-10 Score=107.42 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=131.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4556666666777777777777777766532 223455566666677777777777777777766443 44556667777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
+...|++++|.+.++++.+....|. +..++..+...|++++|...++++++..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766432222 233556666778888888888887776543 34556678888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 605 AYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
|.+.+++++.. .+.+...+..+...+...|+.++|....+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888887776 233445555566777788888888776665543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=7.1e-09 Score=102.44 Aligned_cols=435 Identities=13% Similarity=0.058 Sum_probs=232.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 005856 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYN 165 (673)
Q Consensus 87 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 165 (673)
++.++.+|..+.-+...+|+++.+-+.|++....- -.....|..+...|...|.-..|..+++.-......| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34567777777777777777777777777765422 2334567777777777777777777777665443223 233333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CcCHHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHCCCCC
Q 005856 166 VMLWGFF-LSLKLETAIRFFEDMKSR--GI--SLDVVTYNTMINGYNRF-----------KKMDEAEKLFAEMKEKNIEP 229 (673)
Q Consensus 166 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 229 (673)
..-+.|. +.+..++++++-.++... +. ......|-.+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3333333 346666666666655541 11 11223333333333221 1134566777777665432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHH
Q 005856 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (673)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (673)
|......+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... .++|......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 333333344455667777788877777777644566777777777777777788887777776664 222333333333
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH---HHH
Q 005856 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY---NPM 386 (673)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 386 (673)
..-...++.+++......+... |...- ...+.++-...++....+.-. .. ...-...++ ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la-----~~-q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA-----LS-QPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC-----cc-cccccchhhHHHHHH
Confidence 3334456666666655554331 00000 000000011111111111000 00 000000111 111
Q ss_pred HHHHHccCCHhHHHHHHHHHHHcCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 387 IQHLCHNGQTGKAEIFFRQLMKKGVLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+..-.+.-..+.. +........++ ...|......+.+.+..++|...+.++... .+.....|......+.
T Consensus 620 ~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 1111111111111 11111111011 234555666677777777777666666654 2335556666666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 461 RKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASR--VMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
..|+..+|.+.|...... .|+ +....++...+.+.|+..-|.. ++..+.+.++. +...|..+...+...|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence 777888888877777653 344 4456677777777777666666 77777777765 77778788888888888888
Q ss_pred HHHHHHHHHh
Q 005856 538 ALGRIDLMMQ 547 (673)
Q Consensus 538 A~~~~~~~~~ 547 (673)
|.+.|....+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 8887776665
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.1e-08 Score=91.72 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=166.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCch-hhHHHHHHHHHccCCHhHHHHHHHHHHHcCC
Q 005856 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (673)
Q Consensus 333 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (673)
++.+......+...+...|+.++|+..|++.... .|.. .......-.+.+.|+.+....+...+.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 4666677777777788888888888888776322 1221 1122222334566777777777777666543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
.....|-.-+......+++..|+.+-++..+.+. .+...+..-...+...|++++|.-.|+..+... +.+...|..++
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~ 375 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLF 375 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 3444444444555556777777777777766432 244455444556677788888877777776531 23456777888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHc-CCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccC
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL-EALLM-RGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKG 565 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g 565 (673)
.+|...|.+.+|...-+..... +.-+..+...+. ..+.. -.--++|.+++++.+. ..|++. .+...+...|
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhC
Confidence 8888888888877776666554 122444444332 22221 2234677777777666 666643 3455556678
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++++.++++.+.. .+|....+.|++.+...+.+.+|...|..++...
T Consensus 453 ~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 888888888877764 3455666778888888888888888877777654
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=4.4e-11 Score=105.20 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=187.3
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+..+|.+.|-+.+|+..++...+. .+.+.||..|.++|.+...+..|+.++.+-.+. .+-++.......+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 56788999999999999999987776 467788999999999999999999999988875 3334445556777888889
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
+.++|.++++...+.. +.+......+...|.-.++.+-|+.++.++++.|+. ++..|..+.-+|.-.+++|-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988742 445666666777788899999999999999999988 78889999999999999999999999
Q ss_pred HHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 544 LMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 544 ~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+.+..--.|+ |..+..+....|++.-|.+.|+-++..++. ..+.++.|+-.-.+.|+.++|..++..+.+..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887555555 334555555789999999999988887644 56778888888889999999999998877654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2.5e-10 Score=118.06 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=134.7
Q ss_pred ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC
Q 005856 71 KLNHARCILLDMPKKGVQWDEDMFEVLIESYG---------KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (673)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (673)
++++|...|++..+.++. +...+..+..+|. ..+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 466666666666665432 3444444444332 1234667777777776654 3455566666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 005856 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (673)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 221 (673)
+++|...|++..+.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777766653 224455666666666777777777777777665332 222222333344556677777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 005856 222 MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (673)
Q Consensus 222 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 300 (673)
......+-+...+..+..++...|+.++|...+.++... .|+.. ..+.+...|...| +.+...++.+.+..-..+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 654421223344555666666777777777777665443 33322 3333444445555 355555555444211110
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (673)
....+ ....+.-.|+-+.+... +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11111 33334445555555544 555543
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=102.85 Aligned_cols=237 Identities=10% Similarity=0.096 Sum_probs=157.2
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (673)
...-..+..+|.+.|....|...|+..++. .|-+.||..|-..|.+..++..|+.++.+-++.. +-++.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------P~~VT 291 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------PFDVT 291 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---------Cchhh
Confidence 334455666677777777777777666665 4555566667777777777777777777665432 12333
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
...-+.+.+-..++.++|.++++...+..+.+.....++...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 33445556666677777777777777777777777777777777777777777777777777665 66777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
.++++-++..|++....--.|+ ...|..+.......||+.-|.+.|+-.+..+.. +.+.++.+.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHH
Confidence 7777777777777765433343 335666666666777777777777777666544 5566676766666777777777
Q ss_pred HHHHHHHhCCCCCC
Q 005856 540 GRIDLMMQSGSVPN 553 (673)
Q Consensus 540 ~~~~~~~~~~~~p~ 553 (673)
.+++.... ..|+
T Consensus 450 sll~~A~s--~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHhhh--hCcc
Confidence 77776665 4444
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=9e-09 Score=102.56 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=109.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
++..+...|...|++++|+++.+..+++.|..+..|..-.+.+-+.|++.+|.+.++..+..+.. |...-+..+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44666778889999999999999999999888999999999999999999999999999987544 77888888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchh------hH--HHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 462 KGEPADAKTALDSMIEDGHSPASS------LF--RSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
+|+.++|.+++..+.+.+..|-.. .| .....+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998766433322 12 33456788999999999888877653
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.2e-08 Score=93.49 Aligned_cols=259 Identities=16% Similarity=0.176 Sum_probs=145.8
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHh----HHHHHHHHHhcCChh-HHHHHHHHHHhCCC----------CCCHH
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA----FNNLIRGHSKEGNPD-SAFEIVKIMGRRGV----------PRDAD 450 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~----------~~~~~ 450 (673)
+.-.+...|+..+|..++..+.+..++|... -|.|+.+-....-++ .++..++....... .....
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445667899999999999999988665533 333333222222122 12222222111000 00111
Q ss_pred hH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005856 451 AY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF--EDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (673)
Q Consensus 451 ~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (673)
.. +.++..|. +.-+.+.++....- +..|. ..+..++..+. +...+..+.+++....+..+.-.....-..+.
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 11 12222222 33334444333321 12233 33444444332 22357788888888777655434555556677
Q ss_pred HHHcCCCHHHHHHHHH--------HHHhCCCCCCHHH-HHHHHHccCChHHHHHHHHHHhcC--CCCCC----hHhHHHH
Q 005856 528 ALLMRGHVEEALGRID--------LMMQSGSVPNFDS-LLSVLSEKGKTIAAVKLLDFCLGR--DCIID----LASYEKV 592 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~-~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l 592 (673)
.....|+++.|++++. .+.+.+..|.... +...+.+.++.+-|..++..++.. .-.+. ...+..+
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7889999999999999 7777778888654 444555666766677777666642 11111 2223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+..-.+.|+-++|...++++++.. +++...+..++.+|... +.+.|+.+.+.|....
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 444456799999999999999854 34666666677777654 5667766666655433
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=8.8e-10 Score=92.71 Aligned_cols=200 Identities=18% Similarity=0.129 Sum_probs=159.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
.+...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|+++++..+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 355667778899999999999999988753 234567777888888999999999999999888666 677788888889
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
|..|++++|...|++....+..|. +..++..-.+.|+.+.|..+|+++++.++..+.. ...+++..++.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~-~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA-LLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH-HHHHHHHHHhcccchHH
Confidence 999999999999998888655444 4556666678999999999999999988765444 44789999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
..++++....++ .+..++-..|+.-...|+.+.|......|.+.-+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999888776 67767666777788889988887777777655543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=3.9e-10 Score=110.55 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=170.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-----G-VPRDAD-AYICLIESYLRKGEPADAKTALDSMIED-----G- 479 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~- 479 (673)
-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++.+|..+|+++..- |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3346666888899999999999988877653 2 123332 3344777888999999999999988643 2
Q ss_pred CCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHh---C
Q 005856 480 HSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-ENL-DLVAKILEALLMRGHVEEALGRIDLMMQ---S 548 (673)
Q Consensus 480 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 548 (673)
..|. ..+++.|..+|.+.|++++|..+++.+.+. +.. |.+ ..++.++..+...+++++|..+++...+ .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122 345677777899999999998888877653 222 222 3356677788889999999999886665 1
Q ss_pred CCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCC----CCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 549 GSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRD----CII---DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 549 ~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
-..++ ...++..|...|++++|.+++++++... ... ....++.++..|.+.+++.+|.+.|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 3458888889999999999999988642 111 145668899999999999999988887543
Q ss_pred ------cCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 615 ------KGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 615 ------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
...+....+|..|+..|...|+++.|..+.+.+...-
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 1222346677789999999999999988877766443
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=6.8e-10 Score=114.90 Aligned_cols=216 Identities=15% Similarity=0.040 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (673)
+++++|...++++++.. | -+...+..+...+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 318 ~~~~~A~~~~~~Al~ld----P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 318 NAMIKAKEHAIKATELD----H-----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred hHHHHHHHHHHHHHhcC----C-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 34566666666665432 1 13445555555666667777777777777776666677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
++|...++.+.+.+.. +...+..++..+...|++++|...+++..+...+-+...+..+...+...|++++|...+.++
T Consensus 389 ~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 389 EEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 7777777777665322 222223333345556777777777777665321112333455556666777777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
....+. +....+.+...|...| ++|...++.+.+. ...|. .......+.-.|+.+.+..+ +++.+.
T Consensus 468 ~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 468 STQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 544222 3334445555555555 3566655555441 11111 11133334445666666555 555554
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.2e-07 Score=88.21 Aligned_cols=454 Identities=14% Similarity=0.107 Sum_probs=227.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.....+++++|.+....++... |.+..++..-+.++++.+.|++|+.+.+.-..... .+...|.. .-+.-+.+..+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEK-AYc~Yrlnk~D 96 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEK-AYCEYRLNKLD 96 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHH-HHHHHHcccHH
Confidence 3445668888888888888765 67777888888888888888888866554332110 01111111 12334678888
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRH--TYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+|+..++-..+ .+..+...-.+.+.+.|++++|+.+|+.+.+.+.+ +.. .-..++.+-. .-.+. +.+.
T Consensus 97 ealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a----~l~~~-~~q~ 166 (652)
T KOG2376|consen 97 EALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA----ALQVQ-LLQS 166 (652)
T ss_pred HHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----hhhHH-HHHh
Confidence 88888773321 33345566667777888888888888888766432 211 1111111110 01111 1222
Q ss_pred HHhCCCCcCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHCC---C---CCC---H-----HHHHHHHHHHHhcCCHHH
Q 005856 187 MKSRGISLDVVTYNT---MINGYNRFKKMDEAEKLFAEMKEKN---I---EPT---V-----ISYTTMIKGYVAVERADD 249 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~---~---~~~---~-----~~~~~ll~~~~~~~~~~~ 249 (673)
... .| ..+|.. ..-.+...|++.+|+++++.....+ + ..+ . ..-..|..++-..|+.++
T Consensus 167 v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 167 VPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred ccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 211 22 222222 2234556788888888887763211 0 000 0 011223344555666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCHHH--HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHH
Q 005856 250 ALRIFDEMKSFDVKPNAVTYTALLPGL---CDAGKMVE--VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324 (673)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 324 (673)
|..++....... .+|........+-+ ....++-. +...++..... ..+....-
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---------------------l~~~~l~~ 300 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---------------------LAEFLLSK 300 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---------------------hHHHHHHH
Confidence 666666666553 33432222221111 11111000 01111110000 00001111
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH--ccCCHhHHHHH
Q 005856 325 LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC--HNGQTGKAEIF 402 (673)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~ 402 (673)
|..-.. .....-+.++..| .+..+.+.++.... + +..|.. .+..++..+. +...+..+.++
T Consensus 301 Ls~~qk----~~i~~N~~lL~l~--tnk~~q~r~~~a~l--------p--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 301 LSKKQK----QAIYRNNALLALF--TNKMDQVRELSASL--------P--GMSPES-LFPILLQEATKVREKKHKKAIEL 363 (652)
T ss_pred HHHHHH----HHHHHHHHHHHHH--hhhHHHHHHHHHhC--------C--ccCchH-HHHHHHHHHHHHHHHHHhhhHHH
Confidence 110000 0001111222222 23333444433333 1 112222 2333333322 22246677777
Q ss_pred HHHHHHcCCCC-HHhHHHHHHHHHhcCChhHHHHHHH--------HHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 403 FRQLMKKGVLD-PVAFNNLIRGHSKEGNPDSAFEIVK--------IMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
+....+..+.. ..+...++......|+++.|.+++. .+.+.+..| .+-..+...+.+.++.+.|..++.
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHH
Confidence 77766665433 5566677777888888888888888 444444333 344556666677777666666666
Q ss_pred HHHHc--CCCCchhhHHHHH----HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 474 SMIED--GHSPASSLFRSVM----ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 474 ~~~~~--~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
..+.. .-.+.......++ ..-.+.|+.++|..+++++.+.++. +..+...++.+|++. +++.|..+-+
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 65532 1112222222222 2334568889999999998887544 677777777777665 4666766544
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.1e-09 Score=101.14 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 267 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
..+..+...+...|++++|...++++++. .|.+...+..+...+...|+++.|...+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34444455555555555555555555543 23345555555555555666666666665555543 2333445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+...|++++|...++++++.. ........+..+..++...|+++.|...+.+.....+.++..+..+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 666666666666666654321 0011222344455555566666666666666665555555556666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344455555555556666666666555544
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.33 E-value=2.2e-07 Score=94.61 Aligned_cols=598 Identities=13% Similarity=0.015 Sum_probs=323.9
Q ss_pred HHHHHHhccCCCCChHHH----HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 9 RLQNKIRALVPQFDHNLV----YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
.++..|+.+.-.++.-.. ..+++..-+...|.+-|+.+-+.+ +.+..++......|++..+++.|..+.-...+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 344455555444443333 335555567889999999998877 78888999999999999999999998544333
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005856 85 KGVQ-WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHT 163 (673)
Q Consensus 85 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 163 (673)
.... .-..-|..+.-.|...++...|...|+...+.. |.|...|..++.+|.+.|++..|.++|.+.... .|+. +
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~ 630 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-K 630 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-H
Confidence 2110 011223334556788899999999999998866 567889999999999999999999999888664 3432 2
Q ss_pred HHHHH--HHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHCC--
Q 005856 164 YNVML--WGFFLSLKLETAIRFFEDMKSRG------ISLDVVTYNTMINGYNRFKKM-------DEAEKLFAEMKEKN-- 226 (673)
Q Consensus 164 ~~~l~--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~-- 226 (673)
|...- -..+..|.+.++...+......- ..--..++..+...+.-.|-. +++.+.|.-.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 32222 23456788888888777665320 000111221111111111211 12222221111111
Q ss_pred ------------------CCCC------------------------------------------HHHHHHHHHHHHh---
Q 005856 227 ------------------IEPT------------------------------------------VISYTTMIKGYVA--- 243 (673)
Q Consensus 227 ------------------~~~~------------------------------------------~~~~~~ll~~~~~--- 243 (673)
+.|+ ..+|..+...|.+
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 0111 1111111111111
Q ss_pred -c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh
Q 005856 244 -V----ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (673)
Q Consensus 244 -~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (673)
. .+...|+..+....+.. ..+..+|+.+.- ....|++.-+...|-+-.. ..|.+..+|..+...+.+..++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccH
Confidence 0 11123344443333221 122333333322 2333444444444433332 3455666677777777778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
+.|...|...+... |.+...|-.........|+.-++..+|..-.+-. ...+-.++...|.........+|+.+.
T Consensus 867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~----~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELC----SKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh----ccccccchhhHHHHHHHHHHhccchHH
Confidence 99999988887764 4455555544444556677777777776632222 333444555555554444555655544
Q ss_pred HH----------HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHH----HHHHHHhcC
Q 005856 399 AE----------IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYIC----LIESYLRKG 463 (673)
Q Consensus 399 a~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~~ 463 (673)
-+ -.+++.....+.+...|...+...-+.+.+..|.+...+.... ....+...|+. +.+.++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 33 3344444455677778888888888888888887777665321 11234445553 334455667
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-LDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
+++.|...+..... ..+......-+. ..-.|+++++.+.|+++... +-..+ +.....++.+....+.-+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 77765544332211 112112111122 24468999999999999876 22222 34556677777788888888876
Q ss_pred HHHHHhCCCCCCHHHHH-----HHHH-ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 542 IDLMMQSGSVPNFDSLL-----SVLS-EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 542 ~~~~~~~~~~p~~~~~~-----~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+-+.... -.|+..++. ..+. +.-....+++-+++......-.-+..+ ..-..|.+.|+-....+++++.+-.
T Consensus 1098 Lfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l-l~e~i~~~~~r~~~vk~~~qr~~h~ 1175 (1238)
T KOG1127|consen 1098 LFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL-LKELIYALQGRSVAVKKQIQRAVHS 1175 (1238)
T ss_pred HHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH-HHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 6555541 123322211 1111 121222222222222222111111122 2334456788888888889988865
Q ss_pred CCCCCHHHHHHHH
Q 005856 616 GGVTDWKSSDKLI 628 (673)
Q Consensus 616 ~~~~~~~~~~~l~ 628 (673)
. +.++..|..|-
T Consensus 1176 ~-P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1176 N-PGDPALWSLLS 1187 (1238)
T ss_pred C-CCChHHHHHHH
Confidence 3 23444444444
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.33 E-value=3.7e-08 Score=87.83 Aligned_cols=310 Identities=13% Similarity=0.109 Sum_probs=179.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+..+++. .|+-..+...-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555566666666666655431 111122222334556666666666666666653 4433333444455566667
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCH
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (673)
.++.|..-|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~------------------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW------------------------VLVQQLKSASGSGDC 171 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH------------------------HHHHHHHHHhcCCch
Confidence 7777776666666653 21111 011111110001100 112233344556777
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
..|+.....+++..+.+...+..-..+|...|++..|+.-++...+..- .+..++..+-..+...|+.+.++...++.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776666655432 244555556666667777777777777766
Q ss_pred HcCCCCchhh----HHH---H------HHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHH
Q 005856 477 EDGHSPASSL----FRS---V------MESLFEDGRVQTASRVMKSMVEKGVKEN---LDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 477 ~~~~~~~~~~----~~~---l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
+. .||... |.. + +......++|.++.+-.+..++..+... ...+..+-.++...|++-+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 53 354321 111 1 1223456778888888888877655422 2334456667778888999999
Q ss_pred HHHHHHhCCCCCCH-HH---HHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 541 RIDLMMQSGSVPNF-DS---LLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 541 ~~~~~~~~~~~p~~-~~---~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
...++++ +.|+. .. -..+|.-...+++|+.-|+++.+.+.+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 8888888 77773 33 344555677888999988888887644
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=1.6e-07 Score=92.22 Aligned_cols=217 Identities=15% Similarity=0.129 Sum_probs=118.1
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.|...|+++.|...|-.+. .....+.+......|.+|+.+++.+.++.. -..-|..+...|+..|+++
T Consensus 715 hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 4445556666655554331 222344555566677777777776665432 2334556666777777777
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
.|.++|.+.-. ++..|..|.+.|+|..|.++-.+.. |.......|..-..-+-..|++.+|.+++-.+.
T Consensus 783 ~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 77777765432 4556677777777777777766652 233334444444444556666666666653332
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT 268 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (673)
. |+ ..+.+|-+.|..+..+++.++-... .-..|...+..-+...|+...|..-|-+..+
T Consensus 852 ~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------- 910 (1636)
T KOG3616|consen 852 E----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------- 910 (1636)
T ss_pred C----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------
Confidence 1 22 2345666666666666665543321 1123344455555666666666655543322
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 005856 269 YTALLPGLCDAGKMVEVQKVL 289 (673)
Q Consensus 269 ~~~ll~~~~~~~~~~~a~~~~ 289 (673)
|...+..|-..+.++.|.++-
T Consensus 911 ~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHhhhhhhHHHHHHHH
Confidence 333344444455555554443
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=6.8e-09 Score=87.49 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=158.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (673)
+...+.-.|...|+...|..-+++.++. +|++..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455666788888888888888888885 67788888888888888888888888888888764 55667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (673)
|..|++++|...|++++.. |. ......+|..+.-+..+.|+.+.|...|++..+..+..+.+...+.......
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 8889999999999888754 22 2223447788888888889999999999999888888888888888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 428 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
|++-.|..+++.....+. ++.......|..-...|+.+.+.+.=..+..
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999988888877654 7888887888888888888877776666654
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=8.1e-09 Score=97.56 Aligned_cols=204 Identities=15% Similarity=0.018 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHH
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESL 494 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 494 (673)
.|..+...|...|++++|...|+...+.. +.+...|+.+...+...|++++|...+++.++.. |+ ...+..+...+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34444455555555555555555555432 1234555555555555555555555555555421 22 33444444445
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH--HH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA--VK 572 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A--~~ 572 (673)
...|++++|.+.|++..+.++.. .. .......+...+++++|++.+++.......+.+. ........|+..++ .+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~~~~~ 219 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPND-PY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEETLME 219 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHHHHHH
Confidence 55555555555555555543321 10 1111111223445555555554433211111121 12222223333222 11
Q ss_pred HHHHHhcCCCC---CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005856 573 LLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK 626 (673)
Q Consensus 573 ~~~~~~~~~~~---~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 626 (673)
.+.+.++..+. .....|..++..+.+.|++++|+..|++++..+ +++.+.+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 11111111111 123456667777777777777777777777654 334444444
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.4e-08 Score=96.01 Aligned_cols=126 Identities=17% Similarity=-0.018 Sum_probs=66.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
|......+...|+.+.|...|++..+..|.++..|+.+...+...|++++|...|+...+... -+..+|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 444444555556666666666666665555566666666666666666666666666655321 1344555555555566
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
|++++|.+.++...+.. |+..........+...++.++|...|.+..
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66666666666655432 332211111112233455666666665443
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=4.5e-08 Score=85.56 Aligned_cols=355 Identities=12% Similarity=0.108 Sum_probs=216.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV-ML 168 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~ 168 (673)
...-+.+++..+.+..++.+|.+++..-.++. +.+....+.|...|....++..|-+.|+++-.. .|...-|.. -.
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33446666777778888888888888877754 336667777778888888888888888888664 344444432 24
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005856 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMING--YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (673)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 246 (673)
..+.+.+.+..|+.+...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 5566778888888888877653 232222222222 234678888888888776433 44455555555668888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhH----HHHHHHHhccCC-hHHH
Q 005856 247 ADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF----MKLLGVQCKSGH-LNAA 321 (673)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~-~~~a 321 (673)
++.|.+-|+...+.+---....|+..+. ..+.|+++.|.+...+++++|+.. .+..- ...+.+- ..|+ ...+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~-HPElgIGm~tegiDvr-svgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQ-HPELGIGMTTEGIDVR-SVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc-CCccCccceeccCchh-cccchHHHH
Confidence 9999888888876543334456666554 456688888888888888877643 11110 0000000 0000 0000
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (673)
..- -...++.-...+.+.++++.|.+.+-+|- |......|+.|...+.-.- ..+++....+
T Consensus 237 ~Sa-----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmP-------PRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 237 QSA-----------LVEAFNLKAAIEYQLRNYEAAQEALTDMP-------PRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred HHH-----------HHHHhhhhhhhhhhcccHHHHHHHhhcCC-------CcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 000 01123444445678899999998888872 4445566777776554332 2455666666
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
-+.-+....|..+.||..++-.||+..-++.|-.++.+-..... -.+...|+.+=....-.-.+++|.+-++.+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66667777788889999999999999988888888755433211 123333433222222334455555554443
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=6.9e-09 Score=101.98 Aligned_cols=245 Identities=14% Similarity=0.126 Sum_probs=149.6
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-----S-IPTEAG-HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
-..+...+...|...|+++.|..+++..++. | ..|... ....+...|...+++.+|..+|++++...... ..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-FG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-cC
Confidence 3445555666666677777776666665543 1 122222 23346778888999999999999987754321 11
Q ss_pred CCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-----CCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 005856 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-----VLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-- 443 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 443 (673)
...+.-..+++.|..+|.+.|++++|...++...+.. ... ...++.+...++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1122233467777788888999888888877765532 111 224566677777788888888877765431
Q ss_pred -CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C--CC-chhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 444 -GVPR----DADAYICLIESYLRKGEPADAKTALDSMIEDG----H--SP-ASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 444 -~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
-+.+ -..+++.|...|...|++.+|.++++..+... . .+ ....++.+...|.+.+.+.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 13467777777777777777777777765321 1 11 13345566666777777777766666543
Q ss_pred Hc----CCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 512 EK----GVK--ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 512 ~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.- |+. ....+|..|+..|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 221 123456667777777777777777766555
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-07 Score=90.16 Aligned_cols=397 Identities=14% Similarity=0.101 Sum_probs=232.5
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCH
Q 005856 204 NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA-VTYTALLPGLCDAGKM 282 (673)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~ 282 (673)
.+.+..|+++.|...|-+..... ++|.+.|..-..+|...|++++|++=-.+-.+. .|+. ..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999988875 448899999999999999999998866666654 5664 4799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHH---HHHHHHHhC---CCCCChhhHHHHHHHHHhc------
Q 005856 283 VEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA---DVLKAMIRL---SIPTEAGHYGILIENFCKA------ 350 (673)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 350 (673)
++|+..|.+-++. .|++......+..++.......... .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999885 7778999999988872210000000 011111000 0000111222222222111
Q ss_pred -CCHHHHHHHHHHHHHch--------hccC-----C---CCCCCCc-------------hhhHHHHHHHHHccCCHhHHH
Q 005856 351 -EMYDRAIKLLDKLVEKE--------IILR-----P---QSTLDME-------------ASSYNPMIQHLCHNGQTGKAE 400 (673)
Q Consensus 351 -~~~~~a~~~~~~~~~~~--------~~~~-----~---~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~ 400 (673)
.+.+......-.+...+ .... | .....|. ..-...+.++..+..++..|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111111111100 0000 0 0000010 011344566666777888888
Q ss_pred HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH-------HHHHHHhcCChHHHHHHHH
Q 005856 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC-------LIESYLRKGEPADAKTALD 473 (673)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~ 473 (673)
+.+....... .+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+.++++.+...+.
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8888888877 66666788888888888888877777666655432 2222333 3335556677888888888
Q ss_pred HHHHcCCCCchhhHHHH-------------------------HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 474 SMIEDGHSPASSLFRSV-------------------------MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l-------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
+....-..|+...-... ...+.+.|++..|+..|.+++..++. |...|.....+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 87654444433221110 12245567777777777777776644 66667777777
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
|.+.|.+..|+.-.+...+ ..|++.. =+.++....+++.|.+.|+++++.++. +....+.+.+++........
T Consensus 402 ~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~-~~e~~~~~~rc~~a~~~~~~ 478 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS-NAEAIDGYRRCVEAQRGDET 478 (539)
T ss_pred HHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHhhcCCC
Confidence 7777777777776666666 5566322 233344556777777777777776533 22223334444433233333
Q ss_pred HHHHHHH
Q 005856 605 AYSILFK 611 (673)
Q Consensus 605 A~~~~~~ 611 (673)
..++.++
T Consensus 479 ~ee~~~r 485 (539)
T KOG0548|consen 479 PEETKRR 485 (539)
T ss_pred HHHHHHh
Confidence 3444444
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.3e-06 Score=84.47 Aligned_cols=456 Identities=15% Similarity=0.131 Sum_probs=213.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHhhccc--------------------CCC
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDR-ETHLKMIEILGRVGKLNHARCILLDMPK--------------------KGV 87 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------~~~ 87 (673)
.....|+++.|..+++.... .|+. ..|..+.......|+.--|.+.|..+-+ .|-
T Consensus 453 aaid~~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGG 528 (1636)
T ss_pred cccccCchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 34466899999988887642 3444 4566666666666665555555543211 011
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 88 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
. ....|..-.....-..++.+|..+|-+-- .-...|..|....+|++|+.+-+.. |.+.-...-.+.
T Consensus 529 d-gt~fykvra~lail~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy 595 (1636)
T KOG3616|consen 529 D-GTDFYKVRAMLAILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSY 595 (1636)
T ss_pred C-CchHHHHHHHHHHHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHH
Confidence 1 11122211111112234444444443211 1122344455555555555543322 211111222334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
++++...|+-++|-++- .. +-.+ -+.++.|.+.|.+..|.+....-.. +..|......+..++.+..-+
T Consensus 596 ~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~ely 664 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELY 664 (1636)
T ss_pred HHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHH
Confidence 44445555555443321 11 1111 2345666777766665544321111 112444555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHH-hHHHHHHHHhccCChHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGHLNAAADVLK 326 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 326 (673)
++|-.+|+++.. +...+.+|-+-.-+.+|+++-+-. .|.... .-......+...|+++.|..-|-
T Consensus 665 dkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 665 DKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred HhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHH
Confidence 666666655542 111222222222234444433322 111111 11222333444555565555554
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHH
Q 005856 327 AMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (673)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (673)
+... .-..+.+-.....|.+|+.+++.+.++. .....|-.+.+.|+..|+++.|+++|-+.
T Consensus 731 ea~~---------~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 731 EANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred Hhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3321 2233445555666777777777663322 12224555666677777777777776543
Q ss_pred HHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh
Q 005856 407 MKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
..++-.+.+|.+.|+|+.|.++-.+... .......|..-..-+-..|++.+|.+++-... .|+
T Consensus 792 --------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~--- 854 (1636)
T KOG3616|consen 792 --------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD--- 854 (1636)
T ss_pred --------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch---
Confidence 2355566777777777777766555432 23344455555555556666666666554431 233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGK 566 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~ 566 (673)
..+..|-+.|..+..+++..+-..... ..+-..+..-|-..|+..+|.+.|-+.. ++......|...+-
T Consensus 855 --~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 855 --KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASEL 923 (1636)
T ss_pred --HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhh
Confidence 223455666666666655554322211 2233345555555666666655443222 23334444444444
Q ss_pred hHHHHHH
Q 005856 567 TIAAVKL 573 (673)
Q Consensus 567 ~~~A~~~ 573 (673)
+++|..+
T Consensus 924 w~dayri 930 (1636)
T KOG3616|consen 924 WEDAYRI 930 (1636)
T ss_pred HHHHHHH
Confidence 5554443
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=1e-10 Score=76.34 Aligned_cols=49 Identities=43% Similarity=0.911 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (673)
Q Consensus 229 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (673)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3e-08 Score=94.14 Aligned_cols=241 Identities=14% Similarity=0.114 Sum_probs=153.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHH
Q 005856 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (673)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (673)
...+++...+..+++.|+.-+....... .++.-++....+|...|.+........+.++.+...+..... -...+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl--Iak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL--IAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH--HHHHHH
Confidence 3445555556666666666666666543 344445555566666666666666666655544221111000 011122
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcC
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLRKG 463 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 463 (673)
.+..+|.+.++++.+...|.+...... ++.+ ..+....+++........-.+ |.. .-...-...+.+.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~-------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHR-TPDL-------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhc-CHHH-------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhcc
Confidence 234466677889999999988665541 1222 222334445554444443322 222 12222356678899
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
++..|+..+.++++.. +.|...|.....+|.+.|.+..|++-.+..++.++. ....|..=+.++....+|++|++.|+
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 556778888888999999999999999999888554 45666666777777889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHc
Q 005856 544 LMMQSGSVPNFDSLLSVLSE 563 (673)
Q Consensus 544 ~~~~~~~~p~~~~~~~~~~~ 563 (673)
+.++ ..|+...+++.+.+
T Consensus 451 eale--~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRR 468 (539)
T ss_pred HHHh--cCchhHHHHHHHHH
Confidence 9988 66887666666554
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.4e-10 Score=75.66 Aligned_cols=49 Identities=49% Similarity=0.815 Sum_probs=31.5
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 242 (673)
||..+||.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.3e-05 Score=80.43 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=104.0
Q ss_pred HHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH
Q 005856 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (673)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (673)
......|..++|..+|.+..+. ..+=..|...|.+++|.++-+.-.+.. =..+|..-...+-..++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHH
Confidence 3445778899999999887653 344456778899999988876544321 1234555555566667788
Q ss_pred HHHHHHHHHH----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 144 MAKRYFNKML----------SEGI---------EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 144 ~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
.|++.|++.. ...+ ..|...|.-....+-..|+.+.|+.++..+.. |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 8888776531 1110 11222333333333345666666666554432 345566
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
..|-.|+.++|-++-++-. |......+.+.|...|++.+|...|.+.+
T Consensus 947 I~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666778887777765532 55666778888888888888888887664
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=4.1e-07 Score=79.68 Aligned_cols=420 Identities=15% Similarity=0.144 Sum_probs=220.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT-MIKGYV 242 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 242 (673)
+.+.+..+.+..+++.|++++..-.++... +....+.|..+|....++..|-..++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 444555555666677777776666555322 5556666666777777777777777776653 333333332 133445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLP--GLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (673)
+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++.... .+..+.........+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHH
Confidence 666777777777666542 22222111122 234567777777777665432 245555566666677888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHH
Q 005856 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE 400 (673)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 400 (673)
|.+-|....+-+--.....|+.. -+..+.+++..|++...+++++++...|+-++...... ++.- ..|+ ..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg----iDvr-svgN---t~ 233 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG----IDVR-SVGN---TL 233 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc----Cchh-cccc---hH
Confidence 88888877765422333345433 35557788888888888888877654444333211110 0000 0000 00
Q ss_pred HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
.+.... -...+|.-...+.+.++++.|.+.+..|.-+ ....|+.|...+.-.- -.+++.+..+-+.-+...+
T Consensus 234 ~lh~Sa------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 234 VLHQSA------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHHH------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 111110 1134555555667778888888777777532 2334556654443222 2344555555555555433
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCH-HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLM-RGHVEEALGRIDLMMQSGSVPNF-DS 556 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~-~~ 556 (673)
. -...||..++-.||+..-++.|..++.+-...-.+ .+...| .++.++.. .-.+++|.+-++.+...-. ... ..
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~-~kLRkl 383 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLT-EKLRKL 383 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 2 34567777777888887777777766553222111 122222 34455443 3366666655544432100 000 00
Q ss_pred HHHHHH-c-cCC---hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLS-E-KGK---TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~-~-~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+.+-. + ..+ ...|++-++.+++. --......++.++...++..+.++|+.-++-.
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 011100 1 111 11222223333332 12334466788889999999999999877644
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=3e-07 Score=82.15 Aligned_cols=294 Identities=11% Similarity=0.025 Sum_probs=178.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHH-HHHHHHHHHHhcC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKG 105 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~ 105 (673)
-..+...|++..|+..|-.+.+-+ |.+-.++..-..+|...|....|+.=+..+++. .||.. ....-...+.++|
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 446778889999999999998766 667777777888899999999888888888775 34432 2223345678999
Q ss_pred CHHHHHHHHHHHHHcCCccC--HhhHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERS--VKSYD------------ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~--~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (673)
.++.|..-|+...+...... ...+. ..+..+...|+...|+.....+++. .+-|...|..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 99999999999988642111 11111 1122344568888888888888775 345677777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH----H---------H
Q 005856 172 FLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTT----M---------I 238 (673)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l---------l 238 (673)
...|++..|+.=+....+..-. ++..+--+-..+...|+.+.++...++.++. .||...... | +
T Consensus 200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777665333 5566666667777788888888888887765 344432111 1 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhcc
Q 005856 239 KGYVAVERADDALRIFDEMKSFDVKPNAV---TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS 315 (673)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (673)
......+++.++++-.+...+........ .+..+-.++...+++.+|++...+++. +.|+|..++..-..+|.-.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhh
Confidence 12223344444444444444331110111 122233333444455555555555444 2343444555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 005856 316 GHLNAAADVLKAMIR 330 (673)
Q Consensus 316 g~~~~a~~~~~~~~~ 330 (673)
..++.|+.-|+...+
T Consensus 355 E~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555554444
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=7.2e-07 Score=88.09 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCch--hhHHHHHH
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPAS--SLFRSVME 492 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~ 492 (673)
....+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++...... .|+. ..+..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33444445555555555555555555542 22344455555555555555555555555544211 1111 12233444
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~ 511 (673)
.+...|++++|..+++++.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 4555555555555555554
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1e-06 Score=86.94 Aligned_cols=166 Identities=15% Similarity=0.031 Sum_probs=97.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDA--DAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~ 458 (673)
....+...+...|++++|...+++..+..+.++..+..+..++...|++++|...++....... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344556677788888888888888888777777888888888888888888888888776422 1222 345567778
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CCchhhH-H--HHHHHHhccCCHHHHHHH--H-HHHHHcCC-CCCHHHHHHHHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGH-SPASSLF-R--SVMESLFEDGRVQTASRV--M-KSMVEKGV-KENLDLVAKILEALL 530 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~ 530 (673)
+...|++++|..++++...... .+..... . .++.-+...|..+.+.++ + ........ ..........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 8888888888888888754221 1111111 1 222223333432222222 1 11111100 001111124555666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 005856 531 MRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (673)
..|+.++|..+++.+..
T Consensus 276 ~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 276 GAGDKDALDKLLAALKG 292 (355)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=4.3e-05 Score=85.93 Aligned_cols=379 Identities=10% Similarity=-0.039 Sum_probs=226.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005856 166 VMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (673)
Q Consensus 166 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 245 (673)
.....+...|++.+|.......... ..-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344556677777666544433211 00011111122334456788877777766532111112222334455566789
Q ss_pred CHHHHHHHHHHHHhCC--C----CCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcH----HhHHHHHHHHh
Q 005856 246 RADDALRIFDEMKSFD--V----KPNAV--TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN----SVFMKLLGVQC 313 (673)
Q Consensus 246 ~~~~a~~~~~~~~~~~--~----~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 313 (673)
+++++..++......- . .+... ........+...|+++.|...+++..... ...+. .....+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence 9999999888775421 0 11111 12223344567899999999999987642 22122 23455666778
Q ss_pred ccCChHHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSI---PT--EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ 388 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (673)
..|+++.|...+.+...... .+ .......+...+...|+++.|...+++.++...... ..........+..+..
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH-LEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHH
Confidence 89999999999988765311 11 123445566778889999999999998876432100 0000112233445556
Q ss_pred HHHccCCHhHHHHHHHHHHHcC---CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHH--hH--HHHHH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKG---VL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDAD--AY--ICLIE 457 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~--~~--~~l~~ 457 (673)
.+...|+++.|...+....... .+ ....+..+...+...|++++|...++.+... ....... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6777899999999988876542 11 2334555677788899999999998887542 1111111 10 11224
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEAL 529 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 529 (673)
.+...|+.+.|...+............ ..+..+..++...|++++|...++++... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445678899998887765432111111 11345566778899999999999988764 3222 123455677888
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 005856 530 LMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~ 548 (673)
.+.|+.++|.+.+.+..+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988874
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=2.5e-05 Score=74.80 Aligned_cols=170 Identities=10% Similarity=0.060 Sum_probs=127.3
Q ss_pred HhHHHHHHHHHHHcC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.+.....++++.... ..-..+|..+++.-.+..-++.|..+|.++.+.+..+ ++..+++++..+|. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 556667777776665 3444578888998889999999999999999987766 77788888887774 77889999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQS-G- 549 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~- 549 (673)
--++. +..+..-....+.-+...++-..+..+|++++..+..+ ....|..++..-..-|+...++++-+++... +
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 87763 33444555667777888899999999999999885444 4578999999888999999999988877652 1
Q ss_pred -CC---CCHHHHHHHHHccCCh
Q 005856 550 -SV---PNFDSLLSVLSEKGKT 567 (673)
Q Consensus 550 -~~---p~~~~~~~~~~~~g~~ 567 (673)
.. +....+++.|.-.+.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 22 2234456666544443
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1e-07 Score=91.44 Aligned_cols=256 Identities=15% Similarity=0.147 Sum_probs=173.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 005856 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (673)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (673)
+.+.|++.+|.-.|+..+.. .|.+..+|..|.......++-..|+..+.+.++.+ +.+....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999888886 57688899999999999888889999998888875 5667777788888888888889
Q ss_pred HHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHHHHHHHhcCChhHH
Q 005856 356 AIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
|++.++..+.......-.....++...-.. ..+..........++|-.+.... ..|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886643110000000000000000 01111122233444555554444 37888888888888888889999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMKSMVE 512 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (673)
...|+.+.... +-|..+||.|...++...+.++|+..|.+.++ +.|+. .....+.-+|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888888753 33677888888888888888888888888886 45663 3445556678888888888888877665
Q ss_pred cC---------CCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 513 KG---------VKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 513 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
.. ..++..+|..|=.++...++.|-+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 41 1123345665555555555555433
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=3.8e-08 Score=91.34 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcC
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKG 463 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 463 (673)
..+...|+++.|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++. -.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 3445566666666655432 345555666667777777777777777776542 23 22223333332 223
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 542 (673)
.+.+|..+|+++.+ .+.++..+.+.+..++...|++++|.+++.+..+.++. +..++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 56777777777654 34566666666777777777777777777776665544 455666666666666665 4555666
Q ss_pred HHHHhCCCCCCHH
Q 005856 543 DLMMQSGSVPNFD 555 (673)
Q Consensus 543 ~~~~~~~~~p~~~ 555 (673)
.++.. ..|+..
T Consensus 260 ~qL~~--~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQ--SNPNHP 270 (290)
T ss_dssp HHCHH--HTTTSH
T ss_pred HHHHH--hCCCCh
Confidence 66665 445433
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.4e-07 Score=90.54 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=183.9
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 469 (673)
+.+.|+...|.-.|+..++..|.+...|..|.......++-..|+..+++..+... -+......|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHH
Confidence 46789999999999999999999999999999999999999999999999998643 36788888888999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHH-H-------HHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005856 470 TALDSMIEDGHSPASSLFRSV-M-------ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALG 540 (673)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l-~-------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (673)
+.++.-+... |.......- . ..+..........++|-.+... +.++|..+...|.-.|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999987642 110000000 0 1222233344555566555544 545788888889999999999999999
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 541 RIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 541 ~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.|+.++. .+|+ |+.++-.++...+.++|+..|.++++..|.--... ..|+-.|...|.|++|.+.|-.++.-.
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999998 8898 55666677778899999999999999865433334 479999999999999999998877521
Q ss_pred C---------CCCHHHHHHHHHHHHhcCCcchH
Q 005856 617 G---------VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 617 ~---------~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
. .+.-.+|..|=.++...++.|.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 1 11123445555555666665533
No 106
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.97 E-value=7.3e-05 Score=76.27 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=160.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 111 (673)
..+++..|++....+++.+ |....+-..-.-.+.+.|..++|..+++.....+.. |..+...+-.+|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 5678999999999999987 444444444444567999999999999887666555 8888999999999999999999
Q ss_pred HHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHH
Q 005856 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-K---------LETAI 181 (673)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~ 181 (673)
.+|++..+.. |+......+..+|.+.+++.+-.+.--++.+. .+-+...|-++++.....- . ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999998854 77777777888889988887766555555443 4446666666666655331 1 23466
Q ss_pred HHHHHHHhCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 182 RFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFA-EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
+.++.+.+.+ .--+..-....+..+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6677776654 22222333334455667899999999983 344433333455556777888889999999999999888
Q ss_pred CC
Q 005856 260 FD 261 (673)
Q Consensus 260 ~~ 261 (673)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 75
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=2.8e-06 Score=95.37 Aligned_cols=337 Identities=10% Similarity=0.025 Sum_probs=211.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCC------CC--hhhHHHHHHHH
Q 005856 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIP------TE--AGHYGILIENF 347 (673)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 347 (673)
....|++..+...+..+..... ..++.........+...|+++++...+......--. +. ......+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~-~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVL-LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHH-hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4456777776666655421111 112333344455566789999999998877543111 11 11122233456
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCC--HHhHHHHH
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD--PVAFNNLI 421 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~l~ 421 (673)
...|+++.|...++..++.. +...........+.+...+...|+++.|...+++..... .+. ..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL----PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 67899999999999986531 111100012244556666778999999999998876542 111 23456677
Q ss_pred HHHHhcCChhHHHHHHHHHHh----CCCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc--hhhHHHH
Q 005856 422 RGHSKEGNPDSAFEIVKIMGR----RGVP--R-DADAYICLIESYLRKGEPADAKTALDSMIEDG--HSPA--SSLFRSV 490 (673)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 490 (673)
..+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 788899999999999887654 2211 1 22344556667778899999999998876431 1121 2334445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKG--VKENLDL--V--AKILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLL 558 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~ 558 (673)
...+...|++++|...+..+.... ....... . ...+..+...|+.+.|...+........... ...+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 566778999999999998886541 1111111 0 1122444568899999998876554211111 12455
Q ss_pred HHHHccCChHHHHHHHHHHhcCC----CCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRD----CIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++...|++++|...+++++... .... ...+..++.++.+.|+.++|.+.+.++++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66778999999999999888642 1111 33456788899999999999999999998543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=2.5e-06 Score=84.47 Aligned_cols=220 Identities=17% Similarity=0.159 Sum_probs=175.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+|--..-..+...+...|-...|..+|++. ..|..++.+|+..|+..+|..+..+..+ .+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d 456 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPD 456 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc
Confidence 444444556778889999999999999987 2688899999999999999999988887 6789
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (673)
+..|..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCA 528 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHH
Confidence 999999998888888888888888765432 22222233345789999999998877643 3445678888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHccCChHHHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAV 571 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~ 571 (673)
..+.++++.|.+.|.......+. +...|+.+..+|.+.|+-.+|...+++..+.+..|- |........+-|.+++|+
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 88899999999999999887655 788999999999999999999999999998664443 556777777899999999
Q ss_pred HHHHHHhcC
Q 005856 572 KLLDFCLGR 580 (673)
Q Consensus 572 ~~~~~~~~~ 580 (673)
+.+.+.++.
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 999888764
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=2e-07 Score=86.58 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=37.8
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP-ADAKTALD 473 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 473 (673)
.+..|..+|+++.+..++++.+.+.+..++...|++++|.+++.+....+. -++.+...++.+....|+. +.+.+.+.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 455555555555444444555555555555555555555555555544321 2344444444444444444 33444444
Q ss_pred HHH
Q 005856 474 SMI 476 (673)
Q Consensus 474 ~~~ 476 (673)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 444
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=0.0001 Score=70.75 Aligned_cols=455 Identities=11% Similarity=0.092 Sum_probs=242.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005856 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (673)
+-|..+|+.|++-+... -++++.+.++++... ++.....|..-+..-.+..+++..+++|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 44788888888876554 888888888888865 34456778888888888888999999998887653 355666665
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHH-hCCCCCCH-HHHHHHH---HHH------HcCCCHHHHHHHHHHHHHCCCCCCc
Q 005856 238 IKGYVAV-ERADD----ALRIFDEMK-SFDVKPNA-VTYTALL---PGL------CDAGKMVEVQKVLREMVERYIPPKD 301 (673)
Q Consensus 238 l~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll---~~~------~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (673)
+..-.+. |+... ..+.|+-.. +.|+.+-. ..|+..+ ... ....+.+.+.+++++++..-+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 5543332 22222 223333332 33433322 2233333 222 222344555666666655311
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC-CCCCCc-
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ-STLDME- 379 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~- 379 (673)
+++++...=|....+ ..|..+-..++. -+...+..|.++++++.....-.... ..++|.
T Consensus 169 --------------~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 169 --------------HNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred --------------ccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 111111111111111 111111111111 11223445555555543311000000 001110
Q ss_pred -------hhhHHHHHHHHHccC------C--HhHHHHHHHHHHHcCCCCHHhHHHH-------HHHHHhcCCh-------
Q 005856 380 -------ASSYNPMIQHLCHNG------Q--TGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNP------- 430 (673)
Q Consensus 380 -------~~~~~~l~~~~~~~~------~--~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~------- 430 (673)
...|...|.--...+ . .....-++++....-...+.+|.-. .+.+...|+.
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 011222222111111 0 1112223333332222233333222 2223333433
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKG---EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (673)
+++..+++.....-..-+..+|..+.+.--..- ..+...+.+++.......--..+|..++....+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555544222223444444433211111 24555666666654322222356777777777888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCHH-HHHHHHHccCChHHHHHHHHHHhcCCCCC
Q 005856 508 KSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDL-MMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (673)
Q Consensus 508 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (673)
.++.+.+..+ ++....+++. |...++..-|.++|+- +...|..|.+. .+++.+...++-..|..+|++++.....+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9999987766 4555566665 4556788999999994 55567777753 57888888999999999999999884443
Q ss_pred --ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCcchH
Q 005856 585 --DLASYEKVLDALLAAGKTLNAYSILFKIMEKGG---VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 585 --~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
....|+.+++-=..-|+...+.++-++....-. .+.-..-.++++-|.-.+..+.-
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 367888888888889999999999888665321 11112224566667666665443
No 111
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=8.3e-06 Score=76.96 Aligned_cols=203 Identities=8% Similarity=0.004 Sum_probs=122.0
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--H
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP--A 466 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 466 (673)
+...+..++|+.+..++++..|.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 445667788888888888887777778877777777776 568888888887775433 555666555555555543 5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CC----HHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GH----VEEAL 539 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~ 539 (673)
+++.+++++++.. +-+..+|......+...|+++++++.++++++.++. +...|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 6677777777533 345667777777777777777788888877777665 555565555444433 11 23455
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
++..+++. ..|+ +..+..++.. .++..+|...+.+++..++. +...+..|++.|..
T Consensus 204 ~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55544444 3333 3334444433 13334455555555554322 33344555555554
No 112
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=6e-06 Score=77.92 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=126.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
++...++.++|+..+..+++.+ |-+..+|.....++...| .+++++..++.+.+.++. +..+|......+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 5556677888888888887766 566667777766776666 567788887777766544 555566554444455542
Q ss_pred --HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 005856 108 --QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKL----E 178 (673)
Q Consensus 108 --~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~ 178 (673)
++++.+++.+.+.. +.+..+|+....++...|+++++++.++++++.++ .+...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHH
Confidence 56677777777654 45666777777777777778888888887777643 3555666555544433 222 3
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRF----KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 243 (673)
....+..++....+. |...|+.+...+... +...+|.+.+.+....+ +.+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 455555555554332 556666666655552 23344656665554432 2244555555555553
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=7.3e-07 Score=88.15 Aligned_cols=211 Identities=15% Similarity=0.103 Sum_probs=172.8
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (673)
..+...+...|-...|..+++++ ..|..++.+|...|+..+|..+..+-.+. +|++..|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 45667778889999999999886 45788899999999999999998888773 688999988888877777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
-+++|.++.+..... .-..+.......++++++.+.|+...+.++- -..+|..+..+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 788888888765431 2223333344579999999999998887543 57888889999999999999999999
Q ss_pred HHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 544 LMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 544 ~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.... ..|+ |+++..+|.+.|+..+|...++++++.+.+ +...|....-...+.|.+++|++.+.++++-
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9988 7777 778999999999999999999999998743 5566666777788999999999999998873
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=4.8e-06 Score=88.26 Aligned_cols=236 Identities=11% Similarity=0.068 Sum_probs=164.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQ---WDEDMFEVLIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (673)
|++....+ |.+...|...+......++.+.|++++++.+..- +. --..+|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444444 6777888888888888888888888888876541 11 124567777777777777888888888887
Q ss_pred HcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cCHH
Q 005856 119 QLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGIS-LDVV 197 (673)
Q Consensus 119 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 197 (673)
+. --....|..|...|.+.+.+++|.++++.|.+. .......|..++..+.+..+-+.|..++.++.+.-.. -...
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 73 233456778888888888888888888888765 3346667888888888888888888888887765211 1234
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALLPG 275 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~ 275 (673)
...-.+..-.+.|+.+.+..+|+.....- +.-...|+..++.-.+.|+.+.+..+|++....++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 44555566677888888888888877652 335677888888888888888888888888877655543 344555544
Q ss_pred HHcCCCHHH
Q 005856 276 LCDAGKMVE 284 (673)
Q Consensus 276 ~~~~~~~~~ 284 (673)
--..|+-..
T Consensus 1681 Ek~~Gde~~ 1689 (1710)
T KOG1070|consen 1681 EKSHGDEKN 1689 (1710)
T ss_pred HHhcCchhh
Confidence 444454333
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=1.3e-06 Score=80.25 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
.+..+..++..+...|++++|...++.+...... | ...++..+..++...|++++|...++++.+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555543211 0 012344455555555555555555555554
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=5.2e-06 Score=88.01 Aligned_cols=213 Identities=11% Similarity=0.141 Sum_probs=140.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
|.++..|-..|....+.++.+.|.++.++++..-- +++. .--...|.++++.-...|.-+...++|+++.+.. ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN-~REe---eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTIN-FREE---EEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC-cchh---HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-ch
Confidence 44455666677777777778888877777764210 0000 0112356666666666677777777777776653 22
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CchhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PASSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 492 (673)
..+|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+.++-+.|..++.+.++.-.. -........+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 346777777888888888888888877764 2245667777777777777777788888777763211 12233344445
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.-.+.|+.+++..+|+..+...++ ....|+.+++.-.++|+.+.+..+|+++.+.++.|.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 556778888888888877776555 567777777777778888888888888777666665
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=9.7e-06 Score=85.34 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 265 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
+...+..++..+...+++++|.++.+...+. .|+....+..++..+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3446666777777777777777777766553 454555555555566666654444433 2 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (673)
..+....++..+..++..+.+.. -+...+..+..+|.+.|+.++|..+++++.+..+.++.+.|.+...|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 22223333333333333332211 12336667777788888888888888888888777888888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 504 (673)
+.. ++++|.+++..+... +...+++.++.++|.++.... |+.. +.-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~ 207 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFL 207 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccc---------------hHHH
Confidence 877 888888777776653 555667777888888877632 3221 1112
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 505 RVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 505 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.+.+.+... +..--..++..+...|...++|++++++++.+++ ..|+
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~ 255 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNK 255 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCc
Confidence 222222222 2222345566667777777888888888888888 4444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=2.5e-06 Score=74.75 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457778887776444332211 11 0122367778888888888888766 788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHH-HccCC--hHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 005856 536 EEALGRIDLMMQSGSVPNF----DSLLSVL-SEKGK--TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI 608 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~----~~~~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~ 608 (673)
++|+..+++... ..|+. ..++.++ ...|+ .++|..+++++++.+++ +...+..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888 55652 3455544 45666 59999999999998866 566777899999999999999999
Q ss_pred HHHHHHcCCCCC
Q 005856 609 LFKIMEKGGVTD 620 (673)
Q Consensus 609 ~~~~~~~~~~~~ 620 (673)
++++++...+.+
T Consensus 167 ~~~aL~l~~~~~ 178 (198)
T PRK10370 167 WQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhhCCCCc
Confidence 999998765444
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=2.5e-06 Score=88.88 Aligned_cols=133 Identities=12% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----H
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----D 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~ 555 (673)
+..+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++.+. ..|+. .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4455677777778888888888888888888887555 566667778888888888888888888877 55653 3
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..++.+.|++++|..+|++++..++. +...+..++..|...|+.++|...|+++++..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3555666788888888888888875432 35566678888888888888888888887754
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.6e-06 Score=78.31 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=124.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--H
Q 005856 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS----SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--D 520 (673)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 520 (673)
.....+..+...+...|++++|...++++.... |+. ..+..+..++...|++++|...++++.+..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456677888888899999999999999988643 332 35677778888999999999999999887553222 2
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 521 LVAKILEALLMR--------GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 521 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
.+..+..++... |++++|++.++++.. ..|+......++...+..... . ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---L-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---H-----------HHHHHHH
Confidence 455566666654 678888888888887 445532222221111111110 0 0112356
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 593 LDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
+..+.+.|++.+|+..+++++.... +.....+..++.++.+.|++++|....+.+.+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888888888888888887542 22356667788888888888888776666553
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=8.4e-06 Score=85.05 Aligned_cols=235 Identities=11% Similarity=0.103 Sum_probs=159.5
Q ss_pred chhhHHHHHHHHHccCCHhHHH-HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAE-IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
++.....+=.+.+..|..++|- +++.++. .++..........+++.-.....+ ..+.+...+..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 3434444445566677766663 3443332 233333333333333333333322 25567899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (673)
...+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....+. +......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchH
Confidence 999999999999999999874 465 456667788899999999999999999998776 7788888999999999999
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|..+|+++.. ..|+ +..+...+-..|+.++|...|+++++.. .+....|+.+ .++...-..++++.
T Consensus 172 ~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 172 QADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 99999999998 3344 4457777778999999999999999874 2223333222 23344444555554
Q ss_pred HHcC----CCCCHHHHHHHHHHHHhcCCc
Q 005856 613 MEKG----GVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 613 ~~~~----~~~~~~~~~~l~~~~~~~g~~ 637 (673)
--.+ .+.....+.+.+.-+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 3222 223456666777777655443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=7.7e-06 Score=71.18 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
+..+ ......+.-.|+-+....+........ +.+.......+....+.|++..|...|.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 445555555566555555555543322 2244455556666666666666666666665543 455666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 005856 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (673)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 214 (673)
+|.+.|+++.|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 6666666666666666665541 223444555555566666666666666666554322 55555555556666666666
Q ss_pred HHHHHHH
Q 005856 215 AEKLFAE 221 (673)
Q Consensus 215 a~~~~~~ 221 (673)
|.++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 6665544
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.001 Score=68.30 Aligned_cols=504 Identities=14% Similarity=0.092 Sum_probs=276.8
Q ss_pred CCCChHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 19 PQFDHNLVYN--VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 19 ~~~~~~~~~~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
|+.....++. ++.+.|+.++|..+++...... +.|..++..+-.+|...+..++|..+|++..... |+......
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHH
Confidence 4555555555 6678999999998888776554 5688899999999999999999999999998764 56888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhCC-CCCCHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR----------YMMAKRYFNKMLSEG-IEPTRHTYN 165 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-~~~~~~~~~ 165 (673)
+..+|.+-+++..-.+.--++-+ ..+.+...+=++++.+...-. ..-|...++.+.+.+ .--+..-..
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 88999998888664444434333 123444444444554443311 234556667776553 222222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 005856 166 VMLWGFFLSLKLETAIRFFED-MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY--- 241 (673)
Q Consensus 166 ~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 241 (673)
.....+-..|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|.. | |...+..+
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~kl 270 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHH
Confidence 333445577899999999843 333323334555567778888899999999999998887632 2 22222211
Q ss_pred -------------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHCCCCCCcHHhH
Q 005856 242 -------------VAVERADDALRIFDEMKSFDVKPNAVTYTALLPG---LCDAGKMVEVQKVLREMVERYIPPKDNSVF 305 (673)
Q Consensus 242 -------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (673)
...+..+...+...+..... ..+ .|..-+.+ +..-|+.+++...|-+-.. +...+
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rg--p~LA~lel~kr~~~~gd~ee~~~~y~~kfg------~kpcc 341 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRG--PYLARLELDKRYKLIGDSEEMLSYYFKKFG------DKPCC 341 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccC--cHHHHHHHHHHhcccCChHHHHHHHHHHhC------CCcHh
Confidence 11122333333333332221 111 22222222 2345777776544432211 11222
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCChh----h---HHHHHHHHHhcCC-----HHHHHHHHHHHHH---chhcc
Q 005856 306 MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG----H---YGILIENFCKAEM-----YDRAIKLLDKLVE---KEIIL 370 (673)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~---~~~l~~~~~~~~~-----~~~a~~~~~~~~~---~~~~~ 370 (673)
..=+..|...=..+.-..++....... ++.. . +...+..-.-.|. -+....++.+... .+..
T Consensus 342 ~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls- 418 (932)
T KOG2053|consen 342 AIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS- 418 (932)
T ss_pred HhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc-
Confidence 222233333333333334443333221 1111 0 1111111111121 2222333322211 1100
Q ss_pred CCCCCCCCchh---------hHHHHHHHHHccCCHh---HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 005856 371 RPQSTLDMEAS---------SYNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVK 438 (673)
Q Consensus 371 ~~~~~~~~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 438 (673)
-..+.-|+.. +.+.+++.|-+.++.. +|+-+++......+.+..+-..+++.|+-.|-+..|.++|+
T Consensus 419 -~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 419 -LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred -ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 1111222222 3356778888887655 56666666666778888888999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHH---HHHHHcCC
Q 005856 439 IMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM---KSMVEKGV 515 (673)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~ 515 (673)
.+.-.++..|...|. +...+...|++..+...+....+.--..-..+-..+..+ .+.|.+....++. +++.....
T Consensus 498 tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q 575 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQ 575 (932)
T ss_pred hcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHH
Confidence 987766666655443 344556677888777777766542111111222233333 3456665554432 22222111
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 516 KENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 516 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..-..+-+..+..+...++++.-...++.|.
T Consensus 576 ~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 576 KWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1112223455666667777777766666555
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=3.3e-06 Score=69.87 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
.++++.++.+ +..+......+...|++++|...++..+. ..|+ +..++.++...|++++|...+++++..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555542 22344566677777777777777777776 4454 344666666778888888888877777
Q ss_pred CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 581 ~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+|. +...+..++.++...|++++|++.+++++...
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 654 45555677778888888888888888877653
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.4e-05 Score=69.68 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (673)
..+-..+...|+-+....+....... .+.+......++....+.|++.+|...+++... .-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 33334444444444444443333221 112333333344444444444444444444443 2234444444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|+++.|..-|.+..+..+. +...++.+...|.-.|+.+.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444222 223334444444444444444444444443
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=2.1e-05 Score=82.84 Aligned_cols=245 Identities=13% Similarity=0.075 Sum_probs=147.1
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+..|+..+...+++++|..+.+...+..|.....|..++..+...++.+.+..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 4557888999999999999999999988888777777777777778777776666555 222 22
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
.....++.-...+...+.+. .-+...+..+..+|.+.|+.++|..+++++++.++. |..+.+.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22223332222233333332 234446667777777888888888888888887754 777777788777777 88888
Q ss_pred HHHHHHHHhCCC---CCC-HHHHHHHHHc--cCChHHHHHHHHHHhcC-CCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 539 LGRIDLMMQSGS---VPN-FDSLLSVLSE--KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 539 ~~~~~~~~~~~~---~p~-~~~~~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
++++.+.+..-+ .++ ...+..-++. -.+.+.-..+.++.... +..--...+..+...|-+.++|++++.+++.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 887777665211 011 1111111111 12233333333333322 1111123344555666678889999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005856 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (673)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (673)
+++...... .....++.+|. ++++.-..+.+.+
T Consensus 249 iL~~~~~n~-~a~~~l~~~y~--~kY~~~~~~ee~l 281 (906)
T PRK14720 249 ILEHDNKNN-KAREELIRFYK--EKYKDHSLLEDYL 281 (906)
T ss_pred HHhcCCcch-hhHHHHHHHHH--HHccCcchHHHHH
Confidence 998764433 34455777776 4444433333333
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=4.6e-06 Score=73.15 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=75.1
Q ss_pred cCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH-HHcCC--HHHH
Q 005856 69 VGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI-LRRGR--YMMA 145 (673)
Q Consensus 69 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~g~--~~~A 145 (673)
.++.+++...++..++.++. +...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44556666666666555433 66677777777777777777777777776654 34555666665543 45555 4677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
..++++..+.++ -+..++..+...+...|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777766532 25556666666666777777777777777665
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.5e-05 Score=65.88 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=24.0
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.+.+|.-+|+++.+..+|++.+.+....++...|++++|..+++.+...
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444455555544444444445555555555555555555555544443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00015 Score=63.34 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=82.1
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KG 463 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 463 (673)
..|++.+++++|++..+... +......=+..+.+..+++-|...++.|.+- .+..|.+.|..++.+ .+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 34555666666665555411 2222222333444555666666666666653 244455555555443 24
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-HHHH
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA-LGRI 542 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~ 542 (673)
...+|.-+|++|-+ ...|+..+.+....++...|++++|..+++.++....+ ++.+...++.+-...|...++ .+.+
T Consensus 188 k~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45666667777654 24566666666666666677777777777777666554 455554454444445544333 3455
Q ss_pred HHHHh
Q 005856 543 DLMMQ 547 (673)
Q Consensus 543 ~~~~~ 547 (673)
.++..
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55554
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00011 Score=63.58 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchh-hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEAS-SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (673)
.+.++..+++..++... ......++.. .|..++-+....|+.+.|...++.+....|.+..+-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~----k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYS----KSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHh----hhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 34556666666554432 1111223332 233344445556666666666666666655555544444444555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
+++|.++++.+.+.+ +.|..++..=+...-..|+.-+|++-+....+ -+..|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666554 33445555444444455555556555555554 2445566666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHh
Q 005856 510 MVEKGVKENLDLVAKILEALLMRG---HVEEALGRIDLMMQ 547 (673)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 547 (673)
++-..+. ++..+..+...+.-.| +..-|.++|.+.++
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6554332 3444444444444333 34445555555555
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=8.3e-06 Score=67.52 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+......+...|++++|...|+.++...+. +...|..++.++...|++++|+..|++... ..|+ +..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 334455566666666666666666665444 556666666666666666666666666666 3343 234555556
Q ss_pred ccCChHHHHHHHHHHhcCCC
Q 005856 563 EKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|++++|+..++++++..|
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66677777777766666543
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.6e-07 Score=53.71 Aligned_cols=30 Identities=47% Similarity=0.939 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
+.||..+|++||.+|++.|+.++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00082 Score=64.29 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTA 503 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 503 (673)
...|.+++|+..++.+... .+-|+..+......+...++.++|.+.++++... .|+ ......+..++.+.|++++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555555443 2234444455555555555555555555555542 233 33344445555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 504 SRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
+.+++......+. ++..|..|.++|...|+..+|...
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHH
Confidence 5555555554333 455555555555555555555443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00017 Score=68.78 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=132.6
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
++.......+.+......-..+..++..-.+ +--...+....-.+...|++++|+..++.++.. .+-|...+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 4455555555544333332233222222222 112333444445566789999999999998873 344555566667
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHccCChHH
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN-FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~~~~~~g~~~~ 569 (673)
+.+.+.|+..+|.+.++++....+. ....+..+..+|.+.|++.+|+.++++... .+..|+ |..+..+|...|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 7889999999999999999988554 255666788999999999999999987776 344455 6778888888888777
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG--GVTDWKSSDKLIAG 630 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 630 (673)
|... .++.|.-.|++++|+.++.++.+.. +.++|.-+...+..
T Consensus 427 a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 427 ALLA------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHHH------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 6433 4566777999999999999988754 45666555544443
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=2.9e-07 Score=53.48 Aligned_cols=32 Identities=56% Similarity=0.867 Sum_probs=18.1
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
|+.||..+|+.++++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00022 Score=61.79 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh
Q 005856 244 VERADDALRIFDEMKS---FD-VKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (673)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++..+- |.+..+...-...+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456677777766643 23 344443 45556666677788888888888877763 54555555555556667788
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
++|+++++.+++.+ |.|..++-.-+......|+.-+|++-+...++.. ..|...|.-+...|...|++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---------~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---------MNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhHhHHHH
Confidence 88888888877765 5555556555556666677667777776666554 2466777777777777788888
Q ss_pred HHHHHHHHHHcCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 005856 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEG---NPDSAFEIVKIMGRR 443 (673)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~ 443 (673)
|.-.++++.-..|.++..+..+...+.-.| +...|.++|.+..+.
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 877777777777777777777766654443 455567777777664
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.1e-05 Score=65.50 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=71.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHccCChH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTI 568 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~ 568 (673)
..++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|.. ..+..++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36677777777777776643321 222334556667777777777777777775433332 22555666777777
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|+..++..... ...+..+...+++|.+.|++++|++.|+++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777642221 223455567778888888888888877764
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=2e-05 Score=65.01 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005856 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (673)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 121 (673)
.|+.+...+ |.+......++..+...|++++|.+.++.+...++ .+...+..+...+...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344454443 34445555566666666666666666666655432 255666666666666666666666666665543
Q ss_pred CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
+.+...+..+...+...|+++.|...|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555666666666666666666666553
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=2.9e-05 Score=64.64 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVAKI 525 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 525 (673)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777643 222 122333446677788888888888888877544332 233456
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHccCChHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (673)
...+...|++++|+..++.....+..|. ....++++...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777888888888888866444344443 3346777778888888888887653
No 140
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.30 E-value=0.00021 Score=58.56 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=108.8
Q ss_pred CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC-HH
Q 005856 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN-FD 555 (673)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~ 555 (673)
..|+...-..+..++.+.|++.+|...|++...--+-.|....-.+..+....+++..|...++.+.+.+ -.|+ ..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3477777778888999999999999999998887666688888889999999999999999999888843 3444 34
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+...|...|++++|...|+.+++.-+.+....| ++..+.+.|+.++|...+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHH
Confidence 5788889999999999999999987666555555 68889999999998877766655
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=2.3e-05 Score=64.71 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=64.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.++++++.++. +......++..+...|++++|.+.++.+.. ..|+ +..++..+...|++++|..+++++++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444333 334445566666666777777777766665 2232 2345555556677777777777666665
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+. +...+..++.++...|++++|.+.++++++..
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33 34445567777777777777777777777653
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=7.7e-05 Score=60.49 Aligned_cols=96 Identities=10% Similarity=-0.065 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+......+...+...|++++|.++|+-+.. +.|. +..++-++...|++++|+..+.++...+++ ++..+.+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 345556677778889999999999988877 5565 345666677889999999999999988863 667777899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 005856 594 DALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.+.|+.+.|.+.|+.++...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999888654
No 143
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00019 Score=66.66 Aligned_cols=259 Identities=11% Similarity=-0.027 Sum_probs=161.4
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHH
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (673)
..+.+...+..|+..+....+..+.+..-|..-+..+...+++++|.--.+.-.+.... ....+...-.++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 34556778888888888888888877777777777777778888777666554432110 11122222333333333333
Q ss_pred HHHHHH---------------HHHHcCC-CCchhhHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 468 AKTALD---------------SMIEDGH-SPASSLFRSVM-ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 468 A~~~~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
|.+.++ ....... +|.-.++..+- ..+...|++++|...--.+++.+.. +......-..++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccc
Confidence 332222 1111111 12223343332 2455678899998888888777544 3443333344556
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHccCChHHHHHHHHHHhcCCCCC---ChHhHHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFDSL----------------LSVLSEKGKTIAAVKLLDFCLGRDCII---DLASYEK 591 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~----------------~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 591 (673)
-.++.+.|...+++.+. ..|+.... +.-..+.|++..|.+.+..++..+|.+ ....|..
T Consensus 215 y~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 67788999999988887 66663321 223346899999999999999887654 3555777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
.+.+..+.|+.++|+.-++.+++-.. .-...+..-..|+...++|++|..=.+...+.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77888889999999999998887642 234444445566777888888855544444444
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=9e-05 Score=71.44 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=84.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVL 561 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~ 561 (673)
....++..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|++++++.++ ..|.... ....|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 34455555666778888888888887764 33 334467777777777888888877776 3343222 33445
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...++++.|+.+.++++...|. +...|..|+.+|.+.|++++|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 5778888888888888887543 577777888888888888888887776653
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00045 Score=64.28 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=87.8
Q ss_pred HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 468 (673)
++.-.|+++.|...--.+++....+......-..++-..++.+.|...|++....+ |+...-... -.-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~ 245 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMM 245 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhh
Confidence 34445666666666666665554444433333334444556666666666655532 332211111 001
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
.+.++.+.+.| .-..+.|++..|.+.+.+.+.. +.+++...|.....+..+.|+.++|+.-.+..
T Consensus 246 ~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 11111111111 2245567777777777777665 33445556666666667777777777776666
Q ss_pred HhCCCCCCHH--HH--HHHHHccCChHHHHHHHHHHhcCC
Q 005856 546 MQSGSVPNFD--SL--LSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 546 ~~~~~~p~~~--~~--~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
++ +.|.+. .+ ..++...+++++|++.++++.+..
T Consensus 314 l~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 314 LK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65 555532 12 222334667777777777777654
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00018 Score=69.48 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
...|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++.++.. +-+...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667778888888888887753 44 34456777777777888888888887632 3345555555666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.++++.|..+.+++.+..+. +..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888887544 67788888888888888888887776544
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00052 Score=55.79 Aligned_cols=94 Identities=10% Similarity=-0.099 Sum_probs=78.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
.+...+...|++++|..+|+-....+|. +...|..|+-++...|++.+|+..|.++..-. +.++..+.++..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3555666899999999999988887755 44555689999999999999999999999875 468888999999999999
Q ss_pred CcchHHHHHHHHHhhh
Q 005856 636 NTKQADILSRMIRGEM 651 (673)
Q Consensus 636 ~~~~a~~~~~~~~~~~ 651 (673)
+.+.|....+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999977655555455
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=0.00098 Score=60.59 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=111.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh-h---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS-L---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
+...+-.....+...|++++|.+.|+.+...- |+.. . ...++.++.+.+++++|...+++.++..+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 44444445556677888888888888888643 3322 1 2355667788888888888888888874432222222
Q ss_pred HHHHHHH--cCC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 524 KILEALL--MRG---------------H---VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 524 ~l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
....+++ ..+ + ..+|+..++++++ .-|+. .-..+|...+..+.+.-
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S----------~ya~~A~~rl~~l~~~l-- 174 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNS----------QYTTDATKRLVFLKDRL-- 174 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCC----------hhHHHHHHHHHHHHHHH--
Confidence 2222221 111 1 2345556666655 33442 22334433333221110
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEK--GGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
...-..++.-|.+.|.+.-|+.-++.+++. +.+.....+..++.+|...|..++|......+..
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 111225778899999999999999999974 2233455666788999999999999887777653
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=6.3e-05 Score=67.01 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=40.7
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
.+.++|.+|+..|.+.++ +.|. +..-.-+|.+.|.++.|++-.+.++..++. ....|..|+.+|+..|++.+|
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 344455555555555555 4443 122333444555555555555555554322 344455555555555555555
Q ss_pred HHHHHHHHHc
Q 005856 606 YSILFKIMEK 615 (673)
Q Consensus 606 ~~~~~~~~~~ 615 (673)
++.|+++++-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 5555555543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.0003 Score=56.49 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVL 593 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 593 (673)
++..++..+.+.|++++|.+.++.+.... ..|. ...++.++.+.|++++|..+++.++...+.. ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666677777777777777766521 1111 2235666667777777777777777654442 234556677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 005856 594 DALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.+.|++++|.+.+++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777888888888887777764
No 151
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.91 E-value=0.0001 Score=68.21 Aligned_cols=264 Identities=14% Similarity=0.107 Sum_probs=166.7
Q ss_pred HHHHccCCHhHHHHHHHHHHHcCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--Hh--CCCC-CCHHhHHHHHHH
Q 005856 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPV----AFNNLIRGHSKEGNPDSAFEIVKIM--GR--RGVP-RDADAYICLIES 458 (673)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~--~~--~~~~-~~~~~~~~l~~~ 458 (673)
.-+|+.|+......+|+..++.|..|.. +|..|..+|...+++++|+++...= .. .|-. -...+-..|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3468999999999999999999855544 5778889999999999998865421 11 1100 012223334445
Q ss_pred HHhcCChHHHHHHHHHHH----HcCCC-CchhhHHHHHHHHhccCC--------------------HHHHHHHHHHHHHc
Q 005856 459 YLRKGEPADAKTALDSMI----EDGHS-PASSLFRSVMESLFEDGR--------------------VQTASRVMKSMVEK 513 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~ 513 (673)
+--.|.+++|+..-.+-+ +.|-. .....+..+...|...|+ ++.|.++|.+-++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 555677777765444332 21211 122344455555544332 34455555543332
Q ss_pred ----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH----hCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC
Q 005856 514 ----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMM----QSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 514 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (673)
|-.. --..|..+...|+-.|+++.|+..-+.-+ +.|.+.. +..+..++.-.|.++.|.+.+++.+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 12345667777778889999997765322 2343332 345777778899999999999887654
Q ss_pred CCC-----CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhh
Q 005856 581 DCI-----IDLASYEKVLDALLAAGKTLNAYSILFKIMEK----GG-VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (673)
Q Consensus 581 ~~~-----~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (673)
..+ .......+|+..|.-..++..|+++..+=+.- ++ .-..+++-.|+.++...|..+.|..+.+.-...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 222 12344458999999999999999998875431 11 235667777999999999999997776655544
Q ss_pred h
Q 005856 651 M 651 (673)
Q Consensus 651 ~ 651 (673)
.
T Consensus 345 s 345 (639)
T KOG1130|consen 345 S 345 (639)
T ss_pred H
Confidence 4
No 152
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.90 E-value=0.02 Score=53.29 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=155.2
Q ss_pred hcCCHHHHHHHHHHHHHchhccCCCCCCCCch--hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA--SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
-.|+++.|.+-|+.|.+. |.. -.+..+.-...+.|..+.|..+-+.....-+.-+..+...+...+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-----------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-----------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA 200 (531)
T ss_pred hcCchHHHHHHHHHHhcC-----------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence 346666666666666431 111 1223333333456777777777777766666666777778888888
Q ss_pred cCChhHHHHHHHHHHhC-CCCCCHHh--HHHHHHHH--H-hcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCC
Q 005856 427 EGNPDSAFEIVKIMGRR-GVPRDADA--YICLIESY--L-RKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGR 499 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~-~~~~~~~~--~~~l~~~~--~-~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 499 (673)
.|+++.|+++.+.-... -+.++..- -..|+.+- . -.-+...|...-.+..+ +.|+... ......++.+.|+
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccc
Confidence 88888888888765542 22333321 11122211 1 12345566666555554 4465432 3344567889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHH----HHHHHHHccCChHHHHHHH
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFD----SLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~~~~~~g~~~~A~~~~ 574 (673)
..++-.+++.+-+..+.|++. .+..+.+.|+ .++.-+++..+ ..++|+.. .+..+-...|++..|..--
T Consensus 279 ~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 279 LRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred hhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999887766543 2333445554 33333333332 12667632 3444555788998888877
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHH
Q 005856 575 DFCLGRDCIIDLASYEKVLDALLA-AGKTLNAYSILFKIMEKGGVTDWKS 623 (673)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 623 (673)
+.+... .|....|..|+++-.. .|+-.++...+-+.+..+..|.|+.
T Consensus 353 eaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 353 EAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 766664 4556677777777665 4999999999999998877777754
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=2.3e-05 Score=57.97 Aligned_cols=78 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 564 KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
.|+++.|+.+++++++..+. ++...+..++.+|++.|++++|++++++ .+.+. ......-.++.++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555666666555555442 1233333456666666666666666655 22111 122222234555666666666644
Q ss_pred H
Q 005856 643 L 643 (673)
Q Consensus 643 ~ 643 (673)
.
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00026 Score=63.18 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..++. -...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 445556666666666665521 123333444445556666666666665555555433 344555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHH
Q 005856 539 LGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~ 555 (673)
++.|++.++ +.|++.
T Consensus 169 ~~aykKaLe--ldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNE 183 (304)
T ss_pred HHHHHhhhc--cCCCcH
Confidence 666665555 555544
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.7e-05 Score=45.54 Aligned_cols=33 Identities=33% Similarity=0.701 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (673)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555666666666666666666655555554
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.82 E-value=0.00064 Score=53.34 Aligned_cols=91 Identities=22% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHH
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDAL 596 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l 596 (673)
.+..++-..|+.++|+.+|++....|.... ...+...+...|++++|+.++++.+...|.. +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 355566677777777777777777665544 2235666667777777777777776654331 122223455667
Q ss_pred HhcCChHHHHHHHHHHHH
Q 005856 597 LAAGKTLNAYSILFKIME 614 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~ 614 (673)
...|+.++|++.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777766654
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.03 Score=52.25 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHH----HHHHHHhccCC
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLP--GLCDAGKMVEVQKVLREMVERYIPPKDNSVFM----KLLGVQCKSGH 317 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 317 (673)
.|+-..|.+.-.+..+. +..|......++. +-.-.|+++.|.+-|+.|.. ++.+.. .|.-...+.|+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhccc
Confidence 34555555544433211 2233333333333 22345777777777777765 222222 12222235677
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchh--hHHHHHHHHH---c
Q 005856 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHLC---H 392 (673)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~---~ 392 (673)
.+.|..+-+.....- +.-.......+...+..|+|+.|+++++...+...+ .++.. .-..++.+-+ -
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHh
Confidence 777777666665542 334455667777777788888888777766543221 12211 1111222111 1
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
..+...|...-....+..+.-...-..-..++.+.|+..++-.+++.+-+.. |.+..+..++ +.+.|+. ++.-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHH
Confidence 2244555555555554443333344445667778888888888888887754 3333333222 2344443 33333
Q ss_pred HHHHHc-CCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCC
Q 005856 473 DSMIED-GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEALGRIDLMMQSG 549 (673)
Q Consensus 473 ~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 549 (673)
++..+. ..+|| ......+..+....|++..|..--+..... .|....|-.+...-. ..|+-.++...+-+.+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 333211 12343 344555566666777777776655555443 445555555555443 3477777777777777777
Q ss_pred CCCCHH
Q 005856 550 SVPNFD 555 (673)
Q Consensus 550 ~~p~~~ 555 (673)
-.|.|.
T Consensus 394 rdPaW~ 399 (531)
T COG3898 394 RDPAWT 399 (531)
T ss_pred CCCccc
Confidence 777643
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.79 E-value=5e-05 Score=44.96 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT 160 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 160 (673)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=4.7e-05 Score=44.70 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (673)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=5e-05 Score=44.57 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEP 159 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 159 (673)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=6.4e-05 Score=55.60 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
.|+++.|+.+|+.+.+..+..++...+..++.++.+.|++++|..+++. .+.+.. +......+..++.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5778888888888887762112445566678888888888888888877 333222 34555556777888888888888
Q ss_pred HHHH
Q 005856 113 IFDI 116 (673)
Q Consensus 113 ~~~~ 116 (673)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0013 Score=52.65 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+...+...|++++|...++.+....+.. ....+..+..++...|++++|...++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444444432211 122333344444444444444444444444
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0014 Score=59.17 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHH---ccCChHHHHHHHH
Q 005856 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLS---EKGKTIAAVKLLD 575 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~---~~g~~~~A~~~~~ 575 (673)
+....-++.-+..++. |...|..|...|...|+.+.|...|.+... .|..|+. ..+..++. ......++..+|+
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3334444555555665 888999999999999999999999998888 2333332 22344333 2346789999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
+++..++. +......|+..+...|++.+|...++.|++...+.+
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99998765 455556789999999999999999999999765544
No 164
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.74 E-value=0.045 Score=52.29 Aligned_cols=139 Identities=11% Similarity=0.139 Sum_probs=85.3
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHH------HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH--
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRET------HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-- 100 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-- 100 (673)
+|..++++++|.++|.++.+.. ..++.. -..++++|... +.+.....+....+... ...|..+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~---~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG---KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC---CchHHHHHHHHH
Confidence 7889999999999999997654 333332 33566666543 45555544444433311 2223333332
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCccC------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH
Q 005856 101 YGKKGIVQESVKIFDIMKQL--GVERS------------VKSYDALFKLILRRGRYMMAKRYFNKMLSE----GIEPTRH 162 (673)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~--g~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 162 (673)
+-+.+.++.|.+.+...... +..+. -..-+..+..+...|++.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34778999999888777654 21111 111244566778899999999998888654 2336788
Q ss_pred HHHHHHHHHHh
Q 005856 163 TYNVMLWGFFL 173 (673)
Q Consensus 163 ~~~~l~~~~~~ 173 (673)
+|+.++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88876555543
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00083 Score=65.22 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005856 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR--GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (673)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (673)
+......++..+....+++.+..++-..... ....-..+..++++.|...|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3333444444444444444444444444332 11111222234555555555555555555554455555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 005856 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (673)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (673)
|..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555554444434444444444444433
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.066 Score=53.93 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHHHcCC
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI----------ESYGKKGIVQESVKIFDIMKQLGV 122 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----------~~~~~~~~~~~a~~~~~~~~~~g~ 122 (673)
.|.+..|..+.......-.++-|...|-+.... +.......+- ..-+--|.+++|.++|-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578888988888777666777777776555432 1111111111 11122367777777777776532
Q ss_pred ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 005856 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (673)
..+..+.+.|+|-...++++.--.. +.+.-...|+.+...++....+++|.+++..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2455666677776666655432110 00111345666666777777777777776553221 13
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
.+.++.+..++++-+.+.+.+. .+....-.+..++.+.|.-++|.+.|-+.. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 4555555555555555444443 255566667777777777777776663322 12 223445666667
Q ss_pred HHHHHHHHHH
Q 005856 282 MVEVQKVLRE 291 (673)
Q Consensus 282 ~~~a~~~~~~ 291 (673)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777766544
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.0011 Score=64.35 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=38.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
+...|++++|+..|+++++.++. +...|..++.+|...|++++|+..+++++. +.|+ +..++.++...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33444555555555555444333 344444444444445555555555444444 2333 2223334444444444
Q ss_pred HHHHHHHHhcCC
Q 005856 570 AVKLLDFCLGRD 581 (673)
Q Consensus 570 A~~~~~~~~~~~ 581 (673)
|+..|++++..+
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 444444444443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.0089 Score=56.28 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHcC-CCHHHHHHHHHHHHHC----CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----h-hhHHHH
Q 005856 275 GLCDA-GKMVEVQKVLREMVER----YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE-----A-GHYGIL 343 (673)
Q Consensus 275 ~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l 343 (673)
.|... |+++.|.+.|++..+. +....-...+..++..+.+.|++++|..+|+++.......+ . ..+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5555555555554432 10000122344455556666666666666666654322111 1 111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005856 344 IENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
+-++...|++..|...+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3345556677777777776643
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0032 Score=54.29 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
.+..+...+...|++++|...+++..+....+. ...+..+...+...|++++|...++++++..+. +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344445555555555555555555554321111 234445555556666666666666666555332 34444455555
Q ss_pred HHcCCCHHHHH
Q 005856 529 LLMRGHVEEAL 539 (673)
Q Consensus 529 ~~~~g~~~~A~ 539 (673)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.66 E-value=0.00091 Score=64.95 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=47.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
.+..+++.+....+.+.+..++.+..... ..-+.|..++++.|...|..+++..+++.=...|+=||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33444444444444444444444444332 112233344444444444444444444444444444455555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhh
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
+.+.|++..|.++...|...+...+..|
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 5555555444444444443333333333
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.001 Score=64.76 Aligned_cols=91 Identities=8% Similarity=-0.073 Sum_probs=64.7
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
..+...|+++.|++.|+.+++.+ |.+...|..+..++...|++++|+..++.+++.... +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 45566777777777777777766 566777777777777777777777777777665432 566666677777777777
Q ss_pred HHHHHHHHHHHHcC
Q 005856 108 QESVKIFDIMKQLG 121 (673)
Q Consensus 108 ~~a~~~~~~~~~~g 121 (673)
++|...|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777643
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.62 E-value=0.015 Score=57.61 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=43.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HH---------
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FD--------- 555 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~--------- 555 (673)
+...+...+.+...+.-|.++|.+|-.. ..++......++|++|..+.++.-+ ..|+ +.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 3444444444555556666666665221 2355556666677777766665444 3333 11
Q ss_pred ----HHHHHHHccCChHHHHHHHHHHhc
Q 005856 556 ----SLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 556 ----~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
..-.++.++|+..||..++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122234456777777777765544
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00095 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~ 118 (673)
+...+...+++++|...|+...
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0025 Score=54.91 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD--EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
....+..++..+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566677777777888888888877765433222 3566677777777788888888777777643 2345555566
Q ss_pred HHHHHHcCCHHHH
Q 005856 133 FKLILRRGRYMMA 145 (673)
Q Consensus 133 ~~~~~~~g~~~~A 145 (673)
...+...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 6666666654433
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0012 Score=49.50 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-ccCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGV-ERSVKSYDALFKLILRRG--------RYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (673)
.|..+...+++...-.+|+.+++.|+ -|++.+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666555431 123445556666666666666666666
Q ss_pred HHHHH
Q 005856 168 LWGFF 172 (673)
Q Consensus 168 ~~~~~ 172 (673)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0012 Score=49.65 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=42.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 204 NGYNRFKKMDEAEKLFAEMKEKNI-EPTVISYTTMIKGYVAVE--------RADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 555555555555544332 23345566677776677777777777766
Q ss_pred HHHc
Q 005856 275 GLCD 278 (673)
Q Consensus 275 ~~~~ 278 (673)
.+.+
T Consensus 113 ~Llk 116 (120)
T PF08579_consen 113 SLLK 116 (120)
T ss_pred HHHH
Confidence 5543
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.0041 Score=58.52 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 005856 456 IESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~ 475 (673)
...|...|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 33455555666555555554
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0048 Score=62.82 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=38.4
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
...|++++|...++++++.++ +...|..++..+...|+.++|.+.++++..-
T Consensus 431 ~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 346778888888888877764 4566777777778888888888888777754
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.022 Score=47.21 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CCCHHH
Q 005856 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---KENLDL 521 (673)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 521 (673)
..|+......|..++.+.|++.+|...|++...--+.-|......+..+....+++..|...++++.+.++ .|+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~- 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH- 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch-
Confidence 45777777788889999999999999999988755667788888888888999999999999999888732 33333
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHccCChHHHHHHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~ 575 (673)
-.+.+.|...|++.+|...|+...+ ..|+.. .+...+.++|+..+|..-+-
T Consensus 164 -Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 -LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred -HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3467888889999999999998888 555533 35566778888877765544
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.035 Score=50.63 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSY---DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV 166 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (673)
+...+-.....+...|++++|...|+.+.... |-+.... -.+..++.+.++++.|...+++..+..+.-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444444555567788888888888887753 2222222 3455667788888888888888876533222223333
Q ss_pred HHHHHHh--cC---------------CH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005856 167 MLWGFFL--SL---------------KL---ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (673)
Q Consensus 167 l~~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (673)
.+.+.+. .+ +. ..|...|+.+++ -|-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-
Confidence 3333321 10 11 122233333332 222222234444433333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 292 (673)
-...--.+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|......+
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111123445566666666666666666543 11223344555556666666666666555443
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.11 Score=52.35 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=19.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
.|....|..+.......-.++-|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566777777666666566666666555443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00043 Score=48.67 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=46.9
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCC
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (673)
|...|++++|+++|+.+.... |.+..++..++.+|.+.|++++|..+++.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356788999999999998887 7788888899999999999999999999998864
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.00043 Score=64.23 Aligned_cols=265 Identities=16% Similarity=0.119 Sum_probs=150.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH----cC--CCCHHhHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK----KG--VLDPVAFN 418 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~ 418 (673)
.-+|+.|+....+.+|+.+++.+. ..+..-..+|+.+.++|.-.+++++|+++...=+. .+ .....+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 346777777777777777766541 12222334566667777777788888776542111 11 12223344
Q ss_pred HHHHHHHhcCChhHHHHHHHH----HHhCCCC-CCHHhHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 005856 419 NLIRGHSKEGNPDSAFEIVKI----MGRRGVP-RDADAYICLIESYLRKGE--------------------PADAKTALD 473 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 473 (673)
.|...+--.|.+++|...-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 455555556777776543322 2222111 122344445555554442 122333333
Q ss_pred HHHH----cCCC-CchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 474 SMIE----DGHS-PASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-ENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 474 ~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
+-++ .|-. .--..|..+...|.-.|+++.|+..-+.=+.. |-+ .....+..+..++.-.|+++.|.+.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 2211 1100 01123444445556678999998776543322 221 134567788999999999999999998
Q ss_pred HHHh----CCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcC----C-CCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 544 LMMQ----SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR----D-CIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 544 ~~~~----~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
.... .|.+.. ..++...|.-..+++.|+.++.+-+.. + ..-....+.+|+.++-..|..+.|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6554 222221 334666666677889999988765532 1 11134566689999999999999999887
Q ss_pred HHHH
Q 005856 611 KIME 614 (673)
Q Consensus 611 ~~~~ 614 (673)
+-+.
T Consensus 340 ~hl~ 343 (639)
T KOG1130|consen 340 LHLR 343 (639)
T ss_pred HHHH
Confidence 7654
No 184
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.0014 Score=49.94 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP 465 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (673)
+...+...|++++|...++...+..+.+...+..+..++...+++++|...++...... +.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555555554444444444445555555555555555555444432 11223444444444444555
Q ss_pred HHHHHHHHHHH
Q 005856 466 ADAKTALDSMI 476 (673)
Q Consensus 466 ~~A~~~~~~~~ 476 (673)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55554444443
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.54 E-value=0.088 Score=50.39 Aligned_cols=275 Identities=16% Similarity=0.183 Sum_probs=133.8
Q ss_pred HHHhcCChHHHHHHHhhcccCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH--H
Q 005856 65 ILGRVGKLNHARCILLDMPKKGVQWDEDMF------EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL--I 136 (673)
Q Consensus 65 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~ 136 (673)
.+.+.+++.+|..+|.++.+..- .++..+ +.++++|. .++.+.....+....+.- | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 34577888888888888766432 232222 34556664 345666666666555531 2 2334333333 2
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCC---C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcCHHH
Q 005856 137 LRRGRYMMAKRYFNKMLSE--GIEP---T---------RHTYNVMLWGFFLSLKLETAIRFFEDMKSR----GISLDVVT 198 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~--~~~~---~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 198 (673)
.+.+++.+|.+.+....+. +..| | -..=+..+.++...|++.+++.+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3667788888777766543 2221 1 111133445566777777777777666543 22356666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEK---NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPG 275 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 275 (673)
|+.++-.+++ ..|-++.+. .+-|+ |.-++-.|.+.= ..++.-.-..+.|.......++..
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHH
Confidence 6665555443 223233221 11111 222333332110 111110001223444444444443
Q ss_pred HHcC--CCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHh
Q 005856 276 LCDA--GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI----PTEAGHYGILIENFCK 349 (673)
Q Consensus 276 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 349 (673)
..-. ....--+++++.-....+.|+..-+...+...+.+ +.+++..+.+.+....+ ..-..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 12222334444444445566455555555555554 44555555544433211 1113456667777777
Q ss_pred cCCHHHHHHHHHHH
Q 005856 350 AEMYDRAIKLLDKL 363 (673)
Q Consensus 350 ~~~~~~a~~~~~~~ 363 (673)
.++...|-+.+.-+
T Consensus 311 ~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 311 QVQTEEAKQYLALL 324 (549)
T ss_pred HHhHHHHHHHHHHH
Confidence 78887777777665
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00046 Score=47.96 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..+...|++++|+..|+++++..|. +...+..++.++...|++++|+..++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667788888888888888887644 55666678888888888888888888887643
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0025 Score=59.62 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV---ISYTTMIKGYVAVERADDALR 252 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~ 252 (673)
+.+.|..+|+...+. +..+...|...++.+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333344444444433 2223344444444444444444444444444332 11111 244444444444444444444
Q ss_pred HHHHHHh
Q 005856 253 IFDEMKS 259 (673)
Q Consensus 253 ~~~~~~~ 259 (673)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0017 Score=60.83 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+|..++...-+.+..+.|..+|.++.+....+..+|......-.. .++.+.|..+|+...+. ++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344555555555556666666666654433344444444444222 34444466666655543 3345555555666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCch---hhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 461 RKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
..++.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666665542 22221 24555555445555555555555555554
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00045 Score=48.04 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+...|++++|...|+.+++..+. +...+..+..++...|++++|+..++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666665433 555555666666666666666666666554
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0061 Score=55.12 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG---RYMMAKRYFNKMLSEGIEPTRHTYNV 166 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (673)
|...|..|...|...|+++.|..-|.+..+.. ++++..+..+..++.... ...++..+|++++..+ +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44445555555555555555555555444432 233444444444333321 2334444555544432 223344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 167 MLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444555555555555555444
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.47 E-value=0.07 Score=47.38 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=102.9
Q ss_pred HHhcCChHHHHHHHHHHHHcC-C-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---cC
Q 005856 459 YLRKGEPADAKTALDSMIEDG-H-SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALL---MR 532 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~---~~ 532 (673)
-.+.|++++|.+.|+.+.... . +-...+...++-++.+.++++.|+..+++.+.. +-.||.. |-..+.++. ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 455677777777777776431 1 112344555566667777777777777777766 3333333 222222222 11
Q ss_pred ----CCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 533 ----GHV---EEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 533 ----g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
.+. .+|..-++++++ .-|+.. -..+|...+..+.+.- ...=..+++-|.+.|.+..|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~--ryPnS~----------Ya~dA~~~i~~~~d~L----A~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQ--RYPNSR----------YAPDAKARIVKLNDAL----AGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHH--HCCCCc----------chhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcChHHH
Confidence 122 333334444444 333321 1222222222221110 01113577889999999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhhhccc
Q 005856 606 YSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 606 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (673)
+.-++++++.-. .-...++..+..+|...|-.++|......|..+-++.
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 999999998632 2234556668899999999999999999998777554
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0055 Score=52.57 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
.|..+...+...|++++|...+++.......+ ...++..+...+...|++++|...++++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554332111 1124444555555555666666555555554
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0024 Score=54.82 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQW--DEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
.+..++..+...|++++|...|+........+ ...++..+...|...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444555555555555443322111 122444444444555555555555554443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00063 Score=47.99 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ 547 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 547 (673)
..|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555433 4445555555555555 45555555555544
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0034 Score=57.54 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=49.4
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHHHhcC
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAG 600 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g 600 (673)
...|++++|+..|+.+++ ..|+ ...++..+...|++++|...|++.++..|.. .+..+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 455677777777776666 2222 2235555566666666666666666554332 1344445566666666
Q ss_pred ChHHHHHHHHHHHHc
Q 005856 601 KTLNAYSILFKIMEK 615 (673)
Q Consensus 601 ~~~~A~~~~~~~~~~ 615 (673)
++++|.++|+++++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666654
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.40 E-value=0.13 Score=49.12 Aligned_cols=457 Identities=10% Similarity=0.091 Sum_probs=247.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 40 LQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
+++-+++. .+ |.+...|..+++-+...|..++.++++++|..- ++.-+.+|..-+++-...+++..+..+|.+...
T Consensus 29 lrLRerIk-dN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIK-DN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhh-cC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34555553 34 788899999999999999999999999999763 444567888888887888999999999999887
Q ss_pred cCCccCHhhHHHHHHHHHHcCC-----H-HHHHHHHHHHHh-CCCCCC-HHHHHHHHHH---HHhcCC------HHHHHH
Q 005856 120 LGVERSVKSYDALFKLILRRGR-----Y-MMAKRYFNKMLS-EGIEPT-RHTYNVMLWG---FFLSLK------LETAIR 182 (673)
Q Consensus 120 ~g~~~~~~~~~~l~~~~~~~g~-----~-~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~---~~~~~~------~~~a~~ 182 (673)
.. .+...|..-+....+... - ....+.|+-... .++.|- ...|+..+.. .-..|. ++....
T Consensus 105 k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 54 556677776665444321 1 111223333322 233332 2233333322 112233 334444
Q ss_pred HHHHHHhCCCCcCHHHHHHH------HHHH-Hc--CC----ChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHh
Q 005856 183 FFEDMKSRGISLDVVTYNTM------INGY-NR--FK----KMDEAEKLFAEMKE--KNIEP----TVISYTTMIKGYVA 243 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l------l~~~-~~--~~----~~~~a~~~~~~~~~--~~~~~----~~~~~~~ll~~~~~ 243 (673)
.+.++....+.-=...|+.. +.-. ++ .| -+..|...++++.. .|... +..+++-.-+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r---- 258 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR---- 258 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----
Confidence 45555443211001111110 0000 00 01 11223333333221 11100 0111111000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC------CCHH-HHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC
Q 005856 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDA------GKMV-EVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (673)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (673)
....-|...|..-... +-.. ..--++++.+.. .+-.+.+|......+...+
T Consensus 259 --------------------~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~is 316 (660)
T COG5107 259 --------------------TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGIS 316 (660)
T ss_pred --------------------cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhcc
Confidence 0000111122111111 1111 111223333221 1224556666666666777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc---c
Q 005856 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH---N 393 (673)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 393 (673)
|-+.|+....... +..+...-.+...|.-..+.+.....|+.+.+.-. .-| .++.+-+. .
T Consensus 317 d~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~------------r~y-s~~~s~~~s~~D 379 (660)
T COG5107 317 DKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK------------RKY-SMGESESASKVD 379 (660)
T ss_pred HHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH------------HHH-hhhhhhhhcccc
Confidence 7777777665443 33333333344555555666666666665532100 000 01111111 1
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
|+++.-.+++-+-. ..-..+|...+.+-.+..-++.|..+|-++.+.+ +.+++..+++++..++. |++.-|..+|
T Consensus 380 ~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~if 455 (660)
T COG5107 380 NNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIF 455 (660)
T ss_pred CCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHH
Confidence 22322222211111 1234567788888888888999999999999987 67788889999987764 7888899999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (673)
+--... ++.+..-....+.-+..-++-..|..+|+..+.+ +..+ ...|..++..-..-|+...+..+-+++.+ .
T Consensus 456 elGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~ 531 (660)
T COG5107 456 ELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--L 531 (660)
T ss_pred HHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--H
Confidence 987653 2233333455566677889999999999977665 1112 56788888888888999999988888887 5
Q ss_pred CCC
Q 005856 551 VPN 553 (673)
Q Consensus 551 ~p~ 553 (673)
.|.
T Consensus 532 ~pQ 534 (660)
T COG5107 532 VPQ 534 (660)
T ss_pred cCc
Confidence 555
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0048 Score=52.84 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 158 EPTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 4466677777776653 35666666777777777777777777777776654 2221 1111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
- .-.+.+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 123457789999999999999999999999999876654
No 198
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.37 E-value=0.00026 Score=40.34 Aligned_cols=27 Identities=37% Similarity=0.806 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSF 260 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (673)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.056 Score=47.96 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=86.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHH
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHS--PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN-L-DLVAKILEALL 530 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 530 (673)
....+...|++.+|...|+.+...... -.......++.++.+.|+++.|...+++.++.-+.-. . ..+..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455566666666666666643211 1122334455566666666666666666666532211 1 11111222211
Q ss_pred -----------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 531 -----------MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 531 -----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
..+...+|+..++.+++ .-|+ .....+|...+..+.+. -...-..++.-|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~--~yP~----------S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK--RYPN----------SEYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH--H-TT----------STTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH--HCcC----------chHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 11223455666665555 2233 33444444443322221 011223578889999
Q ss_pred CChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHH
Q 005856 600 GKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
|.+..|+.-++.+++.=.. .....+..++.+|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999986322 123455568888999999886543
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00071 Score=47.56 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=32.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..|++++|..+|+++.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666544 555555666666666666666666666665
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0039 Score=57.16 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=60.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLL 558 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~ 558 (673)
.|...+..+.+.|++++|...|+.+++..+... ...+..++.+|...|++++|+..|+.+.+. +..|. +..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777777644322 345556777777777777777777777652 22222 22345
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
.++...|++++|...+++.++..|.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5566677777777777777776543
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0078 Score=51.60 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCccCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 110 SVKIFDIMKQLGVERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184 (673)
Q Consensus 110 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (673)
-...|+.... -..+-.+|..+++.|.+. |..+=....+..|.+.|+..|..+|+.|+..+=+ |.+-
T Consensus 33 ~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------ 103 (228)
T PF06239_consen 33 HEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------ 103 (228)
T ss_pred hHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------
Confidence 3556666533 258889999999999854 7778788888999999999999999999988753 3321
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005856 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (673)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 246 (673)
|......... -| -.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 104 ---------p~n~fQ~~F~-hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ---------PRNFFQAEFM-HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------cccHHHHHhc-cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 11 13456688999999999999999999999999866553
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.015 Score=59.26 Aligned_cols=61 Identities=7% Similarity=0.093 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+..+.......|++++|...++++++.+ |+...|..+...+...|++++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444445677777777777776665 3556666666777777777777777766665
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.017 Score=45.48 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hhhHHHHHHH
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRD--ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMES 493 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 493 (673)
+..++-..|+.++|..+|+.....|.... ...+..+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455555666666666666666554432 2344455556666666666666666655431 22 1111222234
Q ss_pred HhccCCHHHHHHHHHHHH
Q 005856 494 LFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~ 511 (673)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 455566666665555443
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.00074 Score=47.63 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG-KTLNAYSILFKIME 614 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~A~~~~~~~~~ 614 (673)
++..+...|++++|+..|+++++.++. +...|..++.++.+.| ++.+|++.++++++
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 444555566666666666666665433 3445556666666666 56666666666654
No 206
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.29 E-value=0.00037 Score=39.72 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (673)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.015 Score=47.75 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQS-GSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
....+.-+...|++++|..+|+-+.-. ...|++ ..++..+...+.+++|+..+..+...++ .++..+.+.+.++...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 344566677899999999999876652 233443 3455556678899999999988887764 3555555799999999
Q ss_pred CChHHHHHHHHHHHHcC
Q 005856 600 GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~ 616 (673)
|+...|...|+.+.+++
T Consensus 119 ~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 119 RKAAKARQCFELVNERT 135 (165)
T ss_pred CCHHHHHHHHHHHHhCc
Confidence 99999999999888754
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.27 E-value=0.065 Score=47.52 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 96 VLIESYGKKGIVQESVKIFDIMKQLGV--ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
.....+...|++.+|...|+.+..... +......-.++.++.+.|+++.|...++++++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444566666666666666655421 111223444555666666666666666666554
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0097 Score=48.84 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=76.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
...-+...|++++|..+|+-....++. ++..+..|+.++...|++++|+..|..+..-. ..+++..-+.+.||...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344445799999999999987776654 34556788999999999999999999877643 3455666789999999999
Q ss_pred cchHHHHHHHHHhhhcccchhhhh
Q 005856 637 TKQADILSRMIRGEMSRGSQKEKK 660 (673)
Q Consensus 637 ~~~a~~~~~~~~~~~~~~~~~~~~ 660 (673)
.+.|..-.+...........++|.
T Consensus 121 ~~~A~~~f~~a~~~~~~~~l~~~A 144 (165)
T PRK15331 121 AAKARQCFELVNERTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 999977655555444333444433
No 210
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.18 E-value=0.31 Score=48.81 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=106.9
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
++..+|...+..-...|+.+...-+|++..-....-...|-..+......|+.+-|..++....+.-++-.+.+.-.-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34567888888888899999999998888765544556666666666677888888888877766544433333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCCHHHHH---HHHHHHHHcCCCCC--HHHHHHHHH-HHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGRVQTAS---RVMKSMVEKGVKEN--LDLVAKILE-ALL 530 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~--~~~~~~l~~-~~~ 530 (673)
..-..|+++.|..+++...+.- |+... ...-+....+.|+.+.+. .++.........+. ...+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3445689999999999988743 54332 222233455677777777 33333332211111 111111222 233
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
-.++.+.|..++.++.+ ..|+..
T Consensus 453 i~~d~~~a~~~l~~~~~--~~~~~k 475 (577)
T KOG1258|consen 453 IREDADLARIILLEAND--ILPDCK 475 (577)
T ss_pred HhcCHHHHHHHHHHhhh--cCCccH
Confidence 45678888888888877 666643
No 211
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.52 Score=49.07 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=103.0
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 005856 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHD--RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (673)
Q Consensus 22 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 99 (673)
+....+.+|.+..-++-|+.+.+.- + ..++ .......+.-+.+.|++++|...|-+-+.. +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4455566777777777777666543 1 1111 123444555666778888888777665543 121 24455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005856 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (673)
-|.......+...+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666666677777777777774 444555677788888888777766655543 2211 1112344555556666666
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
|..+-..... +......++. ..+++++|.+.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 6555444332 3333333333 3577777777776653
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0027 Score=45.31 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=45.4
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++.+.+++++|.+++++++..+|. ++..+...+.++.+.|++.+|.+.++++++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888887655 556666788888888888888888888887653
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.012 Score=52.69 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcC
Q 005856 528 ALLMRGHVEEALGRIDLMMQS----GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAG 600 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g 600 (673)
.+...|++.+|...|...++. ...|+ ..-++..+...|++++|..+|..+.+..|+.+ +..+..++.++.+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 345566677777766666652 12222 23355566666777777666666666544332 455566666666677
Q ss_pred ChHHHHHHHHHHHHc
Q 005856 601 KTLNAYSILFKIMEK 615 (673)
Q Consensus 601 ~~~~A~~~~~~~~~~ 615 (673)
+.++|+..|+++.+.
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777776666654
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.93 E-value=0.19 Score=48.20 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (673)
-..+.+++.+..-.|+++.|.+.++++.... +|.|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 3444567777777888888888888877553 5555
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.39 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=69.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHcc
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP-NFDSLLSVLSEK 564 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~~~~~ 564 (673)
+.+..+.-|...|+...|.++.++. .+ |+...|...+.+|+..++|++-.++.+. .-.| .+..++..|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHC
Confidence 4444455566677777666665544 33 4667777777778888887776655432 2233 366777777777
Q ss_pred CChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
|...+|..++.+ ++ +..-+..|.+.|++.+|.+.-.+
T Consensus 251 ~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888777775 11 13456777788888888776444
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.45 Score=45.28 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (673)
.+..+.-+...|+...|.++-.+. . -|+..-|..-+.+++..++|++-..+... +. ++..|..++.+|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHH
Confidence 344455556666666666665554 2 26666666777777777777666654332 11 22445666677777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHH
Q 005856 532 RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~ 573 (673)
.|+..+|..++.+ -|+ ..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k------~~~-~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK------IPD-EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh------CCh-HHHHHHHHHCCCHHHHHHH
Confidence 7777777766654 222 5556666677777777655
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.026 Score=50.51 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=37.7
Q ss_pred ccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCcc
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTK 638 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 638 (673)
..|++.+|...|...++..|... +..+..|+..++..|++++|..+|..+.+.-+ +..+..+..|+.+....|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34555555555555554443322 22333455555555555555555555544211 122334444555555555555
Q ss_pred hHHHHH
Q 005856 639 QADILS 644 (673)
Q Consensus 639 ~a~~~~ 644 (673)
+|...+
T Consensus 233 ~A~atl 238 (262)
T COG1729 233 EACATL 238 (262)
T ss_pred HHHHHH
Confidence 553333
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.81 E-value=0.0091 Score=42.55 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=26.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|.+.+++++|.++++.++..++. +...|...+.++...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455555555555555554333 344444445555555555555555555544
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.76 E-value=0.073 Score=51.76 Aligned_cols=78 Identities=13% Similarity=0.001 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHccCChHHHHHHHHH
Q 005856 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~ 576 (673)
.+|.+..++..+.+.. |......+..++...|+++.|...|++... +.|+... .+..+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444433 344444444444444445555555555544 4444222 22222335555555555555
Q ss_pred HhcCC
Q 005856 577 CLGRD 581 (673)
Q Consensus 577 ~~~~~ 581 (673)
+++.+
T Consensus 398 alrLs 402 (458)
T PRK11906 398 SLQLE 402 (458)
T ss_pred HhccC
Confidence 55543
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.75 E-value=0.51 Score=44.33 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=50.2
Q ss_pred HhcC-CHHHHHHHHHHHHHchhccCCCCCCCCch-----hhHHHHHHHHHccCCHh---HHHHHHHHHHHcCCCCHHhHH
Q 005856 348 CKAE-MYDRAIKLLDKLVEKEIILRPQSTLDMEA-----SSYNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 348 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~ 418 (673)
...+ +++.|..++++..+.-..........++. .++..++.+|...+..+ +|..+++.+....+..+.++.
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~ 125 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL 125 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 3445 78888887777755411000111112222 24455556665555433 344455555444444455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.-+..+.+.++.+++.+.+..|...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Confidence 5566666666666777777666654
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.72 E-value=0.24 Score=49.65 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
.+...+...+.+...+..|-++|.++-. ...+++.....++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444555555566677777777777643 34566777778888888877776655
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.15 Score=42.41 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=42.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAY 452 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 452 (673)
...++..+...|+++.|....+.+....|.+...+..++.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344555566677777777777777777777777777777777777777777777766542 3666665543
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.66 E-value=0.52 Score=43.24 Aligned_cols=220 Identities=19% Similarity=0.115 Sum_probs=142.8
Q ss_pred CCHhHHHHHHHHHHHcCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKT 470 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 470 (673)
+....+...+......... ...........+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555555554432 3566777777788888888888887777642 233455666677777777788888888
Q ss_pred HHHHHHHcCCCCchhhHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 471 ALDSMIEDGHSPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...+++++|+..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877643322 122222222 67788888888888888865332 12233334444446677888888888888777
Q ss_pred CCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 548 SGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 548 ~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
..|. ...+...+...++++.|...+..+....+. ....+..+...+...|.++++...+.+......
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 --LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred --hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3333 445666677778888888888888876543 234444566666677778888888888777653
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.63 E-value=0.029 Score=54.33 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhc
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (673)
...++.+..+|...|++++|+..+++.++ +.|+ +..+..+|...|++++|+..++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555444 3333 23344444445555555555554444
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.59 E-value=0.0073 Score=43.76 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=21.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...+..++.++...|++++|++.++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566778888888888888888887664
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.29 Score=44.43 Aligned_cols=121 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
-+...+++.+|...|+.+.... +.+..+...++.+|...|+.+.|..++..++.............-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4445667777777777776665 45566666677777777777777777777665422211111112233333333333
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (673)
+...+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333321 1244444455555555566666655544443
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.55 E-value=0.6 Score=44.89 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=51.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSK---EGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 454 (673)
+...++-+|....+++.-.++.+.+.... ...+.+-...+-++.+ .|+.++|..++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 44455566777888888888888877663 2233333445555666 7788888888877555555667777776
Q ss_pred HHHHHH
Q 005856 455 LIESYL 460 (673)
Q Consensus 455 l~~~~~ 460 (673)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666543
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.55 E-value=0.056 Score=41.87 Aligned_cols=94 Identities=20% Similarity=0.087 Sum_probs=56.4
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK---LIAGLNQEG 635 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g 635 (673)
.++++.|+++.|++.|.+++..-|+ ....|+.-+.++--.|+.++|+.-++++++-.+...-..+.. -+..|+..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455677777777777777766443 455677777777777777777777777776544333222222 333467777
Q ss_pred CcchHHHHHHHHHhhhcc
Q 005856 636 NTKQADILSRMIRGEMSR 653 (673)
Q Consensus 636 ~~~~a~~~~~~~~~~~~~ 653 (673)
+-+.|..=.+..-..++.
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777774433344444433
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.51 E-value=0.39 Score=44.73 Aligned_cols=259 Identities=12% Similarity=0.054 Sum_probs=136.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHH----HHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQ----LMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADA 451 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~ 451 (673)
++-.+..+.++.|.+++++..--. ..+.. ..-...|..+.+++.+..++.+++.+-+.-... |..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 445556666666666665433221 11111 112234556666666666666666665544432 22221 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----chhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSP-----ASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKENLDLV 522 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 522 (673)
..++..++.-.+.++++++.|+...+-.... .-.++..+...|....|+++|.-+..++.+. +++.-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566666677788888887766432111 2345667777788888888887776666543 333111112
Q ss_pred -----HHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCH----HHHHHHHHccCChHHHHHHHHHHhcCC--CCC---
Q 005856 523 -----AKILEALLMRGHVEEALGRIDLMMQ----SGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRD--CII--- 584 (673)
Q Consensus 523 -----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~--- 584 (673)
..+.-++...|..-+|.+.-++..+ +|..|-+ -.+.++|...|+.+.|..-++.+.... ...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 2344556667777666666655443 5666653 347778888888888888888776531 111
Q ss_pred ChHhHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchH
Q 005856 585 DLASYEKVLDALLAAGKT-----LNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 585 ~~~~~~~l~~~l~~~g~~-----~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
.......++..+....-. =.|+++-+++++-.. .......-.+...|+..|.-++-
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~ 350 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDEL 350 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHH
Confidence 122233333333322222 236666666655221 11223333355557677665543
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.56 Score=41.66 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY 383 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (673)
+.+.++......|.+.-....++++++...+.++...+.+++.-.+.|+.+.|...|++..+... .-.+..-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhccchhHHHH
Confidence 34444555555555555556666665555455555556666666666666666666665532211 001111111122
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
......|.-.+++..|...+.++...++.++...|.-.-+..-.|+..+|.+.++.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222334555677888888888888887778877777766777778899999999988875
No 231
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.38 Score=39.68 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=88.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH------HHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD------SLL 558 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~ 558 (673)
.|...+. +...+..++|+.-|..+.+.|...- .-..........+.|+...|+..|+++-.-...|... ...
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 4566777888888888887755421 1122334555678888899999988887755555422 134
Q ss_pred HHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
..+...|.+++....++.....+...-...-..|+-+-++.|++.+|.+.|.++......|.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 45668999999988888444332211233336788888899999999999999988655444
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.43 E-value=0.23 Score=48.42 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
..+|.++.++.++ ..|+ ...++.++...++++.|...|+++...+|+ ....|...++.+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555555 3333 122334444555566666666666666543 23334455666666666666666666
Q ss_pred HHHHc
Q 005856 611 KIMEK 615 (673)
Q Consensus 611 ~~~~~ 615 (673)
+++.-
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 65554
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.2 Score=45.94 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=51.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH----HHHHHHHhccCCHHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF----RSVMESLFEDGRVQT 502 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 502 (673)
.|++.+|...++++.+. .+.|...+..--.+|...|+...-...+++.+.. ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555543 3334555555555555555555555555554421 12222211 122223344555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
|.+.-++..+.+.. |.-.-.+....+-..|+..++.++.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHH
Confidence 55555555444322 2333334444444455555555543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.084 Score=50.00 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
+..+.-.+.+.+++.+|+..-.+++..++. +......-+.+|...|+++.|+..|+++++..+.. -.+-+.|+.+-.+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k 337 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQK 337 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 344566666788888888888888888755 44444478888888889999999888888764322 2233345555555
Q ss_pred cCCcchH-HHHHHHHHhhh
Q 005856 634 EGNTKQA-DILSRMIRGEM 651 (673)
Q Consensus 634 ~g~~~~a-~~~~~~~~~~~ 651 (673)
.....+. ..++..|...-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5555555 44555555444
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.011 Score=42.90 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=28.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
+++.+...|...|++++|+..|++.++. |.. |. ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 111 11 2334455555555555555555555443
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.32 E-value=0.11 Score=41.85 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (673)
+....+.|++++|++.|+.+...- ..|- ...++.++.+.|++++|...+++.++.+|...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 333445555555555555555421 1111 12245555555555555555555555554444
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.33 Score=42.53 Aligned_cols=203 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. .--...+......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666666777776666555431 111211111 112234444444444431 1112334444556666
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 497 DGRVQTASRVMKSMVEK--GVKENL--DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
+|..+.|-..+++.-+. +.+|+. ..|..-+......++...|.+++.+ ....|.+..++.+|-.
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk------------~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK------------CSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH------------hhhHhhhhHHhhHHHH
Confidence 66666666666655433 222221 1122222222222222223322222 3334555566666655
Q ss_pred HHHHHhcCC--CCCC---hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 573 LLDFCLGRD--CIID---LASYEKVLDALLAAGKTLNAYSILFKIMEKGG---VTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 573 ~~~~~~~~~--~~~~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
.+.+-.... +... ...|...+-.++-..+|..|...++..-+.+. +.+..+...|+.+|. .|+.+++..
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 544322211 1111 22344555566667788888888887555443 344556666666653 456665543
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.28 E-value=0.26 Score=50.02 Aligned_cols=24 Identities=13% Similarity=-0.109 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 005856 454 CLIESYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~ 477 (673)
.++....-.||-+.+++.+.+..+
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhc
Confidence 344444455555555555555443
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.17 Score=47.00 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=141.0
Q ss_pred ccCCHhHHHHHHHHHHHcC---CCCHHhHHHHHHHHHhcCChhHHHHHH----HHHHhCC-CCCCHHhHHHHHHHHHhcC
Q 005856 392 HNGQTGKAEIFFRQLMKKG---VLDPVAFNNLIRGHSKEGNPDSAFEIV----KIMGRRG-VPRDADAYICLIESYLRKG 463 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~~ 463 (673)
...+.++|+..+.+....- .....++..+..+.+..|.+++++..- +.+.+.. -..-...|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776655543 233456777888888888888776532 2222210 0011235555666666666
Q ss_pred ChHHHHHHHHHHHHc-CCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCC
Q 005856 464 EPADAKTALDSMIED-GHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~ 534 (673)
++.+++.+-+.-... |..| ......++..++...+.++++++.|+.+.+. +.......+-.+...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655554432 2222 1123445666777788899999999988765 222334567788888999999
Q ss_pred HHHHHHHHHHHHh----CCCCCCH---------HHHHHHHHccCChHHHHHHHHHHhcCCCCC-C----hHhHHHHHHHH
Q 005856 535 VEEALGRIDLMMQ----SGSVPNF---------DSLLSVLSEKGKTIAAVKLLDFCLGRDCII-D----LASYEKVLDAL 596 (673)
Q Consensus 535 ~~~A~~~~~~~~~----~~~~p~~---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~l 596 (673)
+++|+-+..+..+ .++ .++ ..+.-++...|++.+|.+.-+++.+..... + ....-.++++|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 9999887765554 222 122 225556667899888888877766543221 2 33345788999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 005856 597 LAAGKTLNAYSILFKIME 614 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~ 614 (673)
-..|+.+.|+.-|+++..
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 999999999999998765
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.37 Score=40.83 Aligned_cols=90 Identities=22% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 005856 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (673)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 599 (673)
+...+...|++++|..-++..+......++ ..+.......|.+++|+..++.....+. .+..-...+++|...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 345566677777777777666543333222 1245555667777777777763333221 233345567778888
Q ss_pred CChHHHHHHHHHHHHcC
Q 005856 600 GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 600 g~~~~A~~~~~~~~~~~ 616 (673)
|+.++|+.-|++.++..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888877775
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.057 Score=45.01 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005856 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (673)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (673)
.++..+...|+++.|..+.+.+.... |.+...|..+|.+|...|+...|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444555555555555555443 334445555555555555555555555544
No 242
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.1 Score=44.95 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
....-+..+.+...++-|..+.+.-... ..--..++......+.+.|++++|...|-+-... +.| ..++.-|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 4556677777777888888776543221 0111233344444556778888888777665431 111 23455555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (673)
...+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.++|..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666666667777888777754 44455678888888888887776665544 2211 1123345556666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
+-..... +...... .+-..+++++|++.+..+.
T Consensus 485 LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 5544432 2222233 3345688899988887763
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.25 Score=41.74 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF--RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDL--VAKIL 526 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 526 (673)
.|..++.... .+.+ +.....+.+...+......++ ..+...+..+|++++|...++..+....+.+... --.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444432 3333 445555566543211222222 2334567889999999999998876532222222 23577
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.....|.+|+|+..++.....+..+-. ..-++++...|+.++|..-|++++..+.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888999999999999988776555543 34678899999999999999999998643
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.13 E-value=2.8 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 625 DKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
.+|+.++...|..++|..+.+....
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3588999999999999777665554
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.12 E-value=1.4 Score=42.51 Aligned_cols=436 Identities=12% Similarity=0.125 Sum_probs=219.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 005856 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN 226 (673)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 226 (673)
++-+++.+. +.|..+|..|+.-+...+..++..++++++..- ++--..+|...+.+-...+++...+.+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 554555442 457788889999998889999999999888754 33345677777777777788889999998888764
Q ss_pred CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHh-CCCCCCHH-H---HHHHHHHHHcCCCH------HHHHHHH
Q 005856 227 IEPTVISYTTMIKGYVAVERA------DDALRIFDEMKS-FDVKPNAV-T---YTALLPGLCDAGKM------VEVQKVL 289 (673)
Q Consensus 227 ~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~~-~---~~~ll~~~~~~~~~------~~a~~~~ 289 (673)
. +...|...+..-.+.+.. ....+.|+-... .++.|-.. . |..++...-..|.+ +.....+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 456666666544443311 111223332222 33333322 2 33333333333333 3344455
Q ss_pred HHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc
Q 005856 290 REMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEII 369 (673)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (673)
.+++.. | .|++++...-|+.... ..+..|-..++. -..--+-.|...++++.....-
T Consensus 185 ~ral~t---P---------------~~nleklW~dy~~fE~---e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 185 MRALQT---P---------------MGNLEKLWKDYENFEL---ELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HHHHcC---c---------------cccHHHHHHHHHHHHH---HHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhcc
Confidence 555442 1 1122222221111111 000000000000 0000112233333332211000
Q ss_pred cCCCC---------CCCCchhhHHHHHHHHHccC-------CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHH
Q 005856 370 LRPQS---------TLDMEASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 370 ~~~~~---------~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
.+... .......-|...|.--...| ......-++++....-+..+.+|---...+...++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 00000 00000111222222211111 112233344444444455556666666666667777777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------CCC---------------Cch
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--------------GHS---------------PAS 484 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~---------------~~~ 484 (673)
....+..... .|+... .+...|.-..+-+.....|+..... +.. .-.
T Consensus 322 l~tv~rg~~~--spsL~~--~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t 397 (660)
T COG5107 322 LKTVERGIEM--SPSLTM--FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLT 397 (660)
T ss_pred HHHHHhcccC--CCchhe--eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhh
Confidence 7766554432 233111 1222222233333333322222110 110 011
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhCCCCCCH-HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDL-MMQSGSVPNF-DSLLSVL 561 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p~~-~~~~~~~ 561 (673)
..|...+....+..-.+.|..+|-+..+.+ ..+++..+++.+.. ...|++.-|..+|+- |...+..|-+ ...+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 234455555566677888899999988887 45566666777664 456778888888884 4444444443 3466667
Q ss_pred HccCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
..-++-+.|..+|+.++..--. --...|..+++-=..-|+...|..+=+++.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7788888899999877654211 11467778888777888888888777777664
No 246
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.94 Score=40.31 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH-----
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV----- 490 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----- 490 (673)
+.++++..+.-.|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555556666666666666666555556666666666666667666666666655543322333322222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
...+.-++++..|...+.++...+.. ++...+.-+-++.-.|+..+|++.++.|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22344556677777777777666544 444444444444555667777777777766
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=0.36 Score=49.03 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 399 AEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
..-+|.-+...-| ..+..++....-.||-+.+++.+....+.
T Consensus 176 G~G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 176 GFGLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 3445555555533 45677788888889999999998887663
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.05 E-value=0.57 Score=38.60 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 005856 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (673)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (673)
+..++..+...+...+.+..+..+++++...+ +.++...+.++..|++.
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 44455556666666666666666666666554 34555556666666544
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.02 E-value=2 Score=43.33 Aligned_cols=129 Identities=8% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 241 (673)
.|..++.---...+.+.+..++..+... .|.. .-|......-.+.|..+.+.++|++.... ++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3333443332333334444455554433 2222 23344444444555566666666655542 344444444443332
Q ss_pred H-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 242 V-AVERADDALRIFDEMKSF-DVK-PNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 242 ~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
. ..|+.+...+.|+..... |.. .+...|...+..-...+++.....++++.++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 334455555555554431 111 1223344444444445555555555555544
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.4 Score=43.94 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE 563 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~ 563 (673)
..+.+-.+.-+...|+..+|.++-++. --|+...|..-+.++...++|++-.++.+.... +-.+.-+..+|.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLK 756 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHh
Confidence 344455555667778878877766654 224666676667778888888776666543321 1225667778888
Q ss_pred cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
.|+.+||.+++-+.-. +...+.+|.+.|++.+|.+.-
T Consensus 757 ~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 8888888887763321 114677788888888887653
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.98 E-value=0.14 Score=40.74 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHchhc-------cCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEII-------LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
.++..++.++++.|+.+....+++..-..+.. ..+.....|+..++.+++.+|+..+++..|.++.+.+.+.-
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44555666666666666666665544322110 12445556666666777777766677777776666666554
Q ss_pred --CCCHHhHHHHHHHHH
Q 005856 411 --VLDPVAFNNLIRGHS 425 (673)
Q Consensus 411 --~~~~~~~~~l~~~~~ 425 (673)
+.+..+|..|+.-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 334555666555443
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.93 E-value=0.12 Score=41.18 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.2
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 005856 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILE 527 (673)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 527 (673)
...|+..++.+++.+|+..|++..|+++.+...+. +++.+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45677777788888888888888888888877766 66666777776664
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.82 Score=40.21 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
.+......|..+|..+.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444444555555555544444443
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1.3 Score=40.40 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=29.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 171 FFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
....|++.+|...|......... +...-..+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34556666666666665554322 344444555566666666666666655543
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.53 Score=38.88 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh-hHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-SYD 130 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~ 130 (673)
..+...|...++. .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... ...
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3455666666654 45566778888888877776542222 22233345567788888888888876643233322 111
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 131 AL--FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 131 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
.| .-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|.++....
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12 22345677888887777777555444444445566666667888888888888877643
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.85 E-value=0.66 Score=36.39 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=77.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
.-.|..++..+++.+.... .+..-++.++......-+-+-..++++.+-+- ++.+ -.....++.+|...|...+-
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcchHHH
Confidence 3457777888888777653 45556666666555555555555555554332 2211 12234566666666654443
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
+.+ .++.+...|+.+.-.+++....+ +-++++.....++.+|.+.|+..+|-+++.++-++|.
T Consensus 89 vD~---------------ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDL---------------ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHH---------------HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHH---------------HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 322 34556677777777777765554 3356777777888889999999999888888888763
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.44 Score=43.88 Aligned_cols=119 Identities=13% Similarity=-0.017 Sum_probs=54.9
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccC-CCCCCHHHHHHH--HHHHHhcC
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEVL--IESYGKKG 105 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l--i~~~~~~~ 105 (673)
++...|+...|-..++++++.. |.+.-++...=.+|..+|+...-...++++... +......+|..- .-++..+|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 4444555555555555555443 455555555555555555555555555554432 211111222221 12233445
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (673)
-+++|.+.-++..+.+ +.|..+-.++...+--.|++.++.++..
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555555555555433 2333344444444445555555555443
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.81 E-value=1.3 Score=39.61 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=96.3
Q ss_pred HHHccCCHhHHHHHHHHHHHcCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK--- 462 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 462 (673)
.-.+.|++++|...|+.+....| ....+...++.++-+.++++.|....++...........-|...+.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567889999999998887764 344556667777888888999988888887753222223344444444421
Q ss_pred ----CChH---HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 463 ----GEPA---DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 463 ----~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
.+.. .|..-|++++.. + ||.. =...|..-...+... =...=..+.+.|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 2222 233333333332 1 2211 111222211111111 000112466777788888
Q ss_pred HHHHHHHHHHHhCC-C----CCCHHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSG-S----VPNFDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 536 ~~A~~~~~~~~~~~-~----~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
-.|..-+++|++.- . .+....+..+|...|-.++|...-+ .+..+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhc
Confidence 88888888877731 1 1113446667777888888877655 55554
No 259
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.75 E-value=0.11 Score=50.61 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=70.0
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005856 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLS 559 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 559 (673)
.+...++.+..+|...|++++|+..|++.++.++.... ..|..+..+|...|+.++|++.+++.++.. .|.+..+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f~~i~~ 151 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKFSTILN 151 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhHHHHHh
Confidence 34668889999999999999999999999998665322 358889999999999999999999999842 333321111
Q ss_pred --HHHccCChHHHHHHHHHHhcCC
Q 005856 560 --VLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 560 --~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.+....+..+..++++....-+
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhC
Confidence 0111233345556666555544
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.71 E-value=0.011 Score=34.24 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 574 LDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
++++++.+|. +...|..++..|...|++++|++
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhcC
Confidence 5677777654 67778889999999999998863
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.37 Score=45.85 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC---------CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHH
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD---------MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPV 415 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (673)
..|.+.|++..|...|++++..-. ...... .-..++..+..++.+.+++..|+......+...++|..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~---~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLE---YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhh---ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 356666777777766666543210 000000 01113344455555555666666666665555555555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
....-..++...|+++.|+..|+.+.+.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5555555555566666666666555553
No 262
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.17 Score=42.65 Aligned_cols=88 Identities=19% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 526 LEALLMRGHVEEALGRIDLMMQSGSVPNF---------DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..-+...|++++|..-|...++ .-|.. ..-+-++.+.++++.|+.--.+++..+|. ........+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 4445677777777777777776 33331 11222334567777777777777777643 233333456677
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 005856 597 LAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~~ 616 (673)
-+..++++|++=|+++++..
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 77777777777777777664
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.45 E-value=0.96 Score=35.53 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=38.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.....++.....|.-+.-.+++..+.+.+.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455566667777777777776665566777777777777777777777777777776664
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.24 Score=41.84 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHc
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKEN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSE 563 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~ 563 (673)
.-+...|++++|..-|..+++.-+... ...|..-+.++.+.+.++.|+.-..+.++ +.|.+.. -..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 346777888888888888777633222 22344445566677778888777777776 6676432 2345666
Q ss_pred cCChHHHHHHHHHHhcCCCC
Q 005856 564 KGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~ 583 (673)
..++++|+.-|++.+..+|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 77788888888877776543
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.32 E-value=0.28 Score=38.22 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=50.4
Q ss_pred HHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhh---HHHHHHHHHHcC
Q 005856 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS---YDALFKLILRRG 140 (673)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~g 140 (673)
-++...|+.+.|++.|.+.+..-+ .+.+.|+.-..++.-+|+.++|+.-+++..+..-+.+... |..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345566666666666666554422 2566666666666666666666666666655422222222 222233455556
Q ss_pred CHHHHHHHHHHHHhCC
Q 005856 141 RYMMAKRYFNKMLSEG 156 (673)
Q Consensus 141 ~~~~A~~~~~~~~~~~ 156 (673)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.23 E-value=0.68 Score=45.45 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=76.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC---------H--
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN---------F-- 554 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~---------~-- 554 (673)
.++.-.-+..+.+.-++.-+++++..+. -...|..+. --......+|.+++++.++.+ ...+ +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pd-CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPD-CADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhh-hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3444455667777777777777776322 123333222 223456788888888776521 1110 0
Q ss_pred -------------HHHHHHHHccCChHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 555 -------------DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 555 -------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..+...+.+.|+.+||++.++.+++..+..+ ..+...|+..|...+.+.++..++.+.-+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1134444578888999888888887654433 33456788888888999998888888643
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=4.9 Score=41.82 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (673)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-.++-+.+ -++.-|.-+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence 44445555666777777777766665 257777777777788878777665554443 22456667777888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
+.|+.++|.+++.+.... . ....+|.+.|++.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 888888888887776322 1 3566777778887777654
No 268
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=2.1 Score=37.55 Aligned_cols=54 Identities=19% Similarity=0.084 Sum_probs=29.4
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhH------HHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASY------EKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..+++.+|+.+|++.......++.--| ...+-++...++.-.+...+++..+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3567777777777766665444332212 12222233346666666666766654
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.08 E-value=1.6 Score=42.98 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 131 ALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIRFFEDMKS 189 (673)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (673)
.+...+-+.|+.++|++.|++|.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666554211 1233455566666666666666666666543
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.03 E-value=1.2 Score=36.04 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 99 ESYGKKGIVQESVKIFDIMKQLG--VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (673)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (673)
....+.|++++|.+.|+.+..+- -+-...+.-.++.+|.+.++++.|...+++.++..+.....-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 33446667777777776666542 012233455566667777777777777777666533322233444444443
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.81 E-value=0.66 Score=46.44 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...|..|.+.....|+.+.|++.|++... +..|+-.|...|+.+.-.++.+.....| -++....+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~ 411 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQA 411 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHH
Confidence 334555555555555555555555555432 4444555555555555555544444432 12333333
Q ss_pred HHhcCChHHHHHHHH
Q 005856 459 YLRKGEPADAKTALD 473 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~ 473 (673)
+.-.|+.++..+++.
T Consensus 412 ~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 412 ALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHT-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444455554444443
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.70 E-value=0.3 Score=43.72 Aligned_cols=105 Identities=15% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 005856 158 EPTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (673)
Q Consensus 158 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (673)
+.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..-.. ..+|+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH-----------
Confidence 3455556555555542 2455666666666666677667777776666554322111 011111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
..-.| -.+-+-++.++++|...|+.||..+-..++.++.+.+-
T Consensus 131 ----~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ----VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111 12335678899999999999999999999988877664
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.63 E-value=1.6 Score=43.77 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=24.9
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
+...|..|.....+.|+++.|...|.+..+ +..|+-.|.-.|+.+...++.+.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555555555555555544432 344444444455544444444443
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.54 E-value=0.11 Score=32.22 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=10.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+...|.+.|++++|.++++++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.45 E-value=3 Score=36.15 Aligned_cols=85 Identities=21% Similarity=0.083 Sum_probs=55.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
.|-...|.-=|.+.....|.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-+ ++.-.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3445555566666666677778888888888888888888888888888764333322333222 233457777777766
Q ss_pred HHHHHc
Q 005856 473 DSMIED 478 (673)
Q Consensus 473 ~~~~~~ 478 (673)
...-..
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 666543
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.43 E-value=0.11 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=23.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (673)
++..+...|...|++++|.++|+++.+..|.++..+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3445555666666666666666666666655555554443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.28 E-value=0.11 Score=30.59 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
|..|+.+|.+.|++++|++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999998553
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.28 E-value=4.8 Score=37.83 Aligned_cols=220 Identities=14% Similarity=0.051 Sum_probs=122.9
Q ss_pred HccCCHhHHHHHHHHHHHcC-CCCHHhHHHH-------HHHHHhcC-ChhHHHHHHHHHHhC--------CCCCCH----
Q 005856 391 CHNGQTGKAEIFFRQLMKKG-VLDPVAFNNL-------IRGHSKEG-NPDSAFEIVKIMGRR--------GVPRDA---- 449 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l-------~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~---- 449 (673)
.+.|+.+.|..++.++.... ..++.....+ +......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999999887755 3344333333 33334456 888888877765432 122332
Q ss_pred -HhHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 450 -DAYICLIESYLRKGEPA---DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 450 -~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
.+...++.+|...+..+ +|.++++.+.+.. .-...++..-+..+.+.++.+++.+.+.+|+..-.- ....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHH
Confidence 45677888888877765 4666666665432 222444445566777789999999999999887221 22333333
Q ss_pred HHHH---HcCCCHHHHHHHHHHHHhCCCCCCHH-H-------HHHHHHccC------ChHHHHHHHHHHhcC-CCCCChH
Q 005856 526 LEAL---LMRGHVEEALGRIDLMMQSGSVPNFD-S-------LLSVLSEKG------KTIAAVKLLDFCLGR-DCIIDLA 587 (673)
Q Consensus 526 ~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~-------~~~~~~~~g------~~~~A~~~~~~~~~~-~~~~~~~ 587 (673)
+..+ ... ....|...+..++.....|..+ . ........+ +.+....+++..... +.+.+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 333 3456666666666544554432 1 111111221 244444445432221 1122221
Q ss_pred h-------HHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 588 S-------YEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 588 ~-------~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
. .-.-+...++.++|++|.++|+-.+
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1 1123455677899999999988654
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.99 E-value=0.7 Score=42.42 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 005856 127 KSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNT 201 (673)
Q Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 201 (673)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555556666666666666666665542 23555566666666666666666666655543 355565555555
Q ss_pred HHHH
Q 005856 202 MING 205 (673)
Q Consensus 202 ll~~ 205 (673)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.99 E-value=12 Score=41.40 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=9.1
Q ss_pred HHHhccCCHHHHHHHHHHH
Q 005856 492 ESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~ 510 (673)
.+|..+|+|.+|+.+..++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHhccHHHHHHHHHhh
Confidence 3444455555555444443
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.95 E-value=10 Score=40.41 Aligned_cols=138 Identities=10% Similarity=0.055 Sum_probs=64.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH
Q 005856 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA 321 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 321 (673)
.+.|++..+.++...+...-+ .....|..+.... .....++....+++- .-.|.....-......+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCHHHH
Confidence 466777777666666543211 1112222222211 122344444444332 11232334444444455556666655
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhH
Q 005856 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGK 398 (673)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (673)
...+. . .+.+....-....+....|+.++|....+.+-..+ ...+..++.++..+.+.|....
T Consensus 119 ~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g---------~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 119 LAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG---------KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCChHHHHHHHHHHHcCCCCH
Confidence 55221 1 13444444555666677777766666655553221 1223456666666665554433
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.93 E-value=3.9 Score=35.49 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVML 168 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 168 (673)
-+.+|+.+.--+...|+++.|.+.|+...+.+...+-...|.-|..| --|++.-|.+-|.+.-+.+.. |-...|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46678888888888899999999999888865333333334333333 458888888777777554321 2222232222
Q ss_pred HHHHhcCCHHHHHHHHH-HHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC------CCCHHHHHHHHHHH
Q 005856 169 WGFFLSLKLETAIRFFE-DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNI------EPTVISYTTMIKGY 241 (673)
Q Consensus 169 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~ 241 (673)
-..-++.+|..-+. +.... |..-|...+-.|.- |.+. ...+++++....- ..-+.+|--+.+.+
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 23456666665443 33333 55555544433321 1111 1122222221100 01245788888889
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 005856 242 VAVERADDALRIFDEMKSFD 261 (673)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~ 261 (673)
...|+.++|..+|+......
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 99999999999998887654
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.81 E-value=7.3 Score=38.25 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=40.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVE 512 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (673)
...+|..++..+.+.|+++.|...+..+...+... .......-+..+...|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777777777777777776533111 223333344556667777777777777666
No 284
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.79 E-value=0.72 Score=41.45 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred ccCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHH
Q 005856 123 ERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVV 197 (673)
Q Consensus 123 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 197 (673)
..|-.+|...+..+... +..+-....++.|.+.|+..|..+|+.|+..+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 46777788777777543 556666777888999999999999999988764321 122221
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
.-...+ .|-+ +-+=+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~-HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 2222 2234688999999999999999999999999777643
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.45 E-value=4.1 Score=34.23 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHcCCccCHhhHHHHHHHHHHcCCHHH
Q 005856 115 DIMKQLGVERSVKSYDALFKLILRRGRYMM 144 (673)
Q Consensus 115 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 144 (673)
..+.+.+++++...+..+++.+.+.|++..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344445555555555555665555555433
No 286
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.44 E-value=8.4 Score=37.79 Aligned_cols=113 Identities=15% Similarity=0.059 Sum_probs=77.9
Q ss_pred cchHHHHHHhccCCCCChHHHHH-HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc
Q 005856 6 WTTRLQNKIRALVPQFDHNLVYN-VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK 84 (673)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (673)
....+...+|..+..++...+.. +....|+++++.+....+...- .....+...+++-....|+++.|..+-+.|+.
T Consensus 308 as~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 308 ASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 34556667777777777766665 4456788888888877665442 45566777777777888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005856 85 KGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (673)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g 121 (673)
..+. ++.+........-..|-++++.-.|.++...+
T Consensus 386 ~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 386 NEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred cccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 6665 55555544444455677788888888877654
No 287
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.34 E-value=3.9 Score=33.60 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (673)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+.++.++. ....-+...++..|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 344444445555555555555555543 34445555555555432 2333333331 112223444555555555555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhc-CChHHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDALLAA-GKTLNAYSILFK 611 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~A~~~~~~ 611 (673)
++.-++.+. ..+...+..+... ++++.|++++.+
T Consensus 87 ~~~~l~~k~---------~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 87 EAVELYKKD---------GNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHhh---------cCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555532 1122233333333 556666665554
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.30 E-value=6.2 Score=35.80 Aligned_cols=200 Identities=17% Similarity=0.083 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHH--cCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH-
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMK--KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE- 457 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 457 (673)
..+......+...+....+...+..... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3455556666667777777777776665 335555666777777777777888888887777643332 122222233
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67788888888888888755221 0122333333444566788888888888888764332356667777888888888
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 536 EEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
+.|...+..... ..|+ .......+...+.++++...+++.....+.
T Consensus 219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888877 4443 233444445667788888888888876543
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.10 E-value=1.1 Score=38.39 Aligned_cols=95 Identities=15% Similarity=0.003 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCC---CChHhHHH--
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI---IDLASYEK-- 591 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~-- 591 (673)
+..++..|.+.|+.++|++.|.++.+....|. +..++......+++..+..++.++....-. ++...--.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44455555555555555555555554333333 122333334455555555555444433111 11111011
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
-+-.+...|++.+|.+.|-.....-
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccCcCC
Confidence 2233445788888888877766543
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.97 E-value=0.13 Score=29.67 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHAR 76 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 76 (673)
|+++++.+ |.++.+|..+..++...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666 778888888888888888888775
No 291
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.94 E-value=10 Score=37.29 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------c----cCChHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHh
Q 005856 532 RGHVEEALGRIDLMMQSGSVPNFDSLLSVLS-------E----KGKTIAAVKLLDFCLGRDCIIDLASY--EKVLDALLA 598 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~-------~----~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~l~~ 598 (673)
.|+.++|+.++-.+.. +.|+...+..-|- + -|..-...+.++.+.+.-.-.+...| ...+-.-..
T Consensus 711 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (831)
T PRK15180 711 EGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH 788 (831)
T ss_pred cccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH
Confidence 4788999988776665 8888554443332 1 23332233333333332111111122 111122234
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 005856 599 AGKTLNAYSILFKIMEKGGVTDWKS--SDKLIAGLNQ 633 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 633 (673)
..+|.+|.++++++-+.+++..+++ ...++.++.+
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 5688999999999888776655443 2335555443
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.91 E-value=14 Score=38.83 Aligned_cols=13 Identities=15% Similarity=-0.212 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 005856 602 TLNAYSILFKIME 614 (673)
Q Consensus 602 ~~~A~~~~~~~~~ 614 (673)
...|.+++++..+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 4555555555554
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.62 E-value=0.33 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|..++.++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.56 E-value=0.34 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+..++..+...|++++|++.+++++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999988753
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.42 E-value=1.6 Score=40.19 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=61.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAYICLI 456 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~ 456 (673)
++..++..+...|+.+.+...++.+....|.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 5666777788888888888888888888888888888888888888888888888887764 47777777766655
Q ss_pred HH
Q 005856 457 ES 458 (673)
Q Consensus 457 ~~ 458 (673)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.24 E-value=0.5 Score=43.59 Aligned_cols=85 Identities=12% Similarity=-0.064 Sum_probs=37.3
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ 639 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (673)
-|.++|++++|+..+.+++...|. ++..|...+-+|++..++..|..-+..++.... .-..+|..-+.+-...|+.++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 344555555555555555544322 233333444555555555555554444443321 122333333344444444455
Q ss_pred HHHHHHH
Q 005856 640 ADILSRM 646 (673)
Q Consensus 640 a~~~~~~ 646 (673)
|.+=.+.
T Consensus 184 AKkD~E~ 190 (536)
T KOG4648|consen 184 AKKDCET 190 (536)
T ss_pred HHHhHHH
Confidence 4333333
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.04 E-value=11 Score=35.60 Aligned_cols=133 Identities=14% Similarity=0.220 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCC-
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA--VE----RADDALRIFDEMKSFD---VKPNAVTYTALLPGLCDAGK- 281 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~- 281 (673)
+++...+++.+.+.|+..+..+|-+..-.... .. ....+..+|+.|++.. -.++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777777666665543333222 22 2456778888887653 13455556655543 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCcHH-hHHHHHHHHhccCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 282 ---MVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGH--LNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 282 ---~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.+.+..+|+.+.+.|....|.. ....++.......+ ...+..+++.+.+.+++.....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3556677777777776665553 33333333332222 34677888888888888888877665543
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.96 E-value=20 Score=38.50 Aligned_cols=219 Identities=12% Similarity=0.060 Sum_probs=118.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCchhhHHH
Q 005856 422 RGHSKEGNPDSAFEIVKIMGRRGVPRDA-------DAYICLIE-SYLRKGEPADAKTALDSMIED----GHSPASSLFRS 489 (673)
Q Consensus 422 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ 489 (673)
-......++.+|..++.++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3345568889998888877654222221 13333322 234568889998888887653 12233455666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHH--HHHHHcCCCHHH--HHHHHHHHHh--CCCCCC--HH---
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENL---DLVAKI--LEALLMRGHVEE--ALGRIDLMMQ--SGSVPN--FD--- 555 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~g~~~~--A~~~~~~~~~--~~~~p~--~~--- 555 (673)
+..+..-.|++++|..+.+...+..-.-+. ..|..+ ...+...|.... ....+..... .+-.|. +.
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 667777889999999888877665222222 233333 233456674333 2333333222 122333 11
Q ss_pred --HHHHHHHc-cCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 005856 556 --SLLSVLSE-KGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEK----GGVTDWKSSDK 626 (673)
Q Consensus 556 --~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 626 (673)
.+.+.+.+ .+...++..-++-.....+.+- ...+..++......|+.++|...+.++..- +..+++.+...
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 12222222 2223333333332222222222 222236788888899999999998887652 23566777666
Q ss_pred HHHHHH--hcCCcchH
Q 005856 627 LIAGLN--QEGNTKQA 640 (673)
Q Consensus 627 l~~~~~--~~g~~~~a 640 (673)
.+.+.. ..|+.++|
T Consensus 663 ~v~~~lwl~qg~~~~a 678 (894)
T COG2909 663 KVKLILWLAQGDKELA 678 (894)
T ss_pred HhhHHHhcccCCHHHH
Confidence 666644 55666665
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.95 E-value=0.39 Score=28.14 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
|..+...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 300
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.93 E-value=0.31 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 591 KVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.++.+|...|+.+.|.+++++++..++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 578889999999999999999886554
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.82 E-value=19 Score=37.86 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=73.0
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC-----CHhHHHHHHHHHHHcCCCCHHhHHHHHH
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-----QTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (673)
....+.+.|+.+|+.+.+..... ...+ .......+..+|.+.. +...|..++.+..+.+.++.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~-a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKA-ATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-Hhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34566777777777774410000 0011 2223445555555532 4566777777777766555554444333
Q ss_pred HHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc
Q 005856 423 GHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (673)
Q Consensus 423 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (673)
.... ..+...|.++|..+.+.|.. ..+..+..+|. -..+...|..++.+..+.| .|...-....+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 3333 23456677777666665532 22222222221 1224455666666655554 2221222222222333
Q ss_pred CCHHHHHHHHHHHHHcC
Q 005856 498 GRVQTASRVMKSMVEKG 514 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~ 514 (673)
+.++.+...+..+.+.+
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 44555544444444443
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.65 E-value=2.8 Score=36.14 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCccCHhhHHHHHHHHHHcCCHHHH
Q 005856 73 NHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL---GVERSVKSYDALFKLILRRGRYMMA 145 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~A 145 (673)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555544443334444444444443 44555666655555443 1234555666666666666666555
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.61 E-value=0.52 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..|..++.++...|++++|++.++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 457789999999999999999999988753
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.59 E-value=12 Score=35.26 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHH--c----CCHHHHHHHHHHHHhC
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILR--R----GRYMMAKRYFNKMLSE 155 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~ 155 (673)
++...+++.+.+.|+..+..+|-+....... . .....|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666665555443332222 1 1244556666666554
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.51 E-value=7.6 Score=32.68 Aligned_cols=136 Identities=11% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005856 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERY 296 (673)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 296 (673)
+.+..+...+++|+...+..++..+.+.|++.. +..+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444555566677777777777777777776544 333444555555555554443322 2233444444444442
Q ss_pred CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 297 IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
-...+..++..+...|++-+|.++.+..... +......++.+-.+.++...-..+++-..+.+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1113455566677777777777777664322 11123445566666666665555555554443
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.42 E-value=0.5 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.31 E-value=23 Score=37.80 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNL 420 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 420 (673)
....+.-.|+++.|++.+-.. .....+..++...+..|.-.. .....-..+.... .+.+.-+..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~----------~~~~~dAVH~AIaL~~~gLL~---~~~~~~~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN----------EFNRVDAVHFAIALAYYGLLR---VSDSSSAPLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------------T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhh----------ccCcccHHHHHHHHHHcCCCC---CCCccccceeeecCCCCCCcCHHHH
Confidence 344556678888888877652 112234444443333322211 1111112222222 1222456677
Q ss_pred HHHHHhc---CChhHHHHHHHHHHhC
Q 005856 421 IRGHSKE---GNPDSAFEIVKIMGRR 443 (673)
Q Consensus 421 ~~~~~~~---~~~~~A~~~~~~~~~~ 443 (673)
+..|.+. .++.+|.+++-.+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 7777653 5677777777666553
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.20 E-value=5.4 Score=34.27 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444555555544444444322111 122333444444444444444444333
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.13 E-value=9.8 Score=31.61 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=24.0
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
+.++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554444443333333334444445555555555555443
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.79 E-value=0.02 Score=47.57 Aligned_cols=92 Identities=10% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (673)
.+..++..+...+.+.+.+..+..+++.+...+ ...+....+.++..|++.+..+...++++.... .++ ..+
T Consensus 5 ~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~-----~~~ 76 (143)
T PF00637_consen 5 TDPLEISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL-----DKA 76 (143)
T ss_dssp CTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C-----THH
T ss_pred CCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCH-----HHH
Confidence 344555666777777788888888888887655 345677788888888888777777777763322 221 345
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 005856 98 IESYGKKGIVQESVKIFDIM 117 (673)
Q Consensus 98 i~~~~~~~~~~~a~~~~~~~ 117 (673)
+..+.+.|.++.+.-++.++
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCC
T ss_pred HHHHHhcchHHHHHHHHHHc
Confidence 55566666666666655554
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.54 E-value=2.6 Score=39.19 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=54.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC
Q 005856 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG 498 (673)
Q Consensus 420 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (673)
-..-|.++|.+++|+..|...... .| +++++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 456677788888888888776664 34 77777777778888777777766655554321 001112222233333345
Q ss_pred CHHHHHHHHHHHHHcC
Q 005856 499 RVQTASRVMKSMVEKG 514 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~ 514 (673)
...+|.+-++.+++..
T Consensus 180 ~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALE 195 (536)
T ss_pred hHHHHHHhHHHHHhhC
Confidence 5566666666665553
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.44 E-value=14 Score=34.00 Aligned_cols=168 Identities=9% Similarity=0.130 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhccc-CCCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 005856 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK-KGVQWDEDMFEVLIESYGKK-G-IVQESVK 112 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~a~~ 112 (673)
-++-..+++-....-....+.. |..++. ++....+|+.+|+..-. ..+-.|..+...+++..... + ....-.+
T Consensus 112 ~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 112 KEDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 3455566665544331112222 444443 34456778888874322 23445777777777777652 2 2233334
Q ss_pred HHHHHHHc-CCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 005856 113 IFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFED---- 186 (673)
Q Consensus 113 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---- 186 (673)
+.+-+... |-.++..+...++..++..+++..-.++++..... +...|...|..+|+.....|+..-...+.++
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL 267 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL 267 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence 44444332 34677778888889999999999999998887655 5566888899999999999998888887766
Q ss_pred -HHhCCCCcCHHHHHHHHHHHH
Q 005856 187 -MKSRGISLDVVTYNTMINGYN 207 (673)
Q Consensus 187 -~~~~~~~~~~~~~~~ll~~~~ 207 (673)
+.+.++..+...-..+-..+.
T Consensus 268 wikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 268 WIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred EeeecCCcCCHHHHHHHHHHHH
Confidence 345566666666555555443
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.31 E-value=60 Score=39.51 Aligned_cols=327 Identities=12% Similarity=0.112 Sum_probs=176.9
Q ss_pred CCCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHhhcccCCCCCCHHHHHH
Q 005856 18 VPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIE-ILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (673)
Q Consensus 18 ~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (673)
....+...+..+-.+++.+.+|+-.++.-........-...+..+++ +|+..++++...-+...-.. +...+..
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q 1455 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ 1455 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH
Confidence 33445566777888899999999999985221100112233444454 99999999998888774211 3333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcC
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSL 175 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 175 (673)
+ -.....|+++.|...|+.+.+.+ ++...+++.++......|.++..+...+-.... ..+....++.+ +.+-.+.+
T Consensus 1456 i-l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 I-LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred H-HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhc
Confidence 3 45567899999999999999876 344777888887777788888888876666543 23333334333 34446778
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHH--HHHHHcC--CChHHHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHH
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTM--INGYNRF--KKMDEAEKLFAEMKEK--------NIEP-TVISYTTMIKGYV 242 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~~-~~~~~~~ll~~~~ 242 (673)
+++.....+. .. +..+|.+. .....+. .|.-.-.+..+.+.+. +... -...|..+++.+.
T Consensus 1533 qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL 1605 (2382)
T ss_pred chhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH
Confidence 8887777665 22 22333222 2222221 2211111222222211 1110 1123444444332
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHH-HHH----HCCCCCCcHHhHHHHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNA------VTYTALLPGLCDAGKMVEVQKVLR-EMV----ERYIPPKDNSVFMKLLGV 311 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~-~~~----~~~~~~~~~~~~~~l~~~ 311 (673)
-..-.. ..+... ++.++. .-|..-+..-....+..+-+-.++ .+. +.+....-...|....+.
T Consensus 1606 l~el~~----~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri 1679 (2382)
T KOG0890|consen 1606 LLELEN----SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI 1679 (2382)
T ss_pred HHHHHH----HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 211111 111111 112211 112111111111111111111111 111 113333356678888888
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 312 QCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
..+.|+++.|...+-...+.+ . +..+--.+..+-+.|+...|+.+++..++...
T Consensus 1680 aR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1680 ARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888999999988777766654 2 33344555666788999999999998886654
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.25 E-value=34 Score=36.61 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHH-hcCChHHHHHHHhhcccCCCCCCH-----HHHHHHHHHHHhcCCH
Q 005856 36 SEHALQFFRWVERAGLFNHDR--ETHLKMIEILG-RVGKLNHARCILLDMPKKGVQWDE-----DMFEVLIESYGKKGIV 107 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~ 107 (673)
...|++-++.+.+....+|.. .++..++.++. ...+++.|+..+++.....-.++. .....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345677777776544233322 35666777765 778899999999876433211221 1223445566555555
Q ss_pred HHHHHHHHHHHHcC----CccCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 005856 108 QESVKIFDIMKQLG----VERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEG---IEPTRHTYNVMLWGFF--LSLKL 177 (673)
Q Consensus 108 ~~a~~~~~~~~~~g----~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 177 (673)
. |...+++..+.- ..+-...+.-+ +..+...+++..|.+.++.+.... ..|...++..++.+.. ..+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888766531 11112222223 223333478999999988875532 2344445555555544 34556
Q ss_pred HHHHHHHHHHHhCC---------CCcCHHHHHHHHHHHH--cCCChHHHHHHHHHH
Q 005856 178 ETAIRFFEDMKSRG---------ISLDVVTYNTMINGYN--RFKKMDEAEKLFAEM 222 (673)
Q Consensus 178 ~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 222 (673)
+.+.+.++.+.... ..|...+|..+++.++ ..|++..+...++++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66766666653221 1334566777766554 567766666655554
No 315
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=35 Score=36.74 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=86.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDV--VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 245 (673)
=+.|...|+++.|.++-..- |+. .++..-.+.|...+++..|-+++.++.+ .|..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34566777777777665332 232 2333444566777888888888877643 3444444455555
Q ss_pred CHHHHHHHH-HHHHhCCCCCCHHHHHHHHH-----HHH-cCCCH----HHHHHHHHH--------HHHCCCCCCcHHhHH
Q 005856 246 RADDALRIF-DEMKSFDVKPNAVTYTALLP-----GLC-DAGKM----VEVQKVLRE--------MVERYIPPKDNSVFM 306 (673)
Q Consensus 246 ~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~-----~~~-~~~~~----~~a~~~~~~--------~~~~~~~~~~~~~~~ 306 (673)
+.+ +++.| .+=.+ .++|...+-..++. .|. +.++. +.+..-++. +........+.....
T Consensus 431 ~~~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CHH-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 544 33333 22222 23444433332222 111 12221 122211111 111001111222333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 307 KLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
+....+...|+.+....+-.-+.+ |..++..+.+.|.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455566777766665555544 677888888888888888887654
No 316
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.96 E-value=2.7 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=27.8
Q ss_pred ccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
.....++|+..++++++..+.+. +..+..++.+|...|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666544433 3444555666666666666665533
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.84 E-value=1 Score=27.31 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+++.++..|...|++++|.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888999999999999999988775
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.68 E-value=13 Score=30.95 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYD-ALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
.+.++.+++..+++.+.-.. |...... .-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45567777777777766532 3332222 2233456667777777777776554
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.39 E-value=1.3 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.|..++..|...|++++|.+.++++++-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667888899999999999999988763
No 320
>PRK09687 putative lyase; Provisional
Probab=88.27 E-value=23 Score=33.30 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALL 273 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 273 (673)
+..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3344444444432 23333333333433332 12344444444442 34555555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh
Q 005856 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (673)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (673)
.++.+.|+. .+...+-..++.+ + .....+.++...|+. .|...+..+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555553 3333333333321 1 223444555555553 45555555554
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.22 E-value=0.044 Score=45.46 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
+..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++.. ..-+...++..+.+.|.+++|
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~----~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS----NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----cccCHHHHHHHHHhcchHHHH
Confidence 3445555555666666666665544445555566666666665555555554411 111223344455555555555
Q ss_pred HHHHH
Q 005856 571 VKLLD 575 (673)
Q Consensus 571 ~~~~~ 575 (673)
.-++.
T Consensus 90 ~~Ly~ 94 (143)
T PF00637_consen 90 VYLYS 94 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.16 E-value=0.79 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
...++.++...|+.++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3457777888888888877765
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.14 E-value=13 Score=33.19 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 568 IAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
..|...|+++......| .......++....+.|++++|.+.+.+++..+..+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 44555555555543221 133445678888899999999999999998776544
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.91 E-value=31 Score=34.53 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=91.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (673)
.|....-+++..+...-.+.-...+..+++.-+ -+...|..++.+|... ..+.-..+|+++.+..-.+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv 132 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV 132 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH
Confidence 344445555666666555666666666665433 2334555666666555 44555566666665554444
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCchhhHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAYICLIESYLRKGEPADAKTALDSMIED-GHSPASSLFR 488 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 488 (673)
..-..|+..|-+ ++.+.+..+|..+...-++. -...|..+...- ..+.+..+.+..+.... |..--...+.
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 444555555544 55566666666555431110 012333333211 24455555555555432 3323334444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (673)
-+..-|....++.+|++++..+++.+-+ |...-..++.
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 4445566677777777777776665433 3333333433
No 325
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=39 Score=35.59 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=61.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRRGVPRD--ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (673)
++..-|+-++|..+.++|.... .|- ..-..++..+|+-.|+.....+++.-.... ...|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444455666777777776532 111 112233455666666666655655554432 223333333334445556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 501 QTASRVMKSMVEKGVKENLDLVA--KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+....+.+-+.+. ..|.+..=. .+.-+|...|. .+|+.+++.|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7666666665554 333333222 23333444443 667777776664
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.63 E-value=1.1 Score=25.23 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..++.++.+.|++++|.+.+++++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346788888888889998888888765
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.35 E-value=4.8 Score=31.99 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred HHHHHHHcc---CChHHHHHHHHHHhc-CCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 556 SLLSVLSEK---GKTIAAVKLLDFCLG-RDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 556 ~~~~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.+.+++.+. .+..+.+.+++..++ ..+.-.......|+-++++.|+|+.++++++.+++.
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 455666543 345666777777775 222223333345778888888888888888877654
No 328
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.31 E-value=27 Score=33.13 Aligned_cols=150 Identities=14% Similarity=0.010 Sum_probs=74.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc----c
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----D 497 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 497 (673)
..+++..+...+......+ +......+...|.. ..+..+|...+..+.+.|..+- ...+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a---~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEA---LFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHH---HHhHHHHHhcCCCcc
Confidence 4566777777777776543 22333333333332 2345667777776665543222 2223333322 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCC
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR----G---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGK 566 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~ 566 (673)
.|..+|..+++++.+.|..+.......+...|..- + +...|...+.++...+.......+...|.. ..+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 36777777777777776543212233344444332 1 122566666665555433333334433332 235
Q ss_pred hHHHHHHHHHHhcCC
Q 005856 567 TIAAVKLLDFCLGRD 581 (673)
Q Consensus 567 ~~~A~~~~~~~~~~~ 581 (673)
.++|..+|+++.+.+
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 566666666666655
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.23 E-value=11 Score=38.19 Aligned_cols=153 Identities=17% Similarity=0.096 Sum_probs=89.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.+.-.|+++.|-.++..+. ......++..+-+.|..++|+++- .+|+. -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHH
Confidence 3334556666655443321 334445566666677766666542 11221 123344667777
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
.|..+..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 777765554 3456677888888888888888877776532 4456666666777766666666666
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
+.|.. |...+ +|...|+++++.+++.+-
T Consensus 720 ~~g~~-N~AF~-----~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLAFL-----AYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chHHH-----HHHHcCCHHHHHHHHHhc
Confidence 55533 33322 344567888777776554
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=9.5 Score=35.31 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHh-----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTY 164 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 164 (673)
...+....+..-....+++++...+-.++.. |+.. +-...++.+.+ -++++++.++..-+..|+-||..++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 3333344444444456677777766666542 2211 12223333333 4566777777777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 165 NVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
+.++..+.+.+++..|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888777777666654
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.20 E-value=1.3 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555544
No 332
>PRK10941 hypothetical protein; Provisional
Probab=85.66 E-value=15 Score=33.96 Aligned_cols=76 Identities=16% Similarity=-0.055 Sum_probs=53.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG-GVTDWKSSDKLIAGLN 632 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 632 (673)
.+-.++.+.++++.|..+.+.++...|. ++.-+...+-+|.+.|.+..|..=++..+++. ..|+.......+..+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3555667788888888888888887654 45556678888889999999999888888754 3444444444444443
No 333
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.40 E-value=56 Score=34.94 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc--
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEPTVISYTTMIKGYVAV-- 244 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~-- 244 (673)
...+.-.|++|.|.+.+-. ..+...+...+...+..|.-.+-..... ..+.... -.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888888876 2223345555555555443222222111 2222111 011125567777777753
Q ss_pred -CCHHHHHHHHHHHHhC
Q 005856 245 -ERADDALRIFDEMKSF 260 (673)
Q Consensus 245 -~~~~~a~~~~~~~~~~ 260 (673)
.+...|.++|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5677888877766554
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.40 E-value=11 Score=27.96 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCc-chHHHHHHHHH
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNT-KQADILSRMIR 648 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 648 (673)
.-+++.++.+|. +...-..++..+...|++++|++.+-.++...... +-..-..|+..+...|.- +.+....++|.
T Consensus 9 ~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 344556666655 44555578999999999999999999988764322 333444577777777774 34455555443
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.18 E-value=7 Score=28.96 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 73 NHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMK 118 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 118 (673)
=++++-++.+...+.-|++.+..+.+++|.+-+++..|.++|+.++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666666666777777777777777777777777777665
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=17 Score=32.40 Aligned_cols=85 Identities=16% Similarity=0.006 Sum_probs=58.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCChH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGKTI 568 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~~~ 568 (673)
-|.....++.|+..|.+.+..++. ....|..-+.++.+..+++.+..--.+.++ +.|+.. .+...+.....+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 356667788888888887776543 234556667777888888888777777766 677732 3445555677888
Q ss_pred HHHHHHHHHhcC
Q 005856 569 AAVKLLDFCLGR 580 (673)
Q Consensus 569 ~A~~~~~~~~~~ 580 (673)
+|+..++++.+.
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887543
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.97 E-value=2.4 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777776654
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.61 E-value=6.3 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.++.|..+|+++++.+ |+...|..-.++. ..|-++..++..++
T Consensus 95 ~F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 95 YFEKATEYFQKAVDED--PNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcC--CCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 4677777788888764 5666775444433 23555555554443
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.50 E-value=1.4 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.++.++.+.|++++|.+.++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 355555566666666666666655
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=62 Score=34.48 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 005856 200 NTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
..|+..|...++++.|..++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336777777777777777765554
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.19 E-value=22 Score=29.15 Aligned_cols=52 Identities=13% Similarity=-0.129 Sum_probs=31.8
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
..++.+++..+++.+.-..|..+..-..-...+...|++.+|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666666655544444444455556666777777777666654
No 342
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.14 E-value=65 Score=34.61 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=28.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
....-+......++++.+...+..|.... .....-..-+..++...|+.++|...|+.+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444445566665555555553321 122222333445545556666666666655
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.65 E-value=12 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.+...|+|++|..+.+.. +.|+.+.| ++-+-++.|-...+...+.++-.++.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw--~ALce~rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPW--LALCEWRLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHH--HHHHHHhhccHHHHHHHHHHHHhCCC
Confidence 355688888888776522 45666666 44455678888877777777776663
No 344
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.49 E-value=44 Score=32.22 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc---cCCHHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE---DGRVQTASRVMK 508 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 508 (673)
.-+.+++++.+.+. .+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34456666655532 355566666666666666666666676666532 2245555555544332 223455555554
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 005856 509 SMVEK------GV------KEN-----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 509 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (673)
+.++. +. .+. ...+..+...+.++|..+.|+.+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44332 11 000 12233344455678888888888888887543
No 345
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=83.35 E-value=42 Score=31.83 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=77.0
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KG 463 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 463 (673)
..+++..+...+......+.+ .....+...|.. ..+...|..+|+.+.+.|. ......|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 345666666666666654322 333344444432 2355667777776665542 2233334444443 23
Q ss_pred ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc-----C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----C
Q 005856 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFED-----G--RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----R 532 (673)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 532 (673)
+..+|...+++..+.|..+...+...+...+... - +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 6667777777777666544312222223333221 1 2235666666666665 33444444444432 2
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 005856 533 GHVEEALGRIDLMMQSGS 550 (673)
Q Consensus 533 g~~~~A~~~~~~~~~~~~ 550 (673)
.++++|...|+...+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 256777777776666555
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.18 E-value=9.5 Score=35.29 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=69.0
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYI 453 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 453 (673)
....+...++..-....+++.+...+-++.... .++. +-...++.+.+ -++++++.++..-.+-|+-||.++++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 344455555655556678888888777766543 1111 22233333333 36778888888888889999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 454 CLIESYLRKGEPADAKTALDSMIED 478 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~~ 478 (673)
.+++.+.+.+++.+|..+...|+..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999998888877654
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.18 E-value=11 Score=27.92 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
++.+-++.+....+.|+.....+.+++|.+.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555666666666666666666666666666555
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.72 E-value=57 Score=32.87 Aligned_cols=60 Identities=8% Similarity=0.119 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
...-+++..+..+-...-+..+..+|...| -+...|..++.+|... ..+.-..+++++++
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 334444444444444444445555554432 2444445555554444 33444444444444
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.64 E-value=18 Score=27.19 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666777667666666654
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.60 E-value=23 Score=28.34 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCchhhHHHHHHHHhccC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDG---RVQTASRVMKSMVE-KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.++..+--.+..++.++. +..+.+.+++.+.+ ..+.-.......|.-++.+.|++++++++.+.+++ ..|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 355555555666666654 45667788888876 33333455556677788888899999988888887 666643
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=23 Score=31.58 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=60.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhh-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSL-FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (673)
.|.....+..|...+.+.+. +.|+..+ |..-+..+.+..+++.+..--.+.++..+. .+.....+...+.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 35556678889998887775 4577644 445555667788898888877777776332 2223344667777888899
Q ss_pred HHHHHHHHHHh
Q 005856 537 EALGRIDLMMQ 547 (673)
Q Consensus 537 ~A~~~~~~~~~ 547 (673)
+|+..+.+..+
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.93 E-value=1.4e+02 Score=36.79 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHh
Q 005856 236 TMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (673)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (673)
.+..+-.+.+.+..|+-.++.-..... .....-|..+...|...++++.+..+...... ++. +..-+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPS-LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------Ccc-HHHHHHHHH
Confidence 344455566667777776666311100 11122333333467777777776666553111 222 223333445
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
..|++..|...|+.+.+.+ ++...+++.++......|.++..+...+..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 6677777777777777664 333555666666555666666665544433
No 353
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.81 E-value=61 Score=32.60 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 005856 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE-SYGKKGIVQESVKIFDI 116 (673)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~ 116 (673)
.-..+|+.+... ++.|...|...+..+.+.+.+.+...+|.+|....+. ++..|..-.. .|-...+++.|..+|.+
T Consensus 89 rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 344555555544 3567777777777666666677777777776654322 4444433332 22233346667777766
Q ss_pred HHHcC
Q 005856 117 MKQLG 121 (673)
Q Consensus 117 ~~~~g 121 (673)
..+..
T Consensus 166 gLR~n 170 (568)
T KOG2396|consen 166 GLRFN 170 (568)
T ss_pred HhhcC
Confidence 66643
No 354
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.53 E-value=61 Score=32.43 Aligned_cols=105 Identities=14% Similarity=0.017 Sum_probs=62.0
Q ss_pred HHHcCCCHHHHHHHHHHHHh---CC--CCCC------HHHHHHHHHccCChHHHHHHHHHHhc-------CCCCC-----
Q 005856 528 ALLMRGHVEEALGRIDLMMQ---SG--SVPN------FDSLLSVLSEKGKTIAAVKLLDFCLG-------RDCII----- 584 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~---~~--~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~-------~~~~~----- 584 (673)
.++-.|++.+|.+++-..-- .| +.|. ++.++-+..+.|.+.-+..+|.+++. .|.+|
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556777777766543221 11 2332 23344455566777777777777663 23222
Q ss_pred -----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 585 -----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 585 -----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
+.+.....+-.|...|+...|.+.|.+.+..- ...++.|-.|..++..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 13344467788888888888888888877653 3355666666666554
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=30 Score=31.69 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH----HhCCCCCC
Q 005856 523 AKILEALLMRGHVEEALGRIDLM----MQSGSVPN 553 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~ 553 (673)
..++..+.+.|.+.+|+.++..+ .+...+|+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 45778888999999999876544 44556666
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.33 E-value=28 Score=28.50 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSY-DALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
...++.+++..+++.|.-.. |+.... ..-...+...|++.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 44677777777777776532 333222 12223456777888888888877654
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.05 E-value=43 Score=30.40 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=135.8
Q ss_pred CCCCCCCchhhHHHHHHHH-HccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 005856 372 PQSTLDMEASSYNPMIQHL-CHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--- 443 (673)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 443 (673)
..++..||+..=+..-.+- .+...+++|+.-|++..+.. ...-.+...++..+.+.+++++....++++..-
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445556655433332221 23458889999999988765 233446677889999999999999888877531
Q ss_pred CC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc---
Q 005856 444 GV--PRDADAYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (673)
Q Consensus 444 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (673)
.+ .-+....|.+++....+.+.+--.++++.-.+. +-..-..|-..+...|...|.+..-.++++++...
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 124456677777666666655544444433221 11111223345667778888888888888887653
Q ss_pred --CCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCC--HHHHHHHHH-----ccCChHHHHHHHHHH
Q 005856 514 --GVK------ENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN--FDSLLSVLS-----EKGKTIAAVKLLDFC 577 (673)
Q Consensus 514 --~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~~~~-----~~g~~~~A~~~~~~~ 577 (673)
|.. --...|..-+..|....+-.+-..+|++.+. ....|. ....+.-|+ +.|++++|-.-|-.+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 0134555566777777777777778887665 223333 333444443 578888887655445
Q ss_pred hcCC---CCCC---hHhHHHHHHHHHhcC
Q 005856 578 LGRD---CIID---LASYEKVLDALLAAG 600 (673)
Q Consensus 578 ~~~~---~~~~---~~~~~~l~~~l~~~g 600 (673)
.+.- .+|- .--|..++.++.++|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 5431 1222 233566777777765
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.98 E-value=12 Score=32.75 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=58.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIES 458 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~ 458 (673)
|.+..+..+.+.+...+++...+.-.+..|.+...-..+++.+|-.|++++|..-++..-+. ...+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667778889999999999888888888888889999999999999998888776653 223345566666654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.93 E-value=5.8 Score=28.09 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=40.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 596 LLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
++...+..+|+..+++++++-..+. +..+-.|+.+|..-|++.+.......
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999998754432 67777799999999999999765433
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.80 E-value=86 Score=33.67 Aligned_cols=184 Identities=7% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHhhcc-cCCCCCC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCccCHh-----hHHHHHHHHHHcCCHHH
Q 005856 74 HARCILLDMP-KKGVQWD--EDMFEVLIESYG-KKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMM 144 (673)
Q Consensus 74 ~a~~~~~~~~-~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~ 144 (673)
.|+..++.+. +..++|. ..++..+...+. ...+++.|...+++.....-.++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3455666555 3333332 334555666554 6689999999999876543222222 2334566666666555
Q ss_pred HHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHH--cCCChHH
Q 005856 145 AKRYFNKMLSEG----IEPTRHTYNVM-LWGFFLSLKLETAIRFFEDMKSRG---ISLDVVTYNTMINGYN--RFKKMDE 214 (673)
Q Consensus 145 A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~ 214 (673)
|...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 988888876541 11222233332 222223379999999998876542 3344555555555543 4566677
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005856 215 AEKLFAEMKEKN---------IEPTVISYTTMIKGYV--AVERADDALRIFDEMK 258 (673)
Q Consensus 215 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 258 (673)
+.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777663321 1234566777766554 6677777776666654
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.56 E-value=20 Score=26.60 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCC-CHHHHHHHHHHHHhcCCH
Q 005856 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-DEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 107 (673)
.-++.....+ |.+..+...+...+...|+++.|.+.+-.+++.+... +...-..++..+.-.|.-
T Consensus 9 ~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 9 AALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3345555555 6788888888889999999999999888888775443 344445555555444443
No 362
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=84 Score=33.34 Aligned_cols=546 Identities=13% Similarity=0.094 Sum_probs=240.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcc-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP-KKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 113 (673)
.....+...+.+.+.+.++-...+-..+..+|...|++++|+..--..- .-.+.++...+..++.-|... -.+.+.+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~ 116 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASET 116 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHH
Confidence 3445666666666666444333344566689999999999998876553 334455555555554433321 11222222
Q ss_pred HHHHH-HcCCccCH-hhHHHHHHHHHHcCCHHHHHH---------HHHH-HHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 005856 114 FDIMK-QLGVERSV-KSYDALFKLILRRGRYMMAKR---------YFNK-MLSEGIEPTRHTYNVMLWGFFLSLK-LETA 180 (673)
Q Consensus 114 ~~~~~-~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~---------~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 180 (673)
+..-. ..++++.. ...+.++..|...+++..|+. ++++ +.+....++ ..+.++..+....+ .+--
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR 194 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFR 194 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHH
Confidence 22111 11111111 123344444444444444433 2333 222222222 23333433333222 2333
Q ss_pred HHHHHHHHh---CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 181 IRFFEDMKS---RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 181 ~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
.+++..+.+ ....|| |..+.++|....+.+.+.++++++.+.. .....|......+....+ +--..+.+.+
T Consensus 195 ~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e~--~~llayQIAFDL~esasQ-efL~~v~~~l 268 (929)
T KOG2062|consen 195 NKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKED--DLLLAYQIAFDLYESASQ-EFLDSVLDRL 268 (929)
T ss_pred HHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHhhccCH-HHHHHHHHHc
Confidence 334444333 223444 4457788888899999999999998742 123344444444322211 1111122222
Q ss_pred HhC---CCCC---------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHH----
Q 005856 258 KSF---DVKP---------NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAA---- 321 (673)
Q Consensus 258 ~~~---~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---- 321 (673)
... +-.| ...+....+..+.+.+..+. .+++...+.- ...-..+...+.+++...|-...-
T Consensus 269 ~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD~--~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~ 345 (929)
T KOG2062|consen 269 PADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTDL--LILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRN 345 (929)
T ss_pred ccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCchH--HHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHh
Confidence 211 1111 11111222222233333221 1222222210 000111222234445554432211
Q ss_pred -HHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhH----HHHHHHHHccCC
Q 005856 322 -ADVLKAMIRLSIPTEAGHYGILI-ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSY----NPMIQHLCHNGQ 395 (673)
Q Consensus 322 -~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~ 395 (673)
+.++.+... -.-|+... -+....|...++.+++.-.+ |... +....| ..+.-++.+.|.
T Consensus 346 NL~WlskAtN------WaKFtAtAsLGvIH~G~~~~~~~ll~pYL-------P~~~--~~~s~y~EGGalyAlGLIhA~h 410 (929)
T KOG2062|consen 346 NLDWLSKATN------WAKFTATASLGVIHRGHENQAMKLLAPYL-------PKEA--GEGSGYKEGGALYALGLIHANH 410 (929)
T ss_pred chhHHhhcch------HhhhhhhhhcceeeccccchHHHHhhhhC-------CccC--CCCCCccccchhhhhhccccCc
Confidence 111111110 00011111 12345677788888887764 2211 111111 122233444455
Q ss_pred HhHHHHHHHHHHHcCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCChHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY--ICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~ 472 (673)
.+...+++....+... +....-.+|.-++...|.- -.++|+.++..-...+..+- ..+..+++-.|... .+.+
T Consensus 411 G~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eai 486 (929)
T KOG2062|consen 411 GRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAI 486 (929)
T ss_pred CccHHHHHHHHHHhccchhhhhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHH
Confidence 5557777777666653 3333334455455544433 23455555542122222221 12233344444332 1233
Q ss_pred HHHHHcCC-CCchhhHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 473 DSMIEDGH-SPASSLFR--SVMESLFEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 473 ~~~~~~~~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
++|..... .-...+.. .+.-+|..-|+-++|..+.+++.... .|- ..-...++.+|+-.|+-....+++.-...
T Consensus 487 edm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 487 EDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 33332110 01111222 22234556677788999999987753 322 22234567788888886655555543222
Q ss_pred CCCCCCH---HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHH--HHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 548 SGSVPNF---DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYE--KVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 548 ~~~~p~~---~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
....|. ..+.-.+.-..+.+....+++-..+ ..+|-...-. .|+-+|...| ..+|+.+++.+...
T Consensus 566 -D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 566 -DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSD 635 (929)
T ss_pred -ccchHHHHHHHHHheeeEecChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcC
Confidence 122222 1222223346678888888874333 3333322112 3334444444 46799999998874
No 363
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.30 E-value=61 Score=31.69 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=45.4
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
...++..++..+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888888888888888888877643211 233344445556677888888888877765
No 364
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.16 E-value=37 Score=34.84 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 005856 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (673)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 98 (673)
|+...+.+...|.++|-.++|+++-. .+.+-+ ....+.|+.+.|.++..+.. +..-|..|.
T Consensus 613 ~k~~rt~va~Fle~~g~~e~AL~~s~---------D~d~rF----elal~lgrl~iA~~la~e~~------s~~Kw~~Lg 673 (794)
T KOG0276|consen 613 PKEIRTKVAHFLESQGMKEQALELST---------DPDQRF----ELALKLGRLDIAFDLAVEAN------SEVKWRQLG 673 (794)
T ss_pred chhhhhhHHhHhhhccchHhhhhcCC---------Chhhhh----hhhhhcCcHHHHHHHHHhhc------chHHHHHHH
Confidence 35566777888888888888876542 122222 23457789999988876552 566789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (673)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 178 (673)
++....+++..|.+.|..... |..|+-++...|+.+....+-....+.|.. | ...-++...|+++
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYE 738 (794)
T ss_pred HHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHH
Confidence 999999999999999988765 667777888888888777776666666532 2 2334566789999
Q ss_pred HHHHHHHHHH
Q 005856 179 TAIRFFEDMK 188 (673)
Q Consensus 179 ~a~~~~~~~~ 188 (673)
++.+++..-.
T Consensus 739 ~C~~lLi~t~ 748 (794)
T KOG0276|consen 739 ECLELLISTQ 748 (794)
T ss_pred HHHHHHHhcC
Confidence 9998886653
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.81 E-value=2.6 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=14.1
Q ss_pred HHHHHHhcCChHHHHHHHhhcccC
Q 005856 62 MIEILGRVGKLNHARCILLDMPKK 85 (673)
Q Consensus 62 l~~~~~~~g~~~~a~~~~~~~~~~ 85 (673)
+.++|...|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 366
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.31 E-value=25 Score=26.55 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=15.7
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 76 RCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIM 117 (673)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 117 (673)
.+-++.+...+..|++.+..+.+.+|.+-+++..|.++|+-+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444443
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.87 E-value=54 Score=30.20 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=62.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc-----CCCCCHHH-------H-HHHHHHHHcCCCHHHHHHHHHHHHh--CCCCCCHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVEK-----GVKENLDL-------V-AKILEALLMRGHVEEALGRIDLMMQ--SGSVPNFD 555 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~-------~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~ 555 (673)
.+-+.-..|+..|.+..++..+. +...+... + ..=+.++...++|.+++...-+--+ ..+.|...
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 33455567888888877776653 01111110 1 1225677777788777654322221 12344432
Q ss_pred -HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH-----HHhcCChHHHHHHH
Q 005856 556 -SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA-----LLAAGKTLNAYSIL 609 (673)
Q Consensus 556 -~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~g~~~~A~~~~ 609 (673)
--+-.|.+.|......++-..-+...-+-+...|..+++. +.-.|.+.+|++++
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2344566777777777766644443211122335444444 44478888888776
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.75 E-value=7.6 Score=39.19 Aligned_cols=106 Identities=13% Similarity=0.022 Sum_probs=58.2
Q ss_pred HHhCCCCCCHHH--HHHHHH-ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 005856 545 MMQSGSVPNFDS--LLSVLS-EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (673)
Q Consensus 545 ~~~~~~~p~~~~--~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (673)
+.+++..|-|.. ....|. ..|+...|...+..++...|.-.......|+..+.+.|-..+|-.++.+.+.-. ...+
T Consensus 598 ~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sep 676 (886)
T KOG4507|consen 598 AINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEP 676 (886)
T ss_pred HhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCc
Confidence 334445555432 223333 356666666666666665544444455566666666666666666666666554 3344
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 622 KSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
..+..++.+|....+.+.|....+...+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 444456666666666666644444444444
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.50 E-value=71 Score=31.38 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=95.8
Q ss_pred HcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCch
Q 005856 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY---LRKGEPADAKTALDSMIEDGHSPAS 484 (673)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~ 484 (673)
...|-...++..+...+...|+.+.|.++++++.-. -+ ..+......+ ...|... + .....-|.
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~---~e-~~~~~~F~~~~~~~~~g~~r--------L-~~~~~eNR 100 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA---FE-RAFHPSFSPFRSNLTSGNCR--------L-DYRRPENR 100 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HH-HHHHHHhhhhhcccccCccc--------c-CCccccch
Confidence 445777888888888899999999888888877531 00 0010001000 0001000 0 00111233
Q ss_pred hhHHHH---HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh--C----CCCCCH
Q 005856 485 SLFRSV---MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEALGRIDLMMQ--S----GSVPNF 554 (673)
Q Consensus 485 ~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~----~~~p~~ 554 (673)
..|.++ +..+.+.|-+..|.++.+-+...++.-|+-....++..|+ +.++++--+++++.... . ..-|++
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 333333 4567788999999999999999877756665556666665 67788877887776554 1 135664
Q ss_pred H-HHHHHHHccCCh---------------HHHHHHHHHHhcC
Q 005856 555 D-SLLSVLSEKGKT---------------IAAVKLLDFCLGR 580 (673)
Q Consensus 555 ~-~~~~~~~~~g~~---------------~~A~~~~~~~~~~ 580 (673)
. +..-++...++. +.|...+++++..
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 3 344444455555 8888888888775
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.31 E-value=26 Score=32.15 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=12.1
Q ss_pred HHhcCCChHHHHHHHHHHHH
Q 005856 29 VLHGAKNSEHALQFFRWVER 48 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~ 48 (673)
.+.-..|+..|++..++..+
T Consensus 44 ~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445577777777766644
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.05 E-value=20 Score=30.48 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 005856 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (673)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (673)
+++|.+.++.....+ |.+...+..-..++...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHH
Confidence 567777777777766 77887766655555443
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.50 E-value=71 Score=30.84 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 005856 200 NTMINGYNRFKKMDEAEKLFAEMKEKNI 227 (673)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 227 (673)
..+......+|..+.|..+++.+.+.++
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3344445567777777777777776653
No 373
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.41 E-value=9.5 Score=24.80 Aligned_cols=27 Identities=11% Similarity=-0.090 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 590 EKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 590 ~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..++-++++.|++.+|.+.++.+++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 357788899999999999999988764
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.34 E-value=57 Score=29.67 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=89.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHh
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVA 416 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~ 416 (673)
++..+.+.+++++....|.+++.--. ......-+..+.+++++......+.+.-.++++.-.+.- ..--.|
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIk---SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIK---SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH---HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34445555666655555555543210 000011233455666666655566655555555433221 111224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCC-------HHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCch
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRG----VPRD-------ADAYICLIESYLRKGEPADAKTALDSMIED-GHSPAS 484 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 484 (673)
-+.|...|...+.+.+..++++++...- -..| ...|..-|..|....+-..-..++++.+.- .--|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 4667788888888888888888776421 1111 345666777888887777777777776532 122444
Q ss_pred hhHHHHHHHH-----hccCCHHHHHHHHHHHH
Q 005856 485 SLFRSVMESL-----FEDGRVQTASRVMKSMV 511 (673)
Q Consensus 485 ~~~~~l~~~~-----~~~g~~~~a~~~~~~~~ 511 (673)
... .+++-| .+.|.+++|-.-|-++.
T Consensus 228 lIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 228 LIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 433 344444 45678887764444433
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.97 E-value=32 Score=26.60 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..+.+++.+.++ ....|..++..|...|.+++|.+++.+...
T Consensus 26 ~C~~~~~e~~L~---------~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 26 YCDLEEVEEVLK---------EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHH---------HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456677766665 234577888999999999999999998887
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.70 E-value=87 Score=31.43 Aligned_cols=105 Identities=17% Similarity=0.073 Sum_probs=58.4
Q ss_pred HHccCCHhHHHHHHHHHHHcC----CCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHh-------CCCCCCH----
Q 005856 390 LCHNGQTGKAEIFFRQLMKKG----VLD-----PVAFNNLIRGHSKEGNPDSAFEIVKIMGR-------RGVPRDA---- 449 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~---- 449 (673)
+.-.|++.+|.+++-..--.. ..+ -..+|.+...+.+.|.+..+..+|..+.+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344577777766655432211 111 12345666666677777777777766653 2433321
Q ss_pred -------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 450 -------DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 450 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
.+|| ..-.|...|++-.|.+.|.+... -+..++..|..+..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~-vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH-VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 1222 23345666777777777777665 245666777777776653
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.52 E-value=12 Score=29.99 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
++.++|+.+...++... ...|...+..+...|++.+|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77777777776655443 455566667777777777777777653
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.48 E-value=5.3 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.|..++..+...|++++|...+++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556777777888888888888777654
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.70 E-value=11 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
..++-++.+.|++++|.+..+.+++ ..|++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3455667777777777777777777 667643
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.03 E-value=44 Score=33.07 Aligned_cols=54 Identities=7% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchh--hHHHHHHHH--hccCCHHHHHHHHHHHHHc
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASS--LFRSVMESL--FEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 513 (673)
+.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556666666666666654 333333 222333332 2355566666666665444
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.02 E-value=98 Score=31.24 Aligned_cols=81 Identities=6% Similarity=-0.034 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHcCCChHHHHHHHHH
Q 005856 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMING-YNRFKKMDEAEKLFAE 221 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~ 221 (673)
.....+|+..... ...|+..|...+..+-+.+.+.+...+|.+|....+. ++..|-....- |-..-+++.|..+|..
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3444555555443 3447777777777666667677777888777765322 33333332222 2223337777777777
Q ss_pred HHHC
Q 005856 222 MKEK 225 (673)
Q Consensus 222 ~~~~ 225 (673)
-...
T Consensus 166 gLR~ 169 (568)
T KOG2396|consen 166 GLRF 169 (568)
T ss_pred Hhhc
Confidence 6664
No 382
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.52 E-value=64 Score=28.84 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCH-------HHHHHHHHHHHhCCCCCC----HHH----HHHHHHccCChHHHHHHHHHHhcCCCCCC
Q 005856 521 LVAKILEALLMRGHV-------EEALGRIDLMMQSGSVPN----FDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p~----~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (673)
.+-.+++.|...|+. ..|++.|++..+....|. ... ++....+.|++++|.++|.+.+...-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344556666666653 455555555555333332 112 33334468888888888888887653333
No 383
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.67 E-value=18 Score=36.79 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=66.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A 605 (673)
-.|+...|...+..... ..|. ...+...+.+.|-..+|-.++.+++... ...+-.+..++.++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 46888899888877665 4443 4567788888888899999998888887 33455556889999999999999
Q ss_pred HHHHHHHHHcCC
Q 005856 606 YSILFKIMEKGG 617 (673)
Q Consensus 606 ~~~~~~~~~~~~ 617 (673)
++.++++++...
T Consensus 696 ~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 696 LEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhcCC
Confidence 999999998653
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.32 E-value=1.6e+02 Score=32.60 Aligned_cols=26 Identities=38% Similarity=0.637 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 78888888889999999999988854
No 385
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.30 E-value=9.1 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
++++|+.++++++..+ ..|++++|+++|.+.++.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
Confidence 3456677777665543 356777777777776653
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.87 E-value=71 Score=28.24 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEAL 529 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 529 (673)
.+..++.+.+.+...+++...++-.+.. +.|...-..++..++-.|+|++|..-++-..+..+ .+....|..++.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3445667778888889988888877643 33444556677888899999999988888776633 33445666666532
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCC--------HH-HHHHHHH-c-cCChHHHHHHHHHHhcCCCCC
Q 005856 530 LMRGHVEEALGRIDLMMQSGSVPN--------FD-SLLSVLS-E-KGKTIAAVKLLDFCLGRDCII 584 (673)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~--------~~-~~~~~~~-~-~g~~~~A~~~~~~~~~~~~~~ 584 (673)
. +-++...-+..|. +. .+..+++ + .|.-+.+..+-+.+++..+.+
T Consensus 83 a----------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 83 A----------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H----------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2 1122333333333 22 2333332 2 334454566667777776554
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.51 E-value=93 Score=29.00 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHH-cCCccCHhhHHHHHHHHHH-cCC-HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 105 GIVQESVKIFDIMKQ-LGVERSVKSYDALFKLILR-RGR-YMMAKRYFNKMLS-EGIEPTRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~-~g~-~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 180 (673)
....+|+.+|+...- ..+-.|...-..+++.... .+. ...-.++.+-+.. .|..++..+...++..++..+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777773221 2244667777777777665 222 2222233333332 24567888889999999999999999
Q ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHH
Q 005856 181 IRFFEDMKSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAE-----MKEKNIEPTVISYTTMIKGYV 242 (673)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~~ 242 (673)
.++++..... +..-|...|..++......|+..-..++.++ +.+.++..+...-.++-+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 9999998766 6667899999999999999999888887766 234456656555555544443
No 388
>PRK09687 putative lyase; Provisional
Probab=70.33 E-value=97 Score=29.15 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=6.9
Q ss_pred cCHhhHHHHHHHHHHcC
Q 005856 124 RSVKSYDALFKLILRRG 140 (673)
Q Consensus 124 ~~~~~~~~l~~~~~~~g 140 (673)
++.......+.++...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33434444444444433
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.56 E-value=46 Score=25.07 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=57.0
Q ss_pred HHhcCC--ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 29 VLHGAK--NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 29 ~l~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
+|...| ..++|..+-+|+...+ .-...+-.+-+..+.+.|+|++|..+.+.+. .||...|..+.. .+.|.
T Consensus 12 AL~gTG~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl 83 (115)
T TIGR02508 12 ALIGTGHHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGL 83 (115)
T ss_pred HHHHccchHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--Hhhcc
Confidence 344444 5678888888886543 1122233334456678888888888877663 467777766543 46777
Q ss_pred HHHHHHHHHHHHHcCCccCHhhH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSY 129 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~ 129 (673)
.+.+...+.++...| .|....|
T Consensus 84 ~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 84 GSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHH
Confidence 777777777777665 3444443
No 390
>PF13934 ELYS: Nuclear pore complex assembly
Probab=68.62 E-value=91 Score=28.17 Aligned_cols=137 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH--ccCChHHHHHHHHH
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDSLLSVLS--EKGKTIAAVKLLDF 576 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~~~~--~~g~~~~A~~~~~~ 576 (673)
..+-..+++.+...+.. +..-...+...+...+.... ....++... .++.|.+...+.++. ..+++++|..++
T Consensus 26 ~~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L-- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL-- 101 (226)
T ss_pred HHHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh--
Q ss_pred HhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 577 CLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
..+...+.....++.++...|+...|..+++-..-....++... +......+|...||-...+.
T Consensus 102 ---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~---~~~~~La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 102 ---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALT---LYFVALANGLVTEAFSFQRS 165 (226)
T ss_pred ---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHH---HHHHHHHcCCHHHHHHHHHh
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.20 E-value=55 Score=34.70 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
+...-..++..|.+.|-.+.|.++.+.+..+-. ...-|..-+..+.+.|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555555555555544433211 11234444444455555554444444443
No 392
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=66.98 E-value=37 Score=27.03 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
++..++|+.+...++... ...|...+..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666655544 3344566666667777777777765
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.80 E-value=1.4e+02 Score=29.47 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=33.7
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcc
Q 005856 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP 83 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 83 (673)
....|++.-..+++ .+ |-...++..+..++...|+...|.+++++.+
T Consensus 21 v~~~Dp~~l~~ll~----~~--PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 21 VQSHDPNALINLLQ----KN--PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHccCHHHHHHHHH----HC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34446666555542 22 6777888889999999999998888888653
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.80 E-value=4 Score=38.21 Aligned_cols=49 Identities=12% Similarity=-0.105 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcc
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMP 83 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 83 (673)
.|.++.|++.|..+...+ |++...|..-.+++.+.+.+..|++=+....
T Consensus 127 ~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred CcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 344444444444444443 3444444444444444444444444444333
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.20 E-value=28 Score=34.33 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=21.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...|..+|-+|.-.++|.+|++.|..++.
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888877777653
No 396
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.19 E-value=1.3e+02 Score=28.57 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=11.4
Q ss_pred cCChHHHHHHHHHHHHcCCC
Q 005856 599 AGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~ 618 (673)
..++.+|..+|-..+..-.+
T Consensus 194 vR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHhHHHHHHHHHHHcccccc
Confidence 45666666666665554433
No 397
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.75 E-value=98 Score=27.11 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=55.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHcCCChH
Q 005856 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---GISLDVVTYNTMINGYNRFKKMD 213 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~ 213 (673)
.+.| -+.|...|-++...+.--++.....+.. |....+.+++..++-...+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3434 4677888888877665445555544444 44577888999888887653 33568888999999999999888
Q ss_pred HHH
Q 005856 214 EAE 216 (673)
Q Consensus 214 ~a~ 216 (673)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.85 E-value=1.5e+02 Score=33.53 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-CC-CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEK-GV-KENL-DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDS 556 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 556 (673)
|..+++.+.+.+-.+.+.++-..+++. +. .|.. .+++.+.......|.+-+|.+.+- ..|+ ...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~------~npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL------RNPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH------cCCcHHHHHHHHHH
Confidence 556666777778888888877777765 11 1222 345666777777888877776543 2333 223
Q ss_pred HHHHHHccCCh------------HHHHH-HHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 557 LLSVLSEKGKT------------IAAVK-LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 557 ~~~~~~~~g~~------------~~A~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
++..+.++|.+ ++... +++.+-...+......|..|-.-+...+++..|..+.-+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 55555555544 34444 455455544443444554444444567888887766544
No 399
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.40 E-value=62 Score=24.22 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccC
Q 005856 504 SRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (673)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (673)
.+.++++...+....+.....|.-.|.+.|+.+.|++-|+.=.. .-|....+++.+.+.+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFLmk~~ 116 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFLMKNG 116 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHHHHcc
Confidence 34455555443333334444566667777777777777765444 6666666666665443
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.20 E-value=88 Score=25.72 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=37.2
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICL 455 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l 455 (673)
.+.++......+.......+++.+.... ..+...|..++.+.+...- --.+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444544445555555555555442221 2233445555555543333 22334445555554455555555555
Q ss_pred HHHHHh
Q 005856 456 IESYLR 461 (673)
Q Consensus 456 ~~~~~~ 461 (673)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 401
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.00 E-value=1.7e+02 Score=29.05 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 005856 488 RSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQSG 549 (673)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 549 (673)
..++.-|...|+..+|.+.++++ |++. ....+.+++.+.-+.|+-...+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45556666667777776666654 2221 23344556666666666556666666655544
No 402
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.06 E-value=11 Score=35.43 Aligned_cols=84 Identities=20% Similarity=0.088 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHccCChHHHHH
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~ 572 (673)
.|.+++|++.|...+..++. ....|..-..++.+.+++..|++-+....+ +.||. ..-..+..-.|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 44555555555555554322 333333344444555555555555544444 33331 111222223455555555
Q ss_pred HHHHHhcCCCC
Q 005856 573 LLDFCLGRDCI 583 (673)
Q Consensus 573 ~~~~~~~~~~~ 583 (673)
.+..+.+.++.
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 55555554443
No 403
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.94 E-value=1.3e+02 Score=27.12 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=14.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 005856 458 SYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
.-...+++.+|+.+|++.....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777766543
No 404
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.82 E-value=2.2e+02 Score=29.52 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=32.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCC----------CCCHHHHHHHHHHHHhcCChHHHHHHHhh
Q 005856 31 HGAKNSEHALQFFRWVERAGLF----------NHDRETHLKMIEILGRVGKLNHARCILLD 81 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 81 (673)
.....+++|...|.-+...... |-...++..+..++..+|+.+-+..++++
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR 309 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIER 309 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445677888888777655310 12234566667777888887777776664
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.76 E-value=58 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=12.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 005856 525 ILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
++......|++++|+..+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455666666666555544
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.87 E-value=80 Score=24.20 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIF 114 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 114 (673)
..++|-.+.+|+...+ .....+--+-+..+.+.|+|+.|... ......||...|-.+- -.+.|--+.+...+
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 5677888888877655 22233333444556677777777222 1112235655555443 34667777777777
Q ss_pred HHHHHcC
Q 005856 115 DIMKQLG 121 (673)
Q Consensus 115 ~~~~~~g 121 (673)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666544
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.16 E-value=25 Score=20.60 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
+..++..+...|++++|++++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4467888889999999999844
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.86 E-value=75 Score=25.18 Aligned_cols=45 Identities=7% Similarity=0.167 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 224 (673)
..+-+..+...++.|+..+...-++++.+.+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455555566666666666666666666666666666554
No 409
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.75 E-value=33 Score=34.17 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=54.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----SLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~~~~~~g~ 566 (673)
+..+...++++.|..++.++++.++. ....|..-..++.+.+++..|+.=+..+.+ ..|.+. .-+.++.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHH
Confidence 34456667788888888888776432 233333334667777777777766666666 446532 12344556677
Q ss_pred hHHHHHHHHHHhcCC
Q 005856 567 TIAAVKLLDFCLGRD 581 (673)
Q Consensus 567 ~~~A~~~~~~~~~~~ 581 (673)
+.+|...|++.....
T Consensus 88 ~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLA 102 (476)
T ss_pred HHHHHHHHHHhhhcC
Confidence 777777777666653
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.86 E-value=1e+02 Score=30.51 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=42.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 005856 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDAD--AYICLIESYL--RKGEPADAKTALDSMIED 478 (673)
Q Consensus 421 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 478 (673)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44555889999999999999986 555554 4555555555 456788999999987753
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.34 E-value=1.7e+02 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
++......|..+|.+.+|.++.++.+... +.+...+-.++..+...||--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33444555666667777766666666532 3344555566666666666555555555544
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=1.8e+02 Score=26.93 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 342 ILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
.++..+.+.|.+.+|+.+...+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4667778888888888777666543
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.00 E-value=1.9e+02 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 290 (673)
.+|.++|.-+.++. --..+-..++..+-...+...|...+.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 56667776666542 223344445555555555555555443
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.79 E-value=3.4e+02 Score=29.92 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=120.7
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh
Q 005856 311 VQCKSGHLNAAADVLKAMIRLSIPTEAG-------HYGILI-ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382 (673)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (673)
......++++|..++.++...-..|+.. .++.+- ......|+++.|.++.+.....- +.....+....
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L----~~~~~~~r~~~ 499 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL----PEAAYRSRIVA 499 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----ccccchhhhhh
Confidence 3445678888888888776542232222 122221 23345688999999988887654 44455566667
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHH--HHHHHhcCChh--HHHHHHHHHHhC---CCC---CC
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNL--IRGHSKEGNPD--SAFEIVKIMGRR---GVP---RD 448 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~~~~~---~~~---~~ 448 (673)
+..+..+..-.|++++|..+.++..+.. ...-..|..+ ...+..+|... +....+...... ..+ +-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 7777888888999999998888776653 2222233333 23345566322 222233322211 011 12
Q ss_pred HHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhh--HHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CCHHH
Q 005856 449 ADAYICLIESYLRK-GEPADAKTALDSMIEDGHSPASSL--FRSVMESLFEDGRVQTASRVMKSMVEKGVK----ENLDL 521 (673)
Q Consensus 449 ~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 521 (673)
..++..+..++.+. +...++..-+.-.......|-... +..++......|+.+.|...+.++...... ++...
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 23344444444441 112222222222222121121111 225566777899999999999888776222 22222
Q ss_pred HHHHHHHH--HcCCCHHHHHHHHHH
Q 005856 522 VAKILEAL--LMRGHVEEALGRIDL 544 (673)
Q Consensus 522 ~~~l~~~~--~~~g~~~~A~~~~~~ 544 (673)
-...+... ...|+..+|.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222 356777777655444
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.67 E-value=3.2e+02 Score=29.46 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=67.9
Q ss_pred HHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----------hHHHHHHHHHhcCCh
Q 005856 400 EIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD----------AYICLIESYLRKGEP 465 (673)
Q Consensus 400 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~ 465 (673)
...+.+|...- ...+.+...++-.|....+++...++.+.+... ||.. .|...++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 34555665543 345667777888888888999999988888764 3321 222223333355777
Q ss_pred HHHHHHHHHHHHc--CCCCchhhHHH-------HHHHHhccCCHHHHHHHHHHHHHc
Q 005856 466 ADAKTALDSMIED--GHSPASSLFRS-------VMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 466 ~~A~~~~~~~~~~--~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
++|+...-.+.+. .+.||...... +-..|...+..+.|.++|++..+.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 8888877777644 34555432211 112344566778888999888765
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.53 E-value=1.2e+02 Score=24.39 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 005856 398 KAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (673)
Q Consensus 398 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 439 (673)
.+.++|+.|...+ ...+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5556666665554 44455555666666666666666666543
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.05 E-value=1e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005856 114 FDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (673)
Q Consensus 114 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (673)
++.+..-++-|++......++++.+.+++..|.++|+-+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333333344444444444445555555555555554444
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.93 E-value=83 Score=27.52 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..|+...|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666677777777666666665
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.90 E-value=94 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=30.0
Q ss_pred HhcCCHHHHHHHHHHHHHchhccCCCCCCCC----chhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDM----EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
.+.|++..|.+.+.+..+... ...... -....-.+.......|++++|...+++.++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~----~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAK----QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHh----hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777777766666654431 111111 11122223344555677777776666665543
No 420
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.55 E-value=74 Score=29.26 Aligned_cols=54 Identities=9% Similarity=-0.038 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQADI 642 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (673)
...++..|.+.|++++|.++++.+...=. .........+..|+...|+.+....
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34678888889999999999888854211 1223444457888888888888744
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.87 E-value=2.5e+02 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=8.8
Q ss_pred ccCChHHHHHHHHHHh
Q 005856 563 EKGKTIAAVKLLDFCL 578 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~ 578 (673)
..|++++|...+-+++
T Consensus 258 ~~~ry~da~~r~yR~~ 273 (380)
T TIGR02710 258 TQGRYDDAAARLYRAL 273 (380)
T ss_pred HccCHHHHHHHHHHHH
Confidence 4667766665443333
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.73 E-value=2.2e+02 Score=27.03 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHHh
Q 005856 173 LSLKLETAIRFFEDMKS 189 (673)
Q Consensus 173 ~~~~~~~a~~~~~~~~~ 189 (673)
+.|+..+|.+.|.++.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 34555555555544443
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.61 E-value=3.7e+02 Score=29.67 Aligned_cols=55 Identities=5% Similarity=0.030 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 005856 566 KTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 620 (673)
..+.+.++..+....+..|. .-+....+..+.+.+++..|..+-.++++.+..++
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 34444333333333333332 22234555666777777777777777776654433
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.24 E-value=1.7e+02 Score=28.81 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHc--CCCHHHHHHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENL----DLVAKILEALLM--RGHVEEALGRIDL 544 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~--~g~~~~A~~~~~~ 544 (673)
.+...+++..|.++|+++.+..+.+.. ..|..+..+|.. .-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 344556666666666666655433322 223344444433 3356666666654
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.21 E-value=78 Score=21.45 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 005856 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-----LSLKLETAIRF 183 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~ 183 (673)
+...|++=+|-++++.+-.....+....+..+|...+ +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456777777777777654322334445555555432 44666555544
No 426
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.74 E-value=57 Score=24.39 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
-.+.++++-..+....+....+|+-.|...|+.+.|.+.|+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344555555555444555566777777777877777777764
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.57 E-value=35 Score=23.12 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=21.7
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 585 DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 585 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
|....-.++.+|...|++++|.++++++...
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444456778888888888888888877653
No 428
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.49 E-value=1e+02 Score=29.30 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHH-----HHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDSLLSV-----LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
..|..=..-|.+.+++..|...|.+-++ .--.|+.+..+.. -...|++..|+.=..+++..+|.. ...|..=+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhh
Confidence 3445556677788889999988886665 3345664432221 124688888888888888876543 33444567
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 005856 594 DALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.+++...++++|..+++..+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 7888888999999998887654
No 429
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=49.11 E-value=46 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+|..|++.-...+++++|.+=|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3577888888999999999998888775
No 430
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.40 E-value=40 Score=33.58 Aligned_cols=104 Identities=8% Similarity=-0.105 Sum_probs=60.5
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
+.....+.++.|..++..+++.+ |..+..|..-..++.+.+++..|+.=+...++..+. ....|..-..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 34455667778888888877765 455555555556777777777777666666665421 222333333344445556
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
.+|+..|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 666666666555 345555555554443
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.05 E-value=68 Score=28.09 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 88 QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120 (673)
Q Consensus 88 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 120 (673)
.|++.++..++..+...|+.++|..+..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777777777777777777777777777663
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.24 E-value=93 Score=25.71 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 005856 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (673)
.+.+.|++++..-. .++..+...++.-.|..+++.+.+.++..+..+....+..+...|
T Consensus 11 ~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444554443322 344445555555666666666666655555555544555555555
No 433
>PRK10941 hypothetical protein; Provisional
Probab=47.01 E-value=2.5e+02 Score=26.28 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
+.+-.+|.+.++++.|..+.+.+....|.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 444555666777777777777777766666666666666677777777777666666543
No 434
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.27 E-value=4.3e+02 Score=28.91 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=97.3
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
...|..+++.+-..|++-....+++++......+...|.......-. .+-.+.+..++-...+. .+....+|....-+
T Consensus 312 ~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallA 390 (881)
T KOG0128|consen 312 DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHH
Confidence 34577778888888888888778887776654444443322211111 11222222333222222 22233344433334
Q ss_pred HHhcCChH-HHHHHHHHHHHcCC---------------CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005856 459 YLRKGEPA-DAKTALDSMIEDGH---------------SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLV 522 (673)
Q Consensus 459 ~~~~~~~~-~A~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 522 (673)
+.+.+... .....|...+..++ ..+...+..+- ..+..|...|....+....+.....
T Consensus 391 leR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~ 464 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVL 464 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 44433222 22222222222211 11111111111 1234455555544443333334444
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHccCChHHHHHHHHHHhcCCCCCC
Q 005856 523 AKILEALL-MRGHVEEALGRIDLMMQSGSVP---NFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 523 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (673)
...+.... ..++.+.+..+++.+...|..- .|...+..-...|+...+..++.++......|+
T Consensus 465 q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 465 QLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 44444444 4568999999998777643221 133344444467999999999888888755553
No 435
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.43 E-value=46 Score=22.66 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=20.4
Q ss_pred CChHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCCH
Q 005856 21 FDHNLVYNVLHGAK-NSEHALQFFRWVERAGLFNHDR 56 (673)
Q Consensus 21 ~~~~~~~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~ 56 (673)
+........|...+ |++.|+..|..+...+.+|++.
T Consensus 25 mn~~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 25 MNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 34444444555554 6777777777766555455443
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.16 E-value=2.9e+02 Score=26.52 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFE------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
++++..++++....+. |........|.++.. .-+|.....+|+.+....+.|-+.....+ +.....-++.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV--Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV--ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH--HHHHhhhHHhH
Confidence 4566666766666553 666666555555432 23566666667666666555433332222 22333335555
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 539 LGRIDLMMQS----GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 539 ~~~~~~~~~~----~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
+...+.+... |+.|-+..-.+.+.+.|+.++|..-|++++..-
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 6655555442 233333444555566666666666666666553
No 437
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.86 E-value=81 Score=29.93 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 005856 456 IESYLRKGEPADAKTALDSMIEDGH-SP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR 532 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (673)
.+-|.+..++..|...|.+.++..- .| +.+.|+.-..+-...|++..|+.=....+..++. ....|..-+.++...
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Confidence 3345555555555555555543211 11 1223333333333445555555555554444333 233333334444444
Q ss_pred CCHHHHHHHHHHH
Q 005856 533 GHVEEALGRIDLM 545 (673)
Q Consensus 533 g~~~~A~~~~~~~ 545 (673)
.++++|+...++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 4455555444433
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.67 E-value=60 Score=21.96 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 235 TTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
-.+|.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555543
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.88 E-value=26 Score=27.97 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=20.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG 170 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (673)
..|.-..|-.+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345666677777777777777664 5565544
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.69 E-value=54 Score=17.77 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005856 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIE 64 (673)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (673)
|+.+.|..+|+.+.... +.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHHH
Confidence 34566667777766654 455556555544
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.44 E-value=1.3e+02 Score=24.82 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHhCCCCCC--HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 005856 544 LMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (673)
Q Consensus 544 ~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 601 (673)
.+.+.|+++. -..++..+.+.+..-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 11 ~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555444 334666666665557777777766666666554443344555555553
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.30 E-value=1.4e+02 Score=22.00 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
.|+.+.|.+++..+. +| ...|..++.++..+|..
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 345555555555554 32 23344444444444443
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.14 E-value=3.1e+02 Score=25.98 Aligned_cols=71 Identities=10% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc----------cCCHHHH
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----------DGRVQTA 503 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 503 (673)
.++|+.+.+.++.|.-.++..+.-.+.+.=...+.+.+|+.+.. |..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777787888888888877777777777777888888888764 22335566666553 4555555
Q ss_pred HHHHHH
Q 005856 504 SRVMKS 509 (673)
Q Consensus 504 ~~~~~~ 509 (673)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 554443
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=2.9e+02 Score=25.76 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCH----HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHH
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQ----SGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYE 590 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (673)
...+..++..|++.++.+.+.+...+... .|.+-|. ..++..|....-.++-++..+-+++.|...+...-.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34555666666666666666655544332 2334331 123333434444455555555555555444321111
Q ss_pred H--HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 591 K--VLDALLAAGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 591 ~--l~~~l~~~g~~~~A~~~~~~~~~~~~~ 618 (673)
. .+--+....++.+|..++..++..-.+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 1 112222345666666666666654333
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=1.4e+02 Score=32.49 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=70.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (673)
+..+|+.+.|++.-..+ .+..+|..|.......|+.+-|+..|++... |+.|-..|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 45667777777666554 4556777787777778888777777776533 34444455666776665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.++.+-.. .+-|.........-.|+.++=.++++.+=. .+-.|. .-...|.-++|.++.++.-.
T Consensus 718 ~Km~~iae---~r~D~~~~~qnalYl~dv~ervkIl~n~g~-----~~layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAE---IRNDATGQFQNALYLGDVKERVKILENGGQ-----LPLAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHH---hhhhhHHHHHHHHHhccHHHHHHHHHhcCc-----ccHHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 55544332 222222222222235666666666652211 122221 11235666777777666554
No 446
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.43 E-value=6e+02 Score=29.12 Aligned_cols=112 Identities=12% Similarity=0.168 Sum_probs=54.6
Q ss_pred HHhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005856 449 ADAYICLIESYLRKG--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (673)
......++.+|.+.+ ++++|+..+.++.+. +.......+.-++- ...+.++|+.++.. - |... .++
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~--Y-Dl~L--al~ 879 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT--Y-DLEL--ALM 879 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh--c-CHHH--HHH
Confidence 344556677777777 777888888777754 11221122221111 12334444544433 0 1221 233
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHH
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLD 575 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~ 575 (673)
-+-..+.+++|=+-+++++.+ ..|.+ .-..+=.+.++++.|+..+.
T Consensus 880 VAq~SQkDPKEYLPfL~~L~~--l~~~~-rry~ID~hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 880 VAQQSQKDPKEYLPFLQELQK--LPPLY-RRYKIDDHLKRYEKALRHLS 925 (928)
T ss_pred HHHHhccChHHHHHHHHHHHh--CChhh-eeeeHhhhhCCHHHHHHHHH
Confidence 344455677777777776666 33332 11111123566666666554
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.28 E-value=92 Score=19.71 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=15.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005856 243 AVERADDALRIFDEMKSFDVKPNAVTYTALL 273 (673)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 273 (673)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555554444443
No 448
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.76 E-value=1.3e+02 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=8.0
Q ss_pred cCChHHHHHHHHHHH
Q 005856 599 AGKTLNAYSILFKIM 613 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~ 613 (673)
.|++++|+..|.+.+
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (75)
T cd02678 19 AGNYEEALRLYQHAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555555544
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.62 E-value=5.7e+02 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccC
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKK 85 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (673)
-|..++..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4666777777777777777777777663
No 450
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.53 E-value=4.5e+02 Score=27.45 Aligned_cols=160 Identities=10% Similarity=0.036 Sum_probs=98.2
Q ss_pred ccCCHhHHHHHHHHHHHcC------------CCCHHhHHHHHHHHHhcCChhHHHHHHHH-------HHhCCCCC-----
Q 005856 392 HNGQTGKAEIFFRQLMKKG------------VLDPVAFNNLIRGHSKEGNPDSAFEIVKI-------MGRRGVPR----- 447 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~~~~~----- 447 (673)
....++++...|....... |....+...+..++..+|+.+.|..+.++ +....+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456667777777665543 23444566667778888887776665544 33322222
Q ss_pred --------CHHhHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHh-ccCCHHHHHHHHHHHHHc--
Q 005856 448 --------DADAYIC---LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF-EDGRVQTASRVMKSMVEK-- 513 (673)
Q Consensus 448 --------~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-- 513 (673)
|...|.+ .+..+.+.|-+..|.++-+.+.+....-|+.....+|+.|+ +..+++-.+++++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2223333 24456678889999988888877554445666667777664 567788888887776433
Q ss_pred -CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCC
Q 005856 514 -GVKENLDLVAKILEALLMRGH---VEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 514 -~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~ 553 (673)
..-||...-.+++..|.+... -+.|...+.++.. ..|.
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~--~~P~ 451 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK--HHPL 451 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--hCcH
Confidence 344566555566666666554 4556666666665 4454
No 451
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=2.9e+02 Score=25.19 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH---------hCCCCCC-----------HHHHHHHHHccCChHHHHHHHHHHh
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMM---------QSGSVPN-----------FDSLLSVLSEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~p~-----------~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (673)
+.+...-..-+.+.|++.+|..-|.+.+ +.+..|. +..+...+...|++-++++.-...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred cCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 579 GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKL 627 (673)
Q Consensus 579 ~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 627 (673)
...+. +...|..-+.+....=+.++|..=+.++++.........-..|
T Consensus 258 ~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 258 RHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred hcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
No 452
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.33 E-value=2.8e+02 Score=25.05 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP 229 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (673)
|.......++..|. .+++++|.+++.++-+.|..|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 34444444443332 344555555555555555443
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.30 E-value=1.8e+02 Score=22.91 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 005856 591 KVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
.-+.++-..|+.++|++.|+..-
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHH
Confidence 34555666777777777776643
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.16 E-value=3.1e+02 Score=25.48 Aligned_cols=26 Identities=31% Similarity=0.111 Sum_probs=15.9
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIV 437 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 437 (673)
.++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 46666777777777777777766554
No 455
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.53 E-value=52 Score=23.66 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=11.1
Q ss_pred HhcCCcchHHHHHHHHHhhhc
Q 005856 632 NQEGNTKQADILSRMIRGEMS 652 (673)
Q Consensus 632 ~~~g~~~~a~~~~~~~~~~~~ 652 (673)
.....|+.|..+..+|.+..+
T Consensus 50 ~~~~~w~~ar~~~~Km~~~~~ 70 (79)
T cd02679 50 GVGSQWERARRLQQKMKTNLN 70 (79)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 334446666555555554443
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.27 E-value=62 Score=30.27 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSFDVK 263 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (673)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345666666666666666666666665543
No 457
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.05 E-value=2.6e+02 Score=24.20 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCccCHhhHH----HHHHHHHHcCC----------------HHHHHHHH
Q 005856 92 DMFEVLIESY--GKKGIVQESVKIFDIMKQLGVERSVKSYD----ALFKLILRRGR----------------YMMAKRYF 149 (673)
Q Consensus 92 ~~~~~li~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~----------------~~~A~~~~ 149 (673)
..+..+..++ .+..++.+-..+++.+... +....++. .+++.+.+-.+ .+.|+.+|
T Consensus 15 fyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~--~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~ 92 (200)
T cd00280 15 FYFHSACRAFREGRYEDFRRTRDIAEALLVG--PLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVL 92 (200)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHhc--cccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHH
Q ss_pred HHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 150 NKMLSEGIEP-------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 150 ~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
+.+.+.-..| ....-...+..|.+.|.+++|.++++.... .|+......-+....+..+
T Consensus 93 ~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 93 ESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 458
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.74 E-value=90 Score=27.88 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=30.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (673)
.+.++.+.+.+++.+..+. .+-....|-.+...-.+.|+++.|.+.+++..+.++
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4455666666666665542 112234455555555566666666666666665543
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.66 E-value=68 Score=30.01 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 487 (673)
|+..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345555555666666666666666655554444443
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.50 E-value=3.8e+02 Score=25.50 Aligned_cols=150 Identities=11% Similarity=0.060 Sum_probs=75.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcC
Q 005856 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (673)
Q Consensus 26 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 105 (673)
+....-+.+++.+-++.-..+++.+ +.-..+|..+..- ..--..+|..+|++.++.+ ..+|+.- ..+...|
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN--~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~ 260 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEIN--NECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQS 260 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcC--chhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhc
Confidence 3444455666666666666666655 3444455444332 2233567777777766642 2222211 1111122
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSY--DALFKLILRRGRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIR 182 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 182 (673)
. ..+.+.+++ .++.+| ..|.-.-.+.|+..+|.+.|+.+.+.-.-.+ ......++.++....-+..+..
T Consensus 261 ~------~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 261 P------QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred c------chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333332 333333 2333334456888888888887765411111 1123456777777666666666
Q ss_pred HHHHHHhCCC
Q 005856 183 FFEDMKSRGI 192 (673)
Q Consensus 183 ~~~~~~~~~~ 192 (673)
++.+.-+...
T Consensus 333 vLakYDdisl 342 (556)
T KOG3807|consen 333 VLAKYDDISL 342 (556)
T ss_pred HHHhhccccC
Confidence 6666555433
No 461
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.26 E-value=3.8e+02 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=16.4
Q ss_pred cchHHHHHHhccCCCCChHHHHHHHhcC
Q 005856 6 WTTRLQNKIRALVPQFDHNLVYNVLHGA 33 (673)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 33 (673)
-.+++++......-.++.-.++++|.+.
T Consensus 171 n~deie~l~si~sn~wniy~iLnil~sl 198 (525)
T KOG3677|consen 171 NKDEIENLQSIFSNNWNIYWILNILHSL 198 (525)
T ss_pred CHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 3455666555555466666677766543
No 462
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.07 E-value=2.9e+02 Score=24.02 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 488 RSVMESLFEDGRVQTASRVMKSMVEKGV--------------KENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
.+++-.|.+.-+|.++.++++.+.+..+ .+.-...+..+..+.+.|..|.|+.+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3556667788888888888888776422 1233444566666777777777777766
No 463
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.71 E-value=3.6e+02 Score=24.94 Aligned_cols=130 Identities=8% Similarity=-0.001 Sum_probs=81.0
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChH-HH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA-DA 468 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A 468 (673)
.+......|+.+...++..++.+..+|.---..+... .++.+-++.++++.+.+.+ |-..|..-=......|++. .=
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccch
Confidence 4556677888888888888766666654433333222 3466667777777765433 5555554333344455665 66
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
+++.+.|+.. -.-+-..|..---.+..-++++.-+.+..++++.++. |-..|+
T Consensus 133 Lef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN 185 (318)
T KOG0530|consen 133 LEFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWN 185 (318)
T ss_pred HHHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhh
Confidence 7777777762 2345566666566666667788888888888888665 333344
No 464
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.68 E-value=1.6e+02 Score=22.81 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 96 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
.++..+.+|...++|+++++.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35666778888888888888888877 45555444444333
No 465
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.48 E-value=3.4e+02 Score=26.85 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005856 454 CLIESYLRKGEPADAKTALDSMIED--GHSPASSLFRSVMESLFEDGRVQTASRVMKSMV 511 (673)
Q Consensus 454 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (673)
.|++...-.|++....+.++.|.+. |..|....-..+.-+|.-.|++.+|.+.|-.++
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444444444321 112221111233444555555555555555443
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.21 E-value=1.8e+02 Score=24.83 Aligned_cols=33 Identities=9% Similarity=-0.202 Sum_probs=13.4
Q ss_pred CChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 70 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
+..-.|.++++.+.+.+...+..+....+..+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 334444444444444443333333333333333
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.55 E-value=3.4e+02 Score=24.37 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 005856 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SS--LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL 519 (673)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 519 (673)
+.+...-++.|+--|.-...+.+|...|..- .|+.|+ .. .-..-+......|+.++|++....+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 3455555666666666555566665555432 344442 22 2234455667788888888887776544333343
Q ss_pred HHHHHHH----HHHHcCCCHHHHHHHHHHH
Q 005856 520 DLVAKIL----EALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 520 ~~~~~l~----~~~~~~g~~~~A~~~~~~~ 545 (673)
..+..+. --+.+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3322221 1245677777777776643
No 468
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.47 E-value=2.5e+02 Score=26.49 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------cCCCHHHH
Q 005856 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC----------DAGKMVEV 285 (673)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~a 285 (673)
.++++.+.+.++.|.-.+|.-+.-.+.+.=...+++.+++.+.. |..-|..++..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888888888888777778888888899999988875 3333666665555 35888888
Q ss_pred HHHHHH
Q 005856 286 QKVLRE 291 (673)
Q Consensus 286 ~~~~~~ 291 (673)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 469
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.21 E-value=1.1e+02 Score=21.06 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHH
Q 005856 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR 138 (673)
Q Consensus 89 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 138 (673)
|....++.++..++...-.+++...+++..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566666666666666777777777766663 555566555555554
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.20 E-value=1.5e+02 Score=20.35 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (673)
Q Consensus 229 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (673)
|....++.++..++...-.++++..+.+....|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3445556666666666666666666666665552 34444444444433
No 471
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.88 E-value=3.6e+02 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=15.4
Q ss_pred ccCChHHHHHHHHHHhcCCCCCC
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~ 585 (673)
..++...|..+++++...+++..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 34566778888887777765543
No 472
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.88 E-value=48 Score=26.59 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 005856 536 EEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~ 553 (673)
.+|..+|++|++.|..|+
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344444444444444444
No 473
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.80 E-value=4.4e+02 Score=25.56 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 005856 536 EEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 597 (673)
++.+.+++.+++ ..|+ |.-++..+...|.+++.+.+|++|+..|-.|-.+.-..+++++-
T Consensus 120 eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455555555555 4444 11233334456666677777777777666655444444555544
No 474
>PRK12798 chemotaxis protein; Reviewed
Probab=33.60 E-value=5e+02 Score=25.95 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=98.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCch----hhHHHHHHHHhccCCHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL-RKGEPADAKTALDSMIEDGHSPAS----SLFRSVMESLFEDGRVQ 501 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 501 (673)
.|+..++.+.+..+.....++....|-.|+.+-. -..++..|+++|+...-. .|-. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4778888888887776666677777777776544 445778888888877632 2432 23333344556778888
Q ss_pred HHHHHHHHHHHc-CCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHH
Q 005856 502 TASRVMKSMVEK-GVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 502 ~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~ 574 (673)
++..+-.....+ ...|=.. .+..+...+.+.++-..- +.+..++.. +.|+ +..+...-.-.|+.+-|...-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 877776666655 2222222 223333444444322211 123333332 3333 122222333478888888777
Q ss_pred HHHhcCCCCCC--hHh-HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 575 DFCLGRDCIID--LAS-YEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 575 ~~~~~~~~~~~--~~~-~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+++.......+ ... ...-+-+-.-..++++|.+.+.++-...
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 77776542211 111 1011112223556777777766655443
No 475
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=33.13 E-value=7.8e+02 Score=28.08 Aligned_cols=47 Identities=13% Similarity=0.009 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
+++|+.-|+.+... +.-+--|---.-.|.+.|++++-++.+..++++
T Consensus 535 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 535 FTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45555555555432 111112222233455666666666666555543
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.97 E-value=4.1e+02 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
++.....++..|.+.|++.+|...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666677788888888888877664
No 477
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.88 E-value=6e+02 Score=29.65 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=87.5
Q ss_pred HccCCHhHHHH------HHHHHHHc-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH-------hCCCCCCHHhHHHHH
Q 005856 391 CHNGQTGKAEI------FFRQLMKK-GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG-------RRGVPRDADAYICLI 456 (673)
Q Consensus 391 ~~~~~~~~a~~------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~ 456 (673)
...|.+..+.+ ++...... .+.....|..+...+-+.|+.++|...-.... ..+.+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455555555 55533333 25667778888888889999988887655432 112222334555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-----C-CCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCC--CCHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIED-----G-HSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK--ENLDLV 522 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--~~~~~~ 522 (673)
......++...|+..+.+.... | ..|. ..+++.+-..+...++++.|.++++.+... |.+ .+..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5555666777777766665532 2 1233 333343333344457888888888887764 221 134455
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~ 543 (673)
..+.+.+...+++..|+...+
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHh
Confidence 566666666666666655433
No 478
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.17 E-value=4.4e+02 Score=24.92 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHH
Q 005856 328 MIRLSIPTEAGHYGILIENFCKAEM-YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (673)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (673)
+...|.+|.......+-..+.+.|- ..-|.++|... ......+.++.++.+.+--+.-.++|
T Consensus 157 ~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~--------------~~Ek~i~~lis~Lrkg~md~rLmeff--- 219 (412)
T KOG2297|consen 157 LLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEW--------------LVEKDINDLISSLRKGKMDDRLMEFF--- 219 (412)
T ss_pred HHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHH--------------HhhccHHHHHHHHHhcChHhHHHHhc---
Q ss_pred HHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhh
Q 005856 407 MKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
||+..+-......+...|--+-..-.-.++..- .....-..|..-..+...+++.....++-.+..--|+...
T Consensus 220 ----Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eV 292 (412)
T KOG2297|consen 220 ----PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEV 292 (412)
T ss_pred ----CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceE
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
...+-.+....+.|..-.++...-.-+ ....|.-++.+++..|+-+-++
T Consensus 293 i~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 293 IGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred EeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.65 E-value=1.1e+02 Score=27.46 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
...+.++.+.+.+++.++.+.-+. ....|..+...-.+.|+++.|.+.|++.++ +.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcc
Confidence 345678899999999998887544 566777888888889999999999998888 5555
No 480
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.54 E-value=5.5e+02 Score=25.80 Aligned_cols=234 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 005856 40 LQFFRWVERAGLFNHDRET--HLKMIEILGRVGKLNHARCILLDMPKKGVQWDED--MFEVLIESYGKKGIVQESVKIFD 115 (673)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 115 (673)
.++.+.+.+.+ ..++... -...+...+..|+.+ +.+.+.+.|..++.. .....+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDIG-INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Q ss_pred HHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005856 116 IMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN--VMLWGFFLSLKLETAIRFFEDMKSRGIS 193 (673)
Q Consensus 116 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 193 (673)
.-.......+..-.+.+..+..... .++++.+.+.|..|+..... ..+...+..|+.+.+..+++.-......
T Consensus 90 ~~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~ 164 (413)
T PHA02875 90 LGKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164 (413)
T ss_pred cCCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 005856 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT---TMIKGYVAVERADDALRIFDEMKSFDVKPNAV--- 267 (673)
Q Consensus 194 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 267 (673)
|..-.+.+..+..... .++.+.+.+.|..++..... +++...+..|+. ++.+.+.+.|..++..
T Consensus 165 -d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~~~~~ 234 (413)
T PHA02875 165 -DCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNIMFMI 234 (413)
T ss_pred -CCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcchHhhc
Q ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 268 -----TYTALLPGLCDAGKMVEVQKVLREMV 293 (673)
Q Consensus 268 -----~~~~ll~~~~~~~~~~~a~~~~~~~~ 293 (673)
|...++..++.....+....+.....
T Consensus 235 ~~~~~t~l~~~~~~~~~~~~~~~~~li~~i~ 265 (413)
T PHA02875 235 EGEECTILDMICNMCTNLESEAIDALIADIA 265 (413)
T ss_pred CCCchHHHHHHHhhcCCcccHHHHHHHHHHH
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.53 E-value=3e+02 Score=29.12 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHcCC---CCHHhHHHHHHHHHhcCChh------HHHHHHHHHHhCCCCCCHHhHHH
Q 005856 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPD------SAFEIVKIMGRRGVPRDADAYIC 454 (673)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~ 454 (673)
.+++.+|...|++..+..+++.+..... .-...+|..++.+.+.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 3789999999999999999999988763 23456888888888888764 3444444444 3346677766
Q ss_pred HHHHH
Q 005856 455 LIESY 459 (673)
Q Consensus 455 l~~~~ 459 (673)
++++-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 66543
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.37 E-value=2.5e+02 Score=25.80 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005856 342 ILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
.+..-|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666667777777777666
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.24 E-value=1.3e+02 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=6.4
Q ss_pred ccCChHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDF 576 (673)
Q Consensus 563 ~~g~~~~A~~~~~~ 576 (673)
..|++++|+.++..
T Consensus 17 ~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 17 EAGNYEEALELYKE 30 (69)
T ss_dssp HTTSHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 34444444444443
No 484
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=31.19 E-value=1.8e+02 Score=23.49 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCccchHHHHHHhccCCCCChHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHh
Q 005856 3 ERAWTTRLQNKIRALVPQFDHNLVYN--VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILL 80 (673)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 80 (673)
.+.|.+=++..+.+-....+.....- -+...|+++.|+++.+.+.+.+ -+.+..|..-.-++. .++......
T Consensus 29 LP~Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~--l~~P~~f~R~~~t~v----aeev~~~a~ 102 (132)
T PF05944_consen 29 LPKYLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHG--LPMPDRFKRTLPTFV----AEEVADWAL 102 (132)
T ss_pred HHhHHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcC--CCccccccCcchHHH----HHHHHHHHH
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 81 DMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (673)
Q Consensus 81 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 110 (673)
...+.|.+.++.....+...-....-.+++
T Consensus 103 ~~~~~g~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 103 RAAKAGQSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred HHHHcCCCCChHHHHHHHHHHccCCCCCCC
No 485
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.12 E-value=1.1e+02 Score=17.50 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH
Q 005856 142 YMMAKRYFNKMLSEGIEPTRHTY 164 (673)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~ 164 (673)
++.|..+|++.+.. .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 44555555555442 3444444
No 486
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.05 E-value=5.3e+02 Score=25.47 Aligned_cols=213 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCccchHHHHHHhccCCCCChHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHh--------cC
Q 005856 3 ERAWTTRLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERA----GLFNHDRETHLKMIEILGR--------VG 70 (673)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~--------~g 70 (673)
..+..+.+.++.+....+.....-++-+...=+.++..++++++.+. . +.+.......+.++.- .-
T Consensus 65 ~~~~~~~l~~Y~~~f~~K~cCf~DL~~Y~~~L~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~in~~kl~r~~~~~~~~ 142 (365)
T PF09797_consen 65 EEDLLELLEEYFDKFGSKPCCFDDLKPYLESLDPEERKELLEKLLEKIEADS--KEDIKQLIRHINALKLSRFLGLHFSL 142 (365)
T ss_pred chhHHHHHHHHHHHhCCCCEeHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc--CCCHHHHHHHHHHHHHHHHhcccccC
Q ss_pred ChHHHHHHHhhccc-------------CCCCCCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCCccCHhhHH
Q 005856 71 KLNHARCILLDMPK-------------KGVQWDEDMFEVLIESYGK-------KGIVQESVKIFDIMKQLGVERSVKSYD 130 (673)
Q Consensus 71 ~~~~a~~~~~~~~~-------------~~~~~~~~~~~~li~~~~~-------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 130 (673)
..+....+..++.+ .+..|........+..+.. ...+-.|..+++...... +.+...--
T Consensus 143 ~~~~~~~~~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~L 221 (365)
T PF09797_consen 143 SSESLLDLAQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKL 221 (365)
T ss_pred ChhhHHHHHHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005856 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAI-RFFEDMKSRGISLDVVTYNTMINGYNRF 209 (673)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (673)
.++..|...|-...|...|..+.-..++-|...| .+..-+...|....+. ..++..... ..-+.......+....+.
T Consensus 222 lLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~~r~~~~~~~~~~~~~~~~~~~~f-y~~~~~~~~e~i~~af~~ 299 (365)
T PF09797_consen 222 LLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH-LILDRLSTLGPFKSAPENLLENALKF-YDNSEKETPEFIIKAFEN 299 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH-HHHHHHhccCcccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Q ss_pred CChHHHHHHHH
Q 005856 210 KKMDEAEKLFA 220 (673)
Q Consensus 210 ~~~~~a~~~~~ 220 (673)
|.+.+..++.+
T Consensus 300 gsysKi~ef~~ 310 (365)
T PF09797_consen 300 GSYSKIEEFIE 310 (365)
T ss_pred CCchhHHHHHH
No 487
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.85 E-value=5.5e+02 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT 160 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 160 (673)
..-.++.+.. .|+...|+.+++++...|..|.
T Consensus 260 ~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 260 VIIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3344455443 4889999999999988876654
No 488
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=30.84 E-value=3.1e+02 Score=22.68 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005856 199 YNTMINGYNRFKKMDEAEKLFAEMKEKN-----IEPTVISYTTMIKGYVAVER-ADDALRIFDEMKSFDVKPNAVTYTAL 272 (673)
Q Consensus 199 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (673)
.+.++......+++.....+++.+.... -..+...|+.++.+..+..- ---+..+|.-+++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555566666666665553210 01234456777777655444 23455667777766667777777777
Q ss_pred HHHHHcC
Q 005856 273 LPGLCDA 279 (673)
Q Consensus 273 l~~~~~~ 279 (673)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 489
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.48 E-value=1.8e+02 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=14.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
..|++=+|-++++.+-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 45556666666665554322233344444443
No 490
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.35 E-value=2.6e+02 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 455666666666666555555555555555555553
No 491
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.32 E-value=2.3e+02 Score=20.94 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 005856 401 IFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP 465 (673)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (673)
+++..+.+.+..+......+-.+-...|+.+.|.+++..+. .| +..|..++.++...|..
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 34444444443333333333322233455555555555555 32 12344445555544443
No 492
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.95 E-value=2e+02 Score=22.31 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=13.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcC
Q 005856 26 VYNVLHGAKNSEHALQFFRWVERAG 50 (673)
Q Consensus 26 ~~~~l~~~~~~~~A~~~~~~~~~~~ 50 (673)
++..|.++...++|+++.+++.+.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445555555555555555555554
No 493
>PRK09857 putative transposase; Provisional
Probab=29.81 E-value=3.9e+02 Score=25.39 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.++.-....|+.++..++++.+.+.. ........+++.-+.+.|.-++++++.++|...|..++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33333344455555555555554442 11233334455555555555555666666665555444
No 494
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.57 E-value=2.8e+02 Score=25.76 Aligned_cols=59 Identities=15% Similarity=-0.068 Sum_probs=45.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+-.++...++++.|....++.+..+|. ++..+..-+-+|.+.|.+.-|++-++..++..
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 344566788888888888888888755 55556677888888999999988888877664
No 495
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.31 E-value=7.9e+02 Score=26.91 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005856 168 LWGFFLSLKLETAIRFFEDMKSRGISL---DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV 244 (673)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 244 (673)
++.+.+.+.+++|+.+.+..... .| -...+..++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44555667777777766554433 22 2345666777777777787777777777654 566666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 005856 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (673)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (673)
++......+ +....-..++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 2222112345567777666655
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.87 E-value=3.3e+02 Score=22.48 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC
Q 005856 440 MGRRGVPRDADAYICLIESYLRK-GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (673)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (673)
+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445554432 22334444433 3466677777777766655566666666666655553
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.83 E-value=2.2e+02 Score=20.36 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=7.6
Q ss_pred cCChHHHHHHHHHHH
Q 005856 599 AGKTLNAYSILFKIM 613 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~ 613 (673)
.|++.+|+..|.+.+
T Consensus 19 ~g~y~eAl~~Y~~ai 33 (77)
T cd02683 19 EGRFQEALVCYQEGI 33 (77)
T ss_pred hccHHHHHHHHHHHH
Confidence 455555555555444
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.81 E-value=4.5e+02 Score=23.97 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 98 IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 98 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
+..+-..|+++++...+.++...+...+..-.+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334445555555555555555554444444444444444
No 499
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=6e+02 Score=25.29 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=62.3
Q ss_pred HHhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH--------HHHhcCChHHHHHHHHHHHHc-CCCC
Q 005856 414 PVAFNNLIRGH--SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE--------SYLRKGEPADAKTALDSMIED-GHSP 482 (673)
Q Consensus 414 ~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~A~~~~~~~~~~-~~~~ 482 (673)
..+|-.++..+ ..+.++++|..+-+.....-..-+..++..+.. .|-..|+...-..++...... .+..
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34444444333 334677777777665544212224445544322 223445554544444443321 1222
Q ss_pred c----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 483 A----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA-------KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 483 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
| ....+.+++.|...+.++.|..+..+.. -|+...-+ .+...-.-.+++..|.+.+-....
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 2 3345666666777777777766655542 22221111 222233344566777766665554
No 500
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.62 E-value=2.8e+02 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
|..++..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888889999999999999988855
Done!