Query 005857
Match_columns 673
No_of_seqs 236 out of 2051
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 14:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 2E-18 4.4E-23 194.0 2.6 141 6-146 123-267 (1134)
2 PF13639 zf-RING_2: Ring finge 99.0 2.1E-10 4.6E-15 88.0 2.1 44 7-50 1-44 (44)
3 PHA02929 N1R/p28-like protein; 98.7 5.7E-09 1.2E-13 107.3 4.2 53 5-57 173-230 (238)
4 PHA02926 zinc finger-like prot 98.7 7.2E-09 1.6E-13 105.0 3.5 55 4-58 168-234 (242)
5 PF12678 zf-rbx1: RING-H2 zinc 98.6 2.8E-08 6.1E-13 84.8 3.1 47 4-50 17-73 (73)
6 PF13920 zf-C3HC4_3: Zinc fing 98.5 3.8E-08 8.2E-13 77.6 2.6 48 5-55 1-49 (50)
7 PLN03208 E3 ubiquitin-protein 98.5 6.4E-08 1.4E-12 96.7 3.4 52 3-57 15-82 (193)
8 KOG4628 Predicted E3 ubiquitin 98.5 6.9E-08 1.5E-12 103.8 3.0 48 7-54 230-278 (348)
9 KOG0317 Predicted E3 ubiquitin 98.5 6.4E-08 1.4E-12 101.1 2.4 47 6-55 239-285 (293)
10 PF15227 zf-C3HC4_4: zinc fing 98.4 9.9E-08 2.1E-12 73.5 2.3 38 9-49 1-42 (42)
11 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.5E-07 3.3E-12 70.7 2.3 39 9-49 1-39 (39)
12 cd00162 RING RING-finger (Real 98.3 4.1E-07 8.9E-12 67.3 3.7 44 8-53 1-45 (45)
13 PF14634 zf-RING_5: zinc-RING 98.2 5.8E-07 1.3E-11 69.4 2.6 44 8-51 1-44 (44)
14 smart00504 Ubox Modified RING 98.2 1E-06 2.2E-11 71.5 4.1 46 6-54 1-46 (63)
15 KOG1244 Predicted transcriptio 98.2 3.5E-07 7.6E-12 94.9 1.1 53 93-145 278-331 (336)
16 PF00097 zf-C3HC4: Zinc finger 98.2 8E-07 1.7E-11 66.8 2.5 39 9-49 1-41 (41)
17 KOG2177 Predicted E3 ubiquitin 98.2 4.2E-07 9.1E-12 89.2 1.2 46 3-51 10-55 (386)
18 PF12861 zf-Apc11: Anaphase-pr 98.2 9.1E-07 2E-11 78.1 3.1 51 5-55 20-83 (85)
19 KOG0320 Predicted E3 ubiquitin 98.2 6.3E-07 1.4E-11 88.4 2.2 47 7-54 132-178 (187)
20 PF00628 PHD: PHD-finger; Int 98.2 4.2E-07 9.2E-12 71.4 0.1 47 98-144 1-50 (51)
21 KOG0823 Predicted E3 ubiquitin 98.2 9E-07 1.9E-11 90.3 2.4 50 6-58 47-99 (230)
22 KOG1512 PHD Zn-finger protein 98.1 1.3E-06 2.9E-11 91.2 2.5 49 95-144 313-362 (381)
23 TIGR00599 rad18 DNA repair pro 98.1 1.7E-06 3.7E-11 95.0 3.3 49 4-55 24-72 (397)
24 KOG4443 Putative transcription 98.0 3.1E-06 6.7E-11 96.4 3.7 94 6-146 18-119 (694)
25 COG5243 HRD1 HRD ubiquitin lig 98.0 4.5E-06 9.7E-11 90.0 4.5 54 4-57 285-348 (491)
26 smart00184 RING Ring finger. E 98.0 4.6E-06 1E-10 59.5 2.9 38 9-49 1-39 (39)
27 smart00249 PHD PHD zinc finger 97.9 1E-05 2.2E-10 60.8 2.8 45 98-142 1-47 (47)
28 PF13445 zf-RING_UBOX: RING-ty 97.8 9.2E-06 2E-10 63.3 2.3 38 9-47 1-43 (43)
29 KOG0955 PHD finger protein BR1 97.8 8.9E-06 1.9E-10 97.8 3.2 71 95-166 218-290 (1051)
30 KOG4299 PHD Zn-finger protein 97.8 6.2E-06 1.3E-10 93.7 1.2 49 97-145 254-305 (613)
31 COG5194 APC11 Component of SCF 97.8 1.2E-05 2.7E-10 70.2 2.3 50 7-56 21-83 (88)
32 KOG0802 E3 ubiquitin ligase [P 97.7 1.2E-05 2.6E-10 91.6 2.3 48 5-52 290-339 (543)
33 KOG0287 Postreplication repair 97.7 9.8E-06 2.1E-10 86.6 1.5 48 6-56 23-70 (442)
34 KOG1973 Chromatin remodeling p 97.7 1.5E-05 3.2E-10 83.8 2.4 54 90-146 213-269 (274)
35 KOG0804 Cytoplasmic Zn-finger 97.7 1.6E-05 3.5E-10 87.5 1.8 47 4-52 173-220 (493)
36 TIGR00570 cdk7 CDK-activating 97.6 3.4E-05 7.3E-10 82.4 3.4 53 5-57 2-57 (309)
37 COG5574 PEX10 RING-finger-cont 97.6 2.9E-05 6.3E-10 80.8 2.4 48 4-54 213-262 (271)
38 KOG2164 Predicted E3 ubiquitin 97.6 3.4E-05 7.4E-10 86.2 2.7 47 6-55 186-237 (513)
39 KOG1039 Predicted E3 ubiquitin 97.5 4.3E-05 9.3E-10 82.8 2.3 53 5-57 160-224 (344)
40 PF04564 U-box: U-box domain; 97.5 6.8E-05 1.5E-09 63.9 2.5 48 5-55 3-51 (73)
41 COG5432 RAD18 RING-finger-cont 97.4 6.3E-05 1.4E-09 79.2 1.9 48 7-57 26-73 (391)
42 KOG2930 SCF ubiquitin ligase, 97.4 6.5E-05 1.4E-09 68.5 1.4 50 5-54 45-108 (114)
43 COG5141 PHD zinc finger-contai 97.4 6.3E-05 1.4E-09 83.5 1.3 70 96-166 193-264 (669)
44 KOG4323 Polycomb-like PHD Zn-f 97.3 0.00012 2.7E-09 81.6 2.4 133 5-148 82-227 (464)
45 KOG0956 PHD finger protein AF1 97.3 9.8E-05 2.1E-09 84.7 1.6 69 96-165 5-78 (900)
46 KOG1493 Anaphase-promoting com 97.3 4.7E-05 1E-09 66.1 -0.7 51 5-55 19-82 (84)
47 COG5034 TNG2 Chromatin remodel 97.2 0.00014 3E-09 75.5 2.0 46 96-144 221-269 (271)
48 KOG0311 Predicted E3 ubiquitin 97.2 6.2E-05 1.3E-09 81.0 -1.1 51 5-57 42-93 (381)
49 KOG0383 Predicted helicase [Ge 97.1 0.00016 3.4E-09 84.5 1.4 90 27-147 2-96 (696)
50 cd04718 BAH_plant_2 BAH, or Br 97.1 0.00033 7.1E-09 67.9 2.7 28 120-147 1-29 (148)
51 KOG1734 Predicted RING-contain 97.0 0.00022 4.7E-09 74.6 0.6 52 3-54 221-281 (328)
52 smart00744 RINGv The RING-vari 96.9 0.00081 1.8E-08 53.7 2.8 42 8-50 1-49 (49)
53 KOG0954 PHD finger protein [Ge 96.8 0.00035 7.6E-09 80.9 0.9 59 95-156 270-330 (893)
54 KOG1245 Chromatin remodeling c 96.8 0.00027 5.7E-09 88.2 -0.2 53 95-147 1107-1160(1404)
55 KOG0824 Predicted E3 ubiquitin 96.8 0.00056 1.2E-08 72.6 2.1 53 2-57 3-56 (324)
56 PF11793 FANCL_C: FANCL C-term 96.8 0.00041 9E-09 59.1 0.7 49 6-54 2-66 (70)
57 KOG0978 E3 ubiquitin ligase in 96.7 0.00057 1.2E-08 79.6 0.9 47 7-56 644-691 (698)
58 KOG0957 PHD finger protein [Ge 96.7 0.0011 2.3E-08 74.2 3.0 49 96-144 544-597 (707)
59 PF14835 zf-RING_6: zf-RING of 96.6 0.00045 9.8E-09 58.4 -0.4 46 5-54 6-51 (65)
60 KOG4430 Topoisomerase I-bindin 96.2 0.0058 1.3E-07 69.7 5.5 126 5-146 259-385 (553)
61 KOG4172 Predicted E3 ubiquitin 96.1 0.0011 2.3E-08 54.6 -0.8 51 4-57 5-57 (62)
62 KOG4265 Predicted E3 ubiquitin 95.8 0.0059 1.3E-07 66.3 2.9 50 5-57 289-339 (349)
63 KOG4159 Predicted E3 ubiquitin 95.7 0.0057 1.2E-07 67.8 2.2 50 5-57 83-132 (398)
64 PF13831 PHD_2: PHD-finger; PD 95.6 0.0017 3.8E-08 48.9 -1.3 34 109-143 2-36 (36)
65 KOG2660 Locus-specific chromos 95.6 0.0035 7.6E-08 67.4 0.3 51 4-56 13-63 (331)
66 KOG0827 Predicted E3 ubiquitin 95.5 0.0065 1.4E-07 66.6 1.7 44 7-50 5-52 (465)
67 KOG2879 Predicted E3 ubiquitin 95.1 0.017 3.6E-07 61.1 3.4 52 4-57 237-290 (298)
68 KOG4367 Predicted Zn-finger pr 95.1 0.004 8.6E-08 68.9 -1.2 34 4-40 2-35 (699)
69 KOG4445 Uncharacterized conser 95.1 0.0082 1.8E-07 64.0 1.1 52 6-57 115-189 (368)
70 KOG1952 Transcription factor N 95.1 0.013 2.9E-07 69.3 2.8 53 5-57 190-250 (950)
71 KOG1002 Nucleotide excision re 95.0 0.0092 2E-07 67.5 1.2 52 2-56 532-588 (791)
72 KOG1785 Tyrosine kinase negati 94.9 0.013 2.9E-07 64.4 1.9 48 7-57 370-419 (563)
73 KOG1645 RING-finger-containing 94.8 0.017 3.7E-07 63.8 2.6 49 6-54 4-56 (463)
74 KOG0297 TNF receptor-associate 94.8 0.013 2.9E-07 64.7 1.8 54 4-60 19-73 (391)
75 KOG1428 Inhibitor of type V ad 94.6 0.021 4.6E-07 70.3 2.8 54 4-57 3484-3547(3738)
76 PHA03096 p28-like protein; Pro 94.5 0.019 4.1E-07 61.2 2.1 46 7-52 179-232 (284)
77 KOG1814 Predicted E3 ubiquitin 94.5 0.011 2.4E-07 65.3 0.3 46 7-52 185-238 (445)
78 KOG1941 Acetylcholine receptor 93.8 0.028 6E-07 61.9 1.4 53 6-58 365-420 (518)
79 PF14570 zf-RING_4: RING/Ubox 93.6 0.047 1E-06 43.9 2.2 45 9-53 1-47 (48)
80 KOG4692 Predicted E3 ubiquitin 93.2 0.051 1.1E-06 59.3 2.3 53 2-57 418-470 (489)
81 COG5152 Uncharacterized conser 93.0 0.035 7.5E-07 56.4 0.6 46 7-55 197-242 (259)
82 KOG1813 Predicted E3 ubiquitin 92.8 0.036 7.8E-07 59.1 0.5 47 8-57 243-289 (313)
83 COG5175 MOT2 Transcriptional r 92.3 0.076 1.7E-06 57.7 2.1 54 3-56 11-66 (480)
84 PF11789 zf-Nse: Zinc-finger o 91.5 0.074 1.6E-06 43.9 0.8 43 4-48 9-53 (57)
85 KOG0956 PHD finger protein AF1 91.1 0.25 5.3E-06 57.9 4.6 115 28-143 47-178 (900)
86 PHA02862 5L protein; Provision 90.9 0.15 3.3E-06 49.7 2.3 48 6-57 2-56 (156)
87 PF04641 Rtf2: Rtf2 RING-finge 90.5 0.2 4.4E-06 52.5 3.0 52 4-56 111-163 (260)
88 KOG3970 Predicted E3 ubiquitin 89.9 0.22 4.8E-06 51.6 2.7 51 3-54 47-105 (299)
89 KOG0957 PHD finger protein [Ge 89.9 0.25 5.4E-06 56.1 3.3 69 96-165 119-198 (707)
90 COG5222 Uncharacterized conser 89.8 0.16 3.5E-06 54.4 1.7 44 7-52 275-319 (427)
91 KOG4185 Predicted E3 ubiquitin 89.7 0.2 4.4E-06 52.7 2.3 47 7-53 4-54 (296)
92 PF12906 RINGv: RING-variant d 89.0 0.28 6.1E-06 38.9 2.1 40 9-49 1-47 (47)
93 KOG1812 Predicted E3 ubiquitin 88.8 0.12 2.6E-06 57.3 -0.2 50 6-55 146-204 (384)
94 KOG0825 PHD Zn-finger protein 88.5 0.32 6.8E-06 57.8 2.9 56 5-60 95-160 (1134)
95 PHA02825 LAP/PHD finger-like p 88.2 0.4 8.6E-06 47.5 2.9 51 3-57 5-62 (162)
96 KOG3039 Uncharacterized conser 86.6 0.48 1E-05 49.9 2.6 50 5-54 220-270 (303)
97 PF14447 Prok-RING_4: Prokaryo 86.4 0.37 8.1E-06 39.9 1.4 45 6-55 7-51 (55)
98 PF15446 zf-PHD-like: PHD/FYVE 84.8 0.4 8.6E-06 47.9 1.0 48 98-145 1-60 (175)
99 PF07800 DUF1644: Protein of u 84.8 0.44 9.4E-06 47.1 1.3 20 5-27 1-20 (162)
100 KOG2932 E3 ubiquitin ligase in 84.3 0.29 6.3E-06 52.8 -0.2 45 9-57 93-137 (389)
101 KOG3053 Uncharacterized conser 83.0 0.57 1.2E-05 49.5 1.3 54 4-57 18-85 (293)
102 PF05883 Baculo_RING: Baculovi 82.7 0.41 8.8E-06 46.2 0.1 37 6-43 26-69 (134)
103 KOG1940 Zn-finger protein [Gen 81.9 0.82 1.8E-05 48.9 2.0 47 5-51 157-204 (276)
104 KOG4739 Uncharacterized protei 81.7 0.48 1E-05 49.5 0.2 48 7-57 4-51 (233)
105 KOG0826 Predicted E3 ubiquitin 81.4 1.1 2.4E-05 48.9 2.8 46 5-52 299-344 (357)
106 COG5236 Uncharacterized conser 81.3 1.2 2.7E-05 48.8 3.1 52 3-57 58-111 (493)
107 COG5574 PEX10 RING-finger-cont 81.1 0.64 1.4E-05 49.3 0.9 136 6-145 95-260 (271)
108 PF10367 Vps39_2: Vacuolar sor 80.7 0.69 1.5E-05 40.9 0.8 32 5-37 77-108 (109)
109 KOG0298 DEAD box-containing he 80.2 0.59 1.3E-05 58.2 0.3 45 5-51 1152-1196(1394)
110 PF08236 SRI: SRI (Set2 Rpb1 i 77.4 4.4 9.5E-05 36.2 4.9 42 565-608 6-47 (88)
111 PF02891 zf-MIZ: MIZ/SP-RING z 76.9 1.8 3.8E-05 34.9 2.0 44 6-52 2-50 (50)
112 KOG4299 PHD Zn-finger protein 76.8 1.5 3.2E-05 51.3 2.1 52 7-58 254-311 (613)
113 PF14446 Prok-RING_1: Prokaryo 76.7 1.1 2.4E-05 37.0 0.8 33 96-128 5-38 (54)
114 KOG3268 Predicted E3 ubiquitin 75.1 2.3 5E-05 43.1 2.7 30 25-54 188-228 (234)
115 KOG1473 Nucleosome remodeling 73.5 0.65 1.4E-05 57.1 -1.8 126 4-145 342-479 (1414)
116 COG5220 TFB3 Cdk activating ki 73.2 0.93 2E-05 47.6 -0.6 50 4-53 8-63 (314)
117 PF00628 PHD: PHD-finger; Int 73.0 0.42 9.2E-06 37.4 -2.4 43 8-50 1-49 (51)
118 KOG1512 PHD Zn-finger protein 72.6 1.2 2.5E-05 47.9 -0.0 49 97-145 259-317 (381)
119 KOG1473 Nucleosome remodeling 71.6 2.1 4.6E-05 52.9 1.8 47 97-146 345-392 (1414)
120 KOG1001 Helicase-like transcri 71.2 1.8 3.8E-05 51.6 1.0 45 7-55 455-501 (674)
121 PF05290 Baculo_IE-1: Baculovi 70.6 2.9 6.2E-05 40.6 2.1 51 7-57 81-135 (140)
122 KOG1246 DNA-binding protein ju 70.3 3.8 8.2E-05 50.3 3.6 51 95-146 154-205 (904)
123 KOG3002 Zn finger protein [Gen 70.1 2.7 5.8E-05 45.5 2.0 45 5-56 47-93 (299)
124 KOG4362 Transcriptional regula 70.1 1.1 2.4E-05 53.0 -1.0 47 4-53 19-68 (684)
125 COG5183 SSM4 Protein involved 68.0 2.7 5.8E-05 50.5 1.6 52 4-56 10-68 (1175)
126 smart00249 PHD PHD zinc finger 67.9 1.5 3.3E-05 32.4 -0.3 31 8-38 1-31 (47)
127 PF14569 zf-UDP: Zinc-binding 67.1 5.1 0.00011 35.6 2.8 57 2-58 5-66 (80)
128 PF10272 Tmpp129: Putative tra 66.9 5.6 0.00012 44.2 3.7 52 3-56 268-353 (358)
129 PF03854 zf-P11: P-11 zinc fin 66.4 2.6 5.7E-05 34.2 0.8 43 8-54 4-46 (50)
130 PF15446 zf-PHD-like: PHD/FYVE 65.9 2.8 6E-05 42.1 1.0 23 107-129 120-142 (175)
131 PF08746 zf-RING-like: RING-li 64.8 3 6.4E-05 32.6 0.8 41 9-49 1-43 (43)
132 KOG1701 Focal adhesion adaptor 63.9 1.7 3.7E-05 48.8 -0.9 29 97-127 395-429 (468)
133 KOG4628 Predicted E3 ubiquitin 63.4 8.9 0.00019 42.5 4.4 48 97-146 230-277 (348)
134 KOG4443 Putative transcription 62.9 2.5 5.5E-05 49.7 0.1 67 97-163 19-94 (694)
135 KOG0383 Predicted helicase [Ge 62.6 9.2 0.0002 45.9 4.6 50 97-149 178-228 (696)
136 KOG3579 Predicted E3 ubiquitin 60.9 3.7 8E-05 44.2 0.9 45 5-49 267-317 (352)
137 KOG3800 Predicted E3 ubiquitin 59.8 6.2 0.00013 42.6 2.3 47 8-54 2-51 (300)
138 KOG2114 Vacuolar assembly/sort 59.7 4.3 9.4E-05 49.1 1.3 42 7-53 841-882 (933)
139 COG5243 HRD1 HRD ubiquitin lig 58.6 20 0.00043 40.2 5.9 48 96-146 287-344 (491)
140 KOG1244 Predicted transcriptio 56.2 3.4 7.4E-05 44.2 -0.3 50 96-145 224-284 (336)
141 PF10497 zf-4CXXC_R1: Zinc-fin 55.9 5.2 0.00011 37.0 0.9 48 96-144 7-69 (105)
142 KOG0955 PHD finger protein BR1 54.7 7.1 0.00015 48.7 2.0 124 3-128 216-362 (1051)
143 PF13639 zf-RING_2: Ring finge 53.4 0.9 2E-05 34.7 -3.8 43 98-143 2-44 (44)
144 PLN02638 cellulose synthase A 52.7 13 0.00029 46.4 3.9 54 4-57 15-73 (1079)
145 PF07649 C1_3: C1-like domain; 52.4 4.5 9.8E-05 28.9 -0.1 29 98-126 2-30 (30)
146 PLN02189 cellulose synthase 51.6 11 0.00023 47.0 2.8 53 5-57 33-90 (1040)
147 KOG2817 Predicted E3 ubiquitin 51.5 11 0.00025 42.2 2.7 46 7-52 335-383 (394)
148 PF12861 zf-Apc11: Anaphase-pr 51.4 6.2 0.00013 35.5 0.6 47 98-145 34-80 (85)
149 KOG2807 RNA polymerase II tran 50.8 3.3 7.1E-05 45.4 -1.5 45 97-144 331-375 (378)
150 PLN02436 cellulose synthase A 49.9 12 0.00026 46.8 2.8 52 6-57 36-92 (1094)
151 KOG3161 Predicted E3 ubiquitin 49.0 6.9 0.00015 46.3 0.6 41 5-47 10-51 (861)
152 PF11793 FANCL_C: FANCL C-term 46.5 12 0.00026 32.0 1.6 49 97-145 3-64 (70)
153 KOG2034 Vacuolar sorting prote 46.0 9.5 0.00021 46.5 1.2 35 5-40 816-850 (911)
154 PLN02400 cellulose synthase 44.4 18 0.00039 45.3 3.2 53 5-57 35-92 (1085)
155 PF07975 C1_4: TFIIH C1-like d 44.2 11 0.00024 30.9 1.0 42 9-50 2-50 (51)
156 PF14569 zf-UDP: Zinc-binding 44.0 6.5 0.00014 35.0 -0.4 53 95-149 8-64 (80)
157 KOG1815 Predicted E3 ubiquitin 42.2 12 0.00027 42.2 1.4 35 6-42 70-104 (444)
158 PRK14559 putative protein seri 41.9 21 0.00046 42.6 3.2 50 98-148 3-53 (645)
159 PF12678 zf-rbx1: RING-H2 zinc 41.8 7.5 0.00016 33.3 -0.3 26 115-143 48-73 (73)
160 TIGR00622 ssl1 transcription f 41.3 23 0.00049 33.5 2.7 45 6-50 55-110 (112)
161 PF14446 Prok-RING_1: Prokaryo 39.7 23 0.00051 29.4 2.2 35 4-38 3-38 (54)
162 KOG1844 PHD Zn-finger proteins 38.6 26 0.00057 39.8 3.2 54 95-149 85-139 (508)
163 KOG1609 Protein involved in mR 38.0 12 0.00026 39.1 0.4 52 6-57 78-137 (323)
164 PLN02915 cellulose synthase A 35.4 27 0.00059 43.7 2.8 54 4-57 13-71 (1044)
165 KOG1245 Chromatin remodeling c 34.3 13 0.00029 47.9 -0.0 49 5-53 1107-1159(1404)
166 PF13901 DUF4206: Domain of un 33.8 29 0.00063 35.4 2.3 41 97-145 153-198 (202)
167 PLN02400 cellulose synthase 33.5 34 0.00073 43.1 3.2 51 95-147 35-89 (1085)
168 PF10497 zf-4CXXC_R1: Zinc-fin 33.2 45 0.00098 30.9 3.3 24 28-51 37-69 (105)
169 PF13922 PHD_3: PHD domain of 32.5 9.7 0.00021 32.9 -1.1 27 110-143 42-68 (69)
170 PLN03208 E3 ubiquitin-protein 32.0 44 0.00095 34.4 3.2 51 95-148 17-80 (193)
171 KOG3799 Rab3 effector RIM1 and 31.9 6.9 0.00015 38.1 -2.3 49 4-58 63-122 (169)
172 COG5540 RING-finger-containing 31.6 13 0.00027 40.7 -0.7 47 97-145 324-370 (374)
173 KOG2068 MOT2 transcription fac 31.5 30 0.00064 38.2 2.1 49 7-55 250-299 (327)
174 PLN02195 cellulose synthase A 31.0 40 0.00088 42.0 3.3 49 6-54 6-59 (977)
175 KOG0269 WD40 repeat-containing 30.6 36 0.00078 41.3 2.7 46 6-52 779-826 (839)
176 PLN02189 cellulose synthase 30.5 35 0.00077 42.7 2.7 51 95-147 33-87 (1040)
177 KOG0317 Predicted E3 ubiquitin 28.5 20 0.00043 38.9 0.1 48 93-146 236-283 (293)
178 PLN02638 cellulose synthase A 28.5 36 0.00078 42.8 2.3 51 95-147 16-70 (1079)
179 PLN02436 cellulose synthase A 28.1 42 0.00092 42.2 2.8 51 95-147 35-89 (1094)
180 PF07191 zinc-ribbons_6: zinc- 27.9 5.9 0.00013 34.5 -3.2 44 6-57 1-44 (70)
181 PF00301 Rubredoxin: Rubredoxi 27.4 44 0.00096 26.9 1.9 13 135-147 33-45 (47)
182 PLN02195 cellulose synthase A 27.3 40 0.00087 42.0 2.4 49 97-147 7-59 (977)
183 KOG1815 Predicted E3 ubiquitin 27.1 26 0.00055 39.7 0.7 29 22-51 179-207 (444)
184 PF14692 DUF4462: Domain of un 27.0 20 0.00044 26.2 -0.1 16 324-339 5-21 (28)
185 KOG0827 Predicted E3 ubiquitin 26.4 8.7 0.00019 43.1 -3.0 50 8-57 198-248 (465)
186 PF13832 zf-HC5HC2H_2: PHD-zin 26.0 29 0.00064 31.3 0.8 31 96-128 55-87 (110)
187 PF09986 DUF2225: Uncharacteri 25.7 36 0.00079 35.0 1.5 15 43-57 5-19 (214)
188 smart00064 FYVE Protein presen 25.5 55 0.0012 27.1 2.2 36 4-39 8-44 (68)
189 PF01363 FYVE: FYVE zinc finge 25.4 24 0.00053 29.3 0.1 36 2-37 5-41 (69)
190 KOG4718 Non-SMC (structural ma 24.2 42 0.0009 35.2 1.5 47 7-55 182-228 (235)
191 cd00730 rubredoxin Rubredoxin; 24.0 62 0.0013 26.4 2.2 15 132-147 31-45 (50)
192 PLN02915 cellulose synthase A 24.0 52 0.0011 41.4 2.5 50 96-147 15-68 (1044)
193 PF14445 Prok-RING_2: Prokaryo 23.9 12 0.00025 31.0 -2.0 42 96-143 7-48 (57)
194 KOG1632 Uncharacterized PHD Zn 23.7 44 0.00096 37.0 1.7 39 110-148 74-116 (345)
195 KOG4185 Predicted E3 ubiquitin 22.3 23 0.00049 37.4 -0.8 47 6-52 207-265 (296)
196 KOG0309 Conserved WD40 repeat- 22.3 57 0.0012 39.7 2.3 27 22-48 1043-1069(1081)
197 smart00647 IBR In Between Ring 21.8 22 0.00047 28.5 -0.9 20 22-41 41-60 (64)
198 PF06844 DUF1244: Protein of u 21.7 52 0.0011 28.6 1.4 13 30-42 11-23 (68)
199 TIGR00043 metalloprotein, YbeY 21.5 77 0.0017 29.5 2.6 30 588-617 64-93 (110)
200 PF05502 Dynactin_p62: Dynacti 21.3 45 0.00097 38.5 1.2 32 110-145 4-35 (483)
201 KOG2231 Predicted E3 ubiquitin 20.5 52 0.0011 39.6 1.5 48 8-58 2-56 (669)
202 KOG4218 Nuclear hormone recept 20.3 35 0.00077 38.0 0.1 48 4-51 13-75 (475)
203 PHA02929 N1R/p28-like protein; 20.1 41 0.00089 35.5 0.6 47 96-145 174-225 (238)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.71 E-value=2e-18 Score=194.04 Aligned_cols=141 Identities=24% Similarity=0.619 Sum_probs=104.6
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccccCCCCCCCCCcceeeeecccccccccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIRRPPKDGVFPRERFVVVPKRDQIYGGFGI 85 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~~~~vdG~f~nErLv~VpeRdQvyepseE 85 (673)
...|+||+..+.+..+.....|.|+||..||..|.+....||+||.+|..+......+.-...+.+.+.+..+..+..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~~d 202 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKGGD 202 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhccc
Confidence 35699999998877777778899999999999999999999999999998874433332122223333333332222111
Q ss_pred cc--cCCCCcccccccccccCCCCccccccccccccc-cccccccCC-CCCCCCCccCcCCCCcc
Q 005857 86 AS--SRTADPYAYVRCNVCQGTTYESLLLLCDLCDTA-SHTYCVGMG-NAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 86 Es--~~eeDp~e~~~CsVC~~~d~ee~LL~CD~Cd~a-fH~~CL~pp-~~VP~gdW~Cp~Cr~~~ 146 (673)
+. .......+...|.+|..++.+++||+||.|+.+ ||+|||+|+ .++|.+.|||+.|....
T Consensus 203 ~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 203 EKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred cccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 11 111122345789999999999999999999997 999999997 68999999999997654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.97 E-value=2.1e-10 Score=87.97 Aligned_cols=44 Identities=34% Similarity=0.773 Sum_probs=38.1
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCK 50 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCR 50 (673)
++|+||++.+........++|+|.||..||.+|++....||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999997666677778999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.75 E-value=5.7e-09 Score=107.34 Aligned_cols=53 Identities=32% Similarity=0.856 Sum_probs=45.2
Q ss_pred CcccccccccccccCC-----CcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKSI-----RGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~-----~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
++.+|+||++.+.+.+ .+++.+|+|.||..||.+|.+....||+||..|..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence 4679999999875432 3577889999999999999999999999999988766
No 4
>PHA02926 zinc finger-like protein; Provisional
Probab=98.71 E-value=7.2e-09 Score=104.99 Aligned_cols=55 Identities=36% Similarity=0.918 Sum_probs=44.7
Q ss_pred CCccccccccccccc------CCCcEeccCCCccCHhHHHHHHHhc------CCCCCCccccccccC
Q 005857 4 LHSRSCGICLMDEGK------SIRGQIDSCDHYFCFVCIMEWAKIE------SKCPMCKRRFTSIRR 58 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~------~~~~~Ld~CgH~FC~~CI~eWsk~k------~sCPlCRkeFt~I~~ 58 (673)
.++.+|+||||..-+ ...+++++|+|.||+.||..|.+.. ..||+||..|..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 356899999998622 2348899999999999999999752 469999999988773
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.59 E-value=2.8e-08 Score=84.82 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=36.9
Q ss_pred CCccccccccccccc----------CCCcEeccCCCccCHhHHHHHHHhcCCCCCCc
Q 005857 4 LHSRSCGICLMDEGK----------SIRGQIDSCDHYFCFVCIMEWAKIESKCPMCK 50 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~----------~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCR 50 (673)
..++.|+||++.|.+ .....+..|+|.||+.||..|++....||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345679999999932 12335567999999999999999999999997
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.55 E-value=3.8e-08 Score=77.58 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=39.9
Q ss_pred CcccccccccccccCCCcEeccCCCc-cCHhHHHHHHHhcCCCCCCcccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHY-FCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~-FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
|+..|.||++...+ ..+.+|+|. ||..|+..|.+....||+||+++..
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 57899999997643 678899999 9999999999988999999998764
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.50 E-value=6.4e-08 Score=96.71 Aligned_cols=52 Identities=31% Similarity=0.777 Sum_probs=41.6
Q ss_pred CCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHh----------------cCCCCCCcccccccc
Q 005857 3 GLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI----------------ESKCPMCKRRFTSIR 57 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~----------------k~sCPlCRkeFt~I~ 57 (673)
..++.+|+||++.+.+ +++..|+|.||..||.+|... ...||+||..+....
T Consensus 15 ~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 15 SGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 3456899999998854 677789999999999999742 247999999876543
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.9e-08 Score=103.83 Aligned_cols=48 Identities=38% Similarity=0.787 Sum_probs=42.3
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhc-CCCCCCccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIE-SKCPMCKRRFT 54 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k-~sCPlCRkeFt 54 (673)
+.|.||||.|..++...+++|.|.||..||.+|+... ..||+||....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 4999999999988888999999999999999999654 56999998543
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=6.4e-08 Score=101.15 Aligned_cols=47 Identities=34% Similarity=1.123 Sum_probs=41.1
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
...|.||||...+ +...+|||.||..||.+|...+..||+||..|+.
T Consensus 239 ~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 239 TRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCceEEEecCCCC---CCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 4689999996643 6778899999999999999999999999998764
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.44 E-value=9.9e-08 Score=73.53 Aligned_cols=38 Identities=34% Similarity=0.647 Sum_probs=28.9
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHHhc----CCCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIE----SKCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k----~sCPlC 49 (673)
|+||++.|.+ ++.+.|+|.||+.||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999955 7888999999999999988552 479987
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.40 E-value=1.5e-07 Score=70.71 Aligned_cols=39 Identities=36% Similarity=0.905 Sum_probs=32.4
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlC 49 (673)
|+||++.+.+ ..++++|+|.||+.||.+|.+....||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998844 23688999999999999999888899988
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.35 E-value=4.1e-07 Score=67.28 Aligned_cols=44 Identities=34% Similarity=0.858 Sum_probs=36.3
Q ss_pred cccccccccccCCCcEeccCCCccCHhHHHHHHHh-cCCCCCCcccc
Q 005857 8 SCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRF 53 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeF 53 (673)
.|+||++.+. ....+.+|+|.||..|+..|.+. ...||.|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999882 33556679999999999999987 67899998753
No 13
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.25 E-value=5.8e-07 Score=69.41 Aligned_cols=44 Identities=32% Similarity=0.867 Sum_probs=38.2
Q ss_pred cccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcc
Q 005857 8 SCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKR 51 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRk 51 (673)
.|+||++.+.+...+.+++|+|+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567899999999999999998855678999985
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.24 E-value=1e-06 Score=71.46 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
+..|+||++.+.+ +++.+|||.||..||.+|.+....||.|++.+.
T Consensus 1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3689999999855 677899999999999999988889999998764
No 15
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.22 E-value=3.5e-07 Score=94.93 Aligned_cols=53 Identities=34% Similarity=0.774 Sum_probs=47.3
Q ss_pred cccccccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCc
Q 005857 93 PYAYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 93 p~e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~ 145 (673)
..+...|.+|+-.++.+.+||||.|++.||+|||.|+ .+.|+|.|-|.-|...
T Consensus 278 cieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 278 CIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred eeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 3456789999999988999999999999999999998 7889999999999753
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.21 E-value=8e-07 Score=66.81 Aligned_cols=39 Identities=36% Similarity=0.891 Sum_probs=32.6
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHH--hcCCCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK--IESKCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk--~k~sCPlC 49 (673)
|+||++.+.+. ..+++|+|.||..||.+|.+ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999988441 24889999999999999998 35679988
No 17
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.2e-07 Score=89.22 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=39.1
Q ss_pred CCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcc
Q 005857 3 GLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKR 51 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRk 51 (673)
..+...|+||++.|.. +.+++|+|.||..||..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc---CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3467899999999965 388899999999999987766678999994
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.20 E-value=9.1e-07 Score=78.10 Aligned_cols=51 Identities=29% Similarity=0.766 Sum_probs=40.1
Q ss_pred CcccccccccccccC----------CCcEeccCCCccCHhHHHHHHHh---cCCCCCCcccccc
Q 005857 5 HSRSCGICLMDEGKS----------IRGQIDSCDHYFCFVCIMEWAKI---ESKCPMCKRRFTS 55 (673)
Q Consensus 5 Ed~~CpICLE~f~~~----------~~~~Ld~CgH~FC~~CI~eWsk~---k~sCPlCRkeFt~ 55 (673)
+++.|+||+..|+.. -..+.-.|+|.||..||.+|++. +..||+||+++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 478999999999521 12344569999999999999975 4689999998764
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.3e-07 Score=88.36 Aligned_cols=47 Identities=34% Similarity=0.742 Sum_probs=39.8
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
..|||||+.+.. ..+.-..|||.||..||+.-.+....||+|++.++
T Consensus 132 ~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 132 YKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cCCCceecchhh-ccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 579999999843 44455679999999999999999999999998644
No 20
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.15 E-value=4.2e-07 Score=71.41 Aligned_cols=47 Identities=34% Similarity=0.928 Sum_probs=39.9
Q ss_pred ccccccCCCCccccccccccccccccccccCC---CCCCCCCccCcCCCC
Q 005857 98 RCNVCQGTTYESLLLLCDLCDTASHTYCVGMG---NAVPEGDWFCHDCTV 144 (673)
Q Consensus 98 ~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp---~~VP~gdW~Cp~Cr~ 144 (673)
+|.+|+..+..+.++.|+.|+.+||..|++++ ..++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899998888899999999999999999987 244456899999863
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9e-07 Score=90.31 Aligned_cols=50 Identities=28% Similarity=0.762 Sum_probs=41.0
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHh---cCCCCCCccccccccC
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI---ESKCPMCKRRFTSIRR 58 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~---k~sCPlCRkeFt~I~~ 58 (673)
...|-||||.-++ +++..|+|.||.-||-+|+.. ...||+||..+..-..
T Consensus 47 ~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 47 FFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred ceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 4689999997644 677789999999999999976 3579999988765543
No 22
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.10 E-value=1.3e-06 Score=91.23 Aligned_cols=49 Identities=41% Similarity=1.042 Sum_probs=42.7
Q ss_pred cccccccccCCCCccccccccccccccccccccCCCCCCCCCccCcC-CCC
Q 005857 95 AYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHD-CTV 144 (673)
Q Consensus 95 e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~-Cr~ 144 (673)
+...|.+|+....++.++|||.|++.||++|+++. .+|.|.|.|.. |..
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~-~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQ-DLPRGEWICDMRCRE 362 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCccccccc-cccCccchhhhHHHH
Confidence 34678899998888999999999999999999987 89999999983 543
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=1.7e-06 Score=94.99 Aligned_cols=49 Identities=31% Similarity=0.597 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
.....|+||++.|.. +++.+|+|.||..||..|+.....||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345799999999854 5677999999999999999887789999998764
No 24
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.02 E-value=3.1e-06 Score=96.36 Aligned_cols=94 Identities=30% Similarity=0.734 Sum_probs=73.1
Q ss_pred cccccccccccccCC--CcEeccCCCccCHhHHHHHHHh-----cCCCCCCccccccccCCCCCCCCCcceeeeeccccc
Q 005857 6 SRSCGICLMDEGKSI--RGQIDSCDHYFCFVCIMEWAKI-----ESKCPMCKRRFTSIRRPPKDGVFPRERFVVVPKRDQ 78 (673)
Q Consensus 6 d~~CpICLE~f~~~~--~~~Ld~CgH~FC~~CI~eWsk~-----k~sCPlCRkeFt~I~~~~vdG~f~nErLv~VpeRdQ 78 (673)
.++|+||-....... ...+..|+..||-.|...|... -|.||-|+
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr---------------------------- 69 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR---------------------------- 69 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce----------------------------
Confidence 356778776553222 2345558899999999988744 36788874
Q ss_pred ccccccccccCCCCcccccccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCcc
Q 005857 79 IYGGFGIASSRTADPYAYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 79 vyepseEEs~~eeDp~e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~ 146 (673)
.|..|+..+++..+++|+.|+..||.||+.|+ ..||.|.|+|+.|...+
T Consensus 70 -------------------vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 70 -------------------VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred -------------------eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhh
Confidence 36678888888899999999999999999998 78999999999986554
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.5e-06 Score=89.98 Aligned_cols=54 Identities=22% Similarity=0.641 Sum_probs=43.8
Q ss_pred CCccccccccccc-ccC---------CCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDE-GKS---------IRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f-~~~---------~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
.++..|.||+|.+ ..+ ..++-++|||.||+.|++.|.+...+||.||.++..-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 4578999999994 321 33567889999999999999999999999998855444
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.00 E-value=4.6e-06 Score=59.49 Aligned_cols=38 Identities=39% Similarity=0.990 Sum_probs=31.8
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHH-hcCCCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK-IESKCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk-~k~sCPlC 49 (673)
|+||++.. ....+++|+|.||..|+..|.+ ....||.|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999974 2367778999999999999987 55679987
No 27
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.84 E-value=9.2e-06 Score=63.28 Aligned_cols=38 Identities=32% Similarity=0.676 Sum_probs=23.0
Q ss_pred ccccccccc-cCCCcEeccCCCccCHhHHHHHHHh----cCCCC
Q 005857 9 CGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKI----ESKCP 47 (673)
Q Consensus 9 CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~----k~sCP 47 (673)
|+||+| |. +.+.+++++|||.||.+||.++++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 64 4566888899999999999999874 34566
No 29
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.84 E-value=8.9e-06 Score=97.84 Aligned_cols=71 Identities=23% Similarity=0.600 Sum_probs=60.1
Q ss_pred cccccccccCCCCc--cccccccccccccccccccCCCCCCCCCccCcCCCCccccCCCccccCCccccccCCc
Q 005857 95 AYVRCNVCQGTTYE--SLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRDEHDNAEIETDTETVFGDGS 166 (673)
Q Consensus 95 e~~~CsVC~~~d~e--e~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~e~~~~~~e~~~~~~F~~~s 166 (673)
....|.||.+++.. +.+++||.|+.++|++|++.+ -+|+|.|+|..|........++...+.+.-.|+++.
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~-~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~ 290 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP-FIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTD 290 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCC-CCCCCcEeehhhccCcCcccceEeccCCCCcceecc
Confidence 44689999988654 889999999999999999966 699999999999998877778888877766687664
No 30
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.81 E-value=6.2e-06 Score=93.66 Aligned_cols=49 Identities=29% Similarity=0.821 Sum_probs=43.0
Q ss_pred cccccccCCCCccccccccccccccccccccCC---CCCCCCCccCcCCCCc
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG---NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp---~~VP~gdW~Cp~Cr~~ 145 (673)
.+|..|...+.-..+++||+|++.||++||+|| +.+|.|.|||+.|...
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 389999988654556999999999999999998 6799999999999764
No 31
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.78 E-value=1.2e-05 Score=70.17 Aligned_cols=50 Identities=22% Similarity=0.504 Sum_probs=39.1
Q ss_pred ccccccccccccC-------------CCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccc
Q 005857 7 RSCGICLMDEGKS-------------IRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSI 56 (673)
Q Consensus 7 ~~CpICLE~f~~~-------------~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I 56 (673)
+.|+||+..|.+. -....-.|.|.||+.||.+|+..+..||++++.|...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 6789998877321 1122344999999999999999999999999988754
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=91.59 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=40.9
Q ss_pred CcccccccccccccCC--CcEeccCCCccCHhHHHHHHHhcCCCCCCccc
Q 005857 5 HSRSCGICLMDEGKSI--RGQIDSCDHYFCFVCIMEWAKIESKCPMCKRR 52 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~--~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRke 52 (673)
.+..|.||+|.+.... .++.++|+|.||..|++.|.+..+.||.||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 4789999999985421 25677899999999999999999999999983
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.75 E-value=9.8e-06 Score=86.58 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=42.2
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSI 56 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I 56 (673)
.+.|.||.+.|. ++++.+|+|+||--||+.++.....||.|..+|+.-
T Consensus 23 lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 368999999883 478889999999999999999999999999887643
No 34
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.72 E-value=1.5e-05 Score=83.81 Aligned_cols=54 Identities=30% Similarity=0.759 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCCccccccccc--cc-cccccccccCCCCCCCCCccCcCCCCcc
Q 005857 90 TADPYAYVRCNVCQGTTYESLLLLCDL--CD-TASHTYCVGMGNAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 90 eeDp~e~~~CsVC~~~d~ee~LL~CD~--Cd-~afH~~CL~pp~~VP~gdW~Cp~Cr~~~ 146 (673)
..++.+..+| +|. ....+.|+-||. |+ .|||+.|+++. ..|.|.|||+.|....
T Consensus 213 ~~d~~e~~yC-~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 213 AVDPDEPTYC-ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCPRCKAEN 269 (274)
T ss_pred ccCCCCCEEE-Eec-ccccccccccCCCCCCcceEEEeccccc-cCCCCcccchhhhhhh
Confidence 3444455677 566 334467999996 99 79999999987 7889999999998643
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.67 E-value=1.6e-05 Score=87.52 Aligned_cols=47 Identities=32% Similarity=0.764 Sum_probs=36.9
Q ss_pred CCcccccccccccccCCCc-EeccCCCccCHhHHHHHHHhcCCCCCCccc
Q 005857 4 LHSRSCGICLMDEGKSIRG-QIDSCDHYFCFVCIMEWAKIESKCPMCKRR 52 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~-~Ld~CgH~FC~~CI~eWsk~k~sCPlCRke 52 (673)
.|-.+||||||.++...-+ +...|.|.||-.|+++|.. .+||+||..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~ 220 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYC 220 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhh
Confidence 4668999999999654323 2334999999999999976 679999854
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=3.4e-05 Score=82.35 Aligned_cols=53 Identities=19% Similarity=0.565 Sum_probs=38.9
Q ss_pred Cccccccccccc--ccCCCcEeccCCCccCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDE--GKSIRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f--~~~~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
++..||||+... ....+..+..|+|.||..||.. |......||.|++.+....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 467999999953 2222334447999999999988 5566678999998766543
No 37
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.9e-05 Score=80.81 Aligned_cols=48 Identities=29% Similarity=0.832 Sum_probs=39.4
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHH-HHHhcC-CCCCCccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIME-WAKIES-KCPMCKRRFT 54 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~e-Wsk~k~-sCPlCRkeFt 54 (673)
+.+..|.||++.. ..+...+|+|.||..||.. |.+.+. .||+||+..+
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 3467899999965 4477888999999999998 987765 4999998754
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.4e-05 Score=86.23 Aligned_cols=47 Identities=30% Similarity=0.725 Sum_probs=36.7
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHh-----cCCCCCCcccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-----ESKCPMCKRRFTS 55 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-----k~sCPlCRkeFt~ 55 (673)
+..|||||+.. ..+....|||+||+.||-.++.. -..||+|+..++.
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999955 44666679999999999875533 2579999987665
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.3e-05 Score=82.78 Aligned_cols=53 Identities=28% Similarity=0.862 Sum_probs=43.5
Q ss_pred CcccccccccccccCC-----CcEeccCCCccCHhHHHHHHHh-------cCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKSI-----RGQIDSCDHYFCFVCIMEWAKI-------ESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~-----~~~Ld~CgH~FC~~CI~eWsk~-------k~sCPlCRkeFt~I~ 57 (673)
.+.+|+||++.+.+.. .+++.+|.|.||..||..|... ...||.||.....+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 4689999999986655 6777889999999999999833 367999998766655
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.47 E-value=6.8e-05 Score=63.88 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=37.8
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHh-cCCCCCCcccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRFTS 55 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeFt~ 55 (673)
+.+.|+|+.+.+.+ +++.+|||+|+..||..|.+. ...||.|++.+..
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46899999999966 788899999999999999988 7899999887664
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.41 E-value=6.3e-05 Score=79.22 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=41.9
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
+.|-||-+.|. ++.+.+|+|+||.-||+..+.....||+||.++....
T Consensus 26 lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 26 LRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred HHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 68999999873 3778899999999999999999999999999876554
No 42
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=6.5e-05 Score=68.54 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=37.7
Q ss_pred Cccccccccccccc------CC--------CcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 5 HSRSCGICLMDEGK------SI--------RGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 5 Ed~~CpICLE~f~~------~~--------~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
+-+.|+||+..+-+ .+ ...--.|+|.||+.||..|++..+.||+|.++..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 45789999887611 00 1122349999999999999999999999988754
No 43
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.36 E-value=6.3e-05 Score=83.55 Aligned_cols=70 Identities=24% Similarity=0.578 Sum_probs=54.3
Q ss_pred ccccccccCCCC--ccccccccccccccccccccCCCCCCCCCccCcCCCCccccCCCccccCCccccccCCc
Q 005857 96 YVRCNVCQGTTY--ESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRDEHDNAEIETDTETVFGDGS 166 (673)
Q Consensus 96 ~~~CsVC~~~d~--ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~e~~~~~~e~~~~~~F~~~s 166 (673)
...|.+|...+. .+.+++||+|+.+.|..|.+++ .+|+|.|+|..|.-...+-.-+-..+..+..|.+++
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~-f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~ 264 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ-FLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTS 264 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccce-ecCcchhhhhhhcccccceeEEEeccCCCCceeecc
Confidence 467999987754 4679999999999999999998 899999999999876554433444454444577664
No 44
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.28 E-value=0.00012 Score=81.59 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=75.7
Q ss_pred CcccccccccccccC--CCcEeccCCCccCHhHHHHHHH--hcCCCCCCccccccccCC-CCCCCCCcceeeeecccccc
Q 005857 5 HSRSCGICLMDEGKS--IRGQIDSCDHYFCFVCIMEWAK--IESKCPMCKRRFTSIRRP-PKDGVFPRERFVVVPKRDQI 79 (673)
Q Consensus 5 Ed~~CpICLE~f~~~--~~~~Ld~CgH~FC~~CI~eWsk--~k~sCPlCRkeFt~I~~~-~vdG~f~nErLv~VpeRdQv 79 (673)
++..|.||....... .+.....|++.++..|-.+-.- ....+--|..+.....-. .+.|.+.. -.+
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~---------~~l 152 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLAR---------PSL 152 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccccccccccc---------ccc
Confidence 457789998866432 2344667888888888544321 123344476654443311 11222211 111
Q ss_pred cccccccccCC-CCcccccccccccCC--CCccccccccccccccccccccCC-----CCCCCCCccCcCCCCcccc
Q 005857 80 YGGFGIASSRT-ADPYAYVRCNVCQGT--TYESLLLLCDLCDTASHTYCVGMG-----NAVPEGDWFCHDCTVLRDE 148 (673)
Q Consensus 80 yepseEEs~~e-eDp~e~~~CsVC~~~--d~ee~LL~CD~Cd~afH~~CL~pp-----~~VP~gdW~Cp~Cr~~~~e 148 (673)
+.+.. ...+ ........|.||..+ +..+.||+|+.|..+||..|..|+ ..=+...|||..|....+.
T Consensus 153 ~y~~~--~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~ 227 (464)
T KOG4323|consen 153 PYPEA--SLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKK 227 (464)
T ss_pred cCccc--ccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhh
Confidence 11111 1110 111122348888654 345689999999999999999986 1235678999999876544
No 45
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.27 E-value=9.8e-05 Score=84.66 Aligned_cols=69 Identities=30% Similarity=0.669 Sum_probs=52.2
Q ss_pred ccccccccCCC--Ccccccccc--ccccccccccccCCCCCCCCCccCcCCCC-ccccCCCccccCCccccccCC
Q 005857 96 YVRCNVCQGTT--YESLLLLCD--LCDTASHTYCVGMGNAVPEGDWFCHDCTV-LRDEHDNAEIETDTETVFGDG 165 (673)
Q Consensus 96 ~~~CsVC~~~d--~ee~LL~CD--~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~-~~~e~~~~~~e~~~~~~F~~~ 165 (673)
..-|.||-+.. .++-++||| .|..+.|..|+++- +||.|.|||..|-. .+....++++.+.++..++.+
T Consensus 5 VGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIv-qVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkT 78 (900)
T KOG0956|consen 5 VGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIV-QVPTGPWFCRKCESQERAARVRCELCPHKDGALKKT 78 (900)
T ss_pred ccceeeecCcCCCccCceeeecCCCceeeeehhcceeE-ecCCCchhhhhhhhhhhhccceeecccCcccceecc
Confidence 45688997654 345699998 78999999999998 89999999999954 334457777776555444444
No 46
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=4.7e-05 Score=66.09 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=38.2
Q ss_pred CcccccccccccccC----------CCcEeccCCCccCHhHHHHHHHh---cCCCCCCcccccc
Q 005857 5 HSRSCGICLMDEGKS----------IRGQIDSCDHYFCFVCIMEWAKI---ESKCPMCKRRFTS 55 (673)
Q Consensus 5 Ed~~CpICLE~f~~~----------~~~~Ld~CgH~FC~~CI~eWsk~---k~sCPlCRkeFt~ 55 (673)
.+.+|+||+..|+.. -..++--|.|.||..||.+|... ...||+||+.|..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 356999999998421 11223348999999999999865 3579999998864
No 47
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00014 Score=75.49 Aligned_cols=46 Identities=35% Similarity=0.969 Sum_probs=38.0
Q ss_pred ccccccccCCCCcccccccc--cccc-ccccccccCCCCCCCCCccCcCCCC
Q 005857 96 YVRCNVCQGTTYESLLLLCD--LCDT-ASHTYCVGMGNAVPEGDWFCHDCTV 144 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~LL~CD--~Cd~-afH~~CL~pp~~VP~gdW~Cp~Cr~ 144 (673)
..+| .|...-. +.|+-|| .|.+ |||+.|+++. ..|.|.|||+.|..
T Consensus 221 ~lYC-fCqqvSy-GqMVaCDn~nCkrEWFH~~CVGLk-~pPKG~WYC~eCk~ 269 (271)
T COG5034 221 ELYC-FCQQVSY-GQMVACDNANCKREWFHLECVGLK-EPPKGKWYCPECKK 269 (271)
T ss_pred eeEE-Eeccccc-ccceecCCCCCchhheeccccccC-CCCCCcEeCHHhHh
Confidence 3567 6876533 4799998 7887 9999999987 78999999999975
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=6.2e-05 Score=81.04 Aligned_cols=51 Identities=33% Similarity=0.699 Sum_probs=39.6
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHH-hcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK-IESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk-~k~sCPlCRkeFt~I~ 57 (673)
.++.|+|||+.+... .....|.|.||+.||..-.+ ..+.||.||+....-.
T Consensus 42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 357899999998532 45556999999999987664 4689999999755443
No 49
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.14 E-value=0.00016 Score=84.48 Aligned_cols=90 Identities=27% Similarity=0.631 Sum_probs=61.9
Q ss_pred CCCccCHhHHHHHHHh----cCCCCCCccccccccCCCCCCCCCcceeeeecccccccccccccccCCCCcccccccccc
Q 005857 27 CDHYFCFVCIMEWAKI----ESKCPMCKRRFTSIRRPPKDGVFPRERFVVVPKRDQIYGGFGIASSRTADPYAYVRCNVC 102 (673)
Q Consensus 27 CgH~FC~~CI~eWsk~----k~sCPlCRkeFt~I~~~~vdG~f~nErLv~VpeRdQvyepseEEs~~eeDp~e~~~CsVC 102 (673)
|...++..|+.+-.+. ...||.|......+... + ...+..+...|.+|
T Consensus 2 ~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~-----------------~-----------~~~~~~~~e~c~ic 53 (696)
T KOG0383|consen 2 CPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAK-----------------D-----------DDWDDAEQEACRIC 53 (696)
T ss_pred CCcccCcCCCCcccccCCcCCccCcchhhcccccccc-----------------c-----------CCcchhhhhhhhhh
Confidence 6667778887765533 45677775543332210 0 00112233579999
Q ss_pred cCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCccc
Q 005857 103 QGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 103 ~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~~ 147 (673)
.+.+ .+++|+.|..+||.+|++++ ..+|.++|.|+.|..+..
T Consensus 54 ~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 54 ADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred cCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 9875 67899999999999999987 678888899999966554
No 50
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.07 E-value=0.00033 Score=67.91 Aligned_cols=28 Identities=39% Similarity=0.871 Sum_probs=25.0
Q ss_pred ccccccccCC-CCCCCCCccCcCCCCccc
Q 005857 120 ASHTYCVGMG-NAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 120 afH~~CL~pp-~~VP~gdW~Cp~Cr~~~~ 147 (673)
.||++||.|| ..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 4899999998 889999999999997643
No 51
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00022 Score=74.64 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=41.3
Q ss_pred CCCcccccccccccccCC-------CcEeccCCCccCHhHHHHHH--HhcCCCCCCccccc
Q 005857 3 GLHSRSCGICLMDEGKSI-------RGQIDSCDHYFCFVCIMEWA--KIESKCPMCKRRFT 54 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~-------~~~Ld~CgH~FC~~CI~eWs--k~k~sCPlCRkeFt 54 (673)
..++..|+||-..+.... ..-.++|+|.||..||+-|. ..+.+||.|++++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 467889999999885332 33456899999999999997 45789999998754
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.86 E-value=0.00081 Score=53.66 Aligned_cols=42 Identities=24% Similarity=0.677 Sum_probs=32.7
Q ss_pred cccccccccccCCCcEeccCC-----CccCHhHHHHHHHh--cCCCCCCc
Q 005857 8 SCGICLMDEGKSIRGQIDSCD-----HYFCFVCIMEWAKI--ESKCPMCK 50 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~Cg-----H~FC~~CI~eWsk~--k~sCPlCR 50 (673)
.|.||++.. +....++.||. |+||..|+.+|... +..||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999833 33446678884 99999999999955 45899995
No 53
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.84 E-value=0.00035 Score=80.87 Aligned_cols=59 Identities=29% Similarity=0.735 Sum_probs=47.7
Q ss_pred cccccccccCCCC--ccccccccccccccccccccCCCCCCCCCccCcCCCCccccCCCccccC
Q 005857 95 AYVRCNVCQGTTY--ESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRDEHDNAEIET 156 (673)
Q Consensus 95 e~~~CsVC~~~d~--ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~e~~~~~~e~ 156 (673)
+.+.|+||...+. ...|+|||.|+...|..|+++. ++|++.|+|..|... ....+.+.+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIl-e~p~gpWlCr~Calg--~~ppCvLCP 330 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGIL-EVPEGPWLCRTCALG--IEPPCVLCP 330 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhcee-ecCCCCeeehhcccc--CCCCeeecc
Confidence 4578999987753 4579999999999999999998 899999999999775 334444444
No 54
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.84 E-value=0.00027 Score=88.20 Aligned_cols=53 Identities=32% Similarity=0.832 Sum_probs=47.8
Q ss_pred cccccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCccc
Q 005857 95 AYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 95 e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~~ 147 (673)
....|.+|........|+.|+.|..++|++|+.|. ..+|.++|+|+.|+....
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 34679999998888889999999999999999987 789999999999998764
No 55
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00056 Score=72.62 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=42.3
Q ss_pred CCCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHh-cCCCCCCcccccccc
Q 005857 2 EGLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRFTSIR 57 (673)
Q Consensus 2 e~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeFt~I~ 57 (673)
+..-..+|+||+... +.++.+.|+|.||+-||+--... ...|++||.+|..-.
T Consensus 3 p~~~~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 3 PRTKKKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcccCCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 455678999999965 45688899999999999875544 456999999986554
No 56
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.79 E-value=0.00041 Score=59.07 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=23.4
Q ss_pred cccccccccccc-cC--CCcEec--cCCCccCHhHHHHHHHh--c---------CCCCCCccccc
Q 005857 6 SRSCGICLMDEG-KS--IRGQID--SCDHYFCFVCIMEWAKI--E---------SKCPMCKRRFT 54 (673)
Q Consensus 6 d~~CpICLE~f~-~~--~~~~Ld--~CgH~FC~~CI~eWsk~--k---------~sCPlCRkeFt 54 (673)
+..|+||+..+. .. +..+.. .|+..||..||.+|... . ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999864 22 234444 69999999999999853 1 24999998765
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00057 Score=79.64 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=38.7
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh-cCCCCCCccccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRFTSI 56 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeFt~I 56 (673)
++|++|-+-..+ .++..|+|.||+.||++..+. ...||.|.+.|..-
T Consensus 644 LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 689999976644 567789999999999998876 46799999988643
No 58
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.67 E-value=0.0011 Score=74.23 Aligned_cols=49 Identities=29% Similarity=0.763 Sum_probs=42.6
Q ss_pred ccccccccCCCCccccccccccccccccccccCC-CCCCCCC----ccCcCCCC
Q 005857 96 YVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGD----WFCHDCTV 144 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gd----W~Cp~Cr~ 144 (673)
...|.+|....+...++.||.|..-||+.||.|| +.+|... |.|..|..
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 4679999999888899999999999999999998 6777543 99999944
No 59
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.60 E-value=0.00045 Score=58.37 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=23.3
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
+.+.|++|.+.+.. ...+..|.|.||..||..... ..||+|+.+-.
T Consensus 6 ~lLrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HhcCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 34789999998843 234677999999999977544 45999987743
No 60
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=96.23 E-value=0.0058 Score=69.67 Aligned_cols=126 Identities=23% Similarity=0.494 Sum_probs=96.1
Q ss_pred Cccccccccccccc-CCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccccCCCCCCCCCcceeeeecccccccccc
Q 005857 5 HSRSCGICLMDEGK-SIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIRRPPKDGVFPRERFVVVPKRDQIYGGF 83 (673)
Q Consensus 5 Ed~~CpICLE~f~~-~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~~~~vdG~f~nErLv~VpeRdQvyeps 83 (673)
....|.+|+..... ..+++...|.+.+|+.|++.|......|+.|.+.+..+......| +-.+.+++++|++...
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~r~G----~~~~~~~~~~~~~~~t 334 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEARQG----EHVIPVPKNDQLVKPT 334 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccccccccC----Cccccccccchhhhcc
Confidence 45679999997752 345677779999999999999999999999999999888665554 3345677888877655
Q ss_pred cccccCCCCcccccccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCCcc
Q 005857 84 GIASSRTADPYAYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 84 eEEs~~eeDp~e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~ 146 (673)
.... .-+++....|..|........+ .-|.+|++....++.+ +|..|....
T Consensus 335 ~~r~--~~r~~r~~~~s~~r~~s~~~~s--------~s~s~~~~lg~~~~rs--~~~~~~~~~ 385 (553)
T KOG4430|consen 335 TERL--RLRPQRSIRSSECRQSSWDARS--------SSPSYCSELGFEVSRS--SCEGCSPVA 385 (553)
T ss_pred chhh--hcchhhhccccccccccccccc--------cCcccchhhccccccc--cccccchhh
Confidence 4433 5667777889999887654433 6799999988777776 888887543
No 61
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0011 Score=54.62 Aligned_cols=51 Identities=22% Similarity=0.655 Sum_probs=38.2
Q ss_pred CCcccccccccccccCCCcEeccCCCc-cCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHY-FCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~-FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
+-+++|.||+|.-.+ .++-.|+|. .|+.|-.+ |-...-.||+||+++..+.
T Consensus 5 ~~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI 57 (62)
T ss_pred ccccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence 345899999995433 456679997 89999654 5556789999999876554
No 62
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0059 Score=66.27 Aligned_cols=50 Identities=22% Similarity=0.648 Sum_probs=41.3
Q ss_pred CcccccccccccccCCCcEeccCCCc-cCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHY-FCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~-FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
...+|-|||....+ .+++||-|. .|..|-+.---..+.||+||+.+..+.
T Consensus 289 ~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELL 339 (349)
T ss_pred CCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHhhh
Confidence 35799999997755 688899998 899998876655788999999987665
No 63
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0057 Score=67.85 Aligned_cols=50 Identities=22% Similarity=0.645 Sum_probs=41.6
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
.+..|-||+..+.. ++..+|+|.||..||..-+.....||.||.++....
T Consensus 83 sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 83 SEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQETECPLCRDELVELP 132 (398)
T ss_pred chhhhhhhHhhcCC---CccccccccccHHHHHHHhccCCCCcccccccccch
Confidence 35789999998843 566699999999999997777889999999987533
No 64
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.64 E-value=0.0017 Score=48.85 Aligned_cols=34 Identities=47% Similarity=1.216 Sum_probs=19.3
Q ss_pred cccccccccccccccccccCCCCCCCC-CccCcCCC
Q 005857 109 SLLLLCDLCDTASHTYCVGMGNAVPEG-DWFCHDCT 143 (673)
Q Consensus 109 e~LL~CD~Cd~afH~~CL~pp~~VP~g-dW~Cp~Cr 143 (673)
+.+++|+.|....|..|.+.. .+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~-~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVS-EVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-S-S--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcc-cCCCCCcEECCcCC
Confidence 368999999999999999987 44555 79998874
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.60 E-value=0.0035 Score=67.39 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=41.4
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSI 56 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I 56 (673)
....+|.+|--.|.+. -++.-|.|+||..||.+.+....+||.|...++.-
T Consensus 13 n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3457899999888542 45667999999999999998899999998776544
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0065 Score=66.59 Aligned_cols=44 Identities=30% Similarity=0.846 Sum_probs=35.6
Q ss_pred ccccccccccc-cCCCcEeccCCCccCHhHHHHHHHhc---CCCCCCc
Q 005857 7 RSCGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKIE---SKCPMCK 50 (673)
Q Consensus 7 ~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~k---~sCPlCR 50 (673)
..|.||.+.+. +.+.+-+..|||+||..|+..|.+.. ..||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 57999966553 35667777799999999999999873 4799998
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.017 Score=61.11 Aligned_cols=52 Identities=23% Similarity=0.657 Sum_probs=38.9
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHHH--hcCCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK--IESKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk--~k~sCPlCRkeFt~I~ 57 (673)
..+.+|++|-+.- +..-...+|+|.||+.||..-.. ....||.|......+.
T Consensus 237 t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 3567999999843 44456667999999999987543 2478999998766544
No 68
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.12 E-value=0.004 Score=68.92 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHH
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWA 40 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWs 40 (673)
+|++.|+||..-|++ +++++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhc
Confidence 468999999998865 7888999999999987543
No 69
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.10 E-value=0.0082 Score=64.01 Aligned_cols=52 Identities=31% Similarity=0.735 Sum_probs=40.0
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHH------------------h-----cCCCCCCcccccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK------------------I-----ESKCPMCKRRFTSIR 57 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk------------------~-----k~sCPlCRkeFt~I~ 57 (673)
.-.|.|||..|.+.+-.+...|.|+||+.|+..++. . .-.||+||.++....
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 457999999998777677788999999999765531 0 235999998866544
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.08 E-value=0.013 Score=69.26 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=41.3
Q ss_pred Cccccccccccccc-CCCcEeccCCCccCHhHHHHHHHh-------cCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGK-SIRGQIDSCDHYFCFVCIMEWAKI-------ESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~-~~~~~Ld~CgH~FC~~CI~eWsk~-------k~sCPlCRkeFt~I~ 57 (673)
+..+|.||++.+.. ..+.....|.|.||+.||++|+.. .|.||.|......++
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~ 250 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVP 250 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCC
Confidence 45789999999863 344556779999999999999853 489999986555444
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.02 E-value=0.0092 Score=67.49 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=41.0
Q ss_pred CCCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHh-----cCCCCCCccccccc
Q 005857 2 EGLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI-----ESKCPMCKRRFTSI 56 (673)
Q Consensus 2 e~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~-----k~sCPlCRkeFt~I 56 (673)
+..++.+|.+|-+.-.+ .+...|.|.||.-||.++... ...||.|...+..-
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 45677899999997644 677789999999999988643 46899998776543
No 72
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.88 E-value=0.013 Score=64.44 Aligned_cols=48 Identities=25% Similarity=0.812 Sum_probs=39.4
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh--cCCCCCCcccccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI--ESKCPMCKRRFTSIR 57 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~--k~sCPlCRkeFt~I~ 57 (673)
..|-||-|.- ...++.+|+|..|-.|+..|... ...||.||.++....
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3599999854 33788899999999999999844 578999999876554
No 73
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.017 Score=63.81 Aligned_cols=49 Identities=31% Similarity=0.665 Sum_probs=38.5
Q ss_pred ccccccccccccc--CCCcEeccCCCccCHhHHHHHHH--hcCCCCCCccccc
Q 005857 6 SRSCGICLMDEGK--SIRGQIDSCDHYFCFVCIMEWAK--IESKCPMCKRRFT 54 (673)
Q Consensus 6 d~~CpICLE~f~~--~~~~~Ld~CgH~FC~~CI~eWsk--~k~sCPlCRkeFt 54 (673)
..+|||||+.+.. .-+...+.|+|.|-..||++|+. .+..||.|..+-+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4689999998852 23456778999999999999994 3568999987533
No 74
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.81 E-value=0.013 Score=64.72 Aligned_cols=54 Identities=28% Similarity=0.635 Sum_probs=44.4
Q ss_pred CCcccccccccccccCCCcEe-ccCCCccCHhHHHHHHHhcCCCCCCccccccccCCC
Q 005857 4 LHSRSCGICLMDEGKSIRGQI-DSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIRRPP 60 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~L-d~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~~~~ 60 (673)
.+++.|+||..++.+ +.. ..|+|.||..|+.+|......||.|+.+.+.....+
T Consensus 19 ~~~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccC---CCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 456899999999965 333 479999999999999988889999998877666443
No 75
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.57 E-value=0.021 Score=70.26 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=41.0
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHHHhc----------CCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIE----------SKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k----------~sCPlCRkeFt~I~ 57 (673)
..+++|.||...-......+-+.|+|.||+.|.+.-+++. ..||+|+.++.-+.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 3478999999876555556667799999999987766553 36999998866554
No 76
>PHA03096 p28-like protein; Provisional
Probab=94.54 E-value=0.019 Score=61.20 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=34.5
Q ss_pred cccccccccccc-----CCCcEeccCCCccCHhHHHHHHHh---cCCCCCCccc
Q 005857 7 RSCGICLMDEGK-----SIRGQIDSCDHYFCFVCIMEWAKI---ESKCPMCKRR 52 (673)
Q Consensus 7 ~~CpICLE~f~~-----~~~~~Ld~CgH~FC~~CI~eWsk~---k~sCPlCRke 52 (673)
.+|+||++.... ...+.+..|.|.||..||..|-.. ...||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 689999998742 345788899999999999999744 2345555543
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.011 Score=65.28 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=35.9
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh--------cCCCCCCccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI--------ESKCPMCKRR 52 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~--------k~sCPlCRke 52 (673)
..|-||++..........++|.|+||..|+...... ...||-++-.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 469999998865566788899999999999987643 3568876543
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.77 E-value=0.028 Score=61.92 Aligned_cols=53 Identities=32% Similarity=0.652 Sum_probs=40.8
Q ss_pred cccccccccccc-cCCCcEeccCCCccCHhHHHHHHHh--cCCCCCCccccccccC
Q 005857 6 SRSCGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKI--ESKCPMCKRRFTSIRR 58 (673)
Q Consensus 6 d~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~--k~sCPlCRkeFt~I~~ 58 (673)
++.|+.|-+.+. ..+...-++|.|+||..|+.+.++. ..+||.||+-...+..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~r 420 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKR 420 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccC
Confidence 468999999885 3345566789999999999999865 4689999965444443
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.64 E-value=0.047 Score=43.91 Aligned_cols=45 Identities=18% Similarity=0.504 Sum_probs=22.5
Q ss_pred ccccccccccCC-CcEeccCCCccCHhHHHHHHH-hcCCCCCCcccc
Q 005857 9 CGICLMDEGKSI-RGQIDSCDHYFCFVCIMEWAK-IESKCPMCKRRF 53 (673)
Q Consensus 9 CpICLE~f~~~~-~~~Ld~CgH~FC~~CI~eWsk-~k~sCPlCRkeF 53 (673)
|++|.+.++... ...+=.|++.+|..|...-.+ ....||-||++|
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 899999985332 233335899999999888775 367899999886
No 80
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.051 Score=59.26 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=43.0
Q ss_pred CCCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 2 EGLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 2 e~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
+..|+..|+||+-.- ...+..||+|.-|..||...+-+...|=.|+..+....
T Consensus 418 p~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 346789999999743 44788899999999999999888888999987765433
No 81
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.98 E-value=0.035 Score=56.44 Aligned_cols=46 Identities=26% Similarity=0.638 Sum_probs=37.7
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
..|.||.+.|.. ++...|+|.||..|...-.+....|-+|.+..+-
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 379999999854 6677799999999987777777889999876543
No 82
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.036 Score=59.15 Aligned_cols=47 Identities=28% Similarity=0.573 Sum_probs=39.7
Q ss_pred cccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 8 SCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
.|.||...|.. ++...|+|+||..|-..-......|.+|.+..+.+.
T Consensus 243 ~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 243 KCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccc---chhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 59999998854 677789999999998877777788999998876655
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.29 E-value=0.076 Score=57.66 Aligned_cols=54 Identities=17% Similarity=0.428 Sum_probs=38.6
Q ss_pred CCCcccccccccccccCC-CcEeccCCCccCHhHHHHHHHh-cCCCCCCccccccc
Q 005857 3 GLHSRSCGICLMDEGKSI-RGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRFTSI 56 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~-~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeFt~I 56 (673)
..|++.||.|+|.++-.+ .-.+-+|+...|.-|....-+. .-+||.||..|...
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 346678999999986322 2344469999999997665443 56899999876543
No 84
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=91.53 E-value=0.074 Score=43.93 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=27.0
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHHHh--cCCCCC
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI--ESKCPM 48 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~--k~sCPl 48 (673)
.-+..|||.+..|.+ ...-..|+|.|....|.+|... ...||.
T Consensus 9 ~~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 345799999999954 2333479999999999999933 457998
No 85
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=91.08 E-value=0.25 Score=57.94 Aligned_cols=115 Identities=15% Similarity=0.342 Sum_probs=63.1
Q ss_pred CCccCHhHHHHHHHhcCCCCCCccccccccCCCCCCCCCcceeeeecccccccccccccc---cCCCCcccccccccccC
Q 005857 28 DHYFCFVCIMEWAKIESKCPMCKRRFTSIRRPPKDGVFPRERFVVVPKRDQIYGGFGIAS---SRTADPYAYVRCNVCQG 104 (673)
Q Consensus 28 gH~FC~~CI~eWsk~k~sCPlCRkeFt~I~~~~vdG~f~nErLv~VpeRdQvyepseEEs---~~eeDp~e~~~CsVC~~ 104 (673)
+-|||.+|-..---...+|-+|-...-.+.+-+..|.--...-+.|++..=..-...|.. .+..|.|+ ..|.+|.+
T Consensus 47 GpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfn-KtCYIC~E 125 (900)
T KOG0956|consen 47 GPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFN-KTCYICNE 125 (900)
T ss_pred CchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhc-ceeeeecc
Confidence 677999998665444578999987766666554444311111111222110000001111 23334443 68999998
Q ss_pred CCCc-----ccccccc--ccccccccccccCC-----CC--CCCCCccCcCCC
Q 005857 105 TTYE-----SLLLLCD--LCDTASHTYCVGMG-----NA--VPEGDWFCHDCT 143 (673)
Q Consensus 105 ~d~e-----e~LL~CD--~Cd~afH~~CL~pp-----~~--VP~gdW~Cp~Cr 143 (673)
.+++ +..|-|. .|..+||..|-+.. ++ +-+.--||--|.
T Consensus 126 ~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk 178 (900)
T KOG0956|consen 126 EGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCK 178 (900)
T ss_pred cCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHH
Confidence 7643 3456664 77789999998753 11 222336787773
No 86
>PHA02862 5L protein; Provisional
Probab=90.85 E-value=0.15 Score=49.69 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=37.1
Q ss_pred cccccccccccccCCCcEeccC-----CCccCHhHHHHHHHh--cCCCCCCcccccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSC-----DHYFCFVCIMEWAKI--ESKCPMCKRRFTSIR 57 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~C-----gH~FC~~CI~eWsk~--k~sCPlCRkeFt~I~ 57 (673)
++.|-||++..++. ..|| ..+-|..|+++|.+. +..|++|+.+|..-.
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 47899999976432 3455 667999999999965 568999999987544
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.50 E-value=0.2 Score=52.48 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=41.0
Q ss_pred CCccccccccccccc-CCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccccc
Q 005857 4 LHSRSCGICLMDEGK-SIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSI 56 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~-~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I 56 (673)
.....|||....|.. .....+-+|||.|+..+|.+-. ....||+|.++|...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 345689999999953 2345677899999999999874 456799999998844
No 88
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=0.22 Score=51.65 Aligned_cols=51 Identities=22% Similarity=0.435 Sum_probs=38.7
Q ss_pred CCCcccccccccccccCCCcEeccCCCccCHhHHHHHHHh--------cCCCCCCccccc
Q 005857 3 GLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI--------ESKCPMCKRRFT 54 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~--------k~sCPlCRkeFt 54 (673)
+.....|..|-..+...+ .+-+.|.|.||.+|+.+|... ...||.|..++.
T Consensus 47 sDY~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred cCCCCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 345678999998886544 344469999999999999854 257999987743
No 89
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=89.88 E-value=0.25 Score=56.08 Aligned_cols=69 Identities=28% Similarity=0.589 Sum_probs=51.2
Q ss_pred ccccccccCC--CCccccccccccccccccccccCC--CCCCC-------CCccCcCCCCccccCCCccccCCccccccC
Q 005857 96 YVRCNVCQGT--TYESLLLLCDLCDTASHTYCVGMG--NAVPE-------GDWFCHDCTVLRDEHDNAEIETDTETVFGD 164 (673)
Q Consensus 96 ~~~CsVC~~~--d~ee~LL~CD~Cd~afH~~CL~pp--~~VP~-------gdW~Cp~Cr~~~~e~~~~~~e~~~~~~F~~ 164 (673)
.+.|.||... .+.+.++.||.|+...|-.|++.. ..||. ..|||.-|+..... ..++..+....+|+.
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~-P~CElCPn~~GifKe 197 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL-PHCELCPNRFGIFKE 197 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC-CccccCCCcCCcccc
Confidence 3579999654 345679999999999999999965 23443 46999999987654 667777766666765
Q ss_pred C
Q 005857 165 G 165 (673)
Q Consensus 165 ~ 165 (673)
+
T Consensus 198 t 198 (707)
T KOG0957|consen 198 T 198 (707)
T ss_pred c
Confidence 4
No 90
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.81 E-value=0.16 Score=54.44 Aligned_cols=44 Identities=30% Similarity=0.612 Sum_probs=35.1
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHH-HhcCCCCCCccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWA-KIESKCPMCKRR 52 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWs-k~k~sCPlCRke 52 (673)
+.|+.|.-.+.. .....+|+|.||..||..-+ +....||.|...
T Consensus 275 LkCplc~~Llrn--p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRN--PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhC--cccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 789999988744 23446899999999998754 667899999764
No 91
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.70 E-value=0.2 Score=52.66 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=38.2
Q ss_pred cccccccccccc---CCCcEeccCCCccCHhHHHHHHHh-cCCCCCCcccc
Q 005857 7 RSCGICLMDEGK---SIRGQIDSCDHYFCFVCIMEWAKI-ESKCPMCKRRF 53 (673)
Q Consensus 7 ~~CpICLE~f~~---~~~~~Ld~CgH~FC~~CI~eWsk~-k~sCPlCRkeF 53 (673)
+.|.||-+.|.. ...+..+.|+|.||..|+.+-... ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 689999999953 244677789999999999887654 56799999885
No 92
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.02 E-value=0.28 Score=38.90 Aligned_cols=40 Identities=33% Similarity=0.817 Sum_probs=26.8
Q ss_pred ccccccccccCCCcEeccC-----CCccCHhHHHHHHHh--cCCCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSC-----DHYFCFVCIMEWAKI--ESKCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~C-----gH~FC~~CI~eWsk~--k~sCPlC 49 (673)
|-||++...+.. .++.+| ..+.|..|+..|... ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999875433 677777 247899999999864 4678887
No 93
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=0.12 Score=57.25 Aligned_cols=50 Identities=30% Similarity=0.722 Sum_probs=32.9
Q ss_pred cccccccc-cccccCCCcEeccCCCccCHhHHHHHHHh------cCCCCC--Ccccccc
Q 005857 6 SRSCGICL-MDEGKSIRGQIDSCDHYFCFVCIMEWAKI------ESKCPM--CKRRFTS 55 (673)
Q Consensus 6 d~~CpICL-E~f~~~~~~~Ld~CgH~FC~~CI~eWsk~------k~sCPl--CRkeFt~ 55 (673)
..+|.||+ +............|+|.||..|+....+. ...||. |...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 46899999 43322122336779999999999987654 346773 6555443
No 94
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.52 E-value=0.32 Score=57.79 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=41.7
Q ss_pred Cccccccccccccc----CCCcEeccCCCccCHhHHHHHHHh------cCCCCCCccccccccCCC
Q 005857 5 HSRSCGICLMDEGK----SIRGQIDSCDHYFCFVCIMEWAKI------ESKCPMCKRRFTSIRRPP 60 (673)
Q Consensus 5 Ed~~CpICLE~f~~----~~~~~Ld~CgH~FC~~CI~eWsk~------k~sCPlCRkeFt~I~~~~ 60 (673)
+.+.|.||...+.+ -.+..+..|+|.||..||..|... ...|++|...|..|.+..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 45678888777743 233445569999999999999854 457999999999888543
No 95
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=88.15 E-value=0.4 Score=47.46 Aligned_cols=51 Identities=20% Similarity=0.561 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCCCcEeccC--CC---ccCHhHHHHHHHh--cCCCCCCcccccccc
Q 005857 3 GLHSRSCGICLMDEGKSIRGQIDSC--DH---YFCFVCIMEWAKI--ESKCPMCKRRFTSIR 57 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld~C--gH---~FC~~CI~eWsk~--k~sCPlCRkeFt~I~ 57 (673)
+..+..|-||.+.... ...|| .. +-|..|++.|... ...|++|+.+|....
T Consensus 5 s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 5 SLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 3556899999987532 23455 33 5699999999965 568999999987664
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=0.48 Score=49.86 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=41.9
Q ss_pred CcccccccccccccCC-CcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 5 HSRSCGICLMDEGKSI-RGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~-~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
....||||.+.+.+.. -..+-+|+|.||..|.++.......||+|.++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 3468999999997543 3567889999999999999988899999988754
No 97
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=86.40 E-value=0.37 Score=39.90 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=33.6
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
...|-.|... ...+.+++|+|..|..|..-+ .-+-||.|.++|..
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 4567777763 345788899999999997643 33679999988764
No 98
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=84.84 E-value=0.4 Score=47.88 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=34.4
Q ss_pred cccccc---CCCCccccccccccccccccccccCC-------CCCCCCC--ccCcCCCCc
Q 005857 98 RCNVCQ---GTTYESLLLLCDLCDTASHTYCVGMG-------NAVPEGD--WFCHDCTVL 145 (673)
Q Consensus 98 ~CsVC~---~~d~ee~LL~CD~Cd~afH~~CL~pp-------~~VP~gd--W~Cp~Cr~~ 145 (673)
.|.+|. .....+.|++|.+|..+||..||++- +.|..++ ..|..|.-.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 488885 33345789999999999999999974 3444444 347777543
No 99
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.83 E-value=0.44 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=13.8
Q ss_pred CcccccccccccccCCCcEeccC
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSC 27 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~C 27 (673)
|+.+||||||.-.+ ++|+-|
T Consensus 1 ed~~CpICme~PHN---AVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHN---AVLLLC 20 (162)
T ss_pred CCccCceeccCCCc---eEEEEe
Confidence 57899999996533 444445
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.29 Score=52.82 Aligned_cols=45 Identities=31% Similarity=0.809 Sum_probs=32.2
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
|--|--.+ ...+.+.+|.|.||++|...-. ...||.|..++..|.
T Consensus 93 Cd~Cd~PI--~IYGRmIPCkHvFCl~CAr~~~--dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 93 CDRCDFPI--AIYGRMIPCKHVFCLECARSDS--DKICPLCDDRVQRIE 137 (389)
T ss_pred ecccCCcc--eeeecccccchhhhhhhhhcCc--cccCcCcccHHHHHH
Confidence 55554433 3447788899999999986532 457999988776665
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=0.57 Score=49.53 Aligned_cols=54 Identities=19% Similarity=0.588 Sum_probs=41.4
Q ss_pred CCcccccccccccccCCCc-EeccC-----CCccCHhHHHHHHHhc--------CCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRG-QIDSC-----DHYFCFVCIMEWAKIE--------SKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~-~Ld~C-----gH~FC~~CI~eWsk~k--------~sCPlCRkeFt~I~ 57 (673)
+.+..|=||+..-++.... .+.|| .|+-|..|+..|...+ ..||.|+.+|....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 4467899999877554433 67787 7899999999998542 36999999977655
No 102
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.70 E-value=0.41 Score=46.17 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=26.8
Q ss_pred cccccccccccccCCCcE-eccC------CCccCHhHHHHHHHhc
Q 005857 6 SRSCGICLMDEGKSIRGQ-IDSC------DHYFCFVCIMEWAKIE 43 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~-Ld~C------gH~FC~~CI~eWsk~k 43 (673)
..+|.||++.+.+ ..|+ ..+| .|.||..|+.+|.+..
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 5789999999965 2333 2335 5679999999996443
No 103
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=81.87 E-value=0.82 Score=48.87 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=38.2
Q ss_pred Ccccccccccccc-cCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcc
Q 005857 5 HSRSCGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKR 51 (673)
Q Consensus 5 Ed~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRk 51 (673)
.+..||||.+.+- ....+..++|+|+.++.|.++.......||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4566999999874 3455677889999999999998766689999987
No 104
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.68 E-value=0.48 Score=49.45 Aligned_cols=48 Identities=25% Similarity=0.608 Sum_probs=34.4
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
..|.-|.--- ....-.+..|.|.||..|...-.. ..||+|++.+..+.
T Consensus 4 VhCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 4 VHCNKCFRFP-SQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQ 51 (233)
T ss_pred EEeccccccC-CCCceeeeechhhhhhhhcccCCc--cccccccceeeeee
Confidence 4577777533 344456788999999999875433 27999999966555
No 105
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=1.1 Score=48.87 Aligned_cols=46 Identities=20% Similarity=0.546 Sum_probs=36.1
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRR 52 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRke 52 (673)
+...|+||+.... +..++..=|..||..||-........||+-..+
T Consensus 299 ~~~~CpvClk~r~--Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQ--NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccC--CCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 3468999999763 334555569999999999999988999986544
No 106
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.27 E-value=1.2 Score=48.80 Aligned_cols=52 Identities=19% Similarity=0.568 Sum_probs=38.9
Q ss_pred CCCcccccccccccccCCCcEeccCCCccCHhHHHHH--HHhcCCCCCCcccccccc
Q 005857 3 GLHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEW--AKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eW--sk~k~sCPlCRkeFt~I~ 57 (673)
.+|+..|-||-+.+. ...+.||+|..|..|-... +-....||+||.+...+.
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 456678999999762 2466799999999997542 344678999999865544
No 107
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.14 E-value=0.64 Score=49.26 Aligned_cols=136 Identities=14% Similarity=0.237 Sum_probs=71.9
Q ss_pred ccccccccc-ccc-cCCCcEeccCCCccCHhHHHHHHHh---------------cCCCCCCccccccccCCCCC---C-C
Q 005857 6 SRSCGICLM-DEG-KSIRGQIDSCDHYFCFVCIMEWAKI---------------ESKCPMCKRRFTSIRRPPKD---G-V 64 (673)
Q Consensus 6 d~~CpICLE-~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~---------------k~sCPlCRkeFt~I~~~~vd---G-~ 64 (673)
...|++|+. .+. +.+..++.+|++.||..|..-|... ...||.|+-.-......... . .
T Consensus 95 ~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~~~k~t~~~h~as~~~l~~~~~~i~l~~~~~e~~~dlt~~~l~ 174 (271)
T COG5574 95 EETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSIDLKQTANTHEASPSQLLKFLPTIRLAMNIPEVISDLTAVALS 174 (271)
T ss_pred ccccccccCcccccccccceeeecccccchhhhHHHHHHHHHhhcCCCCCHHHHhccCCeeecccCChHHHHHHHHHHHh
Confidence 457888887 332 3445678889999999999888751 24577666543322211100 0 0
Q ss_pred CCcceeeee-cccccc---ccccccc--c---cCCCCcccccccccccCCCCccccccccccccccccccccCCCCCCCC
Q 005857 65 FPRERFVVV-PKRDQI---YGGFGIA--S---SRTADPYAYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEG 135 (673)
Q Consensus 65 f~nErLv~V-peRdQv---yepseEE--s---~~eeDp~e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~g 135 (673)
+.+.+...+ +..+.. ......+ + ....-+.....|.+|.... ....|-.|+..||+.|+-.. .--..
T Consensus 175 l~~sr~~~i~q~sn~~~~~~q~Itken~s~kn~~pfip~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~-~t~~k 250 (271)
T COG5574 175 LDESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIPLADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLIS-WTKKK 250 (271)
T ss_pred cCchhcCccccccCCcccceeecccccccccccCCcccccccceeeeeccc---CCcccccccchhhHHHHHHH-HHhhc
Confidence 000111110 000000 0000000 0 1122234456799998753 35678899999999999753 00112
Q ss_pred CccCcCCCCc
Q 005857 136 DWFCHDCTVL 145 (673)
Q Consensus 136 dW~Cp~Cr~~ 145 (673)
.-|||.|+..
T Consensus 251 ~~~CplCRak 260 (271)
T COG5574 251 YEFCPLCRAK 260 (271)
T ss_pred cccCchhhhh
Confidence 3579999864
No 108
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=80.66 E-value=0.69 Score=40.86 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=26.2
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHH
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIM 37 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~ 37 (673)
++..|+||...+.. .....-||+|.||+.|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 46789999999954 446677899999999985
No 109
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.23 E-value=0.59 Score=58.24 Aligned_cols=45 Identities=36% Similarity=0.739 Sum_probs=37.8
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKR 51 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRk 51 (673)
+...|.||++.+.. .+.+-.|+|.||..|+..|......||.|+.
T Consensus 1152 ~~~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34579999999842 3455569999999999999999999999984
No 110
>PF08236 SRI: SRI (Set2 Rpb1 interacting) domain; InterPro: IPR013257 The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilises the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation []. ; GO: 0018024 histone-lysine N-methyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0034968 histone lysine methylation, 0005694 chromosome; PDB: 2A7O_A 2C5Z_A.
Probab=77.44 E-value=4.4 Score=36.20 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHhccccccccccchHHHHHHHHHhhHHHHHh
Q 005857 565 YDHAKCEIQSLVKLNLKCLSRDKRLEYDAFKKVAKLATHTILAS 608 (673)
Q Consensus 565 ~~~~k~~i~~~v~~~lk~l~~dk~~g~~~fk~var~athtilaa 608 (673)
-+.-+..|...|..-|+....+ +|.|.||..||--||+|++.
T Consensus 6 ~~~~~~~l~~~V~~~l~~y~~~--~~~ddfK~~ar~lt~~l~~K 47 (88)
T PF08236_consen 6 EKKFRKTLAKHVVNLLNKYRKK--LSKDDFKHLARKLTHKLVEK 47 (88)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTT----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccc--CCHHHHHHHHHHHHHHHHHH
Confidence 3466778999999999988776 99999999999999999985
No 111
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=76.87 E-value=1.8 Score=34.89 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=20.8
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHH-----hcCCCCCCccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK-----IESKCPMCKRR 52 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk-----~k~sCPlCRke 52 (673)
++.|+|....+. ....-..|.|.-||+=. .|++ ..+.||.|.++
T Consensus 2 sL~CPls~~~i~--~P~Rg~~C~H~~CFDl~-~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIR--IPVRGKNCKHLQCFDLE-SFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-S--SEEEETT--SS--EEHH-HHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEE--eCccCCcCcccceECHH-HHHHHhhccCCeECcCCcCc
Confidence 468999998873 33556669999888752 3332 25789999863
No 112
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.80 E-value=1.5 Score=51.29 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=38.4
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh------cCCCCCCccccccccC
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI------ESKCPMCKRRFTSIRR 58 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~------k~sCPlCRkeFt~I~~ 58 (673)
+.|.-|-....-.++..++.|.-.||+.||++-++. .|.||.|.........
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~~ 311 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINPK 311 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeecccc
Confidence 378888765433345778899999999999987432 5899999876555543
No 113
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=76.69 E-value=1.1 Score=37.04 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=27.9
Q ss_pred ccccccccCCCC-ccccccccccccccccccccC
Q 005857 96 YVRCNVCQGTTY-ESLLLLCDLCDTASHTYCVGM 128 (673)
Q Consensus 96 ~~~CsVC~~~d~-ee~LL~CD~Cd~afH~~CL~p 128 (673)
...|.+|++.-. .+.++.|..|+..||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 367999998753 567899999999999999964
No 114
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=2.3 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.768 Sum_probs=24.2
Q ss_pred ccCCCccCHhHHHHHHHhc-----------CCCCCCccccc
Q 005857 25 DSCDHYFCFVCIMEWAKIE-----------SKCPMCKRRFT 54 (673)
Q Consensus 25 d~CgH~FC~~CI~eWsk~k-----------~sCPlCRkeFt 54 (673)
..|+..||.-|+..|++.- -.||.|.+++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3499999999999999651 36999988754
No 115
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=73.51 E-value=0.65 Score=57.13 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHHHH----HhcCCCCCCccccccccCCCCCCCCCccee-eeeccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWA----KIESKCPMCKRRFTSIRRPPKDGVFPRERF-VVVPKRDQ 78 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWs----k~k~sCPlCRkeFt~I~~~~vdG~f~nErL-v~VpeRdQ 78 (673)
+.++-|-+|-+.. ....+..|...+|..|...-. +..+.|-+|+.. .+. ..+++.++.+.. ..+.
T Consensus 342 ~~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h--kvn-gvvd~vl~~~K~~~~iR---- 411 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH--KVN-GVVDCVLPPSKNVDSIR---- 411 (1414)
T ss_pred eecccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhh--ccC-cccccccChhhccccee----
Confidence 3457789998854 345666789999988876532 224667777632 111 011122211111 0011
Q ss_pred ccccccccccCCCCc--ccccccccccCCCCccccccccc-ccccccc-ccccCC---CCCCCCCccCcCCCCc
Q 005857 79 IYGGFGIASSRTADP--YAYVRCNVCQGTTYESLLLLCDL-CDTASHT-YCVGMG---NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 79 vyepseEEs~~eeDp--~e~~~CsVC~~~d~ee~LL~CD~-Cd~afH~-~CL~pp---~~VP~gdW~Cp~Cr~~ 145 (673)
+.+.+-+ .+... .....|.+|+.. +.++||.. |+.+||. .||+-. ..++++-|+|++|...
T Consensus 412 -~~~iG~d--r~gr~ywfi~rrl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 412 -HTPIGRD--RYGRKYWFISRRLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred -ccCCCcC--ccccchhceeeeeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 1111111 11111 123568888744 46789986 9999999 999932 5788999999999653
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.19 E-value=0.93 Score=47.63 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=35.7
Q ss_pred CCcccccccccccc--cCCCcEecc-CCCccCHhHHHHHH-HhcCCCC--CCcccc
Q 005857 4 LHSRSCGICLMDEG--KSIRGQIDS-CDHYFCFVCIMEWA-KIESKCP--MCKRRF 53 (673)
Q Consensus 4 ~Ed~~CpICLE~f~--~~~~~~Ld~-CgH~FC~~CI~eWs-k~k~sCP--lCRkeF 53 (673)
.++..||||..+.- ......+.| |.|..|..|+.... .....|| -|.+-+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45679999987541 233345666 99999999998754 4567899 786643
No 117
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=73.04 E-value=0.42 Score=37.40 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=32.7
Q ss_pred cccccccccccCCCcEeccCCCccCHhHHHHHHH------hcCCCCCCc
Q 005857 8 SCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAK------IESKCPMCK 50 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk------~k~sCPlCR 50 (673)
.|.||............+.|...||..|+..-.+ ..+.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4899999665566677888999999999865321 257888885
No 118
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.65 E-value=1.2 Score=47.93 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=37.4
Q ss_pred cccccccCCC------CccccccccccccccccccccCC----CCCCCCCccCcCCCCc
Q 005857 97 VRCNVCQGTT------YESLLLLCDLCDTASHTYCVGMG----NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 97 ~~CsVC~~~d------~ee~LL~CD~Cd~afH~~CL~pp----~~VP~gdW~Cp~Cr~~ 145 (673)
..|.+|-+.. ..+.+++|..|..++|.+|+.++ ..+-...|.|..|+..
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 4588887653 34568999999999999999976 2344678999998653
No 119
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=71.63 E-value=2.1 Score=52.94 Aligned_cols=47 Identities=32% Similarity=0.689 Sum_probs=39.8
Q ss_pred cccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCcc
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~ 146 (673)
..|.+|.+. +.++||..|++.||..|+.+| ..+|...|-|-.|...+
T Consensus 345 dhcrf~~d~---~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 345 DHCRFCHDL---GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred ccccccCcc---cceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 458888765 468899999999999999988 67999999999998543
No 120
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=71.23 E-value=1.8 Score=51.63 Aligned_cols=45 Identities=27% Similarity=0.643 Sum_probs=34.3
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh--cCCCCCCcccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI--ESKCPMCKRRFTS 55 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~--k~sCPlCRkeFt~ 55 (673)
..|.||++ . ....+..|+|.||..|+.+-... ...||.||..+..
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 58999999 3 33677789999999999875533 3469999876543
No 121
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=70.63 E-value=2.9 Score=40.56 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=37.1
Q ss_pred ccccccccccccCCCcEe-ccCCCccCHhHHHHHHHh---cCCCCCCcccccccc
Q 005857 7 RSCGICLMDEGKSIRGQI-DSCDHYFCFVCIMEWAKI---ESKCPMCKRRFTSIR 57 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~L-d~CgH~FC~~CI~eWsk~---k~sCPlCRkeFt~I~ 57 (673)
-+|-||.|...+....++ ..||...|..|-..-++. -..||.|+..|....
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 479999998754333333 358999999998764443 357999999987654
No 122
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=70.35 E-value=3.8 Score=50.25 Aligned_cols=51 Identities=45% Similarity=0.998 Sum_probs=43.2
Q ss_pred cccccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCcc
Q 005857 95 AYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 95 e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~ 146 (673)
....|..|.....+... .|+.|...+|.+|+.++ ..+++++|.|+.|....
T Consensus 154 ~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTP 205 (904)
T ss_pred cchhhhccccCCCccce-ecccccCcccccccCCCCCcCCcCcccCCcccccc
Confidence 34678899888766444 99999999999999987 78999999999998873
No 123
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=70.09 E-value=2.7 Score=45.50 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=33.4
Q ss_pred CcccccccccccccCCCcEeccC--CCccCHhHHHHHHHhcCCCCCCccccccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSC--DHYFCFVCIMEWAKIESKCPMCKRRFTSI 56 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~C--gH~FC~~CI~eWsk~k~sCPlCRkeFt~I 56 (673)
+-+.||||.+.+.. ++. .| ||.-|..|-. +..+.||.|+.++..+
T Consensus 47 ~lleCPvC~~~l~~---Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSP---PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcc---cce-ecCCCcEehhhhhh---hhcccCCccccccccH
Confidence 44789999998732 232 47 7888888875 4568899999987744
No 124
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.09 E-value=1.1 Score=53.04 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=36.0
Q ss_pred CCcccccccccccccCCCcEeccCCCccCHhHHHH---HHHhcCCCCCCcccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIME---WAKIESKCPMCKRRF 53 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~e---Wsk~k~sCPlCRkeF 53 (673)
+...+|+||+..+.. +.++.|.|.||..|+-. |.+....||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 345799999998844 47778999999999865 334467899998543
No 125
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=68.00 E-value=2.7 Score=50.54 Aligned_cols=52 Identities=27% Similarity=0.668 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCCcEeccCC-----CccCHhHHHHHHHh--cCCCCCCccccccc
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCD-----HYFCFVCIMEWAKI--ESKCPMCKRRFTSI 56 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~Cg-----H~FC~~CI~eWsk~--k~sCPlCRkeFt~I 56 (673)
.++..|-||...-.. ..++..||. .+.|..|+.+|... +..|-.|+.+|..-
T Consensus 10 ~d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 456789999986632 346777774 46899999999964 56799999886543
No 126
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=67.12 E-value=5.1 Score=35.56 Aligned_cols=57 Identities=25% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCCCccccccccccccc----CCCcEeccCCCccCHhHHHH-HHHhcCCCCCCccccccccC
Q 005857 2 EGLHSRSCGICLMDEGK----SIRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIRR 58 (673)
Q Consensus 2 e~~Ed~~CpICLE~f~~----~~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~~ 58 (673)
.......|-||-+.+.- .....+.-|+--.|..|.+= ..+....||.|+.+|.....
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 34567899999998742 22345567899999999864 34456789999998886653
No 128
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=66.92 E-value=5.6 Score=44.18 Aligned_cols=52 Identities=21% Similarity=0.721 Sum_probs=33.3
Q ss_pred CCCcccccccccccccCCCcEec----------------cCCCc-----cCHhHHHHHHHh-------------cCCCCC
Q 005857 3 GLHSRSCGICLMDEGKSIRGQID----------------SCDHY-----FCFVCIMEWAKI-------------ESKCPM 48 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~~~~~~Ld----------------~CgH~-----FC~~CI~eWsk~-------------k~sCPl 48 (673)
.+|.+.|-=|+..-.+ +.+.. .|..- .|..|+-+|.-. +..||+
T Consensus 268 ~~e~e~CigC~~~~~~--vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPt 345 (358)
T PF10272_consen 268 GQELEPCIGCMQAQPN--VKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPT 345 (358)
T ss_pred ccccCCccccccCCCC--cEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCC
Confidence 4677789889885422 11221 23333 488999998622 357999
Q ss_pred Cccccccc
Q 005857 49 CKRRFTSI 56 (673)
Q Consensus 49 CRkeFt~I 56 (673)
||+.|-.+
T Consensus 346 CRa~FCil 353 (358)
T PF10272_consen 346 CRAKFCIL 353 (358)
T ss_pred Ccccceee
Confidence 99998654
No 129
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=66.40 E-value=2.6 Score=34.18 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=26.8
Q ss_pred cccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCccccc
Q 005857 8 SCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFT 54 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt 54 (673)
.|--|.-. +++.+..=.|+.|..|+...+.....||+|.+++.
T Consensus 4 nCKsCWf~----~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFA----NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhc----CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 45566643 34566545899999999999999999999998754
No 130
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=65.94 E-value=2.8 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.324 Sum_probs=19.6
Q ss_pred CccccccccccccccccccccCC
Q 005857 107 YESLLLLCDLCDTASHTYCVGMG 129 (673)
Q Consensus 107 ~ee~LL~CD~Cd~afH~~CL~pp 129 (673)
.+++|+.|..|.+++|+..|-+.
T Consensus 120 ~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 120 PDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred hhheEEecCCccceeehhhCCCC
Confidence 45689999999999999999754
No 131
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=64.84 E-value=3 Score=32.65 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=21.4
Q ss_pred ccccccccccCCCcEeccCCCccCHhHHHHHHHhcC--CCCCC
Q 005857 9 CGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIES--KCPMC 49 (673)
Q Consensus 9 CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~--sCPlC 49 (673)
|.+|.+....+.+-.-..|.=.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778988774432222224888999999999876543 69987
No 132
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=63.91 E-value=1.7 Score=48.85 Aligned_cols=29 Identities=28% Similarity=0.569 Sum_probs=16.4
Q ss_pred cccccccCCC------Ccccccccccccccccccccc
Q 005857 97 VRCNVCQGTT------YESLLLLCDLCDTASHTYCVG 127 (673)
Q Consensus 97 ~~CsVC~~~d------~ee~LL~CD~Cd~afH~~CL~ 127 (673)
-.|.+|...- ++.+.+.| =++.||..|+.
T Consensus 395 PrCs~C~~PI~P~~G~~etvRvva--mdr~fHv~CY~ 429 (468)
T KOG1701|consen 395 PRCSVCGNPILPRDGKDETVRVVA--MDRDFHVNCYK 429 (468)
T ss_pred cchhhccCCccCCCCCcceEEEEE--cccccccccee
Confidence 4699997642 11222222 25678888874
No 133
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.37 E-value=8.9 Score=42.48 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=35.2
Q ss_pred cccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCCcc
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~ 146 (673)
+.|.+|.+.-.++..+.=-.|...||..|+++= +-...-+||.|+..-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpW--L~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPW--LTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhh--HhhcCccCCCCCCcC
Confidence 589999987655555555899999999999863 212223799998843
No 134
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=62.86 E-value=2.5 Score=49.72 Aligned_cols=67 Identities=25% Similarity=0.546 Sum_probs=43.6
Q ss_pred cccccccCCC--CccccccccccccccccccccCC--CCCCCCCccCcCCCCccccC-----CCccccCCcccccc
Q 005857 97 VRCNVCQGTT--YESLLLLCDLCDTASHTYCVGMG--NAVPEGDWFCHDCTVLRDEH-----DNAEIETDTETVFG 163 (673)
Q Consensus 97 ~~CsVC~~~d--~ee~LL~CD~Cd~afH~~CL~pp--~~VP~gdW~Cp~Cr~~~~e~-----~~~~~e~~~~~~F~ 163 (673)
..|.+|...+ .++.|+.|..|...||.+|+..- ..+-.+-|.|+.|+..-.-+ .++...+..+..|.
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh 94 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYH 94 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccccccccccc
Confidence 4577776554 45679999999999999999853 12223449999997754332 34444444444443
No 135
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=62.57 E-value=9.2 Score=45.87 Aligned_cols=50 Identities=8% Similarity=-0.140 Sum_probs=37.9
Q ss_pred cccccccCCCCccccccccccccccccccccCC-CCCCCCCccCcCCCCccccC
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG-NAVPEGDWFCHDCTVLRDEH 149 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp-~~VP~gdW~Cp~Cr~~~~e~ 149 (673)
..|.+|... ..+.+|+.|+..+|.+|+.|. ..++..-|.|..|.......
T Consensus 178 ~~~~~~~~~---~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~~~~~ 228 (696)
T KOG0383|consen 178 AEIGVTRDK---GKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGATDYL 228 (696)
T ss_pred ccccccccC---ccccccccchhhhhheeccccccccchhhhhhcccccceeeE
Confidence 345556554 356788889999999999987 56778889999997765443
No 136
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=3.7 Score=44.23 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCcEe-ccCCCccCHhHHHHHHHh-----cCCCCCC
Q 005857 5 HSRSCGICLMDEGKSIRGQI-DSCDHYFCFVCIMEWAKI-----ESKCPMC 49 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~L-d~CgH~FC~~CI~eWsk~-----k~sCPlC 49 (673)
.-+.|.+|.|.++++-...+ ..=.|.|||-|-++-.|. ..+||.=
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 34789999999976433222 223899999998876654 3567753
No 137
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.79 E-value=6.2 Score=42.63 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=34.7
Q ss_pred cccccccccc--cCCCcEeccCCCccCHhHHHHHH-HhcCCCCCCccccc
Q 005857 8 SCGICLMDEG--KSIRGQIDSCDHYFCFVCIMEWA-KIESKCPMCKRRFT 54 (673)
Q Consensus 8 ~CpICLE~f~--~~~~~~Ld~CgH~FC~~CI~eWs-k~k~sCPlCRkeFt 54 (673)
.||+|....- ......+.+|+|..|..|..... .....||.|.....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 6999987542 23445677899999999997754 55678999976543
No 138
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.73 E-value=4.3 Score=49.11 Aligned_cols=42 Identities=24% Similarity=0.488 Sum_probs=31.8
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRF 53 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeF 53 (673)
-.|.+|--.++ ...+--.|+|.||..|+. +....||.|+.+.
T Consensus 841 skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 47999988773 223444599999999998 4456799998743
No 139
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=58.59 E-value=20 Score=40.25 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=29.9
Q ss_pred ccccccccCC----CCc------cccccccccccccccccccCCCCCCCCCccCcCCCCcc
Q 005857 96 YVRCNVCQGT----TYE------SLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 96 ~~~CsVC~~~----d~e------e~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~ 146 (673)
...|.+|.+. +.+ +...-=-.|+..+|..||. ++-+..--||.|+.+.
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLk---nW~ERqQTCPICr~p~ 344 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLK---NWLERQQTCPICRRPV 344 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHH---HHHHhccCCCcccCcc
Confidence 3679999876 100 0000112677779999997 3334445699999873
No 140
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=56.15 E-value=3.4 Score=44.24 Aligned_cols=50 Identities=26% Similarity=0.655 Sum_probs=39.0
Q ss_pred ccccccccCCC-------CccccccccccccccccccccCC----CCCCCCCccCcCCCCc
Q 005857 96 YVRCNVCQGTT-------YESLLLLCDLCDTASHTYCVGMG----NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 96 ~~~CsVC~~~d-------~ee~LL~CD~Cd~afH~~CL~pp----~~VP~gdW~Cp~Cr~~ 145 (673)
..+|++|.... -++.++-|..|++.-|..||+.. ..|-...|.|..|..-
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~c 284 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYC 284 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeeccee
Confidence 46799997553 24568999999999999999954 3455788999998653
No 141
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=55.88 E-value=5.2 Score=37.00 Aligned_cols=48 Identities=19% Similarity=0.515 Sum_probs=31.8
Q ss_pred ccccccccCCCCccccccc------ccc---ccccccccccCC------CCCCCCCccCcCCCC
Q 005857 96 YVRCNVCQGTTYESLLLLC------DLC---DTASHTYCVGMG------NAVPEGDWFCHDCTV 144 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~LL~C------D~C---d~afH~~CL~pp------~~VP~gdW~Cp~Cr~ 144 (673)
...|..|.....+. .+.| ..| ...|+..||.-. +-+...+|.||.|+.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 35677777654433 3455 566 778888898632 223467899999976
No 142
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=54.75 E-value=7.1 Score=48.67 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=62.3
Q ss_pred CCCccccccccccccc--CCCcEeccCCCccCHhHHHH--HHHhcCCCCCCccccccc----cCCCCCCCCC---cceee
Q 005857 3 GLHSRSCGICLMDEGK--SIRGQIDSCDHYFCFVCIME--WAKIESKCPMCKRRFTSI----RRPPKDGVFP---RERFV 71 (673)
Q Consensus 3 ~~Ed~~CpICLE~f~~--~~~~~Ld~CgH~FC~~CI~e--Wsk~k~sCPlCRkeFt~I----~~~~vdG~f~---nErLv 71 (673)
.+++..|-||++.-.. ..+..++.|+-..|..|... -.+..|.|-.|-..-... ......|.|- ..++.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~ 295 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWA 295 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCcee
Confidence 3567899999997643 34566777877777777651 113345566664321111 1122333331 22222
Q ss_pred eeccc---cccc-------ccccccccCCCCcccccccccccCCCCcccccccc--ccccccccccccC
Q 005857 72 VVPKR---DQIY-------GGFGIASSRTADPYAYVRCNVCQGTTYESLLLLCD--LCDTASHTYCVGM 128 (673)
Q Consensus 72 ~VpeR---dQvy-------epseEEs~~eeDp~e~~~CsVC~~~d~ee~LL~CD--~Cd~afH~~CL~p 128 (673)
.+--. ..++ ++.......... .-...|.+|...+ .+..+-|. .|-.+||.+|-.-
T Consensus 296 Hv~caiwipev~F~nt~~~E~I~~i~~i~~a-RwkL~cy~cK~~~-~gaciqcs~~~c~~a~hvtca~~ 362 (1051)
T KOG0955|consen 296 HVVCAIWIPEVSFANTVFLEPIDSIENIPPA-RWKLTCYICKQKG-LGACIQCSKANCYTAFHVTCARR 362 (1051)
T ss_pred eeehhhcccccccccchhhccccchhcCcHh-hhhceeeeeccCC-CCcceecchhhhhhhhhhhhHhh
Confidence 21100 0011 000000000000 0125699998765 34567774 8889999999863
No 143
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=53.37 E-value=0.9 Score=34.72 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=26.2
Q ss_pred ccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCC
Q 005857 98 RCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCT 143 (673)
Q Consensus 98 ~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr 143 (673)
.|.+|.+.-..+..+.--.|+..||..|+..-. .....||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~---~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWL---KRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHH---HHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHH---HhCCcCCccC
Confidence 488888764322333344599999999997420 1123788885
No 144
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.75 E-value=13 Score=46.35 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCcccccccccccccC----CCcEeccCCCccCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKS----IRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~----~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
.....|-||-+.+.-+ ....+.-|+---|..|.+- ..+....||.|+.+|....
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 3456999999987422 3356777999999999953 3455678999999998666
No 145
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=52.37 E-value=4.5 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=12.6
Q ss_pred ccccccCCCCccccccccccccccccccc
Q 005857 98 RCNVCQGTTYESLLLLCDLCDTASHTYCV 126 (673)
Q Consensus 98 ~CsVC~~~d~ee~LL~CD~Cd~afH~~CL 126 (673)
.|.+|+..........|..|+-.+|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899887665578889999999998873
No 146
>PLN02189 cellulose synthase
Probab=51.56 E-value=11 Score=46.99 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=39.5
Q ss_pred Cccccccccccccc----CCCcEeccCCCccCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGK----SIRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~----~~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
....|.||.+.+.- .....+.-|+--.|..|.+- ..+....||.|+.+|....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34589999998742 23345677999999999953 3345678999999998655
No 147
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.47 E-value=11 Score=42.17 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=38.8
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHh---cCCCCCCccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI---ESKCPMCKRR 52 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~---k~sCPlCRke 52 (673)
..|||=.+.-.+.+.+.-+.|||..+.+=|.+-+++ ...||.|-.+
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 479998888777788999999999999999998865 3679999654
No 148
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=51.42 E-value=6.2 Score=35.54 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=29.5
Q ss_pred ccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCCc
Q 005857 98 RCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVL 145 (673)
Q Consensus 98 ~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~ 145 (673)
.|..|...++.--+++ ..|...||..|+.--.+-....-.||.||..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCCccCCCCCCceee-ccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 3555655544433443 3599999999997321112345699999975
No 149
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=50.80 E-value=3.3 Score=45.36 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=30.3
Q ss_pred cccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCC
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTV 144 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~ 144 (673)
..|-.|.+.-.......|..|...||.+|-..- -+.--.||.|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~i---HesLh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFI---HESLHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHH---HhhhhcCCCcCC
Confidence 458899554444456778888888888887632 133468999974
No 150
>PLN02436 cellulose synthase A
Probab=49.87 E-value=12 Score=46.80 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=38.9
Q ss_pred ccccccccccccc----CCCcEeccCCCccCHhHHHHH-HHhcCCCCCCcccccccc
Q 005857 6 SRSCGICLMDEGK----SIRGQIDSCDHYFCFVCIMEW-AKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 6 d~~CpICLE~f~~----~~~~~Ld~CgH~FC~~CI~eW-sk~k~sCPlCRkeFt~I~ 57 (673)
...|.||-+.+.- .....+.-|+--.|..|.+-- .+....||.|+++|....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 4589999998742 233556779999999999532 344678999999988655
No 151
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=6.9 Score=46.26 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=30.9
Q ss_pred Ccccccccccccc-cCCCcEeccCCCccCHhHHHHHHHhcCCCC
Q 005857 5 HSRSCGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKIESKCP 47 (673)
Q Consensus 5 Ed~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCP 47 (673)
+-+.|+||+..|- ....++-+.|+|+.|..|++.-.. ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 3468999988774 334467778999999999987543 5688
No 152
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=46.51 E-value=12 Score=31.98 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=19.0
Q ss_pred cccccccCCC---Ccccccccc--ccccccccccccC------C--CCCCCCCccCcCCCCc
Q 005857 97 VRCNVCQGTT---YESLLLLCD--LCDTASHTYCVGM------G--NAVPEGDWFCHDCTVL 145 (673)
Q Consensus 97 ~~CsVC~~~d---~ee~LL~CD--~Cd~afH~~CL~p------p--~~VP~gdW~Cp~Cr~~ 145 (673)
..|.+|.... .+...+.|+ .|...||..||.- . ...-.-.+.||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 4688997642 223468897 9999999999972 1 1111234679999864
No 153
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.03 E-value=9.5 Score=46.55 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.1
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHH
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWA 40 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWs 40 (673)
-++.|.||...+...+ -.+-+|+|.||..||.+..
T Consensus 816 p~d~C~~C~~~ll~~p-F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKP-FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcCc-ceeeeccchHHHHHHHHHH
Confidence 3578999999885433 4556899999999998753
No 154
>PLN02400 cellulose synthase
Probab=44.40 E-value=18 Score=45.34 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=39.9
Q ss_pred CcccccccccccccC----CCcEeccCCCccCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 5 HSRSCGICLMDEGKS----IRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 5 Ed~~CpICLE~f~~~----~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
....|-||-+.+.-+ ....+.-|+---|..|.+= ..+....||.||.+|....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 345899999987422 3356777999999999942 3345678999999998765
No 155
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=44.19 E-value=11 Score=30.88 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=23.6
Q ss_pred ccccccccccC-------CCcEeccCCCccCHhHHHHHHHhcCCCCCCc
Q 005857 9 CGICLMDEGKS-------IRGQIDSCDHYFCFVCIMEWAKIESKCPMCK 50 (673)
Q Consensus 9 CpICLE~f~~~-------~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCR 50 (673)
|--|+..|... .+.....|.+.||.+|=.=-.+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 66677777542 3456778999999999654445556799883
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.99 E-value=6.5 Score=34.95 Aligned_cols=53 Identities=19% Similarity=0.469 Sum_probs=24.7
Q ss_pred cccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccccC
Q 005857 95 AYVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRDEH 149 (673)
Q Consensus 95 e~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~e~ 149 (673)
+...|.+|++. .+.+..+.|..|....+..|+... .-+|.-.|++|......+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE--rkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE--RKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH--HHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH--hhcCcccccccCCCcccc
Confidence 34679999875 345678899999999999999853 336788999999766544
No 157
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=12 Score=42.18 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=28.6
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHh
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI 42 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~ 42 (673)
...|.||.+.+.. ......|+|.||..|+....+.
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 4789999998743 4566689999999999988755
No 158
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.89 E-value=21 Score=42.62 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=36.6
Q ss_pred ccccccCCCCcccccccccccccc-ccccccCCCCCCCCCccCcCCCCcccc
Q 005857 98 RCNVCQGTTYESLLLLCDLCDTAS-HTYCVGMGNAVPEGDWFCHDCTVLRDE 148 (673)
Q Consensus 98 ~CsVC~~~d~ee~LL~CD~Cd~af-H~~CL~pp~~VP~gdW~Cp~Cr~~~~e 148 (673)
.|..|+..-. ....||..|+... +..|-.....+|.+.-||+.|-.....
T Consensus 3 ~Cp~Cg~~n~-~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 3 ICPQCQFENP-NNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred cCCCCCCcCC-CCCccccccCCCCCCCcCCCCCCCCCcccccccccCCcccc
Confidence 5888876533 3457899998853 356777666788999999999876544
No 159
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=41.85 E-value=7.5 Score=33.34 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=17.8
Q ss_pred cccccccccccccCCCCCCCCCccCcCCC
Q 005857 115 DLCDTASHTYCVGMGNAVPEGDWFCHDCT 143 (673)
Q Consensus 115 D~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr 143 (673)
..|+..||..|+.. +-.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~~---Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQ---WLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHH---HHTTSSB-TTSS
T ss_pred cccCCCEEHHHHHH---HHhcCCcCCCCC
Confidence 47999999999972 112334799886
No 160
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.32 E-value=23 Score=33.54 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=34.7
Q ss_pred cccccccccccccC-----------CCcEeccCCCccCHhHHHHHHHhcCCCCCCc
Q 005857 6 SRSCGICLMDEGKS-----------IRGQIDSCDHYFCFVCIMEWAKIESKCPMCK 50 (673)
Q Consensus 6 d~~CpICLE~f~~~-----------~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCR 50 (673)
+..|--|+..|... .+.....|.+.||.+|=.=+.+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45699999988431 1234678999999999888888878899995
No 161
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.69 E-value=23 Score=29.45 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.8
Q ss_pred CCcccccccccccc-cCCCcEeccCCCccCHhHHHH
Q 005857 4 LHSRSCGICLMDEG-KSIRGQIDSCDHYFCFVCIME 38 (673)
Q Consensus 4 ~Ed~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~e 38 (673)
.+...|++|-+.|. ..++.+..-|+-.||+.|..+
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34578999999995 446677778999999999865
No 162
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=38.58 E-value=26 Score=39.76 Aligned_cols=54 Identities=28% Similarity=0.576 Sum_probs=41.3
Q ss_pred cccccccccCCCC-ccccccccccccccccccccCCCCCCCCCccCcCCCCccccC
Q 005857 95 AYVRCNVCQGTTY-ESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRDEH 149 (673)
Q Consensus 95 e~~~CsVC~~~d~-ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~e~ 149 (673)
....| .|+..+. ++.++-|+.|+.|-|.+|++....-+.....|..|....-..
T Consensus 85 ~~~~c-~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~ 139 (508)
T KOG1844|consen 85 EISRC-DCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEV 139 (508)
T ss_pred ccccc-ccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeeccccccc
Confidence 34567 6888777 889999999999999999997622223568899998765443
No 163
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=37.96 E-value=12 Score=39.10 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=37.7
Q ss_pred cccccccccccccCC-CcEeccC-----CCccCHhHHHHHHH--hcCCCCCCcccccccc
Q 005857 6 SRSCGICLMDEGKSI-RGQIDSC-----DHYFCFVCIMEWAK--IESKCPMCKRRFTSIR 57 (673)
Q Consensus 6 d~~CpICLE~f~~~~-~~~Ld~C-----gH~FC~~CI~eWsk--~k~sCPlCRkeFt~I~ 57 (673)
+..|-||.+...... .....+| .++.|..|++.|.. ....|..|...+....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~ 137 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG 137 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence 367999999764321 1455566 45679999999986 5678999988776554
No 164
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=35.39 E-value=27 Score=43.68 Aligned_cols=54 Identities=19% Similarity=0.451 Sum_probs=40.0
Q ss_pred CCcccccccccccccC----CCcEeccCCCccCHhHHHH-HHHhcCCCCCCcccccccc
Q 005857 4 LHSRSCGICLMDEGKS----IRGQIDSCDHYFCFVCIME-WAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~----~~~~Ld~CgH~FC~~CI~e-Wsk~k~sCPlCRkeFt~I~ 57 (673)
.....|-||-+.+.-. ....+.-|+--.|..|.+- ..+....||.|+.+|....
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 4557899999987422 3356777999999999953 2344678999999988654
No 165
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=34.26 E-value=13 Score=47.86 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=40.1
Q ss_pred CcccccccccccccCCCcEeccCCCccCHhHHHHHHHh----cCCCCCCcccc
Q 005857 5 HSRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKI----ESKCPMCKRRF 53 (673)
Q Consensus 5 Ed~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~----k~sCPlCRkeF 53 (673)
....|.||+..........++.|.-.||..|+++-... .|.||-|+..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34679999998876566778889999999999887643 68999999864
No 166
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=33.79 E-value=29 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.523 Sum_probs=30.4
Q ss_pred cccccccCCC-----CccccccccccccccccccccCCCCCCCCCccCcCCCCc
Q 005857 97 VRCNVCQGTT-----YESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVL 145 (673)
Q Consensus 97 ~~CsVC~~~d-----~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~ 145 (673)
..|.+|...+ ..+....|..|...||..|... -.||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------CCCCCcHhH
Confidence 5677887653 2235788999999999999972 239999643
No 167
>PLN02400 cellulose synthase
Probab=33.47 E-value=34 Score=43.09 Aligned_cols=51 Identities=16% Similarity=0.430 Sum_probs=40.5
Q ss_pred cccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 95 AYVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 95 e~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
+...|.+|++. .+.+..+-|..|.-..|..|+.- +.-+|.-.||+|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhhe--ecccCCccCcccCCccc
Confidence 44689999876 24557889999999999999974 34478899999977554
No 168
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.24 E-value=45 Score=30.87 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=19.0
Q ss_pred CCccCHhHHHHHHH---------hcCCCCCCcc
Q 005857 28 DHYFCFVCIMEWAK---------IESKCPMCKR 51 (673)
Q Consensus 28 gH~FC~~CI~eWsk---------~k~sCPlCRk 51 (673)
.-.||..||..+.. .++.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 78899999987652 2478999986
No 169
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=32.49 E-value=9.7 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.818 Sum_probs=22.8
Q ss_pred ccccccccccccccccccCCCCCCCCCccCcCCC
Q 005857 110 LLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCT 143 (673)
Q Consensus 110 ~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr 143 (673)
.|+.|..|+...|..|++|. -+|..|.
T Consensus 42 AMi~Cq~CGAFCHDDCIgps-------kLCvsCl 68 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPS-------KLCVSCL 68 (69)
T ss_pred HHHHHhhccchhccccccHH-------HHhHhhc
Confidence 79999999999999999986 4566663
No 170
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=32.01 E-value=44 Score=34.39 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred cccccccccCCCCccccccccccccccccccccCC--C------CC-----CCCCccCcCCCCcccc
Q 005857 95 AYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMG--N------AV-----PEGDWFCHDCTVLRDE 148 (673)
Q Consensus 95 e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp--~------~V-----P~gdW~Cp~Cr~~~~e 148 (673)
....|.+|.+.-....+ -.|+..||..|+..- . .+ ......||.|+..-..
T Consensus 17 ~~~~CpICld~~~dPVv---T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV---TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcEE---cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34679999876443322 468889999998521 0 00 1234689999986543
No 171
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.89 E-value=6.9 Score=38.13 Aligned_cols=49 Identities=27% Similarity=0.649 Sum_probs=29.9
Q ss_pred CCcccccccccccccCCCcEeccCCCc-------cCHhHHHHHH----HhcCCCCCCccccccccC
Q 005857 4 LHSRSCGICLMDEGKSIRGQIDSCDHY-------FCFVCIMEWA----KIESKCPMCKRRFTSIRR 58 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~Ld~CgH~-------FC~~CI~eWs----k~k~sCPlCRkeFt~I~~ 58 (673)
+++.+|.||+..- .-+.|+|. ||..|=-.-. +..+.|-+|++....+.+
T Consensus 63 ~ddatC~IC~KTK------FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~k 122 (169)
T KOG3799|consen 63 GDDATCGICHKTK------FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTK 122 (169)
T ss_pred CcCcchhhhhhcc------cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHh
Confidence 4567999999742 33456664 4444432211 223679999888766663
No 172
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.56 E-value=13 Score=40.71 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=33.1
Q ss_pred cccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCCc
Q 005857 97 VRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVL 145 (673)
Q Consensus 97 ~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~ 145 (673)
+.|.+|...--....+.--.|+..||..|++- .+-...-.||.|+..
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~k--W~~~y~~~CPvCrt~ 370 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDK--WLLGYSNKCPVCRTA 370 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHH--HHhhhcccCCccCCC
Confidence 67999987654334455678999999999971 122234569999864
No 173
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=31.53 E-value=30 Score=38.17 Aligned_cols=49 Identities=22% Similarity=0.573 Sum_probs=38.4
Q ss_pred ccccccccccc-cCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 7 RSCGICLMDEG-KSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 7 ~~CpICLE~f~-~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
..|+||.+... .+...++-+|++..|+.|...-.....+||.||+.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 57999999773 23335666789999999998888888899999966543
No 174
>PLN02195 cellulose synthase A
Probab=30.99 E-value=40 Score=41.99 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=36.9
Q ss_pred cccccccccccccC----CCcEeccCCCccCHhHHHHH-HHhcCCCCCCccccc
Q 005857 6 SRSCGICLMDEGKS----IRGQIDSCDHYFCFVCIMEW-AKIESKCPMCKRRFT 54 (673)
Q Consensus 6 d~~CpICLE~f~~~----~~~~Ld~CgH~FC~~CI~eW-sk~k~sCPlCRkeFt 54 (673)
...|-||-+.+.-+ ....+.-|+---|..|.+-- .+....||.|+.+|.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 46899999977422 23467779999999999532 244678999999988
No 175
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.64 E-value=36 Score=41.26 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.6
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCC--Cccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPM--CKRR 52 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPl--CRke 52 (673)
...|.+|-..+. +....+..|+|.-|..|++.|......||. |...
T Consensus 779 ~~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 779 SAKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred hcCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 357999998874 345677789999999999999988877876 6443
No 176
>PLN02189 cellulose synthase
Probab=30.52 E-value=35 Score=42.73 Aligned_cols=51 Identities=20% Similarity=0.439 Sum_probs=40.6
Q ss_pred cccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 95 AYVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 95 e~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
....|.+|++. .+.+..+-|..|.-..|..|+.- +.-+|.-.||+|.....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCchh
Confidence 34589999886 34557888999999999999964 34578899999987654
No 177
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=20 Score=38.88 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=33.1
Q ss_pred cccccccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCCCcc
Q 005857 93 PYAYVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLR 146 (673)
Q Consensus 93 p~e~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~ 146 (673)
+.+...|.+|.+... ..-|-.|+..||++|+--- -...--||.|+..-
T Consensus 236 ~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w---~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 236 PEATRKCSLCLENRS---NPSATPCGHIFCWSCILEW---CSEKAECPLCREKF 283 (293)
T ss_pred CCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHH---HccccCCCcccccC
Confidence 345578999987642 3568889999999999632 12222399999753
No 178
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.47 E-value=36 Score=42.84 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=40.1
Q ss_pred cccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 95 AYVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 95 e~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
+...|.+|++. .+.+..+-|..|+-..|..|+.- +.-+|.-.||+|.....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCchh
Confidence 34689999876 24457888999999999999974 34578899999977544
No 179
>PLN02436 cellulose synthase A
Probab=28.13 E-value=42 Score=42.22 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=40.3
Q ss_pred cccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 95 AYVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 95 e~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
....|.+|++. .+.+..+-|..|+-..|..|+.- +.-+|.-.||+|.....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY--ERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh--hhhcCCccCcccCCchh
Confidence 34689999875 24456888999999999999964 34578899999987654
No 180
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.87 E-value=5.9 Score=34.49 Aligned_cols=44 Identities=25% Similarity=0.644 Sum_probs=23.8
Q ss_pred cccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 6 SRSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 6 d~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
+..||.|...+.. .. ++++|..|-... .....||.|.+++..+.
T Consensus 1 e~~CP~C~~~L~~-----~~--~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 1 ENTCPKCQQELEW-----QG--GHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp --B-SSS-SBEEE-----ET--TEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CCcCCCCCCccEE-----eC--CEEECccccccc-eecccCCCcccHHHHHH
Confidence 3689999997732 21 788888887642 22457999998866554
No 181
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=27.37 E-value=44 Score=26.91 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=8.1
Q ss_pred CCccCcCCCCccc
Q 005857 135 GDWFCHDCTVLRD 147 (673)
Q Consensus 135 gdW~Cp~Cr~~~~ 147 (673)
.+|.||.|...+.
T Consensus 33 ~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 33 DDWVCPVCGAPKS 45 (47)
T ss_dssp TT-B-TTTSSBGG
T ss_pred CCCcCcCCCCccc
Confidence 4699999987653
No 182
>PLN02195 cellulose synthase A
Probab=27.30 E-value=40 Score=42.01 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=39.8
Q ss_pred cccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 97 VRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 97 ~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
..|.+|++. .+.+..+-|..|+-..|..|+.- +.-+|.--||+|.....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey--er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY--EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhh--hhhcCCccCCccCCccc
Confidence 579999874 23456788999999999999974 34578999999998776
No 183
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=26 Score=39.74 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=21.8
Q ss_pred cEeccCCCccCHhHHHHHHHhcCCCCCCcc
Q 005857 22 GQIDSCDHYFCFVCIMEWAKIESKCPMCKR 51 (673)
Q Consensus 22 ~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRk 51 (673)
.+.-.|+|.||+.|..+|.... .|+....
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~p~-~C~~~~~ 207 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHSPV-SCPGAKK 207 (444)
T ss_pred ceeCCCCchhHhhccccccCCC-cccchHH
Confidence 4555699999999999997654 6776643
No 184
>PF14692 DUF4462: Domain of unknown function (DUF4462)
Probab=27.02 E-value=20 Score=26.15 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=12.5
Q ss_pred HHhhHHh-hcCCccccc
Q 005857 324 RENWSAL-QNNSLRFSS 339 (673)
Q Consensus 324 r~nw~al-r~gs~~f~~ 339 (673)
|.||+.| |+|+++.+.
T Consensus 5 r~~WN~LpRag~vGigc 21 (28)
T PF14692_consen 5 RFNWNWLPRAGSVGIGC 21 (28)
T ss_pred ccccccCcccccccccc
Confidence 6789988 788887754
No 185
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.42 E-value=8.7 Score=43.07 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=38.6
Q ss_pred cccccccccccC-CCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccccc
Q 005857 8 SCGICLMDEGKS-IRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTSIR 57 (673)
Q Consensus 8 ~CpICLE~f~~~-~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~I~ 57 (673)
.|.||.+.+... ....-..|+|.++..||.+|+.....||.|+.++..+.
T Consensus 198 sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 198 SLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 588998877431 22333469999999999999988889999998765544
No 186
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.98 E-value=29 Score=31.29 Aligned_cols=31 Identities=26% Similarity=0.688 Sum_probs=25.4
Q ss_pred ccccccccCCCCccccccccc--cccccccccccC
Q 005857 96 YVRCNVCQGTTYESLLLLCDL--CDTASHTYCVGM 128 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~LL~CD~--Cd~afH~~CL~p 128 (673)
...|.+|+.. .+..+-|.. |..+||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 3679999886 357888986 999999999864
No 187
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.74 E-value=36 Score=34.96 Aligned_cols=15 Identities=27% Similarity=0.953 Sum_probs=12.5
Q ss_pred cCCCCCCcccccccc
Q 005857 43 ESKCPMCKRRFTSIR 57 (673)
Q Consensus 43 k~sCPlCRkeFt~I~ 57 (673)
+..||+|.+.|..-.
T Consensus 5 ~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 5 KITCPVCGKEFKTKK 19 (214)
T ss_pred ceECCCCCCeeeeeE
Confidence 467999999998765
No 188
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.43 E-value=24 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=16.4
Q ss_pred CCCCccccccccccccc-CCCcEeccCCCccCHhHHH
Q 005857 2 EGLHSRSCGICLMDEGK-SIRGQIDSCDHYFCFVCIM 37 (673)
Q Consensus 2 e~~Ed~~CpICLE~f~~-~~~~~Ld~CgH~FC~~CI~ 37 (673)
+..+...|.+|...|.- ..+--.-.||+.||..|..
T Consensus 5 ~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 34556789999999842 1222345588888877763
No 190
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=24.22 E-value=42 Score=35.16 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=37.2
Q ss_pred ccccccccccccCCCcEeccCCCccCHhHHHHHHHhcCCCCCCcccccc
Q 005857 7 RSCGICLMDEGKSIRGQIDSCDHYFCFVCIMEWAKIESKCPMCKRRFTS 55 (673)
Q Consensus 7 ~~CpICLE~f~~~~~~~Ld~CgH~FC~~CI~eWsk~k~sCPlCRkeFt~ 55 (673)
.+|-+|....-.+ ..+-.|+=.|+..|+.+.......||.|..-|..
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 4799999876432 3466799999999999999888899999765544
No 191
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.04 E-value=62 Score=26.39 Aligned_cols=15 Identities=40% Similarity=1.156 Sum_probs=11.0
Q ss_pred CCCCCccCcCCCCccc
Q 005857 132 VPEGDWFCHDCTVLRD 147 (673)
Q Consensus 132 VP~gdW~Cp~Cr~~~~ 147 (673)
+|+ +|.||.|...+.
T Consensus 31 Lp~-~w~CP~C~a~K~ 45 (50)
T cd00730 31 LPD-DWVCPVCGAGKD 45 (50)
T ss_pred CCC-CCCCCCCCCcHH
Confidence 443 799999987653
No 192
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.95 E-value=52 Score=41.36 Aligned_cols=50 Identities=20% Similarity=0.487 Sum_probs=39.8
Q ss_pred ccccccccCC----CCccccccccccccccccccccCCCCCCCCCccCcCCCCccc
Q 005857 96 YVRCNVCQGT----TYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVLRD 147 (673)
Q Consensus 96 ~~~CsVC~~~----d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~~~ 147 (673)
...|.+|++. .+.+..+-|..|.-..|..|+.- +.-+|.-.||+|.....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhh--hhhcCCccCCccCCchh
Confidence 4679999876 23456788999999999999964 34578899999987654
No 193
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=23.94 E-value=12 Score=31.00 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=31.9
Q ss_pred ccccccccCCCCccccccccccccccccccccCCCCCCCCCccCcCCC
Q 005857 96 YVRCNVCQGTTYESLLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCT 143 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr 143 (673)
...|+.|.....-..+-.|..|+++.+..|... .-..|..|.
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~d------eYY~CksC~ 48 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCWQD------EYYTCKSCN 48 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhhhh------hHhHHHhhh
Confidence 357999999887777888999999999888862 224566664
No 194
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=23.71 E-value=44 Score=36.98 Aligned_cols=39 Identities=36% Similarity=0.717 Sum_probs=32.0
Q ss_pred cccccccccccccccc--ccCC--CCCCCCCccCcCCCCcccc
Q 005857 110 LLLLCDLCDTASHTYC--VGMG--NAVPEGDWFCHDCTVLRDE 148 (673)
Q Consensus 110 ~LL~CD~Cd~afH~~C--L~pp--~~VP~gdW~Cp~Cr~~~~e 148 (673)
.+.-|+.|..+||..| ++++ ...+...|+|..|....+.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhhh
Confidence 6789999999999999 8887 3455667999999876644
No 195
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.32 E-value=23 Score=37.42 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=35.9
Q ss_pred ccccccccccccc---CCCcEecc--------CCCccCHhHHHHHHHh-cCCCCCCccc
Q 005857 6 SRSCGICLMDEGK---SIRGQIDS--------CDHYFCFVCIMEWAKI-ESKCPMCKRR 52 (673)
Q Consensus 6 d~~CpICLE~f~~---~~~~~Ld~--------CgH~FC~~CI~eWsk~-k~sCPlCRke 52 (673)
...|.||...+.. ...+.++. |+|..|..|+..-+.. ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3679999999862 23455666 9999999999987644 3689999875
No 196
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.27 E-value=57 Score=39.74 Aligned_cols=27 Identities=30% Similarity=0.700 Sum_probs=22.8
Q ss_pred cEeccCCCccCHhHHHHHHHhcCCCCC
Q 005857 22 GQIDSCDHYFCFVCIMEWAKIESKCPM 48 (673)
Q Consensus 22 ~~Ld~CgH~FC~~CI~eWsk~k~sCPl 48 (673)
-.+..|+|..|..|.++|.+..-.||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 345669999999999999998778875
No 197
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.77 E-value=22 Score=28.49 Aligned_cols=20 Identities=30% Similarity=0.868 Sum_probs=15.7
Q ss_pred cEeccCCCccCHhHHHHHHH
Q 005857 22 GQIDSCDHYFCFVCIMEWAK 41 (673)
Q Consensus 22 ~~Ld~CgH~FC~~CI~eWsk 41 (673)
.....|++.||+.|..+|..
T Consensus 41 v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred eECCCCCCeECCCCCCcCCC
Confidence 44446899999999988854
No 198
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.69 E-value=52 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=9.1
Q ss_pred ccCHhHHHHHHHh
Q 005857 30 YFCFVCIMEWAKI 42 (673)
Q Consensus 30 ~FC~~CI~eWsk~ 42 (673)
.||+.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999743
No 199
>TIGR00043 metalloprotein, YbeY/UPF0054 family. This minimally protein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrates metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and somewhat more weakly to be a metalloproteinase.
Probab=21.48 E-value=77 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHHhhHHHHHhcCCCCCCCc
Q 005857 588 RLEYDAFKKVAKLATHTILASCGLEHPKSG 617 (673)
Q Consensus 588 ~~g~~~fk~var~athtilaacgleh~~s~ 617 (673)
++|.+-..|+++..+|-||=-+|..|...+
T Consensus 64 ~~~~~~~~e~~~l~iHG~LHLlGyDH~~~~ 93 (110)
T TIGR00043 64 EYGHSLERELAHLTVHGLLHLLGYDHETED 93 (110)
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 577778899999999999999999997654
No 200
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=21.35 E-value=45 Score=38.54 Aligned_cols=32 Identities=22% Similarity=0.719 Sum_probs=17.3
Q ss_pred ccccccccccccccccccCCCCCCCCCccCcCCCCc
Q 005857 110 LLLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVL 145 (673)
Q Consensus 110 ~LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~ 145 (673)
.++||..|...-|.+|+... | .-||||.|...
T Consensus 4 ~L~fC~~C~~irc~~c~~~E--i--~~~yCp~CL~~ 35 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEE--I--DSYYCPNCLFE 35 (483)
T ss_pred cceecccccccCChhhcccc--c--ceeECcccccc
Confidence 35566666665666666421 1 23666666543
No 201
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=52 Score=39.57 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=34.7
Q ss_pred cccccccccccCCCcEeccCCC-ccCHhHHHHHHH--h----cCCCCCCccccccccC
Q 005857 8 SCGICLMDEGKSIRGQIDSCDH-YFCFVCIMEWAK--I----ESKCPMCKRRFTSIRR 58 (673)
Q Consensus 8 ~CpICLE~f~~~~~~~Ld~CgH-~FC~~CI~eWsk--~----k~sCPlCRkeFt~I~~ 58 (673)
-|.||-.-. .....-.|+| .-|..|...... + .+.||+|+..+.....
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 599998855 3355667999 899999876542 2 3568999987766553
No 202
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.33 E-value=35 Score=37.97 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=27.7
Q ss_pred CCcccccccccccccCCCcEe--ccCCCcc--------CHhHHHHHH----Hh-cCCCCCCcc
Q 005857 4 LHSRSCGICLMDEGKSIRGQI--DSCDHYF--------CFVCIMEWA----KI-ESKCPMCKR 51 (673)
Q Consensus 4 ~Ed~~CpICLE~f~~~~~~~L--d~CgH~F--------C~~CI~eWs----k~-k~sCPlCRk 51 (673)
..+..||+|-+.....-.+++ .+|.-.| .+.|+.+-. +. ..+||.||-
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 345789999998754333443 4454443 344554321 11 357999985
No 203
>PHA02929 N1R/p28-like protein; Provisional
Probab=20.13 E-value=41 Score=35.53 Aligned_cols=47 Identities=15% Similarity=0.388 Sum_probs=29.4
Q ss_pred ccccccccCCCCccc-----cccccccccccccccccCCCCCCCCCccCcCCCCc
Q 005857 96 YVRCNVCQGTTYESL-----LLLCDLCDTASHTYCVGMGNAVPEGDWFCHDCTVL 145 (673)
Q Consensus 96 ~~~CsVC~~~d~ee~-----LL~CD~Cd~afH~~CL~pp~~VP~gdW~Cp~Cr~~ 145 (673)
...|.+|.+.-.+.. ...=..|+..||..|+..- -...-.||.|+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~W---l~~~~tCPlCR~~ 225 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW---KKEKNTCPVCRTP 225 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHH---HhcCCCCCCCCCE
Confidence 367999987522111 1122478889999999642 1123469999975
Done!