Query 005856
Match_columns 673
No_of_seqs 697 out of 3858
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 09:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6E-44 345.1 43.3 502 104-631 66-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-39 1.1E-43 343.0 41.4 503 67-596 64-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.1E-27 2.1E-31 233.9 48.0 325 206-547 9-333 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-27 1.5E-31 234.9 46.4 380 27-426 6-385 (388)
5 4g26_A Pentatricopeptide repea 100.0 9.2E-29 3.1E-33 249.8 25.4 206 73-278 7-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.3E-28 2.1E-32 243.7 24.8 205 109-314 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.1E-23 3.7E-28 219.2 42.9 256 279-547 202-477 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.3E-23 8E-28 216.7 40.2 448 57-523 7-487 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1E-21 3.4E-26 200.5 42.2 317 195-553 25-361 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4E-27 212.7 35.6 434 128-616 27-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.5E-26 199.0 40.3 319 37-366 9-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.9E-22 2.4E-26 206.8 37.9 401 25-443 30-491 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 9.1E-17 3.1E-21 171.7 60.3 384 54-504 983-1375(1630)
14 3ieg_A DNAJ homolog subfamily 99.9 2.7E-19 9.1E-24 176.5 37.9 328 266-631 3-350 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.9E-23 171.9 37.6 334 90-458 2-349 (359)
16 1xi4_A Clathrin heavy chain; a 99.9 8.2E-16 2.8E-20 164.4 60.9 219 209-476 1089-1307(1630)
17 2ooe_A Cleavage stimulation fa 99.9 8.2E-18 2.8E-22 174.7 45.4 431 149-614 2-491 (530)
18 2xm6_A Protein corresponding t 99.9 2.3E-17 7.7E-22 169.5 48.0 352 230-616 38-433 (490)
19 2xm6_A Protein corresponding t 99.9 2.4E-17 8.2E-22 169.3 47.3 354 195-583 38-435 (490)
20 3hym_B Cell division cycle pro 99.9 1.3E-18 4.4E-23 169.3 32.9 291 334-638 19-322 (330)
21 2ooe_A Cleavage stimulation fa 99.9 3.1E-17 1.1E-21 170.3 44.0 424 43-513 2-492 (530)
22 3hym_B Cell division cycle pro 99.8 4.9E-18 1.7E-22 165.2 32.8 298 161-465 22-321 (330)
23 1fch_A Peroxisomal targeting s 99.8 1.6E-18 5.4E-23 171.6 26.7 288 347-645 35-354 (368)
24 1fch_A Peroxisomal targeting s 99.8 3.5E-18 1.2E-22 169.1 24.9 286 316-614 39-358 (368)
25 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.6E-21 161.9 37.0 384 195-616 50-460 (472)
26 4eqf_A PEX5-related protein; a 99.8 1.4E-17 4.8E-22 164.4 25.5 261 379-645 64-351 (365)
27 4eqf_A PEX5-related protein; a 99.8 3.3E-17 1.1E-21 161.7 24.6 261 337-611 65-352 (365)
28 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.3E-22 157.6 22.7 290 28-363 11-308 (449)
29 4g1t_A Interferon-induced prot 99.8 1.2E-15 4.1E-20 156.4 36.7 348 302-653 51-462 (472)
30 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4.1E-21 155.1 27.4 260 379-645 20-310 (327)
31 1b89_A Protein (clathrin heavy 99.8 4.6E-17 1.6E-21 156.0 22.7 400 138-623 15-421 (449)
32 3cv0_A Peroxisome targeting si 99.8 8.4E-17 2.9E-21 156.2 24.3 262 339-614 23-314 (327)
33 3mkr_A Coatomer subunit epsilo 99.7 4E-16 1.4E-20 147.2 25.3 191 380-581 65-265 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 5.9E-16 2E-20 146.0 26.1 249 207-478 10-264 (291)
35 3e4b_A ALGK; tetratricopeptide 99.7 3.3E-15 1.1E-19 150.7 23.8 345 203-581 10-388 (452)
36 2pl2_A Hypothetical conserved 99.7 8.7E-15 3E-19 131.8 20.6 188 449-643 5-207 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.7 7.7E-17 2.6E-21 167.0 7.8 113 162-274 128-244 (1134)
38 1ouv_A Conserved hypothetical 99.7 1.8E-13 6.3E-18 128.5 30.4 222 381-616 7-252 (273)
39 1ouv_A Conserved hypothetical 99.7 1.5E-13 5E-18 129.2 29.5 229 411-654 3-255 (273)
40 3u4t_A TPR repeat-containing p 99.7 3E-14 1E-18 134.0 24.7 244 382-630 5-264 (272)
41 3uq3_A Heat shock protein STI1 99.7 1.2E-14 4.2E-19 135.4 21.9 221 381-615 6-236 (258)
42 2pl2_A Hypothetical conserved 99.7 1.6E-14 5.6E-19 130.0 21.7 198 335-545 3-211 (217)
43 4e6h_A MRNA 3'-END-processing 99.6 1.9E-11 6.7E-16 127.1 46.8 450 142-618 48-573 (679)
44 3e4b_A ALGK; tetratricopeptide 99.6 2.3E-14 8E-19 144.5 24.3 278 24-329 7-314 (452)
45 2h6f_A Protein farnesyltransfe 99.6 7E-14 2.4E-18 136.2 25.4 245 380-632 97-364 (382)
46 3spa_A Mtrpol, DNA-directed RN 99.6 4.9E-16 1.7E-20 161.1 10.5 112 93-204 129-244 (1134)
47 3uq3_A Heat shock protein STI1 99.6 8.6E-14 2.9E-18 129.6 24.2 225 56-294 5-235 (258)
48 3u4t_A TPR repeat-containing p 99.6 2.8E-13 9.6E-18 127.3 24.8 241 303-554 4-254 (272)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 132.9 18.7 130 381-513 44-173 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.4E-14 2.5E-18 131.5 20.0 247 313-574 16-269 (275)
51 4e6h_A MRNA 3'-END-processing 99.6 4E-11 1.4E-15 124.8 41.9 453 35-516 47-573 (679)
52 2h6f_A Protein farnesyltransfe 99.6 5.5E-13 1.9E-17 129.9 25.3 221 29-257 106-344 (382)
53 2vq2_A PILW, putative fimbrial 99.6 1E-12 3.6E-17 119.3 25.1 202 413-649 7-210 (225)
54 3sf4_A G-protein-signaling mod 99.6 6.8E-14 2.3E-18 140.2 17.5 302 301-640 8-366 (406)
55 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-12 4.5E-17 121.1 24.8 197 415-616 38-239 (252)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-13 1.2E-17 124.2 20.8 196 415-616 24-223 (243)
57 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-12 7.2E-17 119.7 26.0 200 56-259 37-237 (252)
58 2vq2_A PILW, putative fimbrial 99.6 1.9E-12 6.5E-17 117.6 25.0 201 55-258 7-209 (225)
59 2q7f_A YRRB protein; TPR, prot 99.5 2.6E-13 8.9E-18 125.1 19.3 201 378-583 21-225 (243)
60 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.6E-18 139.1 17.5 271 381-651 49-373 (411)
61 3sf4_A G-protein-signaling mod 99.5 2.3E-13 7.9E-18 136.3 19.3 304 263-605 6-366 (406)
62 4a1s_A PINS, partner of inscut 99.5 1.8E-13 6.1E-18 137.4 16.5 234 383-616 89-373 (411)
63 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.2E-16 117.4 28.1 215 397-616 33-271 (308)
64 4abn_A Tetratricopeptide repea 99.5 1E-12 3.4E-17 133.5 19.8 210 395-611 83-317 (474)
65 3ro2_A PINS homolog, G-protein 99.5 6.9E-13 2.4E-17 128.9 18.1 270 382-651 7-333 (338)
66 3ro2_A PINS homolog, G-protein 99.5 5.5E-13 1.9E-17 129.7 16.6 234 383-616 46-333 (338)
67 2ond_A Cleavage stimulation fa 99.5 2E-11 6.8E-16 116.6 26.9 218 37-260 33-270 (308)
68 3vtx_A MAMA; tetratricopeptide 99.5 9.6E-12 3.3E-16 108.8 21.7 165 380-547 5-169 (184)
69 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-11 3.6E-16 108.5 21.6 162 449-615 5-170 (184)
70 3ulq_A Response regulator aspa 99.4 1.2E-11 3.9E-16 122.6 23.4 233 308-547 109-367 (383)
71 3nf1_A KLC 1, kinesin light ch 99.4 2E-12 6.8E-17 124.1 17.0 237 378-615 25-307 (311)
72 3ulq_A Response regulator aspa 99.4 1.2E-11 4.2E-16 122.5 22.4 235 202-441 109-366 (383)
73 4abn_A Tetratricopeptide repea 99.4 1.2E-11 4.2E-16 125.4 19.2 214 72-291 84-317 (474)
74 3q15_A PSP28, response regulat 99.4 1.8E-10 6.3E-15 113.6 25.8 227 385-614 106-364 (378)
75 4gyw_A UDP-N-acetylglucosamine 99.4 2.9E-11 9.8E-16 127.5 20.8 160 449-613 9-172 (723)
76 3nf1_A KLC 1, kinesin light ch 99.4 7.8E-12 2.7E-16 120.0 15.3 176 161-365 27-223 (311)
77 3q15_A PSP28, response regulat 99.3 2.4E-10 8.1E-15 112.8 24.8 167 273-442 108-289 (378)
78 1hz4_A MALT regulatory protein 99.3 5.5E-10 1.9E-14 110.1 27.2 233 383-615 56-322 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.3 4.4E-11 1.5E-15 126.1 20.2 165 411-580 6-174 (723)
80 4i17_A Hypothetical protein; T 99.3 2.6E-10 8.8E-15 103.6 21.6 194 411-616 4-210 (228)
81 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.2E-14 107.6 26.9 166 306-475 97-279 (373)
82 3as5_A MAMA; tetratricopeptide 99.3 8.7E-10 3E-14 96.2 22.2 166 56-225 8-173 (186)
83 3as5_A MAMA; tetratricopeptide 99.3 4.4E-10 1.5E-14 98.2 19.4 163 382-547 10-172 (186)
84 4i17_A Hypothetical protein; T 99.3 7.1E-10 2.4E-14 100.6 21.1 199 378-583 5-212 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.4E-10 4.7E-15 109.4 15.1 223 392-615 13-281 (283)
86 3qky_A Outer membrane assembly 99.2 8.1E-10 2.8E-14 102.6 17.7 189 411-616 12-225 (261)
87 1qqe_A Vesicular transport pro 99.2 4.3E-10 1.5E-14 106.2 15.8 125 423-547 46-186 (292)
88 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.7E-13 93.4 23.5 181 380-568 100-300 (310)
89 3edt_B KLC 2, kinesin light ch 99.1 6.3E-10 2.1E-14 104.8 15.1 99 268-366 87-198 (283)
90 3dra_A Protein farnesyltransfe 99.1 5E-08 1.7E-12 90.9 26.8 229 392-625 45-297 (306)
91 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.8E-14 102.1 15.9 128 451-580 119-269 (292)
92 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.8E-13 93.4 21.2 180 145-331 85-282 (310)
93 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.6E-09 2.9E-13 93.0 19.7 192 448-653 3-216 (225)
94 2yhc_A BAMD, UPF0169 lipoprote 99.1 1E-08 3.5E-13 92.5 20.0 187 413-617 3-215 (225)
95 2uy1_A Cleavage stimulation fa 99.1 6.2E-08 2.1E-12 98.0 27.8 372 177-614 11-412 (493)
96 3qky_A Outer membrane assembly 99.1 4.2E-09 1.4E-13 97.8 17.6 208 378-605 13-251 (261)
97 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.9E-13 91.0 19.8 174 432-617 4-199 (212)
98 2uy1_A Cleavage stimulation fa 99.1 2.8E-07 9.7E-12 93.1 31.7 370 105-547 28-412 (493)
99 3qou_A Protein YBBN; thioredox 99.1 5.4E-09 1.9E-13 98.2 17.3 159 481-643 114-277 (287)
100 2pzi_A Probable serine/threoni 99.0 2.6E-09 9E-14 113.4 16.1 170 425-601 402-583 (681)
101 3urz_A Uncharacterized protein 99.0 7.5E-09 2.6E-13 92.0 16.3 122 490-616 60-187 (208)
102 2r5s_A Uncharacterized protein 99.0 7.9E-09 2.7E-13 89.1 16.0 161 23-188 9-171 (176)
103 3urz_A Uncharacterized protein 99.0 9.7E-09 3.3E-13 91.3 16.8 106 28-137 12-133 (208)
104 3dra_A Protein farnesyltransfe 99.0 1.8E-07 6.2E-12 87.1 25.7 222 32-259 45-286 (306)
105 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.5E-14 91.6 8.8 137 494-635 7-148 (150)
106 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.5E-14 90.4 9.4 140 456-601 4-149 (150)
107 2pzi_A Probable serine/threoni 99.0 7.1E-09 2.4E-13 110.1 16.3 173 31-210 402-582 (681)
108 2fo7_A Synthetic consensus TPR 99.0 3.8E-08 1.3E-12 80.4 17.3 128 417-547 4-131 (136)
109 3rjv_A Putative SEL1 repeat pr 99.0 4.4E-08 1.5E-12 87.2 18.9 177 466-651 3-198 (212)
110 2fo7_A Synthetic consensus TPR 99.0 4.6E-08 1.6E-12 79.9 17.0 132 382-515 3-134 (136)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 6E-09 2.1E-13 99.2 12.8 153 393-546 4-182 (307)
112 2r5s_A Uncharacterized protein 98.9 1.2E-08 4E-13 88.0 12.7 162 382-546 8-171 (176)
113 3qou_A Protein YBBN; thioredox 98.9 6.3E-08 2.2E-12 90.9 17.6 167 53-223 114-282 (287)
114 2vsy_A XCC0866; transferase, g 98.8 6.7E-08 2.3E-12 101.0 17.7 155 33-192 2-159 (568)
115 2vsy_A XCC0866; transferase, g 98.8 9.3E-08 3.2E-12 99.9 18.4 152 393-547 2-156 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 6.3E-08 2.2E-12 92.0 15.3 130 416-546 78-222 (307)
117 3q7a_A Farnesyltransferase alp 98.8 2.3E-06 7.7E-11 80.5 25.3 230 391-625 65-341 (349)
118 3gyz_A Chaperone protein IPGC; 98.8 1.2E-07 4.2E-12 78.4 14.0 92 521-615 38-133 (151)
119 3q7a_A Farnesyltransferase alp 98.8 3.3E-06 1.1E-10 79.4 24.9 177 29-211 63-257 (349)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.2E-07 1.4E-11 81.1 18.4 92 451-547 8-99 (213)
121 3u3w_A Transcriptional activat 98.8 2.5E-06 8.4E-11 80.4 24.0 153 493-645 84-261 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 1E-06 3.5E-11 83.0 21.3 84 557-640 161-255 (293)
123 4gco_A Protein STI-1; structur 98.8 1.6E-07 5.3E-12 75.3 13.3 92 521-615 15-110 (126)
124 4gco_A Protein STI-1; structur 98.8 1.7E-07 5.9E-12 75.1 13.5 93 487-582 16-112 (126)
125 2vgx_A Chaperone SYCD; alterna 98.7 6.9E-08 2.4E-12 80.1 10.4 95 518-615 20-118 (148)
126 3gyz_A Chaperone protein IPGC; 98.7 8.6E-08 3E-12 79.3 10.9 91 487-580 39-133 (151)
127 4f3v_A ESX-1 secretion system 98.7 2.2E-07 7.4E-12 84.3 14.4 185 392-581 18-238 (282)
128 3u3w_A Transcriptional activat 98.7 2.4E-06 8E-11 80.6 21.6 161 387-547 82-265 (293)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.8E-06 9.7E-11 75.6 20.6 129 58-191 8-151 (213)
130 4f3v_A ESX-1 secretion system 98.7 6.6E-07 2.3E-11 81.2 15.9 189 32-225 18-237 (282)
131 1a17_A Serine/threonine protei 98.7 6.6E-07 2.3E-11 76.0 15.2 123 487-613 16-144 (166)
132 2e2e_A Formate-dependent nitri 98.6 2.9E-07 9.9E-12 79.3 11.3 120 494-617 20-146 (177)
133 1p5q_A FKBP52, FK506-binding p 98.6 6.4E-07 2.2E-11 86.1 14.5 126 486-614 149-293 (336)
134 2e2e_A Formate-dependent nitri 98.6 2.9E-07 9.9E-12 79.3 11.0 123 30-156 20-145 (177)
135 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-05 4.9E-10 75.1 23.6 165 94-258 78-264 (293)
136 3gw4_A Uncharacterized protein 98.6 5.6E-07 1.9E-11 79.5 13.1 156 392-547 4-175 (203)
137 2vyi_A SGTA protein; chaperone 98.6 1.4E-06 4.9E-11 70.3 14.1 114 520-637 13-130 (131)
138 3dss_A Geranylgeranyl transfer 98.6 2.2E-05 7.4E-10 73.5 23.5 240 392-653 41-307 (331)
139 2c2l_A CHIP, carboxy terminus 98.6 9.7E-08 3.3E-12 89.2 7.8 98 414-513 4-101 (281)
140 3dss_A Geranylgeranyl transfer 98.6 2.1E-05 7.2E-10 73.6 23.1 153 396-553 90-270 (331)
141 2xcb_A PCRH, regulatory protei 98.5 4.2E-07 1.4E-11 74.9 10.2 94 519-615 18-115 (142)
142 1a17_A Serine/threonine protei 98.5 2.2E-06 7.6E-11 72.7 15.1 127 58-187 15-143 (166)
143 2vyi_A SGTA protein; chaperone 98.5 1.9E-06 6.4E-11 69.6 13.7 114 485-602 13-130 (131)
144 1p5q_A FKBP52, FK506-binding p 98.5 1.8E-07 6.2E-12 89.9 8.6 151 394-546 127-292 (336)
145 2c2l_A CHIP, carboxy terminus 98.5 4E-07 1.4E-11 85.0 10.4 91 27-120 11-101 (281)
146 3gw4_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 77.4 12.2 119 32-152 4-133 (203)
147 4gcn_A Protein STI-1; structur 98.5 7E-07 2.4E-11 71.7 9.6 28 588-615 85-112 (127)
148 4gcn_A Protein STI-1; structur 98.5 1.2E-06 4.1E-11 70.3 10.7 100 556-656 13-118 (127)
149 2lni_A Stress-induced-phosphop 98.5 3.6E-06 1.2E-10 68.1 13.8 101 53-155 13-113 (133)
150 1na0_A Designed protein CTPR3; 98.5 6.1E-06 2.1E-10 65.8 14.9 97 56-154 9-105 (125)
151 1na0_A Designed protein CTPR3; 98.4 7.2E-06 2.5E-10 65.3 15.1 98 91-190 9-106 (125)
152 2vgx_A Chaperone SYCD; alterna 98.4 7.1E-07 2.4E-11 73.9 9.1 98 55-154 20-117 (148)
153 2lni_A Stress-induced-phosphop 98.4 6.4E-06 2.2E-10 66.6 14.7 99 378-477 14-112 (133)
154 3upv_A Heat shock protein STI1 98.4 3.4E-06 1.2E-10 67.6 12.7 89 523-614 8-100 (126)
155 3sz7_A HSC70 cochaperone (SGT) 98.4 2.5E-06 8.6E-11 72.2 12.2 93 520-615 12-108 (164)
156 3upv_A Heat shock protein STI1 98.4 6.1E-06 2.1E-10 66.1 13.8 94 452-547 7-100 (126)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 5E-06 1.7E-10 73.0 13.0 84 520-606 89-176 (198)
158 2xcb_A PCRH, regulatory protei 98.4 2.1E-06 7.1E-11 70.6 9.9 93 95-189 22-114 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.7E-10 62.9 14.5 53 561-614 48-100 (118)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 7.2E-06 2.5E-10 69.3 13.2 92 487-581 14-109 (164)
161 2fbn_A 70 kDa peptidylprolyl i 98.3 1.2E-06 4E-11 77.1 8.1 141 67-211 15-171 (198)
162 1hxi_A PEX5, peroxisome target 98.3 4.3E-06 1.5E-10 66.3 10.6 50 563-613 63-112 (121)
163 3q49_B STIP1 homology and U bo 98.3 8.7E-06 3E-10 66.3 12.8 95 518-615 8-106 (137)
164 1wao_1 Serine/threonine protei 98.3 4.4E-06 1.5E-10 84.4 13.0 114 493-610 15-134 (477)
165 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-05 7.7E-10 61.6 14.3 90 455-546 10-99 (118)
166 1hxi_A PEX5, peroxisome target 98.3 7.9E-06 2.7E-10 64.7 11.2 87 491-580 24-114 (121)
167 4b4t_Q 26S proteasome regulato 98.3 2.3E-05 7.7E-10 78.7 17.5 119 496-614 107-244 (434)
168 3rkv_A Putative peptidylprolyl 98.2 3.5E-06 1.2E-10 71.2 8.8 94 522-616 14-127 (162)
169 2hr2_A Hypothetical protein; a 98.2 9.2E-06 3.2E-10 66.2 10.5 25 590-614 106-130 (159)
170 1elr_A TPR2A-domain of HOP; HO 98.2 9.8E-06 3.4E-10 65.2 11.0 93 522-616 7-109 (131)
171 1dce_A Protein (RAB geranylger 98.2 9E-05 3.1E-09 76.1 20.4 169 465-639 45-244 (567)
172 3ro3_A PINS homolog, G-protein 98.2 4.9E-06 1.7E-10 70.1 9.4 93 522-614 52-157 (164)
173 2kck_A TPR repeat; tetratricop 98.2 7.9E-06 2.7E-10 63.6 9.9 59 60-119 10-68 (112)
174 4b4t_Q 26S proteasome regulato 98.2 0.00011 3.7E-09 73.6 20.6 204 344-547 11-244 (434)
175 2dba_A Smooth muscle cell asso 98.2 4E-05 1.4E-09 63.2 14.5 95 450-547 29-127 (148)
176 3q49_B STIP1 homology and U bo 98.2 3.5E-05 1.2E-09 62.6 13.7 100 265-367 8-107 (137)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-05 5.7E-10 79.8 13.8 125 487-614 271-414 (457)
178 2kck_A TPR repeat; tetratricop 98.2 2.4E-05 8.3E-10 60.7 12.0 97 381-478 7-106 (112)
179 2hr2_A Hypothetical protein; a 98.2 1.4E-05 4.7E-10 65.2 10.3 96 557-653 17-134 (159)
180 2dba_A Smooth muscle cell asso 98.2 9.3E-05 3.2E-09 60.9 15.8 100 413-515 27-130 (148)
181 1elr_A TPR2A-domain of HOP; HO 98.1 1.4E-05 4.7E-10 64.3 10.2 96 57-154 5-107 (131)
182 2xev_A YBGF; tetratricopeptide 98.1 4.2E-05 1.4E-09 61.4 13.0 94 523-616 6-106 (129)
183 3rkv_A Putative peptidylprolyl 98.1 8.4E-06 2.9E-10 68.7 9.0 61 520-582 64-128 (162)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 9.8E-06 3.4E-10 81.4 10.9 148 498-648 248-413 (457)
185 3k9i_A BH0479 protein; putativ 98.1 5.4E-06 1.8E-10 65.4 6.5 83 532-615 3-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.1 2.1E-05 7.2E-10 76.3 12.0 82 557-640 279-360 (370)
187 2xev_A YBGF; tetratricopeptide 98.1 8.9E-05 3E-09 59.4 14.0 92 26-120 8-105 (129)
188 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.3E-10 66.5 9.7 131 416-546 11-156 (164)
189 1klx_A Cysteine rich protein B 98.0 4.4E-05 1.5E-09 62.0 11.3 112 498-617 9-128 (138)
190 1wao_1 Serine/threonine protei 98.0 1.4E-05 4.8E-10 80.6 10.0 118 29-150 15-134 (477)
191 3k9i_A BH0479 protein; putativ 98.0 9E-06 3.1E-10 64.0 6.9 90 563-653 2-93 (117)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 2.4E-05 8.2E-10 75.0 10.0 61 486-547 232-292 (338)
193 3n71_A Histone lysine methyltr 98.0 5.8E-05 2E-09 75.5 12.5 55 493-547 318-379 (490)
194 3n71_A Histone lysine methyltr 97.9 5.8E-05 2E-09 75.5 12.1 88 459-546 319-420 (490)
195 1dce_A Protein (RAB geranylger 97.9 0.00055 1.9E-08 70.4 19.6 134 35-173 44-190 (567)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.7E-10 74.9 8.9 59 521-581 232-294 (338)
197 1klx_A Cysteine rich protein B 97.9 0.0002 6.7E-09 58.1 11.9 111 463-581 9-127 (138)
198 1ihg_A Cyclophilin 40; ppiase 97.8 0.00012 4.2E-09 70.9 12.4 117 25-143 228-358 (370)
199 2l6j_A TPR repeat-containing p 97.7 3E-05 1E-09 60.2 5.0 26 522-547 7-32 (111)
200 2kat_A Uncharacterized protein 97.7 0.0002 6.9E-09 55.9 9.7 76 537-615 3-82 (115)
201 2l6j_A TPR repeat-containing p 97.7 0.00021 7.1E-09 55.2 9.4 86 555-641 8-98 (111)
202 1na3_A Designed protein CTPR2; 97.6 0.00065 2.2E-08 50.0 10.3 75 557-633 15-89 (91)
203 2kat_A Uncharacterized protein 97.6 0.00043 1.5E-08 54.0 9.6 80 38-120 3-82 (115)
204 3ma5_A Tetratricopeptide repea 97.5 0.00025 8.7E-09 53.6 7.6 58 556-614 12-69 (100)
205 1zu2_A Mitochondrial import re 97.5 0.00018 6.1E-09 58.5 6.4 86 32-120 14-120 (158)
206 1zu2_A Mitochondrial import re 97.4 0.00045 1.5E-08 56.1 7.6 96 391-489 13-129 (158)
207 1na3_A Designed protein CTPR2; 97.4 0.0017 5.9E-08 47.6 10.3 79 381-460 10-88 (91)
208 3ma5_A Tetratricopeptide repea 97.2 0.0017 5.8E-08 48.9 8.8 61 485-546 8-68 (100)
209 2kc7_A BFR218_protein; tetratr 97.2 0.00043 1.5E-08 52.1 4.9 55 492-547 8-63 (99)
210 3qww_A SET and MYND domain-con 97.1 0.0014 5E-08 64.3 9.6 84 531-614 310-410 (433)
211 3qww_A SET and MYND domain-con 97.1 0.0022 7.6E-08 63.0 10.5 84 496-579 310-410 (433)
212 3u64_A Protein TP_0956; tetrat 97.0 0.019 6.7E-07 51.5 14.7 87 535-623 179-279 (301)
213 3ly7_A Transcriptional activat 97.0 0.021 7.3E-07 53.6 15.0 34 410-443 190-228 (372)
214 3qwp_A SET and MYND domain-con 96.9 0.0077 2.6E-07 59.3 12.4 87 528-614 296-399 (429)
215 3qwp_A SET and MYND domain-con 96.9 0.0046 1.6E-07 60.9 10.5 93 559-651 295-401 (429)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0056 1.9E-07 45.8 8.4 59 557-616 6-65 (99)
217 3ly7_A Transcriptional activat 96.8 0.025 8.4E-07 53.2 13.9 48 378-425 192-244 (372)
218 3lvg_A Clathrin heavy chain 1; 96.8 2E-07 6.8E-12 88.3 -20.0 264 125-434 53-324 (624)
219 1pc2_A Mitochondria fission pr 96.7 0.01 3.5E-07 47.6 9.0 85 467-554 16-104 (152)
220 3bee_A Putative YFRE protein; 96.7 0.014 4.7E-07 42.9 9.1 47 500-547 25-71 (93)
221 3mkq_A Coatomer beta'-subunit; 96.5 0.084 2.9E-06 57.5 18.2 45 425-475 663-707 (814)
222 3mkq_A Coatomer beta'-subunit; 96.4 0.18 6.2E-06 54.8 20.1 24 382-405 683-706 (814)
223 1pc2_A Mitochondria fission pr 96.4 0.016 5.5E-07 46.5 8.4 81 535-616 14-101 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.3 0.031 1.1E-06 42.1 9.8 69 485-555 6-80 (104)
225 2v5f_A Prolyl 4-hydroxylase su 96.3 0.023 8E-07 42.8 8.7 63 554-616 8-76 (104)
226 3u64_A Protein TP_0956; tetrat 96.3 0.13 4.4E-06 46.2 14.5 82 143-226 180-270 (301)
227 3bee_A Putative YFRE protein; 96.2 0.048 1.6E-06 39.9 9.7 65 90-155 5-72 (93)
228 3mkq_B Coatomer subunit alpha; 96.1 0.37 1.3E-05 39.7 15.1 108 22-151 7-114 (177)
229 4ady_A RPN2, 26S proteasome re 95.9 2.3 7.7E-05 45.6 37.3 155 389-546 499-656 (963)
230 3mkq_B Coatomer subunit alpha; 95.8 0.27 9.2E-06 40.5 13.3 101 493-611 14-114 (177)
231 4h7y_A Dual specificity protei 95.7 0.19 6.7E-06 39.6 11.1 105 411-517 10-127 (161)
232 1nzn_A CGI-135 protein, fissio 95.5 0.085 2.9E-06 40.6 8.7 85 467-554 19-107 (126)
233 4h7y_A Dual specificity protei 95.5 0.12 4.1E-06 40.8 9.4 105 447-553 11-128 (161)
234 1nzn_A CGI-135 protein, fissio 95.5 0.11 3.8E-06 39.9 9.2 61 556-616 40-104 (126)
235 4ady_A RPN2, 26S proteasome re 94.5 6.2 0.00021 42.4 42.7 258 346-616 383-659 (963)
236 3lvg_A Clathrin heavy chain 1; 94.2 6.4E-05 2.2E-09 71.7 -14.0 118 412-543 197-315 (624)
237 1wy6_A Hypothetical protein ST 94.0 1.7 5.6E-05 33.6 15.2 64 382-445 93-156 (172)
238 4b4t_P 26S proteasome regulato 93.8 5.5 0.00019 39.2 21.8 194 351-547 30-246 (445)
239 1y8m_A FIS1; mitochondria, unk 93.7 2 6.9E-05 33.7 12.9 73 481-555 36-111 (144)
240 3o48_A Mitochondria fission 1 93.4 1.1 3.8E-05 34.6 10.3 73 481-555 37-112 (134)
241 4gns_B Protein CSD3, chitin bi 92.9 1.1 3.9E-05 46.8 13.2 53 560-613 346-398 (754)
242 1qsa_A Protein (soluble lytic 92.6 11 0.00036 38.9 31.1 447 129-643 10-472 (618)
243 4gns_B Protein CSD3, chitin bi 92.6 0.59 2E-05 48.9 10.5 49 585-635 612-660 (754)
244 3ffl_A Anaphase-promoting comp 92.3 1.1 3.6E-05 36.4 9.4 130 479-617 13-153 (167)
245 1wy6_A Hypothetical protein ST 92.0 3.4 0.00012 32.0 16.6 65 232-297 92-156 (172)
246 3ffl_A Anaphase-promoting comp 91.5 0.81 2.8E-05 37.0 7.8 28 520-547 123-150 (167)
247 4fhn_B Nucleoporin NUP120; pro 91.4 1.7 5.9E-05 48.9 13.4 62 487-548 902-967 (1139)
248 3o48_A Mitochondria fission 1 90.9 2.2 7.5E-05 33.0 9.4 61 556-616 45-108 (134)
249 4fhn_B Nucleoporin NUP120; pro 90.6 5 0.00017 45.2 16.2 129 128-258 901-1048(1139)
250 1zbp_A Hypothetical protein VP 90.0 8.9 0.00031 34.0 13.7 117 493-615 6-129 (273)
251 3txn_A 26S proteasome regulato 90.0 6.9 0.00024 37.4 14.2 165 414-579 19-209 (394)
252 1y8m_A FIS1; mitochondria, unk 89.9 6 0.00021 31.0 11.5 62 555-616 43-107 (144)
253 2ff4_A Probable regulatory pro 88.3 2.1 7.3E-05 41.2 9.6 73 129-202 174-251 (388)
254 1qsa_A Protein (soluble lytic 88.0 26 0.00089 36.0 33.8 77 58-140 74-150 (618)
255 2ff4_A Probable regulatory pro 87.6 3.2 0.00011 40.0 10.4 66 386-451 177-247 (388)
256 1v54_E Cytochrome C oxidase po 85.0 9.1 0.00031 27.8 9.3 50 176-225 25-74 (109)
257 4b4t_P 26S proteasome regulato 83.7 35 0.0012 33.4 21.0 102 304-409 139-247 (445)
258 1zbp_A Hypothetical protein VP 82.5 16 0.00054 32.4 11.2 113 458-581 6-130 (273)
259 3esl_A Checkpoint serine/threo 81.6 5.2 0.00018 33.6 7.5 47 535-581 95-145 (202)
260 1v54_E Cytochrome C oxidase po 81.2 13 0.00046 26.9 9.0 36 375-410 40-75 (109)
261 2y69_E Cytochrome C oxidase su 80.9 17 0.00059 28.0 9.3 48 178-225 70-117 (152)
262 3lpz_A GET4 (YOR164C homolog); 80.0 38 0.0013 31.3 20.4 83 411-512 133-215 (336)
263 4b4t_R RPN7, 26S proteasome re 79.4 12 0.0004 36.6 10.6 98 450-547 132-236 (429)
264 2wpv_A GET4, UPF0363 protein Y 78.6 40 0.0014 30.9 18.1 26 412-437 132-157 (312)
265 2wpv_A GET4, UPF0363 protein Y 77.6 43 0.0015 30.7 21.2 25 301-325 133-157 (312)
266 4b4t_R RPN7, 26S proteasome re 77.5 28 0.00095 33.9 12.7 98 416-513 133-237 (429)
267 3lpz_A GET4 (YOR164C homolog); 77.3 46 0.0016 30.8 22.5 25 301-325 135-159 (336)
268 2uwj_G Type III export protein 75.9 20 0.00067 25.9 8.7 86 34-129 20-105 (115)
269 2p58_C Putative type III secre 75.3 21 0.0007 25.8 9.5 85 35-129 22-106 (116)
270 2y69_E Cytochrome C oxidase su 74.7 27 0.00093 27.0 9.0 36 375-410 83-118 (152)
271 4a1g_A Mitotic checkpoint seri 74.4 15 0.0005 29.3 7.8 52 568-619 82-134 (152)
272 3esl_A Checkpoint serine/threo 73.8 29 0.00098 29.2 9.7 57 279-335 92-148 (202)
273 2uwj_G Type III export protein 72.1 25 0.00086 25.4 8.2 52 560-617 48-99 (115)
274 2wvi_A Mitotic checkpoint seri 71.8 10 0.00035 30.7 6.4 52 568-619 77-129 (164)
275 2p58_C Putative type III secre 71.7 26 0.00088 25.4 8.7 50 561-616 50-99 (116)
276 4aez_C MAD3, mitotic spindle c 70.5 13 0.00043 31.9 7.0 64 554-619 119-183 (223)
277 4a1g_A Mitotic checkpoint seri 65.7 50 0.0017 26.3 9.3 51 285-335 84-134 (152)
278 3txn_A 26S proteasome regulato 64.3 1E+02 0.0035 29.4 22.0 94 419-512 104-209 (394)
279 3ltm_A Alpha-REP4; protein eng 59.6 79 0.0027 26.6 19.1 142 54-211 31-172 (211)
280 2wvi_A Mitotic checkpoint seri 59.2 70 0.0024 25.9 9.3 52 285-336 79-130 (164)
281 3eiq_C Programmed cell death p 58.0 82 0.0028 29.5 10.6 24 165-188 58-81 (358)
282 1bpo_A Protein (clathrin); cla 46.7 1.1E+02 0.0038 29.6 9.5 125 479-612 356-482 (494)
283 3ltj_A Alpharep-4; protein eng 45.7 1.3E+02 0.0044 25.0 18.8 111 54-176 26-136 (201)
284 4gq2_M Nucleoporin NUP120; bet 45.6 2.1E+02 0.0071 31.4 13.1 48 128-175 899-950 (950)
285 3ltm_A Alpha-REP4; protein eng 45.5 1.3E+02 0.0046 25.1 18.6 142 89-246 31-172 (211)
286 2w2u_A Hypothetical P60 katani 44.9 73 0.0025 22.2 6.1 17 598-614 31-47 (83)
287 2crb_A Nuclear receptor bindin 42.7 43 0.0015 23.7 4.5 27 587-613 16-42 (97)
288 2v6y_A AAA family ATPase, P60 40.9 89 0.003 21.7 6.2 17 598-614 23-39 (83)
289 3eiq_C Programmed cell death p 40.6 2.1E+02 0.0072 26.8 10.4 65 234-299 220-286 (358)
290 1oai_A Nuclear RNA export fact 36.8 45 0.0015 21.4 3.7 35 21-55 20-55 (59)
291 2ijq_A Hypothetical protein; s 36.3 1.7E+02 0.0057 23.6 8.0 53 67-119 43-103 (161)
292 4ets_A Ferric uptake regulatio 35.6 76 0.0026 25.6 5.9 68 37-105 14-83 (162)
293 2ijq_A Hypothetical protein; s 35.5 1.7E+02 0.0059 23.5 8.2 51 427-477 45-103 (161)
294 1wdy_A 2-5A-dependent ribonucl 34.0 1.8E+02 0.0061 25.6 9.1 10 276-285 12-21 (285)
295 3c1d_A Protein ORAA, regulator 33.8 1.8E+02 0.0063 23.2 10.5 99 430-533 46-144 (159)
296 1wfd_A Hypothetical protein 15 33.6 1.2E+02 0.0041 21.6 6.0 15 599-613 28-42 (93)
297 2w2u_A Hypothetical P60 katani 33.4 70 0.0024 22.3 4.6 17 562-578 30-46 (83)
298 4gq2_M Nucleoporin NUP120; bet 32.5 3.4E+02 0.012 29.6 12.2 49 162-210 898-950 (950)
299 2xig_A Ferric uptake regulatio 31.7 1.9E+02 0.0065 22.8 7.7 42 493-534 35-76 (150)
300 1bpo_A Protein (clathrin); cla 31.6 3.7E+02 0.013 26.2 12.5 114 28-147 337-450 (494)
301 4aez_C MAD3, mitotic spindle c 30.9 2.4E+02 0.0082 24.2 8.3 53 283-335 131-183 (223)
302 2fe3_A Peroxide operon regulat 30.5 1.6E+02 0.0056 23.0 7.0 37 68-104 33-69 (145)
303 2bn5_A PSI; nuclear protein, s 30.3 24 0.00082 19.1 1.3 19 630-648 11-29 (33)
304 3hra_A Ankyrin repeat family p 29.0 1.8E+02 0.0063 23.8 7.8 17 66-82 12-28 (201)
305 2r9g_A AAA ATPase, central reg 28.9 2.6E+02 0.0088 23.4 10.2 19 103-121 26-44 (204)
306 2w57_A Ferric uptake regulatio 28.6 1.3E+02 0.0044 23.9 6.1 59 475-534 8-67 (150)
307 2d2s_A Exocyst complex compone 28.5 2.9E+02 0.0099 23.9 9.4 29 195-223 90-118 (235)
308 1k1a_A B-cell lymphoma 3-encod 28.5 1.4E+02 0.0048 25.5 7.2 184 97-290 12-204 (241)
309 1mzb_A Ferric uptake regulatio 28.2 1.3E+02 0.0044 23.3 6.0 59 475-534 9-68 (136)
310 3bge_A Predicted ATPase; struc 28.1 2.6E+02 0.009 23.3 9.1 17 105-121 21-37 (201)
311 2zu6_B Programmed cell death p 27.5 2.6E+02 0.009 25.5 8.6 23 200-222 7-29 (307)
312 1wdy_A 2-5A-dependent ribonucl 27.4 1.5E+02 0.0051 26.1 7.4 19 63-81 9-27 (285)
313 3eyy_A Putative iron uptake re 27.3 1.7E+02 0.0058 23.0 6.6 32 72-103 33-64 (145)
314 2v6x_A Vacuolar protein sortin 27.1 1.6E+02 0.0054 20.5 6.0 17 598-614 25-41 (85)
315 2d2s_A Exocyst complex compone 27.1 3.1E+02 0.011 23.8 9.9 30 159-188 89-118 (235)
316 3e3v_A Regulatory protein RECX 26.9 2.6E+02 0.0089 22.9 10.2 113 431-546 50-164 (177)
317 4b4t_S RPN3, 26S proteasome re 26.8 4.8E+02 0.016 25.9 11.4 65 126-190 231-299 (523)
318 2f6m_A Suppressor protein STP2 26.4 1.3E+02 0.0046 19.7 4.5 46 93-139 4-49 (65)
319 2fe3_A Peroxide operon regulat 25.7 2E+02 0.0068 22.5 6.7 58 476-534 14-71 (145)
320 3i5p_A Nucleoporin NUP170; hel 25.2 2.8E+02 0.0097 27.6 9.0 32 586-617 217-248 (525)
321 3ctd_A Putative ATPase, AAA fa 25.0 3.1E+02 0.011 23.1 9.2 31 94-124 35-68 (213)
322 3ax2_A Mitochondrial import re 25.0 1.5E+02 0.0052 20.0 4.8 26 591-616 22-47 (73)
323 2xig_A Ferric uptake regulatio 24.4 2.6E+02 0.0089 22.0 7.3 45 237-281 32-76 (150)
324 1wgl_A TOLL-interacting protei 23.7 1.5E+02 0.0051 19.0 5.1 43 7-49 9-52 (59)
325 1mzb_A Ferric uptake regulatio 22.8 1.9E+02 0.0064 22.3 6.0 58 440-498 9-67 (136)
326 4fke_A Aminopeptidase N; zinc 22.6 7.6E+02 0.026 26.8 15.8 163 60-225 690-860 (909)
327 3ctd_A Putative ATPase, AAA fa 22.3 3.6E+02 0.012 22.8 9.1 24 175-198 49-72 (213)
328 2b7e_A PRE-mRNA processing pro 22.2 64 0.0022 20.7 2.4 29 213-241 3-31 (59)
329 2fu4_A Ferric uptake regulatio 22.0 1.9E+02 0.0066 19.6 6.3 27 468-494 36-62 (83)
330 3c1d_A Protein ORAA, regulator 21.8 3.1E+02 0.01 21.9 10.7 29 501-529 47-75 (159)
331 2rpa_A Katanin P60 ATPase-cont 21.5 82 0.0028 21.6 3.1 26 590-615 16-41 (78)
332 1ug3_A EIF4GI, eukaryotic prot 21.4 3.3E+02 0.011 25.2 8.4 230 235-496 15-256 (339)
333 3mv2_A Coatomer subunit alpha; 21.4 4.7E+02 0.016 23.9 11.3 49 431-479 187-237 (325)
334 3d5l_A Regulatory protein RECX 21.3 3.9E+02 0.013 22.8 10.9 110 430-542 92-203 (221)
335 3bge_A Predicted ATPase; struc 21.2 3.6E+02 0.012 22.5 9.0 22 175-196 21-42 (201)
336 1ya0_A SMG-7 transcript varian 21.1 3.9E+02 0.013 26.4 9.1 73 523-598 156-232 (497)
337 3eyy_A Putative iron uptake re 20.6 1.6E+02 0.0056 23.0 5.3 34 500-533 33-66 (145)
338 2w57_A Ferric uptake regulatio 20.5 2E+02 0.0067 22.7 5.8 58 440-498 8-66 (150)
339 3pvs_A Replication-associated 20.5 5.9E+02 0.02 24.7 13.8 55 208-262 267-326 (447)
340 3t8k_A Uncharacterized protein 20.3 3E+02 0.01 22.4 7.3 22 138-159 47-68 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=345.07 Aligned_cols=502 Identities=13% Similarity=0.030 Sum_probs=365.1
Q ss_pred cCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (673)
Q Consensus 104 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 183 (673)
.|.+..+...+..+.. ++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.+|...|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3444444444444332 4555666666666666666666666666653 234555666666666666666666666
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE---------------KNIEPTVISYTTMIKGYVAVERAD 248 (673)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~ll~~~~~~~~~~ 248 (673)
|+.+... +++..+++.++.+|.+.|++++|.++|+++.. .+.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 6665432 34566666666666666666666666653211 123445788889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH--H-HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHH
Q 005856 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQK--V-LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
+|+++|++|.+.+ +.+...+..+...+...+..+.+.. + +..+...+... ...++..++..|.+.|++++|..+|
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999888753 2344555555544433332222111 1 33333322222 3345556677888899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHH
Q 005856 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ 405 (673)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 405 (673)
+++.+. +++..++..++..|.+.|++++|+.+|+++.+.. + .+..++..++.++.+.|++++|..+++.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID----P-----YNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 988765 5788899999999999999999999999997643 1 2566889999999999999999999999
Q ss_pred HHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 005856 406 LMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS 485 (673)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 485 (673)
+.+..+.+..+++.++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 998888889999999999999999999999999998753 3468899999999999999999999999998753 45778
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-----HHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN-----FDS 556 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-----~~~ 556 (673)
++..++.+|.+.|++++|.++|+++.+..+. +..+|..++.+|.+.|++++|+++++++.+. +..|+ +..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 8999999999999999999999999987654 7888999999999999999999999998874 55676 345
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (673)
++.++.+.|++++|..+++++++.++. +...|..++.+|.+.|++++|.+.++++++.. +.+...+..+..+|
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 788888999999999999999887643 67788899999999999999999999998864 33455555555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-39 Score=342.98 Aligned_cols=503 Identities=12% Similarity=0.074 Sum_probs=365.2
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (673)
...|.+..+...+..++. ++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 344555555555544432 46777888888888888888888888888753 467777778888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCcCHHHHHHHHHHHHcCCC
Q 005856 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---------------GISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~ 211 (673)
.+|+++.. .+++..+++.++.+|.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 88887754 2567778888888888888888888888743222 234467888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR--I-FDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
+++|.++|+++.+.+. .+...+..+...+...+..+.+.. + +..+...+..+...+|..++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 8888888888887542 245556666555544433322221 1 44555444444555667777778888888888888
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
|+++.+. |++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+..
T Consensus 295 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 295 LSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 8887664 3478888888888888888888888888887765 4567778888888888888888888888886432
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
+.+..++..++..|.+.|++++|..+|+++.+..+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+
T Consensus 370 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 370 --------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp --------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred --------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 23566788888888888888888888888888777788888888888888888888888888887763 346
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC--HHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN--LDLV 522 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~ 522 (673)
..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 7788888888888888888888888888653 346778888888888888888888888888776 55666 6788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
..++.+|.+.|++++|++.++++.+. .|+ +..++.+|...|++++|..+++++++.+|. +...+..++.+|
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~ 594 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 88888888888888888888888773 343 456777788888888888888888887654 455565666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.1e-27 Score=233.86 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=148.1
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005856 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (673)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 285 (673)
+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+..++...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444331 1122333334444444444444444444443321 23344444444444444444444
Q ss_pred HHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 286 QKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
...|++++.. .|++..++..++.++.+.|++++|...|+++.+.. |.+...+..+...+...|++++|+..|+++++
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444442 33344444444444444455555554444444432 22233333444444444555555555544433
Q ss_pred chhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 366 KEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.. + .+..+|..+...+...|++++|...|+++.+..|.+...+..+...+...|++++|...++++....
T Consensus 164 ~~----p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 164 TQ----P-----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HC----T-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred hC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 21 1 1233444444445555555555555555555444445555555555555555555555555544432
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 446 PRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 446 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHH
Confidence 1134445555555555555555555555554422 112334444444555555555555555555544322 44444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..+...|++++|++.++++.+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444455555555544444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.5e-27 Score=234.86 Aligned_cols=380 Identities=15% Similarity=0.096 Sum_probs=238.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
...+.+.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...++...+.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 445667778888888887777765 6667777777777777788888887777776654 3367777777777777788
Q ss_pred HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED 186 (673)
Q Consensus 107 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (673)
+++|...|+++.+.. +.+...|..+..++.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888887777777653 3345567777777777777777777777776653 22344555666667777777777777777
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005856 187 MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (673)
+.+.... +..+|..+..++...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..... +.+.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 7665322 45667777777777777777777777776643 2245566666666667777777777666665542 2345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 267 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.++..+...+...|++++|...++++++. .|.+..++..++..+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 56666666666666666666666666663 34455556666666666666666666666655542 3445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+.+.|++++|+..++++++.. +.+..++..+...+.+.|++++|...|+++.+..|.++..+..+...+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF---------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC---------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 555555555555555553211 11233444555555555555555555555554444444445444444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.2e-29 Score=249.77 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=170.1
Q ss_pred HHHHHHHhhcccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC---------H
Q 005856 73 NHARCILLDMPKKGVQWDE-DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR---------Y 142 (673)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~ 142 (673)
..+..+.+.+.+.+....+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666666655444 45788889999999999999999999999999999999999999887654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 005856 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 005856 223 KEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (673)
Q Consensus 223 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (673)
.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998888765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.3e-28 Score=243.69 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHcCCccCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 005856 109 ESVKIFDIMKQLGVERSVK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---------LE 178 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 178 (673)
.+..+.+.+.+.+....+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445555666655554443 4677778888888888888888888888888888888888888776543 56
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc
Q 005856 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (673)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (673)
+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..| +..+++.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777 77777777766654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-23 Score=219.24 Aligned_cols=256 Identities=11% Similarity=0.007 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHH-----CCCC-------CCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 005856 279 AGKMVEVQKVLREMVE-----RYIP-------PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (673)
Q Consensus 279 ~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (673)
.|++++|...++++.. .... |.+..++..++..+...|+++.|...++.+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 5666666666666655 2111 112344455555555555555555555555544311 4445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh
Q 005856 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (673)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (673)
+...|++++|+..++.+++.. +.+...+..+...+...|++++|...++++.+..+.+..++..+...+..
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHCCCHHHHHHHHHHHhhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 555555555555555554321 11233444455555555555555555555555544444555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHhc---cC
Q 005856 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SSLFRSVMESLFE---DG 498 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g 498 (673)
.|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 555555555555554431 123344455555555555555555555554432100 11 1144444445555 55
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
++++|...++++.+..+. +...+..++.++...|++++|...++++.+
T Consensus 430 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555544322 344444455555555555555555555544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-23 Score=216.69 Aligned_cols=448 Identities=10% Similarity=0.003 Sum_probs=292.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (673)
..+...+..+.+.|++++|...|+++.+.+ |+..++..+..+|...|++++|...|+++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 455556666667777777777777766654 466666667777777777777777777766654 34556666677777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 005856 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216 (673)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 216 (673)
...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 777777777777777666542 2333333333333333222222222222221111111111110000000111111111
Q ss_pred HHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHH
Q 005856 217 KLFAEMKEKNI---------EPTVISYTTMIKGYVA---VERADDALRIFDEMKS-----FDVK--------PNAVTYTA 271 (673)
Q Consensus 217 ~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~ 271 (673)
.+...+..... +.+...+......+.. .|++++|+..|+++.+ .... .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111100 1124444444444444 7888888888888876 3111 23456777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 272 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+...+...|++++|...++++... .|. ...+..++..+...|+++.|...++.+.... +.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL--FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 778888889999999999888875 454 7788888888889999999999998888764 456677888888899999
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
++++|+..++++++.. + .+...+..+...+...|++++|...++.+.+..+.++.++..+...+...|+++
T Consensus 319 ~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD----P-----ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp CTTHHHHHHHHHHHTC----S-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC----h-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999887643 1 244577888888899999999999999998888778888999999999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHH
Q 005856 432 SAFEIVKIMGRRGVP-RD----ADAYICLIESYLR---KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTA 503 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 503 (673)
+|...++.+.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 999999888763211 11 3478888899999 999999999999988753 34566778888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 005856 504 SRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~ 523 (673)
...|+++.+..+. +...+.
T Consensus 469 ~~~~~~a~~~~~~-~~~~~~ 487 (514)
T 2gw1_A 469 ITLFEESADLART-MEEKLQ 487 (514)
T ss_dssp HHHHHHHHHHCSS-HHHHHH
T ss_pred HHHHHHHHHhccc-cHHHHH
Confidence 9999999988654 334433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1e-21 Score=200.49 Aligned_cols=317 Identities=16% Similarity=0.162 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45566666666667777777777777666542 2355666666666666666666666666666543 334556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCcH---HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 275 GLCDAGKMVEVQKVLREMVERYIPPKDN---SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+|...|++++|...|+++... .|.+. ..+..+...+... .+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 666666666666666666553 33333 3444333332110 1223344567778
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (673)
++++|+..|+.+++.. +.+...+..+..+|...|++++|...|+++.+..+.++.++..++.+|...|+++
T Consensus 158 ~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC---------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888876543 1245567777777888888888888888877777777777888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICL------------IESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESL 494 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 494 (673)
+|...++.+.... +.+...+..+ ...+...|++++|...++++.+.. |+ ...+..+...+
T Consensus 229 ~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 229 LSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHH
Confidence 8888887777642 2233444333 556666666666666666666532 33 23455556666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
.+.|++++|...++++.+..+. +...|..++.+|...|++++|+..++++.+ ..|+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 6666666666666666665332 456666666666666666666666666665 4454
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.2e-22 Score=212.65 Aligned_cols=434 Identities=11% Similarity=0.049 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYN 207 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 207 (673)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.+.. +...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 34445555555555555555555555442 224555555555555555666666555555554322 4555555555555
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCC
Q 005856 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF------DVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~ 281 (673)
..|++++|...|+.+.. .|+ .....+..+...+....+...++.+... ...|+..... .+....+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSC
T ss_pred HcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcC
Confidence 56666666665542211 111 1111222333334445555555555332 1123332222 2233334
Q ss_pred HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc--------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 005856 282 MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK--------SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (673)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (673)
.+.+...+..... ..+........+...+.. .|+++.|..+++.+.+.. +.+...+..+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~---------- 242 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA---------- 242 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH----------
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH----------
Confidence 4333333222111 111111122222222221 134556666666655542 1121111111
Q ss_pred HHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHH
Q 005856 354 DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (673)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 433 (673)
..++..+...+...|+++.|...++.+.+..+. ..++..+...+...|++++|
T Consensus 243 --------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 243 --------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred --------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 112233333444445555555555555444433 44555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 434 FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 296 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 2244555555555555666666666665555432 123345555555666666666666666666665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHcc----------CChHHHHHHHH
Q 005856 514 GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEK----------GKTIAAVKLLD 575 (673)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~----------g~~~~A~~~~~ 575 (673)
.+. +...+..++.++...|++++|+..++++.+.. ..+. .......+... |++++|...++
T Consensus 374 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp CTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 433 34555566666666666666666666655421 1111 11233444555 77777777777
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++..+. +...+..++.+|.+.|++++|.+.++++++..
T Consensus 453 ~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 453 KACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77776543 44556677777777777777777777777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.6e-21 Score=198.97 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDI 116 (673)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 116 (673)
..+...+..+...+ |.+...+..++..+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555554 66777788888888888888888888888876543 3677888888888888888888888888
Q ss_pred HHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHH
Q 005856 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR---HTYNVM------------LWGFFLSLKLETAI 181 (673)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 181 (673)
+.+.+ +.+...+..+..+|.+.|++++|...|+++.+.++ .+. ..+..+ ...+...|++++|.
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87765 45577788888888888888888888888876532 223 444444 34477888888888
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (673)
..|+.+.+... .+..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++....
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888887643 367788888888888888888888888887653 3467788888888888888888888888887642
Q ss_pred CCCCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCc----HHhHHHHHHHHhccCChHHHHHHH
Q 005856 262 VKPNAVTYTAL------------LPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 262 ~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
+.+...+..+ ...+...|++++|...|++++.. .|.+ ...+..++.++.+.|++++|...+
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334444443 67788889999999999888874 4434 336777888888899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 326 KAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
+.+.+.. +.+...+..+..+|...|++++|...|+++++.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8887753 456788888888899999999999999988653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=6.9e-22 Score=206.76 Aligned_cols=401 Identities=13% Similarity=0.076 Sum_probs=308.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 005856 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (673)
Q Consensus 25 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 104 (673)
.....+...|+++.|+..|+.+.+.+ |.++.++..++.++...|++++|.+.++++.+.++. +..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHc
Confidence 34558889999999999999999987 789999999999999999999999999999887644 788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHH--------------
Q 005856 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG------IEPTRHTY-------------- 164 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~-------------- 164 (673)
|++++|...|+.+.. .|+ .....+..+...+....|...++++.... ..|+....
T Consensus 107 g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999974422 222 22333445555666678888888875431 11222211
Q ss_pred ----------------HHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHcCCChH
Q 005856 165 ----------------NVMLWGFF--------LSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMD 213 (673)
Q Consensus 165 ----------------~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~ 213 (673)
..+...+. ..|++++|..+++.+.+.... +. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11111111 124788999999999876433 22 34666778888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 214 EAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV 293 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 293 (673)
+|...|+++... .|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999986 4567889999999999999999999999998764 4567889999999999999999999999999
Q ss_pred HCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 294 ERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
.. .|.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..|+.+++.... .
T Consensus 338 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~ 411 (537)
T 3fp2_A 338 SL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV---Q 411 (537)
T ss_dssp HH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---C
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc---c
Confidence 85 46678899999999999999999999999998874 556778889999999999999999999999876521 1
Q ss_pred CCCCCchhhHHHHHHHHHcc----------CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005856 374 STLDMEASSYNPMIQHLCHN----------GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 443 (673)
.........+......+... |++++|...++++.+..+.++.++..+..+|...|++++|...|+.+.+.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11112222344445566666 88888888888888887778888888888888888888888888888774
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=9.1e-17 Score=171.68 Aligned_cols=384 Identities=11% Similarity=0.108 Sum_probs=203.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV--QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 131 (673)
.++.--...+++|...|.+.+|++++++++-.+- .-+...-+.++.+..+. +..+.....++... .+ ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YD---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----cc---HHH
Confidence 4455555566666666666666666666653211 12334444455555444 44444444444432 11 233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 132 LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 132 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 5555666666666666666641 11111222222 4466666666665431 45566666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 212 MDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE 291 (673)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 291 (673)
+++|.+.|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 255566666666666666666666666555432 22222233556666666655433221
Q ss_pred HHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccC
Q 005856 292 MVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371 (673)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 371 (673)
. .+ +...+..+...+...|++++|...|..+ ..|..+...|.+.|+++.|++.++++
T Consensus 1191 --~---~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------- 1247 (1630)
T 1xi4_A 1191 --N---GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------- 1247 (1630)
T ss_pred --h---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--------
Confidence 1 12 3444555666666666666666666654 23666666666666666666666665
Q ss_pred CCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 005856 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA 451 (673)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 451 (673)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 23456666666666666666665544432 1244555566666666666666666665555432 223344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC------chhhHHHHHHHHhccCCHHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDG-HSP------ASSLFRSVMESLFEDGRVQTAS 504 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~------~~~~~~~l~~~~~~~g~~~~a~ 504 (673)
|+.+...|++. .+++..+.++...+.+ +++ +...|..+...|.+.|+++.|.
T Consensus 1317 ftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1317 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 54455555442 2222222222222211 111 2345666666666666666655
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.7e-19 Score=176.46 Aligned_cols=328 Identities=14% Similarity=0.132 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 005856 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (673)
Q Consensus 266 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (673)
...+..+...+...|++++|...|++++.. .|.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 445666667777777777777777777764 45566777777777777777777777777776653 345566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
.+...|++++|+..|+++++.. +.. ..+...+..+..... ...+..+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~ 131 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN----PSE--QEEKEAESQLVKADE----------------------MQRLRSQALDAF 131 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC----CCH--HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC----Ccc--cChHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 7777777777777777765322 000 012222222210000 001112234445
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHH
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (673)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 2244455555555555555555555555555421 2234444455555555555555555
Q ss_pred HHHHHHHcCCCCCHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHccC
Q 005856 506 VMKSMVEKGVKENLDLV------------AKILEALLMRGHVEEALGRIDLMMQSGSVPNF--------DSLLSVLSEKG 565 (673)
Q Consensus 506 ~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~~~~~~g 565 (673)
.++++.+..+. +...+ ..++..+...|++++|+..++++.+ ..|+. ..++..+...|
T Consensus 210 ~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 210 EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHcc
Confidence 55555554332 22222 1235567777888888888877776 33331 12456666788
Q ss_pred ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (673)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (673)
++++|...++++++..+. +...+..++.++...|++++|.+.++++++.. +.+...+..+..++
T Consensus 287 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 888888888888876543 46667778888888888888888888888754 23344444444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.1e-18 Score=171.91 Aligned_cols=334 Identities=11% Similarity=0.061 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777777788888888887777654 3456677777777777777777777777776653 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 170 GFFLSLKLETAIRFFEDMKSRGIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (673)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 247 (673)
.+...|++++|...++.+.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777765320 12333333311100 01122234555566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (673)
++|+..++++.+.. +.+...+..+...+...|++++|...++++... .|.+..++..+...+...|++++|...++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666665542 334555666666666666666666666666653 344566666666666666666666666666
Q ss_pred HHhCCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCC
Q 005856 328 MIRLSIPTEAGHYG------------ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (673)
Q Consensus 328 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (673)
..+.. +.+...+. .+...+...|++++|+..++++++.. +. ........+..+..++...|+
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-chHHHHHHHHHHHHHHHHccC
Confidence 65542 22222221 22455666777777777777775543 11 000011224445566666777
Q ss_pred HhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+++|...++...+..+.++.++..+..++...|++++|...|+.+.+.. +.+...+..+..+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 7777777777766666666677777777777777777777777766643 1234444444433
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=8.2e-16 Score=164.45 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=97.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
.+++++|.++.++.. +..+|..+..++...|++++|+..|.+. -|...|..++.++.+.|++++|.+.
T Consensus 1089 i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555555444331 2344445555555555555555554331 2344444455555555555555555
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (673)
+....+.. + ++...+.++.+|.+.++++...... + .++...+..+...|...|++++|..+|..+
T Consensus 1157 L~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1157 LQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 54443321 1 2222223444444444444322221 1 223333444444555555555555555443
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005856 369 ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
..|..+..++.+.|+++.|.+.+++. .++.+|..+..+|...|++..|......+. .+
T Consensus 1222 ------------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~ 1279 (1630)
T 1xi4_A 1222 ------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 1279 (1630)
T ss_pred ------------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cC
Confidence 13444555555555555555554443 233445545555555555444444333211 23
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMI 476 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 476 (673)
+..+..++..|.+.|.+++|+.+++..+
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344444455555555555555554443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=8.2e-18 Score=174.69 Aligned_cols=431 Identities=10% Similarity=0.064 Sum_probs=208.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 005856 149 FNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE 228 (673)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (673)
|++.++.. +-+...|..++. +...|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444432 336667777776 366788888888888887763 335677777888888888888888888887765 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCHHHHHHHHHHH
Q 005856 229 PTVISYTTMIKGY-VAVERADDALR----IFDEMKS-FDVKP-NAVTYTALLPGLCD---------AGKMVEVQKVLREM 292 (673)
Q Consensus 229 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 292 (673)
|+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666666666433 34466555544 5555543 23333 34555555554433 45666777777766
Q ss_pred HHCCCCCCc--HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhcc
Q 005856 293 VERYIPPKD--NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (673)
Q Consensus 293 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (673)
+.. |.. ...|..........|. ..+ ..++. ...+++..|..++..........
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 662 211 1222222111100010 000 01110 12344566666665532111000
Q ss_pred CC-CCCCCCc--------hhhHHHHHHHHHcc----CCH----hHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-------
Q 005856 371 RP-QSTLDME--------ASSYNPMIQHLCHN----GQT----GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK------- 426 (673)
Q Consensus 371 ~~-~~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 426 (673)
.. ...+.|+ ...|...+...... ++. ..+..+|+++....|.++..|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhh
Confidence 00 0011222 12344433322211 121 255566666666666666666666666654
Q ss_pred cCChh-------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch--hhHHHHHHHHhcc
Q 005856 427 EGNPD-------SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS--SLFRSVMESLFED 497 (673)
Q Consensus 427 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 497 (673)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+++++++. .|+. ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 56655 56666666654212224555666666666666666666666666553 2321 2455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEA-LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~ 572 (673)
|++++|..+|+++.+..+. +...|...+.. +...|++++|..+|++.++ ..|+ +..++..+.+.|+.++|..
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 5555555555555554221 12222111111 1234455555555554444 1222 2223333334444444444
Q ss_pred HHHHHhcCCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 573 LLDFCLGRDCII---DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 573 ~~~~~~~~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+|++++..++.+ ....|...+......|+.+.+.++..++.+
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444432211 112333333334444444444444444443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=2.3e-17 Score=169.53 Aligned_cols=352 Identities=11% Similarity=0.003 Sum_probs=213.0
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCc
Q 005856 230 TVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKD 301 (673)
Q Consensus 230 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 301 (673)
+...+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|...|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 34444444444444 445555555555544432 33444444444444 455555555555554432 3
Q ss_pred HHhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHchhccCCC
Q 005856 302 NSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 302 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
+..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------ 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------
Confidence 3444445555544 455555555555555433 33444445555544 455666666666654321
Q ss_pred CCCCCchhhHHHHHHHHHc----cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005856 374 STLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 445 (673)
+...+..+...|.. .++.++|...|++..+.+ ++.++..+...|.. .+++++|..+|+...+.+
T Consensus 182 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 182 -----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred -----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 33455555555555 566666666666666553 44556666666664 667777777777776653
Q ss_pred CCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCC
Q 005856 446 PRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-----GRVQTASRVMKSMVEKGVK 516 (673)
Q Consensus 446 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~ 516 (673)
+...+..+...|.. .+++++|...+++..+.| +...+..+...+... +++++|..+|++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 44555666666666 677777777777776543 334455555555555 78888888888877764
Q ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhH
Q 005856 517 ENLDLVAKILEALLMRG---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASY 589 (673)
Q Consensus 517 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 589 (673)
+...+..+...|...| ++++|++.+++..+.+....+..+...+.. .+++++|..+++++.+.+ ++..+
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 4456666777776655 677888888887776433334556666666 678888888888888765 35666
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 005856 590 EKVLDALLA----AGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 590 ~~l~~~l~~----~g~~~~A~~~~~~~~~~~ 616 (673)
..++.+|.. .|++++|.+.++++.+.+
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 778888887 788888888888888765
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.4e-17 Score=169.35 Aligned_cols=354 Identities=13% Similarity=0.055 Sum_probs=219.2
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 005856 195 DVVTYNTMINGYNR----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNA 266 (673)
Q Consensus 195 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 266 (673)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 34455555555555 555555555555555433 34
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCChh
Q 005856 267 VTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK----SGHLNAAADVLKAMIRLSIPTEAG 338 (673)
Q Consensus 267 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 338 (673)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 444445555544 455666666666555542 44455555555554 556666666666665542 445
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHc----cCCHhHHHHHHHHHHHcC
Q 005856 339 HYGILIENFCK----AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH----NGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 339 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 410 (673)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555 566666666666664421 33345555555554 567777777777766653
Q ss_pred CCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 005856 411 VLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-----GEPADAKTALDSMIEDGHS 481 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~ 481 (673)
++..+..+...|.. .+++++|..+|+...+.+ +...+..+...|... +++++|...+++..+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 44556666666666 677788888887777653 455666677777766 78888888888877754
Q ss_pred CchhhHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCH
Q 005856 482 PASSLFRSVMESLFEDG---RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 482 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
+...+..+...+...| ++++|..+|++..+.+ +...+..+...|.. .+++++|+..+++..+.+.....
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 3345555666665545 7788888888887764 56677778877777 77888888888888776532224
Q ss_pred HHHHHHHHc----cCChHHHHHHHHHHhcCCCC
Q 005856 555 DSLLSVLSE----KGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 555 ~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~ 583 (673)
..+...|.. .+++++|..+++++++.+++
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 556667766 78888888888888887643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.3e-18 Score=169.30 Aligned_cols=291 Identities=14% Similarity=0.019 Sum_probs=224.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
+.+...+..+...+...|++++|+.+|+++++.. + .+...+..++.++...|++++|...++++.+..+.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----P-----FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 4556667777777888888888888888887643 1 233456667777788888888888888888887778
Q ss_pred HHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005856 414 PVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 492 (673)
+.++..+...+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 888888888888888 8888998888888754 3356778888888888899999999998888754 234556667788
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C---CCC----HHHHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG----S---VPN----FDSLLSVL 561 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~p~----~~~~~~~~ 561 (673)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. . .|. +..++..+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 888899999999999998887554 67788888888999999999999988887621 0 022 45677788
Q ss_pred HccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCcc
Q 005856 562 SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL-NQEGNTK 638 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 638 (673)
...|++++|...++++++..+. +...+..++.++.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8899999999999999887654 45667789999999999999999999988764 34666777788877 4555543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.1e-17 Score=170.32 Aligned_cols=424 Identities=10% Similarity=0.076 Sum_probs=211.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005856 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV 122 (673)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~ 122 (673)
|+.+++.+ |.+..+|..++.. .+.|++++|..+|+++++.. +.+...|...+..+.+.|++++|..+|+++.+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 34444444 5566666666663 55667777777777766653 2356666666666666777777777777766643
Q ss_pred ccCHhhHHHHHHHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 005856 123 ERSVKSYDALFKLI-LRRGRYMMAKR----YFNKMLSE-GIEP-TRHTYNVMLWGFFL---------SLKLETAIRFFED 186 (673)
Q Consensus 123 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 186 (673)
|+...|...+... ...|+++.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4555665555422 23455555443 55544332 3332 34455555544433 4666667777766
Q ss_pred HHhCCCCcCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 187 MKSRGISLDVVTYNTMINGY-------------NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRI 253 (673)
Q Consensus 187 ~~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 253 (673)
..+.........|....... .+.+++..|..++..+...
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~---------------------------- 207 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV---------------------------- 207 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH----------------------------
Confidence 66531111112222221110 0112333333333331100
Q ss_pred HHHHHhC---CCCCC--------HHHHHHHHHHHHc----CCCH----HHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc
Q 005856 254 FDEMKSF---DVKPN--------AVTYTALLPGLCD----AGKM----VEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (673)
Q Consensus 254 ~~~~~~~---~~~~~--------~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (673)
....+. .++|+ ...|...+..... .++. ..+..+|++++.. .|.++..|..++..+.+
T Consensus 208 -~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 208 -MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp -HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred -HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 000110 01222 1222222221111 1121 2445555555553 34455555555555543
Q ss_pred -------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCc-
Q 005856 315 -------SGHLN-------AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME- 379 (673)
Q Consensus 315 -------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 379 (673)
.|+++ .|..+|++..+.-.|.+...+..++..+.+.|++++|..+|+++++.. +. +
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~-----~~ 355 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DI-----DP 355 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----SS-----CH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----cc-----Cc
Confidence 45554 566666666542123345555555666666666666666666665421 10 1
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRG-HSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
...|...+..+.+.|+.+.|..+|++..+..+.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 13455555555556666666666666665543333333322222 224566666666666665532 2245666666666
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 459 YLRKGEPADAKTALDSMIEDG-HSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666542 1221 224555555555566666666666666654
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.9e-18 Score=165.18 Aligned_cols=298 Identities=10% Similarity=0.021 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005856 161 RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG 240 (673)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (673)
...+..+...+...|++++|..+++++.+.... +...+..++.++...|++++|...++++.+.. +.+...|..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444455555555555555555555544221 33344444455555555555555555555432 2234455555555
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChH
Q 005856 241 YVAVE-RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (673)
Q Consensus 241 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (673)
+...| ++++|...|+++.... +.+...+..+...+...|++++|...++++... .|.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 55555 5566666665555432 223445555666666666666666666666553 2334555556666677777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHH
Q 005856 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (673)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (673)
.|...++++.+.. +.+...+..+...+...|++++|+..++++++................++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766653 445666777777788888888888888887765422111112233456788888899999999999
Q ss_pred HHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HhcCCh
Q 005856 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY-LRKGEP 465 (673)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 465 (673)
...+++..+..+.++.++..+..++...|++++|...++.+.+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999998888888889999999999999999999999888753 33677777777777 344544
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.6e-18 Score=171.58 Aligned_cols=288 Identities=14% Similarity=0.091 Sum_probs=228.0
Q ss_pred HHhcCCHHHHHH-HHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 347 FCKAEMYDRAIK-LLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 347 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
+...|++++|+. .+++.+... + .....+...+..+...+...|++++|...++++.+..+.++.++..++.++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~----~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFE----E-ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCCCCC----S-SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcC----C-CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344578888888 777664321 1 1112245678889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-hhHHH---------------
Q 005856 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRS--------------- 489 (673)
Q Consensus 426 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~--------------- 489 (673)
..|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. |+. ..+..
T Consensus 110 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 110 ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------C
T ss_pred HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHH
Confidence 9999999999999998864 3478899999999999999999999999999854 332 22211
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHcc
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEK 564 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~ 564 (673)
.+..+...|++++|..+++++.+..+.. +...+..++.++...|++++|+..++++.+ ..|+ +..++..+...
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHc
Confidence 2333448899999999999999985543 578889999999999999999999999988 4454 45577888899
Q ss_pred CChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhc
Q 005856 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----------DWKSSDKLIAGLNQE 634 (673)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~ 634 (673)
|++++|+..++++++..+. +...+..++.+|.+.|++++|.+.+++++...... ....+..++.+|...
T Consensus 265 g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9999999999999997643 56778899999999999999999999998743211 267888899999999
Q ss_pred CCcchHHHHHH
Q 005856 635 GNTKQADILSR 645 (673)
Q Consensus 635 g~~~~a~~~~~ 645 (673)
|+.++|..+.+
T Consensus 344 g~~~~A~~~~~ 354 (368)
T 1fch_A 344 GQSDAYGAADA 354 (368)
T ss_dssp TCGGGHHHHHT
T ss_pred CChHhHHHhHH
Confidence 99999987764
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.5e-18 Score=169.05 Aligned_cols=286 Identities=12% Similarity=-0.003 Sum_probs=193.3
Q ss_pred CChHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHH
Q 005856 316 GHLNAAAD-VLKAMIRLSI---PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC 391 (673)
Q Consensus 316 g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (673)
|+++.|.. .+++...... ..+...+..+...+...|++++|+..|+++++.. +.+..++..+..++.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------PKHMEAWQYLGTTQA 109 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHH
Confidence 45555555 5544333211 1123445556666666666666666666665432 123445666666666
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH---------------HH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC---------------LI 456 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~ 456 (673)
..|++++|...++++.+..+.++.++..++.++...|++++|...++.+...... +...+.. .+
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 6667777777666666666666666777777777777777777777766654321 1111110 12
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (673)
..+...|++++|...++++.+..... +..++..+...+...|++++|...++++.+..+. +...+..++.++...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCH
Confidence 33337888999999999988754221 4677888888889999999999999998887544 677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC----------ChHhHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII----------DLASYEKVLDALLAAGK 601 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~g~ 601 (673)
++|+..++++.+ ..|+ +..++.++...|++++|...++++++..+.. ....|..++.+|...|+
T Consensus 268 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 268 EEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999998887 4455 4457778888999999999999888765443 26778899999999999
Q ss_pred hHHHHHHHHHHHH
Q 005856 602 TLNAYSILFKIME 614 (673)
Q Consensus 602 ~~~A~~~~~~~~~ 614 (673)
+++|..++++.++
T Consensus 346 ~~~A~~~~~~~l~ 358 (368)
T 1fch_A 346 SDAYGAADARDLS 358 (368)
T ss_dssp GGGHHHHHTTCHH
T ss_pred hHhHHHhHHHHHH
Confidence 9999999876543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.2e-16 Score=161.90 Aligned_cols=384 Identities=11% Similarity=-0.015 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEK--------NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF-----D 261 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 261 (673)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556777777777777777777777765431 11123456677777777777777777777665431 0
Q ss_pred -C-CCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHH---hccCChHHHHHHHHHHHhCCCC
Q 005856 262 -V-KPNAVTYTALLPGLCD--AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQ---CKSGHLNAAADVLKAMIRLSIP 334 (673)
Q Consensus 262 -~-~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~ 334 (673)
. .....++.....++.. .+++++|...|++.++. .|+++..+..+..++ ...++.+.|+..+++.++.+ +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1123444444434333 34566666666666653 454555555544442 23345555666666555543 3
Q ss_pred CChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 335 TEAGHYGILIENFCKA----EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
.+...+..+...+... |++++|.+.++++.... +.+...+..+...+...|+++.|...+++..+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3334444444444332 34455555555554332 1233445555555555666666666666555555
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.+..++..+..+|...+.... ... .... .......+.++.|...+++..+.. +.+...+..+
T Consensus 278 p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~~------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENGM------YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhh---------hHH-HHHH------HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 5555555555544432111000 000 0000 000111223567778888777643 3445677788
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCCh
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKILE-ALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (673)
...+...|++++|...|+++++..+.+... .+..+.. .+...|++++|+..+++.++ +.|+.... .+..
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~ 412 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMK 412 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHH
Confidence 888889999999999999988875543221 2222332 23467889999999998888 66664322 1223
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+..++++++..+|. +...|..++.+|...|++++|++.++++++.+
T Consensus 413 ~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456667777776644 56677889999999999999999999998854
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.4e-17 Score=164.41 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=217.3
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+..+...+.+.|++++|...|+++.+..+.+..++..++.++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688889999999999999999999999999999999999999999999999999999998864 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCch-h----------hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPAS-S----------LFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKIL 526 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 526 (673)
|...|++++|...++++.+.. |+. . .+..+...+...|++++|..+++++.+..+.. +...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998743 332 2 22334678899999999999999999985542 688899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 527 EALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
.++...|++++|++.++++.+ ..|+ +..++.++...|++++|+..++++++..+. +...+..++.+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 999999999999999999988 4455 456788888999999999999999998654 477788999999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 603 LNAYSILFKIMEKGGV-----------TDWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 603 ~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
++|++.++++++.... .....+..+..++...|+.+.+..+.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999874311 125677889999999999998876653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.3e-17 Score=161.73 Aligned_cols=261 Identities=11% Similarity=-0.021 Sum_probs=188.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHh
Q 005856 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (673)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (673)
...+..+...+.+.|++++|+..|+++++.. + .+..++..+..++...|++++|...|+++.+..+.+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 135 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD----P-----GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----c-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 3446666667777777777777777776543 1 245567777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cch
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD-----------ADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PAS 484 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 484 (673)
+..++.+|...|++++|...++.+.+.. |+ ...+..+...+...|++++|...++++.+.... ++.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 8888888888888888888887776632 22 222334577788888888888888888875421 156
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV 560 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~ 560 (673)
.++..+...+...|++++|...++++.+..+. +...|..++.+|...|++++|+..++++.+ ..|+ +..++.+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence 77888888888888889998888888887554 677888888888888999999988888887 4455 4457777
Q ss_pred HHccCChHHHHHHHHHHhcCCCCC-----------ChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCII-----------DLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
+...|++++|...++++++..+.. ....|..++.++...|+.+.|.+..++
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888899999999998888764331 256788999999999999999888766
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.7e-17 Score=157.59 Aligned_cols=290 Identities=13% Similarity=0.126 Sum_probs=135.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
..+...|+.++|.++++.+ +.+.+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++
T Consensus 11 ~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 3556778899999999988 22359999999999999999999999653 4777999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (673)
++|...++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877763 4667889999999999999999988774 367779999999999999999999999977
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (673)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (673)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ..++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence 478999999999999999999999882 7899999999999999999996655432 23444
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhcc--CChHHHHHHHHHHHhCCCCC------Chhh
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS--GHLNAAADVLKAMIRLSIPT------EAGH 339 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~ 339 (673)
....++..|.+.|.++++..+++..+.. ++.....|+.+.-.|++- ++..+.++.|..- .++++ +...
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 4557888999999999999999998764 455778888887777764 3444444444322 12233 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 340 YGILIENFCKAEMYDRAIKLLDKL 363 (673)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~ 363 (673)
|..++..|.+.++++.|....-.-
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhchHHHHHHHHHhC
Confidence 888888888888888887755443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-15 Score=156.44 Aligned_cols=348 Identities=12% Similarity=0.014 Sum_probs=235.0
Q ss_pred HHhHHHHHHHHhccCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCC
Q 005856 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRL--------SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (673)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (673)
...|+.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++++........
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666666666666666666655431 113345667888888889999999998888887644221111
Q ss_pred CCCCCchhhHHHHHHHHHc--cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCC
Q 005856 374 STLDMEASSYNPMIQHLCH--NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH---SKEGNPDSAFEIVKIMGRRGVPRD 448 (673)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~ 448 (673)
.......++.....++.. .+++++|...|++..+..|.++..+..+..++ ...++.++|++.+++..+.+ +.+
T Consensus 131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 111223455555555544 45799999999999999888888887777664 44678889999999888753 235
Q ss_pred HHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005856 449 ADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAK 524 (673)
Q Consensus 449 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 524 (673)
...+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 6666666655544 467789999999988753 345677888899999999999999999999998665 6777777
Q ss_pred HHHHHHcC-------------------CCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 525 ILEALLMR-------------------GHVEEALGRIDLMMQS-GSV-PNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 525 l~~~~~~~-------------------g~~~~A~~~~~~~~~~-~~~-p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
++.+|... +.+++|+..+++..+. +.. ..+..++..+...|++++|+..|+++++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 77666432 2357788888887772 222 22667888999999999999999999998665
Q ss_pred CCh--HhHHHHHHH-HHhcCChHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHhcCCc
Q 005856 584 IDL--ASYEKVLDA-LLAAGKTLNAYSILFKIMEKG-----------------------GVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 584 ~~~--~~~~~l~~~-l~~~g~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+.. ..+..++.. +...|++++|++.++++++-. .+.++.++..++.+|...|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 432 233445543 457899999999999887642 234566788899999999999
Q ss_pred chHHHHHHHHHhhhcc
Q 005856 638 KQADILSRMIRGEMSR 653 (673)
Q Consensus 638 ~~a~~~~~~~~~~~~~ 653 (673)
++|....++..+.++.
T Consensus 447 ~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 447 QQADEDSERGLESGSL 462 (472)
T ss_dssp C---------------
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9998877776655533
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.2e-16 Score=155.08 Aligned_cols=260 Identities=10% Similarity=0.025 Sum_probs=219.2
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
+...+......+...|++++|..+++++.+..+.+..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445677888899999999999999999999988899999999999999999999999999998863 3478899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV--------------ME-SLFEDGRVQTASRVMKSMVEKGVKENLDLV 522 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 522 (673)
+...|++++|...++++.+.. |+ ...+..+ .. .+...|++++|..+++++.+..+. +...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 999999999999999999753 33 2333332 22 377889999999999999998655 78889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
..++..+...|++++|++.++++.+ ..|+ +..++..+...|++++|...++++++..+. +...+..++.++..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999988 3454 455778888999999999999999997654 56678899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCcchHHHHHH
Q 005856 599 AGKTLNAYSILFKIMEKGGVT-----------DWKSSDKLIAGLNQEGNTKQADILSR 645 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (673)
.|++++|.+.+++++...... ....+..+..++...|+.++|..+.+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998854321 46677889999999999999977654
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.6e-17 Score=156.00 Aligned_cols=400 Identities=13% Similarity=0.088 Sum_probs=145.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEK 217 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 217 (673)
+.|+.++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456667777776666 22236667777777777777777776442 355566666666666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66555542 2345566666677777777666665553 355556666666666666666666666644
Q ss_pred CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC
Q 005856 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD 377 (673)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 377 (673)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ .
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------------~ 204 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------------V 204 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------------T
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------------H
Confidence 24666666666666666666666665 24556666666666666666663333221 1
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC------CHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPR------DAD 450 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~ 450 (673)
..+.....++..|.+.|.+++|..+++......+.....|+.+.-+|++- ++++..+.++.... .+++| +..
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222334556666666666666666666655555555666665555553 23333333333322 12222 234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
.|..+.-.|...++++.|.. .|.++ +|+...-..+.+...+.. +.+.|...+..|.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~-------------------n~elyYkai~fyl 339 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVA-------------------NVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCS-------------------STHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchh-------------------HHHHHHHHHHHHH
Confidence 45555555555555555543 22221 122111111122222222 3444444444444
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 531 MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
+....++.-+-..+. .+-|....+..+.+.|.+.-+..+++.....+ ...+-..+-+.|..-.+++. ++
T Consensus 340 --~~~p~~l~~ll~~l~--~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~----lr 408 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLS--PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA----LR 408 (449)
T ss_dssp --HHCGGGHHHHHHHHG--GGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH----HH
T ss_pred --hcCHHHHHHHHHHHH--hccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHH----HH
Confidence 111222222222222 22334445555566777777777776444432 34445566777788888876 45
Q ss_pred HHHHcCCCCCHHH
Q 005856 611 KIMEKGGVTDWKS 623 (673)
Q Consensus 611 ~~~~~~~~~~~~~ 623 (673)
..++.-+..|...
T Consensus 409 ~si~~~~nfd~~~ 421 (449)
T 1b89_A 409 TSIDAYDNFDNIS 421 (449)
T ss_dssp HHHHHCCCSCHHH
T ss_pred HHHHHhcCcCHHH
Confidence 5555444455544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=8.4e-17 Score=156.22 Aligned_cols=262 Identities=13% Similarity=0.030 Sum_probs=181.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHH
Q 005856 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+..+...+...|++++|+.+|+++++.. + .+...+..+..++...|++++|...++++.+..+.+..++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----P-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 34445555666666666666666665432 1 13445555666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICL--------------IE-SYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
.+...+...|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+.. +.+
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 6777777777777777777666654211 22222222 22 3667788888888888887653 335
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLS 559 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 559 (673)
...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++.+ ..|+ +..++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 677778888888888888888888888887544 677788888888888999999988888877 3444 345677
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCC-----------ChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCII-----------DLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+...|++++|...++++++..+.. ....+..++.++.+.|++++|.+++++.++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7778899999999998888776542 466778899999999999999999876543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=4e-16 Score=147.18 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
..++..+...+...++.+.|...++++...+ |.++..+..+..++...|++++|.+.++. +.+...+..++.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 3344444444444444444444444444332 33444444444444444555554444443 234444444444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhH---HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLF---RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
.+.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.++.++.+.|+
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC
Confidence 4445555555555554444432 222111 1111222233445555555555544422 244444444455555555
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH-HHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA-AVKLLDFCLGRD 581 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~-A~~~~~~~~~~~ 581 (673)
+++|.+.++++++ ..|+ +..++..+...|+..+ +..+++++++.+
T Consensus 216 ~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 216 WEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5555555554444 2232 2223333444444433 334444444443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=5.9e-16 Score=145.99 Aligned_cols=249 Identities=12% Similarity=0.132 Sum_probs=150.7
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 207 NRFKKMDEAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (673)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 284 (673)
...|++..|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3456666666665554332 1221 2334455666666666666654433 1 24455566666666666666667
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (673)
|.+.+++++..+..|++...+..+..++...|++++|+..+++ +.+...+..++..|.+.|++++|.+.|++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7766666666554555666666666666677777777766665 3455666666666777777777777777765
Q ss_pred HchhccCCCCCCCCchh---hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 005856 365 EKEIILRPQSTLDMEAS---SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG 441 (673)
Q Consensus 365 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 441 (673)
+.. |+.. .....+..+...|++++|..+|+++.+..|.++..++.+..++...|++++|...++++.
T Consensus 158 ~~~----------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 158 DQD----------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHC----------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhC----------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 432 2211 111122333345677777777777777666677777777777777777777777777766
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChHH-HHHHHHHHHHc
Q 005856 442 RRGVPRDADAYICLIESYLRKGEPAD-AKTALDSMIED 478 (673)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~ 478 (673)
... +-++.++..++..+...|+.++ +.++++++.+.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 643 2356667777777777777654 45666666653
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=3.3e-15 Score=150.68 Aligned_cols=345 Identities=10% Similarity=0.072 Sum_probs=153.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 005856 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA---DDALRIFDEMKSFDVKPNAVTYTALLPGLCDA 279 (673)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 279 (673)
...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344445566666666666655543 233333444444445555 5666666655532 333344444433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005856 280 G-----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL---NAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (673)
Q Consensus 280 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (673)
+ ++++|...|++..+.+ +...+..+...|...+.. ..+...+......| ++.....+...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 3 5566666666666543 223455555555544332 22333333333322 2334445555555555
Q ss_pred CHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC---CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhc-
Q 005856 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG---QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE- 427 (673)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 427 (673)
.++.+........+.. .. .++..+..+...|...| +.++|...|++..+.++++...+..+..+|...
T Consensus 156 ~~~~~~~~a~~~~~~a----~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 156 TYDQHLDDVERICKAA----LN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp CGGGGHHHHHHHHHHH----TT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred CcccCHHHHHHHHHHH----Hc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444333322222111 11 12225555555565566 666666666666666666665555555555443
Q ss_pred ---CChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC---
Q 005856 428 ---GNPDSAFEIVKIMGRRGVPRDADAYICLIES-Y--LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG--- 498 (673)
Q Consensus 428 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 498 (673)
+++++|..+|+... . -++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 46666666666655 2 233444444444 2 23555666666666655543 3333344444443 33
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChH
Q 005856 499 --RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTI 568 (673)
Q Consensus 499 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~ 568 (673)
++++|..+|++.. . -+...+..+...|.. ..++++|+..+++..+.|.......+...|.. ..+..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHH
Confidence 5566666655554 2 134444445544443 22555555555555554433333344444432 23555
Q ss_pred HHHHHHHHHhcCC
Q 005856 569 AAVKLLDFCLGRD 581 (673)
Q Consensus 569 ~A~~~~~~~~~~~ 581 (673)
+|..+++++.+.+
T Consensus 376 ~A~~~~~~A~~~g 388 (452)
T 3e4b_A 376 NAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC
Confidence 5555555555544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=8.7e-15 Score=131.76 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...+..+...+.+.|++++|...+++.++.. +.+...+..+...+...|++++|+..++++++.++. +...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3344444444444444444444444444321 122333444444444444444444444444444332 34444444444
Q ss_pred HHcC-----------CCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 529 LLMR-----------GHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 529 ~~~~-----------g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+... |++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++.+ .++..+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 4444 555555555555554 3333 2234444445555555555555555544 3444445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 005856 594 DALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADIL 643 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (673)
.+|...|++++|++.++++++.. +.+...+..++.++...|++++|...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 55555555555555555555442 22344444455555555555555433
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=7.7e-17 Score=166.96 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005856 162 HTYNVMLWGFFLSLKLETAIRFFEDMKS---RGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMI 238 (673)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 238 (673)
.||+++|.+|++.|++++|..+|+.|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555544332 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 239 KGYVAVER-ADDALRIFDEMKSFDVKPNAVTYTALLP 274 (673)
Q Consensus 239 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (673)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555544 2444555555555555555555554443
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.8e-13 Score=128.52 Aligned_cols=222 Identities=9% Similarity=-0.050 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (673)
.++..+...+...|++++|...|++..+ +.++.++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444455555555555555555555554 2333445555555555 555555555555555443 444555555
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 457 ESYLR----KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555 555555555555555432 33444444444444 555555555555555543 33344444444
Q ss_pred HHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh--
Q 005856 529 LLM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-- 598 (673)
Q Consensus 529 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 598 (673)
|.. .+++++|+..+++..+.+.......+...+.. .+++++|..+++++++.++ ...+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 444 45555555555554443221122334444444 4555555555555554432 3333444555554
Q ss_pred --cCChHHHHHHHHHHHHcC
Q 005856 599 --AGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 599 --~g~~~~A~~~~~~~~~~~ 616 (673)
.|++++|++.++++.+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 455555555555554443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.5e-13 Score=129.20 Aligned_cols=229 Identities=12% Similarity=-0.050 Sum_probs=197.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhh
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGEPADAKTALDSMIEDGHSPASSL 486 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 486 (673)
+.++.++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...+++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778889999999999999999999999884 366788889999999 999999999999999865 6678
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005856 487 FRSVMESLFE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSVPNFDSLL 558 (673)
Q Consensus 487 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 558 (673)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .|++++|++.+++..+.+.......+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8888888988 999999999999999985 67888889999999 999999999999999866322245677
Q ss_pred HHHHc----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 559 SVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAG 630 (673)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (673)
..+.. .+++++|..+++++++.+ +...+..++.+|.. .|++++|++.++++.+.+. ...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 77777 899999999999999875 45677789999999 9999999999999998853 6677789999
Q ss_pred HHh----cCCcchHHHHHHHHHhhhccc
Q 005856 631 LNQ----EGNTKQADILSRMIRGEMSRG 654 (673)
Q Consensus 631 ~~~----~g~~~~a~~~~~~~~~~~~~~ 654 (673)
|.. .++.++|....+...+.++..
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999 999999988888777777554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=3e-14 Score=134.00 Aligned_cols=244 Identities=11% Similarity=0.055 Sum_probs=168.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIESY 459 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 459 (673)
.+......+...|++++|...++++.+..+.++.++..+..++...|++++|...++.+.+....+ ....|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 455566777788888888888888888777777788888888888888888888888887732111 233477788888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..+. +...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887643 234567777778888888888888888888776443 5666666763444455888888
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHccCC---hHHHHHHHHHHhcCC---CCCC----hHhHHHHHHHHHhcCChHHH
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGK---TIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~l~~~g~~~~A 605 (673)
+.++++.+ ..|+ +..++.++...|+ +++|...++++++.. +.++ ...|..++..|...|++++|
T Consensus 163 ~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888777 4455 2234555555566 777888877777652 2111 14566778888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 606 YSILFKIMEKGGVTDWKSSDKLIAG 630 (673)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (673)
.+.++++++.. +.+......+...
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 88888887754 2344444444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-14 Score=135.43 Aligned_cols=221 Identities=11% Similarity=0.081 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHhHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRD----ADAYIC 454 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 454 (673)
..+..+...+...|++++|...|+++.+.. .++.++..+..++...|++++|...++.+.+... .++ ..++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 456667777778888888888888887777 7777788888888888888888888877765321 111 467777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+...+...|++++|...++++.+.. |+. ..+...|++++|...++++....+. +...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 7778888888888888888877643 442 2355567777888888777776433 45566677777777788
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILF 610 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~ 610 (673)
+++|+..++++.+ ..|+ +..++..+...|++++|...++++++..+. +...|..++.++.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888877777776 3333 344666666777777777777777776543 35556677777777777777777777
Q ss_pred HHHHc
Q 005856 611 KIMEK 615 (673)
Q Consensus 611 ~~~~~ 615 (673)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.6e-14 Score=129.98 Aligned_cols=198 Identities=20% Similarity=0.177 Sum_probs=94.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP 414 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 414 (673)
++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...+++..+..|.++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN---------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344444445555555555555555555554322 11334444555555555555555555555555555555
Q ss_pred HhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 005856 415 VAFNNLIRGHSKE-----------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (673)
Q Consensus 415 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 483 (673)
..+..+..++... |++++|...++...+.. +.+...+..+..++...|++++|+..+++.++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 5555555555555 55555555555555432 1134455555555555555555555555555443 34
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005856 484 SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (673)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (673)
...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|+..+++.
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444555555555555555555555555554433 4444455555555555555555555443
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=1.9e-11 Score=127.06 Aligned_cols=450 Identities=12% Similarity=0.098 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC---hHHHHHH
Q 005856 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK---MDEAEKL 218 (673)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~ 218 (673)
..+.+..|++.+..+ +-|..+|..++..+...+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344454555555543 458889999999888888999999999998877 45567788888888888888 9999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHc--------
Q 005856 219 FAEMKEKN-IEPTVISYTTMIKGYVAVERA--------DDALRIFDEMKS-FDV-KP-NAVTYTALLPGLCD-------- 278 (673)
Q Consensus 219 ~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~-------- 278 (673)
|++..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99988753 137888888877766655543 334467766553 454 44 34566666654432
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCc-HHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005856 279 -AGKMVEVQKVLREMVERYIPPKD-NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRA 356 (673)
Q Consensus 279 -~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 356 (673)
.++.+.+..+|+.++.. +..+ ..+|......-...+. ..+..++.+ ...+++.|
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~A 261 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHH
Confidence 23456677788777752 2211 1222222111110000 001111111 01123334
Q ss_pred HHHHHHHHHchhccC---CC-------CCCCC-------chhhHHHHHHHHHccC-------CHhHHHHHHHHHHHcCCC
Q 005856 357 IKLLDKLVEKEIILR---PQ-------STLDM-------EASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVL 412 (673)
Q Consensus 357 ~~~~~~~~~~~~~~~---~~-------~~~~~-------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~ 412 (673)
...+..+........ +. ..+++ ....|...+..--..+ ..+.+..+|++++...+.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 444443322110000 00 00010 1134555554433322 134466789999998888
Q ss_pred CHHhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG---------HSP 482 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~ 482 (673)
.+..|...+..+...|+.++|. .+|+..... .+.+...|..++....+.|+++.|..+|+++++.. ..|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999997 999999874 45577778888999999999999999999998631 013
Q ss_pred c------------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhC-
Q 005856 483 A------------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQS- 548 (673)
Q Consensus 483 ~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~- 548 (673)
+ ..+|...+....+.|+.+.|..+|.++.+.........|...+..-.+.+ +++.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1 23677777777888999999999999988722223445544444444544 589999999988873
Q ss_pred CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCC--ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 005856 549 GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (673)
Q Consensus 549 ~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 618 (673)
+..|. +..++......|+.+.|..+|++++...+.+ ....|...+.--.+.|+.+.+.++.+++.+..+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 22233 2345666667899999999999999986532 2455666666667899999999999999987543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=2.3e-14 Score=144.46 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=128.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHhhcccCCCCCCHHHHHHHHHH
Q 005856 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKL---NHARCILLDMPKKGVQWDEDMFEVLIES 100 (673)
Q Consensus 24 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~ 100 (673)
..+...+.+.|++++|++.|+.+.+.+ ++.++..+..++...|++ ++|..+|+...+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 445667777888888888888887654 334455566666667777 7888888777653 44455555554
Q ss_pred HHhcC-----CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005856 101 YGKKG-----IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMM---AKRYFNKMLSEGIEPTRHTYNVMLWGFF 172 (673)
Q Consensus 101 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (673)
+...+ ++++|..+|++..+.|. ...+..|...|...+.... +...+......| +...+..+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44443 66778888887777542 2356666666665544332 333333333322 2233444455555
Q ss_pred hcCCHH----HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 005856 173 LSLKLE----TAIRFFEDMKSRGISLDVVTYNTMINGYNRFK---KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV- 244 (673)
Q Consensus 173 ~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 244 (673)
..+.++ .+..++...... +...+..+..+|...| +.++|.+.|+...+.|. ++...+..+...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC
Confidence 544333 233333332222 2225555555555555 55666666666555542 2333334444444333
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccC--
Q 005856 245 ---ERADDALRIFDEMKSFDVKPNAVTYTALLPG-L--CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG-- 316 (673)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 316 (673)
+++++|+.+|++.. . -+...+..+... + ...+++++|...|++..+.+ +......+..+|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 45555655555554 2 233333333333 2 23455555555555555433 3444444444444 23
Q ss_pred ---ChHHHHHHHHHHH
Q 005856 317 ---HLNAAADVLKAMI 329 (673)
Q Consensus 317 ---~~~~a~~~~~~~~ 329 (673)
+.++|...|++..
T Consensus 299 ~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV 314 (452)
T ss_dssp SCCCHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5555555555444
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=7e-14 Score=136.18 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=200.9
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIES 458 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (673)
...|..+...+...|++++|+..+++++...|.+..+|+.+..++...|+ +++|+..++++...+. -+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 34677778888899999999999999999999999999999999999996 9999999999998643 378899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCHHH
Q 005856 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM-RGHVEE 537 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 537 (673)
+...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.++. +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999854 346778889999999999999999999999999776 78899999999998 666577
Q ss_pred H-----HHHHHHHHhCCCCCC----HHHHHHHHHccC--ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC------
Q 005856 538 A-----LGRIDLMMQSGSVPN----FDSLLSVLSEKG--KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG------ 600 (673)
Q Consensus 538 A-----~~~~~~~~~~~~~p~----~~~~~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g------ 600 (673)
| ++.+++.+. ..|+ +..+..++...| ++++|++.++++ +.++ .+...+..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccc
Confidence 7 588888888 6676 345666777777 689999999877 4443 25677789999999875
Q ss_pred ---ChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 005856 601 ---KTLNAYSILFKI-MEKGGVTDWKSSDKLIAGLN 632 (673)
Q Consensus 601 ---~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 632 (673)
.+++|+++|+++ .+. ++.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHH
Confidence 258999999998 443 3334455555555544
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=161.06 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005856 93 MFEVLIESYGKKGIVQESVKIFDIMKQ---LGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (673)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 169 (673)
+|+++|.+|++.|++++|..+|++|.+ .|+.||+.+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 445555555555555555555544432 24445555555555555555555555555555555555555555555555
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 170 GFFLSLK-LETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 170 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
++++.|+ .+.|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 5554444 2444455555555555555555544443
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.6e-14 Score=129.64 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--C----HhhH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVER--S----VKSY 129 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~ 129 (673)
...+..++..+...|++++|...|+.+.+.. .+..++..+..+|...|++++|...++++.+..... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566667777777777777777777776665 466677777777777777777777777776542111 1 4566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF 209 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 209 (673)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 67777777777777777777777664 2332 234445666777777777666522 2455566666667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 210 KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVL 289 (673)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 289 (673)
|++++|...|++..... +.+...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777777777766543 2245666666666667777777777776666542 334556666666666666666666666
Q ss_pred HHHHH
Q 005856 290 REMVE 294 (673)
Q Consensus 290 ~~~~~ 294 (673)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.8e-13 Score=127.27 Aligned_cols=241 Identities=12% Similarity=0.065 Sum_probs=140.4
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhh
Q 005856 303 SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASS 382 (673)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (673)
..+......+...|+++.|+..|+++.+.. +.+...+..+...|...|++++|+..++++++. + .........
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----V-NATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----S-CTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----c-CchhHHHHH
Confidence 344555566666666777777776666653 334445666666677777777777777776541 1 111112233
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
|..+...+...|++++|...+++..+..+.++.++..+..+|...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 56666667777777777777777776666666677777777777777777777777666542 23455555555233333
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHcC
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKG-VKEN------LDLVAKILEALLMR 532 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 532 (673)
+++++|...++++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 46777777777666532 2224445555555555555 556666666665541 1111 13455566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH
Q 005856 533 GHVEEALGRIDLMMQSGSVPNF 554 (673)
Q Consensus 533 g~~~~A~~~~~~~~~~~~~p~~ 554 (673)
|++++|++.++++.+ ..|+.
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~ 254 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTN 254 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTC
T ss_pred CCHHHHHHHHHHHHh--cCccH
Confidence 666666666666665 44543
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.7e-14 Score=132.89 Aligned_cols=130 Identities=19% Similarity=0.053 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
.++..+...+...|++++|...|+++.+..+.++.++..++.++...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555432 123445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
..|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555555555555422 33222222223333444555555555444443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=7.4e-14 Score=131.50 Aligned_cols=247 Identities=12% Similarity=-0.040 Sum_probs=169.0
Q ss_pred hccCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHH
Q 005856 313 CKSGHLNAAADVLKAMIRLSI---PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQH 389 (673)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (673)
...|++++|+..++++.+... +.+..++..+...+...|++++|+..|+++++.. + .+...+..+...
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~-----~~~~~~~~la~~ 86 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----P-----DMPEVFNYLGIY 86 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C-----CCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----C-----CcHHHHHHHHHH
Confidence 345667777777777776531 1234566677777888888888888888876643 1 245677778888
Q ss_pred HHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 005856 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (673)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 469 (673)
+...|++++|...++++.+..+.++.++..+..+|...|++++|...++.+.+.. |+.......+..+...|++++|.
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHH
Confidence 8888888888888888888877778888889999999999999999998888743 33333444445556778999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 470 TALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE---NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..+++..... +++... ..++..+...++.++|...++++.+..+.. +...+..++.++...|++++|+..++++.
T Consensus 165 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998877643 233333 346666777888888888888876542211 13556667777777777777777777776
Q ss_pred hCCCCCC-HHHHHHHHHccCChHHHHHHH
Q 005856 547 QSGSVPN-FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 547 ~~~~~p~-~~~~~~~~~~~g~~~~A~~~~ 574 (673)
+ ..|+ +.....++...|++++|++.+
T Consensus 243 ~--~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 A--NNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--TCCTTCHHHHHHHHHHHHHHHC----
T ss_pred h--CCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 6 3453 444455555666666665554
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=4e-11 Score=124.76 Aligned_cols=453 Identities=9% Similarity=0.061 Sum_probs=258.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC---HHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI---VQESV 111 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~ 111 (673)
...+.+..|+..+..+ |.+...|..++..+.+.+.++.+..+|+.++.. ++.....|...+..-.+.++ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445566677777776 789999999999998889999999999998876 45578888888888888888 99999
Q ss_pred HHHHHHHHcC-CccCHhhHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH-------
Q 005856 112 KIFDIMKQLG-VERSVKSYDALFKLILRRGRY--------MMAKRYFNKMLS-EGI-EPT-RHTYNVMLWGFF------- 172 (673)
Q Consensus 112 ~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------- 172 (673)
.+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999988753 137888888877766665543 334467776554 355 443 457776665443
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005856 173 --LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDA 250 (673)
Q Consensus 173 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 250 (673)
..++++.+..+|+.+.......-..+|......-...+. ..+.+++.+.. .+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHH
Confidence 234567788888888854222112333222211111011 01111111100 011112
Q ss_pred HHHHHHHHh--CCC----C-----------C-----C---HHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCC
Q 005856 251 LRIFDEMKS--FDV----K-----------P-----N---AVTYTALLPGLCDAG-------KMVEVQKVLREMVERYIP 298 (673)
Q Consensus 251 ~~~~~~~~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~ 298 (673)
...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++++.. .
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~ 339 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--V 339 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--c
Confidence 222211110 000 0 0 0 112333332222111 123344556666553 3
Q ss_pred CCcHHhHHHHHHHHhccCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchh-------cc
Q 005856 299 PKDNSVFMKLLGVQCKSGHLNAAA-DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI-------IL 370 (673)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~ 370 (673)
|..+..|...+..+...|+.+.|. .+|+..... +|.+...+-..+...-+.|+++.|..+|+.+++... ..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446666666666666666666665 666666653 344455555566666666677777777666665310 00
Q ss_pred CCC-----CCCC-CchhhHHHHHHHHHccCCHhHHHHHHHHHHHc-CCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 005856 371 RPQ-----STLD-MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-GVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGR 442 (673)
Q Consensus 371 ~~~-----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 442 (673)
.+. .... .....|...+....+.|..+.|..+|.++.+. .......|...+..-.+. ++.+.|..+|+...+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 010 0000 12235666666666777777777777777765 333334444333333333 347777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 005856 443 RGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (673)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (673)
. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.+++.+.-++
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4 33456666677777777777777777777777643211 2345666666666677777788888877777444
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.5e-13 Score=129.89 Aligned_cols=221 Identities=10% Similarity=0.050 Sum_probs=121.4
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK-LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
++...|++++|+..|+.+++.+ |.+..+|..+..++...|+ +++|+..|+++++..+. +..+|..+..++...|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCH
Confidence 5555566666666666666655 5556666666666666664 66666666666555433 555666666666666666
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----H
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL-SLKLETA-----I 181 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~ 181 (673)
++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..++| +
T Consensus 183 ~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 66666666666544 3445556666666666666666666666665543 2245555555555555 3433444 3
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHH
Q 005856 182 RFFEDMKSRGISLDVVTYNTMINGYNRFK--KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE---------RADDA 250 (673)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------~~~~a 250 (673)
..+++....... +...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+...|.+.| ..++|
T Consensus 261 ~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A 337 (382)
T 2h6f_A 261 QYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337 (382)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555555544322 4455555555555555 355555555554 22 1223444555555555442 13555
Q ss_pred HHHHHHH
Q 005856 251 LRIFDEM 257 (673)
Q Consensus 251 ~~~~~~~ 257 (673)
+.+|+++
T Consensus 338 ~~~~~~l 344 (382)
T 2h6f_A 338 LELCEIL 344 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1e-12 Score=119.29 Aligned_cols=202 Identities=10% Similarity=-0.037 Sum_probs=91.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVME 492 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 492 (673)
++.++..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34444555555555555555555555544432 1234444445555555555555555555544422 123334444444
Q ss_pred HHhcc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHH
Q 005856 493 SLFED-GRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 493 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A 570 (673)
.+... |++++|...++++.+.+..| +...+..++.++...|+ +++|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------------------~~~A 132 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--------------------------------FGLA 132 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--------------------------------HHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--------------------------------HHHH
Confidence 44444 55555555555444411111 13334444444444444 4444
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (673)
...++++++..+. +...+..++.++.+.|++++|.+.+++++..........+..+...+...|+.++|....+.+.+
T Consensus 133 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444444443322 23334445555555555555555555554432212333333344444455555555444444443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=6.8e-14 Score=140.19 Aligned_cols=302 Identities=15% Similarity=0.038 Sum_probs=163.1
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCC
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTL 376 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 376 (673)
....+......+...|++++|...|+++.+.. +.+ ..++..+...|...|++++|...++++++.... .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~ 82 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----IGD 82 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh----ccc
Confidence 33444455555556666666666666655543 122 133444555555555555555555555433211 000
Q ss_pred CCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHh
Q 005856 377 DMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDADA 451 (673)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~ 451 (673)
. +....++..+...|...|++++|...++.+.+. +. .....+
T Consensus 83 ~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 83 Q---------------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp H---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred c---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 0 111234444555555555555555555444331 00 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHH
Q 005856 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRV 506 (673)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 506 (673)
+..+...+...|+ +++|...+++..+. +..| ...++..+...+...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4555555555555 55555555554321 1011 123455556666667777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC----HHHHHHHHHccCChHHHHHH
Q 005856 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN----FDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~~~~~~g~~~~A~~~ 573 (673)
++++.+.... ++ ...+..++.++...|++++|+..+++..+. +..+. +..++..+...|++++|..+
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 7766654111 11 225566677777777777777777766541 11111 23455666677888888888
Q ss_pred HHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhcCCcchH
Q 005856 574 LDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG----G-VTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
++++++..... ....+..++.+|.+.|++++|.+.++++++.. . .....++..+...+...|+...+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 77777542111 14566788888999999999999988877631 1 11244555677788888876443
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.3e-12 Score=121.07 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=112.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL 494 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (673)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555555555555555555555555432 2244555555555555556666665555555432 22344555555555
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
...|++++|..+++++.+.+..| +...+..++.++...|++++|++.++++.+ ..|+ +..++..+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666655521222 344455566666666666666666666655 2233 2345555666677777
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|..+++++++..+. +...+..++..+...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777766665432 44555667777777777777777777777654
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3.5e-13 Score=124.17 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005856 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL 494 (673)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (673)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344445555555555555555555555432 2244555555555555555555555555555432 22344555555556
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHH
Q 005856 495 FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAA 570 (673)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A 570 (673)
...|++++|..+++++.+..+. +...+..++.++...|++++|+..++++.+ ..|+ +..++..+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655433 455555666666666666666666666655 2232 23355555666777777
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 571 VKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...++++++..+. +...+..++.++.+.|++++|.+.++++++..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777766665432 35556677777778888888888888777654
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.1e-12 Score=119.67 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++..+...|++++|...|+++.+... .+..++..+...|...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34555666666666666666666666655432 245566666666666666666666666665543 2345556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 005856 136 ILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE 214 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 214 (673)
+...|++++|...|+++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665421222 334455555555566666666666666555432 134555555555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005856 215 AEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (673)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (673)
|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666665555432 22444455555555555555555555555544
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.9e-12 Score=117.57 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
++.++..++.++...|++++|...++.+.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344455555555555555555555555544322 234455555555555555555555555554432 233444455555
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 005856 135 LILRR-GRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (673)
Q Consensus 135 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 212 (673)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.... +...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 55555 555555555555544211121 334444444444555555555555554443211 344444444444444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (673)
++|...++++.......+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555544444433210233334444444444444444444444443
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=2.6e-13 Score=125.07 Aligned_cols=201 Identities=17% Similarity=0.146 Sum_probs=159.2
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
.....+..+...+...|+++.|...|+++.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455677788889999999999999999999888899999999999999999999999999998763 347888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998754 346678888889999999999999999999988654 67888899999999999999
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 538 ALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
|+..++++.+ ..|+ +..++.++...|++++|...++++++..+.
T Consensus 178 A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999888 3444 445777888999999999999999998654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=1.1e-13 Score=139.06 Aligned_cols=271 Identities=11% Similarity=0.047 Sum_probs=209.6
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHh
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADA 451 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 451 (673)
..+..+...+...|++++|...|+++.+..+.++ .++..+...|...|++++|...++++.+. + .+.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455567788899999999999999999886665 47889999999999999999999987652 1 1223467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CchhhHHHHHHHHhccCC-----------------HHHHHHHHHH
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIED----GHS-PASSLFRSVMESLFEDGR-----------------VQTASRVMKS 509 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 509 (673)
+..+...|...|++++|...+++..+. +-. ....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999988753 111 123467778888999999 9999999998
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHHHH
Q 005856 510 MVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 510 ~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~ 576 (673)
..+. +..+ ....+..+...+...|++++|+..+++..+.. ..++ +..++..+...|++++|..++++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7664 1111 23467788999999999999999999887621 1112 34577788899999999999999
Q ss_pred HhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005856 577 CLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQADILSRM 646 (673)
Q Consensus 577 ~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 646 (673)
++...+.. ....+..++.++...|++++|.+.+++++.... ......+..+..+|...|++++|....+.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88753221 145677899999999999999999999886421 11244667789999999999999777766
Q ss_pred HHhhh
Q 005856 647 IRGEM 651 (673)
Q Consensus 647 ~~~~~ 651 (673)
..+..
T Consensus 369 al~~~ 373 (411)
T 4a1s_A 369 HLQLA 373 (411)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66555
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.3e-13 Score=136.32 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=189.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCc----HHhHHHHHHHHhccCChHHHHHHHHHHHhCC--CCCC
Q 005856 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD----NSVFMKLLGVQCKSGHLNAAADVLKAMIRLS--IPTE 336 (673)
Q Consensus 263 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 336 (673)
.+....+......+...|++++|...+++++.. .|.+ ..++..+...+...|+++.|...+++..... ...+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 455667778888999999999999999999986 3434 3578888999999999999999999987632 1111
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC
Q 005856 337 ---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (673)
Q Consensus 337 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (673)
..++..+...|...|++++|+..++++++.. +..+.. ...
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~---------------------------------~~~ 126 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS----RELNDK---------------------------------VGE 126 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHTCH---------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----Hhcccc---------------------------------cch
Confidence 1234445555666666666666666664332 110000 001
Q ss_pred HHhHHHHHHHHHhcCC--------------------hhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHH
Q 005856 414 PVAFNNLIRGHSKEGN--------------------PDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADA 468 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 468 (673)
..++..+...|...|+ +++|...++..... +..| ...++..+...+...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 2244555555555555 55665555544321 1111 123566666777777777777
Q ss_pred HHHHHHHHHcCC-CCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHH
Q 005856 469 KTALDSMIEDGH-SPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEA 538 (673)
Q Consensus 469 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 538 (673)
...+++..+... .++ ..++..+...+...|++++|...++++.+.... ++ ..++..++..+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 777776654210 011 225666667777788888888887777654111 11 34566777788888888888
Q ss_pred HHHHHHHHhC----CCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHH
Q 005856 539 LGRIDLMMQS----GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 539 ~~~~~~~~~~----~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A 605 (673)
++.+++..+. +..+. +..++..+...|++++|..+++++++..... ....+..++.++...|+...+
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 8888776652 11111 2346666777888888888888877642111 144566778888888776543
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.8e-13 Score=137.40 Aligned_cols=234 Identities=13% Similarity=0.048 Sum_probs=138.6
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHh
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----G-VPRDADA 451 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 451 (673)
+..+...+...|++++|...+++..... +....++..+...|...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 3444444444455555555444443321 223344555566666666666666666554432 0 0112335
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 452 YICLIESYLRKGE-----------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 452 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
+..+...|...|+ +++|...+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666655432 1111 123555666667777777777777777
Q ss_pred HHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHccCChHHHHHHHHH
Q 005856 510 MVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS-VPN-------FDSLLSVLSEKGKTIAAVKLLDF 576 (673)
Q Consensus 510 ~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-------~~~~~~~~~~~g~~~~A~~~~~~ 576 (673)
+.+.... ++ ...+..++.+|...|++++|+..+++..+... ..+ +..++.++...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7654111 11 22566777778888888888888777665211 111 23466667778888888888888
Q ss_pred HhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 577 CLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 577 ~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++...... ....+..++.+|.+.|++++|.+.++++++..
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 77642111 13467789999999999999999999988754
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.5e-11 Score=117.41 Aligned_cols=215 Identities=8% Similarity=0.023 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHcCCCCHHhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-------EGNP-------DSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
++|..+|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678889999998888899999988888763 5776 88999999988731233567888888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCc-hh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPA-SS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL-MRGHVEEAL 539 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 539 (673)
|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.++. +...|...+.... ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998873 454 33 7888888888889999999999998887543 4455544443322 368888998
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC-CCC--ChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 540 GRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD-CII--DLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 540 ~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
.+|++.++ ..|+ +..++..+...|++++|..+|++++... ..| ....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877 3444 3445666677888888888888888863 232 4566777788888888888888888888
Q ss_pred HHcC
Q 005856 613 MEKG 616 (673)
Q Consensus 613 ~~~~ 616 (673)
++..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1e-12 Score=133.45 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=167.9
Q ss_pred CHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 005856 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP-DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (673)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 473 (673)
.++.+...++......+.+...+..+..++...|++ ++|...|+++.+.. +.+...|..+..+|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356667777776666677888999999999999999 99999999888753 2357888999999999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCHH
Q 005856 474 SMIEDGHSPASSLFRSVMESLFED---------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR--------GHVE 536 (673)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 536 (673)
+.++. .|+...+..+...+... |++++|...++++++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98874 47777888888888888 9999999999999888655 678888888888887 8888
Q ss_pred HHHHHHHHHHhCCCCC---C----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVP---N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p---~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~ 609 (673)
+|++.+++.++ ..| + +..++.++...|++++|...++++++..+. ....+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887 344 3 445777777888888888888888887654 4556667888888888888887765
Q ss_pred HH
Q 005856 610 FK 611 (673)
Q Consensus 610 ~~ 611 (673)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=6.9e-13 Score=128.95 Aligned_cols=270 Identities=13% Similarity=0.059 Sum_probs=204.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP-RDADAY 452 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~ 452 (673)
.+......+...|++++|...++++.+..+.+ ..++..+...+...|++++|...++.+... +.. ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 44556677889999999999999999987666 357889999999999999999999887542 111 225678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----hhhHHHHHHHHhccCC--------------------HHHHHHHH
Q 005856 453 ICLIESYLRKGEPADAKTALDSMIEDGH-SPA----SSLFRSVMESLFEDGR--------------------VQTASRVM 507 (673)
Q Consensus 453 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 507 (673)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999998765311 112 3367777888889999 99999999
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHH
Q 005856 508 KSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLL 574 (673)
Q Consensus 508 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~ 574 (673)
++.... +..+ ....+..+...+...|++++|++.+++..+.. ..++ +..++..+...|++++|..++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887654 2111 23467788899999999999999999887621 1111 344677778899999999999
Q ss_pred HHHhcCCCCC-C----hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCcchHHHHH
Q 005856 575 DFCLGRDCII-D----LASYEKVLDALLAAGKTLNAYSILFKIMEKGG-----VTDWKSSDKLIAGLNQEGNTKQADILS 644 (673)
Q Consensus 575 ~~~~~~~~~~-~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 644 (673)
++++...+.. + ...+..++.++...|++++|.+.+++++.... ......+..+..+|...|++++|....
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9988653221 1 45677899999999999999999999876421 112446667999999999999998777
Q ss_pred HHHHhhh
Q 005856 645 RMIRGEM 651 (673)
Q Consensus 645 ~~~~~~~ 651 (673)
+...+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 6665443
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=5.5e-13 Score=129.66 Aligned_cols=234 Identities=15% Similarity=0.042 Sum_probs=133.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC------CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHh
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRD----ADA 451 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~ 451 (673)
+..+...+...|+++.|...+++..... +....++..+...+...|++++|...++...+... .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3334444444444444444444433221 11233455555566666666666666555443100 011 235
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHH
Q 005856 452 YICLIESYLRKGE--------------------PADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRV 506 (673)
Q Consensus 452 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 506 (673)
+..+...+...|+ +++|...+++..+. +..+ ....+..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555566666666 66666666554421 1111 123455566667777777777777
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHH
Q 005856 507 MKSMVEKGVK-EN----LDLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKL 573 (673)
Q Consensus 507 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~ 573 (673)
++++.+.... ++ ...+..++..+...|++++|...+++..+.. ..++ +..++..+...|++++|..+
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7776654110 11 2356667777778888888888877766521 1111 23456666778888888888
Q ss_pred HHHHhcCCCCC-----ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 574 LDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++++++..... ....+..++.+|.+.|++++|.+.++++++..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 88777642111 14466789999999999999999999988753
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2e-11 Score=116.58 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGR-------VGKL-------NHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
++|+..|+.++... |.++.+|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78999999999886 7899999999888764 4776 889999998887312336778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCccC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERS-VK-SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLKLET 179 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 179 (673)
+.|++++|..+|+++.+.. |+ .. .|..++..+.+.|++++|..+|++..+.+ +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999988743 43 33 78888888888899999999998888764 234444443333322 2688888
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005856 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN-IEP--TVISYTTMIKGYVAVERADDALRIFDE 256 (673)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (673)
|..+|+.+.+.... +...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888765322 57777888888888888888888888888752 343 355777777777788888888888888
Q ss_pred HHhC
Q 005856 257 MKSF 260 (673)
Q Consensus 257 ~~~~ 260 (673)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=9.6e-12 Score=108.75 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (673)
...|..+...+...|++++|+..|++..+..|.++.++..+..+|...|++++|...+..+.... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666665542 22445555555566
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
...++++.|...+.+..+.. +.+...+..+...+...|++++|+..|+++++.++. +...|..++.+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666655432 233445555555566666666666666666655443 4555555666666666666666
Q ss_pred HHHHHHHh
Q 005856 540 GRIDLMMQ 547 (673)
Q Consensus 540 ~~~~~~~~ 547 (673)
+.+++.++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666555
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.1e-11 Score=108.51 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
...|..+...|...|++++|+..|++.++.. +-+...+..+...+...|++++|...+..+....+. +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3444444444445555555555555444422 122334444444444555555555555554444333 33444444444
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
+...++++.|...+++... ..|+ +..++..+...|++++|+..++++++.+|. +...|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 4455555555555554444 2232 223444444555555555555555554432 34444555555555566666
Q ss_pred HHHHHHHHHHc
Q 005856 605 AYSILFKIMEK 615 (673)
Q Consensus 605 A~~~~~~~~~~ 615 (673)
|++.++++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66655555543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1.2e-11 Score=122.63 Aligned_cols=233 Identities=10% Similarity=-0.015 Sum_probs=144.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCC--CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCC--CCCch
Q 005856 308 LLGVQCKSGHLNAAADVLKAMIRLS--IPT---EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQST--LDMEA 380 (673)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ 380 (673)
....+...|+++.|...+++..+.- .+. ...++..+...|...|+++.|+..+.++++... ..+ .....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK----EHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----hCccchHHHH
Confidence 5556677788888888888776531 111 235677788888899999999999988876542 111 11123
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD----PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PRDA 449 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~ 449 (673)
.++..+...|...|++++|...+++..+.. ..+ ..++..+..+|...|++++|...+++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 466777778888888888888888776543 111 236677777777788888887777776651 22 3335
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCC-CHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDG----HSPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKE-NLDL 521 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~ 521 (673)
.++..+...+...|++++|...+++..+.. -+.....+..+...+...|+ +++|..++++. +..| ....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 341 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 566777777777777777777777765421 11111223445555666666 55555555443 1111 1234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..++..|...|++++|...+++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666666666666666665554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=2e-12 Score=124.14 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=167.0
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHc--------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK--------GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------ 443 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 443 (673)
....++..+...+...|++++|..+++++.+. .+....++..+...|...|++++|...++.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888889999999999999999998873 3445667889999999999999999999988753
Q ss_pred C-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--
Q 005856 444 G-VPRDADAYICLIESYLRKGEPADAKTALDSMIED------GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-- 513 (673)
Q Consensus 444 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 513 (673)
+ .+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|..+++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1224567888899999999999999999998764 2222 3456777888899999999999999998875
Q ss_pred ----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCC---HHH-------HHHHHHccCChHHHH
Q 005856 514 ----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS-------GSVPN---FDS-------LLSVLSEKGKTIAAV 571 (673)
Q Consensus 514 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~---~~~-------~~~~~~~~g~~~~A~ 571 (673)
+..| ....+..++.+|...|++++|++.++++.+. ...|. ... ....+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2456778899999999999999999988762 11221 111 112222456666666
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
..++++....+ .....+..++.+|.+.|++++|.+.++++++.
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67766655432 23566778888888999999999998887753
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.2e-11 Score=122.45 Aligned_cols=235 Identities=9% Similarity=-0.042 Sum_probs=137.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CCCHHHHH
Q 005856 202 MINGYNRFKKMDEAEKLFAEMKEK----NIEP-TVISYTTMIKGYVAVERADDALRIFDEMKSF----DV--KPNAVTYT 270 (673)
Q Consensus 202 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 270 (673)
....+...|++++|...|++.... +-.+ ...++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777766542 1011 2345666667777777777777777666431 10 01124566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh-----CCCCCChhhHH
Q 005856 271 ALLPGLCDAGKMVEVQKVLREMVERY----IPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR-----LSIPTEAGHYG 341 (673)
Q Consensus 271 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 341 (673)
.+...|...|++++|...+++.++.. ..+....++..+..+|...|+++.|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66777777788888877777766531 1111224677778888888888888888888776 22133456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCC---HhHHHHHHHHHHHcCCCCHHhHH
Q 005856 342 ILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ---TGKAEIFFRQLMKKGVLDPVAFN 418 (673)
Q Consensus 342 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~ 418 (673)
.+...|...|++++|...+++.++.... .+.......+..+...+...|+ .++|..+++... ..+....++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQK----AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 8888889999999999999888654311 0111111223445555555665 444444444431 0022233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMG 441 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~ 441 (673)
.+...|...|++++|...++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556666666666666655544
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.2e-11 Score=125.44 Aligned_cols=214 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 005856 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV-QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFN 150 (673)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 150 (673)
++++...++...... +.+...+..+...|...|++ ++|...|++..+.. +.+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 23566666666666666666 66666666666543 3345566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC--------CChH
Q 005856 151 KMLSEGIEPTRHTYNVMLWGFFLS---------LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF--------KKMD 213 (673)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~ 213 (673)
+..+. .|+...+..+...+... |++++|...++++.+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 34455666666666666 6666666666666665322 456666666666666 6667
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005856 214 EAEKLFAEMKEKNIE--PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE 291 (673)
Q Consensus 214 ~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 291 (673)
+|...|++..+.... .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777776666654210 255666666666667777777777776665542 33445566666666666666666655543
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.8e-10 Score=113.62 Aligned_cols=227 Identities=10% Similarity=-0.040 Sum_probs=161.5
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHcC--CC----CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHhH
Q 005856 385 PMIQHLCHNGQTGKAEIFFRQLMKKG--VL----DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GV-PR-DADAY 452 (673)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~-~~~~~ 452 (673)
.....+...|+++.|...+++..+.. .+ ...++..+..+|...|+++.|...++...+. +. .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34455678899999999999987653 22 3457788889999999999999998887652 11 11 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 005856 453 ICLIESYLRKGEPADAKTALDSMIED----GHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVE-----KGVKENLDLV 522 (673)
Q Consensus 453 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 522 (673)
+.+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 78888899999999999999887753 1111 124566777888889999999999998887 4333 36677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCCHH----HHHHHHHccCC---hHHHHHHHHHHhcCCCCCChHhHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGS---VPNFD----SLLSVLSEKGK---TIAAVKLLDFCLGRDCIIDLASYEKV 592 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~----~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (673)
..++.++...|++++|...+++..+... .|... .+...+...++ +.+|+.++++.-. .......+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHH
Confidence 8888899999999999999988877311 23322 23344446677 7777777775211 11123455678
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 005856 593 LDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 593 ~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..|...|++++|.+.++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999988888765
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.9e-11 Score=127.50 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (673)
..+|+.+...+.+.|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|+++++.++. +...|..++.+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455555555555555555555555555432 122344555555555555555555555555555433 44555555555
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHH
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 604 (673)
|...|++++|++.|++.++ +.|+ +..++.++...|++++|+..++++++.++. ....|..++.+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555555 3343 233444445555555555555555554432 23344455555555555555
Q ss_pred HHHHHHHHH
Q 005856 605 AYSILFKIM 613 (673)
Q Consensus 605 A~~~~~~~~ 613 (673)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=7.8e-12 Score=119.97 Aligned_cols=176 Identities=11% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC------CC
Q 005856 161 RHTYNVMLWGFFLSLKLETAIRFFEDMKSR-------GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK------NI 227 (673)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 227 (673)
..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555666666666666666665542 11223444555555566666666666666555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHH
Q 005856 228 -EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM 306 (673)
Q Consensus 228 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 306 (673)
+....++..+...+...|++++|...++++.+.. +.. ..+..|....++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~-~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKV-LGKDHPDVAKQLN 157 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHH-HCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHh-cCCCChHHHHHHH
Confidence 1122334444445555555555555554443210 000 0011222334455
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 307 KLLGVQCKSGHLNAAADVLKAMIRL------S-IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVE 365 (673)
Q Consensus 307 ~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 365 (673)
.+...+...|++++|...++++.+. + .+....++..+...|...|++++|...++++++
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666666655555442 1 112234455666677777777777777777754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=2.4e-10 Score=112.82 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=94.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCC----CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCC--C----CChhhHHH
Q 005856 273 LPGLCDAGKMVEVQKVLREMVERYI----PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--P----TEAGHYGI 342 (673)
Q Consensus 273 l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 342 (673)
...+...|++++|...++++..... .+....++..+...+...|+++.|...+.+..+... . ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345567777777777777665311 111234566677777777777777777776654210 0 11345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHH-----cCCCCHHhH
Q 005856 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK-----KGVLDPVAF 417 (673)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 417 (673)
+...|...|++++|+..|+++++..... ........++..+..+|...|++++|...+++... ..+....++
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 7777788888888888887776532110 00001123445555566666666666666666555 323334455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 005856 418 NNLIRGHSKEGNPDSAFEIVKIMGR 442 (673)
Q Consensus 418 ~~l~~~~~~~~~~~~A~~~~~~~~~ 442 (673)
..+..++.+.|++++|...++...+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=5.5e-10 Score=110.13 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=138.5
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHcC--CCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CH
Q 005856 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVP--R-DA 449 (673)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~ 449 (673)
+..+...+...|+++.|...+++..... ..++ .++..+...+...|++++|...++..... +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3444445555666666666666554432 1111 23455666677777777777777665542 211 2 23
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHS--P--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVA 523 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 523 (673)
..+..+...+...|++++|...+++....... + ....+..+...+...|++++|...+++.......+ ......
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 45555667777778888887777777653211 1 12345556666777788888888887776541111 111111
Q ss_pred ----HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHccCChHHHHHHHHHHhcCCCC----CC-hHh
Q 005856 524 ----KILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI----ID-LAS 588 (673)
Q Consensus 524 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~ 588 (673)
..+..+...|++++|...+++.......+. ...+...+...|++++|...+++++..... +. ...
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223346677888888888777665322111 123556666778888888888777653211 11 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+..++.++...|++++|.+.+++++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 556788888899999999988887753
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=4.4e-11 Score=126.10 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=126.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
|.++.+++.+..+|...|++++|...|+++.+.. +-+..+|..+..+|.+.|++++|+..|++.++.. +-+...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566778888888888888888888888887753 2256778888888888888888888888887643 2235677778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~ 566 (673)
...+...|++++|++.|+++++.++. +...|..++.+|...|++++|++.|++.++ ..|+ +..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888888887655 677788888888888888888888888887 5666 3456677778888
Q ss_pred hHHHHHHHHHHhcC
Q 005856 567 TIAAVKLLDFCLGR 580 (673)
Q Consensus 567 ~~~A~~~~~~~~~~ 580 (673)
+++|.+.++++++.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877663
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.6e-10 Score=103.59 Aligned_cols=194 Identities=12% Similarity=-0.025 Sum_probs=139.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
+.++..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 456778888888888899999999999888876543677777778888888899999999998888743 2345677778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHH----H
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENL-------DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDS----L 557 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~----~ 557 (673)
...+...|++++|...++++++..+. +. ..|..+...+...|++++|++.++++++ ..|+ ... +
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 88888889999999999888887554 44 4577777888888888888888888887 5666 322 3
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+.++. ..+...++++...... +...|. .......|.+++|+..++++++..
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~~-~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLASS-NKEKYA--SEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTTT-CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHHhcccC-CHHHHH--HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33332 3344455655555422 233332 233345677888999998888764
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.2e-09 Score=107.62 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=77.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 306 MKLLGVQCKSGHLNAAADVLKAMIRL----SIP--T-EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
..+...+...|+++.|...+++.... +.+ | ....+..+...+...|++++|...+++.++.. +..+...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~ 172 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----SSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTSCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hccCcHH
Confidence 34444555555555555555554332 111 1 12334445566666777777777777665543 1111111
Q ss_pred chhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC-HHhHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---C
Q 005856 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD-PVAFN----NLIRGHSKEGNPDSAFEIVKIMGRRGVPR---D 448 (673)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 448 (673)
...++..+...+...|++++|...+++..... ... ..... ..+..+...|++++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 22344455555666666666666666554431 111 11111 12233445566666666655554322111 0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 449 ADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
...+..+...+...|++++|...+++.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112334444445555555555555444
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=8.7e-10 Score=96.24 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++..+...|++++|...++.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45667778888888889999998888877643 367778888888888888888888888887754 4566777778888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 005856 136 ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 215 (673)
+...|++++|...++++.... +.+...+..+...+...|++++|...++++..... .+...+..+..++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 34666777777777888888888888888776642 2566777777777778888888
Q ss_pred HHHHHHHHHC
Q 005856 216 EKLFAEMKEK 225 (673)
Q Consensus 216 ~~~~~~~~~~ 225 (673)
...++...+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8777776653
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=4.4e-10 Score=98.19 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=109.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
.+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 455566666777777777777777766666667777777777777777777777777766542 2356666667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGR 541 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 541 (673)
.|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 334555666666667777777777777777666433 456666666667777777777777
Q ss_pred HHHHHh
Q 005856 542 IDLMMQ 547 (673)
Q Consensus 542 ~~~~~~ 547 (673)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=7.1e-10 Score=100.62 Aligned_cols=199 Identities=12% Similarity=0.015 Sum_probs=153.7
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV-LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 456 (673)
.++..+......+...|++++|...|++..+..+ ++...+..+..++...|++++|...++...+... .+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 3557888889999999999999999999999886 8888888899999999999999999999998642 3677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCch-------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGHSPAS-------SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEA 528 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 528 (673)
.++...|++++|...+++..+.. +.+. ..+..+...+...|++++|+..|+++++.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 99999999999999999999753 2233 457777788899999999999999998874320 24667778888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCC
Q 005856 529 LLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (673)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (673)
|...|+ ..++++...+...............+.+++|+.+++++++..|.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 765553 33444444221111111222233467799999999999998754
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.4e-10 Score=109.39 Aligned_cols=223 Identities=11% Similarity=-0.004 Sum_probs=152.1
Q ss_pred ccCCHhHHHHHHHHHHHc-------C-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHhHHHHH
Q 005856 392 HNGQTGKAEIFFRQLMKK-------G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR------GV-PRDADAYICLI 456 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~ 456 (673)
..|+++.|...+++..+. . +....++..+...|...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766652 2 335667889999999999999999999988753 11 22456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIED------GH-SPASSLFRSVMESLFEDGRVQTASRVMKSMVEK------GVKE-NLDLV 522 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~ 522 (673)
..+...|++++|...+++..+. .. +.....+..+...+...|++++|..+++++.+. +..| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 223556778888899999999999999998876 1122 34567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCC----HHHHHHHHHccC------ChHHHHHHHHHHhcCCCCCC
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQS-------GSVPN----FDSLLSVLSEKG------KTIAAVKLLDFCLGRDCIID 585 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~----~~~~~~~~~~~g------~~~~A~~~~~~~~~~~~~~~ 585 (673)
..++.+|...|++++|+.+++++.+. ...|. +..+.......+ .+..+...++.... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88899999999999999999988762 12222 222222222222 23333333332111 11112
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
...+..++.+|...|++++|.+.++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999988753
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=8.1e-10 Score=102.63 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=111.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc-hh
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-SPA-SS 485 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~-~~ 485 (673)
+.++..+..+...+...|++++|...|+.+.+... .+ ...+..+..++.+.|++++|...|++.++... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44556666666666667777777777766665421 12 45566666666666666666666666665421 111 23
Q ss_pred hHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005856 486 LFRSVMESLFE--------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSL 557 (673)
Q Consensus 486 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 557 (673)
.+..+..++.. .|++++|...|+++++..+. +......+.......+...+ ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~---------------~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLAR---------------KQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHH---------------HHHHH
Confidence 34444555555 66666666666666665433 11111111110000000000 02346
Q ss_pred HHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhc----------CChHHHHHHHHHHHHcC
Q 005856 558 LSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAA----------GKTLNAYSILFKIMEKG 616 (673)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~----------g~~~~A~~~~~~~~~~~ 616 (673)
+..+...|++++|+..++++++..|... ...+..++.+|... |++++|++.++++++..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7777888999999999998888765532 45667788888866 88899999999988764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=4.3e-10 Score=106.23 Aligned_cols=125 Identities=13% Similarity=0.041 Sum_probs=53.7
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCc--hhhHHHHHH
Q 005856 423 GHSKEGNPDSAFEIVKIMGRR----GVPRD-ADAYICLIESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVME 492 (673)
Q Consensus 423 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~ 492 (673)
.|...|++++|...|++..+. +-++. ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555544331 11111 23445555555555555555555555443210 000 123344444
Q ss_pred HHhcc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 493 SLFED-GRVQTASRVMKSMVEKGVKE-N----LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 493 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|... |++++|+..|++.++..+.. + ..++..++..+...|++++|+..++++.+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44443 55555555555544431110 0 12334444444445555555555444444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=1.4e-08 Score=93.44 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhH
Q 005856 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR-----DADAY 452 (673)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 452 (673)
..++..+..++...|++++|++++.+.+..++ .+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 33444556666666777777777776655553 55666677777777777777777777777663 34 23444
Q ss_pred HHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCCH
Q 005856 453 ICLIESY--LRKG--EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV---------KENL 519 (673)
Q Consensus 453 ~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~ 519 (673)
..++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+..+ +.+.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 4454442 2223 677777777776543 24423333334466777777777777776554310 1245
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTI 568 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 568 (673)
.++..++.+....|+ +|.++++++.+ ..|+...+.+.-.+...++
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~d~~~k~~~Fd 300 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIKHHQEIDAKFD 300 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHHHHHHHHHHHH
Confidence 555445555555565 67777777777 5666554444433333333
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=6.3e-10 Score=104.82 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC------C-CC
Q 005856 268 TYTALLPGLCDAGKMVEVQKVLREMVER------YIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL------S-IP 334 (673)
Q Consensus 268 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~ 334 (673)
++..+...+...|++++|...+++++.. ...|....++..+...+...|++++|...++++.+. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555554442 112324455666666666667777666666666543 1 12
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005856 335 TEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (673)
Q Consensus 335 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (673)
....++..+...|...|++++|...++++++.
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23456677778888888888888888888764
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=5e-08 Score=90.89 Aligned_cols=229 Identities=8% Similarity=-0.009 Sum_probs=170.3
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG--NPDSAFEIVKIMGRRGVPRDADAYICLIESY----LRK--- 462 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 462 (673)
.....++|+.+++.++..+|.+..+|+.-..++...+ ++++++.+++.+...+.. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3445578999999999999999999999999998888 999999999999886433 556666655555 445
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--TASRVMKSMVEKGVKENLDLVAKILEALLMRGH------ 534 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 534 (673)
+++++++.+++.+.+.. +-+...|..-...+...|.++ +++++++++++.++. |...|+.-...+...|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78889999999988743 456777877777777788887 899999999988776 78888877777777776
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCCh-HHHHHHHHHHhcCC--CCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKT-IAAVKLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
++++++.+++++. ..|+ +......+.+.|+. +++..+.++.++.+ ...++..+..++++|.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8888888888887 5565 34455666666764 44556777666643 11245667788888888888999999
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 005856 608 ILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~ 625 (673)
.++.+.++-++.....|+
T Consensus 280 ~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHhccChHHHHHHH
Confidence 988887654443443433
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1.7e-09 Score=102.11 Aligned_cols=128 Identities=17% Similarity=0.093 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-c----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----
Q 005856 451 AYICLIESYLRK-GEPADAKTALDSMIEDGHSP-A----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----- 519 (673)
Q Consensus 451 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 519 (673)
++..+...|... |++++|+..+++.++..... + ..++..+...+...|++++|+..|+++.+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455566666664 66666666666655421000 0 234566666777777777777777777765433221
Q ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHH--ccCChHHHHHHHHHHhcC
Q 005856 520 -DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---------SLLSVLS--EKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 520 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~~~~--~~g~~~~A~~~~~~~~~~ 580 (673)
..+..++.++...|++++|+..+++.++ +.|++. .++..+. ..+++++|+..+++++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1455666677777777777777777665 444421 1233332 356677777777666554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.4e-08 Score=93.36 Aligned_cols=180 Identities=10% Similarity=0.081 Sum_probs=94.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
|+..|+++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554443 33444444555566666666666666666654432 1245555566666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005856 224 EKNIEP-----TVISYTTMIKG--YVAVE--RADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (673)
Q Consensus 224 ~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 294 (673)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 12333333333 22222 666666666666543 34423333333356666666666666665443
Q ss_pred CC-----C---CCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhC
Q 005856 295 RY-----I---PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (673)
Q Consensus 295 ~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (673)
.. . .|.++.+...++......|+ .|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 24455565455444444554 556666666654
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=8.6e-09 Score=93.03 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=116.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 005856 448 DADAYICLIESYLRKGEPADAKTALDSMIEDGHS-P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--DLVA 523 (673)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 523 (673)
+...+..+...+...|++++|...|+++++.... | ....+..+..++...|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888889999999999988864311 1 1246677778888899999999999998887554221 2444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCCh----------------H
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL----------------A 587 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~ 587 (673)
.+..++...|.. .++ .+..+...+...|++++|+..++++++..|.... .
T Consensus 83 ~~g~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ---------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhh---------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 455555432100 000 0001111122234444444444444443332211 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
....++..|.+.|++++|+..++++++..+... ...+..++.+|.+.|+.++|....+.+....++
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113567888889999999999999887643222 345667888899999999998777777766544
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=1e-08 Score=92.54 Aligned_cols=187 Identities=13% Similarity=0.058 Sum_probs=125.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh----h
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-R-DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----L 486 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~ 486 (673)
++..+..++..+...|++++|...|+.+.+.... | ....+..+..++.+.|++++|...++++++.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4566777888999999999999999999875322 1 24678888999999999999999999999754 4322 3
Q ss_pred HHHHHHHHhc------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 487 FRSVMESLFE------------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 487 ~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
+..+..++.. .|++++|...|+++++..+. +...+...... +. +...+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~~------~~~~~~~- 148 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----VF------LKDRLAK- 148 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----HH------HHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----HH------HHHHHHH-
Confidence 4444444443 34555555555555554332 11111111000 00 0000000
Q ss_pred CCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 549 GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 549 ~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
....++..+...|++++|+..++++++..|..+ ...+..++.++.+.|++++|++.++++...++
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 002356677889999999999999999876543 35677899999999999999999998887653
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=6.2e-08 Score=97.98 Aligned_cols=372 Identities=7% Similarity=0.007 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 005856 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDALRIFD 255 (673)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~ 255 (673)
++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666654 222 7888888888888774 4688888877777666653 344556666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCcH-HhHHHHHHHHhccCChHHHHHHHHHH
Q 005856 256 EMKSF-DV-KPNAVTYTALLPGLCD----AGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGHLNAAADVLKAM 328 (673)
Q Consensus 256 ~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (673)
..... |. ..+...|...+..+.. .++.+.+.++|+.++.. ++.+. ..|...... .+......+..++.+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHHHHHHH
Confidence 66542 32 2355666666654432 34566777777777763 22121 122221111 1111112222222111
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccC--C-----HhHHHH
Q 005856 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG--Q-----TGKAEI 401 (673)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~ 401 (673)
.+.+..|..+++.+.... +. .+...|...+..-...+ - .+.+..
T Consensus 150 ---------------------~~~y~~ar~~y~~~~~~~----~~----~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 150 ---------------------LPIFQSSFQRYQQIQPLI----RG----WSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHH----HT----CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHHHHH----hh----ccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 122334444444443211 00 12234555444432221 0 345677
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--
Q 005856 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-- 479 (673)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 479 (673)
+|+++....+.++..|...+..+...|++++|..++++.... +.+...|.. |....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh
Confidence 888888877778888888888888889999999999988876 334333332 2221111121 22222110
Q ss_pred -------CCC---chhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhC
Q 005856 480 -------HSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQS 548 (673)
Q Consensus 480 -------~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 548 (673)
..+ ....|...+..+.+.++.+.|..+|+++ .. +..+...|...+..-...+ +++.|..+++...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 001 1234555555555667777788888777 32 2234445543333323333 577777777776662
Q ss_pred -CCCCC-HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 549 -GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 549 -~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..|+ +..++....+.|+.+.|..+++++.+ ....|...+.--...|+.+.+.+++++...
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22222 12344444566777777777776621 344555555555556777777777777664
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=4.2e-09 Score=97.78 Aligned_cols=208 Identities=13% Similarity=0.008 Sum_probs=138.5
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD---PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV--PRDADAY 452 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 452 (673)
.+...+......+.+.|++++|...|+.+.+..|.+ +.++..+..+|...|++++|...|+.+.+... +.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345567777888899999999999999999988766 78899999999999999999999999988532 1224667
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCchh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 453 ICLIESYLR--------KGEPADAKTALDSMIEDGHSPASS-LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 453 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
..+..++.. .|++++|...|+++++.. |+.. ....+. .+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 788888888 999999999999998753 4332 221111 11111000 011244
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHcc----------CChHHHHHHHHHHhcCCCCCC--h
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLLSVLSEK----------GKTIAAVKLLDFCLGRDCIID--L 586 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~ 586 (673)
.++.+|...|++++|+..++++++. +..|. +..++.++... |++++|+..++++++..|... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5667777777777777777777662 11111 22344444433 777888888887777655433 2
Q ss_pred HhHHHHHHHHHhcCChHHH
Q 005856 587 ASYEKVLDALLAAGKTLNA 605 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A 605 (673)
.....+..++.+.|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3334455555555555443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=1.1e-08 Score=91.05 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC----CHHHHHHHH
Q 005856 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG----RVQTASRVM 507 (673)
Q Consensus 432 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 507 (673)
+|.+.|+...+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56667777777777777777777777777654 34555556666665 5 778888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC---CC-HHHHHHHHHc----cCChHHHHHHHH
Q 005856 508 KSMVEKGVKENLDLVAKILEALLM----RGHVEEALGRIDLMMQSGSV---PN-FDSLLSVLSE----KGKTIAAVKLLD 575 (673)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---p~-~~~~~~~~~~----~g~~~~A~~~~~ 575 (673)
++..+.+ +...+..+...|.. .+++++|++.+++..+.+.. |. ...+...|.. .+++++|..+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8776654 45666667777766 67788888888877775542 22 4456666665 677888888888
Q ss_pred HHhcCCCCCChHhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 005856 576 FCLGRDCIIDLASYEKVLDALLAA-G-----KTLNAYSILFKIMEKGG 617 (673)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~~~~ 617 (673)
++.+.+ .+...+..++.+|... | ++++|+++++++.+.+.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888762 1334556778777753 3 78888888888887764
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=2.8e-07 Score=93.15 Aligned_cols=370 Identities=9% Similarity=-0.011 Sum_probs=201.3
Q ss_pred CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hcCCH
Q 005856 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR-YMMAKRYFNKMLSE-GIE-PTRHTYNVMLWGFF----LSLKL 177 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~ 177 (673)
|+++.+..+|++.... .|++..|...+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888873 4688888888877766663 34566677776543 432 35566766666543 23567
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (673)
+.+..+|+.+.......-...|...... ....+...+.+++.+.. +.+..|..+++.+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 7788888888774211111222222211 11111222332222211 1223333333333
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC--CC-----HHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHh
Q 005856 258 KSFDVKPNAVTYTALLPGLCDA--GK-----MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (673)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (673)
...--..+...|...+..-... +- .+.+..+|++++.. .|..+..|...+..+.+.|+.+.|..++++...
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2110001333455444432221 11 34567788888875 344788888888888999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 331 LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
. |.+...+. .|....+.++. ++.+.+.... ...+.+. . ...
T Consensus 242 ~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~------------------------~~~~~~~-----~-~~~ 282 (493)
T 2uy1_A 242 M--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM------------------------GEAESAE-----K-VFS 282 (493)
T ss_dssp H--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------------------------------------CH
T ss_pred C--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh------------------------hccchhh-----h-hcc
Confidence 7 33332222 22222221221 3332211000 0000000 0 000
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCchhhHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-GEPADAKTALDSMIEDGHSPASSLFRS 489 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 489 (673)
.....+|...+....+.++.+.|..+|+.+ .. ...+...|...+..-... ++.+.|..+|+...+.. +-+...+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 112245666666666667788888888877 32 122444444322222222 35888888888877643 223344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+.-....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666667788888888888862 2567777777766777888888887776664
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=5.4e-09 Score=98.20 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=122.0
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----H
Q 005856 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----S 556 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~ 556 (673)
+.+...+..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|+..++++.. ..|+.. .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 344556667777788889999999999998888665 677788888889999999999999888776 445532 1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (673)
....+...++.++|+..+++++...|. +...+..++..|...|++++|++.+++++..... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233355677888888899988888754 4566678999999999999999999998886432 23566778888999999
Q ss_pred CcchHHHH
Q 005856 636 NTKQADIL 643 (673)
Q Consensus 636 ~~~~a~~~ 643 (673)
+.++|...
T Consensus 270 ~~~~a~~~ 277 (287)
T 3qou_A 270 TGDALASX 277 (287)
T ss_dssp TTCHHHHH
T ss_pred CCCcHHHH
Confidence 98888543
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.6e-09 Score=113.45 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=100.4
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 425 SKEGNPDSAFEIVKIMG--------RRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
...|++++|.+.++.+. +. .+.+...+..+...+...|++++|...++++++.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666777777776665 32 12344566666666666677777777776666532 2244556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHH
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~ 572 (673)
.|++++|...|+++++.++. +...+..+..++.+.|++++ ++.|+++++ ..|+ +..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777776666544 45555666666666666666 666666666 4444 3345555666667777777
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 005856 573 LLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (673)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 601 (673)
.++++++.++. ....+..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 66666665433 23444456666655444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=7.5e-09 Score=92.02 Aligned_cols=122 Identities=13% Similarity=-0.013 Sum_probs=78.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccC
Q 005856 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG 565 (673)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g 565 (673)
+...+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++++ ..|+ +..++.++...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 666777778888888888887777655 667777777777788888888888887777 5555 233444444333
Q ss_pred --ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 566 --KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 566 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+.+...++++.. +.|....+...+.++...|++++|++.++++++..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444555554432 22223334456777777888888888888877654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=7.9e-09 Score=89.12 Aligned_cols=161 Identities=9% Similarity=-0.004 Sum_probs=109.7
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH-H
Q 005856 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-Y 101 (673)
Q Consensus 23 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 101 (673)
.......+...|++++|+..|+.+++.+ |.+..++..+..++...|++++|...++.+....+ ++..+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3445557788889999999998888776 67888888888888889999999999988877643 44433332211 1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETA 180 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 180 (673)
...+....|...+++..+.. |.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223334667777776643 3456677777777777777777777777777654332 244666677777777777777
Q ss_pred HHHHHHHH
Q 005856 181 IRFFEDMK 188 (673)
Q Consensus 181 ~~~~~~~~ 188 (673)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=9.7e-09 Score=91.29 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=59.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHhhcccCCCCCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLK----------------MIEILGRVGKLNHARCILLDMPKKGVQWDE 91 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 91 (673)
..+...|++++|+..|+.+.+.+ |.++.++.. +..++.+.|++++|...|++.++..+. +.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 36678889999999999888876 455555555 445555555555555555554444322 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 92 DMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 92 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
..+..+...|...|++++|...|++..+.. |.+..+|..+...|.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445555555555555555555555554433 233444444444443
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=1.8e-07 Score=87.08 Aligned_cols=222 Identities=11% Similarity=0.104 Sum_probs=156.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHhhcccCCCCCCHHHHHHHHHHH----Hhc-
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG--KLNHARCILLDMPKKGVQWDEDMFEVLIESY----GKK- 104 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 104 (673)
.....++|++.++.++..+ |-...+|+.-..++...| ++++++.+++.++...+. +..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3445578999999999887 778888998888888888 889999999988877654 555665554444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 005856 105 --GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK---- 176 (673)
Q Consensus 105 --~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 176 (673)
+++++++.+++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++++.. +-|...|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 67888888888888765 567778887777777788877 8888888887764 3467777776666666665
Q ss_pred --HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005856 177 --LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDE-AEKLFAEMKEKN--IEPTVISYTTMIKGYVAVERADDAL 251 (673)
Q Consensus 177 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 251 (673)
++++++.++.+....+. |...|+.+-..+.+.|+... +..+.+++...+ -..+...+..+...+.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 77777777777766544 67777777666666666333 444555444322 1235566666677777777777777
Q ss_pred HHHHHHHh
Q 005856 252 RIFDEMKS 259 (673)
Q Consensus 252 ~~~~~~~~ 259 (673)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=1e-09 Score=91.61 Aligned_cols=137 Identities=9% Similarity=-0.132 Sum_probs=64.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHH
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIA 569 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~ 569 (673)
+...|++++|+..++......+. +...+..++.+|.+.|++++|++.+++.++ ..|+ +..++.++...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHH
Confidence 33445555555555554333111 122233455555555555555555555555 3333 2334444555555555
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI-LFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
|+..++++++.+|. +...|..++.+|.+.|++++|.+. ++++++.. +.++..+......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555555433 344445555566666665554443 35555432 223333333344444443
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=1.6e-09 Score=90.39 Aligned_cols=140 Identities=9% Similarity=-0.022 Sum_probs=99.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 456 IESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
...+...|++++|+..++..... .|+ ...+..+...|...|++++|+..|+++++.++. +...|..++.+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 34445567777888777776542 232 345566777788888888888888888887665 67788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHH-HHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKL-LDFCLGRDCIIDLASYEKVLDALLAAGK 601 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 601 (673)
+++|+..+++.++ ..|+ +..++.++.+.|++++|... ++++++.+|. ++..|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 8888888888887 5565 34566677788888766554 5888887654 46667667777776664
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=7.1e-09 Score=110.11 Aligned_cols=173 Identities=11% Similarity=-0.051 Sum_probs=100.3
Q ss_pred hcCCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 005856 31 HGAKNSEHALQFFRWVE--------RAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (673)
Q Consensus 31 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 102 (673)
...+++++|++.|+.+. +.+ |.+..++..+..++...|++++|...|+++.+.++. +...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 45566666666666665 433 455566666666666666666666666666654332 5556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 182 (673)
..|++++|...|++..+.. +.+...|..+..++.+.|++++ +..|++..+.+ +.+...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666543 2344556666666666666666 66666665542 2245556666666666666666666
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 005856 183 FFEDMKSRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
.|+++.+.+.. +...+..+..++...+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 66666554221 2444545555544433
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=3.8e-08 Score=80.38 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 417 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555554432 1244455555555555555555555555555432 2233444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.|++++|..+++++.+..+. +...+..++.++...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665555332 344555555566666666666666655554
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=4.4e-08 Score=87.22 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----CHHHHHHH
Q 005856 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG----HVEEALGR 541 (673)
Q Consensus 466 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 541 (673)
.+|.+.|++..+.| +...+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888754 56777788888889999999999999999876 56778888888887 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCCCC-CChHhHHHHHHHHHh----cCChHHHHHHHHHH
Q 005856 542 IDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLA----AGKTLNAYSILFKI 612 (673)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~ 612 (673)
+++..+.+.......+...|.. .+++++|+.+++++.+.++. ..+..+..|+.+|.. .+++++|++.+++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999887655556678888876 88999999999999998642 125677789999999 88999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-C-----CcchHHHHHHHHHhhh
Q 005856 613 MEKGGVTDWKSSDKLIAGLNQE-G-----NTKQADILSRMIRGEM 651 (673)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 651 (673)
.+.++ +..++..|...|... | +.++|....++..+.+
T Consensus 156 ~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98833 334566788888754 3 7899988777666555
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=4.6e-08 Score=79.87 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=116.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR 461 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (673)
.+..+...+...|++++|..+++.+.+..+.+..++..++..+...|++++|...++.+...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466778889999999999999999998888889999999999999999999999999998764 3467888899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005856 462 KGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV 515 (673)
Q Consensus 462 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (673)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998754 34567788889999999999999999999987643
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=6e-09 Score=99.15 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=64.3
Q ss_pred cCCHhHHHHHHHHHHHcCCC-------CH----HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVL-------DP----VAFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLI 456 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~-------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~ 456 (673)
.|++++|.+++++..+..+. +. ..|...+..|...|++++|...+..+.+. +-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777766543211 10 12333344444555555555555444321 1000 022444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---CCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHH
Q 005856 457 ESYLRKGEPADAKTALDSMIEDGH---SPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-N----LDLVAKIL 526 (673)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~ 526 (673)
..|...|++++|+..+++.++... .+. ..++..+...|.. |++++|+..|+++++..... + ..++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 455555555555555554432100 010 1233334444444 55555555555444431110 0 22334444
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 005856 527 EALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~ 546 (673)
.+|...|++++|+..+++.+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444444
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.2e-08 Score=88.04 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=97.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES-YL 460 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 460 (673)
.+......+...|++++|...+++..+..|.++..+..+..++...|++++|...++.+.... |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344556667777888888888887777767777778888888888888888888887776542 244333222211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 005856 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEAL 539 (673)
Q Consensus 461 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 539 (673)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..++.++...|+.++|+
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2122233556666665532 1234555556666666666666666666666654432 2345555666666666666666
Q ss_pred HHHHHHH
Q 005856 540 GRIDLMM 546 (673)
Q Consensus 540 ~~~~~~~ 546 (673)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=6.3e-08 Score=90.88 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
|.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 344445555555555666666666666655554332 45555555556666666666666666554432 333222221
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHcCC
Q 005856 133 -FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFK 210 (673)
Q Consensus 133 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 210 (673)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122444455555566665555442 2345555555666666666666666666665543221 1445566666666666
Q ss_pred ChHHHHHHHHHHH
Q 005856 211 KMDEAEKLFAEMK 223 (673)
Q Consensus 211 ~~~~a~~~~~~~~ 223 (673)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666665555543
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=6.7e-08 Score=100.96 Aligned_cols=155 Identities=9% Similarity=-0.071 Sum_probs=113.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005856 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (673)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 112 (673)
.|++++|++.|+.+.+.+ |.+..++..+..++...|++++|...+++..+.... +...+..+...|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999988876 677888999999999999999999999998886543 67888888889999999999999
Q ss_pred HHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 005856 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKLETAIRFFEDMKS 189 (673)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 189 (673)
.|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+...+... |++++|...+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988765 4567788888888999999999999999887763 33567788888888888 899999999988887
Q ss_pred CCC
Q 005856 190 RGI 192 (673)
Q Consensus 190 ~~~ 192 (673)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 643
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=9.3e-08 Score=99.87 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=116.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 005856 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (673)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 472 (673)
.|++++|...+++..+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678899999999988888889999999999999999999999999998864 336788999999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHh
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GHVEEALGRIDLMMQ 547 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 547 (673)
++..+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+..++... |++++|.+.+++.++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998753 345678888889999999999999999999988655 677888899999999 999999999999888
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=6.3e-08 Score=92.03 Aligned_cols=130 Identities=12% Similarity=-0.038 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--chh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR----GVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHS---P--ASS 485 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~ 485 (673)
+++.+..+|...|++++|...+++..+. |-.. ...++..+...|.. |++++|+..+++.++.... + ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555556666666666666666554431 1000 12455566666666 7777777777766542100 0 134
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVK----EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
++..+...+...|++++|+..|+++++.... +. ...+..++.++...|++++|+..+++.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666677777888888888888877764111 11 1244555566666677777777777666
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=2.3e-06 Score=80.49 Aligned_cols=230 Identities=7% Similarity=-0.031 Sum_probs=165.2
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChHH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK-G-EPAD 467 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 467 (673)
...+..++|+.+++.+...+|.+..+|+.-..++...| .+++++.+++.+...+.+ +..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 44556678999999999999999999999988888888 599999999999987543 788888887777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----
Q 005856 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQ--------TASRVMKSMVEKGVKENLDLVAKILEALLMRGH----- 534 (673)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 534 (673)
++.+++++++.. +-|...|+.-...+...|.++ ++++.++++++.++. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999998743 346677766655555555555 899999999998776 88888888888877776
Q ss_pred --HHHHHHHHHHHHhCCCCCCH----HHHHHHHHccCCh--------------------HHHHHHHHHHhcCC----C-C
Q 005856 535 --VEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT--------------------IAAVKLLDFCLGRD----C-I 583 (673)
Q Consensus 535 --~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~-~ 583 (673)
++++++.+++.+. ..|+. ..+...+.+.|+. .+........+... . .
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 6888988888887 66663 3344455555443 22222222222221 0 1
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 584 IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (673)
Q Consensus 584 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (673)
+++..+..++++|...|+.++|.+.++.+.++-++-...-|+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 346667788888888899999999998887665543333333
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=1.2e-07 Score=78.35 Aligned_cols=92 Identities=13% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+..+...+.+.|++++|+..|++++. ..|+ +..++.++...|++++|+..|++++..+|. ++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 334444445555555555555555444 2333 223444444455555555555555554433 233333455555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 005856 597 LAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~ 615 (673)
.+.|++++|++.|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=3.3e-06 Score=79.42 Aligned_cols=177 Identities=9% Similarity=0.054 Sum_probs=128.8
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc-C-
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK-G- 105 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~- 105 (673)
++......++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++...++ +..+|+.-...+... +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 4455567778999999999887 778888888888888888 588999999988887655 777887777766666 6
Q ss_pred CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 005856 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM--------MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK- 176 (673)
Q Consensus 106 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 176 (673)
++++++.+++.+.+.. +.+..+|+-...++.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7888888888888765 566777777666666655555 7888888887764 3477777777776666665
Q ss_pred ------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 177 ------LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 177 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 56777777777666443 66667665555555444
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=4.2e-07 Score=81.09 Aligned_cols=92 Identities=8% Similarity=-0.081 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005856 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (673)
Q Consensus 451 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (673)
.+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...++++.+..+. +...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34445556666677777776666552 345566666666666667777777777666666433 4556666666666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 005856 531 MRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~ 547 (673)
..|++++|++.++++.+
T Consensus 83 ~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH
Confidence 66666666666666665
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=2.5e-06 Score=80.43 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVK-ENL----DLVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLS 559 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~ 559 (673)
.+...|++++|..++++..+.... |+. ..+..+...+...|++++|+..++++++.. ..++ +..++.
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344455555555555554443111 110 112223444444445555555555554411 1111 223444
Q ss_pred HHHccCChHHHHHHHHHHhcC-----CCCC-ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-CHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGR-----DCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKG----GVT-DWKSSDKLI 628 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~ 628 (673)
++...|++++|+.+++++++. +..+ ....|..++.+|.+.|++++|++.++++++.. ..+ ....+..++
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 444555555555555555521 0000 12344556666666666666666666555421 111 134455556
Q ss_pred HHHHhcCC-cchHHHHHH
Q 005856 629 AGLNQEGN-TKQADILSR 645 (673)
Q Consensus 629 ~~~~~~g~-~~~a~~~~~ 645 (673)
.+|...|+ +++|....+
T Consensus 244 ~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHH
Confidence 66666663 355544333
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1e-06 Score=83.04 Aligned_cols=84 Identities=12% Similarity=0.007 Sum_probs=40.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhc---CCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---C-CC-CHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLG---RDCII---DLASYEKVLDALLAAGKTLNAYSILFKIMEKG---G-VT-DWKSSD 625 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~---~-~~-~~~~~~ 625 (673)
++..+...|++++|..+++++++ ..+.. ....+..++.+|...|++++|++.++++++.. . .. ....+.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34444455555555555555542 11111 01344555666666666666666666555321 0 00 134444
Q ss_pred HHHHHHHhcCCcchH
Q 005856 626 KLIAGLNQEGNTKQA 640 (673)
Q Consensus 626 ~l~~~~~~~g~~~~a 640 (673)
.++.+|...|+.++|
T Consensus 241 ~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 241 QRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCcHHH
Confidence 555556666666666
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=1.6e-07 Score=75.35 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL 596 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 596 (673)
.+...+..|.+.|++++|++.|++.++ ..|+ +..++.++...|++++|+..++++++.++. ....|..++.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 344455555666666666666665555 3333 233455555566666666666666665433 344555666666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 005856 597 LAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 597 ~~~g~~~~A~~~~~~~~~~ 615 (673)
...|++++|++.++++++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6777777777777766664
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=1.7e-07 Score=75.10 Aligned_cols=93 Identities=17% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+......+.+.|++++|+..|+++++.++. +...|..++.+|...|++++|+..+++.++ ..|+ +..++.++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH
Confidence 333444455555555555555555554433 445555555555555555555555555554 3333 223444455
Q ss_pred ccCChHHHHHHHHHHhcCCC
Q 005856 563 EKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|++++|+..|+++++.+|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 55555555555555555443
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=6.9e-08 Score=80.09 Aligned_cols=95 Identities=18% Similarity=0.072 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+...+..+...+...|++++|+..+++++. ..|+ +..++.++...|++++|+..+++++..+|. ++..+..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 345556677777777888888887777776 4444 344566667778888888888888777654 345566788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 005856 594 DALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.+|...|++++|++.++++++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887764
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=8.6e-08 Score=79.29 Aligned_cols=91 Identities=10% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|...|++++..++. +...|..+..+|...|++++|+..|++..+ ..|+ +..++.++.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence 334444444555555555555555554433 444445555555555555555555555444 2222 233444444
Q ss_pred ccCChHHHHHHHHHHhcC
Q 005856 563 EKGKTIAAVKLLDFCLGR 580 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~ 580 (673)
..|++++|+..|+++++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=2.2e-07 Score=84.32 Aligned_cols=185 Identities=14% Similarity=-0.046 Sum_probs=98.6
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC----------------
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNL-------IRGHSKEGNPDSAFEIVKIMGRRGVPRD---------------- 448 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------- 448 (673)
..++...|...|.++....|.....|..+ ..++...++..+++..++.... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999999999998888999888 5666666666666555555443 2222
Q ss_pred ------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HH
Q 005856 449 ------ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--LD 520 (673)
Q Consensus 449 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 520 (673)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1222334455556666666666666554322 333233333344555566666666555332221 110 12
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.+..+..++.+.|++++|+..|++....+..|. ....+.++.+.|+.++|..+|++++..+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455555555555555555555543222133 1123333444555555555555444443
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.4e-06 Score=80.55 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=89.8
Q ss_pred HHHHHccCCHhHHHHHHHHHHHcCCCCHH------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHH
Q 005856 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPV------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICL 455 (673)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 455 (673)
+..+...|++++|..++++..+..+.++. .+..+...+...+++++|...++.+...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566667777777777776664422222 2234555555666777777777766652111 12 2246666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CCCCc-hhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005856 456 IESYLRKGEPADAKTALDSMIED-----GHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKEN-LDLVAK 524 (673)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 524 (673)
...|...|++++|...++++.+. +..+. ..++..+...|...|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66677777777777776666531 11111 124555566666666666666666666543 11111 345556
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHHh
Q 005856 525 ILEALLMRG-HVEEALGRIDLMMQ 547 (673)
Q Consensus 525 l~~~~~~~g-~~~~A~~~~~~~~~ 547 (673)
++.+|...| .+++|++.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 666666666 34666666665543
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=2.8e-06 Score=75.63 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.+..+...+...|++++|...|++.. +++..++..+...|...|++++|...|++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888875 3477888888888888888888888888887764 456677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEP---------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 191 (673)
..|++++|...|++..+..... ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887753211 12567777778888888888888888888764
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=6.6e-07 Score=81.15 Aligned_cols=189 Identities=7% Similarity=-0.112 Sum_probs=132.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHhhccc------------CCC-----
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKM-------IEILGRVGKLNHARCILLDMPK------------KGV----- 87 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~----- 87 (673)
..++++.|.+.|..+.+.+ |.....|..+ ..++.+.+...++...+..-+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999998 7888999988 6777777777777666665544 221
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HH
Q 005856 88 ---QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT--RH 162 (673)
Q Consensus 88 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 162 (673)
.............+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0113445556677888888999988888887654 333255556667788888888888887654421 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566677778888888888888888875432243 335556666777788888888888888775
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=6.6e-07 Score=76.01 Aligned_cols=123 Identities=12% Similarity=-0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|+..+++..+ ..|+ +..++.++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 344444555566666666666666555433 455555566666666666666666665555 2232 223444444
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhH--HHHHHHHHhcCChHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASY--EKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
..|++++|...++++++..+. +...+ ...+..+.+.|++++|++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555555554432 22222 223333555566666666655543
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.9e-07 Score=79.32 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=84.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH-HHccCCh-
Q 005856 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV-LSEKGKT- 567 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~-~~~~g~~- 567 (673)
+...|++++|...+++..+..+. +...|..++.+|...|++++|+..++++.+ ..|+ +..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567778888888887777544 667777788888888888888888887776 3343 2345555 5567887
Q ss_pred -HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 568 -IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 568 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
++|...+++++..++. +...+..++.++...|++++|+..++++++...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888887654 456666788888888888888888888887643
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=6.4e-07 Score=86.08 Aligned_cols=126 Identities=12% Similarity=0.007 Sum_probs=77.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (673)
.+..+...+...|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--LD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 444445555555555555555555555533321 45666777777777777777777777776 44
Q ss_pred CC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 005856 552 PN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA-YSILFKIME 614 (673)
Q Consensus 552 p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~ 614 (673)
|+ +..++.++...|++++|+..|+++++..|. +...+..++.++.+.|++++| ...++++..
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 334555666677777777777777776543 345566677777777777777 345555543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=2.9e-07 Score=79.32 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=101.0
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHH-HHhcCCH-
Q 005856 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES-YGKKGIV- 107 (673)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~- 107 (673)
+...|+++.|+..|+.+.+.. |.+..++..++.++...|++++|...|+...+..+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 356788999999999998887 778899999999999999999999999998876543 67788888888 7788998
Q ss_pred -HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005856 108 -QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (673)
Q Consensus 108 -~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (673)
++|...|+.+.+.. +.+...+..+...+...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998865 4557788888899999999999999999988763
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=1.4e-05 Score=75.11 Aligned_cols=165 Identities=11% Similarity=-0.011 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HHH
Q 005856 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERS-----VKSYDALFKLILRRGRYMMAKRYFNKMLSEGI---EPT--RHT 163 (673)
Q Consensus 94 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 163 (673)
+...+..+...|++++|...+....+...... ...+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33444555556666666666655544321110 01123344445555666666666666543211 111 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCC-CHH
Q 005856 164 YNVMLWGFFLSLKLETAIRFFEDMKS---R-GISL--DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN----IEP-TVI 232 (673)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 232 (673)
++.+...|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 55666666666666666666666542 1 1111 11455666666666666666666666654321 111 134
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 005856 233 SYTTMIKGYVAVERADDA-LRIFDEMK 258 (673)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a-~~~~~~~~ 258 (673)
+|..+...|...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556666666666666666 55555543
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.6e-07 Score=79.54 Aligned_cols=156 Identities=13% Similarity=-0.076 Sum_probs=84.1
Q ss_pred ccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCChH
Q 005856 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVP-RDADAYICLIESYLRKGEPA 466 (673)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~ 466 (673)
..|++++|...++.+.........++..+...+...|++++|...+++... .+.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 456777777755444333234556667777777777777777777766654 1111 12345566666666777777
Q ss_pred HHHHHHHHHHHc----CCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCC--HHHHHHHHHHHHcCCCH
Q 005856 467 DAKTALDSMIED----GHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GV-KEN--LDLVAKILEALLMRGHV 535 (673)
Q Consensus 467 ~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~--~~~~~~l~~~~~~~g~~ 535 (673)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. .. .+. ...+..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777666665532 1011 1223445555566666666666666665543 00 111 12234555556666666
Q ss_pred HHHHHHHHHHHh
Q 005856 536 EEALGRIDLMMQ 547 (673)
Q Consensus 536 ~~A~~~~~~~~~ 547 (673)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.4e-06 Score=70.26 Aligned_cols=114 Identities=15% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..++..+...|++++|+..++++.. ..|+ +..++..+...|++++|...+++++...+. +...+..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3444455555556666666666655554 2232 223444555566666666666666655432 34555667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 005856 596 LLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (673)
+...|++++|.+.+++++... +.+...+..+..++...|+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777653 23455555666666666654
No 138
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=2.2e-05 Score=73.54 Aligned_cols=240 Identities=9% Similarity=-0.074 Sum_probs=115.3
Q ss_pred ccCCHh-HHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 392 HNGQTG-KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN----------PDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 392 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
+.|.++ +|+.++..+...+|.+..+|+.--.++...+. +++++.+++.+...+. -+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHh
Confidence 445443 67777777777777777777665555544332 3455555555555322 25555555555555
Q ss_pred hcCC--hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 461 RKGE--PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR-VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (673)
Q Consensus 461 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (673)
..++ +++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++++++.++. |...|+.....+...+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 5552 555555555555432 2344455444444444554 35555555555555444 44555444333332210000
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc-----------CChHHHH
Q 005856 538 ALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA-----------GKTLNAY 606 (673)
Q Consensus 538 A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----------g~~~~A~ 606 (673)
+ ++ ..-...+.++++++++++++..+|. +...|+.+-..+.+. +.+++++
T Consensus 198 ~-------------~~-----~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 198 S-------------GP-----QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred c-------------cc-----ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 0 00 0000013355566666666655443 333343333333333 3456666
Q ss_pred HHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 607 SILFKIMEKGGVTDWKSSDK--LIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
+.++++++..+..-|..... +.......|..+++......+.+.++.
T Consensus 259 ~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 259 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 77777666543222322111 111222345555555556666666643
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=9.7e-08 Score=89.23 Aligned_cols=98 Identities=12% Similarity=-0.024 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (673)
...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444555555555555555555554432 1144455555555555555555555555554421 1223444445555
Q ss_pred HhccCCHHHHHHHHHHHHHc
Q 005856 494 LFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~ 513 (673)
+...|++++|...|+++.+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=2.1e-05 Score=73.62 Aligned_cols=153 Identities=9% Similarity=-0.056 Sum_probs=117.8
Q ss_pred HhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHH
Q 005856 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN--PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE-PADAKTAL 472 (673)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 472 (673)
+++++.+++.+....|.+..+|+.-..++...+. +++++.+++.+.+... -|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6789999999999999999999999888888884 8999999999998753 488899888888888888 58999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------
Q 005856 473 DSMIEDGHSPASSLFRSVMESLFED--------------GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR------ 532 (673)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 532 (673)
+++++.. +-|...|+.....+... +.++++++.+..++...+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 9999864 45667777766655544 4578888888888888766 777777555555444
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCC
Q 005856 533 -----GHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 533 -----g~~~~A~~~~~~~~~~~~~p~ 553 (673)
+.++++++.++++.+ ..|+
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred chHHHHHHHHHHHHHHHHHh--hCcc
Confidence 235566666666665 4555
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=4.2e-07 Score=74.88 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
...+..+...+.+.|++++|+..+++++. ..|+ +..++.++...|++++|+..+++++..+|. ++..+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455566667777777777777777766 3444 334566666777777777777777777654 3445567888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 005856 595 ALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~ 615 (673)
+|...|++++|++.+++++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=2.2e-06 Score=72.67 Aligned_cols=127 Identities=9% Similarity=-0.036 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.+..++..+...|+++.|...|+...+.... +..++..+...+...|++++|...+++..+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444555555555555555554443221 34445555555555555555555555554432 233444555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEPTRHTYNV--MLWGFFLSLKLETAIRFFEDM 187 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 187 (673)
..|++++|...|++..+.. +.+...+.. .+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555554432 112223322 222244455555555555544
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.9e-06 Score=69.56 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSV 560 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~ 560 (673)
..+..+...+...|++++|...++++....+. +...+..++.++...|++++|++.+++..+ ..|+ +..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHH
Confidence 34555555666667777777777776665433 456666667777777777777777776666 2333 2345556
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT 602 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 602 (673)
+...|++++|...+++++...+. +...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66777777777777777776543 345556677777776664
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.8e-07 Score=89.88 Aligned_cols=151 Identities=11% Similarity=-0.072 Sum_probs=100.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHH
Q 005856 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD--------------ADAYICLIESY 459 (673)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 459 (673)
+++++|...++......+.+...+..+...+...|++++|...|+++........ ...|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444333344566778888888888888888888888877532211 46677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-
Q 005856 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA- 538 (673)
Q Consensus 460 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 538 (673)
.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++...|++++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777643 234566667777777777777777777777776554 566666777777777777766
Q ss_pred HHHHHHHH
Q 005856 539 LGRIDLMM 546 (673)
Q Consensus 539 ~~~~~~~~ 546 (673)
...++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=4e-07 Score=85.02 Aligned_cols=91 Identities=9% Similarity=-0.133 Sum_probs=59.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 005856 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 106 (673)
...+...|++++|+..|+.+.+.. |.+...+..+..++.+.|++++|...++...+..+. +...+..+..+|...|+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 345666677777777777776665 556666666677777777777777777766665432 55666666666666777
Q ss_pred HHHHHHHHHHHHHc
Q 005856 107 VQESVKIFDIMKQL 120 (673)
Q Consensus 107 ~~~a~~~~~~~~~~ 120 (673)
+++|...|++..+.
T Consensus 88 ~~~A~~~~~~al~l 101 (281)
T 2c2l_A 88 YDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777766666553
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.2e-06 Score=77.38 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=52.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccC----CC-CCCHHHHHHHHHHHHhcCC
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK----GV-QWDEDMFEVLIESYGKKGI 106 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~ 106 (673)
..|+++.|.+.++.+.... .....++..+..++...|++++|...+++.... +. +....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4556666666444443211 234455555555666666666666655554431 10 0122334444445555555
Q ss_pred HHHHHHHHHHHHHc----CCc--cCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 005856 107 VQESVKIFDIMKQL----GVE--RSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (673)
Q Consensus 107 ~~~a~~~~~~~~~~----g~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (673)
+++|...+++..+. +-. .....+..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555544332 100 01123344444444445555555444443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=7e-07 Score=71.67 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 588 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.|..++.++...|++++|++.+++.+..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666677777777777777776654
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=1.2e-06 Score=70.28 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=78.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTD----WKSSDKLIA 629 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~~ 629 (673)
.++..+.+.|++++|+..|+++++.+|. +...|..++.+|.+.|++++|++.++++++... ..+ ..++..++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 4777888899999999999999988754 567788899999999999999999999987421 222 346677899
Q ss_pred HHHhcCCcchHHHHHHHHHhhhcccch
Q 005856 630 GLNQEGNTKQADILSRMIRGEMSRGSQ 656 (673)
Q Consensus 630 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 656 (673)
++...|++++|....+...+..++++.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 999999999998877666655554433
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=3.6e-06 Score=68.11 Aligned_cols=101 Identities=16% Similarity=0.036 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHH
Q 005856 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (673)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 132 (673)
+.+...+..++..+...|++++|...+++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 344456666666666677777777777666654322 55666666666666666666666666666543 3345556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 005856 133 FKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
..++.+.|++++|...|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666666553
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=6.1e-06 Score=65.78 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHH
Q 005856 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (673)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (673)
...+..++.++...|+++.|...++++.+... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34444555555555555555555555544322 234445555555555555555555555554432 2334444455555
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 005856 136 ILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 136 ~~~~g~~~~A~~~~~~~~~ 154 (673)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=7.2e-06 Score=65.34 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005856 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWG 170 (673)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (673)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655543 2344455555555556666666666665555432 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 005856 171 FFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~ 190 (673)
+...|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=7.1e-07 Score=73.90 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 55 DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 55 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
+...+..+...+...|++++|...|+..+..++. +...|..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3344444455555555555555555554443322 44444445555555555555555555554432 223344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 005856 135 LILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~ 154 (673)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=6.4e-06 Score=66.62 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=61.5
Q ss_pred CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 005856 378 MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE 457 (673)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 457 (673)
.+...+..+...+...|+++.|...+++..+..+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445566666666666666666666666666665566666666666666666666666666665542 224555666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005856 458 SYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~ 477 (673)
++...|++++|...+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.4e-06 Score=67.58 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
...+..+...|++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++.++. +...|..++.++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444 2222 222333444444445555555444444332 23344455555555
Q ss_pred cCChHHHHHHHHHHHH
Q 005856 599 AGKTLNAYSILFKIME 614 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~~ 614 (673)
.|++++|++.++++++
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555554
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=2.5e-06 Score=72.20 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..+...+...|++++|+..|++.++ ..|+ +..++.++...|++++|+..++++++.++. +...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555555 2333 233444555556666666666666655433 34455566666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 005856 596 LLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~ 615 (673)
|...|++++|++.++++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66667777777666666653
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.1e-06 Score=66.10 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 005856 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (673)
Q Consensus 452 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (673)
|..+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|+..++++++.++. +...|..++.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444322 122334444444444445555555555444444332 34444444444444
Q ss_pred CCCHHHHHHHHHHHHh
Q 005856 532 RGHVEEALGRIDLMMQ 547 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~ 547 (673)
.|++++|+..+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555544444443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=5e-06 Score=73.00 Aligned_cols=84 Identities=8% Similarity=-0.125 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (673)
..+..+..+|...|++++|+..+++.++ ..|+ +..++.++...|++++|+..++++++..+. +...+..++.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3444455555555555555555555444 2232 122333334444444444444444443322 22333334444
Q ss_pred HHhcCChHHHH
Q 005856 596 LLAAGKTLNAY 606 (673)
Q Consensus 596 l~~~g~~~~A~ 606 (673)
+...|+..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=2.1e-06 Score=70.60 Aligned_cols=93 Identities=14% Similarity=-0.041 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005856 95 EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS 174 (673)
Q Consensus 95 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (673)
..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++....+ +.+...+..+..++...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 333444444445555555554444432 2334444444444444555555555554444432 12333444444444455
Q ss_pred CCHHHHHHHHHHHHh
Q 005856 175 LKLETAIRFFEDMKS 189 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~ 189 (673)
|++++|...|+....
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544443
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.4e-05 Score=62.88 Aligned_cols=53 Identities=13% Similarity=-0.110 Sum_probs=23.3
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+...|++++|...++++++..+. +...+..++.++...|++++|.+.++++++
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 48 YAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344444444444444443322 233344444555555555555555555444
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=7.2e-06 Score=69.34 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLS 562 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~ 562 (673)
+..+...+...|++++|+..|+++++..+. +...|..+..+|...|++++|+..+++.++ ..|+ +..++.++.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444455555555555555444332 344444455555555555555555555444 2333 223444444
Q ss_pred ccCChHHHHHHHHHHhcCC
Q 005856 563 EKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~ 581 (673)
..|++++|+..++++++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 5555555555555555543
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=1.2e-06 Score=77.05 Aligned_cols=141 Identities=12% Similarity=-0.025 Sum_probs=60.8
Q ss_pred HhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC----------------HhhHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS----------------VKSYD 130 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~ 130 (673)
...|+++.+.+.++.-..... .....+..+...+...|++++|...|++..+... .+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHH
Confidence 334445555544443322111 1233444555555566666666666666655321 11 13444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 005856 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFK 210 (673)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 210 (673)
.+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++....... +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 44445555555555555555554432 223444444445555555555555555554443211 3334444444443333
Q ss_pred C
Q 005856 211 K 211 (673)
Q Consensus 211 ~ 211 (673)
+
T Consensus 171 ~ 171 (198)
T 2fbn_A 171 E 171 (198)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=4.3e-06 Score=66.27 Aligned_cols=50 Identities=18% Similarity=0.022 Sum_probs=20.6
Q ss_pred ccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
..|++++|+..++++++.+|. +...+..++.+|...|++++|++.+++++
T Consensus 63 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 63 ENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443322 22233344444444444444444444444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=8.7e-06 Score=66.32 Aligned_cols=95 Identities=11% Similarity=-0.047 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHH
Q 005856 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (673)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (673)
+...+..++..+...|++++|+..+++.+. ..|+ +..++.++...|++++|...+++++..++. +...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 455666666666677777777777766665 3333 334555566677777777777777776543 455666788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 005856 594 DALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
.++...|++++|++.+++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888887764
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=4.4e-06 Score=84.35 Aligned_cols=114 Identities=13% Similarity=-0.021 Sum_probs=61.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTI 568 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~ 568 (673)
.+...|++++|.+.++++++..+. +...|..++.+|.+.|++++|++.+++.++ ..|+ +..++.++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 344556666666666666665433 455566666666666666666666666665 3444 233455555666666
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHH--HHhcCChHHHHHHHH
Q 005856 569 AAVKLLDFCLGRDCIIDLASYEKVLDA--LLAAGKTLNAYSILF 610 (673)
Q Consensus 569 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~g~~~~A~~~~~ 610 (673)
+|+..++++++..+.. ...+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666654332 2233344444 556666666666666
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=2.3e-05 Score=61.60 Aligned_cols=90 Identities=17% Similarity=0.031 Sum_probs=33.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 455 LIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 455 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhh
Confidence 3333334444444444444433321 112233333333333444444444444444333222 23333333334444444
Q ss_pred HHHHHHHHHHHH
Q 005856 535 VEEALGRIDLMM 546 (673)
Q Consensus 535 ~~~A~~~~~~~~ 546 (673)
+++|.+.+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=7.9e-06 Score=64.74 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=39.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCC
Q 005856 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGK 566 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~ 566 (673)
...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..+++.++ ..|+ +..++.++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 33444444555555555544444333 344444444444445555555555444444 3333 2223334444455
Q ss_pred hHHHHHHHHHHhcC
Q 005856 567 TIAAVKLLDFCLGR 580 (673)
Q Consensus 567 ~~~A~~~~~~~~~~ 580 (673)
+++|+..++++++.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.3e-05 Score=78.70 Aligned_cols=119 Identities=11% Similarity=-0.016 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 005856 496 EDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQS----GSVPN----FDSLLSVLS 562 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~----~~~~~~~~~ 562 (673)
..|+++.|..+++..... +..+ ...++..++..|...|++++|..+++++... +..|. +...+..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555554432 1111 1234445555555555665555555544431 11111 122344444
Q ss_pred ccCChHHHHHHHHHHhcCC---CCCC---hHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 563 EKGKTIAAVKLLDFCLGRD---CIID---LASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~---~~~~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
..|++++|..++++++... +.|. ...+..++..+...|++.+|...+.++.+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666665555554321 1110 22334444555556666666665555543
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=3.5e-06 Score=71.16 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC---------CC-------CCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQS---------GS-------VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-------~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
+...+..+.+.|++++|+..|++.+.. +. .|. +..++.++...|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455555555555555555554441 00 122 2345666667888888888888888876
Q ss_pred CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 582 ~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
|. +...|..++.+|...|++++|+..+++++...
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 44 45666778888888888888888888888764
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=9.2e-06 Score=66.18 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 590 EKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 590 ~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
...+.+|...|++++|++.|+++++
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5677777777777777777777665
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=9.8e-06 Score=65.21 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCC--CC----hHhHHH
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI--ID----LASYEK 591 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 591 (673)
+..++..+...|++++|+..+++..+ ..|+ +..++..+...|++++|..+++++++..+. ++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44444555555555555555555544 1222 223444444555555555555555554321 11 455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 592 VLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 592 l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
++.++...|++++|.+.+++++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888888888888764
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=9e-05 Score=76.15 Aligned_cols=169 Identities=10% Similarity=-0.007 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-
Q 005856 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR----------VQTASRVMKSMVEKGVKENLDLVAKILEALLMRG- 533 (673)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 533 (673)
.++|++.+++++... +-+...|+.-...+...|+ ++++++.++.+++.+++ +..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356777777777643 2234455555555555555 88999999999988777 7888888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccC-ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc--------
Q 005856 534 -HVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKG-KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA-------- 599 (673)
Q Consensus 534 -~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------- 599 (673)
+++++++.++++.+ ..|. |..-..++...| .+++++++++++++.++. +...|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 77999999999988 5565 344555666777 889999999999988765 566777777777764
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcch
Q 005856 600 ------GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQ 639 (673)
Q Consensus 600 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 639 (673)
+.+++|++.+++++... +.+...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999865 4466788888888888887555
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=4.9e-06 Score=70.13 Aligned_cols=93 Identities=15% Similarity=-0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHccCChHHHHHHHHHHhcCCC---C--CChHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQSG-SVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRDC---I--IDLAS 588 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~ 588 (673)
+..+...+...|++++|++.+++..+.. ..++ +..++..+...|++++|..+++++++... . .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3444555555555555555555444310 0000 11233344445555555555555443210 0 01334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 589 YEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 589 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
+..++..+...|++++|.+.++++++
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55677777777777777777777664
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=7.9e-06 Score=63.61 Aligned_cols=59 Identities=5% Similarity=-0.017 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005856 60 LKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 60 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 119 (673)
..++.++...|++++|...++...+.... +...+..+...+...|++++|...|++..+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33333344444444444444433332211 233333333333444444444444444333
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00011 Score=73.63 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=140.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCC--------CchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC--CCC
Q 005856 344 IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLD--------MEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLD 413 (673)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 413 (673)
...+.+.|++++|++.|..+++............ .....+..+...|...|++++|.+.+..+.... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888887776542110000000 001246778899999999999999999877643 222
Q ss_pred H----HhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 005856 414 P----VAFNNLIRGHSKEGNPDSAFEIVKIMGR----RGVPR-DADAYICLIESYLRKGEPADAKTALDSMIEDGHS--- 481 (673)
Q Consensus 414 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 481 (673)
. .+.+.+...+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..++++....-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344455555667899999999987654 22222 3567888999999999999999999988743111
Q ss_pred -C-chhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 482 -P-ASSLFRSVMESLFEDGRVQTASRVMKSMVEK--GV-KEN---LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 482 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+ ....+..++..|...|++++|..++++.... .. .|. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346777888999999999999999988764 12 221 23455667777889999999988877664
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4e-05 Score=63.19 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKI 525 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 525 (673)
..+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|...++++.+..+. +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 33334444444444444444444444432 122 233333344444444444444444444443222 33344444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 005856 526 LEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..++...|++++|...+++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=3.5e-05 Score=62.59 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 005856 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (673)
Q Consensus 265 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (673)
+...+..+...+...|+++.|...|+..+.. .|.+..++..+..++...|+++.|...++...+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3445555555555556666666655555553 34455556666666666666666666666655543 33455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHch
Q 005856 345 ENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.+|...|++++|+..|+.+++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666665443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.18 E-value=1.7e-05 Score=79.79 Aligned_cols=125 Identities=11% Similarity=-0.041 Sum_probs=80.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKEN--------------LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP 552 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 552 (673)
+......+.+.|++++|+..|+++++..+... ...|..+..+|.+.|++++|+..++++++ ..|
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LDS 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCC
Confidence 34444445555555555555555555432211 46677788888888888888888888887 455
Q ss_pred C----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 005856 553 N----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS-ILFKIME 614 (673)
Q Consensus 553 ~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~-~~~~~~~ 614 (673)
+ +..++.++...|++++|+..|+++++..+. +...+..++.++.+.|++++|.+ .+.+|..
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 345666777888888888888888887654 34566678888888888887764 3444443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=2.4e-05 Score=60.74 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPR--DADAYICLIES 458 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 458 (673)
..+..+...+...|++++|...+++..+..+.+..++..+..++...|++++|...++...+.. +. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 3445555566666666666666666666655566666666666666666666666666665542 22 35555566666
Q ss_pred HHhc-CChHHHHHHHHHHHHc
Q 005856 459 YLRK-GEPADAKTALDSMIED 478 (673)
Q Consensus 459 ~~~~-~~~~~A~~~~~~~~~~ 478 (673)
+... |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666665543
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=1.4e-05 Score=65.16 Aligned_cols=96 Identities=11% Similarity=-0.085 Sum_probs=73.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCC------C-----hHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCII------D-----LASYEKVLDALLAAGKTLNAYSILFKIMEK-------GGV 618 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-------~~~ 618 (673)
.+..+.+.|++++|+..|+++++..|.. + ...|..++.++.+.|++++|+..++++++. . +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p 95 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q 95 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C
Confidence 4455556667777777777666655441 1 237889999999999999999999999986 4 3
Q ss_pred CCHHHH----HHHHHHHHhcCCcchHHHHHHHHHhhhcc
Q 005856 619 TDWKSS----DKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (673)
Q Consensus 619 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (673)
.....| ...+.++...|++++|....++..+..++
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 456677 88999999999999998877777777633
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.3e-05 Score=60.92 Aligned_cols=100 Identities=14% Similarity=-0.016 Sum_probs=55.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHH
Q 005856 413 DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRD----ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR 488 (673)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 488 (673)
+...+..+...+...|++++|...|+...+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44455555555555566666666665555432 33 4455555556666666666666666655432 12344555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEKGV 515 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 515 (673)
.+...+...|++++|...|++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555566666666666666666665543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.4e-05 Score=64.33 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccC-------HhhH
Q 005856 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-------VKSY 129 (673)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~~ 129 (673)
..+..++..+...|+++.|...++...+..+ .+...+..+...|...|++++|...+++..+.. +.+ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence 3445555555566666666666665554432 245555555555556666666666665555432 111 4445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005856 130 DALFKLILRRGRYMMAKRYFNKMLS 154 (673)
Q Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (673)
..+...+...|++++|...|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555555556666666666655554
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=4.2e-05 Score=61.36 Aligned_cols=94 Identities=13% Similarity=-0.036 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC--hHhHHHHHHH
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQS-GSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDA 595 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 595 (673)
..++..+...|++++|+..++++.+. +..|. +..++.++...|++++|+..++++++..|... ...+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 44667788888999999888888772 23331 33466677788889999988888888765532 5556778888
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 005856 596 LLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 596 l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+...|++++|++.+++++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888899999998888888764
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=8.4e-06 Score=68.74 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCC
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDC 582 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 582 (673)
..|..+..+|.+.|++++|+..++++++ ..|+ +..++.++...|++++|...+++++..+|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 4555566666666666666666666665 3444 23355555566666666666666666543
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=9.8e-06 Score=81.45 Aligned_cols=148 Identities=12% Similarity=0.037 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC----------------CHHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQS-GSVP----------------NFDSLLSV 560 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p----------------~~~~~~~~ 560 (673)
+++++|...|+...+..+. ....+..+...+.+.|++++|+..|++.++. +..+ -+..++.+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444443333211 3456778899999999999999999999872 2221 12356777
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchH
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
+.+.|++++|+..++++++.++. +...|..++.+|...|++++|+..|+++++... .....+..+..++...|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998765 567778999999999999999999999998643 3455677788999999999988
Q ss_pred H-HHHHHHH
Q 005856 641 D-ILSRMIR 648 (673)
Q Consensus 641 ~-~~~~~~~ 648 (673)
. .+...+.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 4 4444444
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=5.4e-06 Score=65.36 Aligned_cols=83 Identities=18% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 005856 532 RGHVEEALGRIDLMMQSGS-VPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (673)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~ 606 (673)
.|++++|+..+++.++.+. .|+ +..++.++...|++++|+..++++++..|. +...+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4556666666666665210 132 233555556667777777777766666544 3455556777777777777777
Q ss_pred HHHHHHHHc
Q 005856 607 SILFKIMEK 615 (673)
Q Consensus 607 ~~~~~~~~~ 615 (673)
+.+++++..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776664
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.1e-05 Score=76.29 Aligned_cols=82 Identities=13% Similarity=-0.064 Sum_probs=44.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (673)
++.++.+.|++++|+..++++++.++. +...|..++.+|...|++++|++.++++++.. +.+...+..+..++...++
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555432 34445556666666666666666666666543 2234444455555555555
Q ss_pred cchH
Q 005856 637 TKQA 640 (673)
Q Consensus 637 ~~~a 640 (673)
.+++
T Consensus 357 ~~~a 360 (370)
T 1ihg_A 357 QKDK 360 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=8.9e-05 Score=59.37 Aligned_cols=92 Identities=12% Similarity=-0.070 Sum_probs=54.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC---HHHHHHHHH
Q 005856 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDR---ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIE 99 (673)
Q Consensus 26 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 99 (673)
....+...|+++.|...|+.+.+.. |.+. .++..+..++...|++++|...|+.+.+..+. + ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 3445556666666666666666654 3333 45556666666666666666666666554322 2 445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005856 100 SYGKKGIVQESVKIFDIMKQL 120 (673)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~ 120 (673)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=1.8e-05 Score=66.48 Aligned_cols=131 Identities=16% Similarity=0.005 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hh
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RD----ADAYICLIESYLRKGEPADAKTALDSMIEDGHS-PA----SS 485 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~ 485 (673)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555544331000 01 124444555555555555555555554421100 00 22
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEK----GVK-ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444555555555555555555433 100 012233445555555555555555555444
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=4.4e-05 Score=62.00 Aligned_cols=112 Identities=11% Similarity=-0.072 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHH
Q 005856 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKL 573 (673)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~ 573 (673)
+++++|..+|++..+.|.. +.. +...|...+.+++|++.+++..+.+.......+...|.. .+++++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4566777777777666522 222 555555556666677777777665544445556666655 6777777777
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 005856 574 LDFCLGRDCIIDLASYEKVLDALLA----AGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 617 (673)
++++.+.+ ++..+..++.+|.. .+++++|+++++++.+.+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777764 34556677777777 7788888888888777753
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.4e-05 Score=80.63 Aligned_cols=118 Identities=9% Similarity=-0.055 Sum_probs=84.7
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 005856 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (673)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 108 (673)
.+...|++++|++.|+.+.+.+ |.+..++..+..++.+.|++++|...+++..+..+. +...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 4556788888888888888876 667888888888888888888888888888776543 6777778888888888888
Q ss_pred HHHHHHHHHHHcCCccCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 005856 109 ESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFN 150 (673)
Q Consensus 109 ~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 150 (673)
+|...|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877754 2334445555444 667777777777776
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=9e-06 Score=64.03 Aligned_cols=90 Identities=16% Similarity=-0.017 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHhcCCCC--CChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCcchH
Q 005856 563 EKGKTIAAVKLLDFCLGRDCI--IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (673)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (673)
..|++++|+..++++++.++. .+...+..++.+|...|++++|++.++++++.. +.+...+..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999997521 235677899999999999999999999999875 34577788899999999999999
Q ss_pred HHHHHHHHhhhcc
Q 005856 641 DILSRMIRGEMSR 653 (673)
Q Consensus 641 ~~~~~~~~~~~~~ 653 (673)
....+......+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7776666655543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.4e-05 Score=75.05 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=28.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+..+..++.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444555555555555555444332 344444444455555555555554444443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=5.8e-05 Score=75.51 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHhccCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 493 SLFEDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.+...|++++|..++++.++. |.. | ...+++.++.+|...|++++|..++++.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345566666666666666543 111 1 123455666666666666666666665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=5.8e-05 Score=75.53 Aligned_cols=88 Identities=17% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHH
Q 005856 459 YLRKGEPADAKTALDSMIED---GHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDLVAK 524 (673)
Q Consensus 459 ~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~ 524 (673)
+...|++++|..++++.++. -+.|+ ..+++.+...|...|++++|..+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666655432 11111 234555566666666666666666665432 211 11 223445
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 005856 525 ILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
|+..|...|++++|..++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555554433
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00055 Score=70.35 Aligned_cols=134 Identities=7% Similarity=-0.034 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGK----------LNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 104 (673)
..++|++.++.++..+ |.+..+|+.-..++...|+ ++++...++.+.+.+++ +..+|..-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4556777787777776 6667777776666666665 66666666666665443 566666666666666
Q ss_pred C--CHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005856 105 G--IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG-RYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (673)
Q Consensus 105 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 173 (673)
+ ++++++..++++.+.. +.+..+|+....++.+.| .++++++.++++++.. +-+...|+.....+..
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 6 5566666666666654 345556666666666666 6666666666665553 2255556555544443
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.5e-05 Score=74.87 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
.|..+..+|.+.|++++|+..+++.++ ..|+ +..++.++...|++++|+..|+++++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455555555555555555555554 2333 2234444445555555555555555443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.0002 Score=58.09 Aligned_cols=111 Identities=8% Similarity=-0.161 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RGHVEEA 538 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 538 (673)
+++++|...|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777765 23222 5555666667777888888877764 55666777777776 6788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHc----cCChHHHHHHHHHHhcCC
Q 005856 539 LGRIDLMMQSGSVPNFDSLLSVLSE----KGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 581 (673)
++.+++..+.+..+....+...|.. .+++++|..+++++.+.+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888887776655555667777766 778888888888888775
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00012 Score=70.90 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=60.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCC--------------CCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCC
Q 005856 25 LVYNVLHGAKNSEHALQFFRWVERAGL--------------FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD 90 (673)
Q Consensus 25 ~~~~~l~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (673)
.+...+...|+++.|+..|+.+++... .+....+|..+..++.+.|++++|+..+++.++.... +
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~ 306 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N 306 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-h
Confidence 344577788888888888888876210 0223344555555555555555555555555544322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHH
Q 005856 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (673)
Q Consensus 91 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (673)
...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554432 123333444444444333333
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=3e-05 Score=60.23 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 522 VAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+..++..+...|++++|++.+++.++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~ 32 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLIT 32 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=0.0002 Score=55.89 Aligned_cols=76 Identities=16% Similarity=0.057 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+|++.+++.++ ..|+ +..++..+...|++++|+..+++++..++. ....|..++.+|...|++++|+..++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666776666 4444 334566666777778887777777776543 3455667777777778888877777776
Q ss_pred HHc
Q 005856 613 MEK 615 (673)
Q Consensus 613 ~~~ 615 (673)
+..
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00021 Score=55.25 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=68.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHH
Q 005856 555 DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-D----WKSSDKLIA 629 (673)
Q Consensus 555 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~ 629 (673)
..++..+...|++++|+..++++++..+. +...+..++.++.+.|++++|++.+++++...... + ...+..+..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 34677788999999999999999998754 56778899999999999999999999999864322 1 455566777
Q ss_pred HHHhcCCcchHH
Q 005856 630 GLNQEGNTKQAD 641 (673)
Q Consensus 630 ~~~~~g~~~~a~ 641 (673)
++...|+.++|.
T Consensus 87 ~~~~~~~~~~a~ 98 (111)
T 2l6j_A 87 AQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHCCCCCS
T ss_pred HHHHHHhHhhhH
Confidence 777777777663
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.00065 Score=50.03 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (673)
++..+...|++++|+..++++++..+. +...+..++.++.+.|++++|++.+++++... +.+...+..+..++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 344455566666666666666655432 34455567777777777777777777776653 2234444455555544
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00043 Score=53.97 Aligned_cols=80 Identities=6% Similarity=-0.062 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005856 38 HALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIM 117 (673)
Q Consensus 38 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 117 (673)
.|+..|+.+.+.+ |.+...+..+..++...|++++|...|+..++..+. +...+..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788887766 677888888888888888888888888888776543 5777788888888888888888888887
Q ss_pred HHc
Q 005856 118 KQL 120 (673)
Q Consensus 118 ~~~ 120 (673)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00025 Score=53.57 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005856 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.++..+...|++++|+..++++++.+|. ....|..++.+|...|++++|++.++++++
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555566667777777777777766544 344566677777777777777777777664
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=0.00018 Score=58.48 Aligned_cols=86 Identities=8% Similarity=-0.027 Sum_probs=62.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLN----------HARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
+.+.+++|++.++.+.+.+ |.+..+|..+..++...++++ +|+..|++.++.++. +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4567899999999999987 789999998988988887754 777777777666543 566666677776
Q ss_pred HhcC-----------CHHHHHHHHHHHHHc
Q 005856 102 GKKG-----------IVQESVKIFDIMKQL 120 (673)
Q Consensus 102 ~~~~-----------~~~~a~~~~~~~~~~ 120 (673)
...| ++++|...|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6553 566666666666553
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.40 E-value=0.00045 Score=56.14 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=69.5
Q ss_pred HccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD----------SAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
.+.+.+++|...++...+..|.++..|+.+..++...++++ +|+..|++..+.+.. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 35567889999999999999999999999999988887654 788888887775322 5667777777777
Q ss_pred hcC-----------ChHHHHHHHHHHHHcCCCCchhhHHH
Q 005856 461 RKG-----------EPADAKTALDSMIEDGHSPASSLFRS 489 (673)
Q Consensus 461 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~ 489 (673)
..| ++++|+..|++.++. .|+...|..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 654 566666666666653 355444433
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.37 E-value=0.0017 Score=47.64 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 005856 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (673)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (673)
..+..+...+...|++++|...+++..+..+.++.++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666777777777766666666666666666666666666666666666665542 123444444444443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0017 Score=48.89 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (673)
..+..+...+...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444555555555555555544333 33344445555555555555555554444
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.00043 Score=52.15 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 492 ESLFEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
..+...|++++|...++++++..+. +.. .+..++.+|...|++++|++.+++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445556666666666666655433 344 555556666666666666666666555
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0014 Score=64.27 Aligned_cols=84 Identities=12% Similarity=-0.067 Sum_probs=44.0
Q ss_pred cCCCHHHHHHHHHHHHh---CCCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcC-----CCCCC--hHhHHHHH
Q 005856 531 MRGHVEEALGRIDLMMQ---SGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID--LASYEKVL 593 (673)
Q Consensus 531 ~~g~~~~A~~~~~~~~~---~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~~~~l~ 593 (673)
..|++++|+.++++.++ .-+.|+ ...++.+|...|++++|+.+++++++. |+... ...|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34566666666665554 122222 233455555566666666666665532 22211 33455666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 005856 594 DALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 594 ~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.+|...|++++|+..++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666666553
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0022 Score=62.96 Aligned_cols=84 Identities=14% Similarity=0.004 Sum_probs=43.1
Q ss_pred ccCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-----C-CCCCC----HHHHH
Q 005856 496 EDGRVQTASRVMKSMVEK-----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMMQ-----S-GSVPN----FDSLL 558 (673)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~~p~----~~~~~ 558 (673)
..|++++|..++++.++. |.. | ...+++.++.+|...|++++|+.++++.++ . +..|+ +..++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345566666666655542 111 1 123455566666666666666666655553 1 12233 23355
Q ss_pred HHHHccCChHHHHHHHHHHhc
Q 005856 559 SVLSEKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~ 579 (673)
.+|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555556666666666665544
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.019 Score=51.49 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHc-----cCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh-cCCh
Q 005856 535 VEEALGRIDLMMQSGSVPNF------DSLLSVLSE-----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AGKT 602 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~~------~~~~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~ 602 (673)
...|...+++.++ +.|++ ..++..|.. -|+.+.|.++|+++++.+|..+..++..+++.|+. .|++
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4777788888888 77773 335556665 48999999999999998775446666678888888 4889
Q ss_pred HHHHHHHHHHHHcCCC--CCHHH
Q 005856 603 LNAYSILFKIMEKGGV--TDWKS 623 (673)
Q Consensus 603 ~~A~~~~~~~~~~~~~--~~~~~ 623 (673)
++|.+.+++++.-+.. |++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH
Confidence 9999999999887655 55543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.021 Score=53.63 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=18.7
Q ss_pred CCCCHHhHHHHHHHHHh--c---CChhHHHHHHHHHHhC
Q 005856 410 GVLDPVAFNNLIRGHSK--E---GNPDSAFEIVKIMGRR 443 (673)
Q Consensus 410 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~ 443 (673)
.+.++..|...+++... . .+..+|..+|+++.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l 228 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 35566666666554432 2 2235666677766664
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0077 Score=59.26 Aligned_cols=87 Identities=15% Similarity=-0.028 Sum_probs=56.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhC---CCCCC-------HHHHHHHHHccCChHHHHHHHHHHhcC-----CCCCC--hHhHH
Q 005856 528 ALLMRGHVEEALGRIDLMMQS---GSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID--LASYE 590 (673)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~~---~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~~~ 590 (673)
.+...|++++|+.++++.++. -+.|+ ...++.+|...|++++|+.++++++.. |+... ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777777766652 12233 234555666677777777777766642 22211 45567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 005856 591 KVLDALLAAGKTLNAYSILFKIME 614 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~~ 614 (673)
.|+.+|...|++++|+..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888888775
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0046 Score=60.87 Aligned_cols=93 Identities=16% Similarity=-0.042 Sum_probs=72.2
Q ss_pred HHHHccCChHHHHHHHHHHhcCC---CCCC----hHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CC-CCHHHH
Q 005856 559 SVLSEKGKTIAAVKLLDFCLGRD---CIID----LASYEKVLDALLAAGKTLNAYSILFKIMEK-----G-GV-TDWKSS 624 (673)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-----~-~~-~~~~~~ 624 (673)
..+...|++++|+.+++++++.. ..++ ..+++.++.+|...|++++|+.++++++.- | .. .....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557899999999999998642 2222 456789999999999999999999998862 1 12 235677
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhhh
Q 005856 625 DKLIAGLNQEGNTKQADILSRMIRGEM 651 (673)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (673)
+.|...|...|++++|..+.++..+.-
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 789999999999999987766666554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0056 Score=45.79 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=42.8
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLA-SYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+..+...|++++|+..++++++..+. +.. .+..++.+|...|++++|++.++++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445566777888888888877776543 344 66677888888888888888888877754
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.78 E-value=0.025 Score=53.20 Aligned_cols=48 Identities=6% Similarity=-0.087 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHH--cc---CCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHH
Q 005856 378 MEASSYNPMIQHLC--HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (673)
Q Consensus 378 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (673)
.+...|...+.+.. .. ....+|..+|++..+..|.....+..+..+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35566776665543 22 34588999999999998888888877666665
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.78 E-value=2e-07 Score=88.34 Aligned_cols=264 Identities=11% Similarity=0.118 Sum_probs=159.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 005856 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (673)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (673)
.+..|..|..+....++..+|++-|-+. -|+..|..++.+..+.|.+++-..++....+..- +...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3456777777777777777776544321 2455677778888788888887777776665533 3344456777
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 005856 205 GYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE 284 (673)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 284 (673)
+|++.++..+-++++ -.||..-...+..-|...|.++.|.-+|..+.. |..+...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 888877766544432 135666666777777777777777666654432 2334445566677666
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (673)
|.+.-+ ..+++.+|..+..+|...+++..|.-.--.++-. ++ ....++..|-..|-+++.+.+++..+
T Consensus 189 AVdaAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 189 AVDGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp STTTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 554322 2347778888888888888887766554444321 22 23345666778888888888888774
Q ss_pred HchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC-CC-------CHHhHHHHHHHHHhcCChhHHH
Q 005856 365 EKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VL-------DPVAFNNLIRGHSKEGNPDSAF 434 (673)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~~~~~~A~ 434 (673)
.. -+.....|+-|.-.|++- ++++-.+.++.....- .| ....|..++-.|.+-.+++.|.
T Consensus 257 gl---------ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL---------ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS---------TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC---------CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 21 123555677777777664 3444444444432221 11 2334556666666666666553
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.68 E-value=0.01 Score=47.63 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDG---RVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
.+.+.|.+....+. ++..+...+..++++++ +.++++.+|+...+.+ +.-+...+..+.-++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444554444343 55555556666666666 5557777777777764 2113455566777777777777777777
Q ss_pred HHHHhCCCCCCH
Q 005856 543 DLMMQSGSVPNF 554 (673)
Q Consensus 543 ~~~~~~~~~p~~ 554 (673)
+.+++ ..|++
T Consensus 95 ~~lL~--ieP~n 104 (152)
T 1pc2_A 95 RGLLQ--TEPQN 104 (152)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHh--cCCCC
Confidence 77777 66664
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.014 Score=42.91 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.++|..++++.++.++. +...+..+...+.+.|++++|+..|+++++
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35555555555554443 444444455555555555555555555554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.084 Score=57.51 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=21.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSM 475 (673)
Q Consensus 425 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 475 (673)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3345555555443221 23445555555555555555555555544
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.18 Score=54.82 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=10.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHH
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQ 405 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~ 405 (673)
.|..+...+.+.++++.|.+.|.+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444444444444443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.016 Score=46.46 Aligned_cols=81 Identities=9% Similarity=-0.083 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHccC---ChHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHH
Q 005856 535 VEEALGRIDLMMQSGSVPN---FDSLLSVLSEKG---KTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYS 607 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~ 607 (673)
...+.+-|.+..+.+. ++ ...+.+++.+.. +.++++.+++..++.+ |......+..++-++++.|+|++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4555666665555433 34 345778888877 6679999999888875 21234555678888999999999999
Q ss_pred HHHHHHHcC
Q 005856 608 ILFKIMEKG 616 (673)
Q Consensus 608 ~~~~~~~~~ 616 (673)
.++++++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999988764
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.35 E-value=0.031 Score=42.12 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKG------VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.....+...+...|+++.|..+|+.+.+.. ..+....+..+..++.+.|++++|+.+++++.+ ..|+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 334455666666777777777777766541 112455666777777777777777777777776 556543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.28 E-value=0.023 Score=42.84 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=48.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCC-----C-CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRD-----C-IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
...++..+...|++..|...++.+++.. . ......+..++.++.+.|++++|+..++++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4567778888899999999988888642 1 1235667788888889999999999988888653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.28 E-value=0.13 Score=46.25 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-CChH
Q 005856 143 MMAKRYFNKMLSEGIEPT---RHTYNVMLWGFFLS-----LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRF-KKMD 213 (673)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~ 213 (673)
..|..++++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555543 233 33555555555552 66666666666666553322345555555555553 6666
Q ss_pred HHHHHHHHHHHCC
Q 005856 214 EAEKLFAEMKEKN 226 (673)
Q Consensus 214 ~a~~~~~~~~~~~ 226 (673)
.+.+.+++.....
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 6666666665543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.20 E-value=0.048 Score=39.94 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005856 90 DEDMFEVLIESYGKKGI---VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (673)
Q Consensus 90 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (673)
++..+..+..++...++ .++|..++++..+.. +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433322 455555555555543 334444555555555555555555555555544
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.37 Score=39.74 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=58.5
Q ss_pred ChHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Q 005856 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (673)
Q Consensus 22 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 101 (673)
++..-+......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|....+ +..+.-.|
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHH
Confidence 4445555666666666666665543 2455666666666666666666666665543 22333344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 005856 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (673)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (673)
.-.|+.+....+-+.....| -++.....+...|+++++.++|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555554444443332 234444444555666666666544
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.95 E-value=2.3 Score=45.61 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=71.0
Q ss_pred HHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCChH
Q 005856 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY--ICLIESYLRKGEPA 466 (673)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~ 466 (673)
.+.-.|+.+....++..+.+....+..-...+.-++...|+.+.+..+.+.+... ..|....- .++..+|+..|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 3445566666666666655443222222233333344566777777776666653 11111111 12334455666666
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRIDLM 545 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 545 (673)
....++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+. ..|.+..-..++-+....|+. .+|++++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666666531 122222222222333445544455555444332 223333323333333444443 4566666666
Q ss_pred H
Q 005856 546 M 546 (673)
Q Consensus 546 ~ 546 (673)
.
T Consensus 656 ~ 656 (963)
T 4ady_A 656 T 656 (963)
T ss_dssp H
T ss_pred c
Confidence 5
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.27 Score=40.52 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=62.8
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.. |+..+.-.|.-.|+.+.-.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHH
Confidence 345567777777766654 256677777777777777777777766543 35555555666677666666
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHH
Q 005856 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (673)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~ 611 (673)
+.+.+...+ .++.....+.-.|+++++++++.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666555443 233444556667777777777654
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.65 E-value=0.19 Score=39.62 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNP------DSAFEIVKIMGRRGVPRDAD-AYICLIE------SYLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 477 (673)
+.|+.+|-..+...-+.|++ ++.+++|+++... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556666666666555666 5666666665553 444321 1111111 11233566666666666654
Q ss_pred cCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005856 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE 517 (673)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 517 (673)
..-.- ...|.....--.+.|+...|.+++.+.+..+++|
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 31111 3334333343445666666666666666665553
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.53 E-value=0.085 Score=40.60 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005856 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT---ASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (673)
Q Consensus 467 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (673)
.+.+.+......|. ++..+-..+..++.++.+... ++.+++.+...+ +.-.......++-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444433333 455554455556666655544 666666665543 1113344455666677777777777777
Q ss_pred HHHHhCCCCCCH
Q 005856 543 DLMMQSGSVPNF 554 (673)
Q Consensus 543 ~~~~~~~~~p~~ 554 (673)
+.+++ ..|++
T Consensus 98 ~~lL~--~eP~n 107 (126)
T 1nzn_A 98 RGLLQ--TEPQN 107 (126)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHH--hCCCC
Confidence 77777 66653
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.49 E-value=0.12 Score=40.80 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCHHhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCchh-hHHHHHH------HHhccCCHHHHHHHHHHHHHc
Q 005856 447 RDADAYICLIESYLRKGEP------ADAKTALDSMIEDGHSPASS-LFRSVME------SLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~ 513 (673)
.|..+|-..+....+.|++ ++..++|++... .++|+.. .|...+. .+...+|.++|..+|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888888 788888888876 3555431 1111111 123346777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 005856 514 GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (673)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (673)
+-+. ...|...+..-.+.|+.+.|.+++.+.+..+.+|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3332 55566666666677777777777777776554443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.48 E-value=0.11 Score=39.94 Aligned_cols=61 Identities=8% Similarity=-0.098 Sum_probs=41.3
Q ss_pred HHHHHHHccCChHH---HHHHHHHHhcCC-CCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKGKTIA---AVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++++.+.....+ ++.+++..+..+ +.........++-++++.|+|.+|.+.++.+++..
T Consensus 40 ~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 40 EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45666666554444 777777666653 11123444578888999999999999999988764
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.53 E-value=6.2 Score=42.37 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=128.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCC--------CCHHhH
Q 005856 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV--------LDPVAF 417 (673)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~ 417 (673)
+....|+.++++.++...+.. .....+....-..+.-+....|..+.+..++........ +....-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~------~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPG------SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTT------SCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHH
Confidence 455678888887777665310 001112222223333344555555567777766654321 111122
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH--H
Q 005856 418 NNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYI--CLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM--E 492 (673)
Q Consensus 418 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~ 492 (673)
.++.-+++..|. -+++.+.+..+....- +...... .+...+.-.|+.+-...++..+.+. .+......+. -
T Consensus 457 AaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgL 532 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHH
Confidence 333333333332 2355566655554311 1111122 2333344667777777777776653 2222333333 3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHccCCh
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPNF---DSLLSVLSEKGKT 567 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~~~~~~g~~ 567 (673)
++...|+.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+. ..+.-++...|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 444678888888887777653 22222221 234456667788766666888777631 1111 1122223345666
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcC
Q 005856 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKT-LNAYSILFKIMEKG 616 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~~A~~~~~~~~~~~ 616 (673)
+.+..+++.....+ +|....-..++-++...|+. .+|+..+.++....
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 66666666444432 33333223444555555554 67888888887543
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.19 E-value=6.4e-05 Score=71.66 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=58.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 491 (673)
.++.||..+-.+|...+.+.-|.-.--.+.-+ | .....++..|-..|-+++-+.+++..... -.....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 45566777777777776666654443333321 1 12223455566667777766666665521 123444555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 492 ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRID 543 (673)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (673)
-.|++- ++++-++.++....+ +++ .++++|.+.--|.+++-++.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHh
Confidence 555443 344444444433222 221 24455555555555554443
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.97 E-value=1.7 Score=33.64 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=39.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005856 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (673)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 445 (673)
.....++.....|..+.-.+++..+....++++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444555555666666666666665544466666666666666666666666666666666654
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=5.5 Score=39.17 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHH----Hh
Q 005856 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH----SK 426 (673)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 426 (673)
|+++.|++.+-.+.+... ..............++..|...++++...+.+..+.+...........+++.+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r---~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTR---QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHS---SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567777776655544321 23334445667788889999999999988887776655433333334444333 22
Q ss_pred cCChhHH--HHHHHHHHh--CC-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hhhHHHHHHH
Q 005856 427 EGNPDSA--FEIVKIMGR--RG-VPR---DADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMES 493 (673)
Q Consensus 427 ~~~~~~A--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~ 493 (673)
....+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+...-...+ ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3332221 111111111 01 111 123345677888888999999999988763311121 2245555677
Q ss_pred HhccCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 494 LFEDGRVQTASRVMKSMVEK----GVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
|...+++..|..+++++... ...|+ ...+...+..+...+++.+|-+.|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999998888887532 22222 13345566667778888888877766654
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.67 E-value=2 Score=33.66 Aligned_cols=73 Identities=7% Similarity=0.030 Sum_probs=48.8
Q ss_pred CCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.|+..+--.+..++.++.+ ..+++.+++.+...++.-.......++-++.+.|++++|.++.+.+++ ..|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 3555555555556665554 446777777777765543455666677788888888888888888888 777743
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.35 E-value=1.1 Score=34.59 Aligned_cols=73 Identities=7% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCchhhHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 005856 481 SPASSLFRSVMESLFEDGR---VQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (673)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (673)
.|+..+--.+..++.++.+ ..+++.+++.+.+.++.-....+..++-++.+.|++++|.+..+.+++ ..|++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 3455554445555555544 345777777777665433455666677777788888888888887777 667643
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.91 E-value=1.1 Score=46.83 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=45.9
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
.|...|+++.|+.+.++++...|. ++.+|..|+.+|.+.|+++.|+-.+..+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344689999999999999997543 79999999999999999999999988875
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.58 E-value=11 Score=38.86 Aligned_cols=447 Identities=10% Similarity=0.016 Sum_probs=207.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR 208 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 208 (673)
|.....+ .+.|++..+..+...+....+. .-..|..+.... ......++..++.+.... +.....-...+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 4444443 3457777666665554322111 111222222111 222445554444443322 2222334455566666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005856 209 FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (673)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 288 (673)
.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|.
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~------- 151 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK------- 151 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC-------
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC-------
Confidence 7777666554432 12344444445566666777666666666554443 2222333344444333332
Q ss_pred HHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHch
Q 005856 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH-YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (673)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (673)
.. ...++.. +......|+...|..+...+ +++... ...++..+ .+...+.......
T Consensus 152 ---------lt-~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~---~~p~~~~~~~~~~---- 208 (618)
T 1qsa_A 152 ---------QD-PLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLA---NNPNTVLTFARTT---- 208 (618)
T ss_dssp ---------SC-HHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHH---HCGGGHHHHHHHS----
T ss_pred ---------CC-HHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHH---hChHhHHHHHhcc----
Confidence 21 1122222 23344556666666554432 222211 12222222 1223333222211
Q ss_pred hccCCCCCCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHH----HHHhcCChhHHHHHHHHHHhC
Q 005856 368 IILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR----GHSKEGNPDSAFEIVKIMGRR 443 (673)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~ 443 (673)
... ..+...+...+.-..+ .+.+.|...+....+....+......+-. .....+...++...+......
T Consensus 209 ----~~~--~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 209 ----GAT--DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp ----CCC--HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred ----CCC--hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 000 0011112222223333 37788888888876655334443333322 233334345566666655443
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005856 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (673)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (673)
. .+.......+....+.|+++.|...|..|..... ....-...+..++...|+.++|..+|..+.+. . ..|.
T Consensus 282 ~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg 353 (618)
T 1qsa_A 282 S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYP 353 (618)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHH
T ss_pred C--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHH
Confidence 2 3333344444555567888888888887754211 12333445566777788888888888888652 1 2233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 005856 524 KILEALLMRGHVEEALGRIDLMMQSGSVPN---------FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLD 594 (673)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 594 (673)
.+.. .+.|..-. . ......+. ....+..+...|...+|...+...... .+......++.
T Consensus 354 ~lAa--~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MVAA--QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (618)
T ss_dssp HHHH--HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HHHH--HHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHH
Confidence 2221 22332100 0 00001111 112344566788888888888766653 23333345666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCcchHHHH
Q 005856 595 ALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADIL 643 (673)
Q Consensus 595 ~l~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (673)
.....|.++.++....+....... .-+..+..++..+.+.-..+.+...
T Consensus 422 ~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~ 472 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAM 472 (618)
T ss_dssp HHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHH
Confidence 667788888877665432211100 0011234466666655556655443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.59 Score=48.92 Aligned_cols=49 Identities=16% Similarity=-0.050 Sum_probs=39.5
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005856 585 DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (673)
Q Consensus 585 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (673)
+..-|..||....+.+.++||.+.|+..+... .++.++..|+..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcC
Confidence 34557788888888999999999999988753 57888888998888776
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.34 E-value=1.1 Score=36.36 Aligned_cols=130 Identities=11% Similarity=0.104 Sum_probs=71.1
Q ss_pred CCCCchh--hHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 479 GHSPASS--LFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-------LDLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 479 ~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
|+.|... ++..-+..+...|.++.|+-+.+.+... +.+|+ ..++..++.++...|++.+|...|++.++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 3444566778888999988888876654 22223 134556778888899999999988886651
Q ss_pred -CCCCCHHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 549 -GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 549 -~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
..-|..........-...... ..+...+.+.-..++.+|.+.|++++|+.+++.+..+.-
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHCC-----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHhcCCCccccccccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 111111100000000000000 001122344545799999999999999999998776543
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.03 E-value=3.4 Score=31.97 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005856 232 ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (673)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 297 (673)
......+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555556666655555554322 245555556666666666666666666666555543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.51 E-value=0.81 Score=37.02 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
+.-..+..||...|++++|+.+++.+-.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3434466666677777777766665433
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.36 E-value=1.7 Score=48.92 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 005856 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENL----DLVAKILEALLMRGHVEEALGRIDLMMQS 548 (673)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 548 (673)
|..++..+.+.|.++.+.++-+.+++.....+. ..|..+...+...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 445555566666666666666655554221121 24556666666666666666666555443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.94 E-value=2.2 Score=32.97 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=44.3
Q ss_pred HHHHHHHccC---ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 556 SLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 556 ~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++++.+.. +..+++.+++..++.++......+..++-++++.|+|.+|.+.++.+++..
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4666777654 446788888887776543335555678888889999999999988888754
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.63 E-value=5 Score=45.21 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT----RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMI 203 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (673)
-|..++..+.+.+.++.+.++-...++...+-+ ...|..+.+.+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 456677777777777777776665544321111 12466777777778888888777777765533 234444555
Q ss_pred HHHHcC------------CChHHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHHhcCCHHHHHH-HHHHHH
Q 005856 204 NGYNRF------------KKMDEAEKLFAEMKEKN-IEPTVISY-TTMIKGYVAVERADDALR-IFDEMK 258 (673)
Q Consensus 204 ~~~~~~------------~~~~~a~~~~~~~~~~~-~~~~~~~~-~~ll~~~~~~~~~~~a~~-~~~~~~ 258 (673)
..++.. |..++..+++....+.. ...+...| ..|=.-+...|++..|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 444433 44556666665433211 00111234 444444556677765544 445443
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.03 E-value=8.9 Score=33.98 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHccCChHHHHH
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVK 572 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~ 572 (673)
.+.+.|+.+++++....-++..+. |...-..++..++-.|+|++|.+-++...+ ..|+.......|... =.|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~l---I~aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHL---VKAAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH---HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHH---HHHHH
Confidence 456677788888777777777655 666667777777888888888877777776 666655444444221 11222
Q ss_pred HHHHHhcCCCCC-----ChHhHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 005856 573 LLDFCLGRDCII-----DLASYEKVLDALLA--AGKTLNAYSILFKIMEK 615 (673)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~l~~~l~~--~g~~~~A~~~~~~~~~~ 615 (673)
.-+....-+-.| .......++.++.. .|+.++|.+.-.++.+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222221111 23333445555443 57777777777777654
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.01 E-value=6.9 Score=37.39 Aligned_cols=165 Identities=8% Similarity=0.066 Sum_probs=99.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhH-
Q 005856 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLF- 487 (673)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~- 487 (673)
......|...|.+.|+.++..+++...... +.-|- ......+++.+.... ..+.-.++..+.++... .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 356778889999999999988888877542 11122 234556777776543 33444444444443110 122333
Q ss_pred -----HHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--C--CCCC
Q 005856 488 -----RSVMESLFEDGRVQTASRVMKSMVEK--GVKEN---LDLVAKILEALLMRGHVEEALGRIDLMMQS--G--SVPN 553 (673)
Q Consensus 488 -----~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~p~ 553 (673)
..++..|...|++.+|.+++.++.+. ..... .+.+-.-+..|...|++.++...+...... . .+|.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25667788888888888888888775 22211 233445566777888888888887766542 1 2232
Q ss_pred HHH-----HHHHHH-ccCChHHHHHHHHHHhc
Q 005856 554 FDS-----LLSVLS-EKGKTIAAVKLLDFCLG 579 (673)
Q Consensus 554 ~~~-----~~~~~~-~~g~~~~A~~~~~~~~~ 579 (673)
... -+-.+. ..+++++|...|-.+.+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222 222334 67888888888766653
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.85 E-value=6 Score=31.03 Aligned_cols=62 Identities=11% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHHHHHHHccC---ChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 555 DSLLSVLSEKG---KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 555 ~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
..+.+++.+.. +..+++.+++..+..++.........++-++++.|+|.+|.++++.+++..
T Consensus 43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34777777654 456788888888876554445555678899999999999999999988764
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.27 E-value=2.1 Score=41.24 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 005856 129 YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNTM 202 (673)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 202 (673)
...++..+...|++.++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456677778888888888887776652 44777888888888888888888888877653 4778877665443
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.98 E-value=26 Score=35.96 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHH
Q 005856 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (673)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (673)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Confidence 334455555666666655554332 12345555555555666666655555555444333 223334444544444
Q ss_pred HcC
Q 005856 138 RRG 140 (673)
Q Consensus 138 ~~g 140 (673)
+.|
T Consensus 148 ~~g 150 (618)
T 1qsa_A 148 ASG 150 (618)
T ss_dssp HTT
T ss_pred HCC
Confidence 443
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.56 E-value=3.2 Score=40.01 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHcCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHh
Q 005856 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADA 451 (673)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 451 (673)
++..+...|++..+...+..+....|.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344445555666666555555555555555566666666666666666655555432 255555443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.04 E-value=9.1 Score=27.79 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 176 KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
+.-+..+-++.+....+.|+..+..+.+++|.+.+++..|.++|+.++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666666666666666543
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.69 E-value=35 Score=33.43 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=65.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCC
Q 005856 304 VFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE-----AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (673)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (673)
....|...+...|++.+|..++..+...-...+ ...+...++.|...+++..|..++.++...... ....|
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~----~~~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK----NPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----SSCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc----cCCcH
Confidence 445677788888888888888888754211111 234556677888999999999998887432211 11112
Q ss_pred c--hhhHHHHHHHHHccCCHhHHHHHHHHHHHc
Q 005856 379 E--ASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409 (673)
Q Consensus 379 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (673)
+ ...+...+..+...+++..|...|..+...
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 1 234556666777788888887777766543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.53 E-value=16 Score=32.45 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=64.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCH
Q 005856 458 SYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHV 535 (673)
Q Consensus 458 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 535 (673)
...+.|++++|+..+..-++.. +.|...-..++..+|-.|++++|.+-++...+..+.. ....|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3456777777777777777643 3455555566777777888888888777777764431 12233333322
Q ss_pred HHHHHHHHHHHhCCCCCC--------HHHHHHHHH--ccCChHHHHHHHHHHhcCC
Q 005856 536 EEALGRIDLMMQSGSVPN--------FDSLLSVLS--EKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~--------~~~~~~~~~--~~g~~~~A~~~~~~~~~~~ 581 (673)
...=.++...+..|. ...++.++. ..|+.++|..+-..+.+.-
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 122223333333332 223444444 4688888888877776653
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.59 E-value=5.2 Score=33.61 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCC
Q 005856 535 VEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (673)
Q Consensus 535 ~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (673)
..++.++|..|...++--. +..++..+...|++++|..+++.+++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445555555544443333 2233334444555555555555555443
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.16 E-value=13 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=18.2
Q ss_pred CCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
...|++....+.+.+|.+.+++..|.++++.++...
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555544443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.87 E-value=17 Score=28.01 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 005856 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (673)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 225 (673)
-+..+-++.+...++.|+..+....+.+|.+.+|+..|.++|+-++.+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 345555666666666677777777777777777777777777766643
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.95 E-value=38 Score=31.34 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHH
Q 005856 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (673)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 490 (673)
.-++.....+...|.+.+++.+|...|= . |-.+++..+..++--+...+...++ +......+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH
Confidence 3577777888888888888888877762 2 2233445554444444333322222 22222233
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 005856 491 MESLFEDGRVQTASRVMKSMVE 512 (673)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~ 512 (673)
+ -|.-.++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 3 24556788888877766554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.39 E-value=12 Score=36.62 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=65.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHH-
Q 005856 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLVA- 523 (673)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~- 523 (673)
.++..+...|.+.|++++|.+.+.++......+ -...+...++.+...+++..+...++++... +..|+.....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 467778888999999999999999988643222 2445667777888889999999888887654 3333222111
Q ss_pred -HHHHHHHcCCCHHHHHHHHHHHHh
Q 005856 524 -KILEALLMRGHVEEALGRIDLMMQ 547 (673)
Q Consensus 524 -~l~~~~~~~g~~~~A~~~~~~~~~ 547 (673)
.-+..+...+++.+|-..|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223456788888777666554
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.63 E-value=40 Score=30.88 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=18.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHH
Q 005856 412 LDPVAFNNLIRGHSKEGNPDSAFEIV 437 (673)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 437 (673)
.++.....+...|.+.+++.+|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 46667777777777777777776655
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.63 E-value=43 Score=30.69 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=17.2
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6666777777777777777766655
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.47 E-value=28 Score=33.94 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCchhhH--H
Q 005856 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIESYLRKGEPADAKTALDSMIED---GHSPASSLF--R 488 (673)
Q Consensus 416 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~ 488 (673)
+...++..|.+.|++++|.+.+.++... +..--...+-..++.+...+++..+...+.+.... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566667777777777777777766652 22223455666677777777777777777665422 222222111 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc
Q 005856 489 SVMESLFEDGRVQTASRVMKSMVEK 513 (673)
Q Consensus 489 ~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (673)
.-+..+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112244567888887777766554
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.26 E-value=46 Score=30.80 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.2
Q ss_pred cHHhHHHHHHHHhccCChHHHHHHH
Q 005856 301 DNSVFMKLLGVQCKSGHLNAAADVL 325 (673)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~ 325 (673)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6667777777777777777776665
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.93 E-value=20 Score=25.91 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005856 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (673)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 113 (673)
...++|..+-+|+...+ . ...+--+-+..+.+.|+|++|..+.+.+. .||...|..+.. .+.|-.+.+...
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 36788888888887654 2 22233333445678888888887776654 467776666543 477888888887
Q ss_pred HHHHHHcCCccCHhhH
Q 005856 114 FDIMKQLGVERSVKSY 129 (673)
Q Consensus 114 ~~~~~~~g~~~~~~~~ 129 (673)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777655 3444343
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.31 E-value=21 Score=25.85 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005856 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIF 114 (673)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 114 (673)
..++|..+-+|+...+ . ...+--+-+..+.+.|+|++|..+.+.+. .||...|..+.. .+.|-.+.+...+
T Consensus 22 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 6788888888887654 2 22223333445678888888888877665 367776666543 4677777777777
Q ss_pred HHHHHcCCccCHhhH
Q 005856 115 DIMKQLGVERSVKSY 129 (673)
Q Consensus 115 ~~~~~~g~~~~~~~~ 129 (673)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7777655 3443333
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.67 E-value=27 Score=26.96 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=18.6
Q ss_pred CCCCchhhHHHHHHHHHccCCHhHHHHHHHHHHHcC
Q 005856 375 TLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (673)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (673)
...|++....+.+.+|.+.+++..|.++|+-++...
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 334555555555555555555555555555554443
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.40 E-value=15 Score=29.33 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005856 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 619 (673)
.++..+|+.+...++... ...|...+..|-..|++.+|.++++..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346777777777765544 4445666677777788888888887777765443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.83 E-value=29 Score=29.21 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 005856 279 AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (673)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (673)
.+.......+|..|...++-..-...|......+...|++.+|..+|..-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567777777777776666566677777777777777777777777777665555
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.11 E-value=25 Score=25.39 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=34.8
Q ss_pred HHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
.+...|+|++|..+.+ ..+.|+.+.| ++-+-++.|-...+...+.++-.++.
T Consensus 48 SLmNrG~Yq~Al~l~~----~~c~pdlepw--~ALce~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 48 SLANQGRYQEALAFAH----GNPWPALEPW--FALCEWHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHHHTTCHHHHHGGGT----TCCCGGGHHH--HHHHHHHTTCHHHHHHHHHHHHTCSS
T ss_pred HHHcchhHHHHHHhcC----CCCCchHHHH--HHHHHHhcccHHHHHHHHHHHHhCCC
Confidence 3556888888876654 3345566655 44555688888888888877776653
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.77 E-value=10 Score=30.71 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005856 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (673)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 619 (673)
+++..+|+.+...++... ...|...+..|-..|++.+|.++|...++.+-.|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 345666666666665544 4445666666667777777777777777765433
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.74 E-value=26 Score=25.37 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 561 LSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 561 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
+...|+|++|..+.+ ..+.|+.+.| ++-+-++.|-...+...+.++-.++
T Consensus 50 LmNrG~Yq~Al~l~~----~~c~pdlepw--~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGN----KLAYPDLEPW--LALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHT----TSCCGGGHHH--HHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcC----CCCCchHHHH--HHHHHHhcccHHHHHHHHHHHHhCC
Confidence 456788888877755 2345555555 4445567788887777776766655
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.52 E-value=13 Score=31.93 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=43.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 005856 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (673)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 619 (673)
+..+.-.|++. .+++..+|+.+...++... ...|...+..|-..|++.+|.++|+..++.+-.|
T Consensus 119 yLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 119 YLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33344444443 3577778888887776654 4556677777778888888888888888776544
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.71 E-value=50 Score=26.33 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (673)
...+|..|..+++-..-...|......+...|++.+|..+|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777777776666566667777777777777777777777777665555
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.29 E-value=1e+02 Score=29.42 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=56.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCchhhHHHH-
Q 005856 419 NLIRGHSKEGNPDSAFEIVKIMGRR--GVPRD---ADAYICLIESYLRKGEPADAKTALDSMIED--GHSPASSLFRSV- 490 (673)
Q Consensus 419 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 490 (673)
.++..|...|++.+|.+++..+.+. ..... ...+..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5777888888888888777777652 11111 234555566777788888887777766532 222333222111
Q ss_pred ---HHHHh-ccCCHHHHHHHHHHHHH
Q 005856 491 ---MESLF-EDGRVQTASRVMKSMVE 512 (673)
Q Consensus 491 ---~~~~~-~~g~~~~a~~~~~~~~~ 512 (673)
...+. ..++|.+|...|-+..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 12345 67888888777776653
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.60 E-value=79 Score=26.62 Aligned_cols=142 Identities=9% Similarity=-0.040 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
++...-...+..+.+.|.......+.+ +... ++..+-...+.++...++.+.. ..+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 456666666666666666443333333 3332 3566666666666666654332 33333332 35555555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
.++.+.|+.+ +...+..+.. .++..+-...+.++...+..+ +...+..+.. .++..+-...+.++.+.++
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 6666666533 3333333332 344444444455555555432 3333333332 2344444444444444443
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.15 E-value=70 Score=25.88 Aligned_cols=52 Identities=6% Similarity=-0.019 Sum_probs=37.6
Q ss_pred HHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 005856 285 VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336 (673)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (673)
...+|..|..+++-..-...|......+...|++..|..+|..-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566777777777666667777777777777888888888877777665553
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.04 E-value=82 Score=29.53 Aligned_cols=24 Identities=8% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 165 NVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 445555666666666666666543
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.73 E-value=1.1e+02 Score=29.63 Aligned_cols=125 Identities=16% Similarity=0.245 Sum_probs=52.4
Q ss_pred CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--H
Q 005856 479 GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD--S 556 (673)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~ 556 (673)
|++--...|..-...+...|++++|.++--.... |+--+..+.+.+-.+=...|+..--+.+|..+++.+.--... .
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlE 434 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLE 434 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhH
Confidence 4433344444445555666666666555443322 222244444333332223344444444555444433211111 1
Q ss_pred HHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005856 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (673)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 612 (673)
+......+|+.+-...++++- ....+. .|++.. +..+..-|..+|.++
T Consensus 435 l~r~vL~q~r~~llekWl~e~---KL~~SE----eLGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 435 LCRPVLQQGRKQLLEKWLKED---KLECSE----ELGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT---CSCCCH----HHHHHH-HHHCSHHHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHHhcC---CccccH----HhHhhh-hhcCHHHHHHHHHHc
Confidence 233333455555555554411 112222 233333 333555566665554
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.71 E-value=1.3e+02 Score=24.96 Aligned_cols=111 Identities=10% Similarity=-0.019 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHH
Q 005856 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (673)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 133 (673)
++...-...+.++...|.......+.+.+ .. ++..+-...+.++...++.+.. ..+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~~---~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-KD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-TC---SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-cC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 45555555555565555543333333333 21 3555555555555555544322 22222222 24555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005856 134 KLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (673)
Q Consensus 134 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (673)
.++.+.++.+ +...+..+.. .++..+-...+.++...++
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 5555555432 2222333322 2344444444444444444
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.58 E-value=2.1e+02 Score=31.39 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 005856 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSL 175 (673)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 175 (673)
-|..++..+-+.+-++.+.++-+..++.-.+-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5788899999999999999988887765222232 35667777666544
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.50 E-value=1.3e+02 Score=25.11 Aligned_cols=142 Identities=8% Similarity=-0.113 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005856 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (673)
Q Consensus 89 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 168 (673)
++...-...+..+.+.|..+....+ ..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L-~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPL-IKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHH-HHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4666666666666666663333333 33333 245555555566666666533 3333333332 34544445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005856 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (673)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 246 (673)
.++...++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5555555533 2233333332 235555555555555555432 3333333332 1344444444444444443
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.88 E-value=73 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=10.1
Q ss_pred hcCChHHHHHHHHHHHH
Q 005856 598 AAGKTLNAYSILFKIME 614 (673)
Q Consensus 598 ~~g~~~~A~~~~~~~~~ 614 (673)
+.|++.+|+..|.+.++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666665543
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.72 E-value=43 Score=23.68 Aligned_cols=27 Identities=37% Similarity=0.246 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005856 587 ASYEKVLDALLAAGKTLNAYSILFKIM 613 (673)
Q Consensus 587 ~~~~~l~~~l~~~g~~~~A~~~~~~~~ 613 (673)
..+...++.+.+.|+|++|++..+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345677888999999999988777655
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.88 E-value=89 Score=21.72 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=10.5
Q ss_pred hcCChHHHHHHHHHHHH
Q 005856 598 AAGKTLNAYSILFKIME 614 (673)
Q Consensus 598 ~~g~~~~A~~~~~~~~~ 614 (673)
+.|++.+|+..|.+.++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46666666666666553
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.61 E-value=2.1e+02 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCC
Q 005856 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK--MVEVQKVLREMVERYIPP 299 (673)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~ 299 (673)
...++.-|...++.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+...++-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 466778888889999999998888532111 12334444444444333 355677777777776654
No 290
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=36.77 E-value=45 Score=21.40 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=21.8
Q ss_pred CChHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCC
Q 005856 21 FDHNLVYNVLHGAK-NSEHALQFFRWVERAGLFNHD 55 (673)
Q Consensus 21 ~~~~~~~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~ 55 (673)
.........|...+ |++.|+..|..+...+.+|++
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 34445555666555 777777777777666545554
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.33 E-value=1.7e+02 Score=23.57 Aligned_cols=53 Identities=8% Similarity=-0.067 Sum_probs=29.7
Q ss_pred HhcCChHHHHHHHhhcccCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 005856 67 GRVGKLNHARCILLDMPKKGVQW--DEDMFEVLIE------SYGKKGIVQESVKIFDIMKQ 119 (673)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~ 119 (673)
...|++-+|-++|+.+-+....+ ....+..+|. .+.+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34477777777777766554444 3444555554 12345666666666666543
No 292
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.61 E-value=76 Score=25.64 Aligned_cols=68 Identities=7% Similarity=0.107 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccC--CCCCCHHHHHHHHHHHHhcC
Q 005856 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK--GVQWDEDMFEVLIESYGKKG 105 (673)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 105 (673)
+.+++-+...++..|.+.++.- ..++.++...+..-.|.++++.+.+. ++..+..+....+..+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 4444444444444434444432 22344444445555566666655544 44444444444444444444
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.54 E-value=1.7e+02 Score=23.50 Aligned_cols=51 Identities=2% Similarity=0.004 Sum_probs=29.2
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 005856 427 EGNPDSAFEIVKIMGRRGVPR--DADAYICLIE-S-----YLRKGEPADAKTALDSMIE 477 (673)
Q Consensus 427 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~~~ 477 (673)
.|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776553334 3445555555 2 2245666666666666543
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.04 E-value=1.8e+02 Score=25.58 Aligned_cols=10 Identities=10% Similarity=-0.050 Sum_probs=4.4
Q ss_pred HHcCCCHHHH
Q 005856 276 LCDAGKMVEV 285 (673)
Q Consensus 276 ~~~~~~~~~a 285 (673)
.++.|+.+.+
T Consensus 12 A~~~g~~~~v 21 (285)
T 1wdy_A 12 AVQNEDVDLV 21 (285)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 3444554433
No 295
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.76 E-value=1.8e+02 Score=23.24 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
.+....+++.+.+.|+-.|...-..++....+.| .....+-.++...|+.++. ....+..+.. ...+.|..+..+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~~--i~~al~~~~~-d~~~~a~~l~~k 120 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISREA--TEKAMREADI-DWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHHH--HHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHHH--HHHHHHHcCH-hHHHHHHHHHHH
Confidence 3445566666666666655555555555555433 1234555666666654432 2222222211 223344444443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCC
Q 005856 510 MVEKGVKENLDLVAKILEALLMRG 533 (673)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g 533 (673)
-......++......++..+.+.|
T Consensus 121 k~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 121 KYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 222212233444555666666666
No 296
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.65 E-value=1.2e+02 Score=21.62 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=7.7
Q ss_pred cCChHHHHHHHHHHH
Q 005856 599 AGKTLNAYSILFKIM 613 (673)
Q Consensus 599 ~g~~~~A~~~~~~~~ 613 (673)
.|++++|+..|.+.+
T Consensus 28 ~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 28 ESRYQQALVCYQEGI 42 (93)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 455555555555443
No 297
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=33.45 E-value=70 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=10.0
Q ss_pred HccCChHHHHHHHHHHh
Q 005856 562 SEKGKTIAAVKLLDFCL 578 (673)
Q Consensus 562 ~~~g~~~~A~~~~~~~~ 578 (673)
.+.|++++|+.++..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 45666666666655444
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.49 E-value=3.4e+02 Score=29.65 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHcCC
Q 005856 162 HTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV----VTYNTMINGYNRFK 210 (673)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 210 (673)
..|..++..+-+.+-++.+.++-+.+.+.--.-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36888999999999999999988888764222232 35666666665544
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.73 E-value=1.9e+02 Score=22.83 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
.+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 333334444555555555555544455555445555555553
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.64 E-value=3.7e+02 Score=26.17 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=68.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 005856 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (673)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 107 (673)
.+.....+.+.|+++..+ .+ +|-....|..-...+...|++++|..+.-..++ |+-.++.+.+.+-..=...|+.
T Consensus 337 yi~~~l~n~~lA~~lA~R---~~-LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~ 411 (494)
T 1bpo_A 337 YITNVLQNPDLALRMAVR---NN-LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQT 411 (494)
T ss_dssp HHHHTTCCHHHHHHHHHH---TT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSC
T ss_pred hhhhccCCHHHHHHHHHh---cC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCC
Confidence 355556778877655543 33 677777788888888899999999988877765 3444666665544433334555
Q ss_pred HHHHHHHHHHHHcCCccCHhhHHHHHHHHHHcCCHHHHHH
Q 005856 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKR 147 (673)
Q Consensus 108 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (673)
.-.+.+|..+.+.| ..+...--.+++.....|+.+-...
T Consensus 412 splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llek 450 (494)
T 1bpo_A 412 SPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEK 450 (494)
T ss_dssp CHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHH
Confidence 56666666666655 2333333334444444444443333
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.93 E-value=2.4e+02 Score=24.17 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 005856 283 VEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT 335 (673)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (673)
+....+|..|...++-..-...|......+...|++.+|..+|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35667888888887777677778888888888888888888888877766555
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.53 E-value=1.6e+02 Score=23.04 Aligned_cols=37 Identities=8% Similarity=-0.111 Sum_probs=17.2
Q ss_pred hcCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 005856 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (673)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 104 (673)
..+..-.|.++++.+.+.++..+..+....+..+...
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3344445555555555444444444444444444433
No 303
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=30.35 E-value=24 Score=19.10 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=11.4
Q ss_pred HHHhcCCcchHHHHHHHHH
Q 005856 630 GLNQEGNTKQADILSRMIR 648 (673)
Q Consensus 630 ~~~~~g~~~~a~~~~~~~~ 648 (673)
=|+..|..++|+.+...++
T Consensus 11 YYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 11 YYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHTCHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 3566666666666655544
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.97 E-value=1.8e+02 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=10.2
Q ss_pred HHhcCChHHHHHHHhhc
Q 005856 66 LGRVGKLNHARCILLDM 82 (673)
Q Consensus 66 ~~~~g~~~~a~~~~~~~ 82 (673)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34566677666666543
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.89 E-value=2.6e+02 Score=23.44 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=11.5
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 005856 103 KKGIVQESVKIFDIMKQLG 121 (673)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~g 121 (673)
|-.+.+.|+-++-+|.+.|
T Consensus 26 RGSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG 44 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC
Confidence 3356666666666666655
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.56 E-value=1.3e+02 Score=23.86 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHcCCCCchhhHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 475 MIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 4455665554432 3344444444 555677777777776666666666666666666664
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.54 E-value=2.9e+02 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 005856 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (673)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (673)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444445556666666666666665443
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.52 E-value=1.4e+02 Score=25.48 Aligned_cols=184 Identities=9% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 005856 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYD--ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN--VMLWGFF 172 (673)
Q Consensus 97 li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 172 (673)
.+...+..|+.+.+..+++.+.+.|..++..... ..+...+..|+. ++++.+.+.|..++..... ..+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH
Q 005856 173 LSLKLETAIRFFEDMKSRGISLDVVTYN--TMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS---YTTMIKGYVAVERA 247 (673)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~ 247 (673)
..|+.+-+..+++.....+..++..... +.+...+..|+ .++++.+.+.|..++... -.+.+...+..|+.
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 005856 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (673)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 290 (673)
+-+.-+++. ...+......-.+.+...+..|+.+-+.-+++
T Consensus 164 ~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 164 SMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.18 E-value=1.3e+02 Score=23.27 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHcCCCCchhhHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 475 MIEDGHSPASSLFRSVMESLFEDG-RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444555554332 3334444444 455666777777666665566665555555555553
No 310
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.13 E-value=2.6e+02 Score=23.32 Aligned_cols=17 Identities=6% Similarity=0.118 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHcC
Q 005856 105 GIVQESVKIFDIMKQLG 121 (673)
Q Consensus 105 ~~~~~a~~~~~~~~~~g 121 (673)
.+.+.|+-++-+|.+.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 55666666666666655
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.54 E-value=2.6e+02 Score=25.45 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 005856 200 NTMINGYNRFKKMDEAEKLFAEM 222 (673)
Q Consensus 200 ~~ll~~~~~~~~~~~a~~~~~~~ 222 (673)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45566666666666666666654
No 312
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.37 E-value=1.5e+02 Score=26.10 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHhh
Q 005856 63 IEILGRVGKLNHARCILLD 81 (673)
Q Consensus 63 ~~~~~~~g~~~~a~~~~~~ 81 (673)
+...++.|+.+.+..+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344566666655555554
No 313
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.29 E-value=1.7e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=14.1
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHh
Q 005856 72 LNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (673)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 103 (673)
.-.|.++++.+.+.++..+..+....+..+..
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 44455555555444444444443333344333
No 314
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.15 E-value=1.6e+02 Score=20.45 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=10.2
Q ss_pred hcCChHHHHHHHHHHHH
Q 005856 598 AAGKTLNAYSILFKIME 614 (673)
Q Consensus 598 ~~g~~~~A~~~~~~~~~ 614 (673)
..|++++|+..|.+.++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666543
No 315
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.09 E-value=3.1e+02 Score=23.76 Aligned_cols=30 Identities=10% Similarity=-0.096 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005856 159 PTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (673)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (673)
++.......+..+.+.|+.+.|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344445555666677777777777765543
No 316
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.94 E-value=2.6e+02 Score=22.86 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005856 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (673)
+....++..+.+.|+-.|...-..++....+.|.+. ...+-.++...|+.++ +....+..+......+.|..+.++-
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHHH
Confidence 344556666666666655555555555555443322 3345555666665432 2222222111111223444444443
Q ss_pred HHc-CCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q 005856 511 VEK-GVKENLDLVAKILEALLMRG-HVEEALGRIDLMM 546 (673)
Q Consensus 511 ~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 546 (673)
... ...++......+...+.+.| .++.+..+++.+.
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 322 11222333445566666666 4555555555543
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.84 E-value=4.8e+02 Score=25.90 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=39.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005856 126 VKSYDALFKLILRRGRYMMAKRYFNKMLSEGI-EPTR--HTY-NVMLWGFFLSLKLETAIRFFEDMKSR 190 (673)
Q Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (673)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+.+.+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44677778888888888888888877631100 0111 122 22345556677888888777777654
No 318
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.39 E-value=1.3e+02 Score=19.67 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHHHHHHc
Q 005856 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRR 139 (673)
Q Consensus 93 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 139 (673)
.++.++..++...-.+++.-.++++.+.| ..+...|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45566666666666777777777777766 46666666666555553
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.66 E-value=2e+02 Score=22.51 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=28.0
Q ss_pred HHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 005856 476 IEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (673)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (673)
.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..+....+..+...|-
T Consensus 14 ~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 14 KETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344544443322 2233333344445555566665555555555555555555555553
No 320
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=25.16 E-value=2.8e+02 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005856 586 LASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (673)
Q Consensus 586 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 617 (673)
....+.|+.-|.+.|++-+|.+++.++...+.
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 44456666777788999999999888887743
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.05 E-value=3.1e+02 Score=23.15 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=17.2
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCcc
Q 005856 94 FEVLIESYG---KKGIVQESVKIFDIMKQLGVER 124 (673)
Q Consensus 94 ~~~li~~~~---~~~~~~~a~~~~~~~~~~g~~~ 124 (673)
+..+|+++. |-.+.+.|+-++-+|.+.|-.|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCH
Confidence 344444443 3356666666666666665333
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=25.03 E-value=1.5e+02 Score=19.98 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 591 KVLDALLAAGKTLNAYSILFKIMEKG 616 (673)
Q Consensus 591 ~l~~~l~~~g~~~~A~~~~~~~~~~~ 616 (673)
.+++.+...|++++|..-+-+++.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 46677777777777777666655543
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.36 E-value=2.6e+02 Score=22.00 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 005856 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (673)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 281 (673)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 334444444444555555555444333444444444444444443
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.69 E-value=1.5e+02 Score=18.97 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=27.3
Q ss_pred chHHHHHHhccCCCCChHHHHHHHhcC-CChHHHHHHHHHHHHc
Q 005856 7 TTRLQNKIRALVPQFDHNLVYNVLHGA-KNSEHALQFFRWVERA 49 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~A~~~~~~~~~~ 49 (673)
..+....|+..=|.++...+-.+|..+ |+.+.|+..+-.+...
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 334445566666777777777777654 4677777776666433
No 325
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.81 E-value=1.9e+02 Score=22.34 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC
Q 005856 440 MGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG 498 (673)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (673)
+.+.|..++.. -..++..+...+ .+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445544432 223344444444 45556666666665554455555544454444433
No 326
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.55 E-value=7.6e+02 Score=26.75 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hHHHHHHHhhcccC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccCHhhHHHHHH
Q 005856 60 LKMIEILGRVGK---LNHARCILLDMPKK--GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFK 134 (673)
Q Consensus 60 ~~l~~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 134 (673)
..++...+..|. .+.|.+.|+..... +.+.++.....+...-.+.|..++-..+++.... ..+...-..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~---~~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ---AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH---CCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhCCCCcCHHHHHHHHHHHHcCCC
Q 005856 135 LILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFED---MKSRGISLDVVTYNTMINGYNRFKK 211 (673)
Q Consensus 135 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~~ 211 (673)
+++...+.....++++.....+.-........+..........+.+.+.+.. .....+......+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred hHHHHHHHHHHHHC
Q 005856 212 MDEAEKLFAEMKEK 225 (673)
Q Consensus 212 ~~~a~~~~~~~~~~ 225 (673)
.++-.+-++...+.
T Consensus 847 t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 847 SEFELQQLEQFKKN 860 (909)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.33 E-value=3.6e+02 Score=22.82 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHhCCCCcCHHH
Q 005856 175 LKLETAIRFFEDMKSRGISLDVVT 198 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~ 198 (673)
.+++.|+-++.+|.+.|-.|....
T Consensus 49 SDpDAALywLaRMl~~GEDp~~Ia 72 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIF 72 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 555556666666655554443333
No 328
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.22 E-value=64 Score=20.67 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005856 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (673)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 241 (673)
++|.+.|.+|++..-.++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666666666433233446676666666
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.99 E-value=1.9e+02 Score=19.59 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005856 468 AKTALDSMIEDGHSPASSLFRSVMESL 494 (673)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (673)
+.++++.+.+.+...+..|....+..+
T Consensus 36 ~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 36 AEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 444444443333333333333333333
No 330
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.82 E-value=3.1e+02 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005856 501 QTASRVMKSMVEKGVKENLDLVAKILEAL 529 (673)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (673)
+.+..++..+.+.|.-.|...-...+...
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~ 75 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASR 75 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 33444444444444443333333333333
No 331
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.55 E-value=82 Score=21.61 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 005856 590 EKVLDALLAAGKTLNAYSILFKIMEK 615 (673)
Q Consensus 590 ~~l~~~l~~~g~~~~A~~~~~~~~~~ 615 (673)
..+++-|+..|+|+.|+.+|+.++++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 46788899999999999999987754
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.37 E-value=3.3e+02 Score=25.17 Aligned_cols=230 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCcHHhHHHHHHHHhc
Q 005856 235 TTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK 314 (673)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (673)
..++.-|...|+.++|.+.++++......+..+........-......+.+..++..+.+.++-+ .......+...+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is-~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS-TAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhh
Q ss_pred cC----ChHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHchhccCCCCCCCCchhhHHHH
Q 005856 315 SG----HLNAAADVLKAMIRL----SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM 386 (673)
Q Consensus 315 ~g----~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 386 (673)
.. |...|...+..+... |..|-...+..+...+...|.... ....+
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~--------------------------fl~~v 147 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAAS--------------------------LLLEI 147 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHH--------------------------HHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHH--------------------------HHHHH
Q ss_pred HHHHHccCCHhHHHHHHHHHHHcC----CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 005856 387 IQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (673)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (673)
+..+.+....+.+..+|....-.- |++.. +..+.+...++.-......-......+-...-..|...+...
T Consensus 148 l~~l~~~~g~~~l~~~~~~s~l~l~~f~P~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~ 222 (339)
T 1ug3_A 148 LGLLCKSMGPKKVGTLWREAGLSWKEFLPEGQD-----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEG 222 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTCCGGGTSCTTCC-----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCHHHHHHHHHHcCCCHHHhCCCchh-----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcC
Q ss_pred CChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhc
Q 005856 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (673)
Q Consensus 463 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (673)
-..++....++........++......+..+.++
T Consensus 223 ~~~~~i~~~i~~~~~~~~~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 223 SSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCY 256 (339)
T ss_dssp CCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCChhhCChHHHHHHHHHHHHH
No 333
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.35 E-value=4.7e+02 Score=23.91 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005856 431 DSAFEIVKIMGRRGVPRDA--DAYICLIESYLRKGEPADAKTALDSMIEDG 479 (673)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 479 (673)
.+..++-..+...++.|.- -+...-+....+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444443333321 234445566667777777777777777654
No 334
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.27 E-value=3.9e+02 Score=22.83 Aligned_cols=110 Identities=7% Similarity=0.053 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 005856 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (673)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (673)
.+.+..+++.+.+.|.-.|...-..++....+.+.+ ....+-.++...|+.++. ....+..+......+.|..+.++
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~~--I~~al~~~~~~~e~e~a~~l~~K 168 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGESD--IDDALTQFTPEVQAELAKKLALK 168 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHHH--HHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHHH--HHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556666677766665555555555555442221 234455566666764432 11111111001112334444444
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHcCC-CHHHHHHHH
Q 005856 510 MVEKGVKEN-LDLVAKILEALLMRG-HVEEALGRI 542 (673)
Q Consensus 510 ~~~~~~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~ 542 (673)
-......++ ......+...+.+.| .++.+..++
T Consensus 169 k~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl 203 (221)
T 3d5l_A 169 LFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIK 203 (221)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 333211112 333455666666666 344443443
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.18 E-value=3.6e+02 Score=22.50 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHhCCCCcCH
Q 005856 175 LKLETAIRFFEDMKSRGISLDV 196 (673)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~ 196 (673)
.+++.|+-++.+|.+.|-.|..
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~ 42 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLY 42 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 5555555555555555544433
No 336
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.14 E-value=3.9e+02 Score=26.43 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHccCChHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 005856 523 AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (673)
Q Consensus 523 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 598 (673)
..++....-...++.|...|.+... ..|+ ++.++......|+.-+|.-++-+++... .|-+.....+...+-+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 3455555555677888888888887 6676 4556666666788888887777777653 3445555556555543
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.61 E-value=1.6e+02 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 005856 500 VQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (673)
Q Consensus 500 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (673)
.-.|.++++.+.+.++..+..+...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3345555555544444444444444444444444
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.54 E-value=2e+02 Score=22.74 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhhHHHHHHHHhccC
Q 005856 440 MGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDG 498 (673)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (673)
+.+.|+.++..= ..++..+...+ .+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 444555544322 22334444444 45556666666666554555555555555555444
No 339
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.48 E-value=5.9e+02 Score=24.66 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=35.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 005856 208 RFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-----ADDALRIFDEMKSFDV 262 (673)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 262 (673)
+.++.+.|...+.+|.+.|..|....-..+..+...-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457888888888888888776665555555555555443 3345556666666663
No 340
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.27 E-value=3e+02 Score=22.44 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=9.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC
Q 005856 138 RRGRYMMAKRYFNKMLSEGIEP 159 (673)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~~~~~ 159 (673)
..|+.+.-.++.+.+++.|..+
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCS
T ss_pred HcCCcchHHHHHHHHHHCCCCC
Confidence 3444444344444444444433
Done!