BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005858
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 174/507 (34%), Positives = 271/507 (53%), Gaps = 76/507 (14%)
Query: 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94
EL+ Q+ G++W+ + G N +L DEMGLGKT+Q ++F+S+L F++ GP +++ P
Sbjct: 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP 294
Query: 95 LSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR-TMYEHVKEQSQMSNVSPLPFDVLL 153
LS W+ K+ P L + Y+G ++ R IR Y + + + + + + F+VLL
Sbjct: 295 LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKT----MKFNVLL 350
Query: 154 TTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNN 213
TTY+ +L D+ L I W + +DEA RLKN S LY L F + R+L+TGTP+QNN
Sbjct: 351 TTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNS-FKVANRMLITGTPLQNN 409
Query: 214 LSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRT 273
+ EL AL++F MP F T++Q + F++ +E L + F+LRR
Sbjct: 410 IKELAALVNFLMPGRF-TIDQEID-FENQDEEQ--------EEYIHDLHRRIQPFILRRL 459
Query: 274 KQKLVECGHLMLPPLT------EITVLQKKVYASILRKELPKLLALS------------- 314
K+ + + LP T E++ +Q + Y +IL K L A +
Sbjct: 460 KKDVEKS----LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNE 515
Query: 315 -SRTANHQSLQNTA-------------------------SGXXXXXXXXXXXXYNSGHRV 348
+ +NH L + A SG GHRV
Sbjct: 516 LKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRV 575
Query: 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408
L+F+QM + LDIL D+L ++ +++RLDG++ + +R +I HF+ + ND
Sbjct: 576 LIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS----------ND 625
Query: 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468
FVF++STRAGG+G+NL+ ADTV+ ++ DWNPQ D QA+ RAHRIGQ NHV+ LV++
Sbjct: 626 -FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684
Query: 469 TVEEVIMRRAERKLRLSHNVVGDDVVD 495
TVEE ++ RA +K+ L + ++ V D
Sbjct: 685 TVEEEVLERARKKMILEYAIISLGVTD 711
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 243/515 (47%), Gaps = 85/515 (16%)
Query: 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFL 90
+ + A L+P+Q++G SW+ LG + L D+MGLGKTLQ I+ S K + P L
Sbjct: 32 YNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSL 90
Query: 91 VLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFD 150
V+CPLSV W E++KF P LR+ E R I+ Y D
Sbjct: 91 VICPLSVLKNWEEELSKFAPH---LRFAVFHEDRSKIKLEDY-----------------D 130
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
++LTTY V+L D L ++ W Y +IDEAQ +KNP + ++ ++E R+ +TGTPI
Sbjct: 131 IILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE-LKSKYRIALTGTPI 188
Query: 211 QNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270
+N + +LW++M F P + G+ ++F S F + KE+ LK I+S F+L
Sbjct: 189 ENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD----NMAKEE---LKAIISPFIL 241
Query: 271 RRTKQKLVECGHLMLPPLTEITVL------QKKVYAS--------------ILRKE--LP 308
RRTK LP E V Q +Y + I RK L
Sbjct: 242 RRTKYDKAIIND--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILS 299
Query: 309 KLLALSSRTANHQSLQNTA------SGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQ 362
LL L + +H +L SG + G ++ +F Q I++
Sbjct: 300 TLLKL-KQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIR 358
Query: 363 DFLELRKYSYER--LDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420
+ +E ++ + E L G + +ER I F +++ ++S +AGG
Sbjct: 359 NIIE-KELNTEVPFLYGELSKKERDDIISKFQNNPSVK------------FIVLSVKAGG 405
Query: 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480
G+NL +A+ VI +++ WNP V+ QA R +RIGQ +V+ L++ T+EE I +
Sbjct: 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465
Query: 481 KLRLSHNVV--GDDVVDREVKERTAVETDDLRSII 513
K L +++ GD + T + T++LR +I
Sbjct: 466 KRSLFKDIISSGDSWI-------TELSTEELRKVI 493
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 241/515 (46%), Gaps = 85/515 (16%)
Query: 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFL 90
+ + A L+P+Q++G SW LG + L D+ GLGKTLQ I+ S K + P L
Sbjct: 32 YNIKANLRPYQIKGFSWXRFXNKLGFGICLADDXGLGKTLQTIAVFSDAK-KENELTPSL 90
Query: 91 VLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFD 150
V+CPLSV W E++KF P LR+ E R I+ Y D
Sbjct: 91 VICPLSVLKNWEEELSKFAPH---LRFAVFHEDRSKIKLEDY-----------------D 130
Query: 151 VLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210
++LTTY V+L D L ++ W Y +IDEAQ +KNP + ++ ++E R+ +TGTPI
Sbjct: 131 IILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE-LKSKYRIALTGTPI 188
Query: 211 QNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270
+N + +LW++ F P + G+ ++F S F + KE+ LK I+S F+L
Sbjct: 189 ENKVDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKGD----NXAKEE---LKAIISPFIL 241
Query: 271 RRTKQKLVECGHLMLPPLTEITVL------QKKVYAS--------------ILRKE--LP 308
RRTK LP E V Q Y + I RK L
Sbjct: 242 RRTKYDKAIIND--LPDKIETNVYCNLTPEQAAXYKAEVENLFNNIDSVTGIKRKGXILS 299
Query: 309 KLLALSSRTANHQSLQNTA------SGXXXXXXXXXXXXYNSGHRVLLFAQMTQTLDILQ 362
LL L + +H +L SG + G ++ +F Q I++
Sbjct: 300 TLLKL-KQIVDHPALLKGGEQSVRRSGKXIRTXEIIEEALDEGDKIAIFTQFVDXGKIIR 358
Query: 363 DFLELRKYSYER--LDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420
+ +E ++ + E L G + +ER I F +++ ++S +AGG
Sbjct: 359 NIIE-KELNTEVPFLYGELSKKERDDIISKFQNNPSVK------------FIVLSVKAGG 405
Query: 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480
G+NL +A+ VI +++ WNP V+ QA R +RIGQ +V+ L++ T+EE I +
Sbjct: 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465
Query: 481 KLRLSHNVV--GDDVVDREVKERTAVETDDLRSII 513
K L +++ GD + T + T++LR +I
Sbjct: 466 KRSLFKDIISSGDSWI-------TELSTEELRKVI 493
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/524 (26%), Positives = 229/524 (43%), Gaps = 95/524 (18%)
Query: 37 LKPHQVEGLSWLI-----RRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGP--- 88
L+PHQ EG+ +L RR ++ DEMGLGKTLQ I+ + L P
Sbjct: 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID 115
Query: 89 -FLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQ-----SQMS 142
+V+ P S+ W +E+ K ++G R Q I + + + SQ
Sbjct: 116 KVIVVSPSSLVRNWYNEVGK---------WLGGRVQPVAIDGGSKDEIDSKLVNFISQQG 166
Query: 143 NVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRR 202
P P +L+ +Y+ + L + I DE RLKN + Y L RR
Sbjct: 167 MRIPTP--ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNS-MNAQRR 223
Query: 203 LLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAV-----HSSSAPKRGKIKEQ 257
+L++GTPIQN+L E ++L+HF + GT +F F+ + +S R +++
Sbjct: 224 VLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283
Query: 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELP--- 308
L I++ ++RRT L + LP E +T LQK++Y L++ P
Sbjct: 284 LQELISIVNRCLIRRTSDILSK----YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVES 339
Query: 309 -----------KLLALSSRTANHQSL--------------------QNTASGXXXXXXXX 337
+ + NH +L QN ++
Sbjct: 340 LQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSG 399
Query: 338 XXXXYN---------SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAI 388
+ + +V+L + TQTLD+ + R+Y Y RLDG++ ++R +
Sbjct: 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 459
Query: 389 RHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQ 448
F+ S+ E F+FM+S++AGG GLNL+ A+ ++ ++ DWNP D+QA+
Sbjct: 460 ERFNNPSSPE-----------FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMA 508
Query: 449 RAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD 492
R R GQ L++ T+EE I++R K LS VV ++
Sbjct: 509 RVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEE 552
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 24/175 (13%)
Query: 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYER--LDGSIRAEERFAAIRHFSVQSAIERL 400
+ G ++ +F Q I+++ +E ++ + E L G + +ER I F +++
Sbjct: 110 DEGDKIAIFTQFVDMGKIIRNIIE-KELNTEVPFLYGELSKKERDDIISKFQNNPSVK-- 166
Query: 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460
++S +AGG G+NL +A+ VI +++ WNP V+ QA R +RIGQ +V+
Sbjct: 167 ----------FIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 216
Query: 461 SINLVTEHTVEEVIMRRAERKLRLSHNVV--GDDVVDREVKERTAVETDDLRSII 513
L++ T+EE I + K L +++ GD + T + T++LR +I
Sbjct: 217 VHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWI-------TELSTEELRKVI 264
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 40/225 (17%)
Query: 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV 91
G L PHQ+ + RR+ VLL DE+GLGKT++A L S + L+
Sbjct: 149 GQRTSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGXILHQQLLSGAAE-RVLI 205
Query: 92 LCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE---HVKEQSQMSNVSPLP 148
+ P ++ W+ +E LR R N+R +++ + + Q N P
Sbjct: 206 IVPETLQHQWL---------VEXLR-------RFNLRFALFDDERYAEAQHDAYN----P 245
Query: 149 FD---VLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQRL---KNPSSVLYNV---LREH 196
FD +++ + D + L + W ++DEA L ++ S Y L EH
Sbjct: 246 FDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305
Query: 197 FLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKD 241
+P LL+T TP Q +A + P+ F QF+ K+
Sbjct: 306 --VPGVLLLTATPEQLGXESHFARLRLLDPNRFHDFAQFVEEQKN 348
>pdb|3VPB|A Chain A, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|B Chain B, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|C Chain C, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPB|D Chain D, Argx From Sulfolobus Tokodaii Complexed With
Lysw/glu/adp/mg/zn/sulfate
pdb|3VPC|A Chain A, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|B Chain B, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|C Chain C, Argx From Sulfolobus Tokodaii Complexed With Adp
pdb|3VPC|D Chain D, Argx From Sulfolobus Tokodaii Complexed With Adp
Length = 282
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 121 REQRRNIRRTMYEHVKEQSQMSNVS--PLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178
R++ + I + + E+ K Q + NV+ PLPF+ L YDV ++ + + + +++
Sbjct: 11 RQEEKLIAKALEEN-KVQYDIINVAQEPLPFNKALGRYDVAIIRPVSMYRALYSSAVLEA 69
Query: 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWA 219
A SS + NV + L +L G PI +++ L A
Sbjct: 70 AGVHTINSSDVINVCGDKILTYSKLYREGIPIPDSIIALSA 110
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFY-----------EQDWNPQVDKQALQRAHRIGQ 455
ND +++T A G+GLNL + +IFY E++ P QALQ A R G+
Sbjct: 370 NDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428
Query: 456 MN 457
+
Sbjct: 429 FS 430
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 407 NDAFVFMISTRAGGVGLNLVAADTVIFY-----------EQDWNPQVDKQALQRAHRIGQ 455
ND +++T A G GLNL + +IFY E++ P QALQ A R G+
Sbjct: 370 NDPCKILVATDAIGXGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428
Query: 456 MNHVLSINLVTEHTVEEV-----IMRRAERKLR 483
+ VT E++ I++R +R
Sbjct: 429 FSSRFKEGEVTTXNHEDLSLLKEILKRPVDPIR 461
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 24/132 (18%)
Query: 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407
VL+FA+ +D + ++L L+ + G EER AI F G
Sbjct: 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF-----------REGKK 105
Query: 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM----NHVLSIN 463
D +++T GL+ A VI Y D +++ HRIG+ N ++
Sbjct: 106 D---VLVATDVASKGLDFPAIQHVINY--DMPEEIE----NYVHRIGRTGCSGNTGIATT 156
Query: 464 LVTEHTVEEVIM 475
+ + E V+M
Sbjct: 157 FINKACDESVLM 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,990,599
Number of Sequences: 62578
Number of extensions: 651597
Number of successful extensions: 1352
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 18
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)