Your job contains 1 sequence.
>005858
MKYKERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLL
GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGE
REQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQ
RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFK
DAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYA
SILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDI
LQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG
VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER
KLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSM
VEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRSWVEKF
KEASESSSNTIAESGRRRSPEDKQRKLEAARRKAEEKKLAKWEANGYQSLSVKTPVCSPG
GDMMSDSGSVQFV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005858
(673 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2054955 - symbol:ASG3 "ALTERED SEED GERMINATIO... 1113 3.8e-205 2
UNIPROTKB|Q86WJ1 - symbol:CHD1L "Chromodomain-helicase-DN... 790 1.4e-78 1
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 478 2.9e-78 2
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 786 3.8e-78 1
UNIPROTKB|Q3B7N1 - symbol:CHD1L "Chromodomain-helicase-DN... 785 4.8e-78 1
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 477 1.6e-77 2
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 471 1.6e-77 2
UNIPROTKB|F1SDB8 - symbol:CHD1L "Uncharacterized protein"... 778 2.7e-77 1
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 473 4.3e-77 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 473 4.3e-77 2
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 473 5.5e-77 2
UNIPROTKB|F1MFS2 - symbol:CHD1L "Chromodomain-helicase-DN... 774 7.1e-77 1
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 462 1.4e-76 2
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 469 2.4e-76 2
ZFIN|ZDB-GENE-040426-892 - symbol:chd1l "chromodomain hel... 769 2.4e-76 1
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 477 2.6e-76 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 477 2.6e-76 2
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 766 5.0e-76 1
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 490 6.3e-76 2
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 764 8.1e-76 1
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 465 8.4e-76 2
UNIPROTKB|F1Q2U2 - symbol:CHD1L "Uncharacterized protein"... 763 1.0e-75 1
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 473 1.1e-75 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 478 1.3e-75 2
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 730 3.4e-74 3
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 451 4.4e-73 2
POMBASE|SPAC29B12.01 - symbol:ino80 "SNF2 family helicase... 470 6.1e-73 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 743 1.7e-72 1
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 743 1.7e-72 1
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 744 2.6e-72 1
WB|WBGene00010369 - symbol:chd-1 species:6239 "Caenorhabd... 739 5.0e-72 1
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 457 5.5e-72 2
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 429 2.9e-71 2
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 429 3.7e-71 2
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 429 4.1e-71 2
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 429 7.8e-71 2
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 429 1.0e-70 2
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 429 1.0e-70 2
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 429 1.0e-70 2
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 416 1.1e-70 2
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 429 1.3e-70 2
FB|FBgn0250786 - symbol:Chd1 "Chromodomain-helicase-DNA-b... 728 1.4e-70 1
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 417 1.5e-70 2
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 417 1.9e-70 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 714 3.2e-70 1
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 423 4.8e-70 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 417 6.6e-70 2
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 416 8.0e-70 2
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 417 1.0e-69 2
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 417 1.1e-69 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 708 1.4e-69 1
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 426 1.7e-69 2
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 447 1.8e-69 2
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 416 2.6e-69 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 406 2.9e-69 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 417 2.9e-69 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 443 3.0e-69 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 424 3.1e-69 2
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 424 3.1e-69 2
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 445 3.3e-69 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 417 3.6e-69 2
UNIPROTKB|F1N166 - symbol:SMARCA1 "Uncharacterized protei... 413 3.6e-69 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 424 4.2e-69 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 416 4.6e-69 2
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 413 6.6e-69 3
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 413 6.6e-69 3
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 413 6.6e-69 3
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 413 6.6e-69 3
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 413 6.6e-69 3
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 415 6.7e-69 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 408 7.7e-69 2
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 398 2.4e-68 2
POMBASE|SPAC3G6.01 - symbol:hrp3 "ATP-dependent DNA helic... 392 5.1e-68 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 434 5.5e-68 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 406 5.9e-68 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 423 6.1e-68 2
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 424 6.6e-68 2
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 402 9.4e-68 2
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 419 1.6e-67 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 447 1.9e-67 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 424 3.5e-67 2
ASPGD|ASPL0000052010 - symbol:AN1255 species:162425 "Emer... 694 3.7e-67 1
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 416 1.2e-66 3
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 423 1.4e-66 2
CGD|CAL0001390 - symbol:orf19.3035 species:5476 "Candida ... 383 1.6e-66 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 423 1.8e-66 2
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 405 2.0e-66 2
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 681 2.2e-66 1
CGD|CAL0000801 - symbol:orf19.1720 species:5476 "Candida ... 449 2.3e-66 2
UNIPROTKB|Q5AJ72 - symbol:CaO19.1720 "Putative uncharacte... 449 2.3e-66 2
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 400 2.7e-66 2
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 400 2.7e-66 2
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 400 3.5e-66 2
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 686 3.9e-66 1
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 685 4.5e-66 1
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 410 4.7e-66 2
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 422 5.1e-66 2
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 684 5.7e-66 1
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 684 5.7e-66 1
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 684 6.2e-66 1
WARNING: Descriptions of 453 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 1113 (396.9 bits), Expect = 3.8e-205, Sum P(2) = 3.8e-205
Identities = 226/332 (68%), Positives = 265/332 (79%)
Query: 1 MKYKERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLL 60
M+Y+ RL+ AA+II + + + TP D +EFGVTA LKPHQVEG+SWLI++YLLGVNV+L
Sbjct: 15 MEYERRLEAAAEIILEKEAKFSNTPPDCSEFGVTATLKPHQVEGVSWLIQKYLLGVNVVL 74
Query: 61 G-DEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVG 119
D+MGLGKTLQAISFLSYLKF Q PGPFLVLCPLSVTDGWVSE+ +FTP LEVLRYVG
Sbjct: 75 ELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVG 134
Query: 120 EREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEA 179
++ R ++R++MY+HVK+ S+ LPFDVLLTTYD+ L+DQ FLSQIPW Y IIDEA
Sbjct: 135 DKYCRLDMRKSMYDHVKKSSKGHF---LPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEA 191
Query: 180 QRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
QRLKNP+SVLYNVL E FL+PRRLL+TGTPIQNNL+ELWALMHFCMP VFGTL+QFLS F
Sbjct: 192 QRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAF 251
Query: 240 KDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITV------ 293
K+ S KE + SLK IL AFMLRRTK L+E G+L+LPPLTE+TV
Sbjct: 252 KETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVS 311
Query: 294 LQKKVYASILRKELPKLLALSSRTANHQSLQN 325
LQKK+Y SILRKELP LL LSS +NH SLQN
Sbjct: 312 LQKKIYTSILRKELPGLLELSSGGSNHTSLQN 343
Score = 894 (319.8 bits), Expect = 3.8e-205, Sum P(2) = 3.8e-205
Identities = 197/350 (56%), Positives = 245/350 (70%)
Query: 327 ASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFA 386
ASG ++SGHRVLLF+QMT TLDILQDF+ELR+YSYERLDGS+RAEERFA
Sbjct: 375 ASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFA 434
Query: 387 AIRHFSVQSAIER-LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
AI++FS ++ ER L SE G++AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ
Sbjct: 435 AIKNFSAKT--ERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 492
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVE 505
ALQRAHRIGQ++HVLSINLVTEH+VEEVI+RRAERKL+LSHNVVGD++ E KE +
Sbjct: 493 ALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNM---EEKEE---D 546
Query: 506 TDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPV 565
DLRS++FGL FDP+ I+NEESD+L++ ++S+ EKV+A+R K R+FE+N
Sbjct: 547 GGDLRSLVFGLQRFDPEEIHNEESDNLKMVEISSLAEKVVAIRQNVEPDKEERRFEIN-- 604
Query: 566 ALLEESDLLMHESFASATSYPDLDEASYRSWVEKFKEASESSSNT-IAESGRRRS-PEDK 623
SD L+ + +SA+ +LDEASY SWVEK KEA+ SS + I E G R++ E++
Sbjct: 605 ----SSDTLLGNT-SSASLDSELDEASYLSWVEKLKEAARSSKDEKIIELGNRKNLSEER 659
Query: 624 QXXXXXXXXXXXXXXXXXXXXNGYQSLSVKTPVCSPXXXXXXXXXXVQFV 673
+GYQSLSV+ P+ V FV
Sbjct: 660 NLRIEAARKKAEEKKLATWGAHGYQSLSVEEPILPDDVDSSSDAGSVNFV 709
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 222/618 (35%), Positives = 317/618 (51%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D ++G+T L+ +Q+EG++WL +R+ +LGDEMGLGKT Q I+ YL
Sbjct: 35 DLRQWGLTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLND 94
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL+LCPLSV W EM +F P L + Y G++E+R +++ + K++S+
Sbjct: 95 EGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDL----KQESR----- 145
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL PW ++DEA RLKN SS+L+ L E F + LL+
Sbjct: 146 ---FHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSE-FSVVFSLLL 201
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263
TGTPIQN+L EL++L+ F P +F + F+ ++D S E + L
Sbjct: 202 TGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQDIEKES---------ESASELHK 252
Query: 264 ILSAFMLRRTKQKLV-ECGHLMLPPLTE-ITVLQKKVYASILRKELP----------KLL 311
+L F+LRR K ++ E + ++ LQKK Y +IL K+L KL
Sbjct: 253 LLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQ 312
Query: 312 ALSS---RTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQM 354
+ S + +H L + ASG Y+ GHRVLLF+QM
Sbjct: 313 NILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQM 372
Query: 355 TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414
TQ LDILQD+++ R YSYER+DGS+R EER AI++F G FVF++
Sbjct: 373 TQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-------------GQQPIFVFLL 419
Query: 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVI 474
STRAGGVG+NL AADTVIF + D+NPQ D QA RAHRIGQ V I L+ TVEE++
Sbjct: 420 STRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 479
Query: 475 MRRAERKLRLSHNVVGDDVVDREVKERTAVETD-DLRSII-FGLH-LFDPKAINNEESDD 531
R+A KL+L++ ++ ++ A + D L I+ FGL L + +E D
Sbjct: 480 YRKAASKLQLTNMIIEGGHFTLGA-QKPAADADLQLSEILKFGLDKLLASEGSTMDEIDL 538
Query: 532 LRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYPDLDEA 591
+ G + V G ++ N + L E D S S+ L
Sbjct: 539 ESILGETKDGQWVSDALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNL 598
Query: 592 SYRSWVEKFKEASESSSN 609
++ +EK + S N
Sbjct: 599 Q-KTLLEKASQEGRSLRN 615
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 478 (173.3 bits), Expect = 2.9e-78, Sum P(2) = 2.9e-78
Identities = 111/295 (37%), Positives = 169/295 (57%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 519 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 578
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ IRR Q + PF V++T+
Sbjct: 579 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLYT-QDAPFHVVITS 632
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 633 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 691
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 692 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 751
Query: 276 KLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + LT ++T QK +Y ++ K + L SS + Q+ QNT S
Sbjct: 752 DVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTS 805
Score = 355 (130.0 bits), Expect = 2.9e-78, Sum P(2) = 2.9e-78
Identities = 91/245 (37%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1101 TDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1160
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1161 DMVADFQTR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1208
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1209 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1268
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EES+ + R EK + +++ GK RK
Sbjct: 1269 SLLLDD-EELEKKLRLRQEEKRQQEESNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1324
Query: 561 EVNPV 565
VN V
Sbjct: 1325 GVNLV 1329
Score = 54 (24.1 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 288 LTEITVLQKKVYASILRKELPKLLALSSRTAN 319
+ ++ ++KV+ SI++KELPK S N
Sbjct: 272 IEQLNARRRKVWLSIVKKELPKANKQKSSARN 303
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 202/495 (40%), Positives = 279/495 (56%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D + +G+T +L+P+Q++G++WL++ Y + +LGDEMGLGKT Q IS L YL +
Sbjct: 35 DVSRWGLTGIKLRPYQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLLLYLTKKLTN 94
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
L+LCPLSV W E+ +F P L + YVG +E+R ++ +++KEQS
Sbjct: 95 KERSLILCPLSVLSNWKEELERFAPGLSFVTYVGNKEERYKLQ----QNLKEQSH----- 145
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL W ++DEA RLKN +S+LY L E + LL+
Sbjct: 146 ---FRVLLTTYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTE-LPVGFSLLL 201
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263
TGTPIQN+L EL++L+ F P +F + +F+ ++ AV S P KE L
Sbjct: 202 TGTPIQNSLQELYSLLSFIEPDIFPRKQVKEFVEYYQ-AVEKESEPA----KE----LHN 252
Query: 264 ILSAFMLRRTKQKLV-ECGHLMLPPLTE-ITVLQKKVYASILRKELP------------- 308
+L F+LRR K ++ + + L ++ LQ+K Y +IL K+L
Sbjct: 253 LLQPFLLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILTKDLDAFEGGTGRKVMLQ 312
Query: 309 KLLALSSRTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQM 354
+L + H L N ASG Y+ GHRVLLF+QM
Sbjct: 313 NVLIQLRKCVAHPYLFNGVEPEPFEIGDHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQM 372
Query: 355 TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414
T+ LDILQD+++ R YSYERLDGS+R EER AI++F G FVF++
Sbjct: 373 TKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNF-------------GQQPIFVFLL 419
Query: 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVI 474
STRAGGVG+NL AADTVIF + D+NPQ D QA+ RAHRIGQ V I L+ TVEE+I
Sbjct: 420 STRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVEEII 479
Query: 475 MRRAERKLRLSHNVV 489
RRA KLRL++ +V
Sbjct: 480 YRRAASKLRLTNAIV 494
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 196/495 (39%), Positives = 277/495 (55%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D ++G+T L+P+Q++G++WL + + +LGDEMGLGKT Q I+ YL
Sbjct: 37 DLRQWGLTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLND 96
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL+LCPLSV W EM +F P L + Y G++++R +++ + K++S+
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDL----KQESR----- 147
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL PW ++DEA RLKN SS+L+ L E F + LL+
Sbjct: 148 ---FHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSE-FSVVFSLLL 203
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263
TGTPIQN+L EL++L+ F P +F + F+ ++D S E + L
Sbjct: 204 TGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKES---------ESASELYK 254
Query: 264 ILSAFMLRRTKQKLV-ECGHLMLPPLTE-ITVLQKKVYASILRKELP----------KL- 310
+L F+LRR K ++ E + ++ LQKK Y +IL K+L KL
Sbjct: 255 LLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQ 314
Query: 311 --LALSSRTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQM 354
L+ + +H L + ASG Y+ GHRVLLF+QM
Sbjct: 315 NVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQM 374
Query: 355 TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414
TQ LDILQD+L+ R YSYER+DGS+R EER AI++F G F F++
Sbjct: 375 TQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF-------------GQQPIFTFLL 421
Query: 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVI 474
STRAGGVG+NL AADTVIF++ D+NPQ D QA RAHRIGQ V I L+ TVEE++
Sbjct: 422 STRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 481
Query: 475 MRRAERKLRLSHNVV 489
R+A KL+L++ ++
Sbjct: 482 YRKAASKLQLTNTII 496
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 477 (173.0 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 109/295 (36%), Positives = 168/295 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 517 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 576
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ IRR Q + PF V++T+
Sbjct: 577 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLYT-QDAPFHVVITS 630
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 631 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 689
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 690 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 749
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + + ++T QK +Y ++ K + L SS + Q+ QNT S
Sbjct: 750 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTS 803
Score = 349 (127.9 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 90/245 (36%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1098 TDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1157
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1158 DMVADFQNR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1205
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1206 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1265
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EE++ + R EK + +++ GK RK
Sbjct: 1266 SLLLDD-EELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1321
Query: 561 EVNPV 565
VN V
Sbjct: 1322 GVNLV 1326
Score = 53 (23.7 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ SI++KELPK
Sbjct: 270 IEQLNARRRKVWLSIVKKELPK 291
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 471 (170.9 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 107/295 (36%), Positives = 168/295 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 519 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 578
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ ++T+Y PF V++T+
Sbjct: 579 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKK-KKTLY-----------TQDAPFHVVITS 626
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 627 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 685
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 686 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 745
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + + ++T QK +Y ++ K + L SS + Q+ QNT S
Sbjct: 746 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTS 799
Score = 355 (130.0 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 91/245 (37%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1095 TDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1154
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1155 DMVADFQTR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1202
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1203 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1262
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EES+ + R EK + +++ GK RK
Sbjct: 1263 SLLLDD-EELEKKLRLRQEEKRQQEESNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1318
Query: 561 EVNPV 565
VN V
Sbjct: 1319 GVNLV 1323
Score = 54 (24.1 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 288 LTEITVLQKKVYASILRKELPKLLALSSRTAN 319
+ ++ ++KV+ SI++KELPK S N
Sbjct: 272 IEQLNARRRKVWLSIVKKELPKANKQKSSARN 303
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 205/542 (37%), Positives = 298/542 (54%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D +G+T L+P+Q+EG++WL + + +LGDEMGLGKT Q I+ YL
Sbjct: 37 DLRRWGLTGIHLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLND 96
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL+LCPLSV W EM + P L + Y G++E+R ++++ + K++S
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERCAPGLCCVTYAGDKEERAHLQQDL----KQESG----- 147
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL PW ++DEA RLKN +S+L+ L E F + RLL+
Sbjct: 148 ---FHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSE-FSVAFRLLL 203
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAV-HSSSAPKRGKIKEQFT--S 260
TGTPIQN+L EL++L+ F P +F + F+ ++D S SA + K+ + F
Sbjct: 204 TGTPIQNSLQELYSLLSFVEPDLFSKEEVEDFVQRYEDIEKESESASELYKLLQPFLLRR 263
Query: 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYAS-ILRKELPKLLALSS---- 315
+K ++A + ++T + ++ G L +L K + S E+ K + L +
Sbjct: 264 VKAEVAAELPKKT-EVVIYHGMSALQKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQ 322
Query: 316 --RTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLD 359
+ +H L + ASG Y+ GHRVLLF+QMTQ LD
Sbjct: 323 LRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLD 382
Query: 360 ILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419
ILQD+++ R YSYER+DGS+R EER AI++F G F+F++STRAG
Sbjct: 383 ILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-------------GQQPIFIFLLSTRAG 429
Query: 420 GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479
GVG+NL AADTVIF + D+NPQ D QA RAHRIGQ V I L+ TVEE+I R+A
Sbjct: 430 GVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAA 489
Query: 480 RKLRLSHNVVGDDVVDREVKERTAVETD-DLRSII-FGLHLFDPKAINNEES--DDLRLS 535
KL+L++ ++ +R A E D L I+ FGL K +++E S D++ L
Sbjct: 490 SKLKLTNTIIEGGRFTLGA-QRPAAEADLQLSEILKFGLD----KLLSSEGSTMDEIDLE 544
Query: 536 GL 537
+
Sbjct: 545 SI 546
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 473 (171.6 bits), Expect = 4.3e-77, Sum P(2) = 4.3e-77
Identities = 107/295 (36%), Positives = 167/295 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 520 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 579
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ IRR Q + PF V++T+
Sbjct: 580 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLYT-QDAPFHVVITS 633
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 634 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 692
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 693 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 752
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + + ++T QK +Y ++ K + L SS + Q+ T+S
Sbjct: 753 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSS 807
Score = 349 (127.9 bits), Expect = 4.3e-77, Sum P(2) = 4.3e-77
Identities = 90/245 (36%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1102 TDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1161
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1162 DMVADFQNR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1209
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1210 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1269
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EE++ + R EK + +++ GK RK
Sbjct: 1270 SLLLDD-EELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1325
Query: 561 EVNPV 565
VN V
Sbjct: 1326 GVNLV 1330
Score = 53 (23.7 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ SI++KELPK
Sbjct: 273 IEQLNARRRKVWLSIVKKELPK 294
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 473 (171.6 bits), Expect = 4.3e-77, Sum P(2) = 4.3e-77
Identities = 107/295 (36%), Positives = 167/295 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 526 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 585
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ IRR Q + PF V++T+
Sbjct: 586 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLYT-QDAPFHVVITS 639
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 640 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 698
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 699 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 758
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + + ++T QK +Y ++ K + L SS + Q+ T+S
Sbjct: 759 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSS 813
Score = 349 (127.9 bits), Expect = 4.3e-77, Sum P(2) = 4.3e-77
Identities = 89/245 (36%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1108 TDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1167
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1168 DMVADFQTR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1215
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1216 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1275
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EE++ + R EK + +++ GK RK
Sbjct: 1276 SLLLDD-EELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1331
Query: 561 EVNPV 565
+N V
Sbjct: 1332 GMNLV 1336
Score = 53 (23.7 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ SI++KELPK
Sbjct: 279 IEQLNARRRKVWLSIVKKELPK 300
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 473 (171.6 bits), Expect = 5.5e-77, Sum P(2) = 5.5e-77
Identities = 107/295 (36%), Positives = 167/295 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 526 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 585
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E +F PK +VL Y G R+ IRR Q + PF V++T+
Sbjct: 586 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLYT-QDAPFHVVITS 639
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 640 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 698
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 699 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 758
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + + ++T QK +Y ++ K + L SS + Q+ T+S
Sbjct: 759 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSS 813
Score = 348 (127.6 bits), Expect = 5.5e-77, Sum P(2) = 5.5e-77
Identities = 89/245 (36%), Positives = 135/245 (55%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF 385
T SG + GHRVL+++QMT+ +D+L++++ RK++Y RLDGS + ER
Sbjct: 1108 TDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERR 1167
Query: 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQ 445
+ F + ND FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+Q
Sbjct: 1168 DMVADFQNR------------NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1215
Query: 446 ALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERT 502
A+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+ D + KE
Sbjct: 1216 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1275
Query: 503 AVETDDLRSIIFGLHLFDPKAINNEESDDL--RLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
++ DD + L L + EE++ + R EK + +++ GK RK
Sbjct: 1276 SLLLDD-EELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEK--KKKEDELDGKR-RKE 1331
Query: 561 EVNPV 565
+N V
Sbjct: 1332 GINLV 1336
Score = 53 (23.7 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ SI++KELPK
Sbjct: 279 IEQLNARRRKVWLSIVKKELPK 300
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 196/495 (39%), Positives = 276/495 (55%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D ++G+T L+P+Q++G++WL + + +LGDEMGLGKT Q I+ YL
Sbjct: 37 DLRQWGLTGIHLRPYQLQGVNWLAQCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLND 96
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL+LCPLSV W EM +F P L + Y G++++R +++ + K++S+
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDL----KQESR----- 147
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL PW ++DEA RLKN SS+L+ L E F + LL+
Sbjct: 148 ---FHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSE-FSVVFSLLL 203
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263
TGTPIQN+L EL++L+ F P +F + F+ ++D S E + L
Sbjct: 204 TGTPIQNSLQELYSLLSFVEPDLFSKEQVEDFVQRYQDIEKES---------ESASELYK 254
Query: 264 ILSAFMLRRTKQKLV-ECGHLMLPPLTE-ITVLQKKVYASILRKELP----------KL- 310
+L F+LRR K ++ E + ++ LQKK Y +IL K+L KL
Sbjct: 255 LLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQ 314
Query: 311 --LALSSRTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQM 354
L+ + +H L + ASG Y+ GHRVLLF+QM
Sbjct: 315 NVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQM 374
Query: 355 TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414
TQ LDILQD+L+ R YSYER+DGS+R EER AI++F G F F+
Sbjct: 375 TQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF-------------GQQPIFTFL- 420
Query: 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVI 474
STRAGGVG+NL AADTVIF++ D+NPQ D QA RAHRIGQ V I L+ TVEE++
Sbjct: 421 STRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIV 480
Query: 475 MRRAERKLRLSHNVV 489
R+A KL+L++ ++
Sbjct: 481 YRKAASKLQLTNTII 495
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 462 (167.7 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 104/281 (37%), Positives = 164/281 (58%)
Query: 30 EFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPF 89
E+ + L+ +Q+EGL++L+ +L NV+L DEMGLGKT+Q++S L +L+ +Q PGPF
Sbjct: 618 EWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPF 677
Query: 90 LVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPF 149
LV+ PLS W E K+ P + ++ YVG R R ++ YE E+ ++ P+ F
Sbjct: 678 LVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQ--YEFYNEK-KVGR--PIKF 732
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
+ LLTTY+VVL D+ LS+I W Y ++DEA RLKN + LY L E F +LL+TGTP
Sbjct: 733 NALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLE-FSTKNKLLITGTP 791
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QN++ ELWAL+HF P F ++F+ +K+ S+ ++ L+ + +
Sbjct: 792 LQNSVEELWALLHFLDPGKFKNKDEFVENYKNL----SSFNESELANLHLELRPHILRRV 847
Query: 270 LRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKL 310
++ ++ L +L E++ LQK+ Y IL + L
Sbjct: 848 IKDVEKSLPPKIERILR--VEMSPLQKQYYKWILERNFHDL 886
Score = 368 (134.6 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 90/217 (41%), Positives = 133/217 (61%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QM + LDIL ++L LR + ++RLDGS +AE R A+ HF+ A
Sbjct: 956 HRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFN-----------AP 1004
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
+D F F++STRAGG+G+NL ADTV+ ++ DWNPQ D QA+ RAHRIGQ V V
Sbjct: 1005 ASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFV 1064
Query: 466 TEHTVEEVIMRRAERKLRLSHNVV----GDDVVD-REVKERTAVETDDLRSII-FGLH-L 518
T +VEE I+ RA+RK+ L H V+ + ++ RE K+ + + ++L +I+ FG L
Sbjct: 1065 TSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKKGSNFDKNELSAILRFGAEEL 1124
Query: 519 FDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGK 555
F K N+E RL ++ +++++ R EQV K
Sbjct: 1125 F--KEDKNDEESKKRLLSMD--IDEILE-RAEQVEEK 1156
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 469 (170.2 bits), Expect = 2.4e-76, Sum P(2) = 2.4e-76
Identities = 109/296 (36%), Positives = 166/296 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 522 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 581
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E A+F PK +VL Y G R+ IR+ Q + PF V++T+
Sbjct: 582 STLNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKFW-----SQKTLYT-QDAPFHVVITS 635
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ SSV + +L + F RLL+TGTPIQN ++
Sbjct: 636 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 694
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 695 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 754
Query: 276 KLVE--CGHLMLPPLTEITVLQKKVYASILRK-ELPKLLALSSRTANHQSLQNTAS 328
+ + + + T QK +Y ++ K + LL S T Q Q T S
Sbjct: 755 DVENELSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSMGTT--QQAQTTTS 808
Score = 346 (126.9 bits), Expect = 2.4e-76, Sum P(2) = 2.4e-76
Identities = 79/196 (40%), Positives = 117/196 (59%)
Query: 316 RTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERL 375
R + +SL T SG + GHRVL+++QMT+ +D+L++++ RK++Y RL
Sbjct: 1097 RIPDKESLI-TDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRL 1155
Query: 376 DGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435
DGS + ER + F + ND FVF++STRAGG+G+NL AADTVIFY+
Sbjct: 1156 DGSSKISERRDMVADFQNR------------NDIFVFLLSTRAGGLGINLTAADTVIFYD 1203
Query: 436 QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDV 493
DWNP VD+QA+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+
Sbjct: 1204 SDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK 1263
Query: 494 VDR-EVKERTAVETDD 508
D + KE ++ DD
Sbjct: 1264 PDTLKPKEVVSLLLDD 1279
Score = 53 (23.7 bits), Expect = 4.4e-28, Sum P(2) = 4.4e-28
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ SI++KELPK
Sbjct: 275 IEQLNARRRKVWLSIVKKELPK 296
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 210/552 (38%), Positives = 302/552 (54%)
Query: 12 KIIHDN-DERDGQ--TPVDAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLG 67
+ + DN E+D T D ++G+ A L+P+Q++G+ WL +LGDEMGLG
Sbjct: 6 RAVRDNIPEKDKSELTENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLG 65
Query: 68 KTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNI 127
KT Q IS L+Y + S GPFLVLCPL+V + W E+ +F P L V+ Y G++E+R +
Sbjct: 66 KTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAEL 125
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
+ +++K + F VLLTTY++ L D +L W ++DEA RLKN S
Sbjct: 126 Q----QNLKSDPR--------FHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQES 173
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+L+ L+E F + R+L+TGTPIQNNL E+++L+ F PSVF L + + F +A ++
Sbjct: 174 LLHQTLKE-FTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVF--LPEAVEDFVNA-YADI 229
Query: 248 APKRGKIKEQFTSLKGILSAFMLRRTKQKLV-ECGHLM-LPPLTEITVLQKKVYASILRK 305
+ + E L +L F+LRR K ++ E L ++ LQK+ Y +IL +
Sbjct: 230 QTEPALVDE----LHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMR 285
Query: 306 ELPKLLA-LSSRT------------ANHQSLQN--------------TASGXXXXXXXXX 338
+L S++T +H L + ASG
Sbjct: 286 DLDAFRTDQSTKTRLLNVLMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASGKLSLLDSML 345
Query: 339 XXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE 398
GH VLLF+QMT+ LDILQD+LE R YSYERLDGS+R EER AI++FS +
Sbjct: 346 AYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTK---- 401
Query: 399 RLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458
D F+F++ST+AGGVG+NL AADTVIF + D+NPQ D QA RAHRIGQ
Sbjct: 402 ---------DVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRP 452
Query: 459 VLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH 517
V I L+ T+EE+I RA KLRL+ V+ + + ++A L I+ FG+
Sbjct: 453 VKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQLSEILKFGVD 512
Query: 518 LFDPKAINNEES 529
K +++EES
Sbjct: 513 ----KLLSSEES 520
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 477 (173.0 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 113/302 (37%), Positives = 177/302 (58%)
Query: 15 HDNDERDGQTPV-DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI 73
H +DE T + ++ + +L+ +Q++GL+WLI Y ++ +L DEMGLGKTLQ I
Sbjct: 116 HQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTI 175
Query: 74 SFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133
SFL YL++ + GPF+V+ P S D W E AK+TP + V+ G++EQR +I
Sbjct: 176 SFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASI------ 229
Query: 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193
+K+Q + FDVL+T+++++L ++ L + W Y ++DEA R+KN S L ++
Sbjct: 230 -IKDQLYTAK-----FDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKII 283
Query: 194 REHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGK 253
R F RLL+TGTP+QNNL ELWAL++F +P VFG +QF F D +S + K
Sbjct: 284 RL-FYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAF-DNQNSEELDEEEK 341
Query: 254 IKEQ---FTSLKGILSAFMLRRTKQKLVECGHLMLPPL-TEI----TVLQKKVYASILRK 305
+ Q + L +LS F+LRR K + + +LP + T + T +Q + Y +L K
Sbjct: 342 QRRQDKAVSELHQLLSPFLLRRVKADVEKS---LLPKIETNVYIGMTDMQVEWYKRLLEK 398
Query: 306 EL 307
++
Sbjct: 399 DI 400
Score = 331 (121.6 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 67/145 (46%), Positives = 93/145 (64%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D+ R Y Y R+DGS E+R AI ++ A
Sbjct: 469 GSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYN-----------A 517
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
++ F+F+++TRAGG+G+NL +AD VI Y+ DWNPQ D QA+ RAHRIGQ V
Sbjct: 518 PDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRF 577
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VTE +EE ++ RA +KLRL V+
Sbjct: 578 VTEKAIEEKVLERAAQKLRLDQLVI 602
Score = 45 (20.9 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 470 VEEVIMRRAERKLRLSH--NVVGDDVVDREVKERTAVE 505
VEE++ R AE+ L++ N +G D + + +A E
Sbjct: 645 VEEILKRGAEKTAELNNKFNKLGLDDIQNFTSDASAYE 682
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 477 (173.0 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 113/302 (37%), Positives = 177/302 (58%)
Query: 15 HDNDERDGQTPV-DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI 73
H +DE T + ++ + +L+ +Q++GL+WLI Y ++ +L DEMGLGKTLQ I
Sbjct: 116 HQDDEDHQHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTI 175
Query: 74 SFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133
SFL YL++ + GPF+V+ P S D W E AK+TP + V+ G++EQR +I
Sbjct: 176 SFLGYLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASI------ 229
Query: 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193
+K+Q + FDVL+T+++++L ++ L + W Y ++DEA R+KN S L ++
Sbjct: 230 -IKDQLYTAK-----FDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKII 283
Query: 194 REHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGK 253
R F RLL+TGTP+QNNL ELWAL++F +P VFG +QF F D +S + K
Sbjct: 284 RL-FYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAF-DNQNSEELDEEEK 341
Query: 254 IKEQ---FTSLKGILSAFMLRRTKQKLVECGHLMLPPL-TEI----TVLQKKVYASILRK 305
+ Q + L +LS F+LRR K + + +LP + T + T +Q + Y +L K
Sbjct: 342 QRRQDKAVSELHQLLSPFLLRRVKADVEKS---LLPKIETNVYIGMTDMQVEWYKRLLEK 398
Query: 306 EL 307
++
Sbjct: 399 DI 400
Score = 331 (121.6 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 67/145 (46%), Positives = 93/145 (64%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D+ R Y Y R+DGS E+R AI ++ A
Sbjct: 469 GSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYN-----------A 517
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
++ F+F+++TRAGG+G+NL +AD VI Y+ DWNPQ D QA+ RAHRIGQ V
Sbjct: 518 PDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRF 577
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VTE +EE ++ RA +KLRL V+
Sbjct: 578 VTEKAIEEKVLERAAQKLRLDQLVI 602
Score = 45 (20.9 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 470 VEEVIMRRAERKLRLSH--NVVGDDVVDREVKERTAVE 505
VEE++ R AE+ L++ N +G D + + +A E
Sbjct: 645 VEEILKRGAEKTAELNNKFNKLGLDDIQNFTSDASAYE 682
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 211/540 (39%), Positives = 292/540 (54%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVN-VLLGDEMGLGKTLQAISFLSYLKFSQM 84
D E+G+T L+ +Q+EG++WL++ + G N +LGDEMGLGKT Q I+ L YL
Sbjct: 29 DLQEWGLTGIRLRSYQLEGVNWLVQCFH-GQNGCILGDEMGLGKTCQTIALLIYLVGRLN 87
Query: 85 SPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNV 144
GPFL+LCPLSV W EM +F P L + Y G++E+R RR + ++++S
Sbjct: 88 DEGPFLILCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERA--RRQ--QDLRQESG---- 139
Query: 145 SPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLL 204
F VLLTTY++ L D FL W +DEA RLKN SS+L+ L E F + RLL
Sbjct: 140 ----FHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSE-FSVVFRLL 194
Query: 205 MTGTPIQNNLSELWALMHFCMPSVF--GTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLK 262
+TGTPIQN+L EL++L+ P +F + F+ ++D S + + L
Sbjct: 195 LTGTPIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSA---------SELH 245
Query: 263 GILSAFMLRRTK-QKLVECGHLMLPPLTE-ITVLQKKVYASILRKELP-------KLLAL 313
+L F+LRR K Q E + ++ LQKK Y +IL K+L K + L
Sbjct: 246 RLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKL 305
Query: 314 SS------RTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQ 353
+ + +H L + ASG Y+ GHRVLLF+Q
Sbjct: 306 QNVLTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQ 365
Query: 354 MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFM 413
MT LDILQD+++ R YSYER+DGS+R EER AI++F G FVF+
Sbjct: 366 MTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-------------GKQPIFVFL 412
Query: 414 ISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEV 473
+STRAGGVG+NL AADTVIF + D+NPQ D QA RAHRIGQ V I L+ TVEE+
Sbjct: 413 LSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEI 472
Query: 474 IMRRAERKLRLSHNVVGDDVVDREVKERTAVETD-DLRSII-FGLH-LFDPKAINNEESD 530
+ R+A KL+L++ V+ ++ A E D L I+ FGL L + + +E D
Sbjct: 473 VYRKAASKLQLTNMVIEGGHFTLGA-QKPAAEADLQLSEILKFGLDKLLSSEGSSMDEID 531
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 490 (177.5 bits), Expect = 6.3e-76, Sum P(2) = 6.3e-76
Identities = 116/322 (36%), Positives = 180/322 (55%)
Query: 16 DNDERDGQTPVDAAEFGV------TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKT 69
+ DE + Q P E + LK +Q++GL+WL Y G+N +L DEMGLGKT
Sbjct: 679 EEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKT 738
Query: 70 LQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR 129
+Q+IS L++L + GPFLV+ P S WV+E++KF P+ ++L Y G R+ +R+
Sbjct: 739 VQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRK 798
Query: 130 TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189
++ K N PF V++T+Y +V+ D +L ++ W Y I+DEAQ +K+ S
Sbjct: 799 -FWDR-KNLRYNKNA---PFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSR 853
Query: 190 Y-NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSA 248
+ N+L H RLL+TGTPIQN++ ELWAL+HF MPS+F + ++F F + S +
Sbjct: 854 WKNLLSFH--CRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAE 911
Query: 249 PKRGKIKEQFTSLKGILSAFMLRRTKQKLV-ECGH-LMLPPLTEITVLQKKVYASILRKE 306
++Q L IL FMLRR K+ + E G + + L ++T Q K+Y +L+ +
Sbjct: 912 ANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLY-QVLKSQ 970
Query: 307 LPKLLALSSRTANHQSLQNTAS 328
+ A + S N+AS
Sbjct: 971 ISTNYDAIENAATNDSTSNSAS 992
Score = 320 (117.7 bits), Expect = 6.3e-76, Sum P(2) = 6.3e-76
Identities = 65/165 (39%), Positives = 101/165 (61%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GHRVL++ QMT+ +D+++++L R+Y++ RLDGS + E+R + + I
Sbjct: 1313 SEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEI----- 1367
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
FVF++STRAGG+G+NL AADTVIFY+ DWNP +D QA+ RAHR+GQ V
Sbjct: 1368 -------FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVY 1420
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETD 507
L+ T+EE + RA++K ++ V+ ++ +K E D
Sbjct: 1421 RLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEVGEND 1465
Score = 37 (18.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 176 IDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+D A +LKN ++N + L +TG P N
Sbjct: 1102 VDIANKLKNVKFNIFNPSTNYELCLFLSKLTGEPSLN 1138
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 207/542 (38%), Positives = 290/542 (53%)
Query: 23 QTPVDAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKF 81
Q P D ++G+T L+ +Q+EG++WL++ + +LGDEMGLGKT Q I+ L YL
Sbjct: 26 QEP-DLQQWGLTGIRLRSYQLEGVNWLVQCFHCQNGCILGDEMGLGKTCQTIALLIYLVG 84
Query: 82 SQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQM 141
GPFLVLCPLSV W EM +F P L + Y G++E+R +++ + +++S
Sbjct: 85 RLNDEGPFLVLCPLSVLSNWKEEMERFAPGLSCVTYTGDKEERARLQQDL----RQESG- 139
Query: 142 SNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPR 201
F VLLTTY++ L D FL W +DEA RLKN SS+L+ L E F
Sbjct: 140 -------FHVLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSE-FSAVF 191
Query: 202 RLLMTGTPIQNNLSELWALMHFCMPSVF--GTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259
RLL+TGTPIQN+L EL++L+ P +F + F+ ++D S + +
Sbjct: 192 RLLLTGTPIQNSLRELYSLLCVVEPDLFCREQVEDFVQRYQDIEKESKSA---------S 242
Query: 260 SLKGILSAFMLRRTK-QKLVECGHLMLPPLTE-ITVLQKKVYASILRKELP-------KL 310
L +L F+LRR K Q E + ++ LQKK Y +IL K+L K
Sbjct: 243 ELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKK 302
Query: 311 LALSS------RTANHQSLQN--------------TASGXXXXXXXXXXXXYNSGHRVLL 350
+ L + + +H L + ASG Y+ GHRVLL
Sbjct: 303 VKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLL 362
Query: 351 FAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAF 410
F+QMT LDILQD+++ R YSYER+DGS+R EER AI++F G F
Sbjct: 363 FSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-------------GNQPIF 409
Query: 411 VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTV 470
VF++STRAGGVG+NL AADTVIF + D+NPQ D QA RAHRIGQ V I L+ TV
Sbjct: 410 VFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTV 469
Query: 471 EEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-LFDPKAINNEE 528
EE++ R+A KL+L++ V+ ++ +A L I+ FGL L + + E+
Sbjct: 470 EEIVYRKAASKLQLTNMVIEGGHFTPGAQKPSAEADFQLSEILKFGLDKLLSSEGSSMED 529
Query: 529 SD 530
D
Sbjct: 530 ID 531
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 465 (168.7 bits), Expect = 8.4e-76, Sum P(2) = 8.4e-76
Identities = 106/295 (35%), Positives = 171/295 (57%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G++WL Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++ P
Sbjct: 518 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 577
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W E ++F PK +VL Y G R+ IR+ + +Q + PF V++T+
Sbjct: 578 STLNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRK-FWSQKTLYTQNA-----PFHVVITS 631
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V+ D + ++ W Y ++DEAQ LK+ +SV + +L + F RLL+TGTPIQN ++
Sbjct: 632 YQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQ-FQCRNRLLLTGTPIQNTMA 690
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MP++F + +F F + S + K + Q + L IL FMLRR K+
Sbjct: 691 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 750
Query: 276 KLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS 328
+ + LT ++T Q+ +Y ++ K + L SS + Q+ T+S
Sbjct: 751 DVENELSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQAHSTTSS 805
Score = 345 (126.5 bits), Expect = 8.4e-76, Sum P(2) = 8.4e-76
Identities = 108/311 (34%), Positives = 163/311 (52%)
Query: 316 RTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERL 375
R + +SL T SG + GHRVL+++QMT+ +D+L++++ RK++Y RL
Sbjct: 1120 RIPDKESLI-TDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRL 1178
Query: 376 DGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435
DGS + ER + F QS D FVF++STRAGG+G+NL AADTVIFY+
Sbjct: 1179 DGSSKISERRDMVADF--QSR----------TDIFVFLLSTRAGGLGINLTAADTVIFYD 1226
Query: 436 QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDV 493
DWNP VD+QA+ RAHR+GQ V L+ + T+EE I++RA+ K + V+ G+
Sbjct: 1227 SDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK 1286
Query: 494 VDR-EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQV 552
D + KE ++ DD + L L + EES ++ EK + ++
Sbjct: 1287 PDTLKPKEVVSLLLDD-EELEKKLRLRQEEKRQLEESS--KVKERKRKREKYAERKRKED 1343
Query: 553 SGKAGRKFE-VN---P-VALLEESDLLM--HESFASA---TSYPD-LDEASYRSWVEKFK 601
++ RK E VN P V + S+L +SF S ++ P E S S ++
Sbjct: 1344 DPESKRKKEGVNMVIPYVPSADNSNLSADGEDSFISVDMDSAIPSPFSEISLSSELQPSS 1403
Query: 602 -EASESSSNTI 611
A ESSS+ +
Sbjct: 1404 IPADESSSDML 1414
Score = 46 (21.3 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 288 LTEITVLQKKVYASILRKELPK 309
+ ++ ++KV+ +I +KE+PK
Sbjct: 271 IEQLNARRRKVWLTIAKKEIPK 292
Score = 37 (18.1 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 301 SILRKELPKLLALSSRTANHQS 322
++ R+EL +L L T HQS
Sbjct: 156 TMTREELQDMLRLHKFTRLHQS 177
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 200/536 (37%), Positives = 290/536 (54%)
Query: 27 DAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
D ++G+T L+ +Q+EG++WL R + +LGDEMGLGKT Q I+ YL
Sbjct: 37 DLQQWGLTGIRLRSYQLEGVNWLARCFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLND 96
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL+LCPLSV W EM +F P L + Y G++E+R +++ + K++S+
Sbjct: 97 EGPFLILCPLSVLSNWTEEMERFAPGLSCVMYAGDKEERARLQQDL----KQESR----- 147
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F VLLTTY++ L D FL PW ++DEA RLKN +S+L+ L E F + LL+
Sbjct: 148 ---FHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLE-FSVVFSLLL 203
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGT--LNQFLSTFKDAV-HSSSAPKRGKIKEQFT--S 260
TGTPIQN+L EL++L+ F P +F + F+ ++D S SA + K+ + F
Sbjct: 204 TGTPIQNSLQELYSLLSFVEPDLFPKEQVGDFVQRYQDIEKESDSASELHKLLQPFLLRR 263
Query: 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKV--YASILRKE--LPKLLALSSR 316
+K ++ + ++T+ L G L +L K + + S + K+ L +L+ +
Sbjct: 264 VKAEVATELPKKTEVVLYH-GMSALQKKYYKAILMKDLDAFESEMAKKVKLQNVLSQLRK 322
Query: 317 TANHQSLQN-------------TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQD 363
+H L T GHRVLLF+QMTQ LDILQD
Sbjct: 323 CVDHPYLFEGETVPFFLTLLFMTTPLKNLELAALSFLFLARGHRVLLFSQMTQMLDILQD 382
Query: 364 FLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423
+++ R YSYER+DGS+R EER AI++F G FVF++STRAGGVG+
Sbjct: 383 YMDYRGYSYERVDGSVRGEERHLAIKNF-------------GQQPVFVFLLSTRAGGVGM 429
Query: 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLR 483
NL AADTVIF + D+NPQ D QA RAHRIGQ V I L+ TVEE++ R+A KL+
Sbjct: 430 NLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQ 489
Query: 484 LSHNVVGDDVVDREVKERTAVETD-DLRSII-FGLH-LFDPKAINNEESDDLRLSG 536
L++ ++ ++ A + D L I+ FGL L + +E D R+ G
Sbjct: 490 LTNAIIEGGHFTLGA-QKPAADADLQLSEILKFGLDKLLSSQGSTMDEIDLERILG 544
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 473 (171.6 bits), Expect = 1.1e-75, Sum P(2) = 1.1e-75
Identities = 108/296 (36%), Positives = 168/296 (56%)
Query: 16 DNDERDGQTPVDAAEFGV------TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKT 69
D+ E + Q P + + TA+LK +Q++GL+WL+ Y G+N +L DEMGLGKT
Sbjct: 771 DDSELNFQNPTSLGDIEISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKT 830
Query: 70 LQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR 129
+Q+IS ++YL GPFLV+ P S W E+ KF P ++VL Y G + R+ +R+
Sbjct: 831 IQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890
Query: 130 TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189
++ ++ F VL+T+Y +V++D + ++ W Y I+DEAQ +K+ S
Sbjct: 891 FW-----DRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSR 945
Query: 190 YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAP 249
+ L F RLL+TGTPIQNN+ ELWAL+HF MP++F + ++F F + S A
Sbjct: 946 WKSLLG-FHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDIESH-AQ 1003
Query: 250 KRGKIKE-QFTSLKGILSAFMLRRTKQKLV-ECGHLMLPPL-TEITVLQKKVYASI 302
K+ E Q L IL FMLRR K+ + E G + + ++T Q+ +Y ++
Sbjct: 1004 SNTKLNEDQLRRLHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNL 1059
Score = 336 (123.3 bits), Expect = 1.1e-75, Sum P(2) = 1.1e-75
Identities = 72/168 (42%), Positives = 102/168 (60%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVLL+ QMT+ +D+++++L R Y Y RLDGS + E+R + F +
Sbjct: 1337 GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRP--------- 1387
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++STRAGG+G+NL AADTVIFY+ DWNP +D QA+ RAHR+GQ V L
Sbjct: 1388 ---DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRL 1444
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDV---VDREVKERTAVETDDL 509
+T T+EE I +RA +K + V+ VD + R + +T D+
Sbjct: 1445 ITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDS-KTKDI 1491
Score = 46 (21.3 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 294 LQKKVYASILRKELPKLLA--LSSRTANHQSLQNTA 327
+ ++++ I RK++PK+ ++S + ++L+ TA
Sbjct: 566 IYEQIWRDIARKDIPKVYRTKVNSLSTRQENLRKTA 601
Score = 39 (18.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 111 KLEVLRYVGEREQRRNIRRTM--YEHVKEQSQMSNVSPL 147
K + LR ER QR+ I+ T E V E ++ ++PL
Sbjct: 429 KAKFLREA-ERAQRK-IKTTKRALEGVTEPEEIGEITPL 465
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 478 (173.3 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
Identities = 112/296 (37%), Positives = 169/296 (57%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LK +Q++GL+WL Y G+N +L DEMGLGKT+Q+IS L+YL + GPFLV+ P S
Sbjct: 672 LKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPAS 731
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W E+ KF P+ +VL Y G + R+ +R+ ++ + PF VL+T+Y
Sbjct: 732 TLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFW-----DRKSLRYDKDSPFHVLVTSY 786
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+++ D + ++ W Y I+DEAQ +K+ SS + L + RLL+TGTPIQN++ E
Sbjct: 787 QLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLL-NLTCRNRLLLTGTPIQNSMQE 845
Query: 217 LWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQK 276
LWAL+HF MPS+F + ++F F + S + ++Q L IL FMLRR K+
Sbjct: 846 LWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKN 905
Query: 277 LV-ECGHLM-LPPLTEITVLQKKVYASILRKELPK----LLALSSR-TANHQSLQN 325
+ E G + + ++T QKK+Y LR ++ LL L S T++ SL N
Sbjct: 906 VQSELGDKVEIDVYCDLTTRQKKLYQQ-LRSQISMSDTDLLELESNSTSSDSSLAN 960
Score = 328 (120.5 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
Identities = 66/147 (44%), Positives = 92/147 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHR+L++ QMT+ + I +++L + Y Y RLDGS E R ++ + I
Sbjct: 1252 GHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEI------- 1304
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+FM+STRAGG+GLNL +ADTVIFY+ DWNP +D QA+ RAHRIGQ V L
Sbjct: 1305 -----FIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRL 1359
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD 491
VT +T+E+ I+ RA+ K + VVG+
Sbjct: 1360 VTRNTIEQKILERAKEKEEIQKLVVGN 1386
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 730 (262.0 bits), Expect = 3.4e-74, Sum P(3) = 3.4e-74
Identities = 208/609 (34%), Positives = 314/609 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFLV+ PL
Sbjct: 485 ELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPL 544
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E + P++ V+ Y+G+ R IR YE + QS+ L F+ L+TT
Sbjct: 545 STLTSWQREFEVWAPEINVVVYIGDLMSRNMIRE--YEWIHSQSKR-----LKFNALITT 597
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 598 YEILLKDKAVLGSISWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 656
Query: 216 ELWALMHFCMPSVF----------G--------TLNQFLSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F G +L++ L F KD S A
Sbjct: 657 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVE 716
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P+
Sbjct: 717 QILRVEMSALQKQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEEN 776
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
+ QSL + SG + G+RVL+F+QM + LDIL ++L ++ Y
Sbjct: 777 ERENGIETLQSLIRS-SGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYP 835
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ A G++ F F++STRAGG+G+NL +ADTV
Sbjct: 836 FQRLDGSIKGEIRKQALDHFN-----------ADGSEDFCFLLSTRAGGLGINLASADTV 884
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ TVEE I+ RA++K+ L H V+
Sbjct: 885 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQR 944
Query: 492 -DVVDREVKERTAVET-------DDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D R V + + + ++L +I+ FG LF K + EES+ + ++ ++
Sbjct: 945 MDTTGRTVLDNNSGRSNSNPFNKEELTAILKFGAEDLF--KELEGEESEPQEMD-IDEIL 1001
Query: 542 EKVIAMRHEQVSGKAGRKF-----EVNPVALLEESDLLMHESFASATSYPDLDEASYRSW 596
++ R +VS A + +V A +EE + + E + D+ R
Sbjct: 1002 -RLAETRENEVSTSATDELLSQFKKVANFATMEEEETELDER--PQKDWDDIIPEEQRKK 1058
Query: 597 VEKFKEASE 605
VE+ + E
Sbjct: 1059 VEEEERQKE 1067
Score = 46 (21.3 bits), Expect = 3.4e-74, Sum P(3) = 3.4e-74
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 4 KERLQVAAKIIHDNDERDGQTP 25
K + QV+++ D+D+ DG+TP
Sbjct: 202 KRKRQVSSE--DDDDDEDGETP 221
Score = 42 (19.8 bits), Expect = 3.4e-74, Sum P(3) = 3.4e-74
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +
Sbjct: 1145 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENPGER 1203
Query: 612 AESGRRRSPEDK 623
G+RR P K
Sbjct: 1204 KGPGKRRGPTIK 1215
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 451 (163.8 bits), Expect = 4.4e-73, Sum P(2) = 4.4e-73
Identities = 116/306 (37%), Positives = 170/306 (55%)
Query: 26 VDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
V+ A V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q IS ++YL +
Sbjct: 762 VEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKV 821
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GP+L++ PLS WV E K+ P + V+ Y G + RR + Q+QM
Sbjct: 822 MGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLL----------QNQMRATK 871
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F+VLLTTY+ V+ D+ L++I W Y IIDE R+KN L VL H++ P RLL+
Sbjct: 872 ---FNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLL 928
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----S 260
TGTP+QN L ELWAL++F +PS+F + + F F +A +++ K ++ E+ T
Sbjct: 929 TGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWF-NAPFATTGEKV-ELNEEETILIIRR 986
Query: 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLALS 314
L +L F+LRR K++ VE H LP E ++ LQ+ +Y + K + LL
Sbjct: 987 LHKVLRPFLLRRLKKE-VE--H-QLPDKVEYIIKCDMSALQRVLYKHMQSKGV--LLTDG 1040
Query: 315 SRTANH 320
S H
Sbjct: 1041 SEKGKH 1046
Score = 358 (131.1 bits), Expect = 4.4e-73, Sum P(2) = 4.4e-73
Identities = 89/233 (38%), Positives = 132/233 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMTQ + I++D+L R++ Y RLDG+ +AE+R +R F+
Sbjct: 1113 TNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFN----------- 1161
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A G+D FVF++STRAGG+GLNL ADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1162 AKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLR 1221
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFD-PK 522
L+T ++VEE I+ A KL + V+ + D++ T E I LH D +
Sbjct: 1222 LMTVNSVEERILAAARYKLNMDEKVIQAGMFDQK---STGSERQQFLQTI--LHQDDNEE 1276
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNP--VALLEESDL 573
NE DD ++ + + E+ I + + + E++P L++ES+L
Sbjct: 1277 EEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESEL 1329
Score = 38 (18.4 bits), Expect = 8.1e-28, Sum P(2) = 8.1e-28
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQM 141
K+E Y E + +I T++E V EQ+ +
Sbjct: 737 KVEDDEYRTEEQTYYSIAHTIHEKVVEQASI 767
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 470 (170.5 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 106/279 (37%), Positives = 162/279 (58%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++GL+WL Y G+N +L DEMGLGKT+Q+IS ++YL + GPFLV+ P
Sbjct: 841 KLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPA 900
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ +F PKL+ + Y G + R+ +R+ K + N PF V++T+
Sbjct: 901 STLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCR--KNMTYDENS---PFHVVVTS 955
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +V++D + + W Y I+DEAQ +K+ SS + L F RLL+TGTPIQN +
Sbjct: 956 YQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLA-FKCRNRLLLTGTPIQNTMQ 1014
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
ELWAL+HF MPS+F + N+F F + S + ++Q L IL FMLRR K+
Sbjct: 1015 ELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKK 1074
Query: 276 KLV-ECGHLMLPPL-TEITVLQKKVYASILRK-ELPKLL 311
+ E G + + ++T QK +Y ++ R+ + +LL
Sbjct: 1075 NVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELL 1113
Score = 313 (115.2 bits), Expect = 6.1e-73, Sum P(2) = 6.1e-73
Identities = 62/144 (43%), Positives = 91/144 (63%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL++ QMT+ +D+++++L R+Y Y RLDGS + +R + + + +
Sbjct: 1446 HRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPEL-------- 1497
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
FVF++STRAGG+G+NL AADTVIFY+ DWNP +D QA+ RAHRIGQ V +
Sbjct: 1498 ----FVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFI 1553
Query: 466 TEHTVEEVIMRRAERKLRLSHNVV 489
T T+EE I+ RA+ K + V+
Sbjct: 1554 TRGTIEERIVIRAKEKEEVQKVVI 1577
Score = 47 (21.6 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 291 ITVLQKKVYASILRKELPKLLALSSRTANHQS 322
+ LQ++V I RKE+P++ + + ++S
Sbjct: 619 VETLQQQVIKEIARKEIPRVYKIIQQNQYNRS 650
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 743 (266.6 bits), Expect = 1.7e-72, P = 1.7e-72
Identities = 204/644 (31%), Positives = 330/644 (51%)
Query: 13 IIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA 72
++ D +E D + + + +KP+Q+EGL+WL + Y +N +L DEMGLGKTLQ
Sbjct: 299 LLKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQT 357
Query: 73 ISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMY 132
IS L YL+F++ +++CP S D W E+ K+ ++ +Y G ++QR+ + R +
Sbjct: 358 ISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLL 417
Query: 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNV 192
H S+ FDVLLTTY++V+ D+ L I W + +IDEA R+KN SVL +
Sbjct: 418 -H-------SD-----FDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSS 464
Query: 193 LREHFLMPR-RLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR 251
+R FL RLL+TGTP+ NNL ELW+L++F MP +F +F + F + S++ K+
Sbjct: 465 VR--FLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQ 522
Query: 252 GKIKEQF-TSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKL 310
+I Q T LK + + +Q L + + ++ LQKK+Y+ IL K + L
Sbjct: 523 SEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYI--FVGMSKLQKKLYSDILSKNIDVL 580
Query: 311 LALSS-------------RTANHQSLQN--------------TASGXXXXXXXXXXXXYN 343
A++ + NH L + SG
Sbjct: 581 NAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLPRLKK 640
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
RVLLF+QMT+ LDI+ D+ + Y Y R+DGS +ER I F+ ++ Y
Sbjct: 641 ENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNS---KY-- 695
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
F+F++STRAGG+G+NL AD VI ++ D+NPQ+D QA+ RAHRIGQ V+
Sbjct: 696 ------FIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYR 749
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVD-REVKERTAVETDDLRSIIFGL-HLFDP 521
VT+++VEE I+ RA +KL+L ++ ++ KE E D+ + FG ++
Sbjct: 750 FVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILN--FGAPEVYKT 807
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
+ I++ +D+ + L ++ I + E+ F++ ++L + L M+
Sbjct: 808 QDISSISDEDIDII-LADAEKRTIEI--EKKLKNLENIFDLTNISL--DGGLNMYNDLEK 862
Query: 582 ATSYPDLDEA-SYRSWVEKFKEASESSSNTIAESGRRRSPEDKQ 624
S DE S S E E S +++ + E+G ++ + K+
Sbjct: 863 EASEESTDEEDSSGSGEETILEGS-GNNDIVEENGVKKKKKKKK 905
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 743 (266.6 bits), Expect = 1.7e-72, P = 1.7e-72
Identities = 204/644 (31%), Positives = 330/644 (51%)
Query: 13 IIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA 72
++ D +E D + + + +KP+Q+EGL+WL + Y +N +L DEMGLGKTLQ
Sbjct: 299 LLKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQT 357
Query: 73 ISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMY 132
IS L YL+F++ +++CP S D W E+ K+ ++ +Y G ++QR+ + R +
Sbjct: 358 ISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLL 417
Query: 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNV 192
H S+ FDVLLTTY++V+ D+ L I W + +IDEA R+KN SVL +
Sbjct: 418 -H-------SD-----FDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSS 464
Query: 193 LREHFLMPR-RLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR 251
+R FL RLL+TGTP+ NNL ELW+L++F MP +F +F + F + S++ K+
Sbjct: 465 VR--FLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDNKQ 522
Query: 252 GKIKEQF-TSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKL 310
+I Q T LK + + +Q L + + ++ LQKK+Y+ IL K + L
Sbjct: 523 SEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYI--FVGMSKLQKKLYSDILSKNIDVL 580
Query: 311 LALSS-------------RTANHQSLQN--------------TASGXXXXXXXXXXXXYN 343
A++ + NH L + SG
Sbjct: 581 NAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLDKLLPRLKK 640
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
RVLLF+QMT+ LDI+ D+ + Y Y R+DGS +ER I F+ ++ Y
Sbjct: 641 ENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNS---KY-- 695
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
F+F++STRAGG+G+NL AD VI ++ D+NPQ+D QA+ RAHRIGQ V+
Sbjct: 696 ------FIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYR 749
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVD-REVKERTAVETDDLRSIIFGL-HLFDP 521
VT+++VEE I+ RA +KL+L ++ ++ KE E D+ + FG ++
Sbjct: 750 FVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILN--FGAPEVYKT 807
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
+ I++ +D+ + L ++ I + E+ F++ ++L + L M+
Sbjct: 808 QDISSISDEDIDII-LADAEKRTIEI--EKKLKNLENIFDLTNISL--DGGLNMYNDLEK 862
Query: 582 ATSYPDLDEA-SYRSWVEKFKEASESSSNTIAESGRRRSPEDKQ 624
S DE S S E E S +++ + E+G ++ + K+
Sbjct: 863 EASEESTDEEDSSGSGEETILEGS-GNNDIVEENGVKKKKKKKK 905
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 744 (267.0 bits), Expect = 2.6e-72, P = 2.6e-72
Identities = 211/627 (33%), Positives = 318/627 (50%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 486 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 545
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 546 VVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 598
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 599 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQ 657
Query: 212 NNLSELWALMHFCMPSVF----------G--------TLNQFLSTF------KDAVHSSS 247
N+L ELW+L+HF MP F G +L++ L F KD S
Sbjct: 658 NSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLP 717
Query: 248 APKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKEL 307
A ++ + ++L+ ++L R + L + I + KK
Sbjct: 718 AKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIRA 777
Query: 308 PKLLALSSRTANHQSLQNT--ASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFL 365
P+ S R + LQ+ +SG G+RVL+F+QM + LDIL ++L
Sbjct: 778 PED---SERETGQEVLQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYL 834
Query: 366 ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425
++ Y ++RLDGSI+ E R A+ HF+ A G++ F F++STRAGG+G+NL
Sbjct: 835 TIKHYPFQRLDGSIKGEIRKQALDHFN-----------ADGSEDFCFLLSTRAGGLGINL 883
Query: 426 VAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLS 485
+ADTV+ ++ DWNPQ D QA RAHRIGQ V LVT+ TVEE I+ RA++K+ L
Sbjct: 884 ASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 943
Query: 486 HNVVGD-DVVDREVKERTAVET-------DDLRSII-FGLH-LFDPKAINNEESDDLRLS 535
H V+ D R V E + + ++L +I+ FG LF K I EES+ +
Sbjct: 944 HLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLF--KEIEGEESEPQEMD 1001
Query: 536 GLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
+++++ + R+ EV+ A E +FA+ +L+E ++
Sbjct: 1002 -----IDEILRLAET-------RENEVSTSATDELLSQFKVANFATMEDEEELEERPHKD 1049
Query: 596 WVEKFKEASESSSNTIAESGRRRSPED 622
W E E + E R++ E+
Sbjct: 1050 WDEIIPEEQRKK---VEEEERQKELEE 1073
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 739 (265.2 bits), Expect = 5.0e-72, P = 5.0e-72
Identities = 207/577 (35%), Positives = 307/577 (53%)
Query: 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93
T +L+ +Q+EGL+W++ + G + +L DEMGLGKT+Q+IS L+ L GP+LV+
Sbjct: 402 THKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVV 461
Query: 94 PLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLL 153
PLS W E A++ P++ ++ Y+G+ R IR+ YE + + + +L
Sbjct: 462 PLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQ--YEWF-----VGGTKKMKINAIL 514
Query: 154 TTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
TTY+++L D+ FLS I W ++DEA RLKN S+LY L + F +LL+TGTP+QN+
Sbjct: 515 TTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQ-FRFNHKLLITGTPLQNS 573
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT--SLKGILSAFMLR 271
L ELWAL+HF MP F +F + ++ H + K+ E F +K + +
Sbjct: 574 LKELWALLHFIMPEKFDCWEEFETAHNESNHKGISALHKKL-EPFLLRRVKKDVEKSLPP 632
Query: 272 RTKQKL-VEC-GH---LMLPPLTE-ITVLQKKVYASI-----LRKELPKLLALSSRTANH 320
+T+Q L V+ H LT+ L K V SI L EL K +S T +
Sbjct: 633 KTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQY 692
Query: 321 QSLQNTASGXXXXXXXXXXXXY----------NSGHRVLLFAQMTQTLDILQDFLELRKY 370
+ + A G + GHRVL+F+QM LDILQ++L+LR++
Sbjct: 693 DHIYDDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRF 752
Query: 371 SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADT 430
+RLDGS+RA+ R A+ H Y+ G D F F++STRAGG+G+NL ADT
Sbjct: 753 PSQRLDGSMRADLRKQALDH----------YNAPGSTD-FAFLLSTRAGGLGINLATADT 801
Query: 431 VIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV- 489
VI ++ DWNPQ D QA+ RAHRIGQ V LVT+ +VEE I+ RA+RKL L H V+
Sbjct: 802 VIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQ 861
Query: 490 -----GDDVVDREVKERTAVETD--DLRSII-FG-LHLFDPKAINNEESD---DLRLSGL 537
G V+ + +V D +L +I+ FG + LF K +E + D L G
Sbjct: 862 RMDTTGKTVLSKNATASGSVPFDKQELSAILKFGAVELFKEKEGEEQEPEVDIDRILMGA 921
Query: 538 NSM-VEKVIAMRHEQVSGKAGRKFEVNPVALLEESDL 573
+ E+ + +E +S F+ A+ EE D+
Sbjct: 922 ETREAEEEVMKENELLSS-----FKYANFAIDEEKDI 953
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 457 (165.9 bits), Expect = 5.5e-72, Sum P(2) = 5.5e-72
Identities = 106/261 (40%), Positives = 158/261 (60%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++G+ WLI + G+N +L D+MGLGKT+Q I FLS+LK + + GP+LV+ PL
Sbjct: 201 QLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLD-GPYLVIAPL 259
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +E+A+FTP + + Y G++ QR +RR +H+ + V P F +++T+
Sbjct: 260 STLSNWFNEIARFTPSINAIIYHGDKNQRDELRR---KHMPK-----TVGP-KFPIVITS 310
Query: 156 YDVVLMD-QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNL 214
Y+V + D + L PW Y +IDE RLKN L L+ H M +LL+TGTP+QNNL
Sbjct: 311 YEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELK-HLKMDNKLLLTGTPLQNNL 369
Query: 215 SELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSSAPKRGKIKEQ---FTSLKGILSAFML 270
SELW+L++F +P +F + ++F S F + + A K + K + + L GIL F+L
Sbjct: 370 SELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFIL 429
Query: 271 RRTKQKLVECGHLMLPPLTEI 291
RR K VE L LP EI
Sbjct: 430 RRMKCD-VE---LSLPRKKEI 446
Score = 321 (118.1 bits), Expect = 5.5e-72, Sum P(2) = 5.5e-72
Identities = 71/193 (36%), Positives = 112/193 (58%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ + H+VL+F+Q T+ LDI+ + + + R+DGS++ +ER I+ FS + +
Sbjct: 537 FANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKS----- 591
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+F++STRAGG+G+NL AADT I Y+ DWNPQ+D QA+ R HRIGQ V
Sbjct: 592 ------SCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 645
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-VKERTAVETDDLRSIIFGLHLFD 520
L T ++E +++RA KL+L H V+G +E K T +E +D+ +++ +
Sbjct: 646 YRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDILALLKEDETAE 705
Query: 521 PKAINNEESD-DL 532
K I + SD DL
Sbjct: 706 DKLIQTDISDADL 718
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 429 (156.1 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 481 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 540
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 541 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 593
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQ 652
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 653 NSLKELWSLLHFIMPEKF 670
Score = 364 (133.2 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
Identities = 97/268 (36%), Positives = 149/268 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 809 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 857
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 858 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 917
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 918 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 977
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 978 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1023
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKE 602
+FA+ +L+E ++ W E E
Sbjct: 1024 KVANFATMEDEEELEERPHKDWDEIIPE 1051
Score = 263 (97.6 bits), Expect = 9.7e-53, Sum P(2) = 9.7e-53
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 573 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 629
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 630 LLYKTLID-FKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 680
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 681 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 736
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 737 RNY-KALAKGTR 747
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 429 (156.1 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 461 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 520
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 521 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 573
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 574 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQ 632
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 633 NSLKELWSLLHFIMPEKF 650
Score = 371 (135.7 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 101/288 (35%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 789 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 837
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 838 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 897
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 898 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 957
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 958 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1003
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +LDE ++ W E E + E R++ E+
Sbjct: 1004 KVANFATMEDEEELDERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1048
Score = 263 (97.6 bits), Expect = 8.4e-53, Sum P(2) = 8.4e-53
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 553 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 609
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 610 LLYKTLID-FKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 660
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 661 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 716
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 717 RNY-KALAKGTR 727
Score = 41 (19.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1123 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1181
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1182 KGPGKKRGPTIK 1193
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 429 (156.1 bits), Expect = 4.1e-71, Sum P(2) = 4.1e-71
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 479 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 538
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 539 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 591
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSHHRLLITGTPLQ 650
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 651 NSLKELWSLLHFIMPEKF 668
Score = 367 (134.2 bits), Expect = 4.1e-71, Sum P(2) = 4.1e-71
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 807 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 855
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 856 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 915
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 916 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 975
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 976 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1021
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1022 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1066
Score = 263 (97.6 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 571 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 627
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 628 LLYKTLID-FKSHHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 678
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 679 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 734
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 735 RNY-KALAKGTR 745
Score = 41 (19.5 bits), Expect = 8.0e-37, Sum P(2) = 8.0e-37
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1141 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1199
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1200 KGPGKKRGPTIK 1211
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 429 (156.1 bits), Expect = 7.8e-71, Sum P(2) = 7.8e-71
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 448 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 507
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 508 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 560
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 561 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSHHRLLITGTPLQ 619
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 620 NSLKELWSLLHFIMPEKF 637
Score = 367 (134.2 bits), Expect = 7.8e-71, Sum P(2) = 7.8e-71
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 776 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 824
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 825 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 884
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 885 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 944
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 945 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 990
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 991 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1035
Score = 263 (97.6 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 540 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 596
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 597 LLYKTLID-FKSHHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 647
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 648 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 703
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 704 RNY-KALAKGTR 714
Score = 41 (19.5 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1110 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1168
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1169 KGPGKKRGPTIK 1180
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 429 (156.1 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 482 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 541
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 542 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 594
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 595 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSHHRLLITGTPLQ 653
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 654 NSLKELWSLLHFIMPEKF 671
Score = 367 (134.2 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 810 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 858
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 859 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 918
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 919 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 978
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 979 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1024
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1025 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1069
Score = 263 (97.6 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 574 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 630
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 631 LLYKTLID-FKSHHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 681
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 682 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 737
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 738 RNY-KALAKGTR 748
Score = 41 (19.5 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1144 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1202
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1203 KGPGKKRGPTIK 1214
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 429 (156.1 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 481 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 540
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 541 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 593
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 594 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQ 652
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 653 NSLKELWSLLHFIMPEKF 670
Score = 367 (134.2 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 809 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 857
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 858 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 917
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 918 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 977
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 978 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1023
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1024 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1068
Score = 263 (97.6 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 573 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 629
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 630 LLYKTLID-FKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 680
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 681 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 736
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 737 RNY-KALAKGTR 747
Score = 41 (19.5 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1143 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1201
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1202 KGPGKKRGPTIK 1213
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 429 (156.1 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 492 GENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 551
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 552 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 604
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 605 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSHHRLLITGTPLQ 663
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 664 NSLKELWSLLHFIMPEKF 681
Score = 367 (134.2 bits), Expect = 1.0e-70, Sum P(2) = 1.0e-70
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 820 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 868
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 869 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 928
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 929 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 988
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 989 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1034
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1035 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1079
Score = 263 (97.6 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 584 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 640
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 641 LLYKTLID-FKSHHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 691
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 692 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 747
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 748 RNY-KALAKGTR 758
Score = 41 (19.5 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1154 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1212
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1213 KGPGKKRGPTIK 1224
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 416 (151.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 86/200 (43%), Positives = 123/200 (61%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q++G++WL + +V+L DEMGLGKT+Q ISFLSYL GPF+V+ PL
Sbjct: 488 ELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPL 547
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E + P + V+ Y+G+ R+ IR YE + Q++ + F+ LLTT
Sbjct: 548 STLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRD--YEWINPQTKR-----IKFNALLTT 600
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+G L I W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 601 YEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLID-FRSNHRLLITGTPLQNSLK 659
Query: 216 ELWALMHFCMPSVFGTLNQF 235
ELW+L+HF M F + F
Sbjct: 660 ELWSLLHFLMSDKFESWEDF 679
Score = 382 (139.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 101/288 (35%), Positives = 157/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL D+L +++Y ++RLDGSI+ E R A+ HF+ +
Sbjct: 812 GNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAE---------- 861
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 862 -GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 920
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V + ++ + ++L +I+ FG
Sbjct: 921 VTKGTVEEDIIERAKKKMVLDHLVIQRMDTTGRTVLDNSSANSNSNPFNKEELSAILKFG 980
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K EES+ + +++++ + + S + + LL + +
Sbjct: 981 AEDLF--KEAEGEESEPQEMD-----IDEILRLAETRESDQGSSATD----ELLSQFKVA 1029
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+F S PDLDE R W E E + E +++ ED
Sbjct: 1030 ---NFTMDESTPDLDEKPGRDWDEIIPEEQRRK---VEEEQKQKEMED 1071
Score = 244 (91.0 bits), Expect = 4.5e-52, Sum P(2) = 4.5e-52
Identities = 62/173 (35%), Positives = 97/173 (56%)
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+ F+ LLTTY+++L D+G L I W + +DEA RLKN S+LY L + F RLL+T
Sbjct: 592 IKFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLID-FRSNHRLLIT 650
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-FTSLKGIL 265
GTP+QN+L ELW+L+HF M F + F +D + GK ++ + SL +L
Sbjct: 651 GTPLQNSLKELWSLLHFLMSDKFESWEDF----ED--------EHGKGRDNGYQSLHKVL 698
Query: 266 SAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K+ + + + + +++ QK+ Y IL + K L+ +R
Sbjct: 699 EPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTRNF-KALSKGTR 750
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 429 (156.1 bits), Expect = 1.3e-70, Sum P(2) = 1.3e-70
Identities = 88/198 (44%), Positives = 122/198 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G EL+ +Q+EGL+WL + +V+L DEMGLGKT+Q ISFLSYL GPFL+
Sbjct: 479 GENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLI 538
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 539 VVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFNA 591
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+Q
Sbjct: 592 LITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQ 650
Query: 212 NNLSELWALMHFCMPSVF 229
N+L ELW+L+HF MP F
Sbjct: 651 NSLKELWSLLHFIMPEKF 668
Score = 366 (133.9 bits), Expect = 1.3e-70, Sum P(2) = 1.3e-70
Identities = 99/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 807 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 855
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 856 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 915
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R + E + + ++L +I+ FG
Sbjct: 916 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFG 975
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 976 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1021
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1022 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1066
Score = 263 (97.6 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 571 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 627
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 628 LLYKTLID-FKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 678
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 679 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 734
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 735 RNY-KALAKGTR 745
Score = 44 (20.5 bits), Expect = 9.4e-37, Sum P(2) = 9.4e-37
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1141 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1199
Query: 612 AESGRRRSPEDK 623
G+RR P K
Sbjct: 1200 KGPGKRRGPTIK 1211
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 728 (261.3 bits), Expect = 1.4e-70, P = 1.4e-70
Identities = 207/581 (35%), Positives = 304/581 (52%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQMSPGPFL 90
G+T L+ +Q++GL+WL+ + +V+L DEMGLGKT+Q I FL S K + GPFL
Sbjct: 525 GLT--LRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLY-GPFL 581
Query: 91 VLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFD 150
+ PLS W E + P + V+ Y+G+ + R I++ YE E S+ L F+
Sbjct: 582 CVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQ--YEWQFESSKR-----LKFN 634
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
+LTTY++VL D+ FL + W ++DEA RLKN S+LY L+E F RLL+TGTP+
Sbjct: 635 CILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKE-FDTNHRLLITGTPL 693
Query: 211 QNNLSELWALMHFCMPSVFGT------------------LNQFLSTF------KDAVHSS 246
QN+L ELWAL+HF MP F T L+Q L + KD S
Sbjct: 694 QNSLKELWALLHFIMPDKFDTWENFEVQHGNAEDKGYTRLHQQLEPYILRRVKKDVEKSL 753
Query: 247 SAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKV--YASILR 304
A ++ + TSL+ ++L + L + I + KK +A+++R
Sbjct: 754 PAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIR 813
Query: 305 KELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDF 364
+L+ L A L+ SG +GHRVL+F+QM + LD+L D+
Sbjct: 814 PSEFELMGLQQDEALQTLLKG--SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADY 871
Query: 365 LELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLN 424
L+ R + ++RLDGSI+ E R A+ HF+ + G+ F F++STRAGG+G+N
Sbjct: 872 LQKRHFPFQRLDGSIKGEMRRQALDHFNAE-----------GSQDFCFLLSTRAGGLGIN 920
Query: 425 LVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRL 484
L ADTVI ++ DWNPQ D QA RAHRIGQ N V LVT +VEE I+ RA++K+ L
Sbjct: 921 LATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVL 980
Query: 485 SHNVV------GDDVVDREVKERTA----VETDDLRSII-FGLH-LFDPKAINNEESDDL 532
H V+ G V+D+ ++ DDL +I+ FG LF + E DDL
Sbjct: 981 DHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSAILKFGAEELFKDE---QEHDDDL 1037
Query: 533 RLSGLNSMVEKVIAMRHEQVSGKAG---RKFEVNPVALLEE 570
+ ++ ++ + R+E A F+V +A EE
Sbjct: 1038 -VCDIDEILRRA-ETRNEDPEMPADDLLSAFKVASIAAFEE 1076
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 417 (151.9 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 162 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 221
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 222 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 269
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 270 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 328
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 329 LWALLNFLLPDVFNSADDFDSWF 351
Score = 371 (135.7 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
Identities = 103/268 (38%), Positives = 148/268 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEER---FAAIRHFSVQSAIERLY 401
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER F + + AIE
Sbjct: 481 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF- 539
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
A + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 540 -NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 598
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLF 519
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F
Sbjct: 599 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMIRHGATHVF 656
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESF 579
K +E +D+ ++ + EK A +E++ K G N +E+S L E
Sbjct: 657 ASK--ESELTDE-DITTILERGEKKTAEMNERLQ-KMGESSLRNFRMDIEQS-LYKFEG- 710
Query: 580 ASATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 711 ---EDYREKQKLGMVEWIEPPKRERKAN 735
Score = 255 (94.8 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 259 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 317
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 318 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 370
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 371 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 417
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 417 (151.9 bits), Expect = 1.9e-70, Sum P(2) = 1.9e-70
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 290
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 291 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 349
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 350 LWALLNFLLPDVFNSADDFDSWF 372
Score = 371 (135.7 bits), Expect = 1.9e-70, Sum P(2) = 1.9e-70
Identities = 103/268 (38%), Positives = 148/268 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEER---FAAIRHFSVQSAIERLY 401
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER F + + AIE
Sbjct: 502 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAF- 560
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
A + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 561 -NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 619
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLF 519
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F
Sbjct: 620 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMIRHGATHVF 677
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESF 579
K +E +D+ ++ + EK A +E++ K G N +E+S L E
Sbjct: 678 ASK--ESELTDE-DITTILERGEKKTAEMNERLQ-KMGESSLRNFRMDIEQS-LYKFEG- 731
Query: 580 ASATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 732 ---EDYREKQKLGMVEWIEPPKRERKAN 756
Score = 255 (94.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 280 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 338
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 339 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 391
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 392 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 438
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 714 (256.4 bits), Expect = 3.2e-70, P = 3.2e-70
Identities = 193/546 (35%), Positives = 289/546 (52%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + T +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 153 DSPSYVKTGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 212
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRN-IRRTMYEHVKEQSQMSNVS 145
GP +VL P S W++E ++ P L+ + +G+RE+R IR T+
Sbjct: 213 GPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIGDREERTAFIRDTLL------------- 259
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y+++++++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 260 PGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLL 318
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF--KDAVHSSSAPKR-GKIKEQFT--S 260
TGTP+QNNL ELWAL++F +P VF + F + F + + + +R + F
Sbjct: 319 TGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRR 378
Query: 261 LKGILSAFMLRRTKQKL-VECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSS---R 316
+K + +L + + K+ V + T+I + + S + + +LL + +
Sbjct: 379 IKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRK 438
Query: 317 TANHQSLQNTA---------------SGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDIL 361
NH L + A SG G RVL+F+QMT+ LDIL
Sbjct: 439 CCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDIL 498
Query: 362 QDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421
+D+ R Y Y RLDG EER +I F+ ++ + F+FM+STRAGG+
Sbjct: 499 EDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSK-----------FLFMLSTRAGGL 547
Query: 422 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481
G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V +T++TVEE I+ RAE K
Sbjct: 548 GINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMK 607
Query: 482 LRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDPKA--INNEESDDLRLSG 536
LRL V+ +VD + + + D++ SII G H+F K I +E+ D + G
Sbjct: 608 LRLDSIVIQQGRLVDPSMNK---LGKDEMLSIIRHGATHVFASKESEITDEDIDGILERG 664
Query: 537 LNSMVE 542
+E
Sbjct: 665 ERKTME 670
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 423 (154.0 bits), Expect = 4.8e-70, Sum P(2) = 4.8e-70
Identities = 89/199 (44%), Positives = 122/199 (61%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVN-VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFL 90
G EL+ +Q+EGL+WL + N V+L DEMGLGKT+Q ISFLSYL GPFL
Sbjct: 467 GENLELRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL 526
Query: 91 VLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFD 150
++ PLS W E + P++ V+ Y+G+ R IR YE + Q++ L F+
Sbjct: 527 IVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIRE--YEWIHSQTKR-----LKFN 579
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
L+TTY+++L D+ L I W + +DEA RLKN S+LY L + F RLL+TGTP+
Sbjct: 580 ALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPL 638
Query: 211 QNNLSELWALMHFCMPSVF 229
QN+L ELW+L+HF MP F
Sbjct: 639 QNSLKELWSLLHFIMPEKF 657
Score = 367 (134.2 bits), Expect = 4.8e-70, Sum P(2) = 4.8e-70
Identities = 100/288 (34%), Positives = 156/288 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L ++ Y ++RLDGSI+ E R A+ HF+ A
Sbjct: 796 GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN-----------A 844
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 845 DGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 904
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVET-------DDLRSII-FG 515
VT+ TVEE I+ RA++K+ L H V+ D R V E + + ++L +I+ FG
Sbjct: 905 VTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFG 964
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLL 574
LF K + EES+ + +++++ + R+ EV+ A E
Sbjct: 965 AEDLF--KELEGEESEPQEMD-----IDEILRLAET-------RENEVSTSATDELLSQF 1010
Query: 575 MHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
+FA+ +L+E ++ W E E + E R++ E+
Sbjct: 1011 KVANFATMEDEEELEERPHKDWDEIIPEEQRKK---VEEEERQKELEE 1055
Score = 263 (97.6 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 72/192 (37%), Positives = 106/192 (55%)
Query: 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187
R T+ E+ SQ L F+ L+TTY+++L D+ L I W + +DEA RLKN S
Sbjct: 560 RNTIREYEWIHSQTKR---LKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDS 616
Query: 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247
+LY L + F RLL+TGTP+QN+L ELW+L+HF MP F +F F++ H
Sbjct: 617 LLYKTLID-FKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF----EFWEDFEED-H--- 667
Query: 248 APKRGKIKEQ-FTSLKGILSAFMLRRTKQKLVECGHLMLPPL--TEITVLQKKVYASILR 304
GK +E + SL +L F+LRR K+ + + + + E++ LQK+ Y IL
Sbjct: 668 ----GKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILT 723
Query: 305 KELPKLLALSSR 316
+ K LA +R
Sbjct: 724 RNY-KALAKGTR 734
Score = 41 (19.5 bits), Expect = 9.3e-36, Sum P(2) = 9.3e-36
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 555 KAGRKFEVNPVALLE--ESDL-LMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTI 611
KA +KF + P+ LE D L+ +S A +L S S +++++E + +++
Sbjct: 1130 KAYKKFGL-PLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEG 1188
Query: 612 AESGRRRSPEDK 623
G++R P K
Sbjct: 1189 KGPGKKRGPTIK 1200
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 417 (151.9 bits), Expect = 6.6e-70, Sum P(2) = 6.6e-70
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 353 LWALLNFLLPDVFNSADDFDSWF 375
Score = 359 (131.4 bits), Expect = 6.6e-70, Sum P(2) = 6.6e-70
Identities = 100/265 (37%), Positives = 145/265 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER AI F+V ++
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNS-------- 556
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 557 ---SRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 613
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F K
Sbjct: 614 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGATHVFASK 671
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASA 582
+E +D+ ++ L E+ A +E++ K G + + E L E
Sbjct: 672 --ESELTDE-DITTLLERGERKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG---- 722
Query: 583 TSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 723 EDYREKQKLGMVEWIEPPKRERKAN 747
Score = 255 (94.8 bits), Expect = 6.8e-52, Sum P(2) = 6.8e-52
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 283 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 341
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 394
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 395 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 441
Score = 38 (18.4 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHES--FASATSYPDLDEASYRSWVEKFKEASESS 607
E++ +A K ++ + ++++ L+ +S A + + + K E ++
Sbjct: 621 ERIVERAEIKLRLDSI-VIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDED 679
Query: 608 SNTIAESGRRRSPE 621
T+ E G R++ E
Sbjct: 680 ITTLLERGERKTAE 693
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 416 (151.5 bits), Expect = 8.0e-70, Sum P(2) = 8.0e-70
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 163 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKS 222
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 223 TLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIR------------DEMMPGEWDVCVTSY 270
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 271 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 329
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 330 LWALLNFLLPDVFNSADDFDSWF 352
Score = 366 (133.9 bits), Expect = 8.0e-70, Sum P(2) = 8.0e-70
Identities = 106/271 (39%), Positives = 150/271 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRH----FSVQSAIERL 400
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER H FS + AIE
Sbjct: 482 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTE-AIEAF 540
Query: 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460
A + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 541 --NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 598
Query: 461 SINLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HL 518
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+
Sbjct: 599 VFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMIRHGATHV 656
Query: 519 FDPKAINNEESDDLRLSGLNSMVEKVIAMRHE-QVSGKAG-RKFEVNPVALLEESDLLMH 576
F K +E +D+ ++ L +K M Q G++ R F ++ LE+S L
Sbjct: 657 FACK--ESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMD----LEQS-LYKF 709
Query: 577 ESFASATSYPDLDEASYRSWVEKFKEASESS 607
E Y + + W+E K +++
Sbjct: 710 EG----EDYREKQKLGTVEWIEPPKRERKAN 736
Score = 255 (94.8 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 260 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 318
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 319 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 371
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 372 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 418
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 417 (151.9 bits), Expect = 1.0e-69, Sum P(2) = 1.0e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 353 LWALLNFLLPDVFNSADDFDSWF 375
Score = 364 (133.2 bits), Expect = 1.0e-69, Sum P(2) = 1.0e-69
Identities = 100/268 (37%), Positives = 145/268 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEER---FAAIRHFSVQSAIERLY 401
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER F + + AIE
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF- 563
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+ F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 564 -NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 622
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLF 519
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F
Sbjct: 623 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGATHVF 680
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESF 579
K +E +D+ ++ L E+ A +E++ K G + + E L E
Sbjct: 681 ASK--ESELTDE-DITTLLERGERKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG- 734
Query: 580 ASATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 735 ---EDYREKQKLGMVEWIEPPKRERKAN 759
Score = 255 (94.8 bits), Expect = 6.8e-52, Sum P(2) = 6.8e-52
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 283 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 341
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 394
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 395 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 441
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHES--FASATSYPDLDEASYRSWVEKFKEASESS 607
E++ +A K ++ + ++++ L+ +S A + + + K E ++
Sbjct: 633 ERIVERAEIKLRLDSI-VIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDED 691
Query: 608 SNTIAESGRRRSPE 621
T+ E G R++ E
Sbjct: 692 ITTLLERGERKTAE 705
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 417 (151.9 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 353 LWALLNFLLPDVFNSADDFDSWF 375
Score = 364 (133.2 bits), Expect = 1.1e-69, Sum P(2) = 1.1e-69
Identities = 100/268 (37%), Positives = 145/268 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEER---FAAIRHFSVQSAIERLY 401
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER F + + AIE
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAF- 563
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+ F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 564 -NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 622
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLF 519
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F
Sbjct: 623 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGATHVF 680
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESF 579
K +E +D+ ++ L E+ A +E++ K G + + E L E
Sbjct: 681 ASK--ESELTDE-DITTLLERGERKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG- 734
Query: 580 ASATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 735 ---EDYREKQKLGMVEWIEPPKRERKAN 759
Score = 255 (94.8 bits), Expect = 7.2e-52, Sum P(2) = 7.2e-52
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 283 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 341
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 394
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 395 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 441
Score = 38 (18.4 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHES--FASATSYPDLDEASYRSWVEKFKEASESS 607
E++ +A K ++ + ++++ L+ +S A + + + K E ++
Sbjct: 633 ERIVERAEIKLRLDSI-VIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDED 691
Query: 608 SNTIAESGRRRSPE 621
T+ E G R++ E
Sbjct: 692 ITTLLERGERKTAE 705
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 708 (254.3 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 186/543 (34%), Positives = 279/543 (51%)
Query: 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93
+ E++ +Q+ GL+W+I Y G+N +L DEMGLGKTLQ IS L YLK + GP +V+
Sbjct: 125 SGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIV 184
Query: 94 PLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLL 153
P S WV+E K+ P L + +G+++ R R + + P +DV +
Sbjct: 185 PKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDV------------LMPGEWDVCV 232
Query: 154 TTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
T+Y++ + ++ + W Y +IDEA R+KN S L +LRE F RLL+TGTP+QNN
Sbjct: 233 TSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILRE-FKTANRLLITGTPLQNN 291
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAV---HSSSAPKRGKIKEQFT--SLKGILSAF 268
L ELWAL++F +P VF + F F + + + + F LK +
Sbjct: 292 LHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKR 351
Query: 269 MLRRTKQKL-VECGHLMLPPLTEITVLQKKVY---ASILRKELPKLLALSSRTANHQSLQ 324
+ + + K+ V + T++ + V + + L +L + NH L
Sbjct: 352 LKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLF 411
Query: 325 NTA---------------SGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRK 369
+ A SG G RVL+F+QMT+ LDIL+D+ R
Sbjct: 412 DGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRN 471
Query: 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAAD 429
Y+Y RLDG E+R I+ F++ ++ + F+FM+STRAGG+G+NL AD
Sbjct: 472 YNYCRLDGQTPHEDRNRQIQEFNMDNSAK-----------FLFMLSTRAGGLGINLATAD 520
Query: 430 TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV 489
VI Y+ DWNPQ+D QA+ RAHRIGQ V L+TE TVEE I+ RAE KLRL V+
Sbjct: 521 VVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVI 580
Query: 490 -GDDVVDREVKERTAVETDDLRSII-FGLH-LFDPKA--INNEESDDLRLSGLNSMVEKV 544
G +VD + + D++ +II FG + +F K I +E+ D + G E+
Sbjct: 581 QGGRLVDNRSNQ---LNKDEMLNIIRFGANQVFSSKETDITDEDIDVILERGEAKTAEQK 637
Query: 545 IAM 547
A+
Sbjct: 638 AAL 640
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 426 (155.0 bits), Expect = 1.7e-69, Sum P(2) = 1.7e-69
Identities = 102/283 (36%), Positives = 156/283 (55%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q+ GL W++ Y +N +L DEMGLGKT+Q+IS ++YL + GPFLV+
Sbjct: 466 VGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVI 525
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P L + Y G QR ++ +H Q ++ N FDVL
Sbjct: 526 VPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSL-----QH---QIRVGN-----FDVL 572
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ LS+ W + IIDE R+KN S L + ++ RL++TGTP+QN
Sbjct: 573 LTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQN 632
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
NL ELWAL++F +P +F + F F ++ ++ ++ E+ T L +L
Sbjct: 633 NLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRP 692
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILR 304
F+LRR K++ VE LP E + LQ+++Y +L+
Sbjct: 693 FLLRRLKKE-VEKD---LPDKVEKVIKCKLSGLQQQLYQQMLK 731
Score = 355 (130.0 bits), Expect = 1.7e-69, Sum P(2) = 1.7e-69
Identities = 94/238 (39%), Positives = 129/238 (54%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
SGHRVL+F QMTQ +DI++DFL ++ Y RLDGS + EER + F+
Sbjct: 806 SGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFN----------- 854
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A +D F F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 855 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 914
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDD-LRSIIFGLHLFDPK 522
L+T +VEEVI+ RA +KL + V+ D + TA E + LR +I D
Sbjct: 915 LITTDSVEEVILERAMQKLDIDGKVIQAGKFDNK---STAEEQEAFLRRLIESETNRDDD 971
Query: 523 AINNEESDDLRLSGLNSMVEKVI-------AMRHEQVSGKAGRKFEVNPVALLEESDL 573
+ D+L + S EK++ M E+ KA + V P L++ +L
Sbjct: 972 DKAELDDDELNDTLARSADEKILFDKIDKERMNQERADAKA-QGLRVPPPRLIQLDEL 1028
Score = 48 (22.0 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 532 LRLSGLNSMVEKVI--AMRHEQVSGK---AGRKFEVNPVALLEESDLLMHESFASATSYP 586
LRL +S+ E ++ AM+ + GK AG KF+ A EE + + S T+
Sbjct: 913 LRLITTDSVEEVILERAMQKLDIDGKVIQAG-KFDNKSTA--EEQEAFLRRLIESETNRD 969
Query: 587 DLDEA 591
D D+A
Sbjct: 970 DDDKA 974
Score = 41 (19.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 538 NSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRSWV 597
N +E I R E + R+ N E + L + AS TS ++ S+ + V
Sbjct: 1076 NMSLEDAIKKRRE---ARERRRLRQNGTKE-NEIETLENTPEASETSL--IENNSFTAAV 1129
Query: 598 EKFKEASESSSNTIAESGRRRSPEDKQ 624
+ E + + T A +RRS K+
Sbjct: 1130 D---EETNADKETTASRSKRRSSRKKR 1153
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 447 (162.4 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 102/295 (34%), Positives = 173/295 (58%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LK +Q++G++WL Y G++ +L DEMGLGKT+Q+I+FL ++ GPFLV+ P S
Sbjct: 535 LKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPAS 594
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W EM++F P +V+ Y G +R+ +R+ +Q + + F V++T+Y
Sbjct: 595 TLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQFW-----DQKHL-HTRDASFHVVITSY 648
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+V+ D + ++I W Y ++DEAQ +K+ +S + +L F RLL++GTPIQN+++E
Sbjct: 649 QLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLG-FSCRNRLLLSGTPIQNSMAE 707
Query: 217 LWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQK 276
LWAL+HF MP++F + ++F F + S + K G ++Q + L IL FMLRR K+
Sbjct: 708 LWALLHFIMPTLFDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKD 767
Query: 277 LVE--CGHLMLPPLTEITVLQKKVYASILRK-ELPKLLALSSRTANHQSLQNTAS 328
+ + + +T+ QK +Y ++ +K + LL L+S + S ++AS
Sbjct: 768 VENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSS-SSSAS 821
Score = 330 (121.2 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 71/168 (42%), Positives = 106/168 (63%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+++QMT+ +D+L++++ RK+ Y RLDGS + R + F ++
Sbjct: 1171 NGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRA-------- 1222
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
D FVF++STRAGG+G+NL AADTVIFY+ DWNP VD+QA+ RAHR+GQ V
Sbjct: 1223 ----DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYR 1278
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDR-EVKERTAVETDD 508
L+ + T+EE I++RA K + V+ G+ D + KE ++ DD
Sbjct: 1279 LICKGTIEERILQRAREKSEIQRMVISGGNFKPDTLKPKEVVSLLLDD 1326
Score = 42 (19.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 127 IRRTMYEHVKEQSQMSN 143
+++ + EHV+EQ Q N
Sbjct: 136 VQQLLREHVREQRQRKN 152
Score = 40 (19.1 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
Identities = 35/151 (23%), Positives = 62/151 (41%)
Query: 469 TVEEVIMRRAER----KLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
TV++ M RA R K + ++ ++ + +R +++ R +I G + F P +
Sbjct: 1256 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGN-FKPDTL 1314
Query: 525 NNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEE-------SDLLMHE 577
+E L L ++ I M++ Q K + P A E D+ M
Sbjct: 1315 KPKEVVSLLLD------DEEIEMKYRQ-EAKLQSSSPI-PAATQSERKRRHPQKDVNMGG 1366
Query: 578 SFASATSY---PDLDEASYRSWVEKFKEASE 605
+ +ATS PD D S S ++ K +E
Sbjct: 1367 TTIAATSATQNPDDDVPSCSSAAKRIKLETE 1397
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 120 EREQRRNIRRTMYEHVKEQSQMSNV 144
ER+QRR R E K+ ++ V
Sbjct: 387 ERDQRRKQEREAEEQRKQDVELIEV 411
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 416 (151.5 bits), Expect = 2.6e-69, Sum P(3) = 2.6e-69
Identities = 87/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE K+ P L + +G++EQR R + + P
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 276
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 277 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 335
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 336 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 368
Score = 362 (132.5 bits), Expect = 2.6e-69, Sum P(3) = 2.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 498 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QDSINA-YNEP 547
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 548 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 606
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 607 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 663
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 664 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 715
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 716 -EDYREKQKIAFTEWIEPPKRERKAN 740
Score = 40 (19.1 bits), Expect = 2.6e-69, Sum P(3) = 2.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 377 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 404
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 406 (148.0 bits), Expect = 2.9e-69, Sum P(2) = 2.9e-69
Identities = 88/248 (35%), Positives = 144/248 (58%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V +LK +Q++GL W++ Y +N +L DEMGLGKT+Q+IS ++YL + FL++
Sbjct: 497 VGGKLKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYL-IEKKHENKFLII 555
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P ++V+ Y G ++QRR+++ + + N F VL
Sbjct: 556 VPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDI--------RYGN-----FQVL 602
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ V+ ++ L++ + + IIDE R+KN S L LR ++ RL++TGTP+QN
Sbjct: 603 LTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQN 662
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-----FTSLKGILSA 267
NL ELWAL++F +P +F ++ F F ++ A ++ ++ E+ L +L
Sbjct: 663 NLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRP 722
Query: 268 FMLRRTKQ 275
F+LRR K+
Sbjct: 723 FLLRRLKK 730
Score = 376 (137.4 bits), Expect = 2.9e-69, Sum P(2) = 2.9e-69
Identities = 105/289 (36%), Positives = 155/289 (53%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
SGHRVL+F QMTQ +DI++DFL + Y RLDGS +AEER ++ F+
Sbjct: 835 SGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFN----------- 883
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A +D F F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 884 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 943
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKA 523
L+T +VEEVI+ RA +KL + V+ D + TA E + + + L D
Sbjct: 944 LITNDSVEEVILERAHQKLDIDGKVIQAGKFDNK---STAEEQE---AFLKRLLEADANG 997
Query: 524 INNEESDDLRLSGLNSMV-----EKVI--AMRHEQVSGKA---GRKFEVNPVALLEESDL 573
+NEE+D L LN ++ EKV+ +M E+ S K R E + + + D+
Sbjct: 998 ADNEENDSLDDDELNEILARSEEEKVLFASMDEERKSEKVPYKSRLIEKDELPAVFTEDI 1057
Query: 574 LMH--ESFASATSYPDLDEASYRSWV--EKFKEASESSSNTIAESGRRR 618
H + + D Y + E++ +A + ++T+ E+ +R+
Sbjct: 1058 SHHFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDDNDTVEEAIKRK 1106
Score = 59 (25.8 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 469 TVEEVIMRRAERKLRLSHN-VVGDDVVDREVKERTAVETDD 508
TVEE I R+ ER + N + + +++ ++K+ E DD
Sbjct: 1098 TVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVGEEDD 1138
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 417 (151.9 bits), Expect = 2.9e-69, Sum P(2) = 2.9e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 353 LWALLNFLLPDVFNSADDFDSWF 375
Score = 360 (131.8 bits), Expect = 2.9e-69, Sum P(2) = 2.9e-69
Identities = 101/268 (37%), Positives = 145/268 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEER---FAAIRHFSVQSAIERLY 401
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER F I + AIE
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAF- 563
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+ F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 564 -NVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 622
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLF 519
L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F
Sbjct: 623 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGATHVF 680
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESF 579
K +E +D+ ++ L E+ A +E++ K G + + E L E
Sbjct: 681 ASK--ESELTDE-DITTLLERGERKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG- 734
Query: 580 ASATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 735 ---EDYREKQKLGMVEWIEPPKRERKAN 759
Score = 255 (94.8 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 283 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 341
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 394
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 395 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 441
Score = 38 (18.4 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHES--FASATSYPDLDEASYRSWVEKFKEASESS 607
E++ +A K ++ + ++++ L+ +S A + + + K E ++
Sbjct: 633 ERIVERAEIKLRLDSI-VIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDED 691
Query: 608 SNTIAESGRRRSPE 621
T+ E G R++ E
Sbjct: 692 ITTLLERGERKTAE 705
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 443 (161.0 bits), Expect = 3.0e-69, Sum P(2) = 3.0e-69
Identities = 106/296 (35%), Positives = 167/296 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q++GL W++ Y +N +L DEMGLGKT+Q IS ++YL + + GP+LV+ PLS
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLS 592
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W +E AK+ P + + Y G ++ RR + + Q+ + F+VL+TTY
Sbjct: 593 TLSNWQNEFAKWAPSVTTIIYKGTKDARRRV----------EGQIRKGA---FNVLMTTY 639
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+ V+ ++ L +I W Y IIDE RLKN + L +L F RLL+TGTP+QN L E
Sbjct: 640 EYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPE 699
Query: 217 LWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAFMLRR 272
LWAL++F +PS+F + F F +A +++ K +E+ L +L F+LRR
Sbjct: 700 LWALLNFLLPSIFSSCGTFEQWF-NAPFATTGEKVELNQEETMLIIRRLHKVLRPFLLRR 758
Query: 273 TKQKLVECGHLMLPPLTEITV-LQKKVYASILRKELPKLLALSSR-TANHQSLQNT 326
K++ VE LP TE + + ++ + + K L L ++ ++ +SL NT
Sbjct: 759 LKKE-VES---QLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSLMNT 810
Score = 332 (121.9 bits), Expect = 3.0e-69, Sum P(2) = 3.0e-69
Identities = 68/146 (46%), Positives = 93/146 (63%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHR+L+F QMT ++I +DFL R+Y+Y RLDGS + +ER + F+
Sbjct: 865 TGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFN----------- 913
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A +D F+FM+STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ V +
Sbjct: 914 APNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLR 973
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVV 489
L+T ++VEE I+ A KL + V+
Sbjct: 974 LITANSVEEKILAAARYKLNVDEKVI 999
Score = 40 (19.1 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETD 507
V + + V R+ +RK +++ DD +D V + +TD
Sbjct: 1137 VEDENNQAVAERKKQRKRKMAGLDENDDSMDDVVLQHKKKKTD 1179
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 424 (154.3 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 104/283 (36%), Positives = 156/283 (55%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL W++ + +N +L DEMGLGKT+Q IS L+YL + PGPFLV+
Sbjct: 777 VGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVI 836
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P ++ + Y G QR+ + +H + N F ++
Sbjct: 837 VPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK-----VMQH---DIRTGN-----FQLV 883
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTT++ V+ D+G L +I W + IIDE R+KN +S L L +++ RL++TGTP+QN
Sbjct: 884 LTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQN 943
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
NL ELWAL++F +P +F ++ F F ++ + ++ E+ T L +L
Sbjct: 944 NLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRP 1003
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILR 304
F+LRR K K VE LP E V LQ K+Y +LR
Sbjct: 1004 FLLRRLK-KDVEKD---LPNKVEKVVKCKSSALQSKLYQQMLR 1042
Score = 358 (131.1 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 83/201 (41%), Positives = 120/201 (59%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GH+VL+F QMTQ ++I++DFL R Y RLDG +A++R ++ F+
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFN----------- 1165
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A +D F F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1166 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1225
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDD-LRSIIFGLHLFDPK 522
L+TE++VEE+I+ RA +KL + V+ D + TA E + LR++I K
Sbjct: 1226 LITENSVEEMILERAHKKLEIDGKVIQAGKFDNK---STAEEQEAMLRALIEKEDERRQK 1282
Query: 523 AINNEESDDLRLSGLNSMVEK 543
+EE +DL LN ++ +
Sbjct: 1283 GGTDEEEEDLDDDELNQIIAR 1303
Score = 42 (19.8 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266
GTP+Q + + + P + T Q + + + +P+ +QF LK L
Sbjct: 175 GTPLQQQQQQPFPHGNNSNPMLNQTAQQPPQSQQRQQNQPPSPQSAFTNQQFQLLKSQLQ 234
Query: 267 AF 268
AF
Sbjct: 235 AF 236
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 424 (154.3 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 104/283 (36%), Positives = 156/283 (55%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL W++ + +N +L DEMGLGKT+Q IS L+YL + PGPFLV+
Sbjct: 777 VGGTLKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVI 836
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P ++ + Y G QR+ + +H + N F ++
Sbjct: 837 VPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRK-----VMQH---DIRTGN-----FQLV 883
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTT++ V+ D+G L +I W + IIDE R+KN +S L L +++ RL++TGTP+QN
Sbjct: 884 LTTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQN 943
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
NL ELWAL++F +P +F ++ F F ++ + ++ E+ T L +L
Sbjct: 944 NLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRP 1003
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILR 304
F+LRR K K VE LP E V LQ K+Y +LR
Sbjct: 1004 FLLRRLK-KDVEKD---LPNKVEKVVKCKSSALQSKLYQQMLR 1042
Score = 358 (131.1 bits), Expect = 3.1e-69, Sum P(2) = 3.1e-69
Identities = 83/201 (41%), Positives = 120/201 (59%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GH+VL+F QMTQ ++I++DFL R Y RLDG +A++R ++ F+
Sbjct: 1117 TGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFN----------- 1165
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A +D F F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1166 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1225
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDD-LRSIIFGLHLFDPK 522
L+TE++VEE+I+ RA +KL + V+ D + TA E + LR++I K
Sbjct: 1226 LITENSVEEMILERAHKKLEIDGKVIQAGKFDNK---STAEEQEAMLRALIEKEDERRQK 1282
Query: 523 AINNEESDDLRLSGLNSMVEK 543
+EE +DL LN ++ +
Sbjct: 1283 GGTDEEEEDLDDDELNQIIAR 1303
Score = 42 (19.8 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266
GTP+Q + + + P + T Q + + + +P+ +QF LK L
Sbjct: 175 GTPLQQQQQQPFPHGNNSNPMLNQTAQQPPQSQQRQQNQPPSPQSAFTNQQFQLLKSQLQ 234
Query: 267 AF 268
AF
Sbjct: 235 AF 236
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 445 (161.7 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 109/312 (34%), Positives = 179/312 (57%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+++ +Q+EGL WL ++ G+ +L DEMGLGKT+QAIS +++ K +S GPFL+ PL
Sbjct: 201 KMRKYQLEGLEWLKSLWMNGLCGILADEMGLGKTVQAISLIAFFKEHNVS-GPFLISAPL 259
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S WV E A++TP ++ + Y G R++R +R+ + ++++Q SP F V+ T+
Sbjct: 260 STVSNWVDEFARWTPGIKTVLYHGTRDERAQLRKK-FMNLRDQK-----SP-DFPVVCTS 312
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y++ + D+ FL+Q W Y I+DE RLKN + L L + RLL+TGTP+QNN++
Sbjct: 313 YEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLS-YNSANRLLITGTPLQNNIT 371
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSSAP----KRGKIKEQFTSLKGILSAFML 270
ELW+L+HF +P +F LN F + F +V ++ +R K + +++ IL F+L
Sbjct: 372 ELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRK-RTLVSTMHSILKPFLL 430
Query: 271 RRTKQKLVEC-----GHLMLPPLTEITVLQKKVYASILR---------KELPKLLALSSR 316
RR K + +++ PLT + QK +Y IL K +L+A +
Sbjct: 431 RRVKTDVESALPKKREYILYAPLT---LEQKDLYREILNGTGRQYLEEKATERLMAKNGM 487
Query: 317 TANHQSLQNTAS 328
+ +SL+ +AS
Sbjct: 488 ISRPRSLKRSAS 499
Score = 319 (117.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 90/246 (36%), Positives = 128/246 (52%)
Query: 326 TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFL-ELRKYSYERLDGSIRAEER 384
TASG N GH++L+F+Q LDILQD+ LR ++ R+DG+I +R
Sbjct: 623 TASGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADR 682
Query: 385 FAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 444
A I+ F+ D +F++STRAGG G+NLVAADTVI ++ DWNPQ D
Sbjct: 683 QAQIKAFNTDK------------DYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDL 730
Query: 445 QALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAV 504
QA RAHRIGQ V+ L T+ TVE+ ++ +A+ K RL V+ + E T
Sbjct: 731 QAQDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSLLSESTMS 790
Query: 505 --ETDDLRSIIFGLHLF-------DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGK 555
+ D+L+ + G F DP +I ++E DLR+ S +A + V GK
Sbjct: 791 RDDVDELKRAL-GEDEFERFEASADPASILSDE--DLRVLTDRSEEAYALAEKGLDVDGK 847
Query: 556 AGRKFE 561
A + E
Sbjct: 848 AFKAVE 853
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 417 (151.9 bits), Expect = 3.6e-69, Sum P(2) = 3.6e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 353 LWALLNFLLPDVFNSADDFDSWF 375
Score = 359 (131.4 bits), Expect = 3.6e-69, Sum P(2) = 3.6e-69
Identities = 100/265 (37%), Positives = 145/265 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER AI F+V ++
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNS-------- 556
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 557 ---SRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 613
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F K
Sbjct: 614 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGATHVFASK 671
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASA 582
+E +D+ ++ L E+ A +E++ K G + + E L E
Sbjct: 672 --ESELTDE-DITTLLERGERKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG---- 722
Query: 583 TSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 723 EDYREKQKLGMVEWIEPPKRERKAN 747
Score = 255 (94.8 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 283 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 341
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 342 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 394
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 395 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 441
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHES--FASATSYPDLDEASYRSWVEKFKEASESS 607
E++ +A K ++ + ++++ L+ +S A + + + K E ++
Sbjct: 621 ERIVERAEIKLRLDSI-VIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDED 679
Query: 608 SNTIAESGRRRSPE 621
T+ E G R++ E
Sbjct: 680 ITTLLERGERKTAE 693
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 413 (150.4 bits), Expect = 3.6e-69, Sum P(2) = 3.6e-69
Identities = 85/203 (41%), Positives = 123/203 (60%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 246 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 293
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++R+ F RLL+TGTP+QNNL E
Sbjct: 294 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRD-FKSTNRLLLTGTPLQNNLHE 352
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + F S F
Sbjct: 353 LWALLNFLLPDVFNSAEDFDSWF 375
Score = 364 (133.2 bits), Expect = 3.6e-69, Sum P(2) = 3.6e-69
Identities = 102/271 (37%), Positives = 150/271 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSV-----QSAIER 399
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER ++ F + Q + E
Sbjct: 505 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDFKIIFHEYQGSNEA 564
Query: 400 LYS-EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458
+ + + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ
Sbjct: 565 IEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKP 624
Query: 459 VLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL- 516
V L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G
Sbjct: 625 VRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKMAKE-EMLQMIRHGAT 682
Query: 517 HLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMH 576
H+F K +E +D+ ++ L EK A +E++ K G N +E+S L
Sbjct: 683 HVFASK--ESELTDE-DITTLLERGEKKTAEMNERLQ-KMGESSLRNFRMDIEQS-LYKF 737
Query: 577 ESFASATSYPDLDEASYRSWVEKFKEASESS 607
E Y + + W+E K +++
Sbjct: 738 EG----EDYREKQKLGMVEWIEPPKRERKAN 764
Score = 40 (19.1 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 229 FGTLNQFLST---FKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT--KQKLVECGHL 283
F + N+ L T ++ +H A + + F S + S F + QKLVE H
Sbjct: 333 FKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTKNCLGDQKLVERLHT 392
Query: 284 MLPPLTEITVLQKKVYASIL-RKELPKLLALS 314
+L P + ++ V S+ +KE+ L LS
Sbjct: 393 VLKPFL-LRRIKTDVEKSLPPKKEIKIYLGLS 423
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 424 (154.3 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 91/234 (38%), Positives = 140/234 (59%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V +L+P+Q++G++WL+ + + +L DEMGLGKTLQ ISFL YL++ + PGPFLV+
Sbjct: 192 VNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVI 251
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P S + W+ E+ ++TP + G++E+R + Q ++ FDV+
Sbjct: 252 APKSTLNNWLREINRWTPDVNAFILQGDKEERAELI---------QKKLLGCD---FDVV 299
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+ +Y++++ ++ L +I W Y IIDEA R+KN S+L VLRE F RLL+TGTP+QN
Sbjct: 300 IASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLRE-FTSRNRLLITGTPLQN 358
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQF-TSLKGIL 265
NL ELWAL++F +P +F F F S+ + KI +Q T L+ L
Sbjct: 359 NLHELWALLNFLLPDIFSDAQDFDDWFSS---ESTEEDQDKIVKQLHTVLQPFL 409
Score = 351 (128.6 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 76/169 (44%), Positives = 105/169 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D+ R Y Y R+DGS E+R AI ++ A
Sbjct: 518 GSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYN-----------A 566
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ FVF+++TRAGG+G+NL +AD V+ Y+ DWNPQ D QA+ RAHRIGQ V L
Sbjct: 567 PDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRL 626
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII 513
VT+++VEE I+ RA +KLRL V+ + + KE A D L S+I
Sbjct: 627 VTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKDALLSMI 675
Score = 273 (101.2 bits), Expect = 3.5e-52, Sum P(2) = 3.5e-52
Identities = 67/162 (41%), Positives = 94/162 (58%)
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
FDV++ +Y++++ ++ L +I W Y IIDEA R+KN S+L VLRE F RLL+TGT
Sbjct: 296 FDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLRE-FTSRNRLLITGT 354
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL ELWAL++F +P +F F F S+ + KI +Q L +L F
Sbjct: 355 PLQNNLHELWALLNFLLPDIFSDAQDFDDWFSS---ESTEEDQDKIVKQ---LHTVLQPF 408
Query: 269 MLRRTKQKLVECGHLMLPPLT---EITVLQKKVYASILRKEL 307
+LRR K VE L L ++ +QKK Y IL K+L
Sbjct: 409 LLRRIKSD-VETSLLPKKELNLYVGMSSMQKKWYKKILEKDL 449
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 416 (151.5 bits), Expect = 4.6e-69, Sum P(2) = 4.6e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 246
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 247 TLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIR------------DEMMPGEWDVCVTSY 294
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 295 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 353
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 354 LWALLNFLLPDVFNSADDFDSWF 376
Score = 359 (131.4 bits), Expect = 4.6e-69, Sum P(2) = 4.6e-69
Identities = 103/267 (38%), Positives = 147/267 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER AI F+ A
Sbjct: 506 GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFN-----------A 554
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 555 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 614
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F K
Sbjct: 615 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMIRHGATHVFACK 672
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHE-QVSGKAG-RKFEVNPVALLEESDLLMHESFA 580
+E +D+ ++ L +K M Q G++ R F ++ LE+S L E
Sbjct: 673 --ESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMD----LEQS-LYKFEG-- 723
Query: 581 SATSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 724 --EDYREKQKLGTVEWIEPPKRERKAN 748
Score = 255 (94.8 bits), Expect = 2.5e-51, Sum P(2) = 2.5e-51
Identities = 63/171 (36%), Positives = 97/171 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 284 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 342
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 343 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 395
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKL 310
F+LRR K + + LPP EI + +Q++ Y IL K++ L
Sbjct: 396 KPFLLRRIKTDVEKS----LPPKKEIKIYLGLSKMQREWYTKILMKDIDVL 442
Score = 39 (18.8 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 237 STFKD------AVHSSSAPKRGKIKEQFTS 260
STFK+ A ++A ++G+ KE+ TS
Sbjct: 32 STFKEEGAAAAATEGTTATEKGEKKEKITS 61
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 413 (150.4 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 86/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 169 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 228
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE ++ P L + +G++EQR R + + P
Sbjct: 229 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 276
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 277 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 335
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 336 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 368
Score = 362 (132.5 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 498 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QDSINA-YNEP 547
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 548 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 606
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 607 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 663
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 664 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 715
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 716 -EDYREKQKIAFTEWIEPPKRERKAN 740
Score = 40 (19.1 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 377 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 404
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 413 (150.4 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 86/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE ++ P L + +G++EQR R + + P
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 277
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 336
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 337 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 369
Score = 362 (132.5 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QESINA-YNEP 548
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 549 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 607
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 608 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 664
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 665 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 716
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 717 -EDYREKQKIAFTEWIEPPKRERKAN 741
Score = 40 (19.1 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 378 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 405
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 413 (150.4 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 86/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE ++ P L + +G++EQR R + + P
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 277
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 336
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 337 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 369
Score = 362 (132.5 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QESINA-YNEP 548
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 549 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 607
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 608 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 664
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 665 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 716
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 717 -EDYREKQKIAFTEWIEPPKRERKAN 741
Score = 40 (19.1 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 378 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 405
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 413 (150.4 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 86/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE ++ P L + +G++EQR R + + P
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 277
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 336
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 337 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 369
Score = 362 (132.5 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QDSINA-YNEP 548
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 549 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 607
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 608 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 664
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 665 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 716
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 717 -EDYREKQKIAFTEWIEPPKRERKAN 741
Score = 40 (19.1 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 378 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 405
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 413 (150.4 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 86/213 (40%), Positives = 128/213 (60%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
D+ + +L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + P
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIP 229
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GP +VL P S W+SE ++ P L + +G++EQR R + + P
Sbjct: 230 GPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDV------------LLP 277
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+T
Sbjct: 278 GEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLT 336
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
GTP+QNNL ELW+L++F +P VF + + F S F
Sbjct: 337 GTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF 369
Score = 362 (132.5 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 99/266 (37%), Positives = 145/266 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QESINA-YNEP 548
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 549 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 607
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 608 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 664
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 665 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 716
Query: 582 ATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 717 -EDYREKQKIAFTEWIEPPKRERKAN 741
Score = 40 (19.1 bits), Expect = 6.6e-69, Sum P(3) = 6.6e-69
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 275 QKLVECGHLMLPPLTEITVLQKKVYASILRKELP 308
QKLVE H++L P L +++ A + K LP
Sbjct: 378 QKLVERLHMVLRPF-----LLRRIKADV-EKSLP 405
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 415 (151.1 bits), Expect = 6.7e-69, Sum P(2) = 6.7e-69
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 195 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 254
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 255 TLYNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 302
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 303 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 361
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 362 LWALLNFLLPDVFNSADDFDSWF 384
Score = 359 (131.4 bits), Expect = 6.7e-69, Sum P(2) = 6.7e-69
Identities = 101/265 (38%), Positives = 144/265 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG EER + AIE A
Sbjct: 515 GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER-------EKKEAIEAF--NA 565
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 566 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 625
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I G H+F K
Sbjct: 626 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMIRHGATHVFASK 683
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASA 582
+E +D+ ++ L EK A +E++ K G + + E L E
Sbjct: 684 --ESELTDE-DITTLLERGEKKTAEMNERLQ-KMGES-SLRNFRMDTEQSLYKFEG---- 734
Query: 583 TSYPDLDEASYRSWVEKFKEASESS 607
Y + + W+E K +++
Sbjct: 735 EDYREKQKLGMVEWIEPPKRERKAN 759
Score = 247 (92.0 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 64/172 (37%), Positives = 97/172 (56%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 292 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 350
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 351 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 403
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKV-YASILRKELPKL 310
F+LRR K + + LPP EI V +Q++ Y IL K++ L
Sbjct: 404 KPFLLRRIKTDVEKS----LPPKKEIKVYLGLSKMQREWWYTKILMKDIDVL 451
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 408 (148.7 bits), Expect = 7.7e-69, Sum P(2) = 7.7e-69
Identities = 84/204 (41%), Positives = 124/204 (60%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +QV GL+WLI Y G+N +L DEMGLGKTLQ IS L Y+K + PGP +VL P
Sbjct: 164 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPK 223
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W++E ++ P L + +G+++QR R + + P +DV +T+
Sbjct: 224 STLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDV------------LLPGEWDVCVTS 271
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL
Sbjct: 272 YEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLTGTPLQNNLH 330
Query: 216 ELWALMHFCMPSVFGTLNQFLSTF 239
ELWAL++F +P VF + F S F
Sbjct: 331 ELWALLNFLLPDVFNSSEDFDSWF 354
Score = 366 (133.9 bits), Expect = 7.7e-69, Sum P(2) = 7.7e-69
Identities = 101/267 (37%), Positives = 143/267 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER A+I Y+E
Sbjct: 484 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASIN----------AYNEP 533
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G + FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 534 GSSK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 592
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ +VD+ + + E L+ I G H+F K
Sbjct: 593 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEM--LQMIRHGATHVFASK 650
Query: 523 A--INNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFA 580
I +E+ D + G E +E++S K G + + ES + E
Sbjct: 651 ESEITDEDIDHILERGAKKTAEM-----NEKLS-KMGES-SLRNFTMDTESSVYNFEG-- 701
Query: 581 SATSYPDLDEASYRSWVEKFKEASESS 607
Y + + ++ W+E K +++
Sbjct: 702 --EDYREKQKMAFTEWIEPPKRERKAN 726
Score = 42 (19.8 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 229 FGTLNQFLST---FKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT--KQKLVECGHL 283
F T N+ L T ++ +H A + + F S + S F QKLVE H+
Sbjct: 312 FKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVERLHM 371
Query: 284 MLPPLTEITVLQKKVYASILRKELP 308
+L P L +++ A + K LP
Sbjct: 372 VLRPF-----LLRRIKADV-EKSLP 390
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 398 (145.2 bits), Expect = 2.4e-68, Sum P(2) = 2.4e-68
Identities = 100/292 (34%), Positives = 155/292 (53%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ Q+ G++W+ + G N +L DEMGLGKT+Q ++F+S+L F++ GP +++ PL
Sbjct: 375 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL 434
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W+ K+ P L + Y+G ++ R IR YE + + F+VLLTT
Sbjct: 435 STMPAWLDTFEKWAPDLNCICYMGNQKSRDTIRE--YEFYTNP-RAKGKKTMKFNVLLTT 491
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+ +L D+ L I W + +DEA RLKN S LY L F + R+L+TGTP+QNN+
Sbjct: 492 YEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNS-FKVANRMLITGTPLQNNIK 550
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
EL AL++F MP F T++Q + F++ +E L + F+LRR K+
Sbjct: 551 ELAALVNFLMPGRF-TIDQEID-FENQDEEQ--------EEYIHDLHRRIQPFILRRLKK 600
Query: 276 KLVECGHLMLPPL--TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325
+ + + E++ +Q + Y +IL K L A H SL N
Sbjct: 601 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA--GAKGGHFSLLN 650
Score = 378 (138.1 bits), Expect = 2.4e-68, Sum P(2) = 2.4e-68
Identities = 96/268 (35%), Positives = 148/268 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QM + LDIL D+L ++ +++RLDG++ + +R +I HF+ +
Sbjct: 711 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS-------- 762
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
ND FVF++STRAGG+G+NL+ ADTV+ ++ DWNPQ D QA+ RAHRIGQ NHV+ L
Sbjct: 763 --ND-FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRL 819
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD-REVKERTAVETDDLRSII-FGLHLFDPK 522
V++ TVEE ++ RA +K+ L + ++ V D + ++ +L +I+ FG
Sbjct: 820 VSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTA 879
Query: 523 AINNEESDDLRLSG-LNSMVEKVIA--MRHEQVSGKAGRK-FEVNPV-ALLEESDLLMHE 577
N ++ +DL L LN + V + + G+ K FEV A ++ D++ E
Sbjct: 880 TDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEE 939
Query: 578 SFASATSYPDLDEASYRSWVEKFKEASE 605
DE R E KE E
Sbjct: 940 ELKKLQ-----DEEQKRKDEEYVKEQLE 962
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 392 (143.0 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 97/276 (35%), Positives = 157/276 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QM + LDIL D+L LR Y ++RLDG++ A R +I HF+ ++ +
Sbjct: 706 GHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPD------ 759
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVF++STRAGG+G+NL+ ADTVI ++ DWNPQ D QA+ RAHRIGQ NHV+ L
Sbjct: 760 -----FVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRL 814
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERT-AVETDDLRSII-FGL-HLFDP 521
+++ T+EE ++ RA RK+ L + ++ V D++ + ++L +I+ FG ++F
Sbjct: 815 LSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMF-- 872
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
KA NN++ L L+ ++E A H+ + G + L++ ++ +++ S
Sbjct: 873 KAENNQKK--LEDMNLDEILEH--AEDHDTSNDVGGAS--MGGEEFLKQFEVTDYKADVS 926
Query: 582 ATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRR 617
L E ++ +E E+ I S RR
Sbjct: 927 WDDIIPLTEREKFEEEDRLREEEEALKQEIELSSRR 962
Score = 381 (139.2 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 85/194 (43%), Positives = 114/194 (58%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ Q+ G++W+ + N +L DEMGLGKT+Q ++FLSYL S GPFLV+ PL
Sbjct: 374 ELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPL 433
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +A + + + Y+G R+ IR YE + +Q + F++LLTT
Sbjct: 434 STVPAWQETLALWASDMNCISYLGNTTSRQVIRD--YEFYVDGTQK-----IKFNLLLTT 486
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+ VL D+ LS I W Y IDEA RLKN S LY L + F RLL+TGTP+QNN+
Sbjct: 487 YEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQ-FKNSNRLLITGTPLQNNIR 545
Query: 216 ELWALMHFCMPSVF 229
EL AL+ F MP F
Sbjct: 546 ELAALVDFLMPGKF 559
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 434 (157.8 bits), Expect = 5.5e-68, Sum P(2) = 5.5e-68
Identities = 112/323 (34%), Positives = 181/323 (56%)
Query: 2 KYKERLQVAAKIIHDNDER-DGQ-TPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVL 59
+ E L+ +K + D + +GQ P + ++ +QVEG+ WL + G+N +
Sbjct: 196 RLSETLRENSKQMLDPERTVNGQPVPAQQPQLFTGGVMRWYQVEGIEWLRMLWENGINGI 255
Query: 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVG 119
L DEMGLGKT+Q I+ ++ + ++ GPFLV+ PLS W+SE +FTP++ VL Y G
Sbjct: 256 LADEMGLGKTIQCIAHIAMMVEKKVL-GPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHG 314
Query: 120 EREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEA 179
+++R ++ + + +H Q + + P V++T++++ + D+ FL + W Y I+DE
Sbjct: 315 PQKERLDLVKKIRQH---QGSL-RMCP----VVVTSFEIAMRDRKFLQRFHWNYLIVDEG 366
Query: 180 QRLKNPSSVLYNVLREHFLMP--RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLS 237
R+KN + L L+ ++P +LL+TGTP+QNNLSELW+L++F +P VF L F S
Sbjct: 367 HRIKNLNCRLVQELK---MLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFES 423
Query: 238 TFKDAVHSSSAPKR-GKIKEQ--FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVL 294
F + +S A +EQ L IL+ F+LRR K + L +PP EI V
Sbjct: 424 WFDISTITSDAENIVANEREQNILHMLHLILTPFLLRRLKSDVT----LEVPPKKEIVVY 479
Query: 295 ------QKKVYASILRKELPKLL 311
Q+ Y +I+ K + KLL
Sbjct: 480 APLTNKQEAFYMAIVNKTIAKLL 502
Score = 322 (118.4 bits), Expect = 5.5e-68, Sum P(2) = 5.5e-68
Identities = 71/173 (41%), Positives = 107/173 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QMT LDIL D+ LR Y Y RLDGS+ +R ++ FS S+
Sbjct: 631 GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFS---------SDP 681
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+F++STRAGG+G+NL +ADTVI ++ DWNPQ D QA R HRIGQ V+ L
Sbjct: 682 ---EVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRL 738
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD---REVKE-RTAVETDDLRSII 513
+T +T++E I+ RA K +L V+ + E+K+ ++ ++ D+L ++
Sbjct: 739 ITANTIDEKILERASAKRKLEKMVIHKNKFKGSKAELKQSKSCLDVDELVELL 791
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 406 (148.0 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 84/203 (41%), Positives = 123/203 (60%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +QV GL+W+I Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 107 LRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 166
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L + +G+++ R R + + P +DV +T+Y
Sbjct: 167 TLHNWMNEFKRWVPSLRAVCLIGDKDARAAFIRDV------------MMPGEWDVCVTSY 214
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 215 EMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLTGTPLQNNLHE 273
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 274 LWALLNFLLPDVFNSADDFDSWF 296
Score = 359 (131.4 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 100/265 (37%), Positives = 143/265 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVLLF+QMT+ LDIL+D+ R Y Y RLDG EER AI F+ A
Sbjct: 426 GSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFN-----------A 474
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+FM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 475 PNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 534
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSIIFGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ ++D++ + E L+ I G H+F K
Sbjct: 535 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKDEM--LQMIRHGATHVFASK 592
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASA 582
E D ++ + EK A +E++ K G N ++++ ++ +F
Sbjct: 593 DSELTEED---ITTILERGEKKTAEMNERLQ-KMGESSLRN---FTMDTEMSLY-NF-EG 643
Query: 583 TSYPDLDEASYRSWVEKFKEASESS 607
Y + + S W+E K +++
Sbjct: 644 EDYREKQKLSMMEWIEPPKRERKAN 668
Score = 254 (94.5 bits), Expect = 2.5e-51, Sum P(2) = 2.5e-51
Identities = 61/168 (36%), Positives = 97/168 (57%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 204 PGEWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLL 262
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 263 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 315
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKEL 307
F+LRR K ++ + LPP E+ + +Q++ Y IL K++
Sbjct: 316 KPFLLRRIKAEVEKS----LPPKKEVKIYLGLSKMQREWYTRILMKDI 359
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 423 (154.0 bits), Expect = 6.1e-68, Sum P(2) = 6.1e-68
Identities = 87/214 (40%), Positives = 132/214 (61%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
++ F + +L+ +QV+GL+WLI + ++ +L DEMGLGKTLQ ISFL YL++ +
Sbjct: 174 ESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIE 233
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
GPFL++ P S D W E K+TP + VL G+++ R +I R + +
Sbjct: 234 GPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEAR---------- 283
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
FDVL+T+Y++V+ ++ L ++ W Y +IDEA R+KN S L ++R F RLL+T
Sbjct: 284 --FDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRL-FYSKNRLLIT 340
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFK 240
GTP+QNNL ELWAL++F +P +FG F F+
Sbjct: 341 GTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE 374
Score = 341 (125.1 bits), Expect = 6.1e-68, Sum P(2) = 6.1e-68
Identities = 80/197 (40%), Positives = 116/197 (58%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D+ R + Y R+DGS EER AI ++ ++
Sbjct: 506 GSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNS-------- 557
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ FVF+++TRAGG+G+NLV ADTVI ++ DWNPQ D QA+ RAHRIGQ V
Sbjct: 558 ---EKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRF 614
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGL-HLFDPK 522
VTE+ +EE ++ RA +KLRL V+ + + DDL +I FG ++F+ K
Sbjct: 615 VTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNS--KDDLLDMIQFGAKNMFEKK 672
Query: 523 AIN---NEESDDLRLSG 536
A + + DD+ G
Sbjct: 673 ASKVTVDADIDDILKKG 689
Score = 259 (96.2 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 61/164 (37%), Positives = 99/164 (60%)
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
FDVL+T+Y++V+ ++ L ++ W Y +IDEA R+KN S L ++R F RLL+TGT
Sbjct: 284 FDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRL-FYSKNRLLITGT 342
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL ELWAL++F +P +FG F F+ ++S + + +Q L +L+ F
Sbjct: 343 PLQNNLHELWALLNFLLPDIFGDSELFDEWFEQ---NNSEQDQEIVIQQ---LHSVLNPF 396
Query: 269 MLRRTKQKLVECGHLMLPPL-TEITV----LQKKVYASILRKEL 307
+LRR K + + +LP + T + V +Q + Y S+L K++
Sbjct: 397 LLRRVKADVEKS---LLPKIETNVYVGMTDMQIQWYKSLLEKDI 437
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 424 (154.3 bits), Expect = 6.6e-68, Sum P(2) = 6.6e-68
Identities = 113/303 (37%), Positives = 159/303 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 710 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 769
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 770 TIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEASVKF 829
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W ++DEA RLKN S + +L + L +LL+TGTP
Sbjct: 830 HVLLTSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQ-HKLLLTGTP 888
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 889 LQNNLEELFHLLNFLTPERFSNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 938
Query: 270 LRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKLLALSSRTANHQ-S 322
LRR K + + H+ P TE+ V +QKK Y IL + AL++R +Q S
Sbjct: 939 LRRLKADVFK--HM--PSKTELIVRVELSPMQKKYYKFILTRNFE---ALNTRGGGNQVS 991
Query: 323 LQN 325
L N
Sbjct: 992 LLN 994
Score = 347 (127.2 bits), Expect = 6.6e-68, Sum P(2) = 6.6e-68
Identities = 84/190 (44%), Positives = 113/190 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1050 GHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMR---------QEAIDRF--NA 1098
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G FVF++STRAGG+G+NL ADTV+ Y+ DWNP D QA RAHRIGQ V+
Sbjct: 1099 PGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1158
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF--DP 521
VT+ +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +
Sbjct: 1159 VTKASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEG 1215
Query: 522 KAINNEESDD 531
+ N E +D
Sbjct: 1216 EGENKEGQED 1225
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 402 (146.6 bits), Expect = 9.4e-68, Sum P(2) = 9.4e-68
Identities = 87/194 (44%), Positives = 115/194 (59%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
E++ Q+ G++W+ + N +L DEMGLGKT+Q + FLSYL S GPFL++ PL
Sbjct: 389 EIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPL 448
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +A +TP L + Y G E R NIR YE +N L F++LLTT
Sbjct: 449 STVPAWQETLANWTPDLNSICYTGNTESRANIRE--YEFYLS----TNSRKLKFNILLTT 502
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+ +L D+ L+ I W Y IDEA RLKN S LY L + F RLL+TGTP+QNNL
Sbjct: 503 YEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQ-FRTANRLLITGTPLQNNLK 561
Query: 216 ELWALMHFCMPSVF 229
EL +L++F MP F
Sbjct: 562 ELASLVNFLMPGKF 575
Score = 367 (134.2 bits), Expect = 9.4e-68, Sum P(2) = 9.4e-68
Identities = 82/204 (40%), Positives = 127/204 (62%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GHRVL+F+QM + L+IL +++ LR Y+Y+RLDG+I A R +I HF+ + +
Sbjct: 718 HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPD---- 773
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
FVF++STRAGG+G+NL ADTVI ++ DWNPQ D QA+ RAHRIGQ NHV
Sbjct: 774 -------FVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVY 826
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERT-AVETDDLRSII-FGL-HLF 519
+++ TVEE I+ RA RK+ L + ++ V ++ + + +L +I+ FG ++F
Sbjct: 827 RFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMF 886
Query: 520 DPKAINNEES-DDLRLSGLNSMVE 542
KA N++ +++ L + S E
Sbjct: 887 --KATENQKKLENMNLDDILSHAE 908
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 419 (152.6 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 86/200 (43%), Positives = 126/200 (63%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 476 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 535
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + P++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 536 STLTSWQREIQTWAPQMNAVVYLGDITSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 588
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 589 YEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 647
Query: 216 ELWALMHFCMPSVFGTLNQF 235
ELW+L+HF MP F + F
Sbjct: 648 ELWSLLHFIMPEKFSSWEDF 667
Score = 348 (127.6 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 92/275 (33%), Positives = 155/275 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L+ R++ ++RLDGSI+ E R A+ HF+ +
Sbjct: 800 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE---------- 849
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 850 -GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 908
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREV-------KERTAVETDDLRSII-FG 515
VT+ +VEE I+ RA++K+ L H V+ D + V T ++L +I+ FG
Sbjct: 909 VTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFG 968
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQ----VSGKAGRKFEVNPVALLEE 570
LF K EE + + ++ ++++ +E V + +F+V + ++E
Sbjct: 969 AEELF--KEPEGEEQEPQEMD-IDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1025
Query: 571 SDLLMHESFASATSYPDLDEASYRSWVEKFKEASE 605
D+ + E ++ ++ ++ S R +E+ + E
Sbjct: 1026 DDIEL-EPERNSRNWEEIIPESQRRRIEEEERQKE 1059
Score = 259 (96.2 bits), Expect = 8.2e-50, Sum P(2) = 8.2e-50
Identities = 66/173 (38%), Positives = 98/173 (56%)
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
L F++LLTTY+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+T
Sbjct: 580 LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLIT 638
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-FTSLKGIL 265
GTP+QN+L ELW+L+HF MP F + F + H GK +E + SL L
Sbjct: 639 GTPLQNSLKELWSLLHFIMPEKFSSWEDF-----EEEH-------GKGREYGYASLHKEL 686
Query: 266 SAFMLRRTKQKLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K+ + + + + E++ LQK+ Y IL + K L+ S+
Sbjct: 687 EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNY-KALSKGSK 738
Score = 42 (19.8 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 249 PKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEIT 292
P + +K+ KG+ L T+Q L++ G + L E T
Sbjct: 1424 PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT 1467
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 447 (162.4 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 107/297 (36%), Positives = 167/297 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LKP+Q++GL W++ + +N +L DEMGLGKT+Q I+F++YL + + GPFLV+ PL
Sbjct: 365 KLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPL 424
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +E K+ + ++ Y G +E R+ ++E + + + F+VLLTT
Sbjct: 425 STVPNWQNEFDKWAANVHLIAYKGPKETRK-----VFEPIIKSGK--------FNVLLTT 471
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
++ V+ ++ L ++ W Y IIDE RLKN L +L F RRLL+TGTP+QN L
Sbjct: 472 FEYVIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLP 531
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAFMLR 271
ELWAL++F +PS+F + + F F +A +++ K +E+ L +L F+LR
Sbjct: 532 ELWALLNFLLPSIFSSCSTFEQWF-NAPFATTGEKVELTQEETMLIIRRLHKVLRPFLLR 590
Query: 272 RTKQKLVECGHLMLPPLTEITV-LQKKVYASILRKELPKLLALSSRT-ANHQSLQNT 326
R K++ VE LP E V +L K + K L L +T +SL+NT
Sbjct: 591 RLKKE-VESE---LPDKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTGSKSLRNT 643
Score = 308 (113.5 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 97/280 (34%), Positives = 137/280 (48%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F QMT + I++DFL Y RLDGS + +ER A + F+
Sbjct: 698 TGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFN----------- 746
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A ++ F+FM+STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ V
Sbjct: 747 APNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFR 806
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLF--DP 521
L+T ++VEE I+ A KL + V+ D + A + L +II + D
Sbjct: 807 LITANSVEEKILAAARYKLNVDEKVIQAGKFDN--RSTGAERREILENIIKTENESEEDE 864
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
+ N+E+ +D+ LS E M E+ + +K P L+ E D + + +
Sbjct: 865 EVPNDEDINDI-LSRSEEEFELFQKMDQERFENEQAQK--AKP-RLVGE-DEIPRDILRA 919
Query: 582 ATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPE 621
A DE Y +EK KE + RR E
Sbjct: 920 A------DETDY---IEKAKEEGRVPYLEVMPGSRRTRRE 950
Score = 40 (19.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 126 NIRRTMYEHVKE 137
+IRRT YE+++E
Sbjct: 159 SIRRTKYEYLQE 170
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 424 (154.3 bits), Expect = 3.5e-67, Sum P(2) = 3.5e-67
Identities = 112/330 (33%), Positives = 173/330 (52%)
Query: 2 KYKERLQVAA----KIIHDNDER-DGQ-TPVDAAEFGVTAELKPHQVEGLSWLIRRYLLG 55
K K+RL K D + +GQ P + ++ +QVEG+ WL + G
Sbjct: 160 KIKDRLSQTVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENG 219
Query: 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVL 115
+N +L DEMGLGKT+Q I+ ++ L + PGPFLV PLS W++E +FTP++ +
Sbjct: 220 INGILADEMGLGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIPTM 278
Query: 116 RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTI 175
Y G +++RR + +H+ E+ + P V++T++++ + D+ L W Y I
Sbjct: 279 LYHGTQQERR----ILVKHIHERKGTLQIHP----VVITSFEIAMRDRTTLQNCYWKYLI 330
Query: 176 IDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQF 235
+DE R+KN L L+ F +LL+TGTP+QNNLSELW+L++F +P VF L F
Sbjct: 331 VDEGHRIKNMKCRLIRELKR-FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF 389
Query: 236 LSTFKDAVHSSSAPKR-GKIKEQ--FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEIT 292
S F S +A K +EQ L IL+ F+LRR K + L +PP E+
Sbjct: 390 ESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA----LEVPPKREVV 445
Query: 293 V---LQKK---VYASILRKELPKLLALSSR 316
V L KK Y +I+ + + + S +
Sbjct: 446 VYAPLSKKQEIFYTAIVNRTIANMFGSSEK 475
Score = 326 (119.8 bits), Expect = 3.5e-67, Sum P(2) = 3.5e-67
Identities = 67/145 (46%), Positives = 91/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VLLF+QMT+ LDIL D+ R +++ RLDGS+ ER I F+
Sbjct: 593 GHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDP--------- 643
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D F+F++STRAGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V+ L
Sbjct: 644 ---DVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRL 700
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT +T+++ I+ RA K +L ++
Sbjct: 701 VTANTIDQKIVERAAAKRKLEKLII 725
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 694 (249.4 bits), Expect = 3.7e-67, P = 3.7e-67
Identities = 186/492 (37%), Positives = 262/492 (53%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK QV+G++++ ++ NV+L DEMGLGKT+Q ++F+S+L+ + GPF+V+ PL
Sbjct: 445 QLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAFISWLRHVRRQQGPFVVVVPL 504
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPL-P-FDVLL 153
S W ++P L + Y G E RN+ +KE M + +P P F+VLL
Sbjct: 505 STMPSWAETFDNWSPDLNYVVYNGN-EASRNV-------LKEYELMVDGNPRRPKFNVLL 556
Query: 154 TTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
TTY+ VL+D FLSQ W + +DEA RLKN S LY L+E F P RLL+TGTPIQNN
Sbjct: 557 TTYEYVLVDSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQE-FNSPARLLITGTPIQNN 615
Query: 214 LSELWALMHFCMPSVFGT-----------------LNQFLSTF-----KDAVHSSSAPKR 251
L+EL AL+ F P + L + +S F K V S PK
Sbjct: 616 LAELSALLDFLNPGLVNVDADMDLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKT 675
Query: 252 GKI-KEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKV--YASILRKELP 308
KI + + + ++ +L + L E L I + KK + +
Sbjct: 676 EKIIRVELSDVQLEYYKNILTKNYAALNEGTKGQKQSLLNIMMELKKASNHPFMFPSAET 735
Query: 309 KLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELR 368
K+L S+R + T+SG GHRVL+F+QM + LDIL D++E R
Sbjct: 736 KILEGSTRREDVLRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYR 795
Query: 369 KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA 428
Y+Y+RLDG+I + R AI H Y+ +D F F++STRAGG+G+NL+ A
Sbjct: 796 GYTYQRLDGTIPSASRRLAIEH----------YNAPDSSD-FAFILSTRAGGLGINLMTA 844
Query: 429 DTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNV 488
DTVI ++ DWNPQ D QA+ RAHRIGQ V LV++ TVEE ++ RA KL L
Sbjct: 845 DTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLLEFIT 904
Query: 489 VGDDVVDREVKE 500
+ V D+E E
Sbjct: 905 IQRGVTDKEASE 916
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 416 (151.5 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 88/248 (35%), Positives = 140/248 (56%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL W++ + +N +L DEMGLGKT+Q IS L+YL + GP+LV+
Sbjct: 763 VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W SE AK+ P L + + G +R+ ++ + + FDV+
Sbjct: 823 VPLSTLSNWSSEFAKWAPTLRTISFKGSPNERK-------------AKQAKIRAGEFDVV 869
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTT++ ++ ++ LS++ W + IIDE R+KN S L L H+ RL++TGTP+QN
Sbjct: 870 LTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQN 929
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
NL ELWAL++F +P +F ++ F F ++ + ++ E+ T L +L
Sbjct: 930 NLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRP 989
Query: 268 FMLRRTKQ 275
F+LRR K+
Sbjct: 990 FLLRRLKK 997
Score = 342 (125.4 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 91/237 (38%), Positives = 135/237 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F QMTQ +DI++DFL Y RLDG +++ER S + RL++
Sbjct: 1102 TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDER----------SELLRLFN- 1150
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A ++ F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1151 APDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 1210
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL-RSIIFGLHLFDPK 522
L+T ++VEEVI+ RA +KL + V+ D + T+ E + L RS++ K
Sbjct: 1211 LITTNSVEEVILERAYKKLDIDGKVIQAGKFDNK---STSEEQEALLRSLLDAEEERRKK 1267
Query: 523 AINN-EESDDLRLSGLNSMV-----EKVIAMRHEQVSGKAGRKFEVNPVALLEESDL 573
+ EE ++L+ S +N ++ E + R ++ K + V LLE+S+L
Sbjct: 1268 RESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELGVKS-RLLEKSEL 1323
Score = 45 (20.9 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 589 DEASYRSWVEKFKEASESSSNTIAESGRRRSPEDK 623
D S W+ +F E S+ N +R EDK
Sbjct: 1361 DNMSEEQWLRQF-EVSDDEKNDKQARKQRTKKEDK 1394
Score = 38 (18.4 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 121 REQRRNIRRTMYEHVKEQSQ-MSNVSPLP 148
++Q++ + + H+KE S+ + ++S +P
Sbjct: 698 KDQQKYTKEMIDSHIKEASEEVDDLSMVP 726
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 423 (154.0 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 102/286 (35%), Positives = 157/286 (54%)
Query: 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99
+QVEG+ WL + G+N +L DEMGLGKT+Q I+ ++ L + PGPFLV PLS
Sbjct: 226 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLP 284
Query: 100 GWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVV 159
W++E +FTP++ + Y G +++RR + H+ ++ + P V++T++++
Sbjct: 285 NWMAEFQRFTPEIPTMLYHGSQQERRKL----VNHIHKRKGTLQIHP----VVITSFEIA 336
Query: 160 LMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWA 219
+ D+ L W Y I+DE R+KN L L+ F +LL+TGTP+QNNLSELW+
Sbjct: 337 MRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKR-FNADNKLLLTGTPLQNNLSELWS 395
Query: 220 LMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR-GKIKEQ--FTSLKGILSAFMLRRTKQK 276
L++F +P VF L F S F S +A K +EQ L IL+ F+LRR K
Sbjct: 396 LLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSD 455
Query: 277 LVECGHLMLPPLTEITV---LQKK---VYASILRKELPKLLALSSR 316
+ L +PP E+ V L KK Y +I+ + + + S +
Sbjct: 456 VA----LEVPPKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEK 497
Score = 322 (118.4 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 66/145 (45%), Positives = 91/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VLLF+QMT+ LDIL D+ R +++ RLDGS+ ER + F+
Sbjct: 615 GHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDP--------- 665
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D F+F++STRAGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V+ L
Sbjct: 666 ---DVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT +T+++ I+ RA K +L ++
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKLII 747
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 383 (139.9 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
Identities = 82/201 (40%), Positives = 124/201 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QM + LDIL D++ ++ Y ++RLDG++ + +R AI HF+ A
Sbjct: 690 GHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFN-----------A 738
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G+ F F++STRAGG+G+NL+ ADTVI ++ DWNPQ D QA+ RAHRIGQ NHV
Sbjct: 739 PGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRF 798
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKE--RTAVETDDLRSII-FGLHLFDP 521
V++ TVEE I+ RA +K+ L + ++ + D K +T T++L I+ FG
Sbjct: 799 VSKDTVEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNELSQILKFGAGTMFK 858
Query: 522 KAINNEESDDLRLSGLNSMVE 542
+ N ++ ++L L + S E
Sbjct: 859 ENNNQQKLENLNLDDVLSHAE 879
Score = 377 (137.8 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
Identities = 84/199 (42%), Positives = 118/199 (59%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ Q+ GL+W+ + N +L DEMGLGKT+Q ++FLS+L +++ GP LV+ PL
Sbjct: 361 ELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPL 420
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W K+ P + + Y+G E R+ IR YE + N P F+VLLTT
Sbjct: 421 STVPAWQETFEKWAPDVNCVYYLGNGEARKTIRE--YELYNQ-----NRKP-KFNVLLTT 472
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+ +L D+ L W + +DEA RLKN S LY L+ F + RLL+TGTP+QNN+
Sbjct: 473 YEYILKDKNELGAFKWQFLAVDEAHRLKNAESSLYEALKG-FKVSNRLLITGTPLQNNVK 531
Query: 216 ELWALMHFCMPSVFGTLNQ 234
EL AL +F MP F T++Q
Sbjct: 532 ELAALCNFLMPGKF-TIDQ 549
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 423 (154.0 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 110/326 (33%), Positives = 172/326 (52%)
Query: 2 KYKERLQVAAKIIHDNDER-DGQ-TPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVL 59
+ E ++ K D + +GQ P + ++ +QVEG+ WL + G+N +
Sbjct: 186 RLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGI 245
Query: 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVG 119
L DEMGLGKT+Q I+ ++ L + PGPFLV PLS W++E +FTP + + Y G
Sbjct: 246 LADEMGLGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHG 304
Query: 120 EREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEA 179
+E+R+ + R +Y K + + + P V++T++++ + D+ L W Y I+DE
Sbjct: 305 TQEERQKLVRNIY---KRKGTLQ-IHP----VVITSFEIAMRDRNALQHCYWKYLIVDEG 356
Query: 180 QRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
R+KN L L+ F +LL+TGTP+QNNLSELW+L++F +P VF L F S F
Sbjct: 357 HRIKNMKCRLIRELKR-FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF 415
Query: 240 KDAVHSSSAPKR-GKIKEQ--FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITV--- 293
S +A K +EQ L IL+ F+LRR K + L +PP E+ V
Sbjct: 416 DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA----LEVPPKREVVVYAP 471
Query: 294 LQKK---VYASILRKELPKLLALSSR 316
L KK Y +I+ + + + S +
Sbjct: 472 LSKKQEIFYTAIVNRTIANMFGSSEK 497
Score = 321 (118.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 66/145 (45%), Positives = 91/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VLLF+QMT LDIL D+ LR +++ RLDGS+ ER + F+ +
Sbjct: 615 GHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEV------- 667
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+F++STRAGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V+ L
Sbjct: 668 -----FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT +T+++ I+ RA K +L ++
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKLII 747
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 405 (147.6 bits), Expect = 2.0e-66, Sum P(2) = 2.0e-66
Identities = 90/221 (40%), Positives = 131/221 (59%)
Query: 18 DERDG---QTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS 74
DE+ G +T + + ++ +Q+ GL+WLI + G++ +L DEMGLGKTLQ IS
Sbjct: 164 DEKHGGSAETVFRESPAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTIS 223
Query: 75 FLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEH 134
FL YL+ GP LV+ P S D W E K+TP++ VL G +E+R + + E
Sbjct: 224 FLGYLRHIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEERAAL---IAER 280
Query: 135 VKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLR 194
+ ++S FDV +T+Y+++L ++ L + W Y IIDEA R+KN S L V+R
Sbjct: 281 LVDES---------FDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIR 331
Query: 195 EHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQF 235
F RLL+TGTP+QNN+ ELWAL++F +P VFG F
Sbjct: 332 L-FNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGDSEAF 371
Score = 348 (127.6 bits), Expect = 2.0e-66, Sum P(2) = 2.0e-66
Identities = 95/277 (34%), Positives = 150/277 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D+ R+Y Y R+DG E+R AAI ++
Sbjct: 506 GSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKP---------- 555
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ FVF+++TRAGG+G+NL AD VI ++ DWNPQ D QA+ RAHRIGQ V
Sbjct: 556 -GSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRF 614
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
+ ++T+EE ++ RA +KL L V+ +V + A D+L S+I H K
Sbjct: 615 LVDNTIEEKVLERAAQKLHLDRLVIQQGRA--QVAAKAAANKDELLSMI--QH-GAAKVF 669
Query: 525 NNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATS 584
N + D+ S + + + AM SG++ R E+N A E+ + + F+S ++
Sbjct: 670 NKDSDGDVVKSADDIQDDDIEAML---ASGES-RTRELN--ARYEKLGIDDLQKFSSESA 723
Query: 585 YPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPE 621
Y D + ++ + V K K+ +N I + R R +
Sbjct: 724 Y-DWNGENF-ALVNKSKDIG---ANWINPAKRERKEQ 755
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 681 (244.8 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 183/537 (34%), Positives = 281/537 (52%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ +L+ +Q+ GL+WLIR Y G+N +L DEMGLGKTLQ IS L+YL + GP +V+
Sbjct: 190 IQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVV 249
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P S W++E+ +F P L ++++G E+RR H++E+ ++ FD+
Sbjct: 250 APKSTLGNWMNEIRRFCPVLRAVKFLGNPEERR--------HIREELLVAG----KFDIC 297
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+T++++ + ++ L + W Y IIDEA R+KN +S+L +R F RLL+TGTP+QN
Sbjct: 298 VTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRL-FSTNYRLLITGTPLQN 356
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS---APKRGKIKEQFTSLKGILSAFM 269
NL ELWAL++F +P VF + F F+ + + + K+ F L+ + S
Sbjct: 357 NLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFL-LRRLKSDVE 415
Query: 270 --LRRTKQKLVECGHLMLPPLTEITVLQKK---VYASILRKELPKLLALSSRTANHQSL- 323
L K+ +++ G + +LQK V RK L + + NH L
Sbjct: 416 KGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLF 475
Query: 324 QN--------------TASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRK 369
Q T +G + RVL+F+QMT+ LDIL+D+L R
Sbjct: 476 QGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRG 535
Query: 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAAD 429
Y Y R+DG+ +ER A+I Y++ G ++ FVF++STRAGG+G+NL AD
Sbjct: 536 YQYCRIDGNTGGDERDASIE----------AYNKPG-SEKFVFLLSTRAGGLGINLATAD 584
Query: 430 TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV 489
VI Y+ DWNPQVD QA RAHRIGQ V TE+ +E ++ RA +KL L V+
Sbjct: 585 VVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVI 644
Query: 490 GDDVVDREVKERTAVETDDLRSII-FGLHL-FDPK--AINNEESDDLRLSGLNSMVE 542
+ E+ V D+L ++ +G + F K I +E+ D + G + E
Sbjct: 645 QQG----RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAE 697
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 449 (163.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 116/317 (36%), Positives = 179/317 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++GL WLI + G+N +L DEMGLGKTLQ ISFLS+L + ++ GPFLV+ P+
Sbjct: 174 QLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGIN-GPFLVVVPV 232
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +E+ KF PK++V +Y+G +++R +I + +Q + +N+ +LT+
Sbjct: 233 STLSNWYNEIRKFAPKIKVTKYIGTKQERNDI------DLLQQQETTNI-------ILTS 279
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y++ + D L +I W Y I+DE RLKN +L +L++ + RLL+TGTP+QNNL+
Sbjct: 280 YEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKK-LNVSNRLLLTGTPLQNNLN 338
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSSAPKRG-------------KIKEQFTSL 261
ELW+L++F +P +F L F F D + + G K+ Q T +
Sbjct: 339 ELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLI 398
Query: 262 KG---ILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLA 312
K IL FMLRR K+ +++ LPP E +T LQKK+Y + +L L
Sbjct: 399 KNLHTILKPFMLRRLKRDVIK----NLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLV 454
Query: 313 LSSRTA----NHQSLQN 325
++ A NH+ L N
Sbjct: 455 ETNLKAFIKFNHEELFN 471
Score = 286 (105.7 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 74/177 (41%), Positives = 101/177 (57%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYE---RLDGSIRAEERFAAIRHFSVQSAIER 399
+SGH+VL+FAQ T+ LD+L+D+LE S+ RLDGS + R I F+
Sbjct: 625 SSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFN------- 677
Query: 400 LYSEAGGNDAF-VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458
N F VF+ STRAGG+G+NLVAADTVI + DWNPQ+D QA+ R HRIGQ+N
Sbjct: 678 ------NNPKFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINP 731
Query: 459 VLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDREVKERTAVETDDLRSII 513
V V + ++EEV++ R+ K L V+ G K+ TA T + + I
Sbjct: 732 VKIFRFVIKDSIEEVLISRSGSKRFLERLVIQMGQFKFSNFNKKLTAATTSNEQGAI 788
Score = 41 (19.5 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLP 148
NI +T E +EQ+ ++ +P+P
Sbjct: 77 NILQTSLERKEEQNNVAPPAPVP 99
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 449 (163.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 116/317 (36%), Positives = 179/317 (56%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q++GL WLI + G+N +L DEMGLGKTLQ ISFLS+L + ++ GPFLV+ P+
Sbjct: 174 QLKDYQMDGLEWLITLFQNGLNGILADEMGLGKTLQCISFLSHLIENGIN-GPFLVVVPV 232
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W +E+ KF PK++V +Y+G +++R +I + +Q + +N+ +LT+
Sbjct: 233 STLSNWYNEIRKFAPKIKVTKYIGTKQERNDI------DLLQQQETTNI-------ILTS 279
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y++ + D L +I W Y I+DE RLKN +L +L++ + RLL+TGTP+QNNL+
Sbjct: 280 YEISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKK-LNVSNRLLLTGTPLQNNLN 338
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSSAPKRG-------------KIKEQFTSL 261
ELW+L++F +P +F L F F D + + G K+ Q T +
Sbjct: 339 ELWSLLNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLI 398
Query: 262 KG---ILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLA 312
K IL FMLRR K+ +++ LPP E +T LQKK+Y + +L L
Sbjct: 399 KNLHTILKPFMLRRLKRDVIK----NLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLV 454
Query: 313 LSSRTA----NHQSLQN 325
++ A NH+ L N
Sbjct: 455 ETNLKAFIKFNHEELFN 471
Score = 286 (105.7 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 74/177 (41%), Positives = 101/177 (57%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYE---RLDGSIRAEERFAAIRHFSVQSAIER 399
+SGH+VL+FAQ T+ LD+L+D+LE S+ RLDGS + R I F+
Sbjct: 625 SSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFN------- 677
Query: 400 LYSEAGGNDAF-VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458
N F VF+ STRAGG+G+NLVAADTVI + DWNPQ+D QA+ R HRIGQ+N
Sbjct: 678 ------NNPKFKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINP 731
Query: 459 VLSINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDREVKERTAVETDDLRSII 513
V V + ++EEV++ R+ K L V+ G K+ TA T + + I
Sbjct: 732 VKIFRFVIKDSIEEVLISRSGSKRFLERLVIQMGQFKFSNFNKKLTAATTSNEQGAI 788
Score = 41 (19.5 bits), Expect = 6.4e-21, Sum P(2) = 6.4e-21
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLP 148
NI +T E +EQ+ ++ +P+P
Sbjct: 77 NILQTSLERKEEQNNVAPPAPVP 99
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 400 (145.9 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 104/299 (34%), Positives = 155/299 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L P+Q+EGL+WL + G + +L DEMGLGKT+Q+++FL L GPFL+ PL
Sbjct: 601 KLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPL 660
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVK-------EQSQMSNVSPLP 148
S W E ++ P V+ YVG R+ R +R + V+ + S+M +
Sbjct: 661 STIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMK 720
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
F VLLT+Y+ + MD+ LS I W ++DEA RLKN S+ + L E + + R+L+TGT
Sbjct: 721 FHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNE-YTIHYRVLLTGT 779
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL EL+ L++F F L F + F + K ++Q L +L
Sbjct: 780 PLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEI---------SK-EDQIEKLHNLLGPH 829
Query: 269 MLRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325
MLRR K ++ L E++ +QKK Y +IL + L + T SL N
Sbjct: 830 MLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVKNGGT--QMSLMN 886
Score = 359 (131.4 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 78/167 (46%), Positives = 107/167 (64%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GHRVL+F+QMT+ LDI++D E Y YER+DGSI + R Q AI+R Y+
Sbjct: 940 DGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMR---------QDAIDR-YN 989
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
A G F+F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHR+GQ + V+
Sbjct: 990 -APGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIY 1048
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
VT+ +VEE I A++K+ L+H VV + +E K + E DD+
Sbjct: 1049 RFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTELDDV 1095
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 400 (145.9 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 104/299 (34%), Positives = 155/299 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L P+Q+EGL+WL + G + +L DEMGLGKT+Q+++FL L GPFL+ PL
Sbjct: 601 KLHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPL 660
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVK-------EQSQMSNVSPLP 148
S W E ++ P V+ YVG R+ R +R + V+ + S+M +
Sbjct: 661 STIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMK 720
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
F VLLT+Y+ + MD+ LS I W ++DEA RLKN S+ + L E + + R+L+TGT
Sbjct: 721 FHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNE-YTIHYRVLLTGT 779
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL EL+ L++F F L F + F + K ++Q L +L
Sbjct: 780 PLQNNLEELFHLLNFLSKERFNQLEAFTAEFNEI---------SK-EDQIEKLHNLLGPH 829
Query: 269 MLRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325
MLRR K ++ L E++ +QKK Y +IL + L + T SL N
Sbjct: 830 MLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVKNGGT--QMSLMN 886
Score = 359 (131.4 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 78/167 (46%), Positives = 107/167 (64%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GHRVL+F+QMT+ LDI++D E Y YER+DGSI + R Q AI+R Y+
Sbjct: 940 DGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMR---------QDAIDR-YN 989
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
A G F+F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHR+GQ + V+
Sbjct: 990 -APGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIY 1048
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
VT+ +VEE I A++K+ L+H VV + +E K + E DD+
Sbjct: 1049 RFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTELDDV 1095
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 400 (145.9 bits), Expect = 3.5e-66, Sum P(2) = 3.5e-66
Identities = 81/203 (39%), Positives = 123/203 (60%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+W+I Y G+N +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 143 LRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 202
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L+ + +G +++R R + + P +DV +T+Y
Sbjct: 203 TLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDV------------MMPGEWDVCVTSY 250
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L + RE F RLL+TGTP+QNNL E
Sbjct: 251 EMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIARE-FKTTNRLLLTGTPLQNNLHE 309
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LW+L++F +P VF + + F S F
Sbjct: 310 LWSLLNFLLPDVFNSASDFDSWF 332
Score = 350 (128.3 bits), Expect = 3.5e-66, Sum P(2) = 3.5e-66
Identities = 89/223 (39%), Positives = 126/223 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R + Y RLDG+ E R AI F+ A
Sbjct: 461 GSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFN-----------A 509
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+FM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V L
Sbjct: 510 PNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRL 569
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGL-HLFDPK 522
+T++TVEE I+ RAE KLRL V+ R + ++ + D++ +I G H+F K
Sbjct: 570 ITDNTVEERIVERAEMKLRLDSIVIQQG---RLIDQQNKLGKDEMLQMIRHGATHVFASK 626
Query: 523 --AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVN 563
+ +E+ D + G E + R + + + R F V+
Sbjct: 627 DSELTDEDIDTILERGAKKTAE--MNERMQNLGESSLRNFTVD 667
Score = 247 (92.0 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L + RE F RLL+
Sbjct: 240 PGEWDVCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIARE-FKTTNRLLL 298
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELW+L++F +P VF + + F S F ++ K+ E+ L +L
Sbjct: 299 TGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWF-----DTNCLGDQKLVER---LHAVL 350
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKEL 307
F+LRR K ++ + LPP E+ + +Q++ Y IL K++
Sbjct: 351 RPFLLRRIKAEVEKS----LPPKKEVKIYLGLSKMQREWYTRILMKDI 394
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 686 (246.5 bits), Expect = 3.9e-66, P = 3.9e-66
Identities = 197/610 (32%), Positives = 314/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 492 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 551
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 552 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 604
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 605 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 663
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 664 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 723
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 724 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 783
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 784 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 842
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 843 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 891
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 892 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 951
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 952 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 1008
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE +G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 1009 KR--AETHENEAGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1065
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1066 RLEEEERQKE 1075
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 685 (246.2 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 197/610 (32%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 478 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 537
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 538 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 590
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 591 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 649
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 650 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 709
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 710 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 769
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 770 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 828
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 829 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 877
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 878 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 937
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 938 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 994
Query: 542 EKVIAMRHEQVSG--KAG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 995 KR--AETHENEPGPLSVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEEQRR 1051
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1052 RLEEEERQKE 1061
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 410 (149.4 bits), Expect = 4.7e-66, Sum P(2) = 4.7e-66
Identities = 104/289 (35%), Positives = 156/289 (53%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL W+I Y +N +L DEMGLGKT+Q IS ++++ + + GPFLV+
Sbjct: 533 VGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHIIERKRNNGPFLVI 592
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G R K+Q Q N+ F VL
Sbjct: 593 VPLSTLTNWNLEFEKWAPSVSRIVYKGPPNAR-----------KQQQQ--NIRWGNFQVL 639
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ LS+I W + I+DE R+KN S L + L +++ RL++TGTP+QN
Sbjct: 640 LTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQN 699
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-----FTSLKGILSA 267
NL ELWAL++F +P++F ++ F F ++ R + E+ L +L
Sbjct: 700 NLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRP 759
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K K VE LP E + K S L+ +L K LA ++
Sbjct: 760 FLLRRLK-KDVEKD---LPDKQERVI---KCRFSALQAKLNKQLATHNK 801
Score = 342 (125.4 bits), Expect = 4.7e-66, Sum P(2) = 4.7e-66
Identities = 83/206 (40%), Positives = 128/206 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F QMTQ ++I++DFL LR Y RLDGS ++++R S + +L++
Sbjct: 871 TGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDR----------SDLLKLFN- 919
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A ++ F F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 920 APDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILR 979
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREV--KERTAVETDDLRSIIFGLHLFDP 521
L+T ++VEE I+ RA+ KL + V+ D + +ER A+ LR+++ D
Sbjct: 980 LITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDAL----LRTLLETAEGTD- 1034
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAM 547
+A + +E DD L+ + + ++ +A+
Sbjct: 1035 QAGDQDEMDDDDLNNIMARSDEELAV 1060
Score = 37 (18.1 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 120 EREQRRNIRRTMYEHVK 136
ERE++R + RT + ++
Sbjct: 417 EREEQRRVERTAKQRLQ 433
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 422 (153.6 bits), Expect = 5.1e-66, Sum P(2) = 5.1e-66
Identities = 98/295 (33%), Positives = 157/295 (53%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+EGL W++ Y N +L DEMGLGKT+Q I+ ++YL S+ GP L+L P
Sbjct: 385 ELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPK 444
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
+V W +E A + P + Y G +E+R IR + ++ F+VL+T
Sbjct: 445 AVLPNWENEFALWAPSISAFLYDGSKEKRTEIR-------------ARIAGGKFNVLITH 491
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
YD+++ D+ FL +I W Y I+DE RLKN L L + + RRLL+TGTPIQN+L
Sbjct: 492 YDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQ 551
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQF--TSLKGILSAFMLRRT 273
ELW+L++F +P +F +++ F F + +E L ++ F+LRR
Sbjct: 552 ELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRK 611
Query: 274 KQKLVECGHLMLPPLTEITV-LQKKVYASILRKELPKL--LALSSRTANHQSLQN 325
K ++ + LP T++ + + + K++ + + L S +SLQN
Sbjct: 612 KSEVEK----FLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQN 662
Score = 323 (118.8 bits), Expect = 5.1e-66, Sum P(2) = 5.1e-66
Identities = 79/230 (34%), Positives = 130/230 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHR+LLF+QMT+ +D+L+ +L L Y Y RLDGS + ++R ++ F+ + Y
Sbjct: 710 AGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSP---Y-- 764
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
F+F++STRAGG+GLNL ADT+I ++ DWNPQ+D+QA RAHRIGQ V
Sbjct: 765 ------FMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 818
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKA 523
LV+ ++EEVI+ RA++K+ + V+ + + T D R ++ + +
Sbjct: 819 LVSIGSIEEVILERAKQKMGIDAKVIQAGLFN------TTSTAQDRREMLEEIMSKGTSS 872
Query: 524 INNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDL 573
+ + + ++ L + E+ M EQ+ + RK E L+EE ++
Sbjct: 873 LGEDVPSEREINRLAARTEEEFWM-FEQMDEER-RKKENYKTRLMEEKEV 920
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 684 (245.8 bits), Expect = 5.7e-66, P = 5.7e-66
Identities = 196/610 (32%), Positives = 310/610 (50%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 480 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 539
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R IR + H Q++ L F++LLTT
Sbjct: 540 STLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTH--HQTKR-----LKFNILLTT 592
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 593 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 651
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 652 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 711
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 712 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 771
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 772 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 830
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 831 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 879
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 880 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 939
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 940 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 996
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 997 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1053
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1054 RLEEEERQKE 1063
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 684 (245.8 bits), Expect = 5.7e-66, P = 5.7e-66
Identities = 197/610 (32%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 479 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 538
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 539 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 591
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 592 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 650
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 651 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 710
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 711 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 770
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 771 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 829
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 830 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 878
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 879 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 938
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 939 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 995
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 996 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1052
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1053 RLEEEERQKE 1062
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 684 (245.8 bits), Expect = 6.2e-66, P = 6.2e-66
Identities = 197/610 (32%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 462 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 521
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 522 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 574
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 575 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 633
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 634 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 693
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 694 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 753
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 754 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 812
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 813 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 861
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHRIGQ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 862 VIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 921
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 922 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 978
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 979 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1035
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1036 RLEEEERQKE 1045
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 424 (154.3 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 106/305 (34%), Positives = 161/305 (52%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V +LK +Q+ GL W+I Y +N +L DEMGLGKT+Q IS +++L + GPFLV+
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVI 472
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E ++ P + + Y G + +R+ ++ V+ SN F VL
Sbjct: 473 VPLSTLTNWTMEFERWAPSIVKIVYKGPPQ----VRKALHPQVRH----SN-----FQVL 519
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ LS+I W Y IIDE R+KN S L N L ++ RL++TGTP+QN
Sbjct: 520 LTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQN 579
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-----FTSLKGILSA 267
NL ELWAL++F +P +F ++ F F ++ + ++ E+ L +L
Sbjct: 580 NLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRP 639
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKLLALSSRTANHQ 321
F+LRR K K VE LP E + LQ+K+Y + + + + +
Sbjct: 640 FLLRRLK-KDVEAE---LPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIK 695
Query: 322 SLQNT 326
LQNT
Sbjct: 696 GLQNT 700
Score = 321 (118.1 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
Identities = 74/174 (42%), Positives = 107/174 (61%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ SGHR+L+F QMTQ ++I++D+L R++ Y RLDGS +A++R + F+ +A
Sbjct: 749 FRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTA----- 803
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+ +F++STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ V
Sbjct: 804 ------EVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRI 857
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREV--KERTAVETDDLRSII 513
L+TE +VEE I+ RA+ KL + V+ D + +ER A LRS++
Sbjct: 858 YRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAF----LRSLL 907
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 392 (143.0 bits), Expect = 8.9e-66, Sum P(2) = 8.9e-66
Identities = 99/286 (34%), Positives = 145/286 (50%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G +L P+Q+EG++WL + G++ +L DEMGLGKT+Q ++FL L GPFLV
Sbjct: 725 GTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLV 784
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPL---- 147
PLS W E + P + Y+G+++ R IR + + S VS L
Sbjct: 785 AVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQ 844
Query: 148 -PFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
F+VLLT+Y+++ MD L I W ++DEA RLK+ S + +L + + +LL+T
Sbjct: 845 YKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNS-YTIAYKLLLT 903
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266
GTP+QNNL EL+ L++F F L F F D K +EQ L +L
Sbjct: 904 GTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADV---------SK-EEQVKRLHEMLG 953
Query: 267 AFMLRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKL 310
MLRR K +++ E++ +QKK Y IL K L
Sbjct: 954 PHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEAL 999
Score = 364 (133.2 bits), Expect = 8.9e-66, Sum P(2) = 8.9e-66
Identities = 98/248 (39%), Positives = 139/248 (56%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LDIL+DFLE +Y YER+DG I R Q AI+R A
Sbjct: 1069 HRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLR---------QEAIDRF--NAP 1117
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G FVF++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1118 GAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1177
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T ++VEE + + A+RK+ L+H VV + + T E DD+ + FG LF K
Sbjct: 1178 TRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANF-TKQELDDI--LRFGTEDLF--KED 1232
Query: 525 NNEES---DDLRLSGL----NSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHE 577
+ EE+ DD ++ L N +E+ + +E +S + EE++++ +
Sbjct: 1233 DKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQD 1292
Query: 578 SFASATSY 585
+ S +Y
Sbjct: 1293 AENSDPAY 1300
Score = 43 (20.2 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 478 AERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGL 537
AE K ++ ++ D EVKE E + + + P + +++ DD+ +
Sbjct: 1625 AEVKTEVAKTEPKEETKDPEVKEEPKTEEKE-KEKVDDKKPIPPTTVIDDDDDDVMIVKE 1683
Query: 538 NSMVEK 543
+ +EK
Sbjct: 1684 DGELEK 1689
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 416 (151.5 bits), Expect = 9.3e-66, Sum P(2) = 9.3e-66
Identities = 102/286 (35%), Positives = 158/286 (55%)
Query: 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99
+QVEG+ WL + G+N +L DEMGLGKT+Q I+ ++ L + PGPFLV PLS
Sbjct: 227 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLP 285
Query: 100 GWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVV 159
W++E +FTP + + Y G +++RR + + ++ K + + + P V++T++++
Sbjct: 286 NWMAEFQRFTPDIPTMLYHGTQQERRKLVKNIH---KRKGTLQ-IHP----VVITSFEIA 337
Query: 160 LMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWA 219
+ D+ L W Y I+DE R+KN L L+ F +LL+TGTP+QNNLSELW+
Sbjct: 338 MRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR-FNADNKLLLTGTPLQNNLSELWS 396
Query: 220 LMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR-GKIKEQ--FTSLKGILSAFMLRRTKQK 276
L++F +P VF L F S F S +A K +EQ L IL+ F+LRR K
Sbjct: 397 LLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSD 456
Query: 277 LVECGHLMLPPLTEITV---LQKK---VYASILRKELPKLLALSSR 316
+ L +PP E+ V L KK Y +I+ + + + S +
Sbjct: 457 VA----LEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGCSEK 498
Score = 323 (118.8 bits), Expect = 9.3e-66, Sum P(2) = 9.3e-66
Identities = 66/145 (45%), Positives = 91/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VLLF+QMT+ LDIL D+ R +++ RLDGS+ ER + F+
Sbjct: 616 GHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDP--------- 666
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D F+F++STRAGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V+ L
Sbjct: 667 ---DVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 723
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT +T+++ I+ RA K +L ++
Sbjct: 724 VTANTIDQKIVERAAAKRKLEKLII 748
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 676 (243.0 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 205/613 (33%), Positives = 309/613 (50%)
Query: 22 GQTPVDAAEFGVTA-ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80
G T +D ++A L+ +Q+EGL+WL+ ++ NV+L DEMGLGKT+Q ISFLSYL
Sbjct: 739 GFTKLDTQPSWISAGTLRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLF 798
Query: 81 FSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQ 140
Q GPFLV+ PLS + W E AK+ P + V+ Y G + R IR +YE ++
Sbjct: 799 NEQDIKGPFLVVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDIIR--LYEFYTT-NR 855
Query: 141 MSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMP 200
+ L F+VLLTTYD +L D+ L I W + +DEA RLKN SVL+ VL+ +
Sbjct: 856 LGK-KKLNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKL-YNTT 913
Query: 201 RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260
RLL+TGTP+QN+L ELW L++F MP+ F +L F + D K +Q
Sbjct: 914 NRLLVTGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQYSDL----------KENDQIAQ 963
Query: 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITV--LQKKVYASILRK---ELPK------ 309
L +L +LRR K+ + + + + + +QKK Y IL K EL K
Sbjct: 964 LHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGEKT 1023
Query: 310 -LLALSS---RTANHQSL-QNTASGXXXXXXXXXXXXYN-SGHRVLL---FAQMTQT--- 357
LL + + +T NH L QN SG VLL ++ +T
Sbjct: 1024 TLLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHR 1083
Query: 358 LDILQDFLELRKYSYERLDG-SIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST 416
+ I + + + L G S + + ++ A++R ++ D F F++ST
Sbjct: 1084 VLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDR-FNAVDSPD-FCFLLST 1141
Query: 417 RAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMR 476
+AGG+G+NL ADTVI ++ DWNPQ D QA RAHRIGQ NHV LV++ +VEE I+
Sbjct: 1142 KAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILE 1201
Query: 477 RAERKLRLSHNVVGDDVVDREVKERT-----AVETDDLRSII-FGLH-LFDPKAINNEES 529
RA++K+ L H V+ + K T ++L +I+ FG LF EE+
Sbjct: 1202 RAKQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAEELFKE---TGEEA 1258
Query: 530 DDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYPDLD 589
+ + ++ ++ + R S AG + +N + S E +AT +
Sbjct: 1259 NPIEEMDIDEILSRA-ETREASDSTTAGEEL-LNSFRVANFSTTSKEEQ-QNATWEDIIP 1315
Query: 590 EASYRSWVEKFKE 602
+A + V++ K+
Sbjct: 1316 DADRQKAVQEEKD 1328
Score = 38 (18.4 bits), Expect = 1.2e-65, Sum P(2) = 1.2e-65
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 576 HESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPEDKQ 624
H S Y D D S R + + S +SS++ + S R ++ E +
Sbjct: 1727 HHSDDDDDDYRDKDSNSGRG---RGRGRSSNSSSSSSSSSRNKNHESDE 1772
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 427 (155.4 bits), Expect = 2.2e-65, Sum P(2) = 2.2e-65
Identities = 106/304 (34%), Positives = 170/304 (55%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LKP+Q++GL W++ Y +N +L DEMGLGKT+Q I+ +SYL + + GPFLV+ PL
Sbjct: 1710 KLKPYQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKKNNGPFLVVVPL 1769
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E +K+ PK++ + Y G++ R++ +E ++P F+ ++TT
Sbjct: 1770 STLSNWGQEFSKWAPKVKRVLYYGDKPARKS----KFEEF--------IAPGQFNAVVTT 1817
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+ ++ D+ LS+I W Y I+DE R+KN +S L +L + RLL+TGTP+QN+L
Sbjct: 1818 YEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSLP 1877
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAFMLR 271
ELWAL++F +P++F + F F +A + + K +E+ L +L F+LR
Sbjct: 1878 ELWALLNFLLPTIFDCVEDFEQWF-NAPFAQTGEKIEMNEEEQLLIIQRLHKVLRPFLLR 1936
Query: 272 RTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLALSSRTANHQ---S 322
R K++ VE LP E ++ Q K+Y I K + KL + N +
Sbjct: 1937 RLKKE-VEA---QLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGADGNPKLAKG 1992
Query: 323 LQNT 326
L+NT
Sbjct: 1993 LKNT 1996
Score = 325 (119.5 bits), Expect = 2.2e-65, Sum P(2) = 2.2e-65
Identities = 68/146 (46%), Positives = 95/146 (65%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F+QMTQ ++IL+ F + Y + RLDGS +++ER + F+
Sbjct: 2041 AGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFN----------- 2089
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
A ++ F+F++STRAGG+GLNL ADTVI ++ DWNPQ+D QA RAHRIGQ V +
Sbjct: 2090 APNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLR 2149
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVV 489
LVT H+VEE I+ RA K L ++
Sbjct: 2150 LVTAHSVEESILARANFKKELDKKII 2175
Score = 40 (19.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 121 REQRRNIRRTMYEHVKEQSQ 140
++Q N+++ EH+++Q Q
Sbjct: 1010 QQQSENLQQQQPEHLQQQQQ 1029
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 424 (154.3 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 106/301 (35%), Positives = 168/301 (55%)
Query: 21 DGQ-TPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79
+GQ P + ++ +QVEG+ WL + G+N +L DEMGLGKT+Q I+ ++ L
Sbjct: 205 NGQPVPFQQPKIFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIA-L 263
Query: 80 KFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQS 139
+ PGPFLV PLS W+SE +FTP++ ++ Y G +++RR + R + H ++ S
Sbjct: 264 MVERGVPGPFLVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRKI--HGRQGS 321
Query: 140 QMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
+ P V++T++++ + D+ L W Y I+DE R+KN + L L+ F
Sbjct: 322 L--KIHP----VVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKR-FNA 374
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSSAPKRGKIKEQ- 257
+LL+TGTP+QNNL+ELW+L++F +P VF L F S F ++ ++ K KEQ
Sbjct: 375 DNKLLLTGTPLQNNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQN 434
Query: 258 -FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSR 316
L IL+ F+LRR K + L +PP E+ V YA + +K+ A+ +R
Sbjct: 435 ILHMLHQILTPFLLRRLKSDVA----LEVPPKREVVV-----YAPLAKKQETFYTAIVNR 485
Query: 317 T 317
T
Sbjct: 486 T 486
Score = 309 (113.8 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 64/145 (44%), Positives = 90/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QMT LDIL D+ LR + + RLDGS+ +R + F+
Sbjct: 615 GHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFN------------ 662
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+ F+F++STRAGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V+ L
Sbjct: 663 NDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT +T+++ I+ RA K +L ++
Sbjct: 723 VTANTIDQKIVERAAAKRKLEKLII 747
Score = 40 (19.1 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 127 IRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM 161
I RT E VKE+ + P+ +V L +++++
Sbjct: 532 INRTQEEVVKERPVVEVSMPMDSEVNLKLQNIMML 566
Score = 38 (18.4 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 234 QFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVE 279
Q + + A S+ R K + I S F+L + +Q+ +E
Sbjct: 46 QMMEKARSAWDRESSEMRYKRLQHLLEKSNIYSKFLLTKMEQQQLE 91
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 422 (153.6 bits), Expect = 3.4e-65, Sum P(2) = 3.4e-65
Identities = 91/252 (36%), Positives = 146/252 (57%)
Query: 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFL 90
F + LK +Q++GL W++ Y +N +L DEMGLGKT+Q I ++YL + GP+L
Sbjct: 720 FLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRLNGPYL 779
Query: 91 VLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFD 150
++ PLS WV E+ K+ P + + Y G RR++ + + F+
Sbjct: 780 IIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSL-------------VPQLRSGKFN 826
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
VL+TTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+
Sbjct: 827 VLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPL 886
Query: 211 QNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGIL 265
QN L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 887 QNKLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVL 944
Query: 266 SAFMLRRTKQKL 277
F+LRR K+++
Sbjct: 945 RPFLLRRLKKEV 956
Score = 321 (118.1 bits), Expect = 3.4e-65, Sum P(2) = 3.4e-65
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + IL+D+ R + Y RLDG+ ++E+R ++ F+ +
Sbjct: 1067 TNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEE--------- 1117
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1118 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1175
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1176 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1209
Score = 39 (18.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1174 LRLCTVNSVEEKILA 1188
Score = 37 (18.1 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
E EE+ ++R +R+ + +V +D D+ K R
Sbjct: 1337 EEIEEEIRLKRRKRRRHVDKDVRREDG-DKAKKRR 1370
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 405 (147.6 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 85/199 (42%), Positives = 121/199 (60%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
++ +QV GL+WLI+ Y G+N +L DEMGLGKTLQ IS L YL + GP L++ P S
Sbjct: 276 MRDYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAPKS 335
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
GW E ++ P L V+R+ G +E+R +I++ K FDV +TTY
Sbjct: 336 TLSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFKK------------FDVCITTY 383
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+V + ++ + W Y IIDEA R+KN +SVL +R F RLL+TGTP+QNNL E
Sbjct: 384 EVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRM-FNSQFRLLITGTPLQNNLHE 442
Query: 217 LWALMHFCMPSVFGTLNQF 235
LW+L++F +P VF + + F
Sbjct: 443 LWSLLNFLLPDVFSSSDDF 461
Score = 337 (123.7 bits), Expect = 4.0e-65, Sum P(2) = 4.0e-65
Identities = 92/272 (33%), Positives = 148/272 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QM++ LDIL+D++ R Y Y R+DGS + +R S+++ Y++
Sbjct: 597 GSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTES-----IVRENSIEN-----YNKP 646
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G +D F F+++TRAGG+G+ L AD VI ++ DWNPQ+D QA RAHRIGQ V
Sbjct: 647 G-SDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRF 705
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-LFDPK 522
VTE+++EE ++ +AE KL+L V+ R V+ + ++L +++ FG +F K
Sbjct: 706 VTENSMEEKMVEKAEMKLQLDALVIQQG---RLVEANKNAKPEELLAMLRFGADDIFKSK 762
Query: 523 A--INNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFA 580
+ I +E+ D + G EK EQ++ K + NP+ + +L M +
Sbjct: 763 SSTITDEDIDSILKKG----EEKT-----EQLNSKV-KDLASNPLKFQSDGNLYMFDGVN 812
Query: 581 SATSYPDLDEASYRSWVEKFKEASESSSNTIA 612
S+ A Y W E K ++ + T+A
Sbjct: 813 YKNSH---SSAGY--WAETLKRERKTVAGTVA 839
Score = 249 (92.7 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 63/165 (38%), Positives = 94/165 (56%)
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
FDV +TTY+V + ++ + W Y IIDEA R+KN +SVL +R F RLL+TGT
Sbjct: 376 FDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRM-FNSQFRLLITGT 434
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL ELW+L++F +P VF + + F F A ++ + +E L +L F
Sbjct: 435 PLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDLANNTENQ------QEVIDKLHKVLRPF 488
Query: 269 MLRRTKQKLVECGHLMLPPLTEI------TVLQKKVYASILRKEL 307
+LRR K ++ + LPP EI + +QK+ Y +L K+L
Sbjct: 489 LLRRIKTEVEKS----LPPKKEIKLFVGLSTMQKEWYKRLLSKDL 529
Score = 38 (18.4 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 569 EESDLLMHESFASATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPEDKQ 624
EE DL E + D + +R+++ + + +IAE + ++ ++ Q
Sbjct: 916 EEQDL--KERLIKTGGFGDWSKTDFRTFIRGCELYGRKAYQSIAEEVQTKTEKEVQ 969
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 422 (153.6 bits), Expect = 4.4e-65, Sum P(3) = 4.4e-65
Identities = 91/255 (35%), Positives = 146/255 (57%)
Query: 26 VDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS 85
V+ + V LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+F++YL +
Sbjct: 858 VEQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQ 917
Query: 86 PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVS 145
GPFL++ PLS W+ E K+ P ++ + Y G + +R+T+ ++ SN
Sbjct: 918 QGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQ----LRKTLQSQIRS----SN-- 967
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
F+VLLTT++ ++ D+ LS+I W + IIDE R+KN S L + L ++ RL++
Sbjct: 968 ---FNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLIL 1024
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA-VHSSSAPKRGKIKEQ----FTS 260
TGTP+QNNL ELWAL++F +P +F ++ F F ++ K G +E+
Sbjct: 1025 TGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKR 1084
Query: 261 LKGILSAFMLRRTKQ 275
L +L F+ RR K+
Sbjct: 1085 LHKVLRPFLFRRLKK 1099
Score = 320 (117.7 bits), Expect = 4.4e-65, Sum P(3) = 4.4e-65
Identities = 71/172 (41%), Positives = 105/172 (61%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GH+ L+F QMTQ + I++D+L + + Y RLDGS ++++R + + F+ +
Sbjct: 1202 TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKS------- 1254
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
D ++FM+STRAGG+GLNL ADTVI ++ DWNP D QA RAHRIGQ V +
Sbjct: 1255 ----DVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILR 1310
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREV--KERTAVETDDLRSII 513
L+TE ++EE I+ RA+ KL L V+ D + +ER A LRS++
Sbjct: 1311 LITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAF----LRSLL 1358
Score = 47 (21.6 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 486 HNVVGDDVVDREVKERTAVET-DDLRSIIFGLHLFDPKAINNEES 529
H++V +D ++ E+T E +DL LH ++ +A+N E++
Sbjct: 1602 HSIVYEDA---KLMEKTLKEVIEDLEKNN-SLHAYEEEALNEEQA 1642
Score = 44 (20.5 bits), Expect = 4.4e-65, Sum P(3) = 4.4e-65
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 606 SSSNTIAESGRRRSPEDKQ 624
S +++A SGR+ +P KQ
Sbjct: 1497 SQESSLARSGRKNTPSYKQ 1515
Score = 40 (19.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 70 LQAISFLSYLKFSQMSPGPFL 90
L AI+ +Y + S SP P++
Sbjct: 348 LDAINAKTYFQSSSNSPAPYV 368
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 675 (242.7 bits), Expect = 5.8e-65, P = 5.8e-65
Identities = 195/610 (31%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 474 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 533
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 534 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 586
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 587 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 645
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 646 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 705
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 706 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 765
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 766 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 824
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 825 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 873
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHR G ++ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 874 VIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 933
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 934 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 990
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 991 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1047
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1048 RLEEEERQKE 1057
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 675 (242.7 bits), Expect = 5.8e-65, P = 5.8e-65
Identities = 195/610 (31%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 474 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 533
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 534 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 586
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 587 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 645
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 646 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 705
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 706 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 765
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 766 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 824
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 825 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 873
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHR G ++ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 874 VIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 933
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 934 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 990
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 991 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1047
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1048 RLEEEERQKE 1057
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 675 (242.7 bits), Expect = 5.8e-65, P = 5.8e-65
Identities = 195/610 (31%), Positives = 313/610 (51%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 475 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 534
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 535 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 587
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 588 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 646
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 647 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 706
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 707 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 766
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 767 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 825
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI+ E R A+ HF+ + G++ F F++STRAGG+G+NL +ADTV
Sbjct: 826 FQRLDGSIKGELRKQALDHFNAE-----------GSEDFCFLLSTRAGGLGINLASADTV 874
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ ++ DWNPQ D QA RAHR G ++ V LVT+ +VEE I+ RA++K+ L H V+
Sbjct: 875 VIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 934
Query: 492 -DVVDREV-------KERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMV 541
D + V T ++L +I+ FG LF K EE + + ++ ++
Sbjct: 935 MDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELF--KEPEGEEQEPQEMD-IDEIL 991
Query: 542 EKVIAMRHEQVSGK--AG----RKFEVNPVALLEESDLLMHESFASATSYPDLDEASYRS 595
++ A HE G G +F+V + ++E D+ + E ++ ++ ++ R
Sbjct: 992 KR--AETHENEPGPLTVGDELLSQFKVANFSNMDEDDIEL-EPERNSKNWEEIIPEDQRR 1048
Query: 596 WVEKFKEASE 605
+E+ + E
Sbjct: 1049 RLEEEERQKE 1058
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 415 (151.1 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 2 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 61
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 62 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 108
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 109 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 168
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 169 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 227
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 228 LLRRLKKE-VEA---QLPEKVEYVI 248
Score = 315 (115.9 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 347 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 397
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 398 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 455
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 456 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 489
Score = 39 (18.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 454 LRLCTVNSVEEKILA 468
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 663 (238.4 bits), Expect = 1.3e-64, P = 1.3e-64
Identities = 188/578 (32%), Positives = 294/578 (50%)
Query: 12 KIIHDNDERDGQTPVDAAEFGV-TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTL 70
+++ D + D D + F + E++ +QV GL+WL +N +L DEMGLGKTL
Sbjct: 106 EMVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTL 165
Query: 71 QAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRT 130
Q IS + Y+K + P LV+ P S W +E K+ P + + +G+ R + R
Sbjct: 166 QTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRD 225
Query: 131 MYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLY 190
+ + P FDV TTY+++L + L ++ W Y IIDEA R+KN S L
Sbjct: 226 V------------ILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLS 273
Query: 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFK-DAVHSSS-- 247
+RE RLL+TGTP+QNNL ELWAL++F +P +F + + F S F DA+ ++
Sbjct: 274 ETVRE-LNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDL 332
Query: 248 APKRGKIKEQFT--SLKGILSAFMLRRTKQKL-VECGHLMLPPLTEITVLQKKVY---AS 301
+ K+ + F +K + +L + + K+ V + T++ + +
Sbjct: 333 VQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDIDIINGAGK 392
Query: 302 ILRKELPKLLALSSRTANHQSLQNTA---------------SGXXXXXXXXXXXXYNSGH 346
+ + L +L + NH L + A SG G
Sbjct: 393 VEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQGS 452
Query: 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406
RVL+F+Q ++ LD+L+DF R Y Y RLDGS E+R +AIE Y+ A
Sbjct: 453 RVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDR---------SNAIEA-YN-APD 501
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466
+ F+FM++TRAGG+G+NL AD VI Y+ DWNPQ D QA+ RAHRIGQ V L+T
Sbjct: 502 SKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLIT 561
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAIN 525
E+TV+E I+ +AE KLRL + V+ + ++T + D + I G +F K +
Sbjct: 562 ENTVDERIIEKAEAKLRLDNIVIQQGRMSEA--QKTLGKGDMISMIRHGAEQVFAAK--D 617
Query: 526 NEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVN 563
+ SDD +++++EK ++ +++ K G+ E N
Sbjct: 618 STISDD----DIDTILEKA-EVKTAELNEKMGKIDENN 650
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 415 (151.1 bits), Expect = 1.9e-64, Sum P(2) = 1.9e-64
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 83 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 142
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 143 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 189
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 190 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 249
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 250 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 308
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 309 LLRRLKKE-VEA---QLPEKVEYVI 329
Score = 315 (115.9 bits), Expect = 1.9e-64, Sum P(2) = 1.9e-64
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 428 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 478
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 479 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 536
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 537 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 570
Score = 39 (18.8 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 535 LRLCTVNSVEEKILA 549
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 412 (150.1 bits), Expect = 2.8e-64, Sum P(2) = 2.8e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 694 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 753
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 754 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 800
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 801 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 860
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 861 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 918
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 919 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 958
Score = 324 (119.1 bits), Expect = 2.8e-64, Sum P(2) = 2.8e-64
Identities = 67/154 (43%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1039 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1089
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1090 --GSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1147
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1148 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1181
Score = 39 (18.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1146 LRLCTVNSVEEKILA 1160
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 412 (150.1 bits), Expect = 3.3e-64, Sum P(2) = 3.3e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 787 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 833
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 834 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 893
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 951
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 952 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 991
Score = 323 (118.8 bits), Expect = 3.3e-64, Sum P(2) = 3.3e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1122
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1123 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1181 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 39 (18.8 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1179 LRLCTVNSVEEKILA 1193
Score = 39 (18.8 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
E EEV +++ +R+ + + V +DV ++ K R
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKEDV-EKAKKRR 1375
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 412 (150.1 bits), Expect = 3.6e-64, Sum P(2) = 3.6e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 702 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 761
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 762 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 808
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 809 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 868
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 869 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 926
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 927 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 966
Score = 323 (118.8 bits), Expect = 3.6e-64, Sum P(2) = 3.6e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1047 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1097
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1098 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1155
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1156 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1189
Score = 39 (18.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1154 LRLCTVNSVEEKILA 1168
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 412 (150.1 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 810
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 811 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 870
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 928
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 929 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 968
Score = 323 (118.8 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1099
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1100 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1158 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
Score = 39 (18.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1156 LRLCTVNSVEEKILA 1170
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 412 (150.1 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 810
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 811 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 870
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 928
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 929 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 968
Score = 323 (118.8 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1099
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1100 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1158 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
Score = 39 (18.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1156 LRLCTVNSVEEKILA 1170
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 412 (150.1 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 764 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 810
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 811 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 870
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 871 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 928
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 929 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 968
Score = 323 (118.8 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1099
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1100 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1157
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1158 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1191
Score = 39 (18.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1156 LRLCTVNSVEEKILA 1170
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 412 (150.1 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 785 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 831
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 832 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 891
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 892 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 949
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 950 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 989
Score = 323 (118.8 bits), Expect = 3.8e-64, Sum P(2) = 3.8e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1070 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1120
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1121 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1178
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1179 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1212
Score = 39 (18.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1177 LRLCTVNSVEEKILA 1191
Score = 39 (18.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
E EEV +++ +R+ + + V +DV ++ K R
Sbjct: 1340 EEMEEEVRLKKRKRRRNVDKDPVKEDV-EKAKKRR 1373
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 412 (150.1 bits), Expect = 3.9e-64, Sum P(2) = 3.9e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 780 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 826
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 944
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 945 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 984
Score = 323 (118.8 bits), Expect = 3.9e-64, Sum P(2) = 3.9e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1065 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1115
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1116 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1173
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1174 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207
Score = 39 (18.8 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1172 LRLCTVNSVEEKILA 1186
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 412 (150.1 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 99/284 (34%), Positives = 156/284 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMGLGKT+Q I+ ++YL + GP+L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR++ + + F+VL
Sbjct: 787 VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSL-------------VPQLRSGKFNVL 833
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 834 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 893
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 951
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 952 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 991
Score = 323 (118.8 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1122
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1123 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1181 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 39 (18.8 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1179 LRLCTVNSVEEKILA 1193
Score = 39 (18.8 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
E EEV +++ +R+ + + V +DV ++ K R
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKEDV-EKAKKRR 1375
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 419 (152.6 bits), Expect = 5.1e-64, Sum P(2) = 5.1e-64
Identities = 97/266 (36%), Positives = 152/266 (57%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL-KFSQMSPGPFLV 91
V +LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL +F +++ GPFL+
Sbjct: 762 VNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEFKRLN-GPFLI 820
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS WV E K+ P + + Y G RR + + + F+V
Sbjct: 821 IVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARR-----AFLPILRSGK--------FNV 867
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
L+TTY+ ++ D+ L+++ W Y I+DE R+KN L VL H+L PRR+L+TGTP+Q
Sbjct: 868 LVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQ 927
Query: 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSA 267
N L ELWAL++F +P++F + + F F +A + + K +E+ L +L
Sbjct: 928 NKLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRP 986
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV 293
F+LRR K++ VE LP E +
Sbjct: 987 FLLRRLKKE-VEA---QLPEKVEYVI 1008
Score = 314 (115.6 bits), Expect = 5.1e-64, Sum P(2) = 5.1e-64
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R +++F+ S
Sbjct: 1107 TNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPS-------- 1158
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
+ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1159 ---HQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1215
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1216 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1249
Score = 39 (18.8 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1214 LRLCTVNSVEEKILA 1228
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 415 (151.1 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 549 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 608
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 609 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 655
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 656 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 715
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 716 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 774
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 775 LLRRLKKE-VEA---QLPEKVEYVI 795
Score = 315 (115.9 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 894 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 944
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 945 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1002
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1003 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1036
Score = 39 (18.8 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1001 LRLCTVNSVEEKILA 1015
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 197/580 (33%), Positives = 293/580 (50%)
Query: 11 AKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTL 70
A I N + + Q PV E G+ +L P Q+EG+SWL + G+ +L DEMGLGKT+
Sbjct: 244 APTIDLNKKYEDQ-PVFLKEAGL--KLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTI 300
Query: 71 QAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR- 129
Q + FL L GPFL+ PLS W E+ + P+L + YVG + R IR+
Sbjct: 301 QTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKH 360
Query: 130 -TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSV 188
+E V ++ N + F+V+LT+Y+ + +D FL I W ++DEA RL++ S
Sbjct: 361 EISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSK 420
Query: 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSA 248
+ +L + + + +LL+TGTP+QNNL EL+ L++F F L F + F D
Sbjct: 421 FFRILSK-YRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQV 479
Query: 249 PKRGKIKE--QFTSLKG-IL------SAFMLRRTKQKLVE--CGHLMLPPLTEITVLQK- 296
+ +I E LK +L S F++R + + H++ + QK
Sbjct: 480 KRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALN--QKG 537
Query: 297 --KVYASI-----LRK--ELPKLLALSSRTAN-------HQSLQNTASGXXXXXXXXXXX 340
+V + + LRK P L ++ A S ASG
Sbjct: 538 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQ 597
Query: 341 XYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERL 400
HRVLLF+QMT+ L++L+ FLE Y Y+R+DGSI+ + R Q AI+R
Sbjct: 598 LKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLR---------QKAIDRF 648
Query: 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460
++ FVF++STRAGG+G+NL ADTVI ++ DWNP D QA RAHR+GQ V+
Sbjct: 649 NDPV--SEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVM 706
Query: 461 SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-L 518
VT ++VEE IM+ A+ K+ L+H VV + T D+L I+ FG L
Sbjct: 707 IYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMT----TNFSKDELEDILRFGTEDL 762
Query: 519 F-DPK--AINNEESD--DLRLSGLNSMVEKVIAMRHEQVS 553
F D K AI+ ++ DL L N +E+ + +E +S
Sbjct: 763 FKDGKSEAIHYDDKAVADL-LDRTNRGIEEKESWANEYLS 801
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 802 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 848
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 849 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 908
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 909 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 967
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 968 LLRRLKKE-VEA---QLPEKVEYVI 988
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1087 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1137
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1138 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1195
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1196 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1229
Score = 39 (18.8 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1194 LRLCTVNSVEEKILA 1208
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 415 (151.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 658 (236.7 bits), Expect = 1.3e-63, P = 1.3e-63
Identities = 208/641 (32%), Positives = 316/641 (49%)
Query: 12 KIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQ 71
K + + R+ D +T L +Q+EGL++L + NV+L DEMGLGKT+Q
Sbjct: 200 KYVENERNREEFKQFDLTPEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQ 259
Query: 72 AISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTM 131
+I+FL+ L +SP LV+ PLS W E A + P + V+ Y G+ E R I
Sbjct: 260 SIAFLASLFEENLSP--HLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVI---- 313
Query: 132 YEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYN 191
+EH + S FDVLLTTY++V LS I W IIDE RLKN S LY+
Sbjct: 314 WEH---EFYFSEGRKSKFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYS 370
Query: 192 VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA----VHSSS 247
L + F +L+TGTP+QNNL+EL+ALMHF FG+L +F K+ +H
Sbjct: 371 SLSQ-FTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQDINKEEQISRLHQML 429
Query: 248 AP------KRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYAS 301
AP K+ +K++ K ++ + ++++ + ++ +T + ++
Sbjct: 430 APHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKA--VITNNYQVLTKKRDAKISN 487
Query: 302 ILRK-----ELPKLLA-LSSR--TANHQSLQNT-ASGXXXXXXXXXXXXYNSGHRVLLFA 352
+L K P LL R AN + ASG GHRVL++
Sbjct: 488 VLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYT 547
Query: 353 QMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVF 412
Q TL +L+D+ + ++YER+DG I ER Q I+R +E ++ F F
Sbjct: 548 QFQHTLYLLEDYFTFKNWNYERIDGKISGPER---------QVRIDRFNAE--NSNRFCF 596
Query: 413 MISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEE 472
++STRAGG+G+NL ADTVI Y+ DWNP D QA+ R HR+GQ N V+ L+ + TVEE
Sbjct: 597 LLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEE 656
Query: 473 VIMRRAERKLRLSHNVVG---------DDVVDREVKERTAVETDDL-RSIIFGLHLFDPK 522
+M + K+ L H VVG DD++ KE + E D+ RS G +D
Sbjct: 657 RMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEAGRS---GKIHYDDA 713
Query: 523 AI----NNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHES 578
AI + D + +S L+ E+ +++ +V+ E N A LEE+ + + S
Sbjct: 714 AIEQLLDRNHVDAVEVS-LDDE-EETDFLKNFKVASFEYVDDE-NEAAALEEAQAIENNS 770
Query: 579 FASATSYPDLDEASYRSWVEKFKEASE-SSSNTIAESGRRR 618
S + D S+ W + K+ E + ++ G+R+
Sbjct: 771 -----SVRNADRTSH--WKDLLKDKYEVQQAEELSALGKRK 804
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 415 (151.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 415 (151.1 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 810 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 856
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 857 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 916
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 917 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 975
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 976 LLRRLKKE-VEA---QLPEKVEYVI 996
Score = 315 (115.9 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 65/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R ++ F+
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEP--------- 1145
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G++ F+F++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1146 --GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 39 (18.8 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1202 LRLCTVNSVEEKILA 1216
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 422 (153.6 bits), Expect = 6.4e-63, Sum P(2) = 6.4e-63
Identities = 106/291 (36%), Positives = 162/291 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q+EGL+WLI Y G+N +L DEMGLGKT+Q+I+ L+++ + + GPFLV PLS
Sbjct: 222 LKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFI-YEMDTKGPFLVTAPLS 280
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W++E AKF P L VL+Y G + + + K+ +++T+Y
Sbjct: 281 TLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAK-LKNFFKQHGGTG--------IVITSY 331
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+++L D + W + I+DE RLKN + L L++ RLL+TGTP+QNNL+E
Sbjct: 332 EIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKK-INTSNRLLLTGTPLQNNLAE 390
Query: 217 LWALMHFCMPSVFGTLNQFLSTFK-DAVH---SSSAPKRGKI------KEQFTSLKGILS 266
LW+L++F MP +F F F D+++ S++ K+ K ++L IL
Sbjct: 391 LWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILK 450
Query: 267 AFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLL 311
F+LRR K K+V +LPP E +T Q+K Y + L +L K +
Sbjct: 451 PFLLRRLK-KVVLAN--ILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTM 498
Score = 289 (106.8 bits), Expect = 6.4e-63, Sum P(2) = 6.4e-63
Identities = 57/147 (38%), Positives = 92/147 (62%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GH+VL+++Q LD+++D+ +L ++ R+DGS+ E R + +E+ S
Sbjct: 617 SEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETR---------KDQLEKFNS 667
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
++ +F++STRA G+G+NLV ADTV+ ++ DWNPQVD QA+ R HRIGQ + V+
Sbjct: 668 SKDKHN--IFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVY 725
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVV 489
L ++T+E VI+ RA K L V+
Sbjct: 726 RLCCDNTIEHVILTRAANKRNLERMVI 752
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 410 (149.4 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 115/333 (34%), Positives = 183/333 (54%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQV +I H + D ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 422 VKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 481
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F + GPFL++ PLS W E +T ++ + Y
Sbjct: 482 ILADEMGLGKTIQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 539
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPL-PFDVLLTTYDVVLMDQGFLSQIPWCYTIID 177
G + R+ I++ YE V +Q + +S + F V++TT++++L D L +I W IID
Sbjct: 540 GSQISRQMIQQ--YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIID 597
Query: 178 EAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLS 237
EA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F PS F + FL
Sbjct: 598 EAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE 656
Query: 238 TFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITV 293
F D K +EQ L+ IL MLRR K + + +L T E+T
Sbjct: 657 EFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVELTN 704
Query: 294 LQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+QKK Y +IL K L+ + N +L NT
Sbjct: 705 IQKKYYRAILEKNF-SFLSKGANQHNMPNLINT 736
Score = 316 (116.3 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 798 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 847
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 848 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 906
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 907 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGSTNGVQQLSKMEVEDL 954
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 409 (149.0 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 115/333 (34%), Positives = 182/333 (54%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQV +I H + D ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 423 VKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 482
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F + GPFL++ PLS W E +T ++ + Y
Sbjct: 483 ILADEMGLGKTIQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 540
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPL-PFDVLLTTYDVVLMDQGFLSQIPWCYTIID 177
G + R+ I++ YE V +Q + +S + F V++TT++++L D L +I W IID
Sbjct: 541 GSQISRQMIQQ--YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIID 598
Query: 178 EAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLS 237
EA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F PS F + FL
Sbjct: 599 EAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE 657
Query: 238 TFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITV 293
F D K +EQ L+ IL MLRR K + + +L T E+T
Sbjct: 658 EFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVELTN 705
Query: 294 LQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+QKK Y +IL K L + N +L NT
Sbjct: 706 IQKKYYRAILEKNF-SFLTKGANQHNMPNLINT 737
Score = 316 (116.3 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 799 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 848
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 849 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 907
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 908 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGSTNGVQQLSKMEVEDL 955
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 409 (149.0 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 115/333 (34%), Positives = 182/333 (54%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQV +I H + D ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 423 VKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 482
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F + GPFL++ PLS W E +T ++ + Y
Sbjct: 483 ILADEMGLGKTIQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 540
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPL-PFDVLLTTYDVVLMDQGFLSQIPWCYTIID 177
G + R+ I++ YE V +Q + +S + F V++TT++++L D L +I W IID
Sbjct: 541 GSQISRQMIQQ--YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIID 598
Query: 178 EAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLS 237
EA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F PS F + FL
Sbjct: 599 EAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE 657
Query: 238 TFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITV 293
F D K +EQ L+ IL MLRR K + + +L T E+T
Sbjct: 658 EFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVELTN 705
Query: 294 LQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+QKK Y +IL K L + N +L NT
Sbjct: 706 IQKKYYRAILEKNF-SFLTKGANQHNMPNLINT 737
Score = 316 (116.3 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 799 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 848
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 849 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 907
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 908 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGSTNGVQQLSKMEVEDL 955
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 409 (149.0 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 115/333 (34%), Positives = 182/333 (54%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQV +I H + D ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 423 VKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 482
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F + GPFL++ PLS W E +T ++ + Y
Sbjct: 483 ILADEMGLGKTIQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 540
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPL-PFDVLLTTYDVVLMDQGFLSQIPWCYTIID 177
G + R+ I++ YE V +Q + +S + F V++TT++++L D L +I W IID
Sbjct: 541 GSQISRQMIQQ--YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIID 598
Query: 178 EAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLS 237
EA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F PS F + FL
Sbjct: 599 EAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE 657
Query: 238 TFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITV 293
F D K +EQ L+ IL MLRR K + + +L T E+T
Sbjct: 658 EFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVELTN 705
Query: 294 LQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+QKK Y +IL K L + N +L NT
Sbjct: 706 IQKKYYRAILEKNF-SFLTKGANQHNMPNLINT 737
Score = 316 (116.3 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 799 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 848
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 849 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 907
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 908 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEVEDL 955
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 397 (144.8 bits), Expect = 2.5e-62, Sum P(2) = 2.5e-62
Identities = 97/284 (34%), Positives = 153/284 (53%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ LK +Q++GL W++ Y +N +L DEMG GKT+Q I+ ++YL + GP+L++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLNGPYLII 786
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + Y G RR++ + + F+ L
Sbjct: 787 VPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSL-------------VPQLRSGKFNAL 833
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRR+L+TGTP+QN
Sbjct: 834 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 893
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT-----SLKGILSA 267
L ELWAL++F +P++F + + F F +A + + +R + E+ T L +L
Sbjct: 894 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTG-ERVDLNEEETILIIRRLHKVLRP 951
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRK 305
F+LRR K++ VE LP E + LQK +Y + K
Sbjct: 952 FLLRRLKKE-VES---QLPEKVEYVIKCDMSALQKILYRHMQAK 991
Score = 323 (118.8 bits), Expect = 2.5e-62, Sum P(2) = 2.5e-62
Identities = 66/154 (42%), Positives = 97/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ HRVLLF QMT + I++D+ R + Y RLDG+ ++E+R A ++ F+
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEP--------- 1122
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G+ F+F++STRAGG+GLNL AADTV+ ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1123 --GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1180
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1181 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1214
Score = 39 (18.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1179 LRLCTVNSVEEKILA 1193
Score = 39 (18.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
E EEV +++ +R+ + + V +DV ++ K R
Sbjct: 1342 EEMEEEVRLKKRKRRRNVDKDPVKEDV-EKAKKRR 1375
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 398 (145.2 bits), Expect = 4.9e-62, Sum P(2) = 4.9e-62
Identities = 114/336 (33%), Positives = 181/336 (53%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQ+ +I H + + ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 345 IKEFEALQIPPEIKHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 404
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F GPFL++ PLS W E +T ++ + Y
Sbjct: 405 ILADEMGLGKTIQSITFLSEI-FLMGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 462
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLP----FDVLLTTYDVVLMDQGFLSQIPWCYT 174
G + R+ I++ YE V +Q N PLP F V++TT++++L D L +I W
Sbjct: 463 GSQISRQMIQQ--YEMVYRDTQ-GN--PLPGIFKFQVVITTFEMILADCPELKKIQWRCV 517
Query: 175 IIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQ 234
+IDEA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F P F +
Sbjct: 518 VIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETA 576
Query: 235 FLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----E 290
FL F D K +EQ L+ IL MLRR K + + +L T E
Sbjct: 577 FLEEFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVE 624
Query: 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+T +QKK Y +IL K L+ + N +L NT
Sbjct: 625 LTNIQKKYYRAILEKNF-SFLSKGANQHNMPNLINT 659
Score = 316 (116.3 bits), Expect = 4.9e-62, Sum P(2) = 4.9e-62
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 721 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 770
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 771 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 829
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 830 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEVEDL 877
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 422 (153.6 bits), Expect = 7.6e-62, Sum P(4) = 7.6e-62
Identities = 95/245 (38%), Positives = 148/245 (60%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPG-PFLVLCP 94
+LK +QV GL WLI Y +N +L DEMGLGKT+Q I+F+S+L + +M+ PFLV+ P
Sbjct: 623 KLKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFL-YERMNVREPFLVVAP 681
Query: 95 LSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLT 154
LS WVSE A+++PKL V+ Y G++++RR RT+ + F V++T
Sbjct: 682 LSTISNWVSEFARWSPKLHVIVYKGKQDERRETARTIPRNA-------------FCVVIT 728
Query: 155 TYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNL 214
+++ ++ D+ L ++ W Y IIDE R+KN +S L LR++ RLL+TGTP+QN+L
Sbjct: 729 SFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSR-NRLLLTGTPLQNDL 787
Query: 215 SELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-----FTSLKGILSAFM 269
ELWAL++F +P++F + + F + F +A + + E+ L +L F+
Sbjct: 788 GELWALLNFLLPTIFNSADTFQNWF-NAPFQAKGKNLINVNEEESLIIINRLHQVLRFFL 846
Query: 270 LRRTK 274
LRR K
Sbjct: 847 LRRLK 851
Score = 295 (108.9 bits), Expect = 7.6e-62, Sum P(4) = 7.6e-62
Identities = 83/261 (31%), Positives = 138/261 (52%)
Query: 236 LSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE---IT 292
L K V S K+ K+ +K +SA + + LVE G L + P ++
Sbjct: 847 LRRLKSDVESQLPDKKEKV------IKCNMSALQIAMYRS-LVEYGVLPIDPDSKEGRSG 899
Query: 293 VLQKKVYASILRKELPKLL----ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
L+ K + +I+ K+L K+ ++ L T SG + S HRV
Sbjct: 900 RLKMKGFNNIV-KQLQKICNHPYLFKDEWDINEDLIRT-SGKFDTMDQILTKMHASKHRV 957
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F QMT+ +++++++ L+++++ RLDGS + EER H V+ ++ +
Sbjct: 958 LIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEER----AHLVVE------WNRPD-SP 1006
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
++F++ST AGG+G+NL ADTVI ++ DWNPQ+D QA R HRIGQ N V L++ +
Sbjct: 1007 FWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISAN 1066
Query: 469 TVEEVIMRRAERKLRLSHNVV 489
++EE I+ RA KL + ++
Sbjct: 1067 SIEEKILGRATDKLEIDAKII 1087
Score = 39 (18.8 bits), Expect = 7.6e-62, Sum P(4) = 7.6e-62
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 554 GKAGRKFEVNPVALLEESD 572
GK GRK ++ P EE D
Sbjct: 1511 GKRGRKKKIRPNPEDEEKD 1529
Score = 37 (18.1 bits), Expect = 7.6e-62, Sum P(4) = 7.6e-62
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 2 KYKERLQVAA---KIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLS 46
K+ E + + A K+ H N+E+ + V A E + ++E LS
Sbjct: 440 KFLEAIAIHARDFKVFHSNNEKFLRQNVIKAIHRYHKEKEKREIERLS 487
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 405 (147.6 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 106/296 (35%), Positives = 163/296 (55%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q+EG++WL+ + N +L DEMGLGKT+Q+I+FL + ++ GPFLV+ PL
Sbjct: 754 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEV-YNVGIRGPFLVIAPL 812
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE-HVKEQSQMSNVSPLPFDVLLT 154
S W E +T ++ + Y G R+ I++ YE + K+ FD L+T
Sbjct: 813 STITNWEREFGSWT-QMNTIVYHGSLASRQMIQQ--YEMYCKDSKGRLIPGAYKFDALIT 869
Query: 155 TYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNL 214
T+++VL D L +I W IIDEA RLKN + L + L+ H + ++L+TGTP+QN +
Sbjct: 870 TFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-HMDLEHKVLLTGTPLQNTV 928
Query: 215 SELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTK 274
EL++L+HF P+ F + +FL F D K +EQ L+ IL MLRR K
Sbjct: 929 EELFSLLHFLEPTQFSSEAEFLKDFGDL----------KTEEQVQKLQAILKPMMLRRLK 978
Query: 275 QKLVECGHLMLPPLT----EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+ + + +L T E+T +QKK Y +IL K L + +N +L NT
Sbjct: 979 EDVEK--NLAPKQETIIEVELTNIQKKYYRAILEKNF-SFLTKGASQSNTPNLLNT 1031
Score = 313 (115.2 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 73/170 (42%), Positives = 101/170 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y YER+DG +R R AAI FS +
Sbjct: 1093 GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDS-------- 1144
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 1145 ---DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRL 1201
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV----G-DDVVDREVKERTAVETDDL 509
+T ++ E + +A KL L V+ G D+ + +++ T E +DL
Sbjct: 1202 ITRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDL 1251
Score = 39 (18.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 25/125 (20%), Positives = 44/125 (35%)
Query: 246 SSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPP-LTEITVLQKKVYASILR 304
+ P + ++E F SL L + L + G L + ++ + K + L+
Sbjct: 920 TGTPLQNTVEELF-SLLHFLEPTQFSSEAEFLKDFGDLKTEEQVQKLQAILKPMMLRRLK 978
Query: 305 KELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDF 364
+++ K LA T L N G A + T ++L
Sbjct: 979 EDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKG------ASQSNTPNLLNTM 1032
Query: 365 LELRK 369
+ELRK
Sbjct: 1033 MELRK 1037
Score = 38 (18.4 bits), Expect = 6.3e-33, Sum P(2) = 6.3e-33
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQAL 447
L E GN A + A + + D V + W+ + DK L
Sbjct: 1531 LRQEVIGNQAMKVLSGVEARQIDIWFPQVDQVEVPSRWWDREADKSLL 1578
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 421 (153.3 bits), Expect = 1.2e-61, Sum P(3) = 1.2e-61
Identities = 108/304 (35%), Positives = 162/304 (53%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V +L+ +Q+ GL WL+ Y +N +L DEMGLGKT+Q IS + YL ++ GPFLV+
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P SV GW SE+ + P + + Y G ++RR + + H K F+VL
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQK------------FNVL 857
Query: 153 LTTYDVVLM--DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
LTTY+ ++ D+ LS+I W Y IIDE R+KN S L N +H++ RLL+TGTP+
Sbjct: 858 LTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKL-NADLKHYVSSHRLLLTGTPL 916
Query: 211 QNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS--SAPKRGKIKEQ-----FTSLKG 263
QNNL ELWAL++F +P++F + F F S+ S+ + + E+ L
Sbjct: 917 QNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQ 976
Query: 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITV-LQKKVYASILRKELPKLLALSSRTANHQS 322
+L F+LRR K K+ LP E + + Y +L K + L S A ++
Sbjct: 977 VLRPFVLRRLKHKVEN----ELPEKIERLIRCEASAYQKLLMKRVEDNLG-SIGNAKSRA 1031
Query: 323 LQNT 326
+ N+
Sbjct: 1032 VHNS 1035
Score = 306 (112.8 bits), Expect = 1.2e-61, Sum P(3) = 1.2e-61
Identities = 66/144 (45%), Positives = 90/144 (62%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL F+ MT+ LD+++D+L L+ Y Y RLDG +R A I F+
Sbjct: 1090 HRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFN-----------KS 1138
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G+ F+F++S RAGGVG+NL AADTVI ++ DWNPQVD QA RAHRIGQ VL +
Sbjct: 1139 GSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFE 1198
Query: 466 TEHTVEEVIMRRAERKLRLSHNVV 489
T ++VEE + AE KL +++ +
Sbjct: 1199 TVNSVEEQVRASAEHKLGVANQSI 1222
Score = 39 (18.8 bits), Expect = 1.2e-61, Sum P(3) = 1.2e-61
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 478 AERKLRLSHNVVGDDVVDREVKERTAVET 506
AE +L + VV++ +K++ VET
Sbjct: 3282 AESQLADTEPFTSPTVVEKNIKDQEQVET 3310
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 415 (151.1 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 97/265 (36%), Positives = 145/265 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
V LK +Q++GL WL+ Y +N +L DEMGLGKT+Q I+ ++YL + GPFL++
Sbjct: 742 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
PLS W E K+ P + + Y G RR + + F+VL
Sbjct: 802 VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF-------------VPQLRSGKFNVL 848
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
LTTY+ ++ D+ L++I W Y I+DE R+KN L VL H++ PRRLL+TGTP+QN
Sbjct: 849 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQN 908
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSAF 268
L ELWAL++F +P++F + + F F +A + + K +E+ L +L F
Sbjct: 909 KLPELWALLNFLLPTIFKSCSTFEQWF-NAPFAMTGEKVDLNEEETILIIRRLHKVLRPF 967
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV 293
+LRR K++ VE LP E +
Sbjct: 968 LLRRLKKE-VEA---QLPEKVEYVI 988
Score = 294 (108.6 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 64/154 (41%), Positives = 96/154 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+ H+VLLF QMT + I++D+ R + Y RLDG+ +AE+R + ++E
Sbjct: 1087 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLT-----------FNE 1135
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G ++ F+ ++STRAGG+GLNL +ADTVI ++ DWNP D QA RAHRIGQ N V +
Sbjct: 1136 PG-SEYFI-LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1193
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE 497
L T ++VEE I+ A+ KL + V+ + D++
Sbjct: 1194 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1227
Score = 39 (18.8 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 532 LRLSGLNSMVEKVIA 546
LRL +NS+ EK++A
Sbjct: 1192 LRLCTVNSVEEKILA 1206
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 398 (145.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 114/336 (33%), Positives = 181/336 (53%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQ+ +I H + + ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 220 IKEFEALQIPPEIKHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 279
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F GPFL++ PLS W E +T ++ + Y
Sbjct: 280 ILADEMGLGKTIQSITFLSEI-FLMGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 337
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLP----FDVLLTTYDVVLMDQGFLSQIPWCYT 174
G + R+ I++ YE V +Q N PLP F V++TT++++L D L +I W
Sbjct: 338 GSQISRQMIQQ--YEMVYRDTQ-GN--PLPGIFKFQVVITTFEMILADCPELKKIQWRCV 392
Query: 175 IIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQ 234
+IDEA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F P F +
Sbjct: 393 VIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETA 451
Query: 235 FLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----E 290
FL F D K +EQ L+ IL MLRR K + + +L T E
Sbjct: 452 FLEEFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVE 499
Query: 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+T +QKK Y +IL K L+ + N +L NT
Sbjct: 500 LTNIQKKYYRAILEKNF-SFLSKGANQHNMPNLINT 534
Score = 316 (116.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 596 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 645
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 646 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 704
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 705 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEVEDL 752
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 398 (145.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 114/336 (33%), Positives = 181/336 (53%)
Query: 1 MKYKERLQVAAKIIH-DNDERDGQTPVDAA-EFGVTAELKPHQVEGLSWLIRRYLLGVNV 58
+K E LQ+ +I H + + ++ + E+ + +L+ +Q+EG++WL+ + N
Sbjct: 220 IKEFEALQIPPEIKHMERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNC 279
Query: 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
+L DEMGLGKT+Q+I+FLS + F GPFL++ PLS W E +T ++ + Y
Sbjct: 280 ILADEMGLGKTIQSITFLSEI-FLMGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYH 337
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLP----FDVLLTTYDVVLMDQGFLSQIPWCYT 174
G + R+ I++ YE V +Q N PLP F V++TT++++L D L +I W
Sbjct: 338 GSQISRQMIQQ--YEMVYRDTQ-GN--PLPGIFKFQVVITTFEMILADCPELKKIQWRCV 392
Query: 175 IIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQ 234
+IDEA RLKN + L L+ + ++L+TGTP+QN++ EL++L++F P F +
Sbjct: 393 VIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETA 451
Query: 235 FLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT----E 290
FL F D K +EQ L+ IL MLRR K + + +L T E
Sbjct: 452 FLEEFGDL----------KTEEQVKKLQSILKPMMLRRLKDDVEK--NLAPKQETIIEVE 499
Query: 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+T +QKK Y +IL K L+ + N +L NT
Sbjct: 500 LTNIQKKYYRAILEKNF-SFLSKGANQHNMPNLINT 534
Score = 316 (116.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 72/170 (42%), Positives = 105/170 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y+YER+DG +R R Q+AI+R
Sbjct: 596 GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLR---------QAAIDRFCKP- 645
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
+D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 646 -DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 704
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE-----VKERTAVETDDL 509
+T ++ E + +A KL L V+ D ++R+ V++ + +E +DL
Sbjct: 705 ITRNSYEREMFDKASLKLGLDKAVLQD--INRKGGTNGVQQLSKMEVEDL 752
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 379 (138.5 bits), Expect = 8.7e-61, Sum P(2) = 8.7e-61
Identities = 91/243 (37%), Positives = 133/243 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q GL WL+ Y +N +L DEMGLGKT+Q IS L++L + + GP L++ P
Sbjct: 627 QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPT 686
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
SV W E+ ++ P ++L Y G +++R+ +K Q P F V +T+
Sbjct: 687 SVMLNWEMELKRWCPSFKILTYYGAQKERK---------LKRQGW---TKPNAFHVCITS 734
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +VL D + W Y I+DEAQ +KN S + L +F RRLL+TGTP+QN+L
Sbjct: 735 YKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLL-NFNSQRRLLLTGTPLQNSLM 793
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDA----VHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
ELW+LMHF MP VF + +F F + + S G +K L +L F+LR
Sbjct: 794 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKR----LHKVLRPFLLR 849
Query: 272 RTK 274
R K
Sbjct: 850 RVK 852
Score = 336 (123.3 bits), Expect = 8.7e-61, Sum P(2) = 8.7e-61
Identities = 83/231 (35%), Positives = 126/231 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F QMT+ LD+L+ FL + Y RLDGS R E+R A + F+ I
Sbjct: 2047 GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI------- 2099
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F F++STR+GGVG+NL ADTV+FY+ DWNP +D QA R HRIGQ V L
Sbjct: 2100 -----FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 2154
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV-GDDVVDREVKERTAVETDDLRSIIFGLHLFDP-- 521
++E TVEE I+++A +K L + G + K++T E +F + L +P
Sbjct: 2155 ISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE-------LFDMPLEEPPG 2207
Query: 522 KAINN--EESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEE 570
++++ EE ++ S ++E+ + ++ +A + + VA L E
Sbjct: 2208 SSVSSVPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAE 2258
Score = 37 (18.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 17/71 (23%), Positives = 25/71 (35%)
Query: 224 CMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHL 283
C P V + S F + SSAP + + S L+ + + G
Sbjct: 1547 CSP-VLVPASALTSPFP--ISPSSAPAQASLLAPAPSTSQALATSLAPMAASQTTILGPS 1603
Query: 284 MLPPLTEITVL 294
PPL + VL
Sbjct: 1604 PTPPLAPLPVL 1614
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 389 (142.0 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 98/292 (33%), Positives = 159/292 (54%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+P+Q+EGL+WL + N +L DEMGLGKT+Q+++F+ + + GPFLV+ PLS
Sbjct: 2029 LRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSV-YEYGIRGPFLVIAPLS 2087
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W E +T + V+ Y G ++ I+ Y + E ++ P+ F+VL+TT+
Sbjct: 2088 TIPNWQREFEGWTD-MNVVVYHGSVTSKQMIQDYEYYYKTESGKVLK-EPIKFNVLITTF 2145
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++++ D L W +IDEA RLKN + L LR+ + R+L++GTP+QNN+SE
Sbjct: 2146 EMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQ-LNLEHRVLLSGTPLQNNISE 2204
Query: 217 LWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQK 276
L++L++F PS F + +F+S F + +E+ L+ +L MLRR K
Sbjct: 2205 LFSLLNFLEPSQFSSQEEFMSEFGSL----------RTEEEVNKLQALLKPMMLRRLKDD 2254
Query: 277 LVECGHLMLPPLTEI--TVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
+ + + E+ T +QKK Y IL + L + +AN +L NT
Sbjct: 2255 VEKSLAPKEETIIEVELTNIQKKYYRGILEQNF-SFLKKGTTSANIPNLMNT 2305
Score = 330 (121.2 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 90/217 (41%), Positives = 122/217 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F+QM + LDIL+D+L RKY +ER+DG IR R Q AI+R YS+
Sbjct: 2365 NGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLR---------QEAIDR-YSK 2414
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G +D FVF++ T+AGG+G+NL AADTVI Y+ DWNPQ D QA R HRIGQ V
Sbjct: 2415 PG-SDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYR 2473
Query: 464 LVTEHTVEEVIMRRAERKLRL------SHNVVGDDVVDREVKERTAVETDDL-RSIIFGL 516
L+ +T E + +A KL L S N G D K+ + E +DL + +G
Sbjct: 2474 LLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSK--DGNNKQLSKKEIEDLLKKGAYGA 2531
Query: 517 HLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVS 553
+ D A + +D+ S L + VI M E+ S
Sbjct: 2532 VMDDDNAGDKFCEEDID-SILKRRTQ-VITMESEKGS 2566
Score = 50 (22.7 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 22/99 (22%), Positives = 43/99 (43%)
Query: 524 INNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASAT 583
I +EES + + N + A ++ GK E L+ES L + ++ T
Sbjct: 3692 IKSEESPEKHDTADNLEDKNSDAEESTKIKGKEDFNPETTEKEALDESTNLNKDKSSTET 3751
Query: 584 SYPDLDEASYRSWVEKFKEASESSSNTIAESGRRR-SPE 621
P+++++ + ++ E +AE+G + SPE
Sbjct: 3752 LVPEIEDS------KPSEDKMEVEELPVAENGEKEGSPE 3784
Score = 46 (21.3 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVL 160
E+L+ G+R IRR + ++ + N+ PF+ T D VL
Sbjct: 1901 ELLK--GDRRVAAKIRRFQQKQSQQLNIFENIEDEPFNQDFTEVDRVL 1946
Score = 40 (19.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 520 DPKAINNEESDDLRLS 535
DP A +E++DL LS
Sbjct: 2600 DPDACERDETEDLVLS 2615
Score = 37 (18.1 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 274 KQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325
+Q L HL+ P + Q++ S +++ P+ + + +HQ +Q+
Sbjct: 683 QQNLPNMHHLIQPTMETTQPTQQQQQTS-QQQQQPQQPQATLTSPHHQQMQH 733
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 374 (136.7 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 90/240 (37%), Positives = 132/240 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q GL WL+ Y +N +L DEMGLGKT+ I+ L++L + GP L++ P S
Sbjct: 536 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTS 595
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W +E K+ P ++L Y G ++R+ +K Q M S F V +TTY
Sbjct: 596 VMLNWETEFLKWCPAFKILTYFGSAKERK---------LKRQGWMKLNS---FHVCITTY 643
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+V+ D + W Y I+DEA +KN S + L +F RR+L+TGTP+QN+L E
Sbjct: 644 RLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLL-NFNSKRRILLTGTPLQNDLME 702
Query: 217 LWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI-KEQFTSLKGILSAFMLRRTKQ 275
LW+LMHF MP VF + +F F + + + + KI KE L +L F+LRR K+
Sbjct: 703 LWSLMHFLMPHVFQSHQEFKDWFCNPI-AGMVEGQEKINKEVIDRLHNVLRPFLLRRLKR 761
Score = 336 (123.3 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 82/217 (37%), Positives = 123/217 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHR L+F QMT+ LD+L+ F+ L Y+Y RLDGS EER ++ F+ I
Sbjct: 1091 GHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKI------- 1143
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+F++STR+GGVG+NLV ADTVIFY+ DWNP +D+QA R HRIGQ V L
Sbjct: 1144 -----FLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1198
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
++E T+EE I+++A +K L + V+ + + E ++ ++ +L S L D K
Sbjct: 1199 ISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKK--LDPMELFSGHKALTTKDEKET 1256
Query: 525 NNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFE 561
+ D+ LS N+ VE + ++ A ++ E
Sbjct: 1257 SKHCGADIPLS--NADVEAALKQAEDEADYMALKRVE 1291
Score = 48 (22.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 133 EHVKEQSQMSNVSPLPFDVLLTTY 156
+HV+E + + S +P +VLL Y
Sbjct: 402 DHVEEIALLQKESEMPIEVLLARY 425
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 399 (145.5 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 110/311 (35%), Positives = 166/311 (53%)
Query: 21 DGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80
D + + E+ +L+ +Q+EG++WL+ + N +L DEMGLGKT+Q+I+FL Y
Sbjct: 941 DWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEI 999
Query: 81 FSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE-HVKEQS 139
+ + GPFLV+ PLS W E +T +L V+ Y G + RR I+ +YE + K+
Sbjct: 1000 YLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQ--LYEMYFKDPQ 1056
Query: 140 QMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
F ++TT++++L D L IPW +IDEA RLKN + L L+ L
Sbjct: 1057 GRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDL- 1115
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259
++L+TGTP+QN + EL++L+HF PS F + F+ F D K +EQ
Sbjct: 1116 EHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDL----------KTEEQVQ 1165
Query: 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITVLQKKVYASILRKELPKLLALSS 315
L+ IL MLRR K+ + + +L T E+T +QKK Y +IL K L+
Sbjct: 1166 KLQAILKPMMLRRLKEDVEK--NLAPKEETIIEVELTNIQKKYYRAILEKNFT-FLSKGG 1222
Query: 316 RTANHQSLQNT 326
AN +L NT
Sbjct: 1223 GQANVPNLLNT 1233
Score = 317 (116.6 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 73/169 (43%), Positives = 99/169 (58%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QM + LDIL+D+L R+Y YER+DG +R R AAI FS +
Sbjct: 1295 GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDS-------- 1346
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 1347 ---DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRL 1403
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV----GDDVVDREVKERTAVETDDL 509
+T ++ E + +A KL L V+ G + V++ + E +DL
Sbjct: 1404 ITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1452
Score = 42 (19.8 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 550 EQVSGKAGRKFEVNPVALLEESDLLMHESFASATSYP----DLDEASYRSWVEKFKEASE 605
EQ GKA + E +P E SD E A + + +S + ++ + + +
Sbjct: 2158 EQAEGKA-EECEHSPAK--ERSDGKEEEEEAGGAKDSRQECEAEASSVKGELKGVEGSGD 2214
Query: 606 SSSNTIAESGRRRSPEDK 623
S +++E G E+K
Sbjct: 2215 PGSKSVSEKGSEEDEEEK 2232
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 379 (138.5 bits), Expect = 3.0e-60, Sum P(2) = 3.0e-60
Identities = 91/243 (37%), Positives = 133/243 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q GL WL+ Y +N +L DEMGLGKT+Q IS L++L + + GP L++ P
Sbjct: 625 QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPT 684
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
SV W E+ ++ P ++L Y G +++R+ +K Q P F V +T+
Sbjct: 685 SVMLNWEMELKRWCPSFKILTYYGAQKERK---------LKRQGW---TKPNAFHVCITS 732
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +VL D + W Y I+DEAQ +KN S + L +F RRLL+TGTP+QN+L
Sbjct: 733 YKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLL-NFNSQRRLLLTGTPLQNSLM 791
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDA----VHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
ELW+LMHF MP VF + +F F + + S G +K L +L F+LR
Sbjct: 792 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKR----LHKVLRPFLLR 847
Query: 272 RTK 274
R K
Sbjct: 848 RVK 850
Score = 331 (121.6 bits), Expect = 3.0e-60, Sum P(2) = 3.0e-60
Identities = 84/228 (36%), Positives = 123/228 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F QMT+ LD+L+ FL + Y RLDGS R E+R A + F+ I
Sbjct: 2070 GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI------- 2122
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F F++STR+GGVG+NL ADTV+FY+ DWNP +D QA R HRIGQ V L
Sbjct: 2123 -----FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 2177
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV-GDDVVDREVKERTAVETDDLR-SIIFGLHLFDPK 522
++E TVEE I+++A +K L + G + K++T E D+ G + P
Sbjct: 2178 ISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSGSSV--PS 2235
Query: 523 AINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEE 570
A ++EE + S ++E+ + ++ +A + + VA L E
Sbjct: 2236 APDDEE--ETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAE 2281
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 374 (136.7 bits), Expect = 3.5e-60, Sum P(2) = 3.5e-60
Identities = 99/281 (35%), Positives = 147/281 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q EG+ WL+ Y N +L DEMGLGKT+Q I+FLS + + GPFLV+ PLS
Sbjct: 1197 LREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRI-YDYGIHGPFLVVVPLS 1255
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR--TMYE--HVKEQSQMSNVSPLPFDVL 152
WV E +T + + Y G R +++ Y+ H ++ N + D L
Sbjct: 1256 TIQNWVREFETWTD-MNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNF--VKIDAL 1312
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS-SVLYNVLREHFLMPRRLLMTGTPIQ 211
+TT++ V+ D FL +IPW +IDEA RLKN + +L N L F M R+L+TGTP+Q
Sbjct: 1313 ITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLA-FRMEHRVLLTGTPLQ 1371
Query: 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
NN+ EL++L++F P F FL F + +Q L+ IL MLR
Sbjct: 1372 NNIDELFSLLNFLHPQQFDNSATFLEQFGSC----------QTDDQVQKLQEILKPMMLR 1421
Query: 272 RTKQKLVECGHLMLPPLTEITV--LQKKVYASILRKELPKL 310
R K+ + + + E+ + +QKK Y +IL + L
Sbjct: 1422 RLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFSHL 1462
Score = 335 (123.0 bits), Expect = 3.5e-60, Sum P(2) = 3.5e-60
Identities = 95/296 (32%), Positives = 150/296 (50%)
Query: 317 TANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLD 376
T H++L ASG GH+VL+F+QM + LD+L++FL Y +ER+D
Sbjct: 1510 TLAHKALIQ-ASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERID 1568
Query: 377 GSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQ 436
G++R + R AAI FS +++ D FVF++ TRAGG+G+NL AADTVI ++
Sbjct: 1569 GNVRGDLRQAAIDRFSKENS-----------DRFVFLLCTRAGGLGINLTAADTVIIFDS 1617
Query: 437 DWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
DWNPQ D QA R HRIGQ V L+T +T E + +A KL L V+ +
Sbjct: 1618 DWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALK 1677
Query: 497 EVKERTAVETDDLRSIIF-GLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGK 555
E TA+ D+ ++ G + +I +EE++ + + +E ++ R + ++ +
Sbjct: 1678 A--EGTALSKKDVEELLKKGAY----GSIMDEENESSKFN--EEDIETILQRRTQTITLE 1729
Query: 556 AGRKFEVNPVALLEESDLLMHESFASATSYPDLDEASY-RSWVEKFKEASESSSNT 610
AG+K + A S H D+D+ + W EK + E ++ T
Sbjct: 1730 AGQKGSLFAKATFNSS----HNKGDDI----DIDDPEFWTKWAEKAQVDVEKATAT 1777
Score = 40 (19.1 bits), Expect = 8.7e-25, Sum P(2) = 8.7e-25
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 127 IRRTMYEHV-KEQSQMSNVSPLPFDV 151
+ + YE++ KE+ Q+S V P P +V
Sbjct: 747 VEQNDYENIEKEEPQVS-VDPEPVEV 771
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 617 (222.3 bits), Expect = 6.1e-60, P = 6.1e-60
Identities = 160/448 (35%), Positives = 238/448 (53%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 478 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 537
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + ++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 538 STLTSWQREIQTWASQMNAVVYLGDINSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 590
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 591 YEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 649
Query: 216 ELWALMHFCMPSVFGTLNQF------------------LSTF------KDAVHSSSAPKR 251
ELW+L+HF MP F + F L F KD S A
Sbjct: 650 ELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVE 709
Query: 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLL 311
++ + ++L+ ++L R + L + I + KK + P
Sbjct: 710 QILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNN 769
Query: 312 ALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYS 371
++ Q L + SG G+RVL+F+QM + LDIL ++L+ R++
Sbjct: 770 EFYNKQEALQHLIRS-SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 828
Query: 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431
++RLDGSI E R A+ HF+ A G++ F F++STRAGG+G+NL +ADTV
Sbjct: 829 FQRLDGSI-GELRRQALDHFN-----------AXGSEDFCFLLSTRAGGLGINLASADTV 876
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHV 459
+ ++ DWNPQ D QA RAHRIGQ V
Sbjct: 877 VIFDSDWNPQNDLQAQARAHRIGQKKQV 904
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 379 (138.5 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 91/243 (37%), Positives = 133/243 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q GL WL+ Y +N +L DEMGLGKT+Q IS L++L + + GP L++ P
Sbjct: 617 QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPT 676
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
SV W E+ ++ P ++L Y G +++R+ +K Q P F V +T+
Sbjct: 677 SVMLNWEMELKRWCPSFKILTYYGAQKERK---------LKRQGW---TKPNAFHVCITS 724
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +VL D + W Y I+DEAQ +KN S + L +F RRLL+TGTP+QN+L
Sbjct: 725 YKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLL-NFNSQRRLLLTGTPLQNSLM 783
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDA----VHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
ELW+LMHF MP VF + +F F + + S G +K L +L F+LR
Sbjct: 784 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKR----LHKVLRPFLLR 839
Query: 272 RTK 274
R K
Sbjct: 840 RVK 842
Score = 335 (123.0 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 83/231 (35%), Positives = 124/231 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F QMT+ LD+L+ FL + Y RLDGS R E+R A + F+ I
Sbjct: 2059 GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI------- 2111
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F F++STR+GGVG+NL ADTV+FY+ DWNP +D QA R HRIGQ V L
Sbjct: 2112 -----FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 2166
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV-GDDVVDREVKERTAVETDDLRSIIFGLHLFDPKA 523
++E TVEE I+++A +K L + G + K++T E +F + L +P +
Sbjct: 2167 ISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE-------LFDMPLEEPSS 2219
Query: 524 IN----NEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEE 570
+ EE ++ S ++E+ + ++ +A + + VA L E
Sbjct: 2220 SSVPSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAE 2270
Score = 42 (19.8 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 15 HDNDERDGQTPVDAAE 30
HD+D RDG P + AE
Sbjct: 357 HDSDTRDG--PEEGAE 370
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 415 (151.1 bits), Expect = 9.8e-60, Sum P(2) = 9.8e-60
Identities = 86/203 (42%), Positives = 124/203 (61%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL+WLI Y GVN +L DEMGLGKTLQ I+ L YLK + PGP +VL P S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W++E ++ P L V+ +VG+++ R R + P +DV +T+Y
Sbjct: 243 TLYNWMNEFKRWVPSLRVICFVGDKDARAAFIR------------DEMMPGEWDVCVTSY 290
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGTP+QNNL E
Sbjct: 291 EMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHE 349
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LWAL++F +P VF + + F S F
Sbjct: 350 LWALLNFLLPDVFNSADDFDSWF 372
Score = 272 (100.8 bits), Expect = 9.8e-60, Sum P(2) = 9.8e-60
Identities = 78/216 (36%), Positives = 116/216 (53%)
Query: 394 QSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI 453
+ AIE A + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRI
Sbjct: 559 KEAIEAF--NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 616
Query: 454 GQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSI 512
GQ V L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I
Sbjct: 617 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMI 674
Query: 513 IFGL-HLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEES 571
G H+F K +E +D+ ++ L EK A +E++ K G + + E
Sbjct: 675 RHGATHVFASK--ESELTDE-DITTLLERGEKKTAEMNERLQ-KMGES-SLRNFRMDTEQ 729
Query: 572 DLLMHESFASATSYPDLDEASYRSWVEKFKEASESS 607
L E Y + + W+E K +++
Sbjct: 730 SLYKFEG----EDYREKQKLGMVEWIEPPKRERKAN 761
Score = 244 (91.0 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 58/148 (39%), Positives = 86/148 (58%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 280 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 338
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 339 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 391
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV 293
F+LRR K + + LPP EI V
Sbjct: 392 KPFLLRRIKTDVEKS----LPPKKEIKV 415
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 379 (138.5 bits), Expect = 6.0e-59, Sum P(3) = 6.0e-59
Identities = 91/243 (37%), Positives = 133/243 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q GL WL+ Y +N +L DEMGLGKT+Q IS L++L + + GP L++ P
Sbjct: 624 QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPT 683
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
SV W E+ ++ P ++L Y G +++R+ +K Q P F V +T+
Sbjct: 684 SVMLNWEMELKRWCPSFKILTYYGAQKERK---------LKRQGW---TKPNAFHVCITS 731
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y +VL D + W Y I+DEAQ +KN S + L +F RRLL+TGTP+QN+L
Sbjct: 732 YKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLL-NFNSQRRLLLTGTPLQNSLM 790
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDA----VHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
ELW+LMHF MP VF + +F F + + S G +K L +L F+LR
Sbjct: 791 ELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKR----LHKVLRPFLLR 846
Query: 272 RTK 274
R K
Sbjct: 847 RVK 849
Score = 331 (121.6 bits), Expect = 6.0e-59, Sum P(3) = 6.0e-59
Identities = 82/231 (35%), Positives = 123/231 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F QMT+ LD+L+ FL + Y RLDGS R E+R A + F+ I
Sbjct: 2059 GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI------- 2111
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F F++STR+GGVG+NL ADTV+FY+ DWNP +D QA R HRIGQ V L
Sbjct: 2112 -----FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 2166
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV-GDDVVDREVKERTAVETDDLRSIIFGLHLFDPKA 523
++E TVEE I+++A +K L + G + K++T E +F + L +P
Sbjct: 2167 ISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE-------LFDMPLEEPSG 2219
Query: 524 IN----NEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEE 570
+ E+ ++ S ++E+ + ++ +A + + VA L E
Sbjct: 2220 SSVPSAPEDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAE 2270
Score = 37 (18.1 bits), Expect = 6.0e-59, Sum P(3) = 6.0e-59
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 551 QVSGKAGRKFEVNPVALLEESDLLMHES 578
+ G GRK E + V + + DL + ES
Sbjct: 3072 EAEGIRGRKSEGSMVVAVIQDDLDLAES 3099
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 386 (140.9 bits), Expect = 6.1e-59, Sum P(3) = 6.1e-59
Identities = 102/305 (33%), Positives = 167/305 (54%)
Query: 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP 86
++ E+ +L+ +Q+EG++WL+ + N +L DEMGLGKT+Q+I+ LS + FS
Sbjct: 837 ESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEM-FSAGVQ 895
Query: 87 GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE-HVKEQSQMSNVS 145
PF+++ PLS W E + +T + + Y G R+ I++ YE + K+
Sbjct: 896 SPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQ--YEMYCKDDKGHLIPG 952
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
FD L+TT++++L D L +I W +IDEA RLKN + L + L+ + ++L+
Sbjct: 953 AYKFDALITTFEMILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKM-LEIEHKVLL 1011
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QN + EL++L+HF P+ F + +FL F D K +EQ L+ IL
Sbjct: 1012 TGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGDL----------KTEEQVQKLQSIL 1061
Query: 266 SAFMLRRTKQKLVECGHLMLPPLT----EITVLQKKVYASILRKELPKLLALSSRTANHQ 321
MLRR K+ + + +L T E+T +QKK Y +IL + L +++ +N
Sbjct: 1062 KPMMLRRLKEDVEK--NLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGATQNSNVP 1119
Query: 322 SLQNT 326
+L NT
Sbjct: 1120 NLLNT 1124
Score = 310 (114.2 bits), Expect = 6.1e-59, Sum P(3) = 6.1e-59
Identities = 69/167 (41%), Positives = 101/167 (60%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L ++Y YER+DG +R R AAI FS +
Sbjct: 1186 GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDS-------- 1237
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ TRAGG+G+NL AADT + ++ DWNPQ D QA R HRIGQ V L
Sbjct: 1238 ---DRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1294
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDRE--VKERTAVETDDL 509
+T ++ E ++ +A KL L V+ ++E +++ + E +DL
Sbjct: 1295 ITRNSYEREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDL 1341
Score = 46 (21.3 bits), Expect = 6.1e-59, Sum P(3) = 6.1e-59
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 2 KYKERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKP 39
KY E L + KI D DE D V ++P
Sbjct: 615 KYTEDLDI--KITDDEDELDADVDVTTTPMPAVGHVQP 650
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 382 (139.5 bits), Expect = 6.1e-59, Sum P(2) = 6.1e-59
Identities = 103/290 (35%), Positives = 157/290 (54%)
Query: 21 DGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80
D Q + E+ L+ +Q+EG++WL+ + N +L DEMGLGKT+Q+I+FL Y
Sbjct: 996 DWQKSESSREYKNANALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFL-YEI 1054
Query: 81 FSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQ 140
+ + GPFLV+ PLS W E +T +L V+ Y G + R+ I+ YE +Q
Sbjct: 1055 YLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRKTIQA--YEMYYRDTQ 1111
Query: 141 MSNVS-PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
+ F ++TT++++L D L +PW IIDEA RLKN + L L+ M
Sbjct: 1112 GRIIKGAYKFHAVITTFEMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKM-MDM 1170
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259
++L+TGTP+QN + EL++L++F P F + + F+ F D K +EQ
Sbjct: 1171 EHKVLLTGTPLQNTVEELFSLLNFLEPDRFPSESTFMQEFGDL----------KTEEQVQ 1220
Query: 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLT----EITVLQKKVYASILRK 305
L+GIL MLRR K+ + + +L T E+T +QKK Y +IL K
Sbjct: 1221 KLQGILKPMMLRRLKEDVEK--NLAPKEETIIEVELTNVQKKYYRAILEK 1268
Score = 315 (115.9 bits), Expect = 6.1e-59, Sum P(2) = 6.1e-59
Identities = 73/169 (43%), Positives = 99/169 (58%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QM + LDIL+D+L R+Y YER+DG +R R AAI FS +
Sbjct: 1358 GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDS-------- 1409
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 1410 ---DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRL 1466
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV----GDDVVDREVKERTAVETDDL 509
+T ++ E + +A KL L V+ G + V++ + E +DL
Sbjct: 1467 ITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAANGVQQLSKKEIEDL 1515
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 376 (137.4 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 90/255 (35%), Positives = 135/255 (52%)
Query: 23 QTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS 82
+TPV F + +L+ +Q+ GL W++ Y +N +L DEMGLGKT+Q IS L+++ S
Sbjct: 547 KTPVP---FLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACS 603
Query: 83 QMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMS 142
+ GP L++ P SV W E K+ P L++L Y G ++R R+
Sbjct: 604 ESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGW----------- 652
Query: 143 NVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRR 202
+ P F V +T+Y V D Q W Y I+DEAQ +KN S + L + RR
Sbjct: 653 -MKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALL-NVRARRR 710
Query: 203 LLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLK 262
LL+TGTP+QN+L ELW+LMHF MP++F + + F F + + L
Sbjct: 711 LLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNAPLIGRLH 770
Query: 263 GILSAFMLRRTKQKL 277
+L F+LRR K+++
Sbjct: 771 KVLRPFILRRLKKEV 785
Score = 313 (115.2 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 65/146 (44%), Positives = 89/146 (60%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HR L+F QM++ LD+LQ FL Y Y RLDG+ E+R A + F+ +
Sbjct: 1205 HRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKV-------- 1256
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
F F++STR+GGVG+NL ADTVIFY+ DWNP +D QA R HRIGQ +V L+
Sbjct: 1257 ----FCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLI 1312
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGD 491
+E T+EE I+R+A +K RL + +
Sbjct: 1313 SERTIEENILRKATQKRRLGELAIDE 1338
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 375 (137.1 bits), Expect = 5.2e-58, Sum P(2) = 5.2e-58
Identities = 90/254 (35%), Positives = 140/254 (55%)
Query: 24 TPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ 83
TPV F + L+ +Q GL WL+ +N +L DEMGLGKT+Q I+ L++L ++
Sbjct: 904 TPVP---FLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAK 960
Query: 84 MSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSN 143
+ GP L++ P SV W E K+ P ++L Y G +++R+ ++R +
Sbjct: 961 GNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERK-LKRVGW----------- 1008
Query: 144 VSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRL 203
P F V +T+Y +V+ DQ + W Y I+DEAQ +KN S + +L +F RRL
Sbjct: 1009 TKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLL-NFSTERRL 1067
Query: 204 LMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263
L+TGTP+QN+L ELW+LMHF MP VF + +F F + + + T L
Sbjct: 1068 LLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRLHK 1127
Query: 264 ILSAFMLRRTKQKL 277
++ F+LRR K+++
Sbjct: 1128 VIRPFLLRRLKKEV 1141
Score = 314 (115.6 bits), Expect = 5.2e-58, Sum P(2) = 5.2e-58
Identities = 69/142 (48%), Positives = 89/142 (62%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVL+F QMT+ LD+L+ FL + Y RLDGS R E+R Q +ER
Sbjct: 1673 NGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQR---------QILMERFN-- 1721
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
G F F++STR+GGVG+NL ADTVIFY+ DWNP +D QA R HRIGQ V
Sbjct: 1722 -GDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1780
Query: 464 LVTEHTVEEVIMRRAERKLRLS 485
LV+E T+E I+++A +K LS
Sbjct: 1781 LVSERTIEVNILKKANQKRMLS 1802
Score = 44 (20.5 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 31/150 (20%), Positives = 57/150 (38%)
Query: 442 VDKQALQRAHRIGQMNHVLSINLVTEHT-VEEVIMRRAERKLRLSHNVVGDDVVDREVKE 500
V Q +Q+ R GQ + + NLV T V VI + + VV +
Sbjct: 3003 VTMQQIQQVMRSGQQGTLATTNLVLGKTSVGRVIPVSVASQANQRQTI---QVVSAASAQ 3059
Query: 501 RTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKF 560
A+ +LR+ + G + + S G + + A++H Q + +
Sbjct: 3060 --ALAAGNLRTHVAGPSIASTLKVAAPGS----AGGQTTQQTLIAALQHNQRQNASPVRL 3113
Query: 561 EV----NPVALLEESDLLMHESFASATSYP 586
+ N +A++++ H S A T+ P
Sbjct: 3114 QTTAGGNLLAVVQQQQQQQHTSIAGPTAGP 3143
Score = 38 (18.4 bits), Expect = 5.1e-29, Sum P(2) = 5.1e-29
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSI 512
N VT +++V+ + L ++ V+G V R + A + + ++I
Sbjct: 3001 NSVTMQQIQQVMRSGQQGTLATTNLVLGKTSVGRVIPVSVASQANQRQTI 3050
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 374 (136.7 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 104/295 (35%), Positives = 157/295 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+EG++WL+ + N +L DEMGLGKT+Q+I+FL + + + GPFL++ PLS
Sbjct: 913 LRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRTGIK-GPFLIIAPLS 971
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNV-SPLPFDVLLTT 155
W E +T L V+ Y G R+ +++ YE SQ + F ++TT
Sbjct: 972 TIANWEREFRTWT-HLNVIVYHGSVVSRQMLQQ--YEMYCRDSQGRVIRGAYRFQAVITT 1028
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
++++L L+ I W IIDEA RLKN + L + L ++L+TGTP+QN +
Sbjct: 1029 FEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSL-EHKVLLTGTPLQNTVE 1087
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQ 275
EL++L+HF P+ F + N F+ F D K +EQ L+ IL MLRR K+
Sbjct: 1088 ELFSLLHFLEPTRFPSENTFMQEFGDL----------KTEEQVQKLQAILKPMMLRRLKE 1137
Query: 276 ----KLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326
KL ++ E+T +QKK Y +IL K LA + AN +L NT
Sbjct: 1138 DVEKKLAPKEETIIE--VELTNIQKKYYRAILEKNF-SFLAKGAGQANVPNLLNT 1189
Score = 310 (114.2 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 68/145 (46%), Positives = 89/145 (61%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GH+VL+F+QM + LDIL+D+L R+Y YER+DG +R R AAI FS +
Sbjct: 1251 GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDS-------- 1302
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ TRAGG+G+NL AADT I ++ DWNPQ D QA R HRIGQ V L
Sbjct: 1303 ---DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRL 1359
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
+T ++ E + RA KL L V+
Sbjct: 1360 ITRNSYEREMFDRASLKLGLDKAVL 1384
Score = 47 (21.6 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 443 DKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKL 482
D + Q+ HR N + IN +T ++I RR RK+
Sbjct: 2588 DGRPKQKRHRCRNPNKI-DINSLTGEERVQIINRRNARKI 2626
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 366 (133.9 bits), Expect = 4.6e-57, Sum P(3) = 4.6e-57
Identities = 96/272 (35%), Positives = 143/272 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q GL WL+ Y +N +L DEMGLGKT+ IS ++YL + GP L++ P S
Sbjct: 781 LREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGVWGPHLIVVPSS 840
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W E ++ P L++ Y G R+ R K S+ SN F V +T+Y
Sbjct: 841 VLFNWEMEFKRWCPGLKIFTYHGTSRDRKANR-------KGWSK-SNA----FHVCITSY 888
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLY-NVLREHFLMPRRLLMTGTPIQNNLS 215
+V+ D + W Y I+DEA +KN + + N+L HF RRLL+TGTP+QNNL
Sbjct: 889 SMVMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNML--HFNTERRLLLTGTPLQNNLM 946
Query: 216 ELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS-LKGILSAFMLRRTK 274
ELW+LMHF MP +F + +F F + V + + E + L +L F+LRR K
Sbjct: 947 ELWSLMHFLMPDIFQSHREFQDWFSNPV-TGMIEGGDDVNEDIINRLHAVLRPFLLRRLK 1005
Query: 275 ---QKLVECGHLMLPPLTEITVLQKKVYASIL 303
+K + H + P + ++ QK +Y +
Sbjct: 1006 KDVEKQMPPKHTHIVPCS-MSRRQKFLYEEFI 1036
Score = 323 (118.8 bits), Expect = 4.6e-57, Sum P(3) = 4.6e-57
Identities = 65/145 (44%), Positives = 90/145 (62%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHR L+F QMT+ LDI + FL L Y+Y RLDGS + ++R F+ I
Sbjct: 1395 GHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKI------- 1447
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+F++STR+GG+GLNL ADTVIFY+ DWNP +D QA R HRIGQ V
Sbjct: 1448 -----FLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRF 1502
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
+T+HT+EE I++++ +K +L V+
Sbjct: 1503 ITQHTIEENILKKSNQKRQLDKMVI 1527
Score = 41 (19.5 bits), Expect = 4.6e-57, Sum P(3) = 4.6e-57
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 581 SATSYPDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
S +S P +S S + + + SS++ + S +R P+D
Sbjct: 2177 SGSSTPSSSLSSSTSSISTSNKDKKKSSSSSSSSKKRLVPDD 2218
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 352 (129.0 bits), Expect = 6.0e-57, Sum P(2) = 6.0e-57
Identities = 93/252 (36%), Positives = 131/252 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q +GL+WL Y N +L DEMGLGKT+Q IS L+YL + + GP L++ P S
Sbjct: 696 LRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTS 755
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W E +F P +VL Y G +QR KE+ + N P F V + +Y
Sbjct: 756 VLLNWEMEFKRFAPGFKVLTYYGSPQQR-----------KEKRKGWN-KPDAFHVCIVSY 803
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+V+ DQ + W Y ++DEA +KN S + L +F RRLL+TGTP+QNNL+E
Sbjct: 804 QLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALL-NFNTQRRLLLTGTPLQNNLAE 862
Query: 217 LWALMHFCMP---------SVFGTLNQFLSTFKDAVHS--SSAPKRGKIKEQ---FTSLK 262
LW+L++F MP S F L+ F F V + G+ KE L
Sbjct: 863 LWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLH 922
Query: 263 GILSAFMLRRTK 274
+L ++LRR K
Sbjct: 923 QVLRPYLLRRLK 934
Score = 321 (118.1 bits), Expect = 6.0e-57, Sum P(2) = 6.0e-57
Identities = 67/155 (43%), Positives = 94/155 (60%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
++GHR L+F QMT+ LD+L+ FL Y Y RLDG+ + E+R F+ S I
Sbjct: 1260 DNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRIT---- 1315
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
VF++S+R+GG+G+NL ADTVIFY+ DWNP +DKQ R HRIGQ V
Sbjct: 1316 --------VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIY 1367
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVD 495
V+EHT+E I+++A +K +L + V+ GD D
Sbjct: 1368 RFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTD 1402
Score = 43 (20.2 bits), Expect = 9.3e-28, Sum P(2) = 9.3e-28
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 516 LHLFDPK-AINNEESDDLRLSGLNSMVEKVIAMRH-EQVSGKAGRKFEVNPVALLEESDL 573
L LF +N + D L L + ++ +K + H E++S K V V L E++
Sbjct: 1026 LKLFKKNNQVNRVDLDFLNL--VFTLNDKDLTSYHAEEISKLTCVKNFVEEVNKLRETNK 1083
Query: 574 LMHESFASATSYPDLDEASYRSWVEKFK 601
+ E F A+ D Y + K K
Sbjct: 1084 QLQEEFGEASFLNFQDANQYFKYSNKQK 1111
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 348 (127.6 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 92/275 (33%), Positives = 155/275 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L+ R++ ++RLDGSI+ E R A+ HF+ +
Sbjct: 796 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE---------- 845
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 846 -GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 904
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREV-------KERTAVETDDLRSII-FG 515
VT+ +VEE I+ RA++K+ L H V+ D + V T ++L +I+ FG
Sbjct: 905 VTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFG 964
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQ----VSGKAGRKFEVNPVALLEE 570
LF K EE + + ++ ++++ +E V + +F+V + ++E
Sbjct: 965 AEELF--KEPEGEEQEPQEMD-IDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1021
Query: 571 SDLLMHESFASATSYPDLDEASYRSWVEKFKEASE 605
D+ + E ++ ++ ++ S R +E+ + E
Sbjct: 1022 DDIEL-EPERNSRNWEEIIPESQRRRIEEEERQKE 1055
Score = 327 (120.2 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 77/200 (38%), Positives = 114/200 (57%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 477 ELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 535
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + P++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 536 STLTSWQREIQTWAPQMNAVVYLGDITSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 588
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + + + T Q
Sbjct: 589 YEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDLVTIDSDTAPSCTIPQ---- 644
Query: 216 ELWALMHFCMPSVFGTLNQF 235
ELW L+HF MP F + F
Sbjct: 645 ELW-LLHFIMPEKFSSWEDF 663
Score = 177 (67.4 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 57/173 (32%), Positives = 87/173 (50%)
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
L F++LLTTY+++L D+ FL + W + +DEA RLKN S+LY L + + +
Sbjct: 580 LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDLVTIDSDTAPS 639
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-FTSLKGIL 265
T Q ELW L+HF MP F + F + H GK +E + SL L
Sbjct: 640 CTIPQ----ELW-LLHFIMPEKFSSWEDF-----EEEH-------GKGREYGYASLHKEL 682
Query: 266 SAFMLRRTKQKLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K+ + + + + E++ LQK+ Y IL + K L+ S+
Sbjct: 683 EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNY-KALSKGSK 734
Score = 42 (19.8 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 249 PKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEIT 292
P + +K+ KG+ L T+Q L++ G + L E T
Sbjct: 1509 PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT 1552
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 348 (127.6 bits), Expect = 8.3e-57, Sum P(2) = 8.3e-57
Identities = 92/275 (33%), Positives = 155/275 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L+ R++ ++RLDGSI+ E R A+ HF+ +
Sbjct: 796 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE---------- 845
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G++ F F++STRAGG+G+NL +ADTV+ ++ DWNPQ D QA RAHRIGQ V L
Sbjct: 846 -GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRL 904
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREV-------KERTAVETDDLRSII-FG 515
VT+ +VEE I+ RA++K+ L H V+ D + V T ++L +I+ FG
Sbjct: 905 VTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFG 964
Query: 516 LH-LFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQ----VSGKAGRKFEVNPVALLEE 570
LF K EE + + ++ ++++ +E V + +F+V + ++E
Sbjct: 965 AEELF--KEPEGEEQEPQEMD-IDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDE 1021
Query: 571 SDLLMHESFASATSYPDLDEASYRSWVEKFKEASE 605
D+ + E ++ ++ ++ S R +E+ + E
Sbjct: 1022 DDIEL-EPERNSRNWEEIIPESQRRRIEEEERQKE 1055
Score = 326 (119.8 bits), Expect = 8.3e-57, Sum P(2) = 8.3e-57
Identities = 77/200 (38%), Positives = 114/200 (57%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 477 ELRDYQLNGL-WLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPL 535
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + P++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 536 STLTSWQREIQTWAPQMNAVVYLGDITSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 588
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + +DEA RLKN S+LY L + + + T Q
Sbjct: 589 YEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDLVTIDSDTAPSCTIPQ---- 644
Query: 216 ELWALMHFCMPSVFGTLNQF 235
ELW+L HF MP F + F
Sbjct: 645 ELWSL-HFIMPEKFSSWEDF 663
Score = 176 (67.0 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 57/173 (32%), Positives = 87/173 (50%)
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
L F++LLTTY+++L D+ FL + W + +DEA RLKN S+LY L + + +
Sbjct: 580 LKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDLVTIDSDTAPS 639
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-FTSLKGIL 265
T Q ELW+L HF MP F + F + H GK +E + SL L
Sbjct: 640 CTIPQ----ELWSL-HFIMPEKFSSWEDF-----EEEH-------GKGREYGYASLHKEL 682
Query: 266 SAFMLRRTKQKLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K+ + + + + E++ LQK+ Y IL + K L+ S+
Sbjct: 683 EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNY-KALSKGSK 734
Score = 42 (19.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 249 PKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEIT 292
P + +K+ KG+ L T+Q L++ G + L E T
Sbjct: 1508 PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT 1551
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 376 (137.4 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 88/241 (36%), Positives = 137/241 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
++ +Q+ GL+W+ Y +N +L DEMGLGKT+Q IS L+++K + GP LV+ P +
Sbjct: 542 MRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLAHIKEAYNDNGPHLVVVPAT 601
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
+ W E + P L ++RY G +R +R YE K++ F+V+LTTY
Sbjct: 602 ILANWEREFQTWCPSLSIVRYYGNLREREELR---YELKKKRPGKD------FNVILTTY 652
Query: 157 DVVLM--DQGFLSQIPWCYTIIDEAQRLKNPSSVLY-NVLREHFLMPRRLLMTGTPIQNN 213
+++ D+GFL + + + I+DEAQ +KN S Y N+ + RLL+TGTP+QNN
Sbjct: 653 NLLFANNDRGFLKRFDYSFLILDEAQNIKNSDSKRYKNIFK--IGAHHRLLLTGTPLQNN 710
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L ELW+L++F MP +FG++ + + + I T +K ILS F+LRR
Sbjct: 711 LYELWSLLNFLMPHIFGSVKKDNYLLNQLLEYNGDDCDSAI----TRMKKILSPFILRRL 766
Query: 274 K 274
K
Sbjct: 767 K 767
Score = 289 (106.8 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 63/143 (44%), Positives = 92/143 (64%)
Query: 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406
+VL+F+QMT+ LDIL+D L++ Y++ RLDGS ER + I HFS + I
Sbjct: 1003 KVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIP-------- 1054
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466
VF++ST +GG+G+NL A+ VIFY+ +NPQVD+QA RAHR+GQ V+ L+
Sbjct: 1055 ----VFLLSTNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLA 1110
Query: 467 EHTVEEVIMRRAERKLRLSHNVV 489
E+TV+ I A +K +L+ NV+
Sbjct: 1111 ENTVDINIHESANQKKKLNDNVL 1133
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 359 (131.4 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 80/191 (41%), Positives = 107/191 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+P+Q +GL+WL Y N +L DEMGLGKT+Q IS L+YL GP L++ P S
Sbjct: 823 LRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVPTS 882
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W E KF P +VL Y G +QR R+ + P F V +T+Y
Sbjct: 883 VMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNK------------PDAFHVCITSY 930
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+V+ DQ + W Y I+DEA +KN S + L +F RLL+TGTP+QNNL E
Sbjct: 931 QLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALL-NFNTENRLLLTGTPLQNNLME 989
Query: 217 LWALMHFCMPS 227
LW+L++F MPS
Sbjct: 990 LWSLLYFLMPS 1000
Score = 311 (114.5 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 66/147 (44%), Positives = 91/147 (61%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+ GHR L+F QMT+ LDIL+ FL + Y Y RLDG+ + E+R F+ I
Sbjct: 1380 SQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIP---- 1435
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
VF++STR+GG+G+NL ADTVIFY+ DWNP +DKQ R HRIGQ+ V
Sbjct: 1436 --------VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIY 1487
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVV 489
V+E+T+E I+++A +K +L NVV
Sbjct: 1488 RFVSEYTIESNIIKKANQKRQLD-NVV 1513
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 390 (142.3 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 98/280 (35%), Positives = 156/280 (55%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
ELKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+++ + + GP L++ P
Sbjct: 432 ELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIAFLAHI-YQEGDRGPHLIVVPA 490
Query: 96 SVTDGWVSEMAKFTPKLEVL-RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLT 154
S D W+ E+ + P+L VL YVG +E R+++R + +SN + F+V++T
Sbjct: 491 STLDNWIREVNLWCPELNVLFYYVGSQEDRKHLR----------ADISN-RVVDFNVIVT 539
Query: 155 TYDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
TY+ + D+ ++ Y I DE LKN SSV Y L RLL+TGTP+Q
Sbjct: 540 TYNCAISSSDDRSLFRKVKLNYAIFDEGHMLKNMSSVRYQQLMR-INAKHRLLLTGTPVQ 598
Query: 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLR 271
NNL EL +L++F MP +F + + + ++ + KE+ K I+ F+LR
Sbjct: 599 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILR 658
Query: 272 RTKQKLVECGHLMLPP------LTEITVLQKKVYASILRK 305
R K ++++ LPP L ++ Q+++Y +L K
Sbjct: 659 RVKDEVLK----QLPPKKDHIELCAMSEKQEQLYCDLLNK 694
Score = 266 (98.7 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 58/149 (38%), Positives = 90/149 (60%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ FL+ ++ Y RLDG + +R I F+
Sbjct: 807 GDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDM--------- 857
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ V I L
Sbjct: 858 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREVKVIKL 914
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDV 493
+++ T+EE +++ ++KL+L ++ D+
Sbjct: 915 ISKGTIEESMLKMNQQKLKLEQDMTAADL 943
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 333 (122.3 bits), Expect = 9.7e-56, Sum P(2) = 9.7e-56
Identities = 90/274 (32%), Positives = 132/274 (48%)
Query: 18 DERDGQTPVDAAEFGVT----AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI 73
DE +G + A + V L+ +Q GL WL + N +L DEMGLGKT+Q I
Sbjct: 424 DEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTI 483
Query: 74 SFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133
+ L++L + + GP L++ P SV W E KF P ++L Y G ++R+ R Y+
Sbjct: 484 ALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYK 543
Query: 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193
P + V +T+Y +VL D + W Y I+DEA +KN S + L
Sbjct: 544 ------------PDTWHVCITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSL 591
Query: 194 REHFLMPRRLLMTGTPIQNNLSELWALMHFCMP-------SVFGTLNQFLSTFK---DAV 243
+F RLL+TGTP+QNNL ELW+L++F MP S F L F F D +
Sbjct: 592 L-NFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRL 650
Query: 244 HSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKL 277
+ L +L ++LRR K ++
Sbjct: 651 IEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKTEV 684
Score = 328 (120.5 bits), Expect = 9.7e-56, Sum P(2) = 9.7e-56
Identities = 112/368 (30%), Positives = 179/368 (48%)
Query: 255 KEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALS 314
+E+ +++K I+ F K +V+ LP L T+ + +Y + RK P L S
Sbjct: 921 EERASNMKEIIQRFACITPKAVVVD-----LPELFCKTIPRDLLY-EVSRKINP-LHQAS 973
Query: 315 SRTA----NHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKY 370
+R A + + LQ G ++GHRVL+F QMT+ LDIL+ FL + +
Sbjct: 974 TRLAIAFPDKRLLQYDC-GKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGH 1032
Query: 371 SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADT 430
Y RLDG+ + E+R F+ I VF++STR+GG+G+NL ADT
Sbjct: 1033 RYLRLDGATKIEQRQILTERFNNDDKIP------------VFILSTRSGGLGINLTGADT 1080
Query: 431 VIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV- 489
VIFY+ DWNPQ+D QA R+HRIGQ V L++E+TVE ++RRA +K L V+
Sbjct: 1081 VIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQ 1140
Query: 490 GDDVVDREVKERTAVETDDL--RSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAM 547
G + ++ ++ DL S+ D + NEE+ ++ L+ + A
Sbjct: 1141 GGEFTTEWFRKADVLDLFDLDDESLKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQ 1200
Query: 548 RHEQVSGKAGRKF-EVN-PVALL-EESDLLMHESFASATSYPDLDEASYRSWVEKFK-EA 603
+ S +F E + P A+L ++S L +S +E S + +++ + E
Sbjct: 1201 VARKESALEQTEFSETSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSEL 1260
Query: 604 SESSSNTI 611
E T+
Sbjct: 1261 EEDLDETV 1268
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 362 (132.5 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 107/337 (31%), Positives = 172/337 (51%)
Query: 2 KYKERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVN-VLL 60
+Y E +I+ ND D D+ +F LKP+Q+ G+++L+ Y G+ +L
Sbjct: 181 RYSEVETSTVRIVTQNDIDDACKAEDS-DFQPI--LKPYQLVGVNFLLLLYKKGIEGAIL 237
Query: 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGE 120
DEMGLGKT+QAI++L+ L PGP LV+CP SV + W E+ K+ P VL+Y G
Sbjct: 238 ADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGA 297
Query: 121 REQRRNIRRTMYEHVKEQSQMSNVS-PLPFDVLLTTYDVVLM-------DQGFLSQIPWC 172
R Y +E + +S P PF+VLL Y + D+ L + W
Sbjct: 298 A-------RAAYS--RELNSLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRWRWS 348
Query: 173 YTIIDEAQRLKNPSSVLY-NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGT 231
++DEA LK+ +S + N++ +RL++TGTP+QN+L ELW+L+ F +P +F T
Sbjct: 349 CVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTT 408
Query: 232 LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPL--T 289
N L +A + E T +K IL F+LRR K +++ ++P +
Sbjct: 409 ENVDLKKLLNAEDT----------ELITRMKSILGPFILRRLKSDVMQ---QLVPKIQRV 455
Query: 290 EITVLQKK---VYASILRK----ELPKLLALSSRTAN 319
E ++++K Y + + +L+ LSS++ N
Sbjct: 456 EYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLN 492
Score = 286 (105.7 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 75/175 (42%), Positives = 101/175 (57%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
SGHRVL+F+Q T LDIL+ L++ +Y RLDGS + +R + F+ +I
Sbjct: 603 SGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSI------ 656
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
F ++STRAGG GLNL ADTVI ++ D+NPQ+D+QA R HRIGQ V
Sbjct: 657 ------FACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFR 710
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDV-VDR--EVKERTAVETDDLRSIIFG 515
LVT+ TV+E I A+RKL L V+ V VD + E+T E L S++ G
Sbjct: 711 LVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDDNGDTPEKTMGEI--LASLLMG 763
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 383 (139.9 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 91/254 (35%), Positives = 143/254 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNKGPHLIVVPAS 555
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ +E ++V++TTY
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEE-----------YNVIVTTY 604
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 663
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 724 KEEVLK----QLPP 733
Score = 267 (99.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 920
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 921 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 977
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 978 ISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1008
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 383 (139.9 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 91/254 (35%), Positives = 143/254 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNKGPHLIVVPAS 555
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ +E ++V++TTY
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEE-----------YNVIVTTY 604
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 663
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 724 KEEVLK----QLPP 733
Score = 267 (99.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 920
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 921 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 977
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 978 ISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1008
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 383 (139.9 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 91/254 (35%), Positives = 143/254 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNKGPHLIVVPAS 555
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ +E ++V++TTY
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEE-----------YNVIVTTY 604
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 663
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 724 KEEVLK----QLPP 733
Score = 267 (99.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 920
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 921 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 977
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 978 ISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1008
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 383 (139.9 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 91/254 (35%), Positives = 143/254 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 500 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNKGPHLIVVPAS 558
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ +E ++V++TTY
Sbjct: 559 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEE-----------YNVIVTTY 607
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 608 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 666
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 667 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 726
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 727 KEEVLK----QLPP 736
Score = 267 (99.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 873 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 923
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 924 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 980
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 981 ISQGTIEESMLKINQQKLKLEQDMTTIDEGD 1011
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 380 (138.8 bits), Expect = 2.1e-55, Sum P(2) = 2.1e-55
Identities = 93/278 (33%), Positives = 153/278 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL F + + GP L++ P S
Sbjct: 492 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-FQEGNKGPHLIVVPAS 550
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L VL Y G +E+R+ IR ++ ++ ++V++TTY
Sbjct: 551 TIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYED-----------YNVIVTTY 599
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 600 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INARNRLLLTGTPVQNN 658
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + + + KE+ K I+ F+LRR
Sbjct: 659 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRV 718
Query: 274 KQKLVECGHLMLPP------LTEITVLQKKVYASILRK 305
K+++++ +LPP L ++ Q+++Y+ + +
Sbjct: 719 KEEVLK----LLPPKKDRIELCAMSEKQEQLYSGLFNR 752
Score = 270 (100.1 bits), Expect = 2.1e-55, Sum P(2) = 2.1e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 865 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 915
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 916 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 972
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 973 ISQGTIEESMLKINQQKLKLEQDMTTVDEAD 1003
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 379 (138.5 bits), Expect = 2.9e-55, Sum P(2) = 2.9e-55
Identities = 93/278 (33%), Positives = 153/278 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL F + + GP L++ P S
Sbjct: 495 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-FQEGNKGPHLIVVPAS 553
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L VL Y G +E+R+ IR ++ ++ ++V++TTY
Sbjct: 554 TIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYED-----------YNVIVTTY 602
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 603 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INARNRLLLTGTPVQNN 661
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + + + KE+ K I+ F+LRR
Sbjct: 662 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRV 721
Query: 274 KQKLVECGHLMLPP------LTEITVLQKKVYASILRK 305
K+++++ +LPP L ++ Q+++Y+ + +
Sbjct: 722 KEEVLK----LLPPKKDQIELCAMSEKQEQLYSGLFNR 755
Score = 270 (100.1 bits), Expect = 2.9e-55, Sum P(2) = 2.9e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 868 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 918
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 919 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 975
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 976 ISQGTIEESMLKINQQKLKLEQDMTTVDEAD 1006
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 337 (123.7 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 92/272 (33%), Positives = 147/272 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L +Q+ GL+WL + +N +L DEMGLGKT+Q I+FL+YLK + +S L++ P
Sbjct: 288 QLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVVPS 347
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S D W +E++++ P+L V +Y G +++RR +R + + FDVLLTT
Sbjct: 348 STLDNWEAEISRWCPELVVEKYHGSQDERRRMR----------GRFAKDGFTGFDVLLTT 397
Query: 156 YDVVLMDQGFLSQIPWC---YTIIDEAQRLKNPSSVLY-NVLREHFLMPRRLLMTGTPIQ 211
Y +V C Y I DEA LKN ++ Y N++ + M R+L+TGTP+Q
Sbjct: 398 YHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARM--RILLTGTPLQ 455
Query: 212 NNLSELWALMHFCMPSVFG-TLNQFLSTF-KDAVHSSSAPKRGKIKE-QFTSLKGILSAF 268
NNL EL +L+ F MP F ++ S F K + + +E Q K I+ F
Sbjct: 456 NNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPF 515
Query: 269 MLRRTKQKLVECGHLMLPPLTEITVL-QKKVY 299
+LRR K+ +++ L + ++ + Q+K+Y
Sbjct: 516 VLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIY 547
Score = 308 (113.5 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 72/188 (38%), Positives = 108/188 (57%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVLLF+Q T LDI++++L +RK+ + RLDG+ R I F+
Sbjct: 668 GHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFN------------ 715
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G + FVF++ST+AGGVG+NL AADT + ++ D+NP DKQA R HR+GQ V L
Sbjct: 716 GDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRL 775
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
++E T+EE I+ AE KL+L ++ ++ EV E+ V L + GL + +
Sbjct: 776 ISESTIEEGILMAAEEKLKLEKDITSNE--KGEVHEQRCVVK--LLTTALGLDKDQEEQL 831
Query: 525 NNEESDDL 532
NN ++ +
Sbjct: 832 NNSLNNSI 839
Score = 46 (21.3 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 4 KERLQVAAKIIHDNDERDGQTP 25
K+R+QV A D+D D QTP
Sbjct: 50 KKRIQVMAD--SDSDGNDSQTP 69
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 376 (137.4 bits), Expect = 4.7e-55, Sum P(2) = 4.7e-55
Identities = 95/279 (34%), Positives = 155/279 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + VN++L DEMGLGKT+QAI+FL++L + S GP LV+ P S
Sbjct: 474 LKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDS-GPHLVVVPAS 532
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E ++ P + +L Y G +E+R+++R + V E F+V++TTY
Sbjct: 533 TMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVE-----------FNVIVTTY 581
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPR-RLLMTGTPIQN 212
+ + D+ ++ + + DE LKN S++ Y L L R RLL+TGTP+QN
Sbjct: 582 NCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMT--LNARSRLLLTGTPVQN 639
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRR 272
NL EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 640 NLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRR 699
Query: 273 TKQKLVECGHLMLPP------LTEITVLQKKVYASILRK 305
K ++++ LPP +++ Q+++Y+ +L K
Sbjct: 700 VKSEVLK----QLPPKQDKIKFCQMSKKQEQLYSDLLNK 734
Score = 271 (100.5 bits), Expect = 4.7e-55, Sum P(2) = 4.7e-55
Identities = 59/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDI++ FL ++ Y RLDG + ER I F+
Sbjct: 847 GDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDM--------- 897
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D F+F++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ V I L
Sbjct: 898 ---DIFIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKL 954
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+ + T+EE +++ +++KLRL ++ +D D
Sbjct: 955 IGKGTIEESMLKISQQKLRLEQDMTTNDTGD 985
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 379 (138.5 bits), Expect = 6.0e-55, Sum P(2) = 6.0e-55
Identities = 90/254 (35%), Positives = 143/254 (56%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNNGPHLIVVPAS 555
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ ++ ++V++TTY
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-----------YNVIVTTY 604
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 663
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + S+ + KE+ K I+ F+LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 724 KEEVLK----QLPP 733
Score = 267 (99.0 bits), Expect = 6.0e-55, Sum P(2) = 6.0e-55
Identities = 60/151 (39%), Positives = 90/151 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 920
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 921 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 977
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+++ T+EE +++ ++KL+L ++ D D
Sbjct: 978 ISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1008
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 349 (127.9 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 93/250 (37%), Positives = 130/250 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q GL WL Y +N +L DEMGLGKT+Q I+ L++L GP LV+ P S
Sbjct: 825 LREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTS 884
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W E K+ P +++ Y G +E+RR RR M + S ++VL+T+Y
Sbjct: 885 VILNWEMEFKKWCPGFKIMTYYGNQEERRQKRR---------GWMDDNS---WNVLITSY 932
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+VL DQ L + W Y I+DEA +KN S + L F RLL+TGTP+QNNL+E
Sbjct: 933 QLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQALLT-FRTRARLLLTGTPLQNNLTE 991
Query: 217 LWALMHFCMPSV--------FGTLNQFLSTFKDAVHSSSAPKR----GKIKEQFTSLKGI 264
LW+L+ F MP+ F L F F+ V R + K+ T L +
Sbjct: 992 LWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTV 1051
Query: 265 LSAFMLRRTK 274
L ++LRR K
Sbjct: 1052 LRPYILRRLK 1061
Score = 304 (112.1 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 71/170 (41%), Positives = 101/170 (59%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHR L+F QMT+ LD+L+ FL + + Y RLDG+ + E+R Q +R ++
Sbjct: 1389 GHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQR---------QILTDRFNND- 1438
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
N F++S+R+GG+G+NL ADTVIFY+ DWNP +DKQ R HRIGQ V
Sbjct: 1439 --NRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRF 1496
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETD-DLRSII 513
V+E+T+E I+R+A +K L DDVV +E + T T D+R +I
Sbjct: 1497 VSEYTIESNILRKANQKRML------DDVVIQEGEFTTDYFTKLDVRDMI 1540
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 379 (138.5 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 90/254 (35%), Positives = 142/254 (55%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
LKP+Q GL+WL + G+N +L DEMGLGKT+QAI+FL+YL + + + GP L++ P S
Sbjct: 499 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-YQEGNKGPHLIVVPAS 557
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
D W+ E+ + P L+VL Y G +E+R+ IR ++ +E ++V++TTY
Sbjct: 558 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEE-----------YNVIVTTY 606
Query: 157 DVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
+ + D+ ++ Y I DE LKN S+ Y L RLL+TGTP+QNN
Sbjct: 607 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNN 665
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
L EL +L++F MP +F + + + + + KE+ K I+ F+LRR
Sbjct: 666 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRV 725
Query: 274 KQKLVECGHLMLPP 287
K+++++ LPP
Sbjct: 726 KEEVLK----QLPP 735
Score = 264 (98.0 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 60/151 (39%), Positives = 89/151 (58%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDIL+ L+ ++ Y RLDG + ER I F+
Sbjct: 872 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDM--------- 922
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++ST+AGG+G+NL +A+ VI ++ D NP DKQA R HR+GQ VL I L
Sbjct: 923 ---DIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 979
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
+ + T+EE +++ ++KL+L ++ D D
Sbjct: 980 IGQGTIEESMLKINQQKLKLEQDMTTVDEGD 1010
>GENEDB_PFALCIPARUM|PFF1185w [details] [associations]
symbol:PFF1185w "iswi protein homologue"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 353 (129.3 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 75/196 (38%), Positives = 121/196 (61%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LKPHQ +G+ WL++ +L G +L DEMGLGKT+Q + FLSYLK +++ GP L++ PL
Sbjct: 337 QLKPHQEDGVEWLLKSFLTG-GAILADEMGLGKTIQTLCFLSYLKCNKID-GPHLIVVPL 394
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W+ E+ +FTP L ++ G + +R H KE +++ +D+ +TT
Sbjct: 395 STVGNWLREIHRFTPHLTCIKICGSKNERT--------HAKED-RLAEKGL--YDLYVTT 443
Query: 156 YDVVLMDQGFLSQ-IP-WCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
Y+ V ++ F + IP W ++DEA R+KN S + + + + + RLL+TGTP+QNN
Sbjct: 444 YETVKNEEEFFVETIPKWQCIVLDEAHRIKNQSGAIRHSM-DRVVGNMRLLLTGTPLQNN 502
Query: 214 LSELWALMHFCMPSVF 229
+EL+ L++F P +F
Sbjct: 503 SAELFTLINFMFPDIF 518
Score = 300 (110.7 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 78/202 (38%), Positives = 117/202 (57%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
H+VL+F Q LD L+++ + R + Y RLDGS R IR F++ +I Y
Sbjct: 1094 HKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSI---Y---- 1146
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
F+++ISTRAGG+G+NL AA+ VI Y++DWNP +D QA+ RAHRIGQ V L+
Sbjct: 1147 ----FIYLISTRAGGLGINLTAANHVIMYDEDWNPFIDLQAIDRAHRIGQKREVNVWKLM 1202
Query: 466 TEHTVEEVIMRRAERKLRLSHNVV----GDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
TE TVEE + R E+KL+L VV +D++D +E+ + +D++R ++ LH
Sbjct: 1203 TEWTVEERMAFRREQKLKLDKLVVQTQDDEDMLDN-FEEK--LSSDEIRKLM--LH--GK 1255
Query: 522 KAINNEESDDLRLSGLNSMVEK 543
AI N + + L +E+
Sbjct: 1256 AAIQNMDVESTNNFPLEFFIER 1277
Score = 49 (22.3 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 237 STFKDAVHSSSAPKRGKIKEQ-FTSLKGILSAFMLRRTKQKLV 278
+T K V+ + + IKE+ S++ +L MLRR K++ +
Sbjct: 574 NTSKVNVNIGNIDLKSAIKEEDLKSIRCLLDKIMLRRLKEQAI 616
Score = 39 (18.8 bits), Expect = 5.4e-27, Sum P(3) = 5.4e-27
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVS 553
D + NN ES D + G+ + +MR E+ S
Sbjct: 1872 DDEDYNNNESKDKIMKGVGTTFLSDGSMRFEKDS 1905
Score = 39 (18.8 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 232 LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266
+ +L+ K+++ +SS + IKE+ L + S
Sbjct: 2344 IQNYLNKMKNSLKNSSHLDKNTIKEKLKELNYVNS 2378
Score = 37 (18.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 233 NQFLSTFKDAVHSSS 247
N+F+S+ +D H ++
Sbjct: 294 NEFISSLEDEAHQNA 308
Score = 37 (18.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 YKERLQVAAKIIHDNDERD 21
Y +R K+I D+D+ D
Sbjct: 883 YNKRKDKKKKVISDDDDDD 901
>UNIPROTKB|C6KT82 [details] [associations]
symbol:PFF1185w "Smarca-related protein" species:36329
"Plasmodium falciparum 3D7" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00490 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844505 RefSeq:XP_966228.1 ProteinModelPortal:C6KT82
IntAct:C6KT82 PRIDE:C6KT82 EnsemblProtists:PFF1185w:mRNA
GeneID:3885918 KEGG:pfa:PFF1185w EuPathDB:PlasmoDB:PF3D7_0624600
OMA:EERMAFR ProtClustDB:CLSZ2515339 Uniprot:C6KT82
Length = 2719
Score = 353 (129.3 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 75/196 (38%), Positives = 121/196 (61%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LKPHQ +G+ WL++ +L G +L DEMGLGKT+Q + FLSYLK +++ GP L++ PL
Sbjct: 337 QLKPHQEDGVEWLLKSFLTG-GAILADEMGLGKTIQTLCFLSYLKCNKID-GPHLIVVPL 394
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W+ E+ +FTP L ++ G + +R H KE +++ +D+ +TT
Sbjct: 395 STVGNWLREIHRFTPHLTCIKICGSKNERT--------HAKED-RLAEKGL--YDLYVTT 443
Query: 156 YDVVLMDQGFLSQ-IP-WCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
Y+ V ++ F + IP W ++DEA R+KN S + + + + + RLL+TGTP+QNN
Sbjct: 444 YETVKNEEEFFVETIPKWQCIVLDEAHRIKNQSGAIRHSM-DRVVGNMRLLLTGTPLQNN 502
Query: 214 LSELWALMHFCMPSVF 229
+EL+ L++F P +F
Sbjct: 503 SAELFTLINFMFPDIF 518
Score = 300 (110.7 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 78/202 (38%), Positives = 117/202 (57%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
H+VL+F Q LD L+++ + R + Y RLDGS R IR F++ +I Y
Sbjct: 1094 HKVLIFTQFQLVLDELEEYCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSI---Y---- 1146
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
F+++ISTRAGG+G+NL AA+ VI Y++DWNP +D QA+ RAHRIGQ V L+
Sbjct: 1147 ----FIYLISTRAGGLGINLTAANHVIMYDEDWNPFIDLQAIDRAHRIGQKREVNVWKLM 1202
Query: 466 TEHTVEEVIMRRAERKLRLSHNVV----GDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
TE TVEE + R E+KL+L VV +D++D +E+ + +D++R ++ LH
Sbjct: 1203 TEWTVEERMAFRREQKLKLDKLVVQTQDDEDMLDN-FEEK--LSSDEIRKLM--LH--GK 1255
Query: 522 KAINNEESDDLRLSGLNSMVEK 543
AI N + + L +E+
Sbjct: 1256 AAIQNMDVESTNNFPLEFFIER 1277
Score = 49 (22.3 bits), Expect = 3.8e-54, Sum P(3) = 3.8e-54
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 237 STFKDAVHSSSAPKRGKIKEQ-FTSLKGILSAFMLRRTKQKLV 278
+T K V+ + + IKE+ S++ +L MLRR K++ +
Sbjct: 574 NTSKVNVNIGNIDLKSAIKEEDLKSIRCLLDKIMLRRLKEQAI 616
Score = 39 (18.8 bits), Expect = 5.4e-27, Sum P(3) = 5.4e-27
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVS 553
D + NN ES D + G+ + +MR E+ S
Sbjct: 1872 DDEDYNNNESKDKIMKGVGTTFLSDGSMRFEKDS 1905
Score = 39 (18.8 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 232 LNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266
+ +L+ K+++ +SS + IKE+ L + S
Sbjct: 2344 IQNYLNKMKNSLKNSSHLDKNTIKEKLKELNYVNS 2378
Score = 37 (18.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 233 NQFLSTFKDAVHSSS 247
N+F+S+ +D H ++
Sbjct: 294 NEFISSLEDEAHQNA 308
Score = 37 (18.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 YKERLQVAAKIIHDNDERD 21
Y +R K+I D+D+ D
Sbjct: 883 YNKRKDKKKKVISDDDDDD 901
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 427 (155.4 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 96/281 (34%), Positives = 155/281 (55%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK-FSQMSPGPFLV 91
+ EL +Q+EGL WL+ Y ++ +L DEMGLGKT+Q IS +YLK F L+
Sbjct: 880 IGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNINVKNLI 939
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W+SE ++ P L V+ Y G + +R++I + + E FD+
Sbjct: 940 IVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAKKLLEQT-------------FDI 986
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
+TT+D+V+ ++ FL +I W Y ++DE R+KN S ++V F R+L+TGTP+Q
Sbjct: 987 CITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKS-RFHVFLSEFKSKYRILLTGTPLQ 1045
Query: 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSA 267
NNLSELW+L++F +P +F + F F ++H+ +E+ L +L
Sbjct: 1046 NNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRLHSVLLP 1105
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV-LQKKVYASILRKEL 307
FMLRR K+ +++ LP E + ++ +Y IL K++
Sbjct: 1106 FMLRRVKKDVLKS----LPKKYEYNIHIELSLYQKILYKQI 1142
Score = 210 (79.0 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 405 GGN-DAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
GGN DA +F++STR+G +GLNL ADTVI ++ D+NP D QA+ R HRIGQ N V
Sbjct: 1398 GGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFR 1457
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVV 489
+T VEE++ ++A+ KL ++ V+
Sbjct: 1458 FITLSGVEELVFKKAQHKLSINDKVI 1483
Score = 126 (49.4 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 54/237 (22%), Positives = 101/237 (42%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
H+VL+F+QMT+ ++IL D+LE R Y Y RLDG+I +ER I F+ + +E Y +
Sbjct: 1210 HKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFN--NNVE--YKKDE 1265
Query: 406 GNDAFVFMISTR----AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
G M +G +N+ + + N ++ + + G N +S
Sbjct: 1266 GKQPNCEMPGNENMNMSGNENMNMSVNENM---NMSVNENMNMSGNENMNMSGNENMNMS 1322
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
N + E + + +S N + + +K ++ D S +
Sbjct: 1323 GNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMISSQNEKDTSSQSVKISELKK 1382
Query: 522 KAINNEE-SDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHE 577
+ IN+ + DD ++G N + +I + + SG G + ++ +SD H+
Sbjct: 1383 EEINDFQIMDDKNVNGGNQ--DAMIFILSTR-SGSLGLNLQTADTVIIFDSDFNPHQ 1436
Score = 39 (18.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 113 EVLRYVGEREQRRNIRRTMYEHVKEQS 139
++ Y RE NI + E VK+ S
Sbjct: 851 KICNYKNARENYYNISHVVKEKVKQPS 877
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 427 (155.4 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 96/281 (34%), Positives = 155/281 (55%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK-FSQMSPGPFLV 91
+ EL +Q+EGL WL+ Y ++ +L DEMGLGKT+Q IS +YLK F L+
Sbjct: 880 IGGELMKYQLEGLEWLVSLYNNNLHGILADEMGLGKTIQTISLFAYLKEFKNNINVKNLI 939
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDV 151
+ PLS W+SE ++ P L V+ Y G + +R++I + + E FD+
Sbjct: 940 IVPLSTLPNWISEFNRWCPSLNVITYRGNKLERKHIAKKLLEQT-------------FDI 986
Query: 152 LLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ 211
+TT+D+V+ ++ FL +I W Y ++DE R+KN S ++V F R+L+TGTP+Q
Sbjct: 987 CITTFDLVIKEKSFLMKISWNYIVVDEGHRMKNNKS-RFHVFLSEFKSKYRILLTGTPLQ 1045
Query: 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ----FTSLKGILSA 267
NNLSELW+L++F +P +F + F F ++H+ +E+ L +L
Sbjct: 1046 NNLSELWSLLNFLLPKIFSSCVDFEKWFVKSLHNEKDVYEHITEEEQLLIINRLHSVLLP 1105
Query: 268 FMLRRTKQKLVECGHLMLPPLTEITV-LQKKVYASILRKEL 307
FMLRR K+ +++ LP E + ++ +Y IL K++
Sbjct: 1106 FMLRRVKKDVLKS----LPKKYEYNIHIELSLYQKILYKQI 1142
Score = 210 (79.0 bits), Expect = 8.0e-54, Sum P(2) = 8.0e-54
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 405 GGN-DAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
GGN DA +F++STR+G +GLNL ADTVI ++ D+NP D QA+ R HRIGQ N V
Sbjct: 1398 GGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVFR 1457
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVV 489
+T VEE++ ++A+ KL ++ V+
Sbjct: 1458 FITLSGVEELVFKKAQHKLSINDKVI 1483
Score = 126 (49.4 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 54/237 (22%), Positives = 101/237 (42%)
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
H+VL+F+QMT+ ++IL D+LE R Y Y RLDG+I +ER I F+ + +E Y +
Sbjct: 1210 HKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFN--NNVE--YKKDE 1265
Query: 406 GNDAFVFMISTR----AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
G M +G +N+ + + N ++ + + G N +S
Sbjct: 1266 GKQPNCEMPGNENMNMSGNENMNMSVNENM---NMSVNENMNMSGNENMNMSGNENMNMS 1322
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
N + E + + +S N + + +K ++ D S +
Sbjct: 1323 GNENMNMSGNENMNMSGNENMNMSGNENMNMSGNENIKMISSQNEKDTSSQSVKISELKK 1382
Query: 522 KAINNEE-SDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHE 577
+ IN+ + DD ++G N + +I + + SG G + ++ +SD H+
Sbjct: 1383 EEINDFQIMDDKNVNGGNQ--DAMIFILSTR-SGSLGLNLQTADTVIIFDSDFNPHQ 1436
Score = 39 (18.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 113 EVLRYVGEREQRRNIRRTMYEHVKEQS 139
++ Y RE NI + E VK+ S
Sbjct: 851 KICNYKNARENYYNISHVVKEKVKQPS 877
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 360 (131.8 bits), Expect = 8.5e-54, Sum P(2) = 8.5e-54
Identities = 86/248 (34%), Positives = 134/248 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ A L+ +Q GL WL+ Y +N +L DEMGLGKTLQ IS LSYL + GP LV+
Sbjct: 658 IKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVI 717
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P S+ W E+ +F P ++L Y G + +R R + K+ F +
Sbjct: 718 VPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFN--KDS----------FHIC 765
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+++Y V+ D + W Y I+DEA +KN ++ +N++ LL+TGTP+QN
Sbjct: 766 ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILS-LKRDNCLLITGTPLQN 824
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI---KEQFTSLKGILSAFM 269
+L ELW+L+HF MP++F + F F D ++ A ++ KI KE L ++ ++
Sbjct: 825 SLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNL--AIEKSKIHHSKELIDRLHTVIRPYI 882
Query: 270 LRRTKQKL 277
LRR K+ +
Sbjct: 883 LRRLKKNV 890
Score = 286 (105.7 bits), Expect = 8.5e-54, Sum P(2) = 8.5e-54
Identities = 68/193 (35%), Positives = 104/193 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G++ LLF Q + LDIL+ FL YS+ RLDGS + E+R + F+ +I
Sbjct: 1784 GNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI------- 1836
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+F+ STR+G +G+NL AA+ VIFY+ DWNP +DKQA+ R HRIGQ V
Sbjct: 1837 -----FIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRF 1891
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
V E+TVEE I ++ +K +L + + + +TD + + ++ K +
Sbjct: 1892 VCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTDPTHNKDWFTNVDTIKEV 1951
Query: 525 -----NNEESDDL 532
NN++ DD+
Sbjct: 1952 FINKKNNDDDDDM 1964
Score = 41 (19.5 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
I Y++ N + + L + IG MN ++ + V H
Sbjct: 912 ILYDEFINNKNVQNTLNTGNYIGLMNILIQLRKVCNH 948
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 360 (131.8 bits), Expect = 8.5e-54, Sum P(2) = 8.5e-54
Identities = 86/248 (34%), Positives = 134/248 (54%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ A L+ +Q GL WL+ Y +N +L DEMGLGKTLQ IS LSYL + GP LV+
Sbjct: 658 IKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVI 717
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P S+ W E+ +F P ++L Y G + +R R + K+ F +
Sbjct: 718 VPTSILINWEIELKRFCPCFKILSYYGNQNERYKKRVGWFN--KDS----------FHIC 765
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+++Y V+ D + W Y I+DEA +KN ++ +N++ LL+TGTP+QN
Sbjct: 766 ISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWNIILS-LKRDNCLLITGTPLQN 824
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI---KEQFTSLKGILSAFM 269
+L ELW+L+HF MP++F + F F D ++ A ++ KI KE L ++ ++
Sbjct: 825 SLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNL--AIEKSKIHHSKELIDRLHTVIRPYI 882
Query: 270 LRRTKQKL 277
LRR K+ +
Sbjct: 883 LRRLKKNV 890
Score = 286 (105.7 bits), Expect = 8.5e-54, Sum P(2) = 8.5e-54
Identities = 68/193 (35%), Positives = 104/193 (53%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G++ LLF Q + LDIL+ FL YS+ RLDGS + E+R + F+ +I
Sbjct: 1784 GNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI------- 1836
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F+F+ STR+G +G+NL AA+ VIFY+ DWNP +DKQA+ R HRIGQ V
Sbjct: 1837 -----FIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRF 1891
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
V E+TVEE I ++ +K +L + + + +TD + + ++ K +
Sbjct: 1892 VCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTDPTHNKDWFTNVDTIKEV 1951
Query: 525 -----NNEESDDL 532
NN++ DD+
Sbjct: 1952 FINKKNNDDDDDM 1964
Score = 41 (19.5 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
I Y++ N + + L + IG MN ++ + V H
Sbjct: 912 ILYDEFINNKNVQNTLNTGNYIGLMNILIQLRKVCNH 948
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 424 (154.3 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
Identities = 113/299 (37%), Positives = 158/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 696 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 755
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR---TMYEHV----KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR T ++ K+ S+M + + F
Sbjct: 756 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFTFEDNAIRGGKKASRMKKEAAVKF 815
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 816 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 874
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 875 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 924
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 925 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 980
Score = 208 (78.3 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
Identities = 65/192 (33%), Positives = 97/192 (50%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1036 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NA 1084
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
G F F++STRAGG L + + + + ++ RAHR+GQ V I
Sbjct: 1085 PGAQGFCFLLSTRAGGPCLWSPLRSSERNVDSSLSRKTMQKTYSRAHRLGQNKKVNDIRF 1144
Query: 465 VTEH-TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPK 522
VT+ + + A++++ L+H VV + + E DD+ + FG LF +
Sbjct: 1145 VTKSISGRSASSQVAQKEMMLTHLVVRPG--GSKTGSMSKQELDDI--LKFGTEELFKDE 1200
Query: 523 AI---NNEESDD 531
A +N+E +D
Sbjct: 1201 ATEGGDNKEGED 1212
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP 146
SE + +TP + + +G ++++++ + E +E+ + P
Sbjct: 74 SEGSDYTPGKKKKKKLGPKKEKKSKAKRKEEEDEEEEDDDSKEP 117
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 366 (133.9 bits), Expect = 9.5e-53, Sum P(2) = 9.5e-53
Identities = 79/203 (38%), Positives = 123/203 (60%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L+ +Q+ GL W++ Y +N +L DEMGLGKT+Q ++ ++YL + + GP L++ P +
Sbjct: 981 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1040
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
V W SE+ + P + + YVG ++QR + SQ V + F+VL+TTY
Sbjct: 1041 VLVNWKSELHTWLPSVSCIYYVGTKDQRSKLF----------SQ--EVCAMKFNVLVTTY 1088
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
+ ++ D+ LS++ W Y IIDEAQR+K+ SVL L + + RRLL+TGTP+QN+L E
Sbjct: 1089 EFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYRCQRRLLLTGTPLQNDLKE 1147
Query: 217 LWALMHFCMPSVFGTLNQFLSTF 239
LW+L++ +P VF F F
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWF 1170
Score = 270 (100.1 bits), Expect = 9.5e-53, Sum P(2) = 9.5e-53
Identities = 85/283 (30%), Positives = 144/283 (50%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+GHRVLLF+ MT+ LDIL+++L+ R+ Y R+DG+ E+R +AI F+
Sbjct: 1323 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDT------- 1375
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
D F+F++S RA G GLNL ADTV+ Y+ D NP+ ++QA+ RAHRIGQ V I
Sbjct: 1376 ----DCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIY 1431
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNV-VGDDVV--DREVKERTAVETDDLRSIIFGLHLFD 520
+ E VE++ + E +LR +V + DD+ DR + + ++++ + + + D
Sbjct: 1432 M--EAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQ--YKIDMAD 1487
Query: 521 PKAINNEESDDLRLSGLNSM-VEKVI--AMRHEQVSGKAGRKFEVNPVALLEESDLLMHE 577
+ IN D M +E ++ R+++ EVN + E ++ + +
Sbjct: 1488 -EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFD 1546
Query: 578 SFASATSYPDLDEASYRSWVEKFKEASESSSN-TIAESGRRRS 619
+ + E + V K+ AS N T+A+ ++ S
Sbjct: 1547 QMDEEFDWTE--EMTNHEQVPKWLRASTREVNATVADLSKKPS 1587
Score = 38 (18.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 196 HFLMPRRLLMTGTPIQNNLSE 216
H + P + +G P+Q + +E
Sbjct: 380 HLVQPTNGMPSGNPLQTSANE 400
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 360 (131.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 96/296 (32%), Positives = 153/296 (51%)
Query: 19 ERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSY 78
ER + P+ L +Q+ G+ WLI Y +N +LGDEMGLGKT+Q ++FLSY
Sbjct: 376 ERCTEGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSY 435
Query: 79 LKFSQMSP-GPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKE 137
LK Q+ GP L++ P S + W+ E K+ P +++L Y G +++R+++R VK+
Sbjct: 436 LK--QIGKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHLRH----RVKK 489
Query: 138 QSQMSNVSPLPFDVLLTTYDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLR 194
Q DV+LTTY++V D+ F Y I DE LKN S Y L
Sbjct: 490 QKDH-------IDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLM 542
Query: 195 EHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGT----LNQFLSTFKDAVHSSSAPK 250
+ +++L+TGTP+QNNL EL +LM+F + VF + L FK +
Sbjct: 543 K-VKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFKQLGPALDTKN 601
Query: 251 RGKIKE-QFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVL--QKKVYASIL 303
+ ++ + K IL ++LRR K +++ + E+ + QK++Y +I+
Sbjct: 602 KALYQQDRIEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIV 657
Score = 266 (98.7 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 66/167 (39%), Positives = 96/167 (57%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G +VL+F+Q T LDIL+ +L +R YSY+RLDG +R I F++
Sbjct: 769 GDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSK--------- 819
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D FVF++STRAGG+G+NL +A+ +I ++ D+NP DKQA R HR+GQ V L
Sbjct: 820 ---DLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRL 876
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVG------DDVVDREVKERTAVE 505
V++ TVE ++ A++KL+L V D+ RE+KE E
Sbjct: 877 VSKGTVEVGMLALAKKKLQLEKQVTDGVKGQLDEDALRELKEEEGGE 923
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 327 (120.2 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 88/261 (33%), Positives = 140/261 (53%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+LK +Q+ G++WL Y ++ +L DEMGLGKT Q ++F + L Q GP LV+ P
Sbjct: 549 QLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALL-LEQGHHGPHLVVVPS 607
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W+ E+A+F P L V Y G +++R NIR E ++E + +D+L+TT
Sbjct: 608 STLENWLRELARFCPSLRVEPYYGSQQERANIR----EAIEENE-------IKYDILVTT 656
Query: 156 YDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
Y + D+ FL + + DE LKN S Y L + RLL+TGTP+QN
Sbjct: 657 YQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLM-NLNANFRLLLTGTPLQN 715
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI--KEQFTSLKGILSAFML 270
NL EL +L+ F +P++F + L A ++ A + K++ + K +++ F+L
Sbjct: 716 NLKELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVL 775
Query: 271 RRTKQKLVECGHLMLPPLTEI 291
RR K +++ LP T+I
Sbjct: 776 RRRKNQVLND----LPKKTQI 792
Score = 302 (111.4 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 75/195 (38%), Positives = 108/195 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G R+LLF+Q TQ LDIL+ L+ K SY RLDGS + E R Q I++ + E
Sbjct: 940 GSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVR---------QDIIDQFHKE- 989
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
D VF++ST+AGG G+NL A+ VI Y+ +NP D QA RAHR+GQ+ V I L
Sbjct: 990 --EDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRL 1047
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI 524
+T++T+EE I + A KL L ++ D E+ ER + D + G + P+
Sbjct: 1048 ITDNTIEEYIQKLANTKLALDMSLSSDGKDREEIGERLVQDMLDEENN--GNNT-KPEIT 1104
Query: 525 NNEESDDLRLSGLNS 539
NE + ++S N+
Sbjct: 1105 GNESDGEFKVSSSNN 1119
Score = 42 (19.8 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 525 NNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFASATS 584
N+EESD LS + +++ A H + RKF + D++ E + +A
Sbjct: 830 NDEESDGKSLSAGHVLMQLRKAANHALLF----RKFYDDEKLKQMAKDIMQEEQYKNANE 885
Query: 585 ---YPDLDEAS 592
Y D++ S
Sbjct: 886 QYIYEDMEVMS 896
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 365 (133.5 bits), Expect = 2.2e-51, Sum P(2) = 2.2e-51
Identities = 102/273 (37%), Positives = 148/273 (54%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RVL+F+QMT+ LDIL+D+ R Y Y RLDG +ER Q +I Y+E
Sbjct: 220 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDER---------QDSINA-YNEP 269
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVFM+STRAGG+G+NL AD VI Y+ DWNPQVD QA+ RAHRIGQ V
Sbjct: 270 NSTK-FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF 328
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSII-FGL-HLFDP 521
+T++TVEE I+ RAE KLRL V+ +VD+ + + + D++ +I G H+F
Sbjct: 329 ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK---IGKDEMLQMIRHGATHVFAS 385
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHESFAS 581
K +E +D+ + G+ K A +E++S K G + + ES + E
Sbjct: 386 K--ESEITDE-DIDGILERGAKKTAEMNEKLS-KMGES-SLRNFTMDTESSVYNFEG--- 437
Query: 582 ATSYPDLDEASYRSWVEKFKEASESSSNTIAES 614
Y + + ++ W+E K E +N A++
Sbjct: 438 -EDYREKQKIAFTEWIEPPKR--ERKANYAADA 467
Score = 243 (90.6 bits), Expect = 2.2e-51, Sum P(2) = 2.2e-51
Identities = 59/165 (35%), Positives = 96/165 (58%)
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
+DV +T+Y++++ ++ + W Y +IDEA R+KN S L ++RE F RLL+TGT
Sbjct: 1 WDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLTGT 59
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL ELW+L++F +P VF + + F S F ++ K K+ E+ L +L F
Sbjct: 60 PLQNNLHELWSLLNFLLPDVFNSADDFDSWFD--TNNCLGDK--KLVER---LHMVLRPF 112
Query: 269 MLRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKEL 307
+LRR K + + LPP E+ + +Q++ Y IL K++
Sbjct: 113 LLRRIKADVEKS----LPPKKEVKIYVGLSKMQREWYTRILMKDI 153
>UNIPROTKB|J9NZH0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:AAEX03026896
Ensembl:ENSCAFT00000048721 Uniprot:J9NZH0
Length = 850
Score = 337 (123.7 bits), Expect = 6.1e-51, Sum P(2) = 6.1e-51
Identities = 71/175 (40%), Positives = 104/175 (59%)
Query: 65 GLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQR 124
GLGKTLQ I+ L YLK + PGP +VL P S W++E ++ P L V+ +VG+++ R
Sbjct: 3 GLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDAR 62
Query: 125 RNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN 184
R + P +DV +T+Y++V+ ++ + W Y +IDEA R+KN
Sbjct: 63 AAFIR------------DEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKN 110
Query: 185 PSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF 239
S L ++RE F RLL+TGTP+QNNL ELWAL++F +P VF + + F S F
Sbjct: 111 EKSKLSEIVRE-FKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF 164
Score = 272 (100.8 bits), Expect = 6.1e-51, Sum P(2) = 6.1e-51
Identities = 78/216 (36%), Positives = 116/216 (53%)
Query: 394 QSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI 453
+ AIE A + F+FM+STRAGG+G+NL +AD VI Y+ DWNPQVD QA+ RAHRI
Sbjct: 334 KEAIEAF--NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 391
Query: 454 GQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD-VVDREVKERTAVETDDLRSI 512
GQ V L+T++TVEE I+ RAE KLRL V+ ++D++ + A E + L+ I
Sbjct: 392 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ-SNKLAKE-EMLQMI 449
Query: 513 IFGL-HLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAGRKFEVNPVALLEES 571
G H+F K +E +D+ ++ L EK A +E++ K G + + E
Sbjct: 450 RHGATHVFASK--ESELTDE-DITTLLERGEKKTAEMNERLQ-KMGES-SLRNFRMDTEQ 504
Query: 572 DLLMHESFASATSYPDLDEASYRSWVEKFKEASESS 607
L E Y + + W+E K +++
Sbjct: 505 SLYKFEG----EDYREKQKLGMVEWIEPPKRERKAN 536
Score = 244 (91.0 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 58/148 (39%), Positives = 86/148 (58%)
Query: 146 PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
P +DV +T+Y++V+ ++ + W Y +IDEA R+KN S L ++RE F RLL+
Sbjct: 72 PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE-FKSTNRLLL 130
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265
TGTP+QNNL ELWAL++F +P VF + + F S F + + K+ E+ L +L
Sbjct: 131 TGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD----TKNCLGDQKLVER---LHAVL 183
Query: 266 SAFMLRRTKQKLVECGHLMLPPLTEITV 293
F+LRR K + + LPP EI V
Sbjct: 184 KPFLLRRIKTDVEKS----LPPKKEIKV 207
Score = 45 (20.9 bits), Expect = 8.3e-20, Sum P(2) = 8.3e-20
Identities = 37/156 (23%), Positives = 63/156 (40%)
Query: 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQI 169
PK E+ Y+G + +R + + E S SN + D+L ++L+ +
Sbjct: 201 PKKEIKVYLGLSKMQREWFVILAFFISENSNNSNKNH-KLDILNV---IMLLREAKCCGA 256
Query: 170 PWCYTIIDEAQRLKNPSSVLYNVLREHFLMP---------RRLLMTGTPIQNNLSELWAL 220
+C +D L + S+ + VL + L P R +T LS L
Sbjct: 257 SFCLPSLD---LLPSTLSISHIVLFKMTLFPGMKMILRQKSRCFLTSDSQFAFLSALPDY 313
Query: 221 MHFCMPSVF--GTLNQFLSTFK-DAVHSSSAPKRGK 253
H+ PS F Q+L +K +A+ + +AP K
Sbjct: 314 EHW--PSYFYRSISGQYLFVYKKEAIEAFNAPNSSK 347
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 347 (127.2 bits), Expect = 8.3e-51, Sum P(2) = 8.3e-51
Identities = 95/283 (33%), Positives = 154/283 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
+L+ +Q+ GL WLI + ++ +L DEMGLGKT+QAI+FL++L + + GP L+ P
Sbjct: 447 KLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHL-YEKGIKGPHLITVPS 505
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S D WV E+ + P L+VL Y G E R+ +R Q ++ + + F+++++T
Sbjct: 506 STLDNWVRELGLWCPSLKVLIYYGSVEDRKYLR---------QDILTGL--IDFNIIVST 554
Query: 156 YDVVL---MDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
Y++ + D+ ++ Y + DE LKN +S+ Y L RLL+TGTP+QN
Sbjct: 555 YNLTIGNDHDRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMT-INAEHRLLLTGTPLQN 613
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRR 272
NL EL +L++F MPS+F + +S SS + K++ + I+ F+LRR
Sbjct: 614 NLLELMSLLNFIMPSMFSSSTSQISKMFST--RSSEEESSFHKDRIAQARLIMKPFILRR 671
Query: 273 TKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPK 309
K ++++ LPP E ++ Q K+Y IL K L K
Sbjct: 672 VKSEVLK----ELPPKMEKIEMCPMSDAQHKLY-DILFKRLKK 709
Score = 262 (97.3 bits), Expect = 8.3e-51, Sum P(2) = 8.3e-51
Identities = 61/159 (38%), Positives = 92/159 (57%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G RV+LF+Q T LDI++ L+ + Y RLDGS ER I ++ I
Sbjct: 817 GDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEI------- 869
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
FVF++STRAGG G+NL +A+TVI ++ D NP DKQA R HR+GQ V I L
Sbjct: 870 -----FVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKL 924
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTA 503
+++ ++E+ ++R + KL+L ++ D+ D + E+ A
Sbjct: 925 ISKDSIEDCMLRVGQEKLKLEQDMTTDEGEDGAITEQMA 963
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 348 (127.6 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 94/277 (33%), Positives = 147/277 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLCPL 95
LK +Q G++WL Y ++ +L D+MGLGKT Q ISF +YLK Q++ PGP LV+ P
Sbjct: 572 LKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLK--QINEPGPHLVVVPS 629
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S + W+ E KF P L++ Y G ++R +R + + + +DV++TT
Sbjct: 630 STLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGK-----------YDVIVTT 678
Query: 156 YDVVL---MDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
Y++ D FL + + DE LKN +S + L + RLL+TGTP+QN
Sbjct: 679 YNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMK-IRANFRLLLTGTPLQN 737
Query: 213 NLSELWALMHFCMPSVFGTLNQ-FLSTFKDAVHSSSAPKRGK---IKEQFTSLKGILSAF 268
NL EL +L+ F MP++F + + F + FK ++ K +E T K ++ F
Sbjct: 738 NLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQEAITRAKTMMKPF 797
Query: 269 MLRRTKQKLVECGHLMLPP------LTEITVLQKKVY 299
+LRR K ++++ HL PP E+ +QKK+Y
Sbjct: 798 ILRRRKDQVLK--HL--PPKHTHIQYCELNAIQKKIY 830
Score = 263 (97.6 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 63/168 (37%), Positives = 97/168 (57%)
Query: 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406
+VL+F+ TQ LDIL+ L Y + RLDGS + +R Q I++ Y +
Sbjct: 968 KVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDR---------QLLIDKFYED--- 1015
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466
D +F++ST+AGG G+NLV A+ VI ++Q +NP D+QA RAHR+GQ V L+T
Sbjct: 1016 KDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLIT 1075
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIF 514
+ ++EE I + A+ KL L + + +D ++V E +D L II+
Sbjct: 1076 KDSIEEKIHQLAKNKLALD-SYISEDKKSQDVLESKV--SDMLEDIIY 1120
Score = 41 (19.5 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 8/39 (20%), Positives = 23/39 (58%)
Query: 479 ERKLRLSHN-VVGDDVVDREVKERTAVETDDLRSIIFGL 516
E ++ L H ++ D + ++ KE++ +++ +++I L
Sbjct: 833 EIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIMAL 871
Score = 41 (19.5 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 3 YKERLQVAAKIIHDNDERDGQTPVDAAE 30
Y + +Q+ + H +DG+ P DA E
Sbjct: 830 YDKEIQIVLE--HKRMIKDGELPKDAKE 855
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 340 (124.7 bits), Expect = 4.1e-50, Sum P(2) = 4.1e-50
Identities = 97/300 (32%), Positives = 154/300 (51%)
Query: 32 GVTAE---LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGP 88
G+ AE +K +Q+ G++WL + ++ +L D+MGLGKT Q I+FL++L + + GP
Sbjct: 556 GIMAEDLKMKNYQIVGINWLSLLFENELSCILADDMGLGKTCQVIAFLAHL-YEKGIKGP 614
Query: 89 FLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLP 148
LV+ P S + W+ E KF P L V+ Y ++ R IR EQ + N +
Sbjct: 615 HLVVVPSSTIENWLREFQKFCPTLSVMPYYADQNVRAQIR--------EQIE-GNRDDI- 664
Query: 149 FDVLLTTYDVVL--MDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPR-RLLM 205
+V++TTY + +D FL + +C + DE LK+ +SVLY L + R RLL+
Sbjct: 665 -NVVITTYTIAKGKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKLIR--IRARFRLLL 721
Query: 206 TGTPIQNNLSELWALMHFCMPSVFGTLNQFLS-TFKDAVHSSSAPKRGKIKEQ-FTSLKG 263
TGTP+QNNL EL +L+ F +P VF L F + + + Q K
Sbjct: 722 TGTPLQNNLQELASLLGFILPKVFQERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKS 781
Query: 264 ILSAFMLRRTKQKLVEC-GHLMLPPLTEITVLQKKVYASILRKELPKLL---ALSSRTAN 319
+L F+LRR K ++++ + E+ Q+++Y + E+ KLL A +T N
Sbjct: 782 MLKPFVLRRKKHQVIDLPAKISRVEYCEMNAAQREIYEHE-KNEVKKLLEDRAAGKKTGN 840
Score = 265 (98.3 bits), Expect = 4.1e-50, Sum P(2) = 4.1e-50
Identities = 62/162 (38%), Positives = 90/162 (55%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+G RVL+F+Q +DIL+ LE + + RLDG+ E+R QS ++ +
Sbjct: 941 NGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDR---------QSIMDTFHEN 991
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
D VF++ST+AGG G+NL A+ VI ++ +NPQ D QA RAHR+GQ V I
Sbjct: 992 T---DIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREVEVIR 1048
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVE 505
LVT+ T+EE I + KL L V G+D D + E ++
Sbjct: 1049 LVTKDTIEEQIYALGQTKLALDQAVAGEDGADSKKSEEAGIK 1090
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 417 (151.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 87/200 (43%), Positives = 126/200 (63%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
EL+ +Q+ GL+WL + G + +L DEMGLGKT+Q ISFL+YL GPFL++ PL
Sbjct: 155 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHELYGPFLLVVPL 214
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTT 155
S W E+ + P++ + Y+G+ R N+ RT +E + Q++ L F++LLTT
Sbjct: 215 STLTSWQREIQTWAPQMNAVVYLGDITSR-NMIRT-HEWMHPQTKR-----LKFNILLTT 267
Query: 156 YDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215
Y+++L D+ FL + W + IDEA RLKN S+LY L + F RLL+TGTP+QN+L
Sbjct: 268 YEILLKDKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLID-FKSNHRLLITGTPLQNSLK 326
Query: 216 ELWALMHFCMPSVFGTLNQF 235
ELW+L+HF MP F + F
Sbjct: 327 ELWSLLHFIMPEKFSSWEDF 346
Score = 258 (95.9 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 67/173 (38%), Positives = 98/173 (56%)
Query: 147 LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMT 206
L F++LLTTY+++L D+ FL + W + IDEA RLKN S+LY L + F RLL+T
Sbjct: 259 LKFNILLTTYEILLKDKSFLGGLNWVFIGIDEAHRLKNDDSLLYKTLID-FKSNHRLLIT 317
Query: 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKE-QFTSLKGIL 265
GTP+QN+L ELW+L+HF MP F + F + H GK +E + SL L
Sbjct: 318 GTPLQNSLKELWSLLHFIMPEKFSSWEDF-----EEEH-------GKGREFGYASLHKEL 365
Query: 266 SAFMLRRTKQKLVECGHLMLPPLT--EITVLQKKVYASILRKELPKLLALSSR 316
F+LRR K+ + + + + E++ LQK+ Y IL + K L+ S+
Sbjct: 366 EPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNY-KALSKGSK 417
Score = 177 (67.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 48/145 (33%), Positives = 80/145 (55%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
G+RVL+F+QM + LDIL ++L+ R++ ++RLDGSI+ E R A+ HF+ + + E L S
Sbjct: 479 GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGS-ENLTS-- 535
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F + ++ ++ + +L + WNP A + I V L
Sbjct: 536 ----LFCYHLTRKSLTLKTHLRNGHNIDIIAFFWNPCSCINACFLSLNILTKKQVNIYRL 591
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVV 489
VT+ +VEE I+ RA++K+ L H V+
Sbjct: 592 VTKGSVEEDILERAKKKMVLDHLVI 616
Score = 42 (19.8 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 249 PKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEIT 292
P + +K+ KG+ L T+Q L++ G + L E T
Sbjct: 1156 PVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYT 1199
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 506 (183.2 bits), Expect = 5.2e-49, Sum P(3) = 5.2e-49
Identities = 148/427 (34%), Positives = 212/427 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 842 KKASKMKKEAAVKFHVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNN 901
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 902 YPLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIAKEDQIKKLHDML 960
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKL-VECGHLMLPPLT 289
P +R K ++ + + ++ ++L R + L G + L
Sbjct: 961 GPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSLLN 1020
Query: 290 EITVLQKKVYASILRKELPKLLALSSRTANHQ---SLQNTASGXXXXXXXXXXXXYNSGH 346
+ L+K L P + + N S ASG GH
Sbjct: 1021 VVMDLKKCCNHPYL---FPTAATEAPKMPNGMYDGSALTKASGKLMLLFKMLKKLKEGGH 1077
Query: 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406
RVL+F+QMT+ LD+L+DFLE Y YER+DG + R Q AI+R A G
Sbjct: 1078 RVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMR---------QEAIDRF--NAPG 1126
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466
FVF++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1127 APQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVT 1186
Query: 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI- 524
+ +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +
Sbjct: 1187 KASVEERITQVAKKKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEQLFKDELGE 1243
Query: 525 -NNEESD 530
+N+E D
Sbjct: 1244 GDNKEED 1250
Score = 433 (157.5 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 116/303 (38%), Positives = 162/303 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 736 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 795
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR---TMYEHV----KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR T ++ K+ S+M + + F
Sbjct: 796 TIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKF 855
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + L +LL+TGTP
Sbjct: 856 HVLLTSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQ-HKLLLTGTP 914
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 915 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 964
Query: 270 LRRTKQKLVECGHLMLPPLTEITV------LQKKVYASILRKELPKLLALSSRTANHQ-S 322
LRR K + + H+ P TE+ V +QKK Y IL + AL++R +Q S
Sbjct: 965 LRRLKADVFK--HM--PSKTELIVRVELSPMQKKYYKYILTRNFE---ALNTRGGGNQVS 1017
Query: 323 LQN 325
L N
Sbjct: 1018 LLN 1020
Score = 40 (19.1 bits), Expect = 5.2e-49, Sum P(3) = 5.2e-49
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 586 PDLDEASYRSWVEKFKEASESSSNTIAESGRRRSPED 622
PD E S S ++ K ES +++ + G R + +D
Sbjct: 1606 PDEGEKSPSSAKKEEKTDKESEASSEKDGGSRENEKD 1642
Score = 38 (18.4 bits), Expect = 5.2e-49, Sum P(3) = 5.2e-49
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 16 DNDERDGQTPVDAAE 30
D+D+ DGQ P +++
Sbjct: 132 DDDDDDGQEPKSSSQ 146
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 520 (188.1 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 142/398 (35%), Positives = 208/398 (52%)
Query: 139 SQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFL 198
S++ + L F VLLT+Y+ + MD+ LS I W ++DEA RLKN S + LRE+ +
Sbjct: 725 SKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNI 784
Query: 199 MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSSAP- 249
R+L+TGTP+QNNL EL+ L++F P F L F + F + +H+ P
Sbjct: 785 Q-YRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSEISKEDQIEKLHNLLGPH 843
Query: 250 --KR-------GKIKEQFTSLKGILSAFMLRRTKQKL--------VECGHLMLPPLTEIT 292
+R G +Q ++ LSA + K L V+ G + + I
Sbjct: 844 MLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGGTQMSLINIIM 903
Query: 293 VLQKKV-YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLF 351
L+K + + K + L + +L A G + GHRVL+F
Sbjct: 904 ELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNA-GKFVLLQKMLRKLKDGGHRVLIF 962
Query: 352 AQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFV 411
+QMT LDIL+DF ++ Y YER+DGSI ++R Q AI+R Y+ G FV
Sbjct: 963 SQMTMMLDILEDFCDVEGYKYERIDGSITGQQR---------QDAIDR-YNAPGAKQ-FV 1011
Query: 412 FMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471
F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHR+GQ + V+ VT+ +VE
Sbjct: 1012 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE 1071
Query: 472 EVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
E I A++K+ L+H VV + ++ K + E DD+
Sbjct: 1072 ERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDV 1109
Score = 423 (154.0 bits), Expect = 2.3e-36, P = 2.3e-36
Identities = 104/283 (36%), Positives = 151/283 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EG++WL + G + +L DEMGLGKT+Q+++FL L + GPFL+ PLS
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVK-------EQSQMSNVSPLPF 149
W E + P V+ YVG+RE R IR + V + S++ + L F
Sbjct: 676 TIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF 735
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+ + MD+ LS I W ++DEA RLKN S + LRE+ + R+L+TGTP
Sbjct: 736 HVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQ-YRVLLTGTP 794
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L F + F S K ++Q L +L M
Sbjct: 795 LQNNLEELFHLLNFLAPDRFNQLESFTAEF------SEISK----EDQIEKLHNLLGPHM 844
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKL 310
LRR K ++ L E++ +QKK Y +IL + L
Sbjct: 845 LRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDAL 887
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 520 (188.1 bits), Expect = 1.9e-48, P = 1.9e-48
Identities = 142/398 (35%), Positives = 208/398 (52%)
Query: 139 SQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFL 198
S++ + L F VLLT+Y+ + MD+ LS I W ++DEA RLKN S + LRE+ +
Sbjct: 725 SKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNI 784
Query: 199 MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSSAP- 249
R+L+TGTP+QNNL EL+ L++F P F L F + F + +H+ P
Sbjct: 785 Q-YRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSEISKEDQIEKLHNLLGPH 843
Query: 250 --KR-------GKIKEQFTSLKGILSAFMLRRTKQKL--------VECGHLMLPPLTEIT 292
+R G +Q ++ LSA + K L V+ G + + I
Sbjct: 844 MLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVKNGGTQMSLINIIM 903
Query: 293 VLQKKV-YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLF 351
L+K + + K + L + +L A G + GHRVL+F
Sbjct: 904 ELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNA-GKFVLLQKMLRKLKDGGHRVLIF 962
Query: 352 AQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFV 411
+QMT LDIL+DF ++ Y YER+DGSI ++R Q AI+R Y+ G FV
Sbjct: 963 SQMTMMLDILEDFCDVEGYKYERIDGSITGQQR---------QDAIDR-YNAPGAKQ-FV 1011
Query: 412 FMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471
F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHR+GQ + V+ VT+ +VE
Sbjct: 1012 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE 1071
Query: 472 EVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
E I A++K+ L+H VV + ++ K + E DD+
Sbjct: 1072 ERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDV 1109
Score = 423 (154.0 bits), Expect = 2.3e-36, P = 2.3e-36
Identities = 104/283 (36%), Positives = 151/283 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EG++WL + G + +L DEMGLGKT+Q+++FL L + GPFL+ PLS
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVK-------EQSQMSNVSPLPF 149
W E + P V+ YVG+RE R IR + V + S++ + L F
Sbjct: 676 TIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF 735
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+ + MD+ LS I W ++DEA RLKN S + LRE+ + R+L+TGTP
Sbjct: 736 HVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQ-YRVLLTGTP 794
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L F + F S K ++Q L +L M
Sbjct: 795 LQNNLEELFHLLNFLAPDRFNQLESFTAEF------SEISK----EDQIEKLHNLLGPHM 844
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKL 310
LRR K ++ L E++ +QKK Y +IL + L
Sbjct: 845 LRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDAL 887
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 333 (122.3 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 79/221 (35%), Positives = 124/221 (56%)
Query: 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEV 114
G+ +L D+MGLGKTLQA+S Y+K ++ + FLV+CPLSV + W+SE++++T L
Sbjct: 8 GIGGILADDMGLGKTLQALSLFQYVKDNERADSKFLVVCPLSVLNTWMSEISRWTTGLRP 67
Query: 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYT 174
+ Y G E+R N+R + E P+++++TTY+ + D F + W +
Sbjct: 68 MAYHGGSEERENLRTCFRQQGAE----------PWNIVVTTYETLCSDLWFFQKTLWAHV 117
Query: 175 IIDEAQRLKNPSSV-LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLN 233
++DE R+KN S V R R+++TGTPIQN+L+ELW+++H+ P VF
Sbjct: 118 VLDEGHRIKNSRSKRTQGVYR--LRSENRIVLTGTPIQNDLTELWSILHWLYPDVFVPAT 175
Query: 234 QFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTK 274
L F++A S + K I + + L MLRRTK
Sbjct: 176 AKL--FENAF-SLTDGKFDSIF--LSHITRFLKVVMLRRTK 211
Score = 246 (91.7 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 60/149 (40%), Positives = 88/149 (59%)
Query: 347 RVLLFAQMTQTLDILQDFLELRK----YSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
+V++F+ QTLD+ +D LE+ K + Y RLDGS + R ++ F Q+ + Y
Sbjct: 350 KVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSV--FLFQN--DPRY- 404
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
VF++STRAGG GLNLV++ VIF + DWNPQV +QA R HRIGQ V
Sbjct: 405 -------MVFLLSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIF 457
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGD 491
+ + TVE+ + RR ++K L+ V+G+
Sbjct: 458 RIHAKGTVEDQMRRRMDKKAYLADKVMGE 486
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 313 (115.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 97/337 (28%), Positives = 168/337 (49%)
Query: 4 KERLQVAAKIIH-DNDERDGQTPVDAAEF-G-VTAELKPHQVEGLSWLIRRYLLGVNVLL 60
K RLQ K + ++D + D + G + +L +Q G+ WL + +L
Sbjct: 467 KLRLQDKEKCLKLEDDSEESDAEFDDFKMPGFLFRKLFKYQQTGVRWLWELHCQQAGGIL 526
Query: 61 GDEMGLGKTLQAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFTP 110
GDEMGLGKT+Q I+FL+ L +S++ GP +++CP +V WV E + P
Sbjct: 527 GDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWP 586
Query: 111 --KLEVLRYVGEREQRRN--IRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFL 166
++ +L G Q++ IR + H +L+T+Y + + Q +
Sbjct: 587 PFRVAILHETGSYTQKKEKLIRDIAHCH---------------GILITSYSYIRLMQDDI 631
Query: 167 SQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMP 226
S+ W Y I+DE +++NP++ + ++ F P R++++G+P+QNNL ELW+L F P
Sbjct: 632 SRHDWHYVILDEGHKIRNPNAAVTLACKQ-FRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 227 SVFGTLNQFLSTFKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECG 281
GTL F+ F + +S+++P + K + L+ ++ ++LRR K V+
Sbjct: 691 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSD-VKMS 749
Query: 282 HLMLPPLTE------ITVLQKKVYASIL-RKELPKLL 311
L LP E +T Q KVY + + KE+ ++L
Sbjct: 750 -LSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRIL 785
Score = 279 (103.3 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 76/201 (37%), Positives = 107/201 (53%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ G RVLLF+Q Q LDIL+ FL +KYSY ++DG+ R Q I R Y
Sbjct: 847 HKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASR---------QPLITR-Y 896
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+E FVF+++TR GG+G+NL A+ VI Y+ DWNP D QA +RA RIGQ V
Sbjct: 897 NE--DTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 954
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
L+T T+EE I R K L++ V+ D K+R +++DL + L P
Sbjct: 955 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDP------KQRRFFKSNDLYELFT---LTSP 1005
Query: 522 KAINNEESDDLRLSGLNSMVE 542
A + E+ + +G S V+
Sbjct: 1006 GASQSTETSAI-FAGTGSEVQ 1025
Score = 44 (20.5 bits), Expect = 9.4e-20, Sum P(2) = 9.4e-20
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR 181
+I R + V+ +Q + L DV YD +++QG L Q+ + I EA R
Sbjct: 79 HIDRHQIQTVEPSAQALELQGLGVDV----YDQDVLEQGVLRQVD---SAIHEASR 127
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 513 (185.6 bits), Expect = 3.8e-48, P = 3.8e-48
Identities = 161/519 (31%), Positives = 258/519 (49%)
Query: 5 ERL-QVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWL--IRRYLLGVNVLLG 61
ER+ Q+AAK+ ++ G V A + AEL+P+Q +GL+WL ++ Y LG +L
Sbjct: 604 ERVRQLAAKL----EQFTGVVAVTAPT-QLQAELRPYQQQGLNWLCFLKEYQLGG--ILA 656
Query: 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFL---VLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
D+MGLGKT+Q ++FL K + + GP L ++CP S+ W E AKF P L +
Sbjct: 657 DDMGLGKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPSLTLAVIH 716
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178
G + R + + E FDV++TTY +++ D + + + ++DE
Sbjct: 717 GAQ------RGPLLARLSE-----------FDVVVTTYPLMVRDNDYYQAQAFEHIVLDE 759
Query: 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLST 238
AQ++KN + + +++ P +L +TGTP++N+L EL +LM FC+P + GT F
Sbjct: 760 AQQIKNAQAKVSQMIKA-LQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAYFNKE 818
Query: 239 FKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLV-ECG-HLMLPPLTEITVLQK 296
F++ + + G EQ L ++ F+LRRTK ++V E + E+ Q+
Sbjct: 819 FRNRIE-----RYGD-SEQVKVLSQRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQR 872
Query: 297 KVYASI---LRKELPKLLALSSRTANH-------QSLQNTASGXXXXXXXXXXXXYNS-- 344
+Y SI + K++ +L A +H L+ N+
Sbjct: 873 NLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAK 932
Query: 345 --------------GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRH 390
G ++L+F+Q T L ++++ L+ + Y +L G R +
Sbjct: 933 LNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQ------- 985
Query: 391 FSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRA 450
VQ I++ + E D VF+IS +AGG GLNL AADTVI Y+ WNP ++QA RA
Sbjct: 986 --VQ--IDK-FQEG---DTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRA 1037
Query: 451 HRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV 489
HRIGQ N V L+ E TVEE I + K L+ +++
Sbjct: 1038 HRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSIL 1076
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 513 (185.6 bits), Expect = 3.8e-48, P = 3.8e-48
Identities = 161/519 (31%), Positives = 258/519 (49%)
Query: 5 ERL-QVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWL--IRRYLLGVNVLLG 61
ER+ Q+AAK+ ++ G V A + AEL+P+Q +GL+WL ++ Y LG +L
Sbjct: 604 ERVRQLAAKL----EQFTGVVAVTAPT-QLQAELRPYQQQGLNWLCFLKEYQLGG--ILA 656
Query: 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFL---VLCPLSVTDGWVSEMAKFTPKLEVLRYV 118
D+MGLGKT+Q ++FL K + + GP L ++CP S+ W E AKF P L +
Sbjct: 657 DDMGLGKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPSLTLAVIH 716
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178
G + R + + E FDV++TTY +++ D + + + ++DE
Sbjct: 717 GAQ------RGPLLARLSE-----------FDVVVTTYPLMVRDNDYYQAQAFEHIVLDE 759
Query: 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLST 238
AQ++KN + + +++ P +L +TGTP++N+L EL +LM FC+P + GT F
Sbjct: 760 AQQIKNAQAKVSQMIKA-LQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAYFNKE 818
Query: 239 FKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLV-ECG-HLMLPPLTEITVLQK 296
F++ + + G EQ L ++ F+LRRTK ++V E + E+ Q+
Sbjct: 819 FRNRIE-----RYGD-SEQVKVLSQRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQR 872
Query: 297 KVYASI---LRKELPKLLALSSRTANH-------QSLQNTASGXXXXXXXXXXXXYNS-- 344
+Y SI + K++ +L A +H L+ N+
Sbjct: 873 NLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAK 932
Query: 345 --------------GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRH 390
G ++L+F+Q T L ++++ L+ + Y +L G R +
Sbjct: 933 LNWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQ------- 985
Query: 391 FSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRA 450
VQ I++ + E D VF+IS +AGG GLNL AADTVI Y+ WNP ++QA RA
Sbjct: 986 --VQ--IDK-FQEG---DTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPAAERQATDRA 1037
Query: 451 HRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV 489
HRIGQ N V L+ E TVEE I + K L+ +++
Sbjct: 1038 HRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSIL 1076
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 318 (117.0 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 95/325 (29%), Positives = 166/325 (51%)
Query: 12 KIIHDNDERDGQTPVDAAEFG-VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTL 70
K+ D++E D + G + +L +Q G+ WL + +LGDEMGLGKT+
Sbjct: 481 KLEDDSEESDAEFDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI 540
Query: 71 QAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFTP--KLEVLRYV 118
Q I+FL+ L +S++ GP +++CP +V WV E + P ++ +L
Sbjct: 541 QIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHET 600
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178
G Y H KE+ + +V+ +L+T+Y + + Q +S+ W Y I+DE
Sbjct: 601 GS-----------YTHKKEKL-IRDVAHC-HGILITSYSYIRLMQDDISRYDWHYVILDE 647
Query: 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLST 238
+++NP++ + ++ F P R++++G+P+QNNL ELW+L F P GTL F+
Sbjct: 648 GHKIRNPNAAVTLACKQ-FRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQ 706
Query: 239 FKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECGHLMLPPLTE--- 290
F + +S+++P + K + L+ ++ ++LRR K V+ L LP E
Sbjct: 707 FSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSD-VKMS-LSLPDKNEQVL 764
Query: 291 ---ITVLQKKVYASIL-RKELPKLL 311
+T Q KVY + + KE+ ++L
Sbjct: 765 FCRLTDEQHKVYQNFVDSKEVYRIL 789
Score = 273 (101.2 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 74/201 (36%), Positives = 107/201 (53%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ G RVLLF+Q Q LDIL+ FL +KY+Y ++DG+ R Q I R Y
Sbjct: 852 HKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASR---------QPLITR-Y 901
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+E FVF+++TR GG+G+NL A+ V+ Y+ DWNP D QA +RA RIGQ V
Sbjct: 902 NE--DTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTV 959
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
L+T T+EE I R K L++ V+ D K+R +++DL + L P
Sbjct: 960 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDP------KQRRFFKSNDLYELFT---LTSP 1010
Query: 522 KAINNEESDDLRLSGLNSMVE 542
A + E+ + +G S V+
Sbjct: 1011 DASQSTETSAI-FAGTGSDVQ 1030
Score = 46 (21.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP 185
+I R + V+ +Q + L DV YD +++QG L Q+ I EA R
Sbjct: 74 HIDRHQIQAVEPSAQALELQGLGVDV----YDQDVLEQGVLQQVD---NAIHEASR---- 122
Query: 186 SSVLYNVLREH 196
+S L +V +E+
Sbjct: 123 ASQLVDVEKEY 133
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 513 (185.6 bits), Expect = 6.6e-48, P = 6.6e-48
Identities = 165/525 (31%), Positives = 259/525 (49%)
Query: 136 KEQSQMSNVSP---LPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNV 192
K+ Q+S+ S + FDVLLT+Y+++ +D L I W I+DE RLKN S L++
Sbjct: 378 KKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSS 437
Query: 193 LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VH 244
L + + R+L+TGTP+QNNL EL+ LMHF FG+L +F FKD +H
Sbjct: 438 LTQ-YSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 496
Query: 245 SSSAP------KRGKIKEQ-----------FTSLKGILSAFMLRRTKQKLVECGHLMLPP 287
AP K+ +K+ +SL+ + R Q L + G +
Sbjct: 497 KMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQIS- 555
Query: 288 LTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHR 347
L I + +KV E + + + A Q L++ G GHR
Sbjct: 556 LNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESC--GKLQLLDKMMVKLKEQGHR 613
Query: 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407
VL++ Q LD+L+D+ +K+ YER+DG + ER Q I+R A +
Sbjct: 614 VLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAER---------QIRIDRF--NAKNS 662
Query: 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467
+ F F++STRAGG+G+NL ADTVI Y+ DWNP D QA+ RAHR+GQ N V+ L+
Sbjct: 663 NKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINR 722
Query: 468 HTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGL-HLF---DPKA 523
T+EE +M+ ++K+ L H VVG + + + + E DD+ I +G LF D +A
Sbjct: 723 GTIEERMMQLTKKKMVLEHLVVGK-LKTQNINQE---ELDDI--IRYGSKELFASEDDEA 776
Query: 524 INNEES--DDLRLSGL--NSMVE-KVIAMRHEQVSGKAGRKFEVNPVALLEESDLLMHES 578
+ + DD + L +VE + +++ E+ +G + F+V ++E++ E+
Sbjct: 777 GKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFL-KAFKVANFEYIDENEAAALEA 835
Query: 579 ----FASATSYPDLDEASYRSWVEKFKEASE-SSSNTIAESGRRR 618
S +S + D ASY W E K+ E + + G+R+
Sbjct: 836 QRVAAESKSSAGNSDRASY--WEELLKDKFELHQAEELNALGKRK 878
Score = 397 (144.8 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 115/329 (34%), Positives = 178/329 (54%)
Query: 6 RLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMG 65
R + + + H + RD Q EF + L P+Q+EGL++L + +V+L DEMG
Sbjct: 243 RTRRSKDVDHKRNPRDFQQFDHTPEF-LKGLLHPYQLEGLNFLRFSWSKQTHVILADEMG 301
Query: 66 LGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRR 125
LGKT+Q+I+ L+ L F + + P LV+ PLS W E A + P++ V+ Y G + R
Sbjct: 302 LGKTIQSIALLASL-FEE-NLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARA 359
Query: 126 NIRRTMYEHVKEQS--------QMSNVSP---LPFDVLLTTYDVVLMDQGFLSQIPWCYT 174
IR + K+Q Q+S+ S + FDVLLT+Y+++ +D L I W
Sbjct: 360 VIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECM 419
Query: 175 IIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQ 234
I+DE RLKN S L++ L + + R+L+TGTP+QNNL EL+ LMHF FG+L +
Sbjct: 420 IVDEGHRLKNKDSKLFSSLTQ-YSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 478
Query: 235 FLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVL 294
F FKD ++ +EQ + L +L+ +LRR K+ +++ +PP E+ +
Sbjct: 479 FQEEFKD-INQ---------EEQISRLHKMLAPHLLRRVKKDVMKD----MPPKKELIL- 523
Query: 295 QKKVYASILRKELPKLLALSSRTANHQSL 323
+V S L+KE K + T N+Q L
Sbjct: 524 --RVDLSSLQKEYYKAIF----TRNYQVL 546
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 314 (115.6 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 93/325 (28%), Positives = 166/325 (51%)
Query: 12 KIIHDNDERDGQTPVDAAEFG-VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTL 70
K+ D++E D + G + +L +Q G+ WL + +LGDEMGLGKT+
Sbjct: 470 KLEDDSEESDAEFDEGFKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTI 529
Query: 71 QAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFTP--KLEVLRYV 118
Q I+FL+ L +S++ GP +++CP +V WV E + P ++ +L
Sbjct: 530 QIIAFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHET 589
Query: 119 GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178
G + H KE+ + +++ +L+T+Y + + Q +S+ W Y I+DE
Sbjct: 590 GS-----------FTHKKEKL-VRDIAHC-HGILITSYSYIRLMQDDISRHDWHYVILDE 636
Query: 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLST 238
+++NP++ + ++ F P R++++G+P+QNNL ELW+L F P GTL F+
Sbjct: 637 GHKIRNPNAAITLACKQ-FRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQ 695
Query: 239 FKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECGHLMLPPLTE--- 290
F + +S+++P + K + L+ ++ ++LRR K V+ L LP E
Sbjct: 696 FSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSD-VKMS-LSLPDKNEQVL 753
Query: 291 ---ITVLQKKVYASIL-RKELPKLL 311
+T Q KVY + + KE+ ++L
Sbjct: 754 FCRLTDEQHKVYQNFIDSKEVYRIL 778
Score = 273 (101.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 70/170 (41%), Positives = 91/170 (53%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ G RVLLF+Q Q LDIL+ FL +KYSY ++DG+ R Q I R Y
Sbjct: 841 HKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASR---------QPLITR-Y 890
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+E FVF+++TR GG+G+NL A+ VI Y+ DWNP D QA +RA RIGQ V
Sbjct: 891 NEDAS--IFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 948
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRS 511
L+T T+EE I R K L++ V+ D R K E L S
Sbjct: 949 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTS 998
Score = 45 (20.9 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR 181
+I R + V+ +Q + L DV YD +++QG L Q+ + I EA R
Sbjct: 73 HIDRHQIQAVEPSAQALELQGLGVDV----YDQDVLEQGVLRQVD---SAIQEASR 121
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 505 (182.8 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 148/425 (34%), Positives = 212/425 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 752 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 811
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 812 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 870
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 871 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 930
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 931 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 989
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 990 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 1038
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1039 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1098
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKAINN 526
+VEE I + A+RK+ L+H VV + + T E DD+ + FG LF D +N
Sbjct: 1099 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI--LKFGTEELFKDDVEGDN 1155
Query: 527 EESDD 531
++ +D
Sbjct: 1156 KDVED 1160
Score = 416 (151.5 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 110/299 (36%), Positives = 154/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL L S GP+LV PLS
Sbjct: 646 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 705
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P V+ Y G++E R IR + K+ +M + F
Sbjct: 706 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKF 765
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 766 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTP 824
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 825 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 874
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 875 LRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 930
Score = 37 (18.1 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 2 KYKERLQVAAKIIHDNDERDGQTPVDAA 29
K K+ V+A + + DER+ ++ D+A
Sbjct: 214 KRKKGSSVSASVSSEEDERE-ESDFDSA 240
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 503 (182.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 825 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 884
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 885 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 943
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 944 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1003
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1004 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1059
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1108
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1225
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1226 DGGGDNKEGED 1236
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 778
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 779 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 838
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 839 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 897
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 898 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 947
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 948 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1003
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1059 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1118
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1119 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1174
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1175 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1232
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1233 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1285
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1286 GEEEEVEREIIKQEESV 1302
Score = 39 (18.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +E + P LL + + +D
Sbjct: 98 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDID 157
Query: 163 QGF 165
F
Sbjct: 158 HVF 160
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 503 (182.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 832 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 891
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 892 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 950
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 951 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1011 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1066
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1115
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1232
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1233 DGGGDNKEGED 1243
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 785
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 786 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 845
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 846 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 904
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 905 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 954
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 955 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1010
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1066 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1125
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1126 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1181
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1239
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1240 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1292
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1293 GEEEEVEREIIKQEESV 1309
Score = 39 (18.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +E + P LL + + +D
Sbjct: 105 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDID 164
Query: 163 QGF 165
F
Sbjct: 165 HVF 167
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 503 (182.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 825 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 884
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 885 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 943
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 944 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1003
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1004 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1059
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1108
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1225
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1226 DGGGDNKEGED 1236
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 778
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 779 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 838
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 839 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 897
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 898 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 947
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 948 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1003
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1059 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1118
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1119 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1174
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1175 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1232
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1233 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1285
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1286 GEEEEVEREIIKQEESV 1302
Score = 39 (18.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +E + P LL + + +D
Sbjct: 98 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDID 157
Query: 163 QGF 165
F
Sbjct: 158 HVF 160
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 503 (182.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 825 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 884
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 885 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 943
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 944 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1003
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1004 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1059
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1060 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1108
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1109 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1168
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1169 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1225
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1226 DGGGDNKEGED 1236
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 778
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 779 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 838
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 839 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 897
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 898 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 947
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 948 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1003
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1059 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1118
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1119 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1174
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1175 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1232
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1233 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1285
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1286 GEEEEVEREIIKQEESV 1302
Score = 39 (18.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +E + P LL + + +D
Sbjct: 98 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDID 157
Query: 163 QGF 165
F
Sbjct: 158 HVF 160
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 503 (182.1 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 853 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 912
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 913 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 971
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 972 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1031
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1032 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1087
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1088 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1136
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1137 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1196
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1197 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1253
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1254 DGGGDNKEGED 1264
Score = 423 (154.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 747 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 806
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 807 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 866
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 867 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 925
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 926 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 975
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 976 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1031
Score = 142 (55.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1087 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1146
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1147 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1202
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1203 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1260
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1261 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1313
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1314 GEEEEVEREIIKQEESV 1330
Score = 39 (18.8 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +E + P LL + + +D
Sbjct: 126 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDID 185
Query: 163 QGF 165
F
Sbjct: 186 HVF 188
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 512 (185.3 bits), Expect = 2.9e-47, P = 2.9e-47
Identities = 164/509 (32%), Positives = 251/509 (49%)
Query: 30 EFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPF 89
+F LK QVEG WL + + LL DEMGLGKT+Q+I+FL YL S GPF
Sbjct: 891 KFQDNLSLKEFQVEGFLWLSYCWYHCRSSLLADEMGLGKTIQSIAFLQYLSQSVGIKGPF 950
Query: 90 LVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPF 149
LV+ PLS W E+ K+T K++ L + G +E R I + ++H + + + V +
Sbjct: 951 LVVAPLSTLGNWHKEILKWT-KMKTLVFYGSQETRGFISKYEFKH--KDTYLFEVLLTTY 1007
Query: 150 DVLLTTYD--------VVLMDQGF------------LSQIPWCYTIIDEAQRLKNPSSVL 189
+ +++ + +++D+G L I ++II L+N L
Sbjct: 1008 ETIMSDHSSFVRVPWRALILDEGHRIKNDKSKVLSKLKSIKTEHSIILTGTPLQNDMKEL 1067
Query: 190 YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTF-----KDAVH 244
+ +L +FL P + Q L E L S L+Q LS + K+ V
Sbjct: 1068 WTML--NFLDPDKF----NSCQEFLDEYSDLKE---ESQVSKLHQLLSPYLLRRMKEDVE 1118
Query: 245 SSSAPKRGK-IKEQFTSLKGILSAFMLRRTKQKLVEC--GHLMLPPLTEITVLQKKVYAS 301
S K I+ + +S + +L R ++ L LP L+ I + +KV
Sbjct: 1119 LSIPIKEETVIQVELSSTQKTYYRAILERNREFLSRGIKQKTNLPKLSNIMIQIRKVCNH 1178
Query: 302 -ILRKELPKLLALSSRTANHQSLQNT---ASGXXXXXXXXXXXXYNSGHRVLLFAQMTQT 357
L + + + A + L +S GH+VL+F+QM ++
Sbjct: 1179 PFLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVES 1238
Query: 358 LDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR 417
L+IL+D+L+ R+Y+YERLDGSI++E R Q++I+R + + G N FVF++STR
Sbjct: 1239 LNILEDYLQYREYTYERLDGSIKSEVR---------QASIDR-FQDKGAN-RFVFLLSTR 1287
Query: 418 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRR 477
AGGVG+NL ADTVI ++ DWNPQ D QA R HRIGQ N+V L+T +T EE +
Sbjct: 1288 AGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFEC 1347
Query: 478 AERKLRLSHNVVGDDVVDREVKERTAVET 506
A +KL L H V+ + D++ T + T
Sbjct: 1348 ATKKLLLDHIVLSTNK-DKKQTNTTPIST 1375
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 503 (182.1 bits), Expect = 3.1e-47, Sum P(2) = 3.1e-47
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 854 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 913
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 914 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 972
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 973 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1032
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1033 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1088
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1089 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1137
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1138 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1197
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1198 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1254
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1255 DGGGDNKEGED 1265
Score = 423 (154.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 748 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 807
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 808 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 867
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 868 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 926
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 927 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 976
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 977 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1032
Score = 142 (55.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1088 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1147
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1148 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1203
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1204 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1261
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1262 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1314
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1315 GEEEEVEREIIKQEESV 1331
Score = 38 (18.4 bits), Expect = 3.1e-47, Sum P(2) = 3.1e-47
Identities = 11/63 (17%), Positives = 30/63 (47%)
Query: 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD 162
SE + +TP + + +G ++++++ + E +++ + P LL + + +D
Sbjct: 125 SEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEDEDDDDSKEPKSSAQLLEDWGMEDID 184
Query: 163 QGF 165
F
Sbjct: 185 HVF 187
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 507 (183.5 bits), Expect = 5.5e-47, P = 5.5e-47
Identities = 153/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 838 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 897
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 898 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 956
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 957 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1016
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L ASG G
Sbjct: 1017 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIK-ASGKLMLLQKMLRKLKEQG 1072
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1073 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAH 1121
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1122 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1181
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1182 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1238
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1239 GENKEEDSSVIHYDNEAIARLL 1260
Score = 414 (150.8 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 732 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 791
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 792 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 851
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 852 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 910
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 911 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 960
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 961 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1016
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 507 (183.5 bits), Expect = 5.5e-47, P = 5.5e-47
Identities = 153/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 840 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 899
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 900 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 958
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 959 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1018
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L ASG G
Sbjct: 1019 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIK-ASGKLMLLQKMLRKLKEQG 1074
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1075 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1123
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1124 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1183
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1184 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1240
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1241 GENKEEDSSVIHYDNEAIARLL 1262
Score = 414 (150.8 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 734 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 793
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 794 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 853
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 854 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 912
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 913 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 962
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 963 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1018
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 507 (183.5 bits), Expect = 5.5e-47, P = 5.5e-47
Identities = 153/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 902 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L ASG G
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIK-ASGKLMLLQKMLRKLKEQG 1076
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1125
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1126 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1185
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1186 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1242
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1243 GENKEEDSSVIHYDNEAIARLL 1264
Score = 414 (150.8 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 795
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 796 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 855
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 856 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 914
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 915 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 964
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 965 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1020
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 505 (182.8 bits), Expect = 6.7e-47, P = 6.7e-47
Identities = 148/425 (34%), Positives = 212/425 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 722 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 781
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 782 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 840
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 841 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 900
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 901 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 959
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 960 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 1008
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1009 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1068
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKAINN 526
+VEE I + A+RK+ L+H VV + + T E DD+ + FG LF D +N
Sbjct: 1069 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI--LKFGTEELFKDDVEGDN 1125
Query: 527 EESDD 531
++ +D
Sbjct: 1126 KDVED 1130
Score = 416 (151.5 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 110/299 (36%), Positives = 154/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL L S GP+LV PLS
Sbjct: 616 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 675
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P V+ Y G++E R IR + K+ +M + F
Sbjct: 676 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKF 735
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 736 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTP 794
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 795 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 844
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 845 LRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 900
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 500 (181.1 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 189 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 248
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 249 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 307
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 308 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 367
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 368 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 426
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 427 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 475
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 476 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 535
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
+VEE I + A+RK+ L+H VV + + T E DD+
Sbjct: 536 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI 575
Score = 419 (152.6 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 120/342 (35%), Positives = 168/342 (49%)
Query: 4 KERLQVAAKIIHDNDERDGQTP-VD-AAEF--------GVTAELKPHQVEGLSWLIRRYL 53
K L+ K+ D E+ TP VD +F L P+Q+EGL+WL +
Sbjct: 40 KRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWA 99
Query: 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLE 113
G + +L DEMGLGKT+Q I FL L S GP+LV PLS W E + P
Sbjct: 100 QGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFY 159
Query: 114 VLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFL 166
V+ Y G++E R IR + K+ +M + F VLLT+Y+++ +DQ L
Sbjct: 160 VVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAIL 219
Query: 167 SQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMP 226
I W ++DEA RLKN S + VL + + +LL+TGTP+QNNL EL+ L++F P
Sbjct: 220 GSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTP 278
Query: 227 SVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVEC--GHLM 284
F L FL F D K +IK+ L +L MLRR K + +
Sbjct: 279 ERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHMLRRLKADVFKNMPAKTE 328
Query: 285 LPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 329 LIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 367
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 327 (120.2 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 93/297 (31%), Positives = 154/297 (51%)
Query: 33 VTAELKPHQVEGLSWL--IRRYLLGVNVLLGDEMGLGKTLQAISFLS---YLK---FSQM 84
+ AEL+P+Q EG++WL + RY L + +L D+MGLGKTLQ I ++ +++ F++
Sbjct: 1314 IKAELRPYQQEGVNWLAFLNRYNL--HGILCDDMGLGKTLQTICIVASDHHMRAEDFAKT 1371
Query: 85 S-PG----PFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQS 139
P P L++CP S++ W E+ ++ P L + YVG +R + Q
Sbjct: 1372 QRPESRKVPSLIICPPSLSGHWQQEVKQYAPFLNCVAYVGPPAERSKL----------QG 1421
Query: 140 QMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
+++ D+++T+YD+ D L I W Y ++DE +KNP + + ++
Sbjct: 1422 SLADA-----DIVVTSYDICRNDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKR-INS 1475
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-- 257
RL+++GTPIQNN+ ELW+L F MP GT FL F + +S K K +E
Sbjct: 1476 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSKEQEAGA 1535
Query: 258 --FTSLKGILSAFMLRRTKQKLVECGHLMLPP------LTEITVLQKKVYASILRKE 306
+L + F+LRR K++++ LPP + + LQKK++ +KE
Sbjct: 1536 LAIEALHKQVLPFLLRRLKEEVLND----LPPKIIQNYYCDPSELQKKLFEDFTKKE 1588
Score = 253 (94.1 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 74/203 (36%), Positives = 104/203 (51%)
Query: 342 YNSGHRVLLFAQMTQTLDILQ-DFLE--LRKYSYERLDGSIRAEERFAAIRHFSVQSAIE 398
Y S HR L+F QM + LDI+Q + L+ L + RLDG++ A R Q +
Sbjct: 1682 YVSPHRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRR---------QDIVN 1732
Query: 399 RLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458
R S+ + V +++T GG+GLNL ADTVIF E DWNPQ D QA+ RAHRIGQ
Sbjct: 1733 RFNSDPSYD---VLLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKV 1789
Query: 459 VLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGL-- 516
V L+T T+EE I+ K+ V VV+++ ++TD L + F L
Sbjct: 1790 VNVYRLITRGTLEEKILNLQRFKID-----VASTVVNQQNAGLNTMDTDQLLDL-FNLGE 1843
Query: 517 ---HLFDPKAINNEESDDLRLSG 536
+ P I +E D + + G
Sbjct: 1844 TAENAEKPTEIGGKEVDMVDIDG 1866
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 504 (182.5 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 152/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 798 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 857
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 858 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 916
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 917 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 976
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L + SG G
Sbjct: 977 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIKS-SGKLLLLQKMLRKLKEQG 1032
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1033 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1081
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1082 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1141
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1142 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1198
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1199 GENKEEDSSVIHYDNEAIARLL 1220
Score = 414 (150.8 bits), Expect = 2.8e-35, P = 2.8e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 692 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 751
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 752 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 811
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 812 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 870
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 871 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 920
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 921 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 976
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 504 (182.5 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 152/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 842 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 901
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 902 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 960
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L + SG G
Sbjct: 1021 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIKS-SGKLMLLQKMLRKLKEQG 1076
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1077 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1125
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1126 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1185
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1186 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1242
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1243 GENKEEDSSVIHYDNEAIARLL 1264
Score = 414 (150.8 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 795
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 796 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 855
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 856 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 914
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 915 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 964
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 965 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1020
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 504 (182.5 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 152/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 893 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 952
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 953 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 1011
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 1012 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1071
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L + SG G
Sbjct: 1072 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIKS-SGKLLLLQKMLRKLKEQG 1127
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1128 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1176
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1177 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1236
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1237 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1293
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1294 GENKEEDSSVIHYDNEAIARLL 1315
Score = 414 (150.8 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 787 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 846
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 847 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 906
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 907 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 965
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 966 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 1015
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 1016 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1071
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 504 (182.5 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 152/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 893 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 952
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 953 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 1011
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 1012 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1071
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L + SG G
Sbjct: 1072 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIKS-SGKLLLLQKMLRKLKEQG 1127
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1128 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1176
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1177 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1236
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1237 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1293
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1294 GENKEEDSSVIHYDNEAIARLL 1315
Score = 414 (150.8 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 787 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 846
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 847 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 906
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 907 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 965
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 966 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 1015
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 1016 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1071
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 504 (182.5 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 152/442 (34%), Positives = 219/442 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 901 KKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG 960
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 961 -YKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 1019
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E PKL S +L + SG G
Sbjct: 1080 IMMDLKKCCNHPYLFPVAAMESPKL---PSGAYEGGALIKS-SGKLMLLQKMLRKLKEQG 1135
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFL+ Y YER+DG I A+R Q AI+R A
Sbjct: 1136 HRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITG-----ALR----QEAIDRF--NAP 1184
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI ++ DWNP D QA RAHRIGQ N V+ V
Sbjct: 1185 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1244
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF-DPKA 523
T +VEE I + A+RK+ L+H VV + + + E DD+ + FG LF D
Sbjct: 1245 TRASVEERITQVAKRKMMLTHLVVRPGLGSK-AGSMSKQELDDI--LKFGTEELFKDENE 1301
Query: 524 INNEESDDLRLSGLNSMVEKVI 545
N+E D + N + +++
Sbjct: 1302 GENKEEDSSVIHYDNEAIARLL 1323
Score = 414 (150.8 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 110/299 (36%), Positives = 155/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L +Q+EGL+WL + G + +L DEMGLGKT+Q I FL L + GPFLV PLS
Sbjct: 795 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 854
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + PK V+ Y G+++ R IR + K+ +M + + F
Sbjct: 855 TIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKF 914
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 915 HVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTGTP 973
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 974 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 1023
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+SR +Q SL N
Sbjct: 1024 LRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE---ALNSRGGGNQVSLLN 1079
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 503 (182.1 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 153/431 (35%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 738 KKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNS 797
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 798 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 856
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 857 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 916
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
I + KK Y + E P +L S N SL + SG + G
Sbjct: 917 IMMDLKKCCNHPYLFPVAAVEAP-VLPNGSYDGN--SLVKS-SGKLMLLQKMLKKLRDGG 972
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 973 HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAP 1021
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1022 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1081
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LF----D 520
T +VEE I + A+RK+ L+H VV + + T E DD+ + FG LF +
Sbjct: 1082 TRASVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI--LKFGTEELFKDDVE 1138
Query: 521 PKAINNEESDD 531
+N++ DD
Sbjct: 1139 GGVSDNKDVDD 1149
Score = 418 (152.2 bits), Expect = 8.7e-36, P = 8.7e-36
Identities = 111/300 (37%), Positives = 156/300 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQMSPGPFLVLCPL 95
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL S K S GP+LV PL
Sbjct: 631 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPL 690
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLP 148
S W E + P V+ Y G++E R IR + K+ +M + +
Sbjct: 691 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIK 750
Query: 149 FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGT
Sbjct: 751 FHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGT 809
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268
P+QNNL EL+ L++F P F L FL F D K +IK+ L +L
Sbjct: 810 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPH 859
Query: 269 MLRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
MLRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 860 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 916
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 327 (120.2 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 96/270 (35%), Positives = 142/270 (52%)
Query: 29 AEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGP 88
A F +L+ +Q+ G++WL Y L + +L DEMGLGKT Q I+F S L ++ GP
Sbjct: 379 ASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMDKNIN-GP 437
Query: 89 FLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLP 148
LV+ P S + W+ E AKF PKL++ Y G + +R IR E + SN
Sbjct: 438 HLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIR----ERIN-----SNKDS-- 486
Query: 149 FDVLLTTYDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLM 205
++V+LTTY + D+ FL + + DE LKN +S Y L R+L+
Sbjct: 487 YNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMS-IPADFRVLL 545
Query: 206 TGTPIQNNLSELWALMHFCMPSVF--GTLN-QFLSTFKDAVHSSSAPKRGKIKEQFTS-L 261
TGTP+QNNL EL +L+ F +P VF G + + T K + S +R + EQ S
Sbjct: 546 TGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDF--ERALLSEQRVSRA 603
Query: 262 KGILSAFMLRRTKQKLVECGHLMLPPLTEI 291
K +++ F+LRR K ++++ LP T I
Sbjct: 604 KMMMAPFVLRRKKSQVLDA----LPKKTRI 629
Score = 243 (90.6 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 60/155 (38%), Positives = 87/155 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403
+G RV+LF+Q TQ LDILQ ++ + R DGS + + R Q I++ Y++
Sbjct: 776 NGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFR---------QDLIDQFYAD 826
Query: 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463
N VF++ST+AGG G+NL A+ VI Y+ +NP D QA RAHR+GQ V
Sbjct: 827 ESIN---VFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYK 883
Query: 464 LVTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDRE 497
V + T+EE I R A K+ L + G+ + V+ E
Sbjct: 884 FVVKDTIEEHIQRLANAKIALDATLSGNAETVEAE 918
Score = 38 (18.4 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 96 SVTDGWVSEMAKFTPKLEVLRYV 118
S D W S + K EVL+Y+
Sbjct: 223 SNADRWASRIDTAALKEEVLKYM 245
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 302 (111.4 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 93/335 (27%), Positives = 169/335 (50%)
Query: 1 MKYKERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLL 60
+K KER VA ++ D + + + F + +L +Q G+ WL + +L
Sbjct: 469 LKDKER-SVAEEL-SDESDTEFEEGFKVPGF-LFKKLFKYQQTGVRWLWELHCQQAGGIL 525
Query: 61 GDEMGLGKTLQAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFTP 110
GDEMGLGKT+Q I+FL+ L +S++ GP +++CP +V WV E + P
Sbjct: 526 GDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWP 585
Query: 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQ 168
++ +L G ++ VK ++++ +L+T+Y + + Q +
Sbjct: 586 PFRVAILHETGSYTNKK---------VKLIREIASCH----GILITSYSYIRLMQDNIHS 632
Query: 169 IPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSV 228
W Y I+DE +++NP++ + ++ F P R++++G+P+QNNL ELW+L F P
Sbjct: 633 YDWHYVILDEGHKIRNPNAAVTLACKQ-FRTPHRIILSGSPMQNNLKELWSLFDFVFPGK 691
Query: 229 FGTLNQFLSTFKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECGHL 283
GTL F+ F + +S+++P + K + L+ ++ ++LRR K V+ L
Sbjct: 692 LGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKAD-VKMS-L 749
Query: 284 MLPPLTE------ITVLQKKVYASIL-RKELPKLL 311
LP E +T Q++VY + + KE+ ++L
Sbjct: 750 SLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQIL 784
Score = 276 (102.2 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 70/170 (41%), Positives = 88/170 (51%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ GHRVL F Q Q L IL+ FL R YSY R+DG+ R Q I R Y
Sbjct: 848 HKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASR---------QPLITR-Y 897
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
+E F+F+++TR GG+G+NL AD VI Y+ DWNP D QA +RA RIGQ V
Sbjct: 898 NE--DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 955
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRS 511
L+T T+EE I R K L++ V+ D R K E L S
Sbjct: 956 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSS 1005
Score = 52 (23.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR 181
+I R + V +Q + + L DV YD +++QG + Q+ I+EA R
Sbjct: 77 HINRQQIQSVSHSAQAAELKGLGVDV----YDQEVLEQGVIQQVD---NAINEANR 125
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 503 (182.1 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 832 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 891
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 892 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 950
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 951 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1011 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1066
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1115
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1232
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1233 DGGGDNKEGED 1243
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 785
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 786 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 845
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 846 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 904
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 905 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 954
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 955 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1010
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1066 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1125
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1126 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1181
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1239
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1240 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1292
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1293 GEEEEVEREIIKQEESV 1309
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 503 (182.1 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 832 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 891
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 892 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 950
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 951 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1011 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1066
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1067 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1115
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1116 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1175
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1176 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1232
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1233 DGGGDNKEGED 1243
Score = 423 (154.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 785
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 786 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 845
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 846 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 904
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 905 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 954
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 955 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1010
Score = 142 (55.0 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1066 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1125
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1126 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1181
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1239
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1240 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1292
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1293 GEEEEVEREIIKQEESV 1309
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 503 (182.1 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 150/431 (34%), Positives = 214/431 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ S+M + + F VLLT+Y+++ +D L I W I+DEA RLKN S + VL
Sbjct: 852 KKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG 911
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ L +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 912 YSLQ-HKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDML 970
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ ++L R + L G L
Sbjct: 971 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1030
Query: 291 ITVLQKKV----YA-SILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSG 345
+ + KK Y + E PK+ + + +L ASG G
Sbjct: 1031 VVMDLKKCCNHPYLFPVAAMEAPKM---PNGMYDGSALIR-ASGKLLLLQKMLKNLKEGG 1086
Query: 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405
HRVL+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A
Sbjct: 1087 HRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR---------QEAIDRF--NAP 1135
Query: 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
G F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ V
Sbjct: 1136 GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1195
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH-LFDPKAI 524
T +VEE I + A++K+ L+H VV + + + E DD+ + FG LF +A
Sbjct: 1196 TRASVEERITQVAKKKMMLTHLVVRPGLGSK-TGSMSKQELDDI--LKFGTEELFKDEAT 1252
Query: 525 N----NEESDD 531
+ N+E +D
Sbjct: 1253 DGGGDNKEGED 1263
Score = 423 (154.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 112/299 (37%), Positives = 156/299 (52%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q FL L S GPFLV PLS
Sbjct: 746 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 805
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P + V+ YVG+++ R IR + K+ S+M + + F
Sbjct: 806 TIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKF 865
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +D L I W I+DEA RLKN S + VL + L +LL+TGTP
Sbjct: 866 HVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQ-HKLLLTGTP 924
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 925 LQNNLEELFHLLNFLTPERFHNLEGFLEEFADIA------KEDQIKK----LHDMLGPHM 974
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL++R +Q SL N
Sbjct: 975 LRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE---ALNARGGGNQVSLLN 1030
Score = 142 (55.0 bits), Expect = 3.3e-46, Sum P(2) = 3.3e-46
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE---RLY 401
GHRVL+F+QMT+ LD+L+DFLE Y YER+DG I R AI F+ A + L
Sbjct: 1086 GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLS 1145
Query: 402 SEAGG---N----DAFVFMIS-----------TRAGGVGLNLVAADTVIFYEQDWNPQVD 443
+ AGG N D + S +RA +G N V+ Y V+
Sbjct: 1146 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN----KKVMIYRFVTRASVE 1201
Query: 444 KQALQRAHRIGQMNHVL-------SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDR 496
++ Q A + + H++ +++ +++++ E + G D ++
Sbjct: 1202 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGD--NK 1259
Query: 497 EVKERTAVETDDLRSIIFGLHLFDPKAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKA 556
E ++ + + DD ++I L D N +E++D L G+N + ++ +
Sbjct: 1260 EGEDSSVIHYDD-KAIE---RLLDR---NQDETEDTELQGMNEYLSSFKVAQYVVREEEM 1312
Query: 557 GRKFEVNPVALLEESDL 573
G + EV + +E +
Sbjct: 1313 GEEEEVEREIIKQEESV 1329
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 500 (181.1 bits), Expect = 2.4e-46, P = 2.4e-46
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 738 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 797
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 798 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 856
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 857 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 916
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 917 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 975
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 976 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 1024
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1025 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1084
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
+VEE I + A+RK+ L+H VV + + T E DD+
Sbjct: 1085 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI 1124
Score = 416 (151.5 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 110/299 (36%), Positives = 154/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL L S GP+LV PLS
Sbjct: 632 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 691
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P V+ Y G++E R IR + K+ +M + F
Sbjct: 692 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKF 751
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 752 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTP 810
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 811 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 860
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 861 LRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 916
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 500 (181.1 bits), Expect = 2.6e-46, P = 2.6e-46
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 669 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 728
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 729 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 787
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 788 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 847
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 848 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 906
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 907 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 955
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 956 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1015
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
+VEE I + A+RK+ L+H VV + + T E DD+
Sbjct: 1016 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI 1055
Score = 416 (151.5 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 110/299 (36%), Positives = 154/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL L S GP+LV PLS
Sbjct: 563 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 622
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P V+ Y G++E R IR + K+ +M + F
Sbjct: 623 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKF 682
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 683 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTP 741
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 742 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 791
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 792 LRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 847
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 500 (181.1 bits), Expect = 2.9e-46, P = 2.9e-46
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 806 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 865
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 866 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 924
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 985 IMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 1043
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 1092
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1093 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1152
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
+VEE I + A+RK+ L+H VV + + T E DD+
Sbjct: 1153 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI 1192
Score = 419 (152.6 bits), Expect = 7.7e-36, P = 7.7e-36
Identities = 120/342 (35%), Positives = 168/342 (49%)
Query: 4 KERLQVAAKIIHDNDERDGQTP-VD-AAEF--------GVTAELKPHQVEGLSWLIRRYL 53
K L+ K+ D E+ TP VD +F L P+Q+EGL+WL +
Sbjct: 657 KRLLKKGKKLRDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWA 716
Query: 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLE 113
G + +L DEMGLGKT+Q I FL L S GP+LV PLS W E + P
Sbjct: 717 QGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFY 776
Query: 114 VLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFL 166
V+ Y G++E R IR + K+ +M + F VLLT+Y+++ +DQ L
Sbjct: 777 VVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAIL 836
Query: 167 SQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMP 226
I W ++DEA RLKN S + VL + + +LL+TGTP+QNNL EL+ L++F P
Sbjct: 837 GSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTP 895
Query: 227 SVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVEC--GHLM 284
F L FL F D K +IK+ L +L MLRR K + +
Sbjct: 896 ERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHMLRRLKADVFKNMPAKTE 945
Query: 285 LPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 946 LIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 984
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 330 (121.2 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 90/311 (28%), Positives = 154/311 (49%)
Query: 4 KERLQVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDE 63
+E + +II D+ E D + F + L +QV + WL + ++GDE
Sbjct: 765 EEEKEAEEEIIGDDYEIDENFKIP---FDIYKNLFEYQVTCVRWLYELHCQETGGIVGDE 821
Query: 64 MGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEV-LRYVGERE 122
MGLGKT+Q +SFL+ L +S+ GP L++ P ++ W+ E K+ P V L +
Sbjct: 822 MGLGKTVQIVSFLASLHYSRRLGGPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSG 881
Query: 123 QRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRL 182
N + VK+ ++ ++ LLTT+D + ++Q L + W Y I+DE ++
Sbjct: 882 GGGNDGSDKEDIVKKIAEKGHI-------LLTTFDSIRINQEILLKYHWEYVILDEGHKI 934
Query: 183 KNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA 242
+NP + + + + P R++++G+PIQN L+ELW+L F P GTL F S F
Sbjct: 935 RNPDAEI-TLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSLP 993
Query: 243 VHSSSAPKRGKIKEQFT-----SLKGILSAFMLRRTKQKLVEC-----GHLMLPPLTEIT 292
+ I+ Q +L+ ++S +MLRR K +++ +++ PLT
Sbjct: 994 ISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTPF- 1052
Query: 293 VLQKKVYASIL 303
Q+K+Y L
Sbjct: 1053 --QEKLYLEFL 1061
Score = 244 (91.0 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 53/161 (32%), Positives = 89/161 (55%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFL-ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERL 400
+ G +VLLF Q Q LDI++ ++ + +++Y R+DG+ +R + F++ ++
Sbjct: 1126 FKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNIDPSL--- 1182
Query: 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460
F+F+++T+ GG+GLNL A+ VI ++ DWNP D QA +R +RIGQ V
Sbjct: 1183 ---------FIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVT 1233
Query: 461 SINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKER 501
L+T T+EE I R K L++ ++ D R K +
Sbjct: 1234 IYRLITLGTIEEKIYHRQIYKQFLTNKILKDPRQKRFFKSK 1274
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 309 (113.8 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 95/327 (29%), Positives = 160/327 (48%)
Query: 6 RLQVAAKIIHDNDERDGQTPVDAAEFGVTA----ELKPHQVEGLSWLIRRYLLGVNVLLG 61
RLQ K+ ++D + D F V +L +Q G+ WL + +LG
Sbjct: 467 RLQDKEKLKLEDDSEESDAEFDEG-FKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILG 525
Query: 62 DEMGLGKTLQAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFTP- 110
DEMGLGKT+Q I+FL+ L +S++ GP L++CP +V WV E + P
Sbjct: 526 DEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPP 585
Query: 111 -KLEVLRYVGEREQRRN--IRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLS 167
++ +L G R+ +R ++ H VL+T+Y + + Q +S
Sbjct: 586 FRVAILHETGSCAHRKERLVRDIVHCH---------------GVLITSYSYIRLMQDDIS 630
Query: 168 QIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPS 227
+ W Y I+DE +++NP++ + ++ F P R++++G+P+QNNL ELW+L F P
Sbjct: 631 RHDWHYVILDEGHKIRNPNAAVTLACKQ-FRTPHRIILSGSPMQNNLRELWSLFDFTFPG 689
Query: 228 VFGTLNQFLSTFKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECGH 282
GTL F+ F + +S+++P + K + L+ ++ ++LRR K V+
Sbjct: 690 KLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSD-VKMS- 747
Query: 283 LMLPPLTE------ITVLQKKVYASIL 303
L LP E +T Q KVY + +
Sbjct: 748 LSLPDKNEQVLFCRLTDEQHKVYQNFI 774
Score = 265 (98.3 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 71/201 (35%), Positives = 104/201 (51%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ G RVLLF+Q Q L IL+ FL KYSY ++DG+ R I ++ ++I
Sbjct: 846 HKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSI---- 901
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
FVF+++TR GG+G+NL A+ VI Y+ DWNP D QA +RA RIGQ V
Sbjct: 902 --------FVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 953
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
L+T T+EE I R K L++ V+ D K+R +++DL + L P
Sbjct: 954 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDP------KQRRFFKSNDLYELFT---LTSP 1004
Query: 522 KAINNEESDDLRLSGLNSMVE 542
A E+ + +G S ++
Sbjct: 1005 DASQGTETSAI-FAGTGSNIQ 1024
Score = 40 (19.1 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRL 182
+I R V+ +Q + L DV YD ++++G L Q+ + + EA R+
Sbjct: 74 HIDRHQIPAVEPSAQALELQGLGVDV----YDQAVLEEGVLQQVD---SAMHEASRV 123
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 300 (110.7 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 77/192 (40%), Positives = 108/192 (56%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHR+LLF+Q Q LDIL+D+ E + +Y R DG+ ER QSAI+ A
Sbjct: 887 GHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMER---------QSAIDSF--NA 935
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
++ F++STRAGGVG+NL +ADTVI + D+NP D QA+ RAHR GQ VL L
Sbjct: 936 PNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVL 995
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREVKERTAVETDDLRSIIFGLHLFDPKA 523
T +VEE I++ A++KL L H +V D K+ ++ R++ F +P
Sbjct: 996 TTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNSEKDLESILRHGARAL-FEEAGDEPSI 1054
Query: 524 INNEESDDLRLS 535
NE S +L +S
Sbjct: 1055 KYNEYSVELLIS 1066
Score = 274 (101.5 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 71/190 (37%), Positives = 102/190 (53%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q++GL+WL R+ +L DEMGLGKT+Q ISF+S L F + P LV+ P +
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVL-FYRHKCFPVLVIVPHA 614
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTY 156
W E+ K+ P L++ VG + R +R Y + Q +VS VL+ +
Sbjct: 615 TVANWERELKKWAPFLQINVLVGSEKNRSLVRD--YRLIN-QKDPKHVST---HVLVISA 668
Query: 157 DVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216
V + L + W I+DE QRLKN S L+ L +LL+TGTP+QNN+ E
Sbjct: 669 SNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSS-VKSDFKLLLTGTPLQNNVRE 727
Query: 217 LWALMHFCMP 226
L+ L+ F P
Sbjct: 728 LFNLLQFLNP 737
Score = 167 (63.8 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 64/185 (34%), Positives = 93/185 (50%)
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
VL+ + V + L + W I+DE QRLKN S L+ L +LL+TGTP+
Sbjct: 663 VLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSS-VKSDFKLLLTGTPL 721
Query: 211 QNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI--KEQFTSLKGILSAF 268
QNN+ EL+ L+ QFL+ K ++++ KR I E+ T L IL F
Sbjct: 722 QNNVRELFNLL------------QFLNPMK--INAAELEKRYSIIDTEKVTELHQILKPF 767
Query: 269 MLRRTKQKLVECGHL---MLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSL-- 323
LRR K ++++ ++ PL+ +T +QK +Y SIL K L LL + AN S
Sbjct: 768 FLRRVKSEVLDNFPTKVEVIIPLS-MTPVQKGLYKSILSKNL-SLLRNITGYANTSSSGG 825
Query: 324 QNTAS 328
Q T S
Sbjct: 826 QRTTS 830
Score = 54 (24.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 23/99 (23%), Positives = 49/99 (49%)
Query: 442 VDKQALQRAHRIGQMNHVLSINLVTEHTVE---EVIMRRAERKL--------RLSHNVVG 490
V+++ +Q A + ++H++ +L H E E I+R R L + +N
Sbjct: 1001 VEEKIIQNAQKKLVLDHLIVESLDQNHNSEKDLESILRHGARALFEEAGDEPSIKYNEYS 1060
Query: 491 DDVV--DREVKERTAVETDDLRSIIFGL-HLFDPKAINN 526
+++ + E +E T+ + D++S FG ++D K I++
Sbjct: 1061 VELLISEAEKQEDTSTDESDIKSNKFGFFRVWDNKHISS 1099
Score = 40 (19.1 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 497 EVKERTAVETDDLRSII 513
EVKE V+ +D+ S+I
Sbjct: 1103 EVKENVLVDEEDVWSVI 1119
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 499 (180.7 bits), Expect = 3.7e-46, P = 3.7e-46
Identities = 141/401 (35%), Positives = 200/401 (49%)
Query: 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
K+ +M + F VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL
Sbjct: 804 KKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS 863
Query: 196 HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA--------VHSSS 247
+ + +LL+TGTP+QNNL EL+ L++F P F L FL F D +H
Sbjct: 864 -YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLL 922
Query: 248 AP---KRGK--------------IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE 290
P +R K ++ + + ++ F+L R + L G L
Sbjct: 923 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 982
Query: 291 ITVLQKKV--YASILRKELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRV 348
I + KK + + + L + + + SL + SG + GHRV
Sbjct: 983 IMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGSSLVKS-SGKLMLLQKMLKKLRDEGHRV 1041
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QMT+ LD+L+DFLE Y YER+DG I R Q AI+R A G
Sbjct: 1042 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR---------QEAIDRF--NAPGAQ 1090
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
F F++STRAGG+G+NL ADTVI Y+ DWNP D QA RAHRIGQ V+ VT
Sbjct: 1091 QFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRA 1150
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDL 509
+VEE I + A+RK+ L+H VV + + T E DD+
Sbjct: 1151 SVEERITQVAKRKMMLTHLVVRPGLGSKS-GSMTKQELDDI 1190
Score = 416 (151.5 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 110/299 (36%), Positives = 154/299 (51%)
Query: 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96
L P+Q+EGL+WL + G + +L DEMGLGKT+Q I FL L S GP+LV PLS
Sbjct: 698 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 757
Query: 97 VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHV-------KEQSQMSNVSPLPF 149
W E + P V+ Y G++E R IR + K+ +M + F
Sbjct: 758 TIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKF 817
Query: 150 DVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209
VLLT+Y+++ +DQ L I W ++DEA RLKN S + VL + + +LL+TGTP
Sbjct: 818 HVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNS-YKIDYKLLLTGTP 876
Query: 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269
+QNNL EL+ L++F P F L FL F D K +IK+ L +L M
Sbjct: 877 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADI------SKEDQIKK----LHDLLGPHM 926
Query: 270 LRRTKQKLVEC--GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ-SLQN 325
LRR K + + L E++ +QKK Y IL + AL+S+ +Q SL N
Sbjct: 927 LRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE---ALNSKGGGNQVSLLN 982
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 310 (114.2 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 95/299 (31%), Positives = 150/299 (50%)
Query: 33 VTAELKPHQVEGLSWL--IRRYLLGVNVLLGDEMGLGKTLQAISFLS---YLKFSQMSPG 87
+ A L+ +Q +G++WL + +Y L + +L D+MGLGKTLQ I ++ YL+
Sbjct: 1268 IKATLRKYQQDGVNWLAFLNKYHL--HGILCDDMGLGKTLQTICIIASDQYLRKEDYEKT 1325
Query: 88 --------PFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQS 139
P L++CP S+T W +E ++ P L+V+ Y G R +R
Sbjct: 1326 RSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLR----------P 1375
Query: 140 QMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
Q+S+ D+++T+YDV D L++ + Y ++DE +KN S L ++E
Sbjct: 1376 QLSDA-----DIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKE-ITA 1429
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ-- 257
RL++TGTPIQNN+ ELW+L F MP GT F F + +S K KEQ
Sbjct: 1430 NHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSS-KEQEA 1488
Query: 258 -FTSLKGI---LSAFMLRRTKQKLVECGHLMLPP------LTEITVLQKKVYASILRKE 306
+L+ + + FMLRR K+ ++ LPP E+ LQK++Y +K+
Sbjct: 1489 GVLALEALHKQVLPFMLRRLKEDVLSD----LPPKIIQDYYCELGDLQKQLYMDFTKKQ 1543
Score = 265 (98.3 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 73/218 (33%), Positives = 123/218 (56%)
Query: 344 SGHRVLLFAQMTQTLDILQDFLELRKY----SYERLDGSIRAEERFAAIRHFSVQSAIER 399
S HR L+F Q+ LD++++ L +KY +Y RLDGSI +R +R F+ +I+
Sbjct: 1645 SQHRALIFCQLKDMLDMVENDL-FKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDC 1703
Query: 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHV 459
L +++T+ GG+GLNL ADTVIF E DWNP D QA+ RAHRIGQ V
Sbjct: 1704 L------------LLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVV 1751
Query: 460 LSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLF 519
++T+ T+EE IM +K +++ + VV+++ +++T L L LF
Sbjct: 1752 NVYRIITKGTLEEKIM--GLQKFKMN---IASTVVNQQNSGLASMDTHQL------LDLF 1800
Query: 520 DPKAINNEESDDLRLSGLNSMVEKVIAMRHEQ-VSGKA 556
DP + ++++++ + +G + + + + +E ++GKA
Sbjct: 1801 DPDNVTSQDNEE-KNNGDSQAAKGMEDIANETGLTGKA 1837
Score = 39 (18.8 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 244 HSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECG 281
H A + +K+ L I++A L + L ECG
Sbjct: 1585 HPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECG 1622
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 484 (175.4 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 110/302 (36%), Positives = 178/302 (58%)
Query: 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92
+ A+LKP+Q++G++W++ Y G+N +L DEMGLGKT+Q+I+ L++L + GPFL++
Sbjct: 1158 LNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIWGPFLIV 1217
Query: 93 CPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVL 152
P S W +E AKF P +V+ Y G ++QR IR+ Y + K+ ++ PF VL
Sbjct: 1218 TPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRK--YWNPKKLYHRNS----PFHVL 1271
Query: 153 LTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+T+Y+V++ D+ + ++ W Y ++DEA +K+ +S + L F RLL+TGTPIQN
Sbjct: 1272 ITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMS-FNCRNRLLLTGTPIQN 1330
Query: 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRR 272
+++ELWAL+HF MP+ F + ++F F + + + + G + Q L IL FMLRR
Sbjct: 1331 SMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRR 1390
Query: 273 TKQKLVECGHLMLPPLTEITVL------QKKVYASILRK-ELPKLL--ALSSRTANHQSL 323
K+ + +P TE+ V QKK+Y SI + +LL A S + ++L
Sbjct: 1391 IKRDVEN----EMPSKTEVEVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGSMKAL 1446
Query: 324 QN 325
N
Sbjct: 1447 MN 1448
Score = 336 (123.3 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 84/258 (32%), Positives = 134/258 (51%)
Query: 256 EQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSS 315
++ + +K ++ + T ++L E +LPP + VL L L +L +S
Sbjct: 1694 KEISLVKLTMNGLITNETTKELSESLPTVLPPSSNQIVLDNLKENGGLMGGLNRLFGSTS 1753
Query: 316 RTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERL 375
S SG GHRVL+++Q T+ ++IL+DF+ RKY Y RL
Sbjct: 1754 IWMPSFSKSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRL 1813
Query: 376 DGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435
DGS + ++R + F +I F F++STRA G+G+NL +ADTVIFY+
Sbjct: 1814 DGSSKLDDRRDMVDDFQSDPSI------------FAFLLSTRACGIGINLTSADTVIFYD 1861
Query: 436 QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVD 495
DWNP VD+QA RAHR+GQ V L+T++T+EE I++RA++K ++ V+ +
Sbjct: 1862 SDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFE 1921
Query: 496 REVKERTAVETDDLRSII 513
+E V ++ S +
Sbjct: 1922 SNPEELDQVGENEAISFL 1939
Score = 46 (21.3 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 533 RLSGLNSMVEKVI--AMRHEQVSGK--AGRKFEVNPVAL 567
RL N++ EK++ A + Q+ AG KFE NP L
Sbjct: 1889 RLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEEL 1927
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 293 (108.2 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 70/192 (36%), Positives = 104/192 (54%)
Query: 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95
E+ +Q +GL+WL ++ N +L DEMGLGKT+Q I L+ L PFL++ P
Sbjct: 605 EIMDYQRDGLNWLYFKWFKQQNAILADEMGLGKTIQVIGLLATL-VQDHKCWPFLIVVPN 663
Query: 96 SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSP-LPFDVLLT 154
S W E+ + P L + Y G ++ R M +E P L V++T
Sbjct: 664 STCPNWRKELKTWVPSLRAVTYYGS-----SLARKM---AQEHEMFIRGDPDLRCHVVIT 715
Query: 155 TYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212
+Y+ ++ D + LS+IPW I+DE QRLK+ S +Y L + P ++LMTGTP+QN
Sbjct: 716 SYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSK-MKFPFKVLMTGTPLQN 774
Query: 213 NLSELWALMHFC 224
N EL+ L+ FC
Sbjct: 775 NTKELFNLLQFC 786
Score = 278 (102.9 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 71/178 (39%), Positives = 103/178 (57%)
Query: 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404
GHRVL+F+Q + LD+++DFL+ + RLDG + + E+ I ++ +++ Y
Sbjct: 938 GHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDDYNAENSP---Y--- 991
Query: 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINL 464
F F++STR+GGVG+NL ADTVI + D+NP D QAL RAHRIGQ N VL L
Sbjct: 992 -----FAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLVFQL 1046
Query: 465 VTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-LFD 520
+ + EE IM+ +K+ L H ++ DR E + +DL SI+ G LFD
Sbjct: 1047 MIRGSAEEKIMQIGRKKMVLDHVLI-----DRMAAEDD--DGEDLESILRHGAKALFD 1097
Score = 228 (85.3 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 67/185 (36%), Positives = 98/185 (52%)
Query: 151 VLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208
V++T+Y+ ++ D + LS+IPW I+DE QRLK+ S +Y L + P ++LMTGT
Sbjct: 712 VVITSYETMVDDSCRKVLSRIPWAGLIVDEGQRLKSDKSQIYEGLSK-MKFPFKVLMTGT 770
Query: 209 PIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI-KEQFTSLKGILSA 267
P+QNN EL+ L+ FC S K+A K G + KE L ++
Sbjct: 771 PLQNNTKELFNLLQFCDQS------------KNAEELEE--KYGTLSKENIPELHELIRP 816
Query: 268 FMLRRTKQKLVECGHLMLPPLTEI------TVLQKKVYASILRKELPKLLALSSRTANHQ 321
F LRRTK +++ LPP+ +I +VLQKK+Y SIL K + A+ R Q
Sbjct: 817 FFLRRTKAQVLT----FLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQRNEEDQ 872
Query: 322 SLQNT 326
L+ T
Sbjct: 873 PLKQT 877
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 306 (112.8 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 89/264 (33%), Positives = 142/264 (53%)
Query: 33 VTAELKPHQVEGLSWL--IRRYLLGVNVLLGDEMGLGKTLQAISFLS---YLK---FSQM 84
++A+L+ +Q EG++WL + +Y L + +L D+MGLGKTLQ I ++ Y + F +
Sbjct: 1354 ISADLRKYQQEGVNWLAFLNKYEL--HGILCDDMGLGKTLQTICIVASDHYNRQKLFEES 1411
Query: 85 -SPG----PFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQS 139
SP P L++CP ++ W E++ + P L+V YVG +R IR M ++S
Sbjct: 1412 GSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKM-----KKS 1466
Query: 140 QMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLM 199
DV++T+YD+ D L +I W Y ++DE +KN + L ++
Sbjct: 1467 ----------DVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKS-LRS 1515
Query: 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS-SAPKRGKIKEQF 258
RL+++GTPIQNN+ ELW+L F MP GT F F + +S A K +E+
Sbjct: 1516 YHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERG 1575
Query: 259 T-SLKGI---LSAFMLRRTKQKLV 278
T +L+ I + FMLRR K+ ++
Sbjct: 1576 TLALEAIHKQVLPFMLRRLKEDVL 1599
Score = 265 (98.3 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 80/247 (32%), Positives = 120/247 (48%)
Query: 305 KELPKLLALSSRTANHQSLQNTASGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQ-D 363
K PKL AL + L N++ S HRVL+F Q+ LD+++ D
Sbjct: 1699 KHAPKLTALG-QLLRDCGLGNSSVNSNGIDSALTNAV--SEHRVLIFCQLKDMLDMVEKD 1755
Query: 364 FLE--LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421
L+ + +Y RLDGS+ +R A+ F+ +I+ V +++T GG+
Sbjct: 1756 LLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSID------------VLLLTTHVGGL 1803
Query: 422 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481
GLNL ADTVIF E DWNP D QA+ RAHRIGQ V L+T +EE IM K
Sbjct: 1804 GLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFK 1863
Query: 482 LRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAINN---EESDDLRLSGLN 538
+ V VV+++ +++ TD + + F + + + N EES+D GL+
Sbjct: 1864 MN-----VASTVVNQQNAGLSSIGTDQILDL-FNTTADEQQTVQNIDKEESEDAAGRGLS 1917
Query: 539 SMVEKVI 545
+K +
Sbjct: 1918 GTSKKAL 1924
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 296 (109.3 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 91/298 (30%), Positives = 151/298 (50%)
Query: 5 ERLQVAAKIIHDNDER-DGQTPVD-AAEFGVTAELKPHQVEGLSWL--IRRYLLGVNVLL 60
E +Q+ AK H ++ DG+ + + AEL+ +Q +G++WL + +Y L + +L
Sbjct: 60 ELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKL--HGIL 117
Query: 61 GDEMGLGKTLQAISFLS---------YL--KFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109
D+MGLGKTLQ+I L+ Y K ++ P P LV+CP ++T WV E+ KF
Sbjct: 118 CDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFC 177
Query: 110 PK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLS 167
+ L L Y G +R ++ + H ++++ +YDVV D F
Sbjct: 178 SREYLNPLHYTGPPTERIRLQHQVKRH---------------NLIVASYDVVRNDIDFFR 222
Query: 168 QIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPS 227
I + Y I+DE +KN + L +++ R++++GTPIQNN+ ELW+L F MP
Sbjct: 223 NIKFNYCILDEGHVIKNGKTKLSKAVKQ-LTANYRIILSGTPIQNNVLELWSLFDFLMPG 281
Query: 228 VFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ------FTSLKGILSAFMLRRTKQKLVE 279
GT QF + + + +S R +EQ +L + F+LRR K+ +++
Sbjct: 282 FLGTERQFAARYGKPI-LASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ 338
Score = 258 (95.9 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 74/198 (37%), Positives = 105/198 (53%)
Query: 346 HRVLLFAQMTQTLDILQ-DFLE--LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402
HR+L+F Q+ LDI++ D L+ L +Y RLDGSI +R + + F+ +I+
Sbjct: 473 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSID---- 528
Query: 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462
V +++T GG+GLNL ADTV+F E DWNP D QA+ RAHRIGQ V
Sbjct: 529 --------VLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 580
Query: 463 NLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPK 522
L+T T+EE IM + K+ +++ V+ +E ++ TD L + F L D K
Sbjct: 581 RLITRGTLEEKIMGLQKFKMNIANTVIS-----QENSSLQSMGTDQLLDL-FTLDK-DGK 633
Query: 523 AINNEESDDLRLSGLNSM 540
A E D SG SM
Sbjct: 634 A----EKADTSTSGKASM 647
Score = 44 (20.5 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 253 KIKEQFTSLKGILSAFMLRRTKQKLVECG 281
K+ Q +SL I A L KQ L++CG
Sbjct: 427 KLAVQNSSLHDIQHAPKLSALKQLLLDCG 455
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 301 (111.0 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 90/336 (26%), Positives = 168/336 (50%)
Query: 1 MKYKERLQVAAKIIHDNDERDGQTPVDAAEFG-VTAELKPHQVEGLSWLIRRYLLGVNVL 59
++ KE + A + ++DE D + G + +L +Q G+ W+ + +
Sbjct: 449 LREKEAKREAGE--EESDESDAEFDEGFKIPGFLWKKLFKYQQTGVRWMWELHCQQAGGI 506
Query: 60 LGDEMGLGKTLQAISFLSYLKFSQMSP----------GPFLVLCPLSVTDGWVSEMAKFT 109
LGDEMGLGKT+Q I+FL+ L +S++ GP +++CP +V WV E +
Sbjct: 507 LGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWW 566
Query: 110 P--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLS 167
P ++ VL G ++ + + E V +L+T+Y + + Q ++
Sbjct: 567 PPFRVAVLHDTGSFTSKKE--KLIPEIVASHG-----------ILITSYSYIRIMQDYIQ 613
Query: 168 QIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPS 227
+ W Y I+DE +++NP++ + ++ F P R +++G+P+QNNL ELW+L F P
Sbjct: 614 RYDWHYVILDEGHKIRNPNAGVTTACKQ-FRTPHRFILSGSPMQNNLKELWSLFDFVFPG 672
Query: 228 VFGTLNQFLSTFKDAV----HSSSAPKRGKIKEQFTS-LKGILSAFMLRRTKQKLVECGH 282
GTL F+ F + +++++P + + + L+ ++ ++LRR K + +
Sbjct: 673 KLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKADVK--AN 730
Query: 283 LMLPPLTE------ITVLQKKVYASIL-RKELPKLL 311
L LP E +T Q++VY + L KE+ ++L
Sbjct: 731 LSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQIL 766
Score = 264 (98.0 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 73/216 (33%), Positives = 110/216 (50%)
Query: 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401
+ GHRVLLF Q Q L+IL+ F++ +SY ++DG+ R I F+ Q+
Sbjct: 830 HKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFN-QN------ 882
Query: 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461
D FVF+++TR GG+G+NL A+ V+ Y+ DWNP D QA +RA RIGQ V
Sbjct: 883 -----KDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTV 937
Query: 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDP 521
L+T T+EE I R K L++ V+ D K+R +++D+ + L P
Sbjct: 938 YRLLTAGTIEEKIYHRQIFKQFLTNRVLKDP------KQRRFFKSNDIYELFT---LSSP 988
Query: 522 KAINNEESDDLRLSGLNSMVEKVIAMRHEQVSGKAG 557
E+ + +G S V+ + RH+ S G
Sbjct: 989 DGSQGTETSAI-FAGTGSDVQ--VPKRHKTSSPSQG 1021
Score = 46 (21.3 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 84 MSP--GPFLVLCPLSVTDGWVS--EMAKFTPKLEVLRYVGEREQRRN-----IRRTMYEH 134
+SP P L P + D +S ++ P VG + R++ I R
Sbjct: 11 LSPLSSPVSALTPGAPEDNGLSIPGSSREEPAAACPETVGAQNSRKSQPLLQINRQEILS 70
Query: 135 VKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQI 169
V SQ + + L DV YD +++QG L Q+
Sbjct: 71 VDHSSQAAELQGLGVDV----YDQDVLEQGVLQQV 101
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 483 (175.1 bits), Expect = 3.8e-45, P = 3.8e-45
Identities = 157/524 (29%), Positives = 246/524 (46%)
Query: 22 GQTP-VDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80
G P VD + A L+P+Q G+ WL+ LG LL D+MGLGK++Q I++L Y+K
Sbjct: 436 GDIPKVDVPS-SLHATLRPYQQHGIEWLLYLRKLGFGALLADDMGLGKSIQTITYLLYIK 494
Query: 81 FSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQ 140
+ + GP L++ P SV W E +F P L V + G R E K+ Q
Sbjct: 495 ENNLQTGPALIVAPTSVLGNWQKEFERFAPNLRVQLHYGSN-------RAKGESFKDFLQ 547
Query: 141 MSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMP 200
+ DV+LT+Y + +D+ LS + W I+DEAQ +KNP + +R +
Sbjct: 548 SA-------DVVLTSYALAQLDEEELSTLCWDAVILDEAQNIKNPHTKQSKAVR-NLQAN 599
Query: 201 RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260
++ +TGTP++N L+ELW++ F G+L QF F + GKI++
Sbjct: 600 HKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRFVSPIEKDR--DEGKIQQ---- 653
Query: 261 LKGILSAFMLRRTKQKLVECGHLM----LPPLTEITVLQKKVYASILRKELPKLLALSS- 315
++ +S F+LRRTK+ +L +T Q +Y +++ L + LS
Sbjct: 654 VQRFISPFLLRRTKKDQTVALNLPDKQEQKAYCPLTGEQASLYEQLVQDTLQNVEGLSGI 713
Query: 316 --------------RTANHQSL--QNTA-------SGXXXXXXXXXXXXYNSGHRVLLFA 352
+ NH +L + T S + L+F
Sbjct: 714 ERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTSTLMELIENIKDQNESCLIFT 773
Query: 353 QMTQTLDILQDFLELRKYSYER---LDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDA 409
Q ++L++ LE ++ +R L+GS+ +ER I F + G D
Sbjct: 774 QYIGMGNMLKNVLE--EHFGQRVLFLNGSVPKKERDKMIEQF-----------QNGTYD- 819
Query: 410 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469
+F++S +AGG GLNL AA+ VI Y++ WNP V+ QA RA+RIGQ V L+T T
Sbjct: 820 -IFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGT 878
Query: 470 VEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII 513
+EE I ERK L++ V+ D T + TD+L+ ++
Sbjct: 879 LEEKIDEMLERKQSLNNAVITSD------SWMTELSTDELKELL 916
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 322 (118.4 bits), Expect = 9.6e-45, Sum P(2) = 9.6e-45
Identities = 97/267 (36%), Positives = 137/267 (51%)
Query: 19 ERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSY 78
E + Q P A G+T LK +Q+ GL+WL Y ++ +L DEMGLGKT Q ISFL+
Sbjct: 399 EYNSQQPSSIAS-GIT--LKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLAS 455
Query: 79 LKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQ 138
LK + LV+ P S W+ E KF P L V Y G + +R N R + +
Sbjct: 456 LKEKGIQ-NRHLVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSERINKRYYLMD----- 509
Query: 139 SQMSNVSPLPFDVLLTTYDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLRE 195
FDVL+TTY + D+ FL + + +I DE LKN S Y L
Sbjct: 510 --------TDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMN 561
Query: 196 HFLMPR--RLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLST-FKDAVHSSSAPKRG 252
+P RLL+TGTP+QNNL EL +L+ F +P VF Q L +K S +R
Sbjct: 562 ---IPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERA 618
Query: 253 KI-KEQFTSLKGILSAFMLRRTKQKLV 278
+ +E+ + K I++ F+LRR K+ ++
Sbjct: 619 YLSQERISRAKTIMNPFILRRRKENVL 645
Score = 231 (86.4 bits), Expect = 9.6e-45, Sum P(2) = 9.6e-45
Identities = 58/154 (37%), Positives = 88/154 (57%)
Query: 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406
R+L+F+Q TQ LDIL+ L + RLDGS E R Q I+ ++
Sbjct: 782 RILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETR---------QQLIDDFHT---- 828
Query: 407 NDAF-VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLV 465
N+ + VF++ST++GG G+NL A+ VI ++ +NP D QA RAHR+GQ V L+
Sbjct: 829 NENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLI 888
Query: 466 TEHTVEEVIMRRAERKLRLSHNVVGD-DVVDREV 498
T++T+EE I R A KL L ++ D + + +E+
Sbjct: 889 TKNTIEENIRRLANTKLTLESSLTTDSEKIQKEI 922
WARNING: HSPs involving 303 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 673 631 0.00091 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 553
No. of states in DFA: 619 (66 KB)
Total size of DFA: 313 KB (2161 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.53u 0.13s 51.66t Elapsed: 00:00:02
Total cpu time: 51.62u 0.13s 51.75t Elapsed: 00:00:02
Start: Mon May 20 17:46:09 2013 End: Mon May 20 17:46:11 2013
WARNINGS ISSUED: 2