Query 005858
Match_columns 673
No_of_seqs 353 out of 2430
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 7E-112 1E-116 903.9 44.4 591 29-673 159-807 (971)
2 KOG0384 Chromodomain-helicase 100.0 2.6E-99 6E-104 842.3 37.2 480 30-543 364-888 (1373)
3 KOG0387 Transcription-coupled 100.0 5.6E-89 1.2E-93 732.2 39.3 461 27-512 196-696 (923)
4 KOG0391 SNF2 family DNA-depend 100.0 9.4E-89 2E-93 744.5 36.4 456 27-517 606-1430(1958)
5 PLN03142 Probable chromatin-re 100.0 9.3E-87 2E-91 769.8 50.8 460 23-521 156-650 (1033)
6 KOG0389 SNF2 family DNA-depend 100.0 6.5E-87 1.4E-91 715.2 38.6 432 34-494 397-914 (941)
7 KOG0388 SNF2 family DNA-depend 100.0 2.7E-86 5.8E-91 698.3 29.2 443 28-494 559-1180(1185)
8 KOG0392 SNF2 family DNA-depend 100.0 4E-83 8.7E-88 708.9 40.4 449 27-512 966-1493(1549)
9 KOG0386 Chromatin remodeling c 100.0 4.2E-81 9E-86 684.8 30.7 439 31-497 389-867 (1157)
10 KOG1015 Transcription regulato 100.0 1.3E-74 2.9E-79 624.2 34.0 495 24-553 656-1359(1567)
11 KOG0390 DNA repair protein, SN 100.0 5.3E-73 1.1E-77 626.8 39.1 440 30-494 232-733 (776)
12 KOG1002 Nucleotide excision re 100.0 4.2E-67 9E-72 535.3 31.5 446 24-512 172-788 (791)
13 KOG4439 RNA polymerase II tran 100.0 3.5E-66 7.5E-71 548.5 33.3 450 23-516 312-901 (901)
14 KOG1000 Chromatin remodeling p 100.0 1.7E-59 3.6E-64 480.5 29.4 416 31-489 193-624 (689)
15 COG0553 HepA Superfamily II DN 100.0 8.1E-59 1.8E-63 555.9 38.3 434 31-491 333-845 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.4E-57 3.1E-62 483.8 23.8 448 31-512 249-887 (1387)
17 PRK04914 ATP-dependent helicas 100.0 1.1E-54 2.4E-59 501.9 34.6 426 32-493 148-630 (956)
18 KOG1001 Helicase-like transcri 100.0 1.7E-47 3.7E-52 427.3 20.4 412 39-491 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 4.1E-48 8.9E-53 425.6 3.7 372 24-422 280-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 9E-39 1.9E-43 358.2 32.0 342 32-477 251-616 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-35 2.3E-40 311.6 24.0 241 40-307 1-265 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 5.5E-34 1.2E-38 335.7 36.8 411 34-485 13-496 (773)
23 KOG0298 DEAD box-containing he 100.0 9.8E-33 2.1E-37 311.2 23.1 207 54-288 373-617 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 2.9E-30 6.3E-35 269.1 34.6 414 34-491 13-504 (542)
25 PHA02558 uvsW UvsW helicase; P 100.0 5.1E-29 1.1E-33 277.8 31.5 330 34-468 112-455 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-28 2.9E-33 269.3 29.1 365 31-480 31-406 (442)
27 PTZ00110 helicase; Provisional 99.9 8.5E-26 1.9E-30 253.8 28.5 321 36-468 152-484 (545)
28 TIGR00614 recQ_fam ATP-depende 99.9 2E-25 4.4E-30 247.6 27.6 309 35-462 10-329 (470)
29 PRK11776 ATP-dependent RNA hel 99.9 4.5E-25 9.8E-30 244.9 29.0 317 35-468 25-349 (460)
30 PRK11192 ATP-dependent RNA hel 99.9 6.7E-25 1.4E-29 242.0 28.0 315 35-461 22-347 (434)
31 PRK01297 ATP-dependent RNA hel 99.9 1.8E-24 4E-29 240.8 31.0 317 35-467 108-441 (475)
32 PRK10590 ATP-dependent RNA hel 99.9 1.4E-24 3E-29 240.3 28.3 312 35-461 22-347 (456)
33 PRK04837 ATP-dependent RNA hel 99.9 1.8E-24 4E-29 237.5 27.6 316 35-467 29-361 (423)
34 PRK11634 ATP-dependent RNA hel 99.9 4.1E-24 9E-29 242.5 30.0 309 35-458 27-344 (629)
35 KOG1123 RNA polymerase II tran 99.9 2.7E-25 5.9E-30 229.3 17.5 362 8-473 277-658 (776)
36 PRK04537 ATP-dependent RNA hel 99.9 4.3E-24 9.4E-29 240.9 28.1 316 35-467 30-363 (572)
37 PRK11057 ATP-dependent DNA hel 99.9 6.4E-24 1.4E-28 241.9 28.5 304 35-459 24-336 (607)
38 PLN00206 DEAD-box ATP-dependen 99.9 1.1E-23 2.3E-28 236.2 29.4 329 35-480 142-485 (518)
39 KOG0354 DEAD-box like helicase 99.9 4.6E-23 1E-27 227.4 32.1 414 32-490 58-550 (746)
40 TIGR01389 recQ ATP-dependent D 99.9 1.6E-23 3.4E-28 239.2 28.5 304 36-460 13-325 (591)
41 PTZ00424 helicase 45; Provisio 99.9 3.2E-23 7E-28 226.5 27.4 318 36-468 50-374 (401)
42 KOG0331 ATP-dependent RNA heli 99.9 2.7E-23 5.8E-28 222.9 24.7 316 35-460 112-442 (519)
43 KOG0330 ATP-dependent RNA heli 99.9 2E-23 4.3E-28 210.4 21.8 326 35-480 82-417 (476)
44 PLN03137 ATP-dependent DNA hel 99.9 4E-23 8.6E-28 237.8 26.1 312 35-463 459-784 (1195)
45 TIGR00643 recG ATP-dependent D 99.9 5.6E-22 1.2E-26 226.9 32.8 311 32-461 231-561 (630)
46 PRK10917 ATP-dependent DNA hel 99.9 5.5E-22 1.2E-26 228.5 32.7 311 31-460 256-583 (681)
47 TIGR00580 mfd transcription-re 99.9 2.8E-22 6E-27 234.1 30.1 314 32-467 447-769 (926)
48 PRK11448 hsdR type I restricti 99.9 2.8E-22 6.1E-27 238.1 28.8 357 30-465 407-815 (1123)
49 TIGR03817 DECH_helic helicase/ 99.9 1.5E-21 3.2E-26 225.9 31.0 334 36-477 36-395 (742)
50 PRK10689 transcription-repair 99.9 1.3E-21 2.7E-26 233.4 27.9 310 31-460 595-913 (1147)
51 PRK13767 ATP-dependent helicas 99.9 1.2E-21 2.6E-26 231.1 27.0 325 35-463 31-395 (876)
52 COG0513 SrmB Superfamily II DN 99.9 2.4E-21 5.2E-26 215.9 26.2 331 35-481 50-392 (513)
53 PRK02362 ski2-like helicase; P 99.9 3.6E-20 7.7E-25 216.4 29.9 321 35-467 22-396 (737)
54 TIGR01587 cas3_core CRISPR-ass 99.9 2.4E-19 5.3E-24 192.9 28.8 324 58-481 2-354 (358)
55 PRK01172 ski2-like helicase; P 99.8 3.5E-19 7.5E-24 206.6 29.9 313 34-465 20-375 (674)
56 PRK00254 ski2-like helicase; P 99.8 2.7E-19 5.8E-24 208.5 27.9 320 35-469 22-389 (720)
57 TIGR00348 hsdR type I site-spe 99.8 1.6E-18 3.4E-23 199.1 30.1 367 33-466 235-649 (667)
58 TIGR02621 cas3_GSU0051 CRISPR- 99.8 8.1E-19 1.8E-23 199.8 26.5 322 35-464 14-390 (844)
59 KOG0328 Predicted ATP-dependen 99.8 9.6E-20 2.1E-24 176.5 15.7 312 40-468 53-373 (400)
60 TIGR03714 secA2 accessory Sec 99.8 1.1E-18 2.4E-23 196.8 26.2 366 36-458 68-529 (762)
61 COG1200 RecG RecG-like helicas 99.8 1.6E-18 3.5E-23 189.0 26.0 309 31-458 257-583 (677)
62 KOG0345 ATP-dependent RNA heli 99.8 3.6E-18 7.8E-23 176.5 23.6 314 36-461 28-359 (567)
63 KOG0350 DEAD-box ATP-dependent 99.8 1.4E-18 3E-23 180.6 20.5 372 35-481 158-551 (620)
64 KOG0338 ATP-dependent RNA heli 99.8 8.8E-18 1.9E-22 174.8 25.7 302 56-468 219-533 (691)
65 KOG0333 U5 snRNP-like RNA heli 99.8 1.1E-18 2.4E-23 182.2 19.0 330 36-459 267-617 (673)
66 COG1201 Lhr Lhr-like helicases 99.8 6E-18 1.3E-22 191.7 25.3 335 35-484 21-376 (814)
67 COG0514 RecQ Superfamily II DN 99.8 3.9E-18 8.5E-23 186.7 22.9 307 35-462 16-333 (590)
68 COG4096 HsdR Type I site-speci 99.8 3.2E-18 6.9E-23 188.9 19.2 360 27-465 156-545 (875)
69 PRK09200 preprotein translocas 99.8 4.9E-17 1.1E-21 185.2 27.4 130 327-477 410-547 (790)
70 TIGR00963 secA preprotein tran 99.8 6.1E-18 1.3E-22 189.7 19.1 115 328-458 388-509 (745)
71 KOG0342 ATP-dependent RNA heli 99.8 7.6E-18 1.7E-22 175.3 18.1 298 53-456 117-427 (543)
72 PRK09401 reverse gyrase; Revie 99.8 3.6E-17 7.8E-22 195.9 26.2 294 34-452 78-430 (1176)
73 KOG0340 ATP-dependent RNA heli 99.8 1.8E-17 4E-22 165.8 19.1 311 35-456 28-351 (442)
74 KOG0343 RNA Helicase [RNA proc 99.8 3.6E-17 7.9E-22 171.7 22.1 331 35-482 90-435 (758)
75 PRK09751 putative ATP-dependen 99.8 4.2E-17 9.1E-22 196.0 24.5 304 60-453 1-371 (1490)
76 KOG0335 ATP-dependent RNA heli 99.8 4.8E-17 1E-21 172.1 21.3 316 35-462 95-440 (482)
77 KOG0336 ATP-dependent RNA heli 99.7 2.3E-17 5.1E-22 167.3 16.5 294 54-457 256-563 (629)
78 KOG4284 DEAD box protein [Tran 99.7 8.6E-18 1.9E-22 178.8 13.3 310 38-456 49-369 (980)
79 PRK12898 secA preprotein trans 99.7 2.7E-16 5.8E-21 175.6 25.6 132 327-479 455-594 (656)
80 PHA02653 RNA helicase NPH-II; 99.7 2.4E-16 5.1E-21 178.7 25.3 320 33-470 157-516 (675)
81 TIGR03158 cas3_cyano CRISPR-as 99.7 5.6E-16 1.2E-20 165.8 25.1 316 40-451 1-357 (357)
82 COG1205 Distinct helicase fami 99.7 2.2E-16 4.8E-21 183.7 22.8 336 36-480 70-434 (851)
83 KOG0348 ATP-dependent RNA heli 99.7 1.4E-15 2.9E-20 159.5 24.6 318 54-459 173-547 (708)
84 KOG0341 DEAD-box protein abstr 99.7 1.3E-17 2.8E-22 168.0 9.3 321 37-475 193-535 (610)
85 PRK05580 primosome assembly pr 99.7 2.5E-14 5.3E-19 164.7 34.5 326 32-466 140-549 (679)
86 PF04851 ResIII: Type III rest 99.7 1.6E-16 3.4E-21 153.7 13.0 157 35-210 2-183 (184)
87 COG1204 Superfamily II helicas 99.7 2.1E-15 4.6E-20 173.2 23.8 311 36-457 31-397 (766)
88 TIGR01054 rgy reverse gyrase. 99.7 2.7E-15 5.8E-20 180.2 25.2 283 34-438 76-409 (1171)
89 cd00079 HELICc Helicase superf 99.7 1.4E-16 3.1E-21 145.0 10.9 120 329-462 12-131 (131)
90 KOG0326 ATP-dependent RNA heli 99.7 5.5E-17 1.2E-21 160.0 8.4 286 58-456 125-419 (459)
91 KOG0339 ATP-dependent RNA heli 99.7 2.9E-15 6.2E-20 156.0 19.5 305 55-471 260-578 (731)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.2E-14 2.6E-19 168.7 27.0 295 48-468 10-336 (819)
93 PRK09694 helicase Cas3; Provis 99.7 3.6E-14 7.8E-19 164.8 29.8 343 34-456 284-665 (878)
94 TIGR00595 priA primosomal prot 99.7 2.8E-14 6E-19 158.7 26.9 296 60-467 2-382 (505)
95 COG4889 Predicted helicase [Ge 99.7 6.2E-16 1.3E-20 169.3 13.0 171 29-209 154-350 (1518)
96 PRK14701 reverse gyrase; Provi 99.6 1.2E-14 2.5E-19 178.2 24.4 294 35-456 78-446 (1638)
97 COG1197 Mfd Transcription-repa 99.6 6.8E-14 1.5E-18 161.3 28.4 313 31-467 589-912 (1139)
98 PRK13104 secA preprotein trans 99.6 7.4E-14 1.6E-18 159.2 26.9 120 327-462 426-583 (896)
99 COG1202 Superfamily II helicas 99.6 4.3E-15 9.2E-20 157.0 14.5 317 35-467 215-552 (830)
100 PRK11664 ATP-dependent RNA hel 99.6 3.5E-14 7.6E-19 165.2 23.5 108 344-468 211-339 (812)
101 PRK12906 secA preprotein trans 99.6 5.5E-14 1.2E-18 159.4 24.3 117 327-459 422-546 (796)
102 KOG0344 ATP-dependent RNA heli 99.6 8.4E-15 1.8E-19 156.3 16.2 315 36-462 158-492 (593)
103 KOG0332 ATP-dependent RNA heli 99.6 1.1E-14 2.4E-19 146.9 15.7 113 328-456 315-433 (477)
104 KOG0347 RNA helicase [RNA proc 99.6 3.1E-14 6.7E-19 149.9 18.0 348 56-492 220-615 (731)
105 PRK12904 preprotein translocas 99.6 2.5E-13 5.4E-18 154.8 26.0 369 33-462 78-569 (830)
106 PF00271 Helicase_C: Helicase 99.6 3.3E-15 7.1E-20 123.4 6.3 78 363-454 1-78 (78)
107 KOG0334 RNA helicase [RNA proc 99.6 6.3E-14 1.4E-18 158.7 18.0 317 36-467 387-719 (997)
108 smart00487 DEXDc DEAD-like hel 99.6 5.5E-14 1.2E-18 136.9 15.1 160 34-212 6-173 (201)
109 COG4098 comFA Superfamily II D 99.6 6.6E-12 1.4E-16 125.9 29.4 313 31-465 92-415 (441)
110 PRK13107 preprotein translocas 99.6 4E-13 8.8E-18 152.7 23.5 369 34-459 80-584 (908)
111 KOG0327 Translation initiation 99.6 2.6E-14 5.7E-19 145.5 12.4 313 38-468 50-370 (397)
112 KOG0346 RNA helicase [RNA proc 99.5 1.7E-13 3.7E-18 141.0 16.8 308 40-461 45-405 (569)
113 TIGR00631 uvrb excinuclease AB 99.5 5.9E-11 1.3E-15 135.4 38.3 134 327-477 424-564 (655)
114 cd00046 DEXDc DEAD-like helica 99.5 1.5E-13 3.2E-18 125.9 14.0 137 57-209 2-144 (144)
115 KOG0351 ATP-dependent DNA heli 99.5 3.5E-13 7.7E-18 156.2 19.5 309 35-463 263-589 (941)
116 KOG0352 ATP-dependent DNA heli 99.5 1.4E-12 3E-17 133.7 19.6 322 38-463 22-359 (641)
117 PRK11131 ATP-dependent RNA hel 99.5 2.2E-12 4.8E-17 153.2 24.0 108 343-469 284-412 (1294)
118 KOG0952 DNA/RNA helicase MER3/ 99.5 1.8E-12 3.9E-17 145.9 21.2 310 52-467 123-490 (1230)
119 TIGR01967 DEAH_box_HrpA ATP-de 99.5 6E-12 1.3E-16 150.1 24.1 108 344-470 278-406 (1283)
120 COG0556 UvrB Helicase subunit 99.5 1.4E-11 3.1E-16 130.2 23.6 128 340-482 441-573 (663)
121 PRK05298 excinuclease ABC subu 99.5 9.9E-11 2.2E-15 134.4 32.7 125 327-468 428-557 (652)
122 smart00490 HELICc helicase sup 99.4 2.4E-13 5.2E-18 112.8 7.9 81 360-454 2-82 (82)
123 PRK12900 secA preprotein trans 99.4 1.6E-11 3.4E-16 140.5 24.7 114 328-457 581-702 (1025)
124 cd00268 DEADc DEAD-box helicas 99.4 6.8E-12 1.5E-16 123.7 16.7 156 36-210 21-185 (203)
125 COG1203 CRISPR-associated heli 99.4 2.2E-11 4.8E-16 141.7 22.5 365 34-488 193-572 (733)
126 PF00270 DEAD: DEAD/DEAH box h 99.4 5.7E-12 1.2E-16 120.2 14.6 156 39-214 2-166 (169)
127 KOG0337 ATP-dependent RNA heli 99.4 3.6E-12 7.8E-17 130.8 13.4 315 37-467 44-367 (529)
128 KOG0353 ATP-dependent DNA heli 99.4 5.1E-11 1.1E-15 120.4 20.2 294 36-445 94-403 (695)
129 PRK12899 secA preprotein trans 99.4 4.7E-10 1E-14 128.3 29.5 129 328-477 551-687 (970)
130 PRK12326 preprotein translocas 99.3 2.8E-10 6E-15 127.0 25.9 384 33-479 75-555 (764)
131 PRK13103 secA preprotein trans 99.2 1.6E-09 3.6E-14 123.8 22.6 120 327-462 431-587 (913)
132 PRK12903 secA preprotein trans 99.1 5E-09 1.1E-13 118.7 22.4 119 327-462 408-535 (925)
133 COG0610 Type I site-specific r 99.1 4.1E-09 8.8E-14 125.3 21.8 142 55-215 273-419 (962)
134 COG1110 Reverse gyrase [DNA re 99.1 1.4E-08 2.9E-13 115.3 23.7 312 34-437 80-416 (1187)
135 TIGR01407 dinG_rel DnaQ family 99.1 2.3E-08 5E-13 119.0 27.0 86 33-121 242-333 (850)
136 KOG0951 RNA helicase BRR2, DEA 99.0 5.3E-09 1.1E-13 120.0 16.8 72 369-455 607-689 (1674)
137 CHL00122 secA preprotein trans 98.9 9E-08 1.9E-12 109.4 21.8 84 327-425 406-490 (870)
138 KOG0329 ATP-dependent RNA heli 98.9 9.4E-09 2E-13 99.3 10.4 136 55-208 79-226 (387)
139 KOG0947 Cytoplasmic exosomal R 98.9 8.4E-08 1.8E-12 107.8 19.2 145 31-208 292-443 (1248)
140 COG4581 Superfamily II RNA hel 98.9 1.6E-07 3.4E-12 109.4 21.1 149 31-208 114-269 (1041)
141 COG1198 PriA Primosomal protei 98.8 7.7E-07 1.7E-11 101.4 24.5 157 34-210 196-360 (730)
142 PRK12901 secA preprotein trans 98.8 2.2E-07 4.8E-12 107.1 20.1 116 327-458 610-733 (1112)
143 TIGR00604 rad3 DNA repair heli 98.7 9.3E-07 2E-11 103.3 21.5 72 37-108 11-83 (705)
144 PRK12902 secA preprotein trans 98.7 2.4E-06 5.3E-11 97.7 23.5 84 327-425 421-505 (939)
145 PF13872 AAA_34: P-loop contai 98.7 1.8E-07 3.9E-12 94.9 12.2 183 34-241 35-254 (303)
146 COG1643 HrpA HrpA-like helicas 98.6 5.4E-07 1.2E-11 104.2 16.2 111 344-471 258-390 (845)
147 COG1199 DinG Rad3-related DNA 98.6 1.9E-05 4.1E-10 92.1 29.2 106 341-462 475-613 (654)
148 PRK08074 bifunctional ATP-depe 98.6 3.5E-05 7.7E-10 92.6 30.9 85 34-120 255-345 (928)
149 KOG0949 Predicted helicase, DE 98.6 9E-06 2E-10 92.2 22.2 164 35-222 510-682 (1330)
150 PF07652 Flavi_DEAD: Flaviviru 98.5 3.2E-07 6.8E-12 83.0 8.7 130 54-210 3-137 (148)
151 KOG0948 Nuclear exosomal RNA h 98.5 1.3E-06 2.9E-11 96.1 15.0 143 32-208 125-275 (1041)
152 PRK15483 type III restriction- 98.5 8.9E-07 1.9E-11 103.0 14.4 70 409-479 501-578 (986)
153 KOG1513 Nuclear helicase MOP-3 98.5 2.7E-06 5.8E-11 94.0 16.0 187 34-240 262-487 (1300)
154 TIGR00596 rad1 DNA repair prot 98.5 5E-06 1.1E-10 96.7 19.1 77 149-225 8-90 (814)
155 PRK07246 bifunctional ATP-depe 98.5 8.1E-05 1.7E-09 88.0 29.1 69 34-106 243-313 (820)
156 PF02399 Herpes_ori_bp: Origin 98.5 6.7E-06 1.4E-10 93.3 18.7 316 58-462 52-384 (824)
157 KOG0349 Putative DEAD-box RNA 98.4 6.6E-07 1.4E-11 92.6 8.7 96 344-453 504-602 (725)
158 TIGR02562 cas3_yersinia CRISPR 98.4 0.00027 5.8E-09 82.7 30.3 183 37-219 409-644 (1110)
159 KOG0950 DNA polymerase theta/e 98.4 1.3E-05 2.8E-10 91.3 18.2 71 371-455 524-598 (1008)
160 COG0653 SecA Preprotein transl 98.4 2.5E-05 5.5E-10 89.3 20.1 367 36-455 80-534 (822)
161 KOG0922 DEAH-box RNA helicase 98.4 6.1E-05 1.3E-09 83.1 22.0 113 344-470 257-392 (674)
162 KOG0920 ATP-dependent RNA heli 98.3 1.5E-05 3.2E-10 92.3 18.0 123 330-469 396-545 (924)
163 PF13871 Helicase_C_4: Helicas 98.3 1.4E-06 2.9E-11 88.4 8.4 93 386-492 52-152 (278)
164 smart00488 DEXDc2 DEAD-like he 98.3 3.9E-06 8.5E-11 87.1 11.6 77 32-108 4-84 (289)
165 smart00489 DEXDc3 DEAD-like he 98.3 3.9E-06 8.5E-11 87.1 11.6 77 32-108 4-84 (289)
166 PF13086 AAA_11: AAA domain; P 98.3 1.4E-05 3E-10 80.1 15.1 68 36-107 1-75 (236)
167 PF11496 HDA2-3: Class II hist 98.2 1.8E-05 3.8E-10 82.0 12.9 154 327-481 94-258 (297)
168 TIGR03117 cas_csf4 CRISPR-asso 98.1 4.9E-05 1.1E-09 86.2 14.5 78 41-119 2-85 (636)
169 COG3587 Restriction endonuclea 98.0 0.0012 2.7E-08 74.8 22.5 132 57-208 76-241 (985)
170 KOG0924 mRNA splicing factor A 97.9 0.00027 5.9E-09 77.7 15.7 116 346-475 564-704 (1042)
171 PF07517 SecA_DEAD: SecA DEAD- 97.8 0.00037 7.9E-09 70.9 13.6 124 32-182 73-209 (266)
172 KOG0923 mRNA splicing factor A 97.7 0.0023 4.9E-08 70.6 18.8 105 345-468 473-606 (902)
173 KOG0926 DEAH-box RNA helicase 97.7 0.00016 3.5E-09 80.7 9.7 58 406-466 627-702 (1172)
174 KOG0953 Mitochondrial RNA heli 97.6 0.00017 3.7E-09 77.7 8.4 100 343-457 356-465 (700)
175 KOG1802 RNA helicase nonsense 97.5 0.00056 1.2E-08 75.2 11.1 76 35-118 409-485 (935)
176 PRK10536 hypothetical protein; 97.5 0.0011 2.5E-08 66.5 11.8 155 35-214 58-217 (262)
177 KOG4150 Predicted ATP-dependen 97.4 0.00061 1.3E-08 73.4 9.0 116 327-456 507-630 (1034)
178 KOG0925 mRNA splicing factor A 97.4 0.0068 1.5E-07 64.7 16.1 64 406-471 310-390 (699)
179 KOG1803 DNA helicase [Replicat 97.3 0.0028 6.2E-08 69.5 13.3 68 31-104 180-248 (649)
180 PF02562 PhoH: PhoH-like prote 97.3 0.002 4.3E-08 63.0 10.6 154 37-215 5-161 (205)
181 PF13604 AAA_30: AAA domain; P 97.2 0.0053 1.2E-07 60.0 12.6 58 36-98 1-58 (196)
182 TIGR00376 DNA helicase, putati 97.1 0.004 8.7E-08 71.8 12.2 76 34-117 155-231 (637)
183 PRK14873 primosome assembly pr 97.0 0.0055 1.2E-07 70.6 12.7 128 64-210 169-304 (665)
184 PF09848 DUF2075: Uncharacteri 97.0 0.0029 6.2E-08 68.0 9.6 48 58-106 4-52 (352)
185 KOG1805 DNA replication helica 97.0 0.052 1.1E-06 62.9 19.3 153 35-211 668-831 (1100)
186 KOG1132 Helicase of the DEAD s 96.9 0.0045 9.7E-08 70.7 9.8 47 28-74 13-59 (945)
187 PF12340 DUF3638: Protein of u 96.8 0.0062 1.4E-07 60.1 9.5 73 33-108 20-92 (229)
188 PF13307 Helicase_C_2: Helicas 96.8 0.004 8.7E-08 59.2 8.0 80 341-438 5-92 (167)
189 PF13401 AAA_22: AAA domain; P 96.8 0.0016 3.5E-08 58.8 4.9 116 55-209 4-125 (131)
190 TIGR01448 recD_rel helicase, p 96.5 0.028 6.2E-07 65.9 13.8 136 33-212 320-455 (720)
191 PRK11747 dinG ATP-dependent DN 96.5 0.025 5.3E-07 66.2 12.9 93 333-439 522-617 (697)
192 TIGR01447 recD exodeoxyribonuc 96.3 0.029 6.3E-07 64.0 11.4 56 39-98 148-205 (586)
193 PRK04296 thymidine kinase; Pro 96.2 0.016 3.5E-07 56.3 7.8 34 58-94 5-38 (190)
194 cd00009 AAA The AAA+ (ATPases 96.1 0.065 1.4E-06 48.5 11.3 41 55-98 19-59 (151)
195 PRK10875 recD exonuclease V su 96.1 0.026 5.7E-07 64.5 10.2 58 37-98 153-211 (615)
196 PRK06526 transposase; Provisio 95.8 0.096 2.1E-06 53.3 11.7 45 55-106 98-142 (254)
197 TIGR03015 pepcterm_ATPase puta 95.8 0.11 2.5E-06 53.2 12.5 58 23-80 10-68 (269)
198 PRK12723 flagellar biosynthesi 95.5 0.13 2.8E-06 55.5 12.0 131 57-226 176-314 (388)
199 smart00382 AAA ATPases associa 95.4 0.05 1.1E-06 48.7 7.4 46 55-103 2-47 (148)
200 TIGR02881 spore_V_K stage V sp 95.4 0.044 9.5E-07 56.2 7.7 40 56-95 43-82 (261)
201 TIGR02768 TraA_Ti Ti-type conj 95.4 0.13 2.9E-06 60.6 12.6 59 34-98 350-408 (744)
202 PRK14956 DNA polymerase III su 95.3 0.13 2.7E-06 56.8 11.1 42 40-81 22-66 (484)
203 PRK11747 dinG ATP-dependent DN 95.2 0.16 3.4E-06 59.6 12.4 61 34-96 23-88 (697)
204 PRK09112 DNA polymerase III su 95.0 0.086 1.9E-06 56.3 8.7 41 41-81 28-71 (351)
205 PRK08181 transposase; Validate 95.0 0.6 1.3E-05 47.9 14.4 47 35-81 86-132 (269)
206 PRK07003 DNA polymerase III su 94.9 0.2 4.3E-06 57.9 11.5 41 41-81 21-64 (830)
207 PLN03025 replication factor C 94.8 0.46 1E-05 50.2 13.4 40 41-80 18-59 (319)
208 PRK07952 DNA replication prote 94.8 0.81 1.8E-05 46.2 14.4 62 39-107 79-144 (244)
209 smart00492 HELICc3 helicase su 94.7 0.2 4.3E-06 46.1 9.0 53 372-438 25-79 (141)
210 PF13245 AAA_19: Part of AAA d 94.6 0.096 2.1E-06 42.6 6.0 50 55-105 10-62 (76)
211 TIGR03420 DnaA_homol_Hda DnaA 94.5 0.26 5.7E-06 49.0 10.2 26 55-80 38-63 (226)
212 TIGR01073 pcrA ATP-dependent D 94.3 2.2 4.7E-05 50.6 18.9 54 36-95 4-58 (726)
213 TIGR02880 cbbX_cfxQ probable R 94.3 0.082 1.8E-06 54.9 6.3 38 56-93 59-97 (284)
214 PRK08116 hypothetical protein; 94.2 0.42 9.2E-06 49.1 11.0 44 55-101 114-157 (268)
215 PRK11889 flhF flagellar biosyn 94.0 0.4 8.6E-06 51.5 10.6 35 57-94 243-277 (436)
216 CHL00181 cbbX CbbX; Provisiona 94.0 0.12 2.7E-06 53.6 6.7 37 57-93 61-98 (287)
217 PRK06835 DNA replication prote 93.9 0.65 1.4E-05 49.2 12.0 47 35-81 159-209 (329)
218 PRK07994 DNA polymerase III su 93.9 0.73 1.6E-05 53.0 13.2 41 41-81 21-64 (647)
219 PRK05707 DNA polymerase III su 93.8 0.45 9.8E-06 50.4 10.7 46 37-82 4-49 (328)
220 PRK08084 DNA replication initi 93.8 0.39 8.4E-06 48.4 9.7 40 41-80 29-70 (235)
221 PRK12323 DNA polymerase III su 93.7 0.55 1.2E-05 53.6 11.6 25 57-81 40-64 (700)
222 PHA02533 17 large terminase pr 93.7 1.1 2.5E-05 50.5 14.3 58 33-95 56-113 (534)
223 smart00491 HELICc2 helicase su 93.7 0.25 5.5E-06 45.5 7.5 54 373-438 23-80 (142)
224 KOG0951 RNA helicase BRR2, DEA 93.7 0.17 3.6E-06 60.4 7.5 108 53-186 1157-1269(1674)
225 COG1875 NYN ribonuclease and A 93.6 0.26 5.5E-06 51.7 8.0 54 40-95 232-285 (436)
226 PRK14949 DNA polymerase III su 93.6 0.62 1.3E-05 55.0 12.0 41 41-81 21-64 (944)
227 PF06862 DUF1253: Protein of u 93.5 1.2 2.5E-05 48.8 13.3 133 334-481 287-426 (442)
228 PRK12402 replication factor C 93.5 0.65 1.4E-05 49.3 11.5 39 42-80 21-61 (337)
229 PRK14961 DNA polymerase III su 93.5 0.7 1.5E-05 49.8 11.7 41 40-80 20-63 (363)
230 COG0553 HepA Superfamily II DN 93.5 0.47 1E-05 57.3 11.6 185 31-231 79-289 (866)
231 PF05621 TniB: Bacterial TniB 93.4 0.74 1.6E-05 47.5 11.0 42 38-79 39-85 (302)
232 PRK14952 DNA polymerase III su 93.4 0.82 1.8E-05 52.2 12.5 42 40-81 17-61 (584)
233 PF00448 SRP54: SRP54-type pro 93.4 0.47 1E-05 46.3 9.2 132 58-224 4-140 (196)
234 PRK14963 DNA polymerase III su 93.2 0.85 1.8E-05 51.2 12.1 42 41-82 19-63 (504)
235 PRK13889 conjugal transfer rel 93.0 0.55 1.2E-05 56.6 10.6 59 34-98 344-402 (988)
236 PRK08727 hypothetical protein; 92.9 0.69 1.5E-05 46.5 9.9 25 57-81 43-67 (233)
237 PRK14962 DNA polymerase III su 92.8 0.61 1.3E-05 52.0 10.2 23 58-80 39-61 (472)
238 PRK14974 cell division protein 92.7 0.68 1.5E-05 49.1 9.9 43 58-103 143-189 (336)
239 PRK06921 hypothetical protein; 92.7 0.59 1.3E-05 48.0 9.2 27 55-81 117-143 (266)
240 PRK14957 DNA polymerase III su 92.4 1.2 2.6E-05 50.3 12.0 41 41-81 21-64 (546)
241 PTZ00112 origin recognition co 92.4 1.5 3.3E-05 51.5 12.7 45 36-80 758-806 (1164)
242 KOG0989 Replication factor C, 92.4 0.46 1E-05 48.7 7.6 41 40-80 40-82 (346)
243 PRK05703 flhF flagellar biosyn 92.4 0.79 1.7E-05 50.4 10.2 57 170-226 299-359 (424)
244 PRK06645 DNA polymerase III su 92.3 0.78 1.7E-05 51.5 10.2 42 40-81 25-69 (507)
245 PF05876 Terminase_GpA: Phage 92.3 0.8 1.7E-05 52.2 10.5 172 28-222 8-192 (557)
246 PRK14087 dnaA chromosomal repl 92.3 0.8 1.7E-05 50.8 10.3 48 57-105 143-190 (450)
247 PRK07764 DNA polymerase III su 92.3 1 2.3E-05 53.5 11.7 24 58-81 40-63 (824)
248 PRK14958 DNA polymerase III su 92.3 1.2 2.6E-05 50.1 11.7 41 41-81 21-64 (509)
249 PRK14960 DNA polymerase III su 92.2 1.4 3.1E-05 50.5 12.0 40 41-80 20-62 (702)
250 TIGR02928 orc1/cdc6 family rep 92.2 0.8 1.7E-05 49.3 9.9 45 37-81 19-66 (365)
251 PF13177 DNA_pol3_delta2: DNA 92.1 1.3 2.8E-05 41.7 10.2 44 41-84 2-48 (162)
252 PRK10917 ATP-dependent DNA hel 92.1 1.5 3.2E-05 51.5 12.7 129 290-437 261-393 (681)
253 PRK14964 DNA polymerase III su 92.1 1.3 2.8E-05 49.4 11.4 25 57-81 37-61 (491)
254 PF13173 AAA_14: AAA domain 92.0 1.2 2.6E-05 40.0 9.4 26 55-80 2-27 (128)
255 PRK07940 DNA polymerase III su 92.0 1.3 2.9E-05 48.1 11.3 25 57-81 38-62 (394)
256 PRK08451 DNA polymerase III su 91.8 1.3 2.9E-05 49.8 11.3 41 41-81 19-62 (535)
257 PRK12377 putative replication 91.7 4.1 8.9E-05 41.3 13.8 43 56-101 102-144 (248)
258 PRK13826 Dtr system oriT relax 91.7 1.2 2.7E-05 54.1 11.5 59 34-98 379-437 (1102)
259 PRK05580 primosome assembly pr 91.5 2.9 6.2E-05 49.0 14.1 124 289-436 143-267 (679)
260 PRK08769 DNA polymerase III su 91.5 2.1 4.6E-05 45.1 11.7 50 33-82 1-53 (319)
261 PRK06871 DNA polymerase III su 91.4 1.9 4.1E-05 45.6 11.3 47 37-83 3-52 (325)
262 PRK00149 dnaA chromosomal repl 91.3 0.99 2.1E-05 50.2 9.6 47 57-104 150-196 (450)
263 PRK14951 DNA polymerase III su 91.2 0.95 2.1E-05 51.9 9.5 41 41-81 21-64 (618)
264 PRK08058 DNA polymerase III su 91.1 2.2 4.7E-05 45.3 11.6 76 40-120 10-88 (329)
265 TIGR00362 DnaA chromosomal rep 91.1 1.1 2.4E-05 49.0 9.8 35 57-92 138-172 (405)
266 PF00580 UvrD-helicase: UvrD/R 91.1 0.33 7.2E-06 50.7 5.4 65 37-107 1-67 (315)
267 KOG0991 Replication factor C, 91.0 0.52 1.1E-05 46.3 6.1 26 55-80 48-73 (333)
268 PRK14088 dnaA chromosomal repl 90.8 4 8.8E-05 45.1 13.8 36 57-93 132-167 (440)
269 PHA02544 44 clamp loader, smal 90.7 2.5 5.4E-05 44.4 11.6 23 57-79 44-67 (316)
270 PRK05986 cob(I)alamin adenolsy 90.3 6.4 0.00014 38.0 12.9 141 54-222 21-170 (191)
271 PRK08691 DNA polymerase III su 90.3 3.3 7.2E-05 47.9 12.6 40 41-80 21-63 (709)
272 PHA03333 putative ATPase subun 90.1 4.3 9.2E-05 46.6 13.1 54 39-95 172-225 (752)
273 PRK07133 DNA polymerase III su 90.1 2.6 5.6E-05 49.1 11.8 40 41-80 23-65 (725)
274 PRK07471 DNA polymerase III su 90.1 2.7 5.8E-05 45.3 11.3 44 40-83 23-69 (365)
275 PF05496 RuvB_N: Holliday junc 89.9 0.6 1.3E-05 46.1 5.6 23 57-79 52-74 (233)
276 PRK06647 DNA polymerase III su 89.9 1.9 4E-05 49.2 10.3 24 58-81 41-64 (563)
277 PRK00411 cdc6 cell division co 89.8 2.6 5.7E-05 45.8 11.3 46 38-83 35-83 (394)
278 PRK05642 DNA replication initi 89.7 1.6 3.4E-05 43.9 8.7 25 56-80 46-70 (234)
279 COG3421 Uncharacterized protei 89.7 0.29 6.2E-06 54.2 3.5 37 61-99 3-40 (812)
280 COG1419 FlhF Flagellar GTP-bin 89.7 2.4 5.2E-05 45.5 10.3 134 55-227 203-341 (407)
281 PTZ00293 thymidine kinase; Pro 89.6 2.4 5.2E-05 41.6 9.5 36 58-96 7-42 (211)
282 TIGR00643 recG ATP-dependent D 89.5 3.1 6.7E-05 48.4 12.1 129 290-437 235-367 (630)
283 PRK14722 flhF flagellar biosyn 89.4 5.8 0.00012 42.7 13.0 39 55-94 137-175 (374)
284 PRK14955 DNA polymerase III su 89.3 4.4 9.5E-05 44.2 12.5 41 41-81 21-64 (397)
285 KOG1133 Helicase of the DEAD s 89.2 0.68 1.5E-05 52.2 5.9 52 28-79 7-59 (821)
286 PRK06090 DNA polymerase III su 89.2 5 0.00011 42.3 12.2 48 36-83 3-53 (319)
287 KOG1131 RNA polymerase II tran 89.1 1 2.2E-05 49.2 6.9 61 36-96 16-76 (755)
288 PRK14950 DNA polymerase III su 89.0 3.3 7.2E-05 47.6 11.7 41 40-80 20-63 (585)
289 PRK14948 DNA polymerase III su 88.9 3 6.5E-05 48.2 11.2 42 40-81 20-64 (620)
290 COG1484 DnaC DNA replication p 88.9 3.7 7.9E-05 41.9 10.7 65 38-105 88-152 (254)
291 PRK14969 DNA polymerase III su 88.8 3.3 7.2E-05 46.9 11.3 23 58-80 41-63 (527)
292 PRK09111 DNA polymerase III su 88.8 3.2 6.9E-05 47.7 11.2 43 40-82 28-73 (598)
293 PRK07993 DNA polymerase III su 88.7 4.1 8.8E-05 43.3 11.3 47 36-82 2-51 (334)
294 TIGR02639 ClpA ATP-dependent C 88.6 2.6 5.7E-05 49.9 10.8 26 55-80 203-228 (731)
295 PRK14959 DNA polymerase III su 88.6 3.9 8.4E-05 46.9 11.6 25 57-81 40-64 (624)
296 PRK06893 DNA replication initi 88.5 2 4.4E-05 43.0 8.5 25 57-81 41-65 (229)
297 PRK00771 signal recognition pa 88.4 5.2 0.00011 44.0 12.2 35 57-94 97-131 (437)
298 PRK05563 DNA polymerase III su 88.4 3.7 8E-05 46.9 11.4 24 58-81 41-64 (559)
299 PRK14086 dnaA chromosomal repl 88.4 4 8.6E-05 46.7 11.4 46 57-103 316-361 (617)
300 PF00004 AAA: ATPase family as 88.4 2.9 6.3E-05 37.1 8.8 35 59-99 2-36 (132)
301 PRK00440 rfc replication facto 88.0 7.8 0.00017 40.5 13.1 40 41-80 22-63 (319)
302 PRK12422 chromosomal replicati 88.0 1.5 3.3E-05 48.5 7.8 34 57-93 143-176 (445)
303 PRK09183 transposase/IS protei 88.0 9 0.0002 39.1 13.0 27 54-80 101-127 (259)
304 TIGR00678 holB DNA polymerase 87.9 5.5 0.00012 38.3 10.9 25 57-81 16-40 (188)
305 PRK14965 DNA polymerase III su 87.9 5.1 0.00011 46.0 12.2 24 58-81 41-64 (576)
306 PRK04195 replication factor C 87.8 6.3 0.00014 44.2 12.7 43 37-79 18-63 (482)
307 PRK08903 DnaA regulatory inact 87.8 3.9 8.4E-05 40.7 10.0 37 54-93 41-77 (227)
308 PRK14953 DNA polymerase III su 87.7 5.3 0.00012 44.7 11.9 41 40-80 20-63 (486)
309 cd01121 Sms Sms (bacterial rad 87.6 1.7 3.8E-05 46.8 7.7 50 56-108 83-132 (372)
310 PRK14954 DNA polymerase III su 87.6 2.9 6.3E-05 48.2 9.9 41 41-81 21-64 (620)
311 COG3267 ExeA Type II secretory 87.6 9.6 0.00021 38.4 12.2 47 57-107 53-105 (269)
312 cd00561 CobA_CobO_BtuR ATP:cor 87.3 4.6 9.9E-05 37.9 9.4 134 58-219 5-147 (159)
313 KOG0737 AAA+-type ATPase [Post 87.2 0.88 1.9E-05 47.8 4.9 50 53-108 125-174 (386)
314 PF00265 TK: Thymidine kinase; 87.2 1.4 3E-05 42.2 6.1 34 59-95 5-38 (176)
315 PRK00080 ruvB Holliday junctio 87.2 6.5 0.00014 41.6 11.8 43 37-79 29-75 (328)
316 COG1474 CDC6 Cdc6-related prot 87.1 8.9 0.00019 41.3 12.8 49 35-83 19-70 (366)
317 PRK05896 DNA polymerase III su 87.1 7.7 0.00017 44.3 12.8 25 57-81 40-64 (605)
318 TIGR03117 cas_csf4 CRISPR-asso 87.1 4.3 9.2E-05 46.8 10.8 98 333-443 458-566 (636)
319 PRK08533 flagellar accessory p 87.0 5.3 0.00012 40.0 10.5 51 54-107 23-73 (230)
320 TIGR00595 priA primosomal prot 86.9 4.5 9.8E-05 45.6 10.8 95 326-435 6-101 (505)
321 PF06733 DEAD_2: DEAD_2; Inte 86.7 0.47 1E-05 45.3 2.5 37 148-184 119-159 (174)
322 PRK13342 recombination factor 86.5 4.3 9.2E-05 44.6 10.3 24 56-79 37-60 (413)
323 COG1435 Tdk Thymidine kinase [ 86.5 2 4.4E-05 41.3 6.6 36 58-96 7-42 (201)
324 COG0470 HolB ATPase involved i 86.5 6.2 0.00013 41.4 11.3 26 58-83 27-52 (325)
325 TIGR03345 VI_ClpV1 type VI sec 86.5 3.7 8E-05 49.4 10.4 40 41-80 192-233 (852)
326 KOG0740 AAA+-type ATPase [Post 86.3 1.2 2.6E-05 48.3 5.6 47 56-108 187-233 (428)
327 KOG0921 Dosage compensation co 86.3 7.8 0.00017 45.4 12.0 27 54-80 392-418 (1282)
328 COG4626 Phage terminase-like p 86.0 9.9 0.00021 42.5 12.5 137 31-197 56-210 (546)
329 TIGR00708 cobA cob(I)alamin ad 85.7 2.6 5.6E-05 40.1 6.9 56 164-220 91-150 (173)
330 cd01120 RecA-like_NTPases RecA 85.7 5.1 0.00011 36.8 9.1 35 58-95 2-36 (165)
331 TIGR00580 mfd transcription-re 85.7 7 0.00015 47.3 12.2 127 291-436 452-582 (926)
332 CHL00206 ycf2 Ycf2; Provisiona 85.7 4.5 9.7E-05 51.6 10.5 41 55-101 1630-1670(2281)
333 TIGR02640 gas_vesic_GvpN gas v 85.5 2.3 4.9E-05 43.6 7.0 50 38-93 4-53 (262)
334 COG2255 RuvB Holliday junction 85.4 1.3 2.7E-05 45.2 4.8 23 57-79 54-76 (332)
335 PRK06731 flhF flagellar biosyn 85.4 6.8 0.00015 40.2 10.3 45 56-103 76-124 (270)
336 PRK11823 DNA repair protein Ra 85.4 2.7 5.9E-05 46.6 8.0 51 56-109 81-131 (446)
337 PHA03372 DNA packaging termina 85.2 3 6.6E-05 46.9 8.1 127 58-208 205-336 (668)
338 TIGR03689 pup_AAA proteasome A 85.0 2.8 6E-05 47.0 7.8 27 54-80 215-241 (512)
339 COG3973 Superfamily I DNA and 84.8 2 4.3E-05 48.0 6.4 50 54-103 225-277 (747)
340 CHL00176 ftsH cell division pr 84.7 6.7 0.00015 45.4 11.1 25 55-79 216-240 (638)
341 PRK12727 flagellar biosynthesi 84.2 22 0.00047 40.1 14.1 38 55-93 350-387 (559)
342 COG1200 RecG RecG-like helicas 83.8 49 0.0011 38.1 16.8 125 290-433 262-390 (677)
343 PRK10416 signal recognition pa 83.8 28 0.00061 36.7 14.4 33 58-93 117-149 (318)
344 PRK10865 protein disaggregatio 83.5 6.3 0.00014 47.5 10.5 40 41-80 183-224 (857)
345 PRK14712 conjugal transfer nic 83.5 7 0.00015 49.6 11.0 65 32-98 831-896 (1623)
346 cd01124 KaiC KaiC is a circadi 83.3 3.1 6.7E-05 39.7 6.6 49 58-109 2-50 (187)
347 TIGR02397 dnaX_nterm DNA polym 83.2 7.8 0.00017 41.4 10.3 40 41-80 19-61 (355)
348 PRK10689 transcription-repair 83.2 11 0.00024 46.8 12.6 124 290-432 600-727 (1147)
349 KOG1807 Helicases [Replication 83.2 5.8 0.00012 45.6 9.2 87 34-126 376-466 (1025)
350 COG4646 DNA methylase [Transcr 83.2 0.62 1.3E-05 49.9 1.7 47 198-244 472-523 (637)
351 cd01128 rho_factor Transcripti 83.2 5 0.00011 40.7 8.2 27 53-79 14-40 (249)
352 PRK11054 helD DNA helicase IV; 83.0 2.7 5.9E-05 49.1 7.0 69 35-109 195-265 (684)
353 COG0003 ArsA Predicted ATPase 82.7 2.2 4.8E-05 44.9 5.6 60 61-123 8-74 (322)
354 PRK13709 conjugal transfer nic 82.7 8.5 0.00018 49.4 11.5 64 33-98 964-1028(1747)
355 PF01695 IstB_IS21: IstB-like 82.5 2.6 5.7E-05 40.4 5.6 47 53-106 45-91 (178)
356 COG1198 PriA Primosomal protei 82.4 10 0.00022 44.4 11.1 109 290-419 198-307 (730)
357 PF07015 VirC1: VirC1 protein; 82.3 7.8 0.00017 38.6 8.9 42 63-107 10-53 (231)
358 COG0464 SpoVK ATPases of the A 82.3 3 6.6E-05 46.9 6.9 69 35-109 248-324 (494)
359 CHL00095 clpC Clp protease ATP 82.2 6.1 0.00013 47.5 9.8 26 55-80 200-225 (821)
360 PF06564 YhjQ: YhjQ protein; 82.0 4.8 0.0001 40.5 7.4 33 63-98 10-44 (243)
361 PRK13341 recombination factor 81.7 4.1 8.8E-05 47.9 7.8 24 56-79 53-76 (725)
362 COG0552 FtsY Signal recognitio 81.5 6.1 0.00013 41.3 8.1 126 58-216 142-276 (340)
363 PRK11034 clpA ATP-dependent Cl 81.5 6.6 0.00014 46.4 9.5 26 55-80 207-232 (758)
364 PRK10919 ATP-dependent DNA hel 81.3 1.9 4.1E-05 50.5 5.0 66 36-107 2-69 (672)
365 PF13481 AAA_25: AAA domain; P 81.2 7.5 0.00016 37.3 8.5 65 45-109 21-93 (193)
366 TIGR00635 ruvB Holliday juncti 81.2 5.4 0.00012 41.6 8.0 24 56-79 31-54 (305)
367 PF00308 Bac_DnaA: Bacterial d 81.0 11 0.00024 37.4 9.7 26 57-82 36-61 (219)
368 COG2256 MGS1 ATPase related to 81.0 1.5 3.2E-05 46.7 3.5 24 56-79 49-72 (436)
369 COG0541 Ffh Signal recognition 80.8 12 0.00027 40.5 10.3 58 58-118 103-160 (451)
370 PHA03368 DNA packaging termina 80.8 6.3 0.00014 45.1 8.5 128 56-208 255-389 (738)
371 PRK14873 primosome assembly pr 80.7 8.5 0.00018 44.8 9.9 66 327-392 170-237 (665)
372 KOG0952 DNA/RNA helicase MER3/ 80.6 1.4 3E-05 52.1 3.4 110 55-185 943-1061(1230)
373 PRK06964 DNA polymerase III su 80.3 20 0.00044 38.1 11.9 47 37-83 2-49 (342)
374 PF01443 Viral_helicase1: Vira 80.2 2.7 5.9E-05 41.8 5.1 42 170-215 62-103 (234)
375 PRK06067 flagellar accessory p 80.2 6 0.00013 39.6 7.6 52 55-109 25-76 (234)
376 TIGR03346 chaperone_ClpB ATP-d 79.8 11 0.00024 45.5 10.8 40 41-80 178-219 (852)
377 KOG0739 AAA+-type ATPase [Post 79.8 11 0.00024 38.7 9.0 47 57-109 168-214 (439)
378 PRK06305 DNA polymerase III su 79.8 16 0.00034 40.6 11.3 41 41-81 22-65 (451)
379 TIGR01243 CDC48 AAA family ATP 79.6 2.8 6.1E-05 49.7 5.7 41 55-101 487-527 (733)
380 TIGR03499 FlhF flagellar biosy 79.5 6.3 0.00014 40.8 7.6 36 57-93 196-231 (282)
381 TIGR03878 thermo_KaiC_2 KaiC d 79.3 15 0.00032 37.5 10.2 36 56-94 37-72 (259)
382 PRK14970 DNA polymerase III su 79.3 5.2 0.00011 43.1 7.2 41 40-80 21-64 (367)
383 TIGR00767 rho transcription te 79.2 9.4 0.0002 41.3 8.9 27 54-80 167-193 (415)
384 PRK13833 conjugal transfer pro 78.8 5 0.00011 42.3 6.7 41 37-80 129-169 (323)
385 TIGR02760 TraI_TIGR conjugativ 78.3 16 0.00034 48.2 12.1 63 34-98 1017-1080(1960)
386 TIGR01075 uvrD DNA helicase II 78.0 5.5 0.00012 47.1 7.5 68 36-109 4-73 (715)
387 COG0593 DnaA ATPase involved i 78.0 9.2 0.0002 41.5 8.4 40 170-209 175-219 (408)
388 TIGR01243 CDC48 AAA family ATP 77.7 9.3 0.0002 45.4 9.3 37 55-97 212-248 (733)
389 TIGR01425 SRP54_euk signal rec 77.6 50 0.0011 36.3 14.1 34 58-94 103-136 (429)
390 PRK07399 DNA polymerase III su 77.6 24 0.00053 37.1 11.4 42 41-82 9-53 (314)
391 PRK13849 putative crown gall t 77.4 12 0.00027 37.4 8.8 38 63-103 10-49 (231)
392 TIGR01241 FtsH_fam ATP-depende 77.1 6.7 0.00014 44.2 7.5 25 55-79 88-112 (495)
393 PRK14971 DNA polymerase III su 77.1 37 0.0008 39.3 13.6 40 41-80 22-64 (614)
394 cd01122 GP4d_helicase GP4d_hel 76.8 15 0.00033 37.4 9.6 52 52-105 27-78 (271)
395 PRK09376 rho transcription ter 76.8 14 0.0003 40.0 9.2 28 54-81 168-195 (416)
396 KOG1942 DNA helicase, TBP-inte 76.7 3.8 8.3E-05 41.8 4.7 49 51-106 60-108 (456)
397 PRK11773 uvrD DNA-dependent he 76.7 6.8 0.00015 46.4 7.8 67 36-108 9-77 (721)
398 PRK05973 replicative DNA helic 76.6 6.5 0.00014 39.5 6.4 54 52-108 61-114 (237)
399 PRK05564 DNA polymerase III su 76.6 22 0.00047 37.4 10.8 24 57-80 28-51 (313)
400 PRK07276 DNA polymerase III su 76.4 28 0.0006 36.2 11.2 47 36-83 2-50 (290)
401 PF03354 Terminase_1: Phage Te 76.1 24 0.00053 39.5 11.6 57 39-95 1-63 (477)
402 PRK10867 signal recognition pa 75.9 14 0.00029 40.8 9.2 35 58-94 103-137 (433)
403 PRK04132 replication factor C 75.6 14 0.00029 44.2 9.6 47 170-219 630-679 (846)
404 PRK08939 primosomal protein Dn 75.3 9.4 0.0002 40.0 7.6 35 55-92 156-190 (306)
405 TIGR00064 ftsY signal recognit 75.3 30 0.00065 35.6 11.1 34 58-94 75-108 (272)
406 COG1222 RPT1 ATP-dependent 26S 74.9 21 0.00045 37.9 9.6 58 38-101 156-225 (406)
407 TIGR00682 lpxK tetraacyldisacc 74.9 12 0.00027 39.2 8.3 104 63-184 38-153 (311)
408 PF02606 LpxK: Tetraacyldisacc 74.6 13 0.00028 39.4 8.4 127 65-213 47-192 (326)
409 TIGR02760 TraI_TIGR conjugativ 74.6 33 0.00072 45.2 13.6 60 34-98 427-486 (1960)
410 TIGR01074 rep ATP-dependent DN 74.3 6.3 0.00014 46.2 6.6 67 37-109 2-70 (664)
411 PF05970 PIF1: PIF1-like helic 73.7 7.6 0.00016 41.8 6.6 60 36-98 1-62 (364)
412 KOG0780 Signal recognition par 73.5 19 0.00041 38.5 8.9 97 59-188 105-201 (483)
413 PRK12724 flagellar biosynthesi 73.4 27 0.00058 38.2 10.5 22 58-79 226-247 (432)
414 PRK13894 conjugal transfer ATP 73.3 8.5 0.00018 40.6 6.6 33 47-79 140-172 (319)
415 TIGR02655 circ_KaiC circadian 73.2 8.8 0.00019 43.1 7.2 52 55-109 263-314 (484)
416 PRK08760 replicative DNA helic 72.8 9.7 0.00021 42.6 7.3 52 55-108 229-280 (476)
417 TIGR02782 TrbB_P P-type conjug 72.7 8.8 0.00019 40.1 6.5 35 46-80 123-157 (299)
418 PF00437 T2SE: Type II/IV secr 72.5 5 0.00011 41.1 4.7 34 47-80 119-152 (270)
419 TIGR00150 HI0065_YjeE ATPase, 72.5 8.8 0.00019 34.8 5.6 33 48-80 15-47 (133)
420 TIGR00416 sms DNA repair prote 72.5 9.3 0.0002 42.4 7.0 49 57-108 96-144 (454)
421 PF06068 TIP49: TIP49 C-termin 72.4 5.3 0.00011 42.5 4.7 60 32-97 25-88 (398)
422 PF05127 Helicase_RecD: Helica 72.4 3.3 7.1E-05 39.6 3.0 34 60-95 2-35 (177)
423 PF06745 KaiC: KaiC; InterPro 72.4 8.1 0.00018 38.4 6.0 53 55-109 19-71 (226)
424 COG1702 PhoH Phosphate starvat 71.9 11 0.00025 39.4 7.0 43 169-214 242-284 (348)
425 TIGR01547 phage_term_2 phage t 71.3 22 0.00048 38.7 9.7 38 58-95 4-41 (396)
426 PRK08699 DNA polymerase III su 71.1 46 0.001 35.2 11.6 45 37-81 2-47 (325)
427 PRK09087 hypothetical protein; 71.0 25 0.00053 35.1 9.1 37 172-208 89-125 (226)
428 cd01129 PulE-GspE PulE/GspE Th 70.8 7.3 0.00016 39.9 5.4 44 35-80 62-105 (264)
429 COG1066 Sms Predicted ATP-depe 70.5 21 0.00046 38.5 8.6 86 58-184 96-182 (456)
430 PRK14723 flhF flagellar biosyn 70.4 24 0.00052 41.6 9.9 24 58-81 188-211 (767)
431 PRK12726 flagellar biosynthesi 70.3 23 0.00049 38.3 8.9 44 57-103 208-255 (407)
432 PRK06995 flhF flagellar biosyn 70.2 22 0.00047 39.7 9.1 26 58-83 259-284 (484)
433 PRK14721 flhF flagellar biosyn 70.1 34 0.00073 37.5 10.5 23 57-79 193-215 (420)
434 KOG1133 Helicase of the DEAD s 69.8 24 0.00052 40.4 9.2 85 346-439 630-721 (821)
435 cd01130 VirB11-like_ATPase Typ 69.3 13 0.00027 35.8 6.4 41 36-79 9-49 (186)
436 PF12846 AAA_10: AAA-like doma 69.2 9.7 0.00021 39.2 6.0 47 55-104 1-47 (304)
437 COG0467 RAD55 RecA-superfamily 69.2 13 0.00028 37.8 6.9 54 53-109 21-74 (260)
438 PRK05595 replicative DNA helic 69.0 12 0.00026 41.5 7.0 50 55-106 201-250 (444)
439 cd03115 SRP The signal recogni 68.9 44 0.00095 31.4 10.0 25 58-82 3-27 (173)
440 cd02034 CooC The accessory pro 68.8 56 0.0012 28.8 9.9 47 58-109 2-48 (116)
441 PRK13900 type IV secretion sys 68.5 11 0.00023 40.1 6.1 34 46-79 151-184 (332)
442 COG2812 DnaX DNA polymerase II 68.5 13 0.00029 41.6 7.0 43 41-83 21-66 (515)
443 KOG0726 26S proteasome regulat 68.2 28 0.0006 35.8 8.5 23 54-76 218-240 (440)
444 TIGR03880 KaiC_arch_3 KaiC dom 68.0 15 0.00033 36.3 6.9 52 55-109 16-67 (224)
445 TIGR02030 BchI-ChlI magnesium 67.7 24 0.00052 37.5 8.6 25 55-79 25-49 (337)
446 COG3972 Superfamily I DNA and 67.5 31 0.00067 38.0 9.2 45 64-109 185-230 (660)
447 PRK07414 cob(I)yrinic acid a,c 67.3 74 0.0016 30.4 10.9 51 165-216 110-164 (178)
448 KOG0738 AAA+-type ATPase [Post 67.2 7.2 0.00016 41.6 4.3 47 56-108 246-292 (491)
449 COG1224 TIP49 DNA helicase TIP 67.0 11 0.00023 39.9 5.4 64 25-92 33-98 (450)
450 PRK09165 replicative DNA helic 66.9 18 0.00039 40.7 7.9 50 57-106 219-280 (497)
451 PF00158 Sigma54_activat: Sigm 66.6 28 0.00061 32.9 8.0 49 50-101 17-65 (168)
452 TIGR00665 DnaB replicative DNA 66.3 20 0.00043 39.6 8.0 49 55-105 195-243 (434)
453 TIGR03877 thermo_KaiC_1 KaiC d 66.1 16 0.00036 36.6 6.8 52 54-108 20-71 (237)
454 PHA02244 ATPase-like protein 65.9 28 0.00061 37.3 8.6 34 53-92 117-150 (383)
455 TIGR00365 monothiol glutaredox 65.7 51 0.0011 28.0 8.7 47 345-391 11-63 (97)
456 PRK03992 proteasome-activating 65.3 9.3 0.0002 41.6 5.1 40 55-100 165-204 (389)
457 COG3598 RepA RecA-family ATPas 65.0 16 0.00035 38.1 6.2 24 53-76 87-110 (402)
458 KOG0733 Nuclear AAA ATPase (VC 64.9 58 0.0012 37.1 10.8 59 55-119 223-289 (802)
459 TIGR03881 KaiC_arch_4 KaiC dom 64.8 18 0.00039 35.9 6.7 51 54-107 19-69 (229)
460 PRK12608 transcription termina 64.6 36 0.00079 36.6 9.1 28 54-81 132-159 (380)
461 PRK13531 regulatory ATPase Rav 64.1 11 0.00023 41.9 5.2 38 42-79 26-63 (498)
462 cd03028 GRX_PICOT_like Glutare 64.1 39 0.00084 28.1 7.6 45 345-389 7-57 (90)
463 PTZ00454 26S protease regulato 64.0 11 0.00023 41.2 5.2 42 54-101 178-219 (398)
464 TIGR00959 ffh signal recogniti 63.7 34 0.00074 37.6 9.0 23 58-80 102-124 (428)
465 PRK13766 Hef nuclease; Provisi 62.9 2.1E+02 0.0045 34.2 16.4 96 324-437 36-141 (773)
466 PRK11331 5-methylcytosine-spec 62.9 17 0.00037 40.0 6.4 37 44-80 183-219 (459)
467 PHA00350 putative assembly pro 62.3 11 0.00024 40.9 4.8 17 59-75 5-21 (399)
468 TIGR02533 type_II_gspE general 62.1 11 0.00023 42.4 4.9 42 35-79 224-266 (486)
469 PRK00652 lpxK tetraacyldisacch 61.9 44 0.00095 35.4 9.1 124 64-207 60-200 (325)
470 PRK10263 DNA translocase FtsK; 61.8 62 0.0013 40.3 11.3 41 56-96 1011-1052(1355)
471 COG2842 Uncharacterized ATPase 61.7 23 0.00049 36.6 6.6 31 47-77 86-116 (297)
472 COG2804 PulE Type II secretory 61.3 13 0.00029 41.0 5.3 42 36-80 241-283 (500)
473 TIGR01242 26Sp45 26S proteasom 61.1 25 0.00054 37.8 7.4 25 55-79 156-180 (364)
474 PHA00012 I assembly protein 60.8 25 0.00054 37.0 6.8 22 59-80 5-26 (361)
475 PF02572 CobA_CobO_BtuR: ATP:c 60.8 49 0.0011 31.5 8.4 47 164-211 90-140 (172)
476 KOG2543 Origin recognition com 60.0 2.5E+02 0.0055 30.3 14.6 57 35-97 8-66 (438)
477 TIGR02785 addA_Gpos recombinat 59.6 21 0.00046 45.0 7.3 59 37-101 2-60 (1232)
478 PRK10646 ADP-binding protein; 59.6 25 0.00053 32.8 6.0 27 55-81 28-54 (153)
479 PF04364 DNA_pol3_chi: DNA pol 59.2 22 0.00048 32.4 5.6 38 331-368 15-52 (137)
480 PF01580 FtsK_SpoIIIE: FtsK/Sp 59.0 16 0.00035 35.6 5.0 40 55-94 38-77 (205)
481 smart00763 AAA_PrkA PrkA AAA d 58.4 32 0.00068 36.8 7.3 45 37-81 56-104 (361)
482 PRK13851 type IV secretion sys 58.4 15 0.00032 39.3 4.9 34 46-79 153-186 (344)
483 PRK10436 hypothetical protein; 58.2 17 0.00037 40.4 5.6 43 35-79 200-242 (462)
484 PF02367 UPF0079: Uncharacteri 57.7 14 0.00031 33.0 4.0 33 48-80 8-40 (123)
485 PRK04328 hypothetical protein; 57.6 27 0.00059 35.3 6.6 51 55-108 23-73 (249)
486 COG0626 MetC Cystathionine bet 57.6 27 0.00059 37.9 6.8 89 328-453 85-174 (396)
487 PLN00020 ribulose bisphosphate 57.4 9 0.0002 41.0 3.0 46 55-106 148-193 (413)
488 TIGR00763 lon ATP-dependent pr 57.2 53 0.0012 39.3 9.9 24 56-79 348-371 (775)
489 CHL00195 ycf46 Ycf46; Provisio 57.1 11 0.00023 42.3 3.8 36 55-96 259-294 (489)
490 PRK14701 reverse gyrase; Provi 56.8 85 0.0018 40.7 11.9 103 291-418 80-188 (1638)
491 PF05729 NACHT: NACHT domain 56.7 17 0.00036 33.5 4.6 29 58-86 3-31 (166)
492 COG1223 Predicted ATPase (AAA+ 56.4 15 0.00032 37.2 4.1 39 55-99 151-189 (368)
493 PF02456 Adeno_IVa2: Adenoviru 55.5 27 0.00058 36.3 5.9 97 58-181 90-207 (369)
494 TIGR00614 recQ_fam ATP-depende 55.4 1.2E+02 0.0026 33.9 11.9 104 289-420 10-113 (470)
495 KOG0733 Nuclear AAA ATPase (VC 55.0 24 0.00052 39.9 5.9 47 55-107 545-591 (802)
496 PTZ00361 26 proteosome regulat 54.9 22 0.00047 39.3 5.7 40 54-99 216-255 (438)
497 KOG2028 ATPase related to the 54.9 34 0.00073 36.4 6.6 23 57-79 164-186 (554)
498 cd00984 DnaB_C DnaB helicase C 54.7 18 0.00038 36.2 4.7 43 52-96 10-52 (242)
499 PF07726 AAA_3: ATPase family 54.3 12 0.00025 33.8 2.8 22 58-79 2-23 (131)
500 TIGR00764 lon_rel lon-related 54.3 26 0.00057 40.5 6.4 41 40-80 22-62 (608)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.8e-112 Score=903.91 Aligned_cols=591 Identities=41% Similarity=0.636 Sum_probs=497.4
Q ss_pred cCcCCc-CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 29 AEFGVT-AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 29 ~p~~~~-~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
+|..++ +.|+|||++|++||+..|.+|.|||||||||||||+|+|+++.+++...+.+||+||+||+|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 677777 9999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc
Q 005858 108 FTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 108 ~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s 187 (673)
|+|++++++|+|++..|..+++.++. ...|+|+||||+++.++...|..+.|.|+|||||||+||.+|
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~------------~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s 306 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIML------------PGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKS 306 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhc------------cCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhh
Confidence 99999999999999999988887653 347999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
.+++.++. +.+.+|++|||||+|||+.|||+||+||.|++|++.+.|..||..... .+..+.+.+||.+++|
T Consensus 307 ~L~~~lr~-f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~-------~~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 307 KLSKILRE-FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC-------EGDQELVSRLHKVLRP 378 (971)
T ss_pred HHHHHHHH-hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc-------ccCHHHHHHHHhhhhH
Confidence 99999997 999999999999999999999999999999999999999999987532 1223478899999999
Q ss_pred HHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhHHHHHhhc--------------cccccccccccc-
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLALS--------------SRTANHQSLQNT- 326 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~~~l~~~~--------------~~~~~~~~l~~~- 326 (673)
|++||+|.+|..+ |||+.| |+.+|+++|+.++.+.+..+.... ...++||.|...
T Consensus 379 FlLRR~K~dVe~s----LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 379 FLLRRIKSDVEKS----LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred HHHHHHHHhHhhc----CCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 9999999999885 999887 466999999999988776554333 346777776432
Q ss_pred --------------cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 327 --------------ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 327 --------------~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
.||||.+|+++|..+.+.|+||||||||+.++|+|++||..++|.|+||||+++.++|..+|+.||
T Consensus 455 ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 455 EPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred CCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHH
Q 005858 393 VQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEE 472 (673)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe 472 (673)
.+ ++..+|||+||+|||+||||++||+||+||++|||+.++||++|||||||+|+|.||||++++||||
T Consensus 535 ~~-----------~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 535 AP-----------PSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred CC-----------CcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 88 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHh-hcccc-cCCcccCccccchhhhhhHHhhHHHHHhhhhh
Q 005858 473 VIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLHL-FDPKAINNEESDDLRLSGLNSMVEKVIAMRHE 550 (673)
Q Consensus 473 ~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~-~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 550 (673)
+|++|+..|++|.+.||+++...... ......+++.+|+ ||+.. |...+.+-.+ +++.+....+.-..+.
T Consensus 604 ~IveRA~~KL~Ld~~VIq~g~l~~~~--~~~~~k~~~l~~~r~g~~~~f~~~es~~~d----Did~il~~~e~kt~e~-- 675 (971)
T KOG0385|consen 604 KIVERAAAKLRLDKLVIQQGRLEEQK--SNGLGKDELLNLLRFGADPVFESKESTISD----DIDRILERGEEKTAEL-- 675 (971)
T ss_pred HHHHHHHHHhchhhhhhccCchhhhh--ccccchHHHHHHHHcCchhhhhhcccccch----hHHHHHHhhhhhccCc--
Confidence 99999999999999999998544332 2335677887774 88754 4333222111 2333222222111111
Q ss_pred ccccccCcccccCcchhcccccccccccccccccC-CCCchhHHhh-HHHhhHhhhhccccccccc---ccC--------
Q 005858 551 QVSGKAGRKFEVNPVALLEESDLLMHESFASATSY-PDLDEASYRS-WVEKFKEASESSSNTIAES---GRR-------- 617 (673)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~-------- 617 (673)
......+..+. ...-+....+.++ .+.++..+.+ |+++.|+.+...+....+. +++
T Consensus 676 ---~~~~~~~~~~~--------~~~~~~~~~y~~eG~d~~ek~~~~~wiep~krerk~~d~y~r~~l~~g~~~P~~~~~~ 744 (971)
T KOG0385|consen 676 ---NAKEAKLGESD--------LRNFGMISVYNFEGEDYKEKQSLFKWIEPPKRERKANDAYFREALRVGEPPPKQPEVQ 744 (971)
T ss_pred ---chHHHhhCcch--------hhhcCcceeeccCCcchhhhhhhhhhcCCchhhhhhhhhHHHHHHhcCCCCCCCcccc
Confidence 11111111111 1111113344444 5566777775 8888887776664433333 322
Q ss_pred ------CC-hHHHHhHHHHHHHHHHHHHHhhHHhcCcceeeecCCCCCCCCCCCCCCCccccC
Q 005858 618 ------RS-PEDKQRKLEAARRKAEEKKLAKWEANGYQSLSVKTPVCSPGGDMMSDSGSVQFV 673 (673)
Q Consensus 618 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (673)
+. .|.+.++.+..||++|++|++-|+.+++..+..|.+..+-+.++.++-++++||
T Consensus 745 d~qf~p~~L~el~~kei~~~~k~~e~~kin~~~~lt~ee~~~k~~ll~~gft~w~k~df~~fi 807 (971)
T KOG0385|consen 745 DFQFFPKRLFELLEKEIEYYRKTIEQKKINNAEPLTQEEEEEKEELLSQGFTNWTKRDFNQFI 807 (971)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHhhhhhhhhccccchhhhhHHHHH
Confidence 23 678888999999999999999999999999999999999999999999999885
No 2
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.6e-99 Score=842.32 Aligned_cols=480 Identities=45% Similarity=0.757 Sum_probs=436.1
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
++.-..+||+||++|++||+..|+++.+||||||||||||+|+++++.++......+||+|||+|.|++.+|++||..|+
T Consensus 364 ~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~ 443 (1373)
T KOG0384|consen 364 EYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT 443 (1373)
T ss_pred cccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh
Confidence 34445899999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~ 189 (673)
.+++++|+|+...|.-+++..+-.- ......+|+++||||+++.++...|..++|.+++||||||+||..+.+
T Consensus 444 -~mn~i~y~g~~~sr~~i~~ye~~~~------~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l 516 (1373)
T KOG0384|consen 444 -DMNVIVYHGNLESRQLIRQYEFYHS------SNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKL 516 (1373)
T ss_pred -hhceeeeecchhHHHHHHHHHheec------CCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHH
Confidence 9999999999999998888654331 113556899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q 005858 190 YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269 (673)
Q Consensus 190 ~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 269 (673)
+..+.. +...+|+++||||+||++.|||+|+|||+|+.|.+++.|...|.. ...+.+..|+..++|||
T Consensus 517 ~~~l~~-f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-----------~~e~~~~~L~~~L~P~~ 584 (1373)
T KOG0384|consen 517 YESLNQ-FKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-----------ETEEQVRKLQQILKPFL 584 (1373)
T ss_pred HHHHHH-hcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-----------hhHHHHHHHHHHhhHHH
Confidence 999886 999999999999999999999999999999999999999998833 23567899999999999
Q ss_pred hhhhhhhhhhcCCccCCCcc------cccHHHHHHHHHHHhhhHHHHHhhcc--------------ccccccccccc---
Q 005858 270 LRRTKQKLVECGHLMLPPLT------EITVLQKKVYASILRKELPKLLALSS--------------RTANHQSLQNT--- 326 (673)
Q Consensus 270 lrr~k~~v~~~~~~~lp~~~------e~~~~Q~~~y~~~l~~~~~~l~~~~~--------------~~~~~~~l~~~--- 326 (673)
+||.++||.++ ||++. +|+.+|+++|+.|+.+++..|..... .+|+|+.|.+.
T Consensus 585 lRr~kkdveks----lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee 660 (1373)
T KOG0384|consen 585 LRRLKKDVEKS----LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEE 660 (1373)
T ss_pred HHHHHhhhccC----CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHH
Confidence 99999999885 99875 47889999999999999887765543 35677776332
Q ss_pred --------------------cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHH
Q 005858 327 --------------------ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFA 386 (673)
Q Consensus 327 --------------------~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~ 386 (673)
+|||+.+|++||.++.+.||||||||||+.|||+|++||..++|+|.||||+++.+-|++
T Consensus 661 ~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~ 740 (1373)
T KOG0384|consen 661 KILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQ 740 (1373)
T ss_pred HHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEec
Q 005858 387 AIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466 (673)
Q Consensus 387 ~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~ 466 (673)
+|++||.+ +++.||||+||+|||+||||++|||||+||++|||++++||++|||||||++.|.|||||+
T Consensus 741 AIDhFnap-----------~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVT 809 (1373)
T KOG0384|consen 741 AIDHFNAP-----------DSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVT 809 (1373)
T ss_pred HHHhccCC-----------CCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEec
Confidence 99999988 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHh-hccc-ccCCcccCccccchhhhhhHHhhHHH
Q 005858 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-LFDPKAINNEESDDLRLSGLNSMVEK 543 (673)
Q Consensus 467 ~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~-~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (673)
++|+||.|++++..|+.|.++||+.........+...++.+||.+|+ ||++ +|..++......+++++++|....+.
T Consensus 810 k~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 810 KNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred CCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 99999999999999999999999988764555556678999999996 9996 67776666667778888877665544
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.6e-89 Score=732.18 Aligned_cols=461 Identities=35% Similarity=0.582 Sum_probs=398.2
Q ss_pred cccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 27 ~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
...|..+...|+|||++||+||++.+.++.||||+||||||||+|+|+|++.+...+...+|+|||||.+++.||.+||.
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 44577777899999999999999999999999999999999999999999999888677799999999999999999999
Q ss_pred HHCCCCeEEEEeCChHHHH-HHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc
Q 005858 107 KFTPKLEVLRYVGEREQRR-NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 107 k~~p~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
+|+|.++|.+++|.....+ ....... .............-.++||||+.++.....+..+.|+|+|+||+|+|||+
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~---~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSH---KKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhh---hhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCC
Confidence 9999999999999876311 0000000 00000011122345799999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCc-----chhhhHHHHHHH
Q 005858 186 SSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSA-----PKRGKIKEQFTS 260 (673)
Q Consensus 186 ~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~-----~~~~~~~~~~~~ 260 (673)
+++.+.++.. +++.+|++||||||||++.|||+|+.|+.|+.+++...|.+.|..++..... .......++...
T Consensus 353 ns~islackk-i~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 353 NSKISLACKK-IRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred ccHHHHHHHh-ccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 9999999997 9999999999999999999999999999999999999999999999875432 233445578888
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhH-HHHHh----------hcccccccccc
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKEL-PKLLA----------LSSRTANHQSL 323 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~-~~l~~----------~~~~~~~~~~l 323 (673)
|+.+++||+|||+|.++.. +.||.+.| +++.|+.+|+.++.... ..+.. .....|+||.+
T Consensus 432 Lr~lI~PylLRR~K~dv~~---~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKG---LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHhHHHHHHHHHHHhhh---ccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 9999999999999999966 46888765 68899999999886532 22221 22345777766
Q ss_pred ccc----------------cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH-hCCCcEEEEeCCcCHHHHHH
Q 005858 324 QNT----------------ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE-LRKYSYERLDGSIRAEERFA 386 (673)
Q Consensus 324 ~~~----------------~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~-~~g~~~~~i~G~~~~~~R~~ 386 (673)
... .|||+.++..++..+...|+|||+|+|...|+|+|+.+|. ..||.|+++||.++...|+.
T Consensus 509 l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 509 LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred ccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 432 6899999999999999999999999999999999999999 78999999999999999999
Q ss_pred HHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEec
Q 005858 387 AIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT 466 (673)
Q Consensus 387 ~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~ 466 (673)
+|++||++ ...+|||++|++||.|+||++||+||+|||+|||+.+.||..|+||+||+|.|.||||++
T Consensus 589 lVd~Fne~------------~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 589 LVDRFNED------------ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred HHHhhcCC------------CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 99999976 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHH
Q 005858 467 EHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSI 512 (673)
Q Consensus 467 ~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~ 512 (673)
.|||||.||.+|..|..|.+.++.+....+ .+...||..+
T Consensus 657 ~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~R------fF~~~dl~dL 696 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLTNRILKNPEQRR------FFKGNDLHDL 696 (923)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCHHHhh------hcccccHHHH
Confidence 999999999999999999999998765443 3455566665
No 4
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=9.4e-89 Score=744.51 Aligned_cols=456 Identities=37% Similarity=0.630 Sum_probs=411.3
Q ss_pred cccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 27 ~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
...|..+.+.||.||+.|++||...|.++.|||||||||||||+|+|+++++|....+.+||.|||||.+++.||.-||+
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 45588889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 107 KFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 107 k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
+|||.++++.|.|+...+...|+.|. ++..|+|.||||..+..+...|....|.|+|+||||++||..
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~------------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfk 753 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWA------------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFK 753 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhccc------------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchh
Confidence 99999999999999999888877553 456799999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
|++++++.+ +.+.+||+|||||+||++.|||+||+||+|..|.+.+.|..||.++.........+-....+.+||++++
T Consensus 754 sqrWQAlln-fnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlr 832 (1958)
T KOG0391|consen 754 SQRWQALLN-FNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLR 832 (1958)
T ss_pred HHHHHHHhc-cchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhH
Confidence 999999997 9999999999999999999999999999999999999999999998876555555555677899999999
Q ss_pred HHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhh-------------HHHHHhhccccccccccccc-
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKE-------------LPKLLALSSRTANHQSLQNT- 326 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~-------------~~~l~~~~~~~~~~~~l~~~- 326 (673)
||+|||+|.||.+. +|.+.| ++..|+.+|..++... +..++-.....|+|+.|...
T Consensus 833 PfiLRRlK~dVEKQ----lpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpR 908 (1958)
T KOG0391|consen 833 PFILRRLKRDVEKQ----LPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPR 908 (1958)
T ss_pred HHHHHHHHHHHHHh----cchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCC
Confidence 99999999999985 888765 4568999999887531 11122223455666655221
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 909 pv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g 988 (1958)
T KOG0391|consen 909 PVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAG 988 (1958)
T ss_pred CCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 989 ~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~ 1068 (1958)
T KOG0391|consen 989 APFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQ 1068 (1958)
T ss_pred cccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 1069 pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~AP 1148 (1958)
T KOG0391|consen 1069 PLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAP 1148 (1958)
T ss_pred ccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 1149 vyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ql 1228 (1958)
T KOG0391|consen 1149 VYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQL 1228 (1958)
T ss_pred ccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHH
Confidence
Q ss_pred -----------------------------cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeC
Q 005858 327 -----------------------------ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDG 377 (673)
Q Consensus 327 -----------------------------~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G 377 (673)
.+||+..|.-+|.+++..|||||||+||+.|||+|+.+|..+||.|+||||
T Consensus 1229 rsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg 1308 (1958)
T KOG0391|consen 1229 RSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDG 1308 (1958)
T ss_pred HHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecC
Confidence 799999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcC
Q 005858 378 SIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 378 ~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
.++.++|+.++++||.+ ..++|||+||+.||+||||++||+|||||++|||..+.||.+|||||||++
T Consensus 1309 ~t~vEqRQaLmerFNaD------------~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtR 1376 (1958)
T KOG0391|consen 1309 NTSVEQRQALMERFNAD------------RRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 1376 (1958)
T ss_pred CccHHHHHHHHHHhcCC------------CceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCcc
Confidence 99999999999999988 889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHhhccc
Q 005858 458 HVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLH 517 (673)
Q Consensus 458 ~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~~g~~ 517 (673)
+|+|||||.+.||||+|+.++..|..|.+.+++++.+.-. .+...+++.+ |+.+
T Consensus 1377 DVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~-----ff~q~ti~dL-Fd~~ 1430 (1958)
T KOG0391|consen 1377 DVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTA-----FFKQRTIRDL-FDVY 1430 (1958)
T ss_pred ceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHH-----HHhhhhHHHH-hcCC
Confidence 9999999999999999999999999999999999877543 2344455544 5553
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=9.3e-87 Score=769.77 Aligned_cols=460 Identities=41% Similarity=0.694 Sum_probs=405.2
Q ss_pred CCCccccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHH
Q 005858 23 QTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWV 102 (673)
Q Consensus 23 ~~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~ 102 (673)
.+.+..+|..+.++|+|||++|++||+..+.++.||||||+||||||+|+|+++.++....+..+|+|||||++++.||.
T Consensus 156 ~~~l~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 156 GTRLLVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred CceeccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999987777889999999999999999
Q ss_pred HHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccc
Q 005858 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 103 ~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~ 182 (673)
+||.+|+|.++++.|+|+...+..++.... ....++|+||||+++.++...+..+.|++|||||||++
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~------------~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL------------VAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh------------cccCCCcceecHHHHHHHHHHhccCCCCEEEEcCcccc
Confidence 999999999999999999887765544322 23468999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHH
Q 005858 183 KNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLK 262 (673)
Q Consensus 183 KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~ 262 (673)
||..+.+++++.. +.+++||+|||||++|++.|||++++||.|+.|++...|..+|.... .....+.+..|+
T Consensus 304 KN~~Sklskalr~-L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~-------~~~~~e~i~~L~ 375 (1033)
T PLN03142 304 KNENSLLSKTMRL-FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISG-------ENDQQEVVQQLH 375 (1033)
T ss_pred CCHHHHHHHHHHH-hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccc-------ccchHHHHHHHH
Confidence 9999999999986 89999999999999999999999999999999999999999997632 122345678899
Q ss_pred HHHHHHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhHHHHH------------hhccccccccccc
Q 005858 263 GILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLL------------ALSSRTANHQSLQ 324 (673)
Q Consensus 263 ~~l~~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~~~l~------------~~~~~~~~~~~l~ 324 (673)
.+++||++||++.++.. .+||+.+ +++.|+.+|..++......+. ......++||.+.
T Consensus 376 ~~L~pf~LRR~KsdV~~----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 376 KVLRPFLLRRLKSDVEK----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHhhHHHhhhhHHHHhh----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999966 4888764 788999999998865433221 1123345666553
Q ss_pred c---------------ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHH
Q 005858 325 N---------------TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIR 389 (673)
Q Consensus 325 ~---------------~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 389 (673)
. ..|+|+.+|+.+|..+...|+||||||||+.++++|+++|..+|++|++|+|+++.++|+.+++
T Consensus 452 ~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id 531 (1033)
T PLN03142 452 QGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASID 531 (1033)
T ss_pred hcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHH
Confidence 2 2589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 390 HFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 390 ~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
.|+.+ ++..+|||+||+|||+||||+.|++||+||+||||+.+.||+||+||+||+++|+||+|++.||
T Consensus 532 ~Fn~~-----------~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 532 AFNKP-----------GSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred Hhccc-----------cCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 99976 4677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHh-hccc-ccCC
Q 005858 470 VEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSII-FGLH-LFDP 521 (673)
Q Consensus 470 iEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~-~g~~-~~~~ 521 (673)
|||+|++++..|+.+...|++++..... ..++.++|..|+ ||+. .|..
T Consensus 601 IEEkIlera~~Kl~Ld~~Vi~~g~~~~~----~~~~~~eL~~ll~~ga~~~f~~ 650 (1033)
T PLN03142 601 IEEKVIERAYKKLALDALVIQQGRLAEQ----KTVNKDELLQMVRYGAEMVFSS 650 (1033)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccc----ccCCHHHHHHHHHhChHHhhhc
Confidence 9999999999999999999987754322 356788999986 8875 5643
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=6.5e-87 Score=715.17 Aligned_cols=432 Identities=41% Similarity=0.634 Sum_probs=382.4
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCe
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~ 113 (673)
.++|+|||+-||+||.-.|..+.+||||||||||||+|+|+|+++|+..+. ++|.|||||.|++.||.+||.+|||.++
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlrEf~kwCPsl~ 475 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLREFAKWCPSLK 475 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHHHHHHhCCceE
Confidence 477999999999999999999999999999999999999999999988876 8999999999999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh---ccccccCCCccEEEEcCCccccCcccHHH
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM---DQGFLSQIPWCYTIIDEAQRLKNPSSVLY 190 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~---~~~~l~~~~~~~vIvDEaH~~KN~~s~~~ 190 (673)
|..|+|+...|+.+|..+.. ...+|||++|||..+.. +..+|+..+|+++|.||+|.+||..|.++
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~-----------~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKK-----------NKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred EEeccCcHHHHHHHHHHHhc-----------cCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHH
Confidence 99999999999998876543 23489999999999854 57889999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCC-hHHHHHHhhhhccC-CCcchhhhHHHHHHHHHHHHHHH
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGT-LNQFLSTFKDAVHS-SSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~-~~~f~~~f~~~~~~-~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
+.+.. ++++.||+|||||+|||+.||++||.|+.|.+|.+ ...+...|...... ..........+++.+...++.||
T Consensus 545 ~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 545 KHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred HHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 99997 89999999999999999999999999999999974 45677777655443 22222333456788899999999
Q ss_pred HhhhhhhhhhhcCCccCCCc------ccccHHHHHHHHHHHhhhHHH--------------HHhhccccccccccccc--
Q 005858 269 MLRRTKQKLVECGHLMLPPL------TEITVLQKKVYASILRKELPK--------------LLALSSRTANHQSLQNT-- 326 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~------~e~~~~Q~~~y~~~l~~~~~~--------------l~~~~~~~~~~~~l~~~-- 326 (673)
+|||.|++|.+. |||+ ++|...|+.+|..++...... ++-.....++||.|...
T Consensus 624 ILRR~K~qVL~~----LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y 699 (941)
T KOG0389|consen 624 ILRRLKSQVLKQ----LPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIY 699 (941)
T ss_pred HHHHHHHHHHHh----cCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhc
Confidence 999999999884 8886 457889999999887543111 11112234455544111
Q ss_pred -----------------------------------------------------------cCCcHHHHHHHHHHHHhCCCe
Q 005858 327 -----------------------------------------------------------ASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 327 -----------------------------------------------------------~s~Kl~~l~~ll~~~~~~g~k 347 (673)
.|||+..|..+|..+...|+|
T Consensus 700 ~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~R 779 (941)
T KOG0389|consen 700 TDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDR 779 (941)
T ss_pred cHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCE
Confidence 799999999999999999999
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
|||||||+.|||||+-+|.-.++.|+|+||++....|+.+|+.|+.+ .+++|||+||+|||.||||++
T Consensus 780 VLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d------------~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 780 VLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD------------KDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred EEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC------------CceEEEEEeeccCcceecccc
Confidence 99999999999999999999999999999999999999999999977 889999999999999999999
Q ss_pred CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCccc
Q 005858 428 ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVV 494 (673)
Q Consensus 428 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~ 494 (673)
|++||++|.++||..+.||.+||||+||+|+|+|||||+++||||.|++.+..|+.|...+-+++..
T Consensus 848 An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 848 ANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999998877653
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-86 Score=698.27 Aligned_cols=443 Identities=42% Similarity=0.704 Sum_probs=395.5
Q ss_pred ccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 28 AAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 28 ~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
.+|.-+.++|++||+.|++||...|.+|-+||||||||||||+|+|+++++|......+||+|||+|.|++.||++||.+
T Consensus 559 ~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisr 638 (1185)
T KOG0388|consen 559 PQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISR 638 (1185)
T ss_pred cCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc
Q 005858 108 FTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 108 ~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s 187 (673)
|+|.++++.|.|+...|..++..+-.. .. -....+|+|+||||+++..+..+|..++|.|+|+|||+-+|...|
T Consensus 639 FlP~~k~lpywGs~~eRkiLrKfw~rK----nm--Y~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS 712 (1185)
T KOG0388|consen 639 FLPSFKVLPYWGSPSERKILRKFWNRK----NM--YRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSS 712 (1185)
T ss_pred hCccceeecCcCChhhhHHHHHhcchh----hh--hccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhh
Confidence 999999999999999998887754321 11 124567999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
.+++.+.. |+|++|++||||||||++.|||+||+|++|.+|.+.++|.+||.+.+.+........-.+++.+||.+++|
T Consensus 713 ~RWKtLLs-F~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKP 791 (1185)
T KOG0388|consen 713 SRWKTLLS-FKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKP 791 (1185)
T ss_pred hHHHHHhh-hhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhH
Confidence 99999986 99999999999999999999999999999999999999999999988765544444556789999999999
Q ss_pred HHhhhhhhhhhhcCCccCCCc------ccccHHHHHHHHHHHhhhH----HHHHhhccccccccccccc-----------
Q 005858 268 FMLRRTKQKLVECGHLMLPPL------TEITVLQKKVYASILRKEL----PKLLALSSRTANHQSLQNT----------- 326 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~------~e~~~~Q~~~y~~~l~~~~----~~l~~~~~~~~~~~~l~~~----------- 326 (673)
||+||.|++|... |-.+ |.++..|+.+|+.+.++.. ..+.-.....|+||.|...
T Consensus 792 FMLRRvKkdV~sE----Lg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V 867 (1185)
T KOG0388|consen 792 FMLRRVKKDVISE----LGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEV 867 (1185)
T ss_pred HHHHHHHHHHHHH----hccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEc
Confidence 9999999998653 4444 4456689999998765421 1111112334444433110
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 868 ~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~K 947 (1185)
T KOG0388|consen 868 SDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGK 947 (1185)
T ss_pred ccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------------------------cC
Q 005858 327 ------------------------------------------------------------------------------AS 328 (673)
Q Consensus 327 ------------------------------------------------------------------------------~s 328 (673)
.|
T Consensus 948 avtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdS 1027 (1185)
T KOG0388|consen 948 AVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDS 1027 (1185)
T ss_pred HHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccc
Confidence 79
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCC
Q 005858 329 GKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408 (673)
Q Consensus 329 ~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~ 408 (673)
||+..|+++|.++.+.||+||+|.|++.|++++++||..+||.|.|+||+.+..+|..++.+|+ .++
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ-------------~sd 1094 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ-------------ASD 1094 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc-------------CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 689
Q ss_pred cEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHh
Q 005858 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNV 488 (673)
Q Consensus 409 ~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v 488 (673)
++|||+||+|||.||||++||+|||||++|||..+.||++|+||.||+++|+||||+++|||||+|+.++.+|....+.|
T Consensus 1095 iFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~V 1174 (1185)
T KOG0388|consen 1095 IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMV 1174 (1185)
T ss_pred eEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 005858 489 VGDDVV 494 (673)
Q Consensus 489 i~~~~~ 494 (673)
+.++.+
T Consensus 1175 m~G~~~ 1180 (1185)
T KOG0388|consen 1175 MHGNIF 1180 (1185)
T ss_pred HcCCcc
Confidence 987654
No 8
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4e-83 Score=708.91 Aligned_cols=449 Identities=36% Similarity=0.602 Sum_probs=392.8
Q ss_pred cccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC------CCCCCEEEEECcccHHH
Q 005858 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ------MSPGPFLVLCPLSVTDG 100 (673)
Q Consensus 27 ~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~------~~~~~~LIV~P~sll~~ 100 (673)
-..|..+..+||.||.+||+||......+..|||||+||+|||+|++++++.-.... ....|.|||||.+++.+
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 344677789999999999999998888888999999999999999999986543332 13468999999999999
Q ss_pred HHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCc
Q 005858 101 WVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 101 W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH 180 (673)
|+.|+.+|+|-++++.|.|....|..+|.. ....+++||+|+.+++|..++.++.|.|+|+||+|
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q---------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGH 1110 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQ---------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGH 1110 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhh---------------ccccceEEeeHHHHHHHHHHHHhcccceEEecCcc
Confidence 999999999999999999999998887763 23458999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchh-----hhHH
Q 005858 181 RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR-----GKIK 255 (673)
Q Consensus 181 ~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~-----~~~~ 255 (673)
-+||..+++++++.. +.+.+|++|||||||||+.|||+|++||+|+.+|+-.+|.++|.+++..+..+.. ....
T Consensus 1111 VikN~ktkl~kavkq-L~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~ 1189 (1549)
T KOG0392|consen 1111 VIKNSKTKLTKAVKQ-LRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGV 1189 (1549)
T ss_pred eecchHHHHHHHHHH-HhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhH
Confidence 999999999999987 9999999999999999999999999999999999999999999999976554433 3334
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCc------ccccHHHHHHHHHHHhhh---HH------------------
Q 005858 256 EQFTSLKGILSAFMLRRTKQKLVECGHLMLPPL------TEITVLQKKVYASILRKE---LP------------------ 308 (673)
Q Consensus 256 ~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~------~e~~~~Q~~~y~~~l~~~---~~------------------ 308 (673)
-.++.||+.+-|||+||+|.+|.. +|||+ +++++.|+++|+.+..+. ..
T Consensus 1190 lAleaLHKqVLPF~LRRlKedVL~----DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvF 1265 (1549)
T KOG0392|consen 1190 LALEALHKQVLPFLLRRLKEDVLK----DLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVF 1265 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHH
Confidence 568899999999999999999988 59996 689999999999988761 00
Q ss_pred HHHhhcccccccccccc------------------------ccCCcHHHHHHHHHHHH--------------hCCCeEEE
Q 005858 309 KLLALSSRTANHQSLQN------------------------TASGKLVVLDLLLKKLY--------------NSGHRVLL 350 (673)
Q Consensus 309 ~l~~~~~~~~~~~~l~~------------------------~~s~Kl~~l~~ll~~~~--------------~~g~kvlI 350 (673)
..+......++|+.+.- ..|+|+.+|.++|..+- -.+||+||
T Consensus 1266 qaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLI 1345 (1549)
T KOG0392|consen 1266 QALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILI 1345 (1549)
T ss_pred HHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEE
Confidence 11222234455655521 17999999999999883 14699999
Q ss_pred EecCchHHHHHHHHHHhC---CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 351 FAQMTQTLDILQDFLELR---KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 351 Fsq~~~~ld~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
|||+..++|++++-|-.. .+.|.|+||++++.+|++++.+||++ +.+.|+|++|.+||.|+||++
T Consensus 1346 FcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D------------ptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1346 FCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED------------PTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred eeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC------------CceeEEEEeeeccccccccCC
Confidence 999999999999988654 56789999999999999999999988 556699999999999999999
Q ss_pred CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChH
Q 005858 428 ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETD 507 (673)
Q Consensus 428 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~ 507 (673)
||||||++.+|||..+.||++|||||||+|.|+|||||++||+||+|+..|..|...++.|++.++..-. .++.+
T Consensus 1414 ADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~-----tM~Td 1488 (1549)
T KOG0392|consen 1414 ADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLE-----TMDTD 1488 (1549)
T ss_pred CceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccccc-----ccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876533 46788
Q ss_pred HHHHH
Q 005858 508 DLRSI 512 (673)
Q Consensus 508 dl~~~ 512 (673)
+|..+
T Consensus 1489 qLLdl 1493 (1549)
T KOG0392|consen 1489 QLLDL 1493 (1549)
T ss_pred HHHHH
Confidence 88776
No 9
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.2e-81 Score=684.75 Aligned_cols=439 Identities=40% Similarity=0.686 Sum_probs=397.5
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTP 110 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p 110 (673)
...+++|++||+.|+.||++.+.++.+||||||||+|||+|+|+++.++.......||+|||||++++.+|..||.+|.|
T Consensus 389 ~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP 468 (1157)
T KOG0386|consen 389 SLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP 468 (1157)
T ss_pred hhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHH
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLY 190 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~ 190 (673)
++..+.|.|++..|..+...+. ..+|+|++|||+.+.++...|..+.|.|+||||+||+||..++++
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir-------------~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt 535 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQR-------------HGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLT 535 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHh-------------cccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHH
Confidence 9999999999999887765432 257999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcc---hhhhHHHHHHHHHHHHHH
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAP---KRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~---~~~~~~~~~~~L~~~l~~ 267 (673)
..+...+.+.+|++|||||+||++.|||+||+|+.|.+|++...|..||..+..+.... ......-.+.+||++++|
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred HHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 99997899999999999999999999999999999999999999999999887654421 112223457889999999
Q ss_pred HHhhhhhhhhhhcCCccCCCcc------cccHHHHHHHHHHHhhhHH---------------HHHhhcccccccccccc-
Q 005858 268 FMLRRTKQKLVECGHLMLPPLT------EITVLQKKVYASILRKELP---------------KLLALSSRTANHQSLQN- 325 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~------e~~~~Q~~~y~~~l~~~~~---------------~l~~~~~~~~~~~~l~~- 325 (673)
|++||.|++|... ||.++ .|+..|+.+|..+...-.. ...-.....|+||.+..
T Consensus 616 FlLRRlKkeVE~~----LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ 691 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQE----LPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFAN 691 (1157)
T ss_pred HHHHhhhHHHhhh----CchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhh
Confidence 9999999999874 88754 5777999999988743211 11112234677777641
Q ss_pred ---------------ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHh
Q 005858 326 ---------------TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRH 390 (673)
Q Consensus 326 ---------------~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 390 (673)
-.+||+.+|+.+|.++.+.||+|+.|||++..++++++||..+++.|.|+||+++.++|...++.
T Consensus 692 ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 692 VENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred hccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 17999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCH
Q 005858 391 FSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTV 470 (673)
Q Consensus 391 F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~Ti 470 (673)
||.| ++.+++||+||+|||.|+|||.||+||+||++|||..+.||.+|+|||||++.|.|+|+++.+++
T Consensus 772 FN~P-----------ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 772 FNAP-----------DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred hcCC-----------CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 9988 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCCcccchh
Q 005858 471 EEVIMRRAERKLRLSHNVVGDDVVDRE 497 (673)
Q Consensus 471 Ee~i~~~~~~K~~l~~~vi~~~~~~~~ 497 (673)
||.|+..+..|+.....|+.-+.++..
T Consensus 841 eE~il~~a~~Kl~~d~kviqag~fdn~ 867 (1157)
T KOG0386|consen 841 EEKILAEAFYKLDVDGKVIQAGKFDNK 867 (1157)
T ss_pred HHHHHHHHHHhcCchHhhhhcccccCC
Confidence 999999999999999999998888753
No 10
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.3e-74 Score=624.24 Aligned_cols=495 Identities=31% Similarity=0.469 Sum_probs=392.7
Q ss_pred CCccccCcCCcCCCcHHHHHHHHHHHHHhc---------CCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEE
Q 005858 24 TPVDAAEFGVTAELKPHQVEGLSWLIRRYL---------LGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLC 93 (673)
Q Consensus 24 ~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~---------~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~ 93 (673)
.+.-.+|-++...|+|||..||.|||...+ .|.||||||.||||||+|+++|+..+... ....+++||||
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~ 735 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVC 735 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEc
Confidence 344456778889999999999999986543 57799999999999999999999877543 34567799999
Q ss_pred CcccHHHHHHHHHHHCCCCe----EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc-------
Q 005858 94 PLSVTDGWVSEMAKFTPKLE----VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD------- 162 (673)
Q Consensus 94 P~sll~~W~~E~~k~~p~~~----v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~------- 162 (673)
|.+++.||.+||.+|.+++. +-++.-..-.+...|......|.+. -.|+|+.|++++..
T Consensus 736 PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~----------ggVmIiGYdmyRnLa~gr~vk 805 (1567)
T KOG1015|consen 736 PLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQED----------GGVMIIGYDMYRNLAQGRNVK 805 (1567)
T ss_pred chHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhc----------CCEEEEehHHHHHHhcccchh
Confidence 99999999999999998632 2233222222333344444444332 27999999999753
Q ss_pred --------cccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHH
Q 005858 163 --------QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQ 234 (673)
Q Consensus 163 --------~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~ 234 (673)
...+..-++|+|||||+|.+||..+.+++++.. +.+.+||+|||||+|||+.|+|.|++|+.|+++++...
T Consensus 806 ~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~-irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~E 884 (1567)
T KOG1015|consen 806 SRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNS-IRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKE 884 (1567)
T ss_pred hhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHH-HHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHH
Confidence 233556689999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCcc-----hhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHH
Q 005858 235 FLSTFKDAVHSSSAP-----KRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASIL 303 (673)
Q Consensus 235 f~~~f~~~~~~~~~~-----~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l 303 (673)
|.++|.+++.+..-. +..-+..+.+-|+.++..|+-|+...-+.+ .|||+.+ +++.|+.+|..++
T Consensus 885 frNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk----~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 885 FRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK----FLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred HHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc----cCCCceeEEEEEeccHHHHHHHHHHH
Confidence 999999999865432 233445677889999999999999888866 5999877 5779999999988
Q ss_pred hhh----------------HHHHHhhccccccccccccc-----------------------------------------
Q 005858 304 RKE----------------LPKLLALSSRTANHQSLQNT----------------------------------------- 326 (673)
Q Consensus 304 ~~~----------------~~~l~~~~~~~~~~~~l~~~----------------------------------------- 326 (673)
... +-.-.....+...||.....
T Consensus 961 ~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~k 1040 (1567)
T KOG1015|consen 961 DHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKK 1040 (1567)
T ss_pred hhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccc
Confidence 610 00001111122222211000
Q ss_pred --------------------------------------------------------------------------------
Q 005858 327 -------------------------------------------------------------------------------- 326 (673)
Q Consensus 327 -------------------------------------------------------------------------------- 326 (673)
T Consensus 1041 s~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~ 1120 (1567)
T KOG1015|consen 1041 SGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAE 1120 (1567)
T ss_pred ccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhh
Confidence
Q ss_pred ---cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh----------------------CCCcEEEEeCCcCH
Q 005858 327 ---ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL----------------------RKYSYERLDGSIRA 381 (673)
Q Consensus 327 ---~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~----------------------~g~~~~~i~G~~~~ 381 (673)
.|+||.+|.+||..+.+-|.|+|||||....||+|+.||.. +|..|.+|||++..
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 69999999999999999999999999999999999999962 36789999999999
Q ss_pred HHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 382 EERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 382 ~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
.+|+++.++||++.| -..++|||||+||++||||.+|++||+||..|||+.+.|++-|+||+||+|||+|
T Consensus 1201 ~~R~k~~~~FNdp~N----------lRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTN----------LRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHHHHHHhcCccc----------ceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 999999999998854 4578999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHhhcccccCCccc--Ccc-----ccchhhh
Q 005858 462 INLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGLHLFDPKAI--NNE-----ESDDLRL 534 (673)
Q Consensus 462 y~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~~g~~~~~~~~~--~~~-----~~~~~~~ 534 (673)
|||++.||+|++||.||..|+.+..+|++...+.++. ..+||..+ +.|+++-. ..+ .+-+-..
T Consensus 1271 YRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy------~~neLteL----y~fep~~ddp~sEr~~~~lpKdrll 1340 (1567)
T KOG1015|consen 1271 YRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHY------TMNELTEL----YTFEPDLDDPNSERDTPMLPKDRLL 1340 (1567)
T ss_pred hhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHh------hHhhhHHH----hhcCCccCCcccccccccCCchhHH
Confidence 9999999999999999999999999999988877653 56677665 45555311 111 1222333
Q ss_pred hhHHhhHHHHHhhhhhccc
Q 005858 535 SGLNSMVEKVIAMRHEQVS 553 (673)
Q Consensus 535 ~~l~~~~~~~~~~~~~~~~ 553 (673)
+++....++++--+++|..
T Consensus 1341 ae~l~~~q~~i~~y~ehdS 1359 (1567)
T KOG1015|consen 1341 AELLQIHQEHIVGYHEHDS 1359 (1567)
T ss_pred HHHHHHHHHHhhhhhhhhh
Confidence 4444444555555666544
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.3e-73 Score=626.76 Aligned_cols=440 Identities=32% Similarity=0.493 Sum_probs=370.7
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHhc------CCCCeEEECCCcchHHHHHHHHHHHhhhcCCC-----CCCEEEEECcccH
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRYL------LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS-----PGPFLVLCPLSVT 98 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~~------~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~-----~~~~LIV~P~sll 98 (673)
.+.+...|||||++|+.||++... ..+|||+||+||+|||+|+|+++..+....+. .+| |||||.+++
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~-lVV~P~sLv 310 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKP-LVVAPSSLV 310 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCcccccccc-EEEccHHHH
Confidence 346678999999999999998764 34689999999999999999999999888777 554 999999999
Q ss_pred HHHHHHHHHHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEE
Q 005858 99 DGWVSEMAKFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTII 176 (673)
Q Consensus 99 ~~W~~E~~k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIv 176 (673)
.+|.+||.+|.. .+..+.+.|.....-.....+... .......-|.+.+|+.+..+...+....+++||+
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~--------~~~~~~~~vli~sye~~~~~~~~il~~~~glLVc 382 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFL--------GYKQFTTPVLIISYETASDYCRKILLIRPGLLVC 382 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHh--------hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEE
Confidence 999999999985 677777777766511111111111 0122235689999999999989999999999999
Q ss_pred cCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchh----h
Q 005858 177 DEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR----G 252 (673)
Q Consensus 177 DEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~----~ 252 (673)
||+|++||..+.+++++.. +++++|++|||||+||++.|+|++++|++|+.+++...|...|..++........ .
T Consensus 383 DEGHrlkN~~s~~~kaL~~-l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 383 DEGHRLKNSDSLTLKALSS-LKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred CCCCCccchhhHHHHHHHh-cCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 9999999999999999997 9999999999999999999999999999999999999999999998865333211 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccc------cHHHHHHHHHHHhhhHH--------HHHhhccccc
Q 005858 253 KIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEI------TVLQKKVYASILRKELP--------KLLALSSRTA 318 (673)
Q Consensus 253 ~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~------~~~Q~~~y~~~l~~~~~--------~l~~~~~~~~ 318 (673)
...+++.+|..+...|++||+.+.+.+ .||++.|. ++.|..+|..++..... .........+
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~il~k----~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDILLK----YLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccchhhh----hCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 114568999999999999999977766 59999885 55999999999886211 1122234456
Q ss_pred cccccccc------------------------------cCCcHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHHh
Q 005858 319 NHQSLQNT------------------------------ASGKLVVLDLLLKKLYN-SGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 319 ~~~~l~~~------------------------------~s~Kl~~l~~ll~~~~~-~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
+||.|.+. -|+|+..|..++..... ...++++.++++.++++++..++.
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 67766541 37888888888855543 345777777889999999999999
Q ss_pred CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHh
Q 005858 368 RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQAL 447 (673)
Q Consensus 368 ~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~ 447 (673)
+|+.++++||+++..+|+.+|+.||.+ .+..+|||+|++|||+||||.+|++||+||++|||+.+.||+
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p-----------~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAm 686 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDP-----------ESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAM 686 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCC-----------CCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHH
Confidence 999999999999999999999999988 466699999999999999999999999999999999999999
Q ss_pred HhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCccc
Q 005858 448 QRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVV 494 (673)
Q Consensus 448 gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~ 494 (673)
+||||.||+|+|+||||++.||+||+||+||..|..+...|++....
T Consensus 687 aR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~ 733 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEED 733 (776)
T ss_pred HHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccc
Confidence 99999999999999999999999999999999999999999987653
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-67 Score=535.32 Aligned_cols=446 Identities=30% Similarity=0.453 Sum_probs=358.3
Q ss_pred CCccccCcCCcCCCcHHHHHHHHHHHHHhc-CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHH
Q 005858 24 TPVDAAEFGVTAELKPHQVEGLSWLIRRYL-LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWV 102 (673)
Q Consensus 24 ~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~-~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~ 102 (673)
.....+|.++...|.|||++|+.|+..+.. .-.|||||||||.|||+|+|+++.. .....|+|||||.-.+.||.
T Consensus 172 ~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 172 AERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWK 247 (791)
T ss_pred hhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHH
Confidence 445677999999999999999999998866 4568999999999999999998854 34567899999999999999
Q ss_pred HHHHHHC-CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc-----------------cc
Q 005858 103 SEMAKFT-PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-----------------QG 164 (673)
Q Consensus 103 ~E~~k~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-----------------~~ 164 (673)
+|+.+++ ..+++++|+|.+...... ....||+|+|||..+... ..
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~nik-----------------el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~S 310 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKNIK-----------------ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKS 310 (791)
T ss_pred HHHHHhccCceEEEEEecccccCCHH-----------------HhhcCcEEEEecHHHHHHHHhccccccccCCcccccc
Confidence 9999998 568999999987543311 123589999999987432 45
Q ss_pred cccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChH---------H-
Q 005858 165 FLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLN---------Q- 234 (673)
Q Consensus 165 ~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~---------~- 234 (673)
.++++.|..||+||||.+|+..|...+++.. +.+.+||+|||||+||+..|||+|++||+.+.|.-+- .
T Consensus 311 lLHsi~~~RiIlDEAH~IK~R~snTArAV~~-L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~ 389 (791)
T KOG1002|consen 311 LLHSIKFYRIILDEAHNIKDRQSNTARAVFA-LETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDW 389 (791)
T ss_pred hhhhceeeeeehhhhcccccccccHHHHHHh-hHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccce
Confidence 5888999999999999999999999999986 8999999999999999999999999999887764210 0
Q ss_pred -H-------------HHHh-------hhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCccc---
Q 005858 235 -F-------------LSTF-------KDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE--- 290 (673)
Q Consensus 235 -f-------------~~~f-------~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e--- 290 (673)
| ...| ..++. .....+.....+...+.+++.+|+|||+-. ....+-|||...
T Consensus 390 ~ftdr~~c~~c~h~~m~h~~~~n~~mlk~Iq--kfG~eGpGk~af~~~h~llk~ImlrrTkl~--RAdDLgLPPRiv~vR 465 (791)
T KOG1002|consen 390 KFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQ--KFGVEGPGKEAFNNIHTLLKNIMLRRTKLE--RADDLGLPPRIVTVR 465 (791)
T ss_pred eecccccCCcccchhhhhhhhhcccccccch--hhcccCchHHHHHHHHHHHHHHHHHHhhcc--cccccCCCccceeee
Confidence 0 0000 01111 111222334566788999999999999843 344567888542
Q ss_pred ---ccHHHHHHHHHHHhhhH-------------------HHHHhhccccccccccccc----------------------
Q 005858 291 ---ITVLQKKVYASILRKEL-------------------PKLLALSSRTANHQSLQNT---------------------- 326 (673)
Q Consensus 291 ---~~~~Q~~~y~~~l~~~~-------------------~~l~~~~~~~~~~~~l~~~---------------------- 326 (673)
+.+....+|+++....- -.++.......+||.|...
T Consensus 466 rD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 466 RDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDP 545 (791)
T ss_pred hhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCCh
Confidence 45577778887653311 1122222334445544110
Q ss_pred ------------------------------------------------------------------------cCCcHHHH
Q 005858 327 ------------------------------------------------------------------------ASGKLVVL 334 (673)
Q Consensus 327 ------------------------------------------------------------------------~s~Kl~~l 334 (673)
.|.|+.+|
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEAL 625 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHH
Confidence 68899999
Q ss_pred HHHHHHHHhCC--CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEE
Q 005858 335 DLLLKKLYNSG--HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVF 412 (673)
Q Consensus 335 ~~ll~~~~~~g--~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vl 412 (673)
.+-|..+.+.+ -|.||||||+.++|.|.-.|...|+.++.+.|+|++..|...|+.|.++ .++.||
T Consensus 626 ~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd------------~~c~vf 693 (791)
T KOG1002|consen 626 VEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKND------------IDCRVF 693 (791)
T ss_pred HHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccC------------CCeEEE
Confidence 98888887655 4889999999999999999999999999999999999999999999977 667799
Q ss_pred EEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCc
Q 005858 413 MISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD 492 (673)
Q Consensus 413 L~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~ 492 (673)
|+|.+|||+.+||+.|++|+++||||||+...||.+|+|||||.+||.|.||+.++|||++|.+.|++|..+++..++++
T Consensus 694 LvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 694 LVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred EEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccchhhhhhcccChHHHHHH
Q 005858 493 VVDREVKERTAVETDDLRSI 512 (673)
Q Consensus 493 ~~~~~~~~~~~~~~~dl~~~ 512 (673)
... ...+..+||+-+
T Consensus 774 e~A-----i~kLt~eDmqfL 788 (791)
T KOG1002|consen 774 EEA-----ISKLTEEDMQFL 788 (791)
T ss_pred HHH-----HHhcCHHHHHHH
Confidence 421 224577788655
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.5e-66 Score=548.52 Aligned_cols=450 Identities=30% Similarity=0.497 Sum_probs=364.3
Q ss_pred CCCccccCcCCcCCCcHHHHHHHHHHHHHhcC-CCCeEEECCCcchHHHHHHHHHHHhhhc-------CCCCCCEEEEEC
Q 005858 23 QTPVDAAEFGVTAELKPHQVEGLSWLIRRYLL-GVNVLLGDEMGLGKTLQAISFLSYLKFS-------QMSPGPFLVLCP 94 (673)
Q Consensus 23 ~~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~~-~~~~iLade~GlGKTl~ai~~i~~l~~~-------~~~~~~~LIV~P 94 (673)
-+.....|.++.+.|.|||+.|+.||..+... +.||||||+||+|||+++|+++..-+.. +....++|||||
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 46678889999999999999999999876544 6799999999999999999999665432 122336999999
Q ss_pred cccHHHHHHHHHHHC--CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh----------c
Q 005858 95 LSVTDGWVSEMAKFT--PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM----------D 162 (673)
Q Consensus 95 ~sll~~W~~E~~k~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~----------~ 162 (673)
.+++.||..|+.+-. -.+.|++|||+.. +.+....+ ..||||||||..+.+ .
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~--r~i~~~~L--------------~~YDvViTTY~lva~~~~~e~~~~~~ 455 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK--REISAKEL--------------RKYDVVITTYNLVANKPDDELEEGKN 455 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc--ccCCHHHH--------------hhcceEEEeeeccccCCchhhhcccC
Confidence 999999999998655 3589999999885 22222222 248999999999876 2
Q ss_pred cccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 005858 163 QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA 242 (673)
Q Consensus 163 ~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~ 242 (673)
...+..+.|.+||+||||.+||.+++.+.+++. +.+..||+||||||||++.|+|+|+.||+-..|+++..|.++....
T Consensus 456 ~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~-L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~ 534 (901)
T KOG4439|consen 456 SSPLARIAWSRVILDEAHNIRNSNTQCSKAVCK-LSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM 534 (901)
T ss_pred ccHHHHhhHHHhhhhhhhhhcccchhHHHHHHH-HhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc
Confidence 455788899999999999999999999999997 8999999999999999999999999999999999999999888653
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCC-ccCCCcc------cccHHHHHHHHHHHhhh---HHHH--
Q 005858 243 VHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGH-LMLPPLT------EITVLQKKVYASILRKE---LPKL-- 310 (673)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~-~~lp~~~------e~~~~Q~~~y~~~l~~~---~~~l-- 310 (673)
.. ....++.-+.++.|+||||+.+...+. ..+|++. +++......|.-+.... +..+
T Consensus 535 s~-----------~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~ 603 (901)
T KOG4439|consen 535 SK-----------GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLL 603 (901)
T ss_pred cc-----------cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 123456677899999999998865333 3566643 23444445554333210 1000
Q ss_pred --------------------------------------------------Hhhcccccccccccc---------------
Q 005858 311 --------------------------------------------------LALSSRTANHQSLQN--------------- 325 (673)
Q Consensus 311 --------------------------------------------------~~~~~~~~~~~~l~~--------------- 325 (673)
+......+.|+.+..
T Consensus 604 ~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~ 683 (901)
T KOG4439|consen 604 QREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDD 683 (901)
T ss_pred hhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcch
Confidence 000111122221100
Q ss_pred ------------------------------------------ccCCcHHHHHHHHHHH-HhCCCeEEEEecCchHHHHHH
Q 005858 326 ------------------------------------------TASGKLVVLDLLLKKL-YNSGHRVLLFAQMTQTLDILQ 362 (673)
Q Consensus 326 ------------------------------------------~~s~Kl~~l~~ll~~~-~~~g~kvlIFsq~~~~ld~l~ 362 (673)
..|.|+..+..++..+ ....+|++|.|||+.++.++.
T Consensus 684 sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 0577888888888877 567899999999999999999
Q ss_pred HHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcch
Q 005858 363 DFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV 442 (673)
Q Consensus 363 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~ 442 (673)
..+...|+.|..++|.+..++|+.+++.||.. .++.+|+|+|..|||+||||++|+|+|++|++|||+.
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~-----------k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaL 832 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQE-----------KGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPAL 832 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhc-----------cCCceEEEEEEccCcceeeecccceEEEEecccCHHH
Confidence 99999999999999999999999999999976 6889999999999999999999999999999999999
Q ss_pred HHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHhhcc
Q 005858 443 DKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFGL 516 (673)
Q Consensus 443 ~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~~g~ 516 (673)
..||-+|+||+||+|+|.||||++.||+|++|...|..|..++..|+.+.... ....+...||+.+ ||+
T Consensus 833 EqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr----~~~kLT~adlk~L-Fgl 901 (901)
T KOG4439|consen 833 EQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATR----KMNKLTLADLKKL-FGL 901 (901)
T ss_pred HHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcccc----ccccccHHHHHHH-hCC
Confidence 99999999999999999999999999999999999999999999999865432 2446788899876 773
No 14
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-59 Score=480.51 Aligned_cols=416 Identities=26% Similarity=0.374 Sum_probs=335.9
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTP 110 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p 110 (673)
..+--.|.|||++||.|.+++ |++++||||||||||+|||+++.+++ ..+|.|||||.++...|.+++.+|.|
T Consensus 193 ~kLvs~LlPFQreGv~faL~R---gGR~llADeMGLGKTiQAlaIA~yyr----aEwplliVcPAsvrftWa~al~r~lp 265 (689)
T KOG1000|consen 193 PKLVSRLLPFQREGVIFALER---GGRILLADEMGLGKTIQALAIARYYR----AEWPLLIVCPASVRFTWAKALNRFLP 265 (689)
T ss_pred HHHHHhhCchhhhhHHHHHhc---CCeEEEecccccchHHHHHHHHHHHh----hcCcEEEEecHHHhHHHHHHHHHhcc
Confidence 344467999999999999998 88999999999999999999999886 66899999999999999999999998
Q ss_pred CCeE-EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH
Q 005858 111 KLEV-LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189 (673)
Q Consensus 111 ~~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~ 189 (673)
.... .+..+..+.... .+....|.|+||+++......+..-+|.+||+||+|.+|+..+++
T Consensus 266 s~~pi~vv~~~~D~~~~------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 266 SIHPIFVVDKSSDPLPD------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred cccceEEEecccCCccc------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhh
Confidence 7544 333333322111 122346999999999999999999899999999999999999998
Q ss_pred HHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH-
Q 005858 190 YNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA- 267 (673)
Q Consensus 190 ~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~- 267 (673)
.+++...+ ...|.|+|||||--.++.|||.++..+++.+|..+.+|..+||+........ ....-.+..+|+.++..
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~-Dykg~tnl~EL~~lL~k~ 406 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF-DYKGCTNLEELAALLFKR 406 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee-ecCCCCCHHHHHHHHHHH
Confidence 88876644 4678899999999999999999999999999999999999999864322111 11112457888888765
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccH-----HHHHHHHHHHhhhHHHHHhhc----cccccccccccccCCcHHHHHHHH
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITV-----LQKKVYASILRKELPKLLALS----SRTANHQSLQNTASGKLVVLDLLL 338 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~-----~Q~~~y~~~l~~~~~~l~~~~----~~~~~~~~l~~~~s~Kl~~l~~ll 338 (673)
.|+||+|+++... |||+....+ .+-..-..++..... ..... ...+....+....-.|+..+.+.+
T Consensus 407 lMIRRlK~dvL~q----LPpKrr~Vv~~~~gr~da~~~~lv~~a~~-~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi 481 (689)
T KOG1000|consen 407 LMIRRLKADVLKQ----LPPKRREVVYVSGGRIDARMDDLVKAAAD-YTKVNSMERKHESLLLFYSLTGIAKAAAVCEYI 481 (689)
T ss_pred HHHHHHHHHHHhh----CCccceEEEEEcCCccchHHHHHHHHhhh-cchhhhhhhhhHHHHHHHHHhcccccHHHHHHH
Confidence 5999999999884 999754221 222222222221111 00000 001111222344667888888877
Q ss_pred HH----HHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 339 KK----LYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 339 ~~----~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
.. ..+.+.|++||+++..++|-|+.++..+++..+||||+++..+|+.+++.|+.+ .+..|-++
T Consensus 482 ~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~s------------eev~VAvl 549 (689)
T KOG1000|consen 482 LENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTS------------EEVRVAVL 549 (689)
T ss_pred HhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccc------------cceEEEEE
Confidence 76 456789999999999999999999999999999999999999999999999976 77889999
Q ss_pred eccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhc
Q 005858 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVV 489 (673)
Q Consensus 415 st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi 489 (673)
|..|+|+||+|++|+.|+|.+.+|||..+.||.+|+||+||+..|.||+|+++||+|+++|..+.+|+.....+-
T Consensus 550 sItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 550 SITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997765543
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-59 Score=555.88 Aligned_cols=434 Identities=39% Similarity=0.639 Sum_probs=371.2
Q ss_pred cCCcCCCcHHHHHHHHHHH-HHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC-CCCEEEEECcccHHHHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLI-RRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~-~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~-~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
..+...|+|||.+|++|+. .....+.+|+|||+||+|||+|+++++..+...... .+|+|||||.+++.+|.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5667889999999999999 787888999999999999999999999876555544 57999999999999999999999
Q ss_pred CCCCe-EEEEeCChHH----HHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh---ccccccCCCccEEEEcCCc
Q 005858 109 TPKLE-VLRYVGEREQ----RRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM---DQGFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 109 ~p~~~-v~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~---~~~~l~~~~~~~vIvDEaH 180 (673)
.|.++ +..++|.... +..+....... ....++++++||+.+.. +...+....|+++|+||||
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~ 482 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLH----------LVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAH 482 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhc----------ccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHH
Confidence 99999 9999998863 33332221110 02347999999999999 9999999999999999999
Q ss_pred cccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHH-HhCCCCCC-ChHHHHHHhhhhccCCCcchh-hhHHHH
Q 005858 181 RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMH-FCMPSVFG-TLNQFLSTFKDAVHSSSAPKR-GKIKEQ 257 (673)
Q Consensus 181 ~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~-~l~p~~~~-~~~~f~~~f~~~~~~~~~~~~-~~~~~~ 257 (673)
++||..+..++++. .+++.++++|||||++|++.|||++++ |+.|+.++ +...|..+|..+......... ......
T Consensus 483 ~ikn~~s~~~~~l~-~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 561 (866)
T COG0553 483 RIKNDQSSEGKALQ-FLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELG 561 (866)
T ss_pred HHhhhhhHHHHHHH-HHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHH
Confidence 99999999999999 599999999999999999999999999 99999999 669999999988765443221 112234
Q ss_pred HHHHHHHHHHHHhhhhhhh--hhhcCCccCCCccc------ccHHHHHHHHHHHh---hhHHHHHhh-------------
Q 005858 258 FTSLKGILSAFMLRRTKQK--LVECGHLMLPPLTE------ITVLQKKVYASILR---KELPKLLAL------------- 313 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~--v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~---~~~~~l~~~------------- 313 (673)
+..|+.+++||++||++.+ +.. .+|++.+ ++..|+.+|...+. .....+...
T Consensus 562 ~~~l~~~i~~f~lrr~k~~~~v~~----~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (866)
T COG0553 562 IELLRKLLSPFILRRTKEDVEVLK----ELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDS 637 (866)
T ss_pred HHHHHHHHHHHhhcccccchhHHH----hCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 5558999999999999999 654 4888654 56689999998887 332222111
Q ss_pred ----------ccccccccccccc----------------------------cC-CcHHHHHHHH-HHHHhCCC--eEEEE
Q 005858 314 ----------SSRTANHQSLQNT----------------------------AS-GKLVVLDLLL-KKLYNSGH--RVLLF 351 (673)
Q Consensus 314 ----------~~~~~~~~~l~~~----------------------------~s-~Kl~~l~~ll-~~~~~~g~--kvlIF 351 (673)
....++||.+... .| +|+..+.+++ ..+..+|+ +++||
T Consensus 638 ~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlif 717 (866)
T COG0553 638 ELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIF 717 (866)
T ss_pred hhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEE
Confidence 1123444443221 23 8999999999 88999999 99999
Q ss_pred ecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCee
Q 005858 352 AQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV 431 (673)
Q Consensus 352 sq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~V 431 (673)
+||+.++++++.+|...++.+++++|+++...|+.++++|+++ .+..||++|++|||.||||+.|++|
T Consensus 718 sq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~------------~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 718 SQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD------------EEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred eCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC------------CCCceEEEEecccccceeecccceE
Confidence 9999999999999999999999999999999999999999955 5788999999999999999999999
Q ss_pred EeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCC
Q 005858 432 IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491 (673)
Q Consensus 432 I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~ 491 (673)
|+||++|||+.+.||++|+||+||+++|.||++++++|+||+|++++..|..+...++++
T Consensus 786 i~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 786 ILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred EEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999986
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-57 Score=483.79 Aligned_cols=448 Identities=29% Similarity=0.492 Sum_probs=355.9
Q ss_pred cCCcCCCcHHHHHHHHHHHHHh---------cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRY---------LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~---------~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..++.-++|||.-||.||..+. ..|.||||||.||||||+|+|+|+..+.+.. ..+.+|+|+|-.++.||
T Consensus 249 pqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-~AKtVL~ivPiNTlQNW 327 (1387)
T KOG1016|consen 249 PQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-KAKTVLVIVPINTLQNW 327 (1387)
T ss_pred hhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-ccceEEEEEehHHHHHH
Confidence 3456779999999999997542 2477999999999999999999998886555 55679999999999999
Q ss_pred HHHHHHHCCC-----------CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--------
Q 005858 102 VSEMAKFTPK-----------LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-------- 162 (673)
Q Consensus 102 ~~E~~k~~p~-----------~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-------- 162 (673)
..||..|.|. +.+++. ++....-..|......|-. .-.|+++.|++|+-.
T Consensus 328 lsEfnmWiP~y~sD~~vrpR~F~vf~L-nD~~KT~~~Rakvi~~Wv~----------~GGVlLvGYemfRLL~lk~~~~~ 396 (1387)
T KOG1016|consen 328 LSEFNMWIPKYFSDTGVRPRSFEVFLL-NDGVKTFDQRAKVIEQWVQ----------TGGVLLVGYEMFRLLILKTLPKK 396 (1387)
T ss_pred HHHhhhhcCCCcccCCCccceeEEEEe-cCchhhHHHHHHHHHHHhc----------cCCEEEehHHHHHHHHHhccccc
Confidence 9999999976 344433 3333333334443333322 236999999998532
Q ss_pred ------------------------------cccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 163 ------------------------------QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 163 ------------------------------~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
...+-.-+.|+|||||+|+|||.....+.++.. +++++|+.|||-|+||
T Consensus 397 grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~-IrtrRRiVLTGYPLQN 475 (1387)
T KOG1016|consen 397 GRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKA-IRTRRRIVLTGYPLQN 475 (1387)
T ss_pred CCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHH-hhhceeEEEecccccc
Confidence 112344568999999999999999999999987 9999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCC-----CcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCC
Q 005858 213 NLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS-----SAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPP 287 (673)
Q Consensus 213 ~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~-----~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~ 287 (673)
|+.|+|.|++|++|+.+++...|...|..++.+. ...+......+..-|+.++..|+-||+..-+.. .||.
T Consensus 476 NLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~----~LP~ 551 (1387)
T KOG1016|consen 476 NLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK----ILPE 551 (1387)
T ss_pred chHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh----hccc
Confidence 9999999999999999999999999999998763 233334445677889999999999999987754 6998
Q ss_pred ccc------ccHHHHHHHHHHHhhhHHHHH-------------hhccccccccccccc----------------------
Q 005858 288 LTE------ITVLQKKVYASILRKELPKLL-------------ALSSRTANHQSLQNT---------------------- 326 (673)
Q Consensus 288 ~~e------~~~~Q~~~y~~~l~~~~~~l~-------------~~~~~~~~~~~l~~~---------------------- 326 (673)
+.| ++..|+++|..++......+. ......++|+.....
T Consensus 552 k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag 631 (1387)
T KOG1016|consen 552 KKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAG 631 (1387)
T ss_pred ccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhc
Confidence 877 456899999988733221110 011112223221000
Q ss_pred ---------------------------------------------------------------------cCCcHHHHHHH
Q 005858 327 ---------------------------------------------------------------------ASGKLVVLDLL 337 (673)
Q Consensus 327 ---------------------------------------------------------------------~s~Kl~~l~~l 337 (673)
.+.|+..+.++
T Consensus 632 ~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~ 711 (1387)
T KOG1016|consen 632 LQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEI 711 (1387)
T ss_pred ccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEee
Confidence 34555555556
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHhC------------------CCcEEEEeCCcCHHHHHHHHHhhccchhHhh
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLELR------------------KYSYERLDGSIRAEERFAAIRHFSVQSAIER 399 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~ 399 (673)
+..-...|.|+|||||....|+.|+++|..+ +..|.+++|.++..+|.++|++||.++
T Consensus 712 ~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~---- 787 (1387)
T KOG1016|consen 712 LDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP---- 787 (1387)
T ss_pred eccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC----
Confidence 6665667899999999999999999999754 346899999999999999999999773
Q ss_pred hhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 400 ~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
+-...||+||++|..||||.+|+.+|+||..|||..+.||++|++|+||+|+++|||||+.+|+|.+||.||.
T Consensus 788 -------~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQI 860 (1387)
T KOG1016|consen 788 -------GLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQI 860 (1387)
T ss_pred -------CceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHH
Confidence 4446999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCcccchhhhhhcccChHHHHHH
Q 005858 480 RKLRLSHNVVGDDVVDREVKERTAVETDDLRSI 512 (673)
Q Consensus 480 ~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~ 512 (673)
.|+.+..+|+++-.-+- .++..|+..+
T Consensus 861 sKqGmsdRvVDd~np~a------n~s~Ke~enL 887 (1387)
T KOG1016|consen 861 SKQGMSDRVVDDANPDA------NISQKELENL 887 (1387)
T ss_pred hhccchhhhhcccCccc------cccHHHHHHH
Confidence 99999999998765433 3466666665
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.1e-54 Score=501.91 Aligned_cols=426 Identities=20% Similarity=0.252 Sum_probs=307.6
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPK 111 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~ 111 (673)
+....|.|||+..+.++.... ..++|||||||+|||++|++++..+...+ ..+|+|||||.+++.||..|+.+++ +
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~ 223 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-N 223 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-C
Confidence 457889999999998776653 56899999999999999999999886544 5678999999999999999997766 3
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccCc---
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKNP--- 185 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN~--- 185 (673)
+...++.+...... .. ........++++|+||+.+..+. ..+....||+|||||||+++|.
T Consensus 224 l~~~i~~~~~~~~~----------~~---~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~ 290 (956)
T PRK04914 224 LRFSLFDEERYAEA----------QH---DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEA 290 (956)
T ss_pred CCeEEEcCcchhhh----------cc---cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCC
Confidence 45555544331100 00 00012234789999999998754 4466779999999999999953
Q ss_pred ccHHHHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhcc---------CCCc---chhh
Q 005858 186 SSVLYNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVH---------SSSA---PKRG 252 (673)
Q Consensus 186 ~s~~~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~---------~~~~---~~~~ 252 (673)
.|..++.+.... .++++++|||||++|+..|+|++|+||+|+.|+++..|....+.... .... ...+
T Consensus 291 ~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~ 370 (956)
T PRK04914 291 PSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALN 370 (956)
T ss_pred cCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHH
Confidence 456677776522 56799999999999999999999999999999999999865443110 0000 0000
Q ss_pred hHHH------------------------HHHHHHHHH-----HHHHhhhhhhhhhhcCCccCCCccccc--HHHHHHHHH
Q 005858 253 KIKE------------------------QFTSLKGIL-----SAFMLRRTKQKLVECGHLMLPPLTEIT--VLQKKVYAS 301 (673)
Q Consensus 253 ~~~~------------------------~~~~L~~~l-----~~~~lrr~k~~v~~~~~~~lp~~~e~~--~~Q~~~y~~ 301 (673)
...+ ....+..++ ...|+|+++.++.. .|+..... ......|..
T Consensus 371 ~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-----fp~R~~~~~~l~~~~~y~~ 445 (956)
T PRK04914 371 ALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-----FPKRELHPIPLPLPEQYQT 445 (956)
T ss_pred HHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-----CCcCceeEeecCCCHHHHH
Confidence 0000 001111121 25678888888753 34332111 000112332
Q ss_pred HHhhhHHH-HHhh-cccc-cc---ccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHH-HhCCCcEEE
Q 005858 302 ILRKELPK-LLAL-SSRT-AN---HQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFL-ELRKYSYER 374 (673)
Q Consensus 302 ~l~~~~~~-l~~~-~~~~-~~---~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L-~~~g~~~~~ 374 (673)
........ +... .... .. ...-....++|+..|..++... .++|+||||++..+++.|.+.| ...|+++..
T Consensus 446 ~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ 523 (956)
T PRK04914 446 AIKVSLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAV 523 (956)
T ss_pred HHHHhHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEE
Confidence 22110000 0000 0000 00 0000112467888888888764 4789999999999999999999 467999999
Q ss_pred EeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccC
Q 005858 375 LDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIG 454 (673)
Q Consensus 375 i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 454 (673)
++|+++..+|.++++.|++. .++. .+|++|.+||+|+|++.|++||+||+||||..++||+||+||+|
T Consensus 524 ihG~~s~~eR~~~~~~F~~~-----------~~~~-~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiG 591 (956)
T PRK04914 524 FHEGMSIIERDRAAAYFADE-----------EDGA-QVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIG 591 (956)
T ss_pred EECCCCHHHHHHHHHHHhcC-----------CCCc-cEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCC
Confidence 99999999999999999943 1234 45678899999999999999999999999999999999999999
Q ss_pred CcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCcc
Q 005858 455 QMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDV 493 (673)
Q Consensus 455 Q~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~ 493 (673)
|+++|.||.++.++|+++.|++....|..++..++....
T Consensus 592 Q~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 592 QKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred CCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 999999999999999999999999999999888887653
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-47 Score=427.32 Aligned_cols=412 Identities=31% Similarity=0.469 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHHh-cCCCCeEEECCCcchHHHHHHHHHHHhhhcCC------CCCCEEEEECcccHHHHHHHHHHHCC-
Q 005858 39 PHQVEGLSWLIRRY-LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM------SPGPFLVLCPLSVTDGWVSEMAKFTP- 110 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~-~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~------~~~~~LIV~P~sll~~W~~E~~k~~p- 110 (673)
.+|..+-.|+.... ..-.|||++|+||+|||+++++++...+.... ..+.+|||||.+++.+|..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 66666654444332 22458999999999999999999977655444 55679999999999999999966663
Q ss_pred -CCeEEEEeC-ChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccH
Q 005858 111 -KLEVLRYVG-EREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSV 188 (673)
Q Consensus 111 -~~~v~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~ 188 (673)
.+.+.+|+| .++. ....+++||+|||+++.. ..+..+.|-.+|+||||.++|.+++
T Consensus 215 ~~l~v~v~~gr~kd~--------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq 272 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK--------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQ 272 (674)
T ss_pred cceEEEEeccccccc--------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchH
Confidence 578888888 2211 123457899999999986 5666799999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
.++++.. +.+.+||+|||||+||++.|+|+++.|+.-..+.....|...+..+.... ...+.+..++.++..+
T Consensus 273 ~~~a~~~-L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~------~~~~~~k~l~~~L~~v 345 (674)
T KOG1001|consen 273 IFKAVCQ-LDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERN------KYKEGVKTLQGILKKV 345 (674)
T ss_pred hhhhhee-eccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhh------hHHHHHHHHHHHHHHH
Confidence 9999986 89999999999999999999999999999999999999988888765422 2245678899999999
Q ss_pred HhhhhhhhhhhcC-CccCCCccc------ccHHHHHHHHHHHhhhHHHH-------------------Hhhccccccccc
Q 005858 269 MLRRTKQKLVECG-HLMLPPLTE------ITVLQKKVYASILRKELPKL-------------------LALSSRTANHQS 322 (673)
Q Consensus 269 ~lrr~k~~v~~~~-~~~lp~~~e------~~~~Q~~~y~~~l~~~~~~l-------------------~~~~~~~~~~~~ 322 (673)
++||+|....... .+.+||+.- .....+.+|..+........ +......+.|+.
T Consensus 346 ~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~ 425 (674)
T KOG1001|consen 346 MLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSL 425 (674)
T ss_pred HhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchH
Confidence 9999997655422 346888642 34456666665442210000 000000001100
Q ss_pred ccc----------------------------------c------------------------------------------
Q 005858 323 LQN----------------------------------T------------------------------------------ 326 (673)
Q Consensus 323 l~~----------------------------------~------------------------------------------ 326 (673)
+.. .
T Consensus 426 lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 426 LVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred hhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 000 0
Q ss_pred --------------cCCcHHHHHHHHHHHHhCCC-eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 327 --------------ASGKLVVLDLLLKKLYNSGH-RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 327 --------------~s~Kl~~l~~ll~~~~~~g~-kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
.|.|+..+..+|........ +++||||++.+++++...|...++.+.+++|.++...|.+.+..|
T Consensus 506 s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~ 585 (674)
T KOG1001|consen 506 SANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDF 585 (674)
T ss_pred hcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccc
Confidence 14555556666654433333 999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHH
Q 005858 392 SVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471 (673)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiE 471 (673)
+.+ +...|+++|.+|||.|+||+.|++|+..||+|||..++||++|+||+||+++|.|++|+..+|+|
T Consensus 586 ~~~------------~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtve 653 (674)
T KOG1001|consen 586 PCD------------PLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVE 653 (674)
T ss_pred ccC------------ccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccH
Confidence 955 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhcCC
Q 005858 472 EVIMRRAERKLRLSHNVVGD 491 (673)
Q Consensus 472 e~i~~~~~~K~~l~~~vi~~ 491 (673)
|++...+++|..+....++.
T Consensus 654 er~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 654 ERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 99999999999998776654
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=4.1e-48 Score=425.60 Aligned_cols=372 Identities=42% Similarity=0.682 Sum_probs=325.2
Q ss_pred CCccccCcCCc---CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHH
Q 005858 24 TPVDAAEFGVT---AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDG 100 (673)
Q Consensus 24 ~~~~~~p~~~~---~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~ 100 (673)
.+...+|.-+. +.|.+||.+|++|+...+..+..+|+|||||+|||.+++.++..+......++|.|+++|.+++.+
T Consensus 280 v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~n 359 (696)
T KOG0383|consen 280 VPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVN 359 (696)
T ss_pred CCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccC
Confidence 33344444333 889999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhh-------hccCCCCCCCCCEEEecHHHHHhccccccCCCccE
Q 005858 101 WVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQ-------SQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCY 173 (673)
Q Consensus 101 W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~ 173 (673)
|.+|+..|.|...+..|+|+...+..++.-.+...... ..........|++.+++|+....+...+..+.|.+
T Consensus 360 we~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~ 439 (696)
T KOG0383|consen 360 WEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGL 439 (696)
T ss_pred CCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcce
Confidence 99999999999999999999998888776544332221 11123355679999999999999999999999999
Q ss_pred EEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhh
Q 005858 174 TIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGK 253 (673)
Q Consensus 174 vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~ 253 (673)
+|+||+|++||..+.++..+.. ++..++++|||||.+|++.||+++|+||.|+.|++...|.+.|.+...
T Consensus 440 livde~~rlkn~~s~~f~~l~~-~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~--------- 509 (696)
T KOG0383|consen 440 LIVDEAHRLKNKQSKRFRVLTA-YPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISC--------- 509 (696)
T ss_pred eEeechhhcccchhhhhhhccc-cccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhH---------
Confidence 9999999999999999999886 899999999999999999999999999999999999999998876432
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhHHHHHhhcc------------
Q 005858 254 IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKLLALSS------------ 315 (673)
Q Consensus 254 ~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~~~l~~~~~------------ 315 (673)
.+++..|+.++.++|+||.+.|+.+. .|++.+ +++.|+++|+.++.+++..+.....
T Consensus 510 -~~~~~~l~~l~~p~~lrr~k~d~l~~----~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~ 584 (696)
T KOG0383|consen 510 -EEQIKKLHLLLCPHMLRRLKLDVLKP----MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELR 584 (696)
T ss_pred -HHHHHhhccccCchhhhhhhhhhccC----CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHH
Confidence 56889999999999999999999873 677765 6789999999999988877765322
Q ss_pred cccccccccc-----------------ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCC
Q 005858 316 RTANHQSLQN-----------------TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGS 378 (673)
Q Consensus 316 ~~~~~~~l~~-----------------~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~ 378 (673)
..++|+.+.. ..|+|+..|..+++++...||||+||+||+.++|++++++...+ .|.++||.
T Consensus 585 K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~ 663 (696)
T KOG0383|consen 585 KQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGP 663 (696)
T ss_pred HhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCC
Confidence 2234443321 17999999999999999999999999999999999999999999 99999999
Q ss_pred cCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 379 IRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 379 ~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
.+..+|+.+|++||.+ ++..++||+||+|||+|
T Consensus 664 ~~~~~rq~ai~~~n~~-----------~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 664 ITGPERQAAIDRFNAP-----------GSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccchhhhhhccccCCC-----------CccceEEEeecccccCC
Confidence 9999999999999988 78999999999999998
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9e-39 Score=358.18 Aligned_cols=342 Identities=18% Similarity=0.283 Sum_probs=242.2
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHC-
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFT- 109 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~- 109 (673)
.....|||||.+++.+++.. ...++|||..+||+|||+++++++..+. +++|||||.. ++.||.++|.+|+
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l~------k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTVK------KSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 33688999999999988653 1124799999999999999999987662 6799999986 4799999999997
Q ss_pred -CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc----------cccccCCCccEEEEcC
Q 005858 110 -PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD----------QGFLSQIPWCYTIIDE 178 (673)
Q Consensus 110 -p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~----------~~~l~~~~~~~vIvDE 178 (673)
+...+..|.|..... .....+|+|+||+++... ...+....|++||+||
T Consensus 324 l~~~~I~~~tg~~k~~--------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 324 IDDSQICRFTSDAKER--------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred CCCceEEEEecCcccc--------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 345666777654211 011357999999998643 2345566899999999
Q ss_pred CccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHH-hCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHF-CMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 179 aH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~-l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
||++.+ ....+.+. .+.+++||+|||||++++-. +..+.+ +.|..+.. .|
T Consensus 384 vH~lpA--~~fr~il~-~l~a~~RLGLTATP~ReD~~--~~~L~~LiGP~vye~--~~---------------------- 434 (732)
T TIGR00603 384 VHVVPA--AMFRRVLT-IVQAHCKLGLTATLVREDDK--ITDLNFLIGPKLYEA--NW---------------------- 434 (732)
T ss_pred cccccH--HHHHHHHH-hcCcCcEEEEeecCcccCCc--hhhhhhhcCCeeeec--CH----------------------
Confidence 999854 23334454 47899999999999987632 333443 44544321 01
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCcc----CCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLM----LPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV 333 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~----lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~ 333 (673)
.++...+.+. .+..+++++. .|...+...... ...+......|+..
T Consensus 435 -----------------~eLi~~G~LA~~~~~ev~v~~t~~---~~~~yl~~~~~~----------k~~l~~~np~K~~~ 484 (732)
T TIGR00603 435 -----------------MELQKKGFIANVQCAEVWCPMTPE---FYREYLRENSRK----------RMLLYVMNPNKFRA 484 (732)
T ss_pred -----------------HHHHhCCccccceEEEEEecCCHH---HHHHHHHhcchh----------hhHHhhhChHHHHH
Confidence 0111111111 1112234433 333333221110 01111234578888
Q ss_pred HHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEE
Q 005858 334 LDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFM 413 (673)
Q Consensus 334 l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL 413 (673)
+..++......|+|+||||++...++.+...| +. ..|+|.++..+|.+++++|+.. +... +|
T Consensus 485 ~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~------------~~i~-vL 546 (732)
T TIGR00603 485 CQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHN------------PKVN-TI 546 (732)
T ss_pred HHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhC------------CCcc-EE
Confidence 88888876678999999999988888777766 33 4589999999999999999822 2344 45
Q ss_pred EeccccccccCCCCCCeeEeeCCCC-CcchHHHHhHhhhccCCcC-----eEEEEEEecCCCHHHHHHHH
Q 005858 414 ISTRAGGVGLNLVAADTVIFYEQDW-NPQVDKQALQRAHRIGQMN-----HVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 414 ~st~agg~GiNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k-----~V~Vy~lv~~~TiEe~i~~~ 477 (673)
+++++|++|||++.|++||++++++ ++..+.||.||+.|.+..+ +..+|.|++++|.|+..-.+
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 5569999999999999999999986 9999999999999998754 47899999999999877443
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-35 Score=311.58 Aligned_cols=241 Identities=38% Similarity=0.627 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHh---------cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCC--CCEEEEECcccHHHHHHHHHHH
Q 005858 40 HQVEGLSWLIRRY---------LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSP--GPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 40 ~Q~~gv~~l~~~~---------~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~--~~~LIV~P~sll~~W~~E~~k~ 108 (673)
||++||.||+.+. ...+||||||+||+|||+++++++..+....... +++|||||.+++.+|..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 6778999999999999999999999876555433 3699999999999999999999
Q ss_pred C-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHH-----hccccccCCCccEEEEcCCcc
Q 005858 109 T-P-KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVL-----MDQGFLSQIPWCYTIIDEAQR 181 (673)
Q Consensus 109 ~-p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~-----~~~~~l~~~~~~~vIvDEaH~ 181 (673)
+ | ..+++++.|...... ........++++|+||+.+. .....+...+|++||+||+|+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~ 145 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR---------------LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHR 145 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH---------------TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGG
T ss_pred ccccccccccccccccccc---------------ccccccccceeeeccccccccccccccccccccccceeEEEecccc
Confidence 9 4 689998888772111 11234567899999999999 667778888999999999999
Q ss_pred ccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHH
Q 005858 182 LKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 182 ~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L 261 (673)
+||..+..++++.. +.+.++|+|||||++|++.|+|++++||.|..+.+...|...|... ......+....|
T Consensus 146 ~k~~~s~~~~~l~~-l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~-------~~~~~~~~~~~L 217 (299)
T PF00176_consen 146 LKNKDSKRYKALRK-LRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP-------DKENSYENIERL 217 (299)
T ss_dssp GTTTTSHHHHHHHC-CCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH-------HHTHHHHHHHHH
T ss_pred cccccccccccccc-cccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh-------cccccccccccc
Confidence 99999999999997 8899999999999999999999999999999999999999998765 234456778899
Q ss_pred HHHHHHHHhhhhhhhhhhcCCccCCCcc------cccHHHHHHHHHHHhhhH
Q 005858 262 KGILSAFMLRRTKQKLVECGHLMLPPLT------EITVLQKKVYASILRKEL 307 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~v~~~~~~~lp~~~------e~~~~Q~~~y~~~l~~~~ 307 (673)
..+++++++||++.++.. .+|+.. ++++.|+..|..+.....
T Consensus 218 ~~~l~~~~~r~~~~d~~~----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~ 265 (299)
T PF00176_consen 218 RELLSEFMIRRTKKDVEK----ELPPKIEHVINVELSPEQRELYNELLKEAR 265 (299)
T ss_dssp HHHHCCCEECHCGGGGCT----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHG
T ss_pred ccccchhhhhhhcccccc----cCCceEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999833 477754 478899999997766543
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.5e-34 Score=335.71 Aligned_cols=411 Identities=22% Similarity=0.230 Sum_probs=272.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-- 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-- 110 (673)
..++|+||.+.+..++. .++|++++||+|||++++.++..+.. ...+++|||||. .++.||..++.+++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIP 85 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 46789999998876654 38999999999999999888876652 234679999998 788999999998863
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcccH
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSSV 188 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s~ 188 (673)
..++..+.|...... +...+. ..+++++|++.+..+. ..+....|++||+||||++.+..+.
T Consensus 86 ~~~v~~~~g~~~~~~--r~~~~~--------------~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~ 149 (773)
T PRK13766 86 EEKIVVFTGEVSPEK--RAELWE--------------KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAY 149 (773)
T ss_pred CceEEEEeCCCCHHH--HHHHHh--------------CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccH
Confidence 347777877654322 222221 2589999999997763 3444557999999999999865443
Q ss_pred HH--HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCC-CcchhhhHHHHHHHHHHHH
Q 005858 189 LY--NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS-SAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 189 ~~--~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~-~~~~~~~~~~~~~~L~~~l 265 (673)
.+ +.+....+.+++++|||||.++ ...+..+++-|.......+..|........... ...........+..++..+
T Consensus 150 ~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l 228 (773)
T PRK13766 150 VYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLL 228 (773)
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHH
Confidence 22 2222223456689999999876 566666666654332211111111111100000 0000111223456677777
Q ss_pred HHHHhhhhhhhhhhcCCccC---CCcccccHHHHHHHHHHHhh----------------------------------hHH
Q 005858 266 SAFMLRRTKQKLVECGHLML---PPLTEITVLQKKVYASILRK----------------------------------ELP 308 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~l---p~~~e~~~~Q~~~y~~~l~~----------------------------------~~~ 308 (673)
..++.++.+........... ....++...+..++..+... .+.
T Consensus 229 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~ 308 (773)
T PRK13766 229 NEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLE 308 (773)
T ss_pred HHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 77777766543211100000 01112222222222211100 000
Q ss_pred HHHhhccc---------cccc---------cccccccCCcHHHHHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHhC
Q 005858 309 KLLALSSR---------TANH---------QSLQNTASGKLVVLDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 309 ~l~~~~~~---------~~~~---------~~l~~~~s~Kl~~l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
.+...... .... .......++|+..|.++|.... ..+.|+||||++..+++.|.++|...
T Consensus 309 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~ 388 (773)
T PRK13766 309 RLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE 388 (773)
T ss_pred HHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC
Confidence 00000000 0000 0001224789999999998876 57889999999999999999999999
Q ss_pred CCcEEEEeCC--------cCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCc
Q 005858 369 KYSYERLDGS--------IRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNP 440 (673)
Q Consensus 369 g~~~~~i~G~--------~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp 440 (673)
|+++..++|. ++..+|..++++|+ .+ ..-+|++|.++++|+|++.+++||+||++|||
T Consensus 389 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-------------~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~ 454 (773)
T PRK13766 389 GIKAVRFVGQASKDGDKGMSQKEQIEILDKFR-------------AG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSE 454 (773)
T ss_pred CCceEEEEccccccccCCCCHHHHHHHHHHHH-------------cC-CCCEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 9999999997 88899999999998 23 34567888999999999999999999999999
Q ss_pred chHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 005858 441 QVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLS 485 (673)
Q Consensus 441 ~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~ 485 (673)
..+.||.||++|.|+ ..||.|++++|.||.+|....+|.+.+
T Consensus 455 ~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 455 IRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 999999998888765 678999999999999998877776555
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=9.8e-33 Score=311.18 Aligned_cols=207 Identities=29% Similarity=0.465 Sum_probs=157.5
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhc---------------CCCCCCEEEEECcccHHHHHHHHHHHCCCC-eEEEE
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFS---------------QMSPGPFLVLCPLSVTDGWVSEMAKFTPKL-EVLRY 117 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~---------------~~~~~~~LIV~P~sll~~W~~E~~k~~p~~-~v~~~ 117 (673)
.|..++++++||+|||...++.....+.. ....|.+|||||.+++.||-.|+.++++.. +++.|
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEE
Confidence 34567999999999999988776433211 123467999999999999999999999776 99999
Q ss_pred eCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc----------------------cccccCCCccEEE
Q 005858 118 VGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD----------------------QGFLSQIPWCYTI 175 (673)
Q Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~----------------------~~~l~~~~~~~vI 175 (673)
.|-...-- ..+.....+|||+|||+.++.+ ...+..+.|..||
T Consensus 453 ~Girk~~~---------------~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIc 517 (1394)
T KOG0298|consen 453 FGIRKTFW---------------LSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRIC 517 (1394)
T ss_pred echhhhcc---------------cCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHh
Confidence 88653211 1112345699999999999765 2335556799999
Q ss_pred EcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHH
Q 005858 176 IDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIK 255 (673)
Q Consensus 176 vDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 255 (673)
+|||+.+-..+|..++.+.. +++.++|+.||||+|+ +.+|+.||.||.-..|.....|-+....+.. ..
T Consensus 518 lDEaQMvesssS~~a~M~~r-L~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~---------~r 586 (1394)
T KOG0298|consen 518 LDEAQMVESSSSAAAEMVRR-LHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ---------LR 586 (1394)
T ss_pred hhHHHhhcchHHHHHHHHHH-hhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH---------HH
Confidence 99999999988888888876 9999999999999999 9999999999998889888888776655432 11
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCc
Q 005858 256 EQFTSLKGILSAFMLRRTKQKLVECGHLMLPPL 288 (673)
Q Consensus 256 ~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~ 288 (673)
.....+..+....+-|+.+.++.. .+.+||-
T Consensus 587 a~~~~~~dl~~q~l~R~~k~~v~~--el~~ppq 617 (1394)
T KOG0298|consen 587 AKCEPLLDLFKQLLWRTFKSKVEH--ELGLPPQ 617 (1394)
T ss_pred hhhhhHHHHHHhhhhhhhhHHHHH--HhCCCch
Confidence 233456667777777777777654 3446664
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-30 Score=269.07 Aligned_cols=414 Identities=21% Similarity=0.203 Sum_probs=263.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--C
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--P 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p 110 (673)
..+.|.||..-+.-.+. .+++++.++|||||+.|+.++.......+ +.+|+++|+ .++.|-..-+.+++ |
T Consensus 13 ~ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 13 TIEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred cccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCC
Confidence 57789999998766555 38999999999999999998885544332 368999996 78899999999887 6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc-
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS- 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s- 187 (673)
.-.+..+.|.-... .|...+.. -.|++.|++.+.+|. +.+.--.+.++|+|||||.-...+
T Consensus 86 ~~~i~~ltGev~p~--~R~~~w~~--------------~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY 149 (542)
T COG1111 86 EDEIAALTGEVRPE--EREELWAK--------------KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY 149 (542)
T ss_pred hhheeeecCCCChH--HHHHHHhh--------------CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH
Confidence 67788888864322 22222221 479999999999984 455666789999999999754332
Q ss_pred -HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCC---ChHHHHHHhhhhcc--CCCcchhhhHHHHHHHH
Q 005858 188 -VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFG---TLNQFLSTFKDAVH--SSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 188 -~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~---~~~~f~~~f~~~~~--~~~~~~~~~~~~~~~~L 261 (673)
...+.....-+.++.++|||||- ++...+-..+.-|.-+... ..+.=...|...+. -..-.-.....+....|
T Consensus 150 v~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l 228 (542)
T COG1111 150 VFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLL 228 (542)
T ss_pred HHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHH
Confidence 23333333244557899999995 4445555555444322110 00000011111000 00000011222222233
Q ss_pred HHHHHHHHhhhhhhh-hhhcCCccCCCcccccH-HHHH----------HHHHHH---------------h--------hh
Q 005858 262 KGILSAFMLRRTKQK-LVECGHLMLPPLTEITV-LQKK----------VYASIL---------------R--------KE 306 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~-v~~~~~~~lp~~~e~~~-~Q~~----------~y~~~l---------------~--------~~ 306 (673)
..++++.+ ...++. +..... .++ +.++.. .|.. .|+.+. + ..
T Consensus 229 ~~~l~~~L-k~L~~~g~~~~~~-~~~-~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 229 RDALKPRL-KPLKELGVIESSS-PVS-KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHH-HHHHHcCceeccC-ccc-HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 33333221 111100 000000 000 111100 0010 011000 0 00
Q ss_pred HHHHHhhccc------------ccccc--------ccccccCCcHHHHHHHHHHHH--hCCCeEEEEecCchHHHHHHHH
Q 005858 307 LPKLLALSSR------------TANHQ--------SLQNTASGKLVVLDLLLKKLY--NSGHRVLLFAQMTQTLDILQDF 364 (673)
Q Consensus 307 ~~~l~~~~~~------------~~~~~--------~l~~~~s~Kl~~l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~ 364 (673)
+..+...... ...+. .......+||..+.+++.+.. ..+.|+|||++|+.+++.|.++
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 0000000000 00000 111236899999999999887 5678999999999999999999
Q ss_pred HHhCCCcEE-EEeC--------CcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeC
Q 005858 365 LELRKYSYE-RLDG--------SIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435 (673)
Q Consensus 365 L~~~g~~~~-~i~G--------~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D 435 (673)
|...|.... ++-| +|++++..++|++|+ .+..-+|++|..|.+|||++.+|.|||||
T Consensus 386 L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr--------------~Ge~nVLVaTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 386 LKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR--------------KGEYNVLVATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred HHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh--------------cCCceEEEEcccccccCCCCcccEEEEec
Confidence 999988875 5555 589999999999999 44556688999999999999999999999
Q ss_pred CCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCC
Q 005858 436 QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491 (673)
Q Consensus 436 ~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~ 491 (673)
|.-+|....||.||.+| ++.=.||-|+++||-||.-|....+|.+-....+.+
T Consensus 452 pvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~ 504 (542)
T COG1111 452 PVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504 (542)
T ss_pred CCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 477889999999999999999999998766655543
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=5.1e-29 Score=277.84 Aligned_cols=330 Identities=14% Similarity=0.155 Sum_probs=223.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--C
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--P 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p 110 (673)
.+.|+|||.+++..++. +.++++..+||+|||++++.++..+.... ..++||+||. .++.||.+++.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 37899999999976665 36789999999999999877665543222 2379999997 78899999999986 3
Q ss_pred CCeE-EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH
Q 005858 111 KLEV-LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189 (673)
Q Consensus 111 ~~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~ 189 (673)
...+ .++.|... ....+|+|+|++.+.+....+ --.+++||+||||++.... .
T Consensus 186 ~~~~~~i~~g~~~-----------------------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~~--~ 239 (501)
T PHA02558 186 REAMHKIYSGTAK-----------------------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGKS--L 239 (501)
T ss_pred ccceeEEecCccc-----------------------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccchh--H
Confidence 3333 23333321 123589999999987644221 1367999999999986532 3
Q ss_pred HHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q 005858 190 YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269 (673)
Q Consensus 190 ~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 269 (673)
...+...-+++++++|||||..... ..+.+..++.|-....
T Consensus 240 ~~il~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~i~~~v-------------------------------------- 280 (501)
T PHA02558 240 TSIITKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGDIFKPV-------------------------------------- 280 (501)
T ss_pred HHHHHhhhccceEEEEeccCCCccc-cHHHHHHhhCCceEEe--------------------------------------
Confidence 4445442257789999999954322 1222222222211100
Q ss_pred hhhhhhhhhhcCCccCCCcc----cccHH-----HHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 270 LRRTKQKLVECGHLMLPPLT----EITVL-----QKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 270 lrr~k~~v~~~~~~~lp~~~----e~~~~-----Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
...++.+.+.+.-+... ..+.. ....|... ...+. ....+...+..++..
T Consensus 281 ---~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~l~--------------~~~~Rn~~I~~~~~~ 339 (501)
T PHA02558 281 ---TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEE----IKYIT--------------SHTKRNKWIANLALK 339 (501)
T ss_pred ---cHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHH----HHHHh--------------ccHHHHHHHHHHHHH
Confidence 00000000000000000 00000 00011110 00000 012344566677777
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
+...+.+++||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+ ++...++|+|++..|
T Consensus 340 ~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~-------------~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 340 LAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE-------------GGKGIIIVASYGVFS 406 (501)
T ss_pred HHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh-------------CCCCeEEEEEcceec
Confidence 7778899999999999999999999999999999999999999999999998 455567777779999
Q ss_pred cccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcC-eEEEEEEecCC
Q 005858 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMN-HVLSINLVTEH 468 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~Vy~lv~~~ 468 (673)
+|+|++.+++||+++|+.+...+.|++||++|.|..| .+.||.|+-.-
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999998765 69999998643
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.4e-28 Score=269.26 Aligned_cols=365 Identities=22% Similarity=0.263 Sum_probs=251.5
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.....+|+|||.+++.-+...+..++.|++..++|.|||+.++.++..+. .++|||||. .++.||.+.+.+++
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhc
Confidence 55678899999999988877666678899999999999999999998884 349999997 67899998888887
Q ss_pred CCC-eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCcc
Q 005858 110 PKL-EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 110 p~~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
... .+..+.|...... +..|.+.||+++.+. ...+..-.|++||+||||++..+.
T Consensus 105 ~~~~~~g~~~~~~~~~~----------------------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 105 LLNDEIGIYGGGEKELE----------------------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred CCccccceecCceeccC----------------------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH
Confidence 543 4555555442110 036999999999885 344445589999999999986655
Q ss_pred cHHHHHHHhhcCCCc-EEEEecCCCCCCHHHHHHHHHHhCCCCCCCh-HHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPR-RLLMTGTPIQNNLSELWALMHFCMPSVFGTL-NQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 187 s~~~~~l~~~~~~~~-rllLTGTPi~N~~~El~~ll~~l~p~~~~~~-~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
.+.. ...+...+ +++|||||...+......+..++.|-.+... .+... ...
T Consensus 163 ~~~~---~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~------------------------~g~ 215 (442)
T COG1061 163 YRRI---LELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELID------------------------EGY 215 (442)
T ss_pred HHHH---HHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHh------------------------CCC
Confidence 3322 23355566 9999999986665555555555544333210 00000 001
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcc-cc-ccccccccccCCcHHHHHHHHHHHH
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSS-RT-ANHQSLQNTASGKLVVLDLLLKKLY 342 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~-~~-~~~~~l~~~~s~Kl~~l~~ll~~~~ 342 (673)
+.|+.+.. ....++......|..........+..... .. ............|+..+..++....
T Consensus 216 Lap~~~~~--------------i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (442)
T COG1061 216 LAPYKYVE--------------IKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA 281 (442)
T ss_pred ccceEEEE--------------EEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 11111111 01112333333333222221110000000 00 0000111123456667777777655
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
.+.+++||+..+.....+...+...|+ +..++|.++..+|.++++.|+. ++ ..+|++++++++|
T Consensus 282 -~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~-------------g~-~~~lv~~~vl~EG 345 (442)
T COG1061 282 -RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT-------------GG-IKVLVTVKVLDEG 345 (442)
T ss_pred -CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc-------------CC-CCEEEEeeeccce
Confidence 789999999999999999999988888 8999999999999999999982 23 7789999999999
Q ss_pred cCCCCCCeeEeeCCCCCcchHHHHhHhhhcc-CCcCe--EEEEEEecCCCHHHHHHHHHHH
Q 005858 423 LNLVAADTVIFYEQDWNPQVDKQALQRAHRI-GQMNH--VLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 423 iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-GQ~k~--V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
+|++.++++|+..+.-++..+.|++||+.|. ..+.. +..|-++...+.+..+......
T Consensus 346 vDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 346 VDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9999999999999999999999999999994 44444 7777888888888777666554
No 27
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=8.5e-26 Score=253.82 Aligned_cols=321 Identities=20% Similarity=0.249 Sum_probs=213.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHH-HHHhhhcC---CCCC-CEEEEECc-ccHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISF-LSYLKFSQ---MSPG-PFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~-i~~l~~~~---~~~~-~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
++.|+|..++..++. +.+.|+..++|+|||++.+.. +..+.... ...+ .+|||||. .|..|+.+++.++.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 588999999876554 689999999999999986543 33322111 1112 37999997 67799999999987
Q ss_pred CC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 110 PK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.. +++....|........... ...++++|+|++.+.... ..+.-..+.+||+||||++-..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l---------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL---------------RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH---------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc
Confidence 43 4555555544333322211 113689999998875432 1222335789999999998764
Q ss_pred cc--HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 186 SS--VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 186 ~s--~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
.. .+.+.+...-..+..+++|||.- .++-.+.. .+...
T Consensus 293 gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~---------------~l~~~--------------------- 332 (545)
T PTZ00110 293 GFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR---------------DLCKE--------------------- 332 (545)
T ss_pred chHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH---------------HHhcc---------------------
Confidence 32 23344443223456789999952 12111111 00000
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN 343 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~ 343 (673)
.+..+ .+ +...+.... .. .+.........|...|..++..+..
T Consensus 333 --~~v~i-----~v---g~~~l~~~~--------------------------~i-~q~~~~~~~~~k~~~L~~ll~~~~~ 375 (545)
T PTZ00110 333 --EPVHV-----NV---GSLDLTACH--------------------------NI-KQEVFVVEEHEKRGKLKMLLQRIMR 375 (545)
T ss_pred --CCEEE-----EE---CCCccccCC--------------------------Ce-eEEEEEEechhHHHHHHHHHHHhcc
Confidence 00000 00 000000000 00 0000001123456667777777766
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+.++||||+....++.|...|...|+++..++|++++++|..+++.|+ .+...+|++|.++++||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~--------------~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFK--------------TGKSPIMIATDVASRGL 441 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHh--------------cCCCcEEEEcchhhcCC
Confidence 7889999999999999999999999999999999999999999999998 33445689999999999
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
|++.+++||+||+|+++..+.||+||++|.|..-. +|.|++.+
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999999999999999997644 35556554
No 28
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2e-25 Score=247.64 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=208.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..++|+|.+++.-++. +..+++..+||+|||+..+..+.. ..+.+|||+|. +++.++.+.+.... ..
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 3689999999987665 578999999999999876544322 23568999997 67788988887654 33
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccc-cCCCccEEEEcCCccccCcccH-
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFL-SQIPWCYTIIDEAQRLKNPSSV- 188 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l-~~~~~~~vIvDEaH~~KN~~s~- 188 (673)
...+.+....... ..+...+ ....++++++|++.+.... ..+ ...++.+|||||||.+......
T Consensus 78 ~~~l~~~~~~~~~--~~i~~~~---------~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 78 ATFLNSSQSKEQQ--KNVLTDL---------KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred EEEEeCCCCHHHH--HHHHHHH---------hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc
Confidence 4444444332211 1111111 2335789999999886543 222 3457899999999998653321
Q ss_pred --H---HHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 189 --L---YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 189 --~---~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
. ...+...++....++|||||-.....++...+.+-.|..+..
T Consensus 147 r~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-------------------------------- 194 (470)
T TIGR00614 147 RPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-------------------------------- 194 (470)
T ss_pred HHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC--------------------------------
Confidence 1 122333456677899999986554444444333222211100
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN 343 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~ 343 (673)
....|... . ......+..+..+..++.. ..
T Consensus 195 ------------------s~~r~nl~-~------------------------------~v~~~~~~~~~~l~~~l~~-~~ 224 (470)
T TIGR00614 195 ------------------SFDRPNLY-Y------------------------------EVRRKTPKILEDLLRFIRK-EF 224 (470)
T ss_pred ------------------CCCCCCcE-E------------------------------EEEeCCccHHHHHHHHHHH-hc
Confidence 00000000 0 0000000111122222221 23
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+.+.||||......+.+...|...|+.+..++|+++.++|..+++.|. .+..-+|++|.++|.||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~--------------~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ--------------RDEIQVVVATVAFGMGI 290 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH--------------cCCCcEEEEechhhccC
Confidence 5677899999999999999999999999999999999999999999998 33445678889999999
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
|++.+++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999999999999987665554
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=4.5e-25 Score=244.93 Aligned_cols=317 Identities=22% Similarity=0.311 Sum_probs=214.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---P 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p 110 (673)
..|.|+|.+++..++. +.+.|+..++|+|||+..+..+............+||+||. .+..||.+++.++. +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 3488999999987664 68899999999999987654443332222222248999997 67799999998764 5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS-- 186 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~-- 186 (673)
+.++..+.|.......... .....+++|+|++.+.... ..+.-..+++||+||||++-+..
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~---------------l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~ 165 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDS---------------LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQ 165 (460)
T ss_pred CcEEEEEECCCChHHHHHH---------------hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcH
Confidence 7888888876654433221 1135789999999886543 22333467899999999986543
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
......+...-.....+++|||+-. ++-.+.. .|...
T Consensus 166 ~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~---------------~~~~~------------------------ 202 (460)
T PRK11776 166 DAIDAIIRQAPARRQTLLFSATYPE----GIAAISQ---------------RFQRD------------------------ 202 (460)
T ss_pred HHHHHHHHhCCcccEEEEEEecCcH----HHHHHHH---------------HhcCC------------------------
Confidence 2233344332233457999999731 1111111 11000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+..+ .+... ...+... +..+......|+..+..++.. ..+.
T Consensus 203 ~~~i-----~~~~~--~~~~~i~------------------------------~~~~~~~~~~k~~~l~~ll~~--~~~~ 243 (460)
T PRK11776 203 PVEV-----KVEST--HDLPAIE------------------------------QRFYEVSPDERLPALQRLLLH--HQPE 243 (460)
T ss_pred CEEE-----EECcC--CCCCCee------------------------------EEEEEeCcHHHHHHHHHHHHh--cCCC
Confidence 0000 00000 0000000 000000112255666666654 3456
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
++||||+.....+.+.+.|...|+.+..++|++++.+|..+++.|+ .+..-+|++|++++.|||++
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~--------------~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA--------------NRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH--------------cCCCcEEEEecccccccchh
Confidence 8999999999999999999999999999999999999999999998 33445678899999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++++||+||+|.++..|.||+||++|.|+.- ..|.|+...
T Consensus 310 ~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 310 ALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999999999999763 345555543
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=6.7e-25 Score=241.96 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHH-Hhhhc---CCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLS-YLKFS---QMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~-~l~~~---~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.+|+|+|.+++..++. +.++++..++|+|||+..+..+. .+... ......+||++|. .++.|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4578999999987664 57899999999999998765443 33211 1122358999997 57788888887775
Q ss_pred --CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 110 --PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 --p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.++++..+.|......... . ....++|+|+|++.+.... ..+....+++||+||||++-..
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~-----~----------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~ 162 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAE-----V----------FSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM 162 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHH-----H----------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC
Confidence 3567777777654332211 1 1124689999999886542 3334456789999999998653
Q ss_pred c--cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 186 S--SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 186 ~--s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
. ................+++|||+-...+.++.. .+...
T Consensus 163 ~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~~~~~--------------------- 203 (434)
T PRK11192 163 GFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------RLLND--------------------- 203 (434)
T ss_pred CcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------HHccC---------------------
Confidence 3 222233332222345689999974222221111 11000
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN 343 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~ 343 (673)
+.. + . ..|..... ..+ ............|..+|..++.. .
T Consensus 204 ---~~~-------i-~----~~~~~~~~----------------~~i-------~~~~~~~~~~~~k~~~l~~l~~~--~ 243 (434)
T PRK11192 204 ---PVE-------V-E----AEPSRRER----------------KKI-------HQWYYRADDLEHKTALLCHLLKQ--P 243 (434)
T ss_pred ---CEE-------E-E----ecCCcccc----------------cCc-------eEEEEEeCCHHHHHHHHHHHHhc--C
Confidence 000 0 0 00000000 000 00000000012344455555542 3
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
...++||||.....++.+...|...|+.+..++|.++..+|..+++.|+ .+...+|++|++++.||
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~--------------~G~~~vLVaTd~~~~Gi 309 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLT--------------DGRVNVLVATDVAARGI 309 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHh--------------CCCCcEEEEccccccCc
Confidence 5679999999999999999999999999999999999999999999998 44556788889999999
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
|++.+++||+||+|+++..|.||+||++|.|..-.+.+
T Consensus 310 Dip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 310 DIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999999999999999998655444
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.8e-24 Score=240.78 Aligned_cols=317 Identities=18% Similarity=0.246 Sum_probs=209.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcCC------CCCCEEEEECc-ccHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQM------SPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~~------~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
..|+|||.+++..++. |.+.|+..++|+|||+..+..+ ..+..... ....+|||+|. .+..||.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 3589999999875543 6899999999999998866444 33322111 02358999997 67799999988
Q ss_pred HHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccc
Q 005858 107 KFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 107 k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~ 182 (673)
.+.. +..+..+.|..+.....+.. ....++++|+|++.+..... .+.-....+|||||+|.+
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~--------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL--------------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH--------------hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH
Confidence 7753 46777777765443322211 12347899999999865322 222235689999999998
Q ss_pred cCccc--HHHHHHHhhcC---CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 183 KNPSS--VLYNVLREHFL---MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 183 KN~~s--~~~~~l~~~~~---~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
.+... ...+.+.. +. ....+++|||... ++.++... ++. .+.
T Consensus 250 ~~~~~~~~l~~i~~~-~~~~~~~q~i~~SAT~~~-~~~~~~~~--~~~---------------~~~-------------- 296 (475)
T PRK01297 250 LDMGFIPQVRQIIRQ-TPRKEERQTLLFSATFTD-DVMNLAKQ--WTT---------------DPA-------------- 296 (475)
T ss_pred HhcccHHHHHHHHHh-CCCCCCceEEEEEeecCH-HHHHHHHH--hcc---------------CCE--------------
Confidence 76432 23333332 32 2457899999532 12211110 000 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
.+.-....+ ..+. . . ........+.|...+..+
T Consensus 297 -----------~v~~~~~~~------~~~~-~----------------------------~-~~~~~~~~~~k~~~l~~l 329 (475)
T PRK01297 297 -----------IVEIEPENV------ASDT-V----------------------------E-QHVYAVAGSDKYKLLYNL 329 (475)
T ss_pred -----------EEEeccCcC------CCCc-c----------------------------c-EEEEEecchhHHHHHHHH
Confidence 000000000 0000 0 0 000011123445555555
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR 417 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ 417 (673)
+.. ....++||||+....++.+...|...|+.+..++|.++.++|..+++.|+ .+..-+|++|+
T Consensus 330 l~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr--------------~G~~~vLvaT~ 393 (475)
T PRK01297 330 VTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR--------------EGKIRVLVATD 393 (475)
T ss_pred HHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh--------------CCCCcEEEEcc
Confidence 543 34569999999999999999999999999999999999999999999998 33445678899
Q ss_pred ccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 418 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 418 agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
++++|||+.++++||+|++|+++..+.|+.||++|.|+.-. ++.|+..
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 99999999999999999999999999999999999998643 3334443
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=1.4e-24 Score=240.27 Aligned_cols=312 Identities=17% Similarity=0.208 Sum_probs=205.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC------CCCCEEEEECc-ccHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM------SPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~------~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
..+.|+|.+++..++. +.++|+..++|+|||+..+..+........ ....+|||||. .+..||.+++.+
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 3688999999986654 578999999999999987655443322211 11248999997 677999999988
Q ss_pred HCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCcccc
Q 005858 108 FTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLK 183 (673)
Q Consensus 108 ~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~K 183 (673)
+.. ++.+....|.......... ....++|+|+|++.+.... ..+.-...++|||||||++-
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~~---------------l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMMK---------------LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML 162 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHHH---------------HcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHh
Confidence 763 4566666665543332211 1234799999999885532 22334467899999999986
Q ss_pred Cccc--HHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 184 NPSS--VLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 184 N~~s--~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
.... .+...+.. +.. ...+++|||+-. ...+ +...+.. .+..
T Consensus 163 ~~~~~~~i~~il~~-l~~~~q~l~~SAT~~~-~~~~---l~~~~~~--------------~~~~---------------- 207 (456)
T PRK10590 163 DMGFIHDIRRVLAK-LPAKRQNLLFSATFSD-DIKA---LAEKLLH--------------NPLE---------------- 207 (456)
T ss_pred ccccHHHHHHHHHh-CCccCeEEEEeCCCcH-HHHH---HHHHHcC--------------CCeE----------------
Confidence 5432 22333433 433 457899999631 1111 1111000 0000
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
+.-..... ..+..... . .......|..++..++..
T Consensus 208 ---------i~~~~~~~------~~~~i~~~-----------------------------~-~~~~~~~k~~~l~~l~~~ 242 (456)
T PRK10590 208 ---------IEVARRNT------ASEQVTQH-----------------------------V-HFVDKKRKRELLSQMIGK 242 (456)
T ss_pred ---------EEEecccc------cccceeEE-----------------------------E-EEcCHHHHHHHHHHHHHc
Confidence 00000000 00000000 0 000001122233333332
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
....++||||......+.+.+.|...|+.+..++|.++.++|..+++.|+ .+..-+|++|++++
T Consensus 243 --~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~--------------~g~~~iLVaTdv~~ 306 (456)
T PRK10590 243 --GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK--------------SGDIRVLVATDIAA 306 (456)
T ss_pred --CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH--------------cCCCcEEEEccHHh
Confidence 34579999999999999999999999999999999999999999999998 33445778999999
Q ss_pred cccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
.|||++.+++||+||+|.++..|.|++||++|.|..-.+.+
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 99999999999999999999999999999999998654433
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.8e-24 Score=237.50 Aligned_cols=316 Identities=16% Similarity=0.213 Sum_probs=209.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHH-hhhcC------CCCCCEEEEECc-ccHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSY-LKFSQ------MSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~-l~~~~------~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
..+.|.|.+++.-++. |.+.++..++|+|||+..+..+.. +.... .....+||+||. .++.||.+++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 3578999999876654 689999999999999987654432 32111 112348999997 67799998888
Q ss_pred HHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccc
Q 005858 107 KFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 107 k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~ 182 (673)
.+.. ++++..+.|.......... ....++|+|+|++.+.... ..+.-..+.+||+||||++
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~~---------------l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLKV---------------LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHHH---------------hcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHH
Confidence 7753 5677777765443322211 1124799999999886542 2334456789999999998
Q ss_pred cCcc--cHHHHHHHhhcCC---CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 183 KNPS--SVLYNVLREHFLM---PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 183 KN~~--s~~~~~l~~~~~~---~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
-+.. ......+.. ++. ...+++|||+-. ...++. ..++. .+.
T Consensus 170 ~~~~f~~~i~~i~~~-~~~~~~~~~~l~SAT~~~-~~~~~~--~~~~~---------------~p~-------------- 216 (423)
T PRK04837 170 FDLGFIKDIRWLFRR-MPPANQRLNMLFSATLSY-RVRELA--FEHMN---------------NPE-------------- 216 (423)
T ss_pred hhcccHHHHHHHHHh-CCCccceeEEEEeccCCH-HHHHHH--HHHCC---------------CCE--------------
Confidence 6543 222233332 332 235789999631 111110 00000 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
.+ .+.+..... ....+..+......|+..|..+
T Consensus 217 -----------~i-------------~v~~~~~~~-----------------------~~i~~~~~~~~~~~k~~~l~~l 249 (423)
T PRK04837 217 -----------YV-------------EVEPEQKTG-----------------------HRIKEELFYPSNEEKMRLLQTL 249 (423)
T ss_pred -----------EE-------------EEcCCCcCC-----------------------CceeEEEEeCCHHHHHHHHHHH
Confidence 00 000000000 0000000000112345556666
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR 417 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ 417 (673)
+.. ....++||||+....++.+...|...|+++..++|.++.++|..+++.|+ .+..-+|++|+
T Consensus 250 l~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~--------------~g~~~vLVaTd 313 (423)
T PRK04837 250 IEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT--------------RGDLDILVATD 313 (423)
T ss_pred HHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH--------------cCCCcEEEEec
Confidence 554 34679999999999999999999999999999999999999999999998 44456788999
Q ss_pred ccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 418 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 418 agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
++++|||++.+++||+||+|+++..|.|++||++|.|+.-. .+.|+++
T Consensus 314 v~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 314 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred hhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 99999999999999999999999999999999999996633 3445544
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=4.1e-24 Score=242.45 Aligned_cols=309 Identities=17% Similarity=0.198 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---P 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p 110 (673)
.++.|+|.+++..++. +..+|+..++|+|||++.+..+............+||+||. .++.||.+++.++. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4689999999987764 57899999999999998654443322222223358999997 67799999987764 5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc-
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS- 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s- 187 (673)
++.++.++|.......++. ....++|+|+|++.+.... ..+.-..+.+|||||||.+-+...
T Consensus 103 ~i~v~~~~gG~~~~~q~~~---------------l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~ 167 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRA---------------LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFI 167 (629)
T ss_pred CceEEEEECCcCHHHHHHH---------------hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccH
Confidence 7788777776543332221 1124689999999886542 223334678899999998765432
Q ss_pred -HHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 188 -VLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 188 -~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
.....+.. ++ ....+++|||+-. ...+ + ...|...
T Consensus 168 ~di~~Il~~-lp~~~q~llfSAT~p~-~i~~---i---------------~~~~l~~----------------------- 204 (629)
T PRK11634 168 EDVETIMAQ-IPEGHQTALFSATMPE-AIRR---I---------------TRRFMKE----------------------- 204 (629)
T ss_pred HHHHHHHHh-CCCCCeEEEEEccCCh-hHHH---H---------------HHHHcCC-----------------------
Confidence 23344443 43 3457899999521 1111 1 1111000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
+..+. + .......|. ..+..+......|...|..++.. ...
T Consensus 205 -~~~i~-----i-~~~~~~~~~------------------------------i~q~~~~v~~~~k~~~L~~~L~~--~~~ 245 (629)
T PRK11634 205 -PQEVR-----I-QSSVTTRPD------------------------------ISQSYWTVWGMRKNEALVRFLEA--EDF 245 (629)
T ss_pred -CeEEE-----c-cCccccCCc------------------------------eEEEEEEechhhHHHHHHHHHHh--cCC
Confidence 00000 0 000000000 00001111123355566666654 345
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCC
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL 425 (673)
.++||||......+.+...|...|+.+..++|.+++.+|..+++.|+ .+...+|++|++++.|||+
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr--------------~G~~~ILVATdv~arGIDi 311 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK--------------DGRLDILIATDVAARGLDV 311 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh--------------CCCCCEEEEcchHhcCCCc
Confidence 68999999999999999999999999999999999999999999998 4455678999999999999
Q ss_pred CCCCeeEeeCCCCCcchHHHHhHhhhccCCcCe
Q 005858 426 VAADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 426 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
+.+++||+||+|.++..|.|++||++|.|..-.
T Consensus 312 p~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 312 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 999999999999999999999999999997543
No 35
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.7e-25 Score=229.33 Aligned_cols=362 Identities=19% Similarity=0.295 Sum_probs=251.8
Q ss_pred HHHHHhhcccCcCCCCCCccccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCC
Q 005858 8 QVAAKIIHDNDERDGQTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPG 87 (673)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~ 87 (673)
++++++....+...+..+.+--| ...+||||...+..|..+-. .+.||+.-++|.|||+..+..++..+ +
T Consensus 277 PlLeEYDFRND~~npdl~idLKP---st~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~tik------K 346 (776)
T KOG1123|consen 277 PLLEEYDFRNDNVNPDLDIDLKP---STQIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAACTIK------K 346 (776)
T ss_pred hhhhhhccccCCCCCCCCcCcCc---ccccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeeeeec------c
Confidence 34566666666655555555555 78899999999987765511 23689999999999999998887764 6
Q ss_pred CEEEEECccc-HHHHHHHHHHHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--
Q 005858 88 PFLVLCPLSV-TDGWVSEMAKFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-- 162 (673)
Q Consensus 88 ~~LIV~P~sl-l~~W~~E~~k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-- 162 (673)
..||+|..++ +.||..+|..|.. +-.+..+..+...+ .+.+..|+|+||.++...
T Consensus 347 ~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--------------------~~~~~gvvvsTYsMva~t~k 406 (776)
T KOG1123|consen 347 SCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--------------------FPSGAGVVVTTYSMVAYTGK 406 (776)
T ss_pred cEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--------------------CCCCCcEEEEeeehhhhccc
Confidence 6899999865 7999999999982 34455565544321 455678999999998542
Q ss_pred --------cccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHh-CCCCCCChH
Q 005858 163 --------QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFC-MPSVFGTLN 233 (673)
Q Consensus 163 --------~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l-~p~~~~~~~ 233 (673)
..++....|.++++||.|.+ ....++.+.....+...++||||.+... |-..=|+|| .|.++..
T Consensus 407 RS~eaek~m~~l~~~EWGllllDEVHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-- 479 (776)
T KOG1123|consen 407 RSHEAEKIMDFLRGREWGLLLLDEVHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-- 479 (776)
T ss_pred ccHHHHHHHHHHhcCeeeeEEeehhccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--
Confidence 46678889999999999986 3455555555577888999999987542 111223443 3433321
Q ss_pred HHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCccc-ccHHHHHHHHHHHhhhHHHHHh
Q 005858 234 QFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE-ITVLQKKVYASILRKELPKLLA 312 (673)
Q Consensus 234 ~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e-~~~~Q~~~y~~~l~~~~~~l~~ 312 (673)
.| -++...+++.-....| ..++-.++|+.+++......
T Consensus 480 nW---------------------------------------mdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr-- 518 (776)
T KOG1123|consen 480 NW---------------------------------------MDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR-- 518 (776)
T ss_pred cH---------------------------------------HHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh--
Confidence 01 1111111111111111 23445577877776443321
Q ss_pred hccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 313 LSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 313 ~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
..|......|+.+..-+++.....|+|+||||..+-.+....-. .|-+ +|.|.+++.+|.++++.|+
T Consensus 519 --------~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAik---l~Kp--fIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 519 --------MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIK---LGKP--FIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred --------heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH---cCCc--eEECCCchhHHHHHHHhcc
Confidence 22333456788888888888888999999999877655544333 3444 6889999999999999999
Q ss_pred cchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCC-CcchHHHHhHhhhccCCc----CeEEEEEEecC
Q 005858 393 VQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDW-NPQVDKQALQRAHRIGQM----NHVLSINLVTE 467 (673)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~----k~V~Vy~lv~~ 467 (673)
.. ..+..+++ +++|.+.|+|+.|+.+|-+.++. +-....||.||+-|.... -+...|-||.+
T Consensus 586 ~n------------~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 586 TN------------PKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred cC------------CccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 55 33334444 57999999999999999998886 567788999999996532 26889999999
Q ss_pred CCHHHH
Q 005858 468 HTVEEV 473 (673)
Q Consensus 468 ~TiEe~ 473 (673)
+|.|..
T Consensus 653 DTqEM~ 658 (776)
T KOG1123|consen 653 DTQEMY 658 (776)
T ss_pred chHHHH
Confidence 997754
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=4.3e-24 Score=240.88 Aligned_cols=316 Identities=18% Similarity=0.224 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-------CCCCCEEEEECc-ccHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-------MSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-------~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
..+.|.|..++..++. +.+.|+..++|+|||+..+..+....... .....+|||||. .++.|+.+++.
T Consensus 30 ~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4689999999987664 68999999999999998766554332111 112358999997 67799999999
Q ss_pred HHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc---cccCCCccEEEEcCCcc
Q 005858 107 KFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQR 181 (673)
Q Consensus 107 k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~---~l~~~~~~~vIvDEaH~ 181 (673)
++.. ++++..++|.......... + ...++|+|+|++.+..... .+.-..+.+|||||||+
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~~~-----l----------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ 170 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQREL-----L----------QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR 170 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHHHH-----H----------hCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH
Confidence 8874 4566666775543322111 1 1247899999998865432 23344578999999999
Q ss_pred ccCccc--HHHHHHHhhcC---CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHH
Q 005858 182 LKNPSS--VLYNVLREHFL---MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKE 256 (673)
Q Consensus 182 ~KN~~s--~~~~~l~~~~~---~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 256 (673)
+-.... .....+.. ++ ....+++|||.- +.+.++.. .++. .+
T Consensus 171 lld~gf~~~i~~il~~-lp~~~~~q~ll~SATl~-~~v~~l~~--~~l~---------------~p-------------- 217 (572)
T PRK04537 171 MFDLGFIKDIRFLLRR-MPERGTRQTLLFSATLS-HRVLELAY--EHMN---------------EP-------------- 217 (572)
T ss_pred HhhcchHHHHHHHHHh-cccccCceEEEEeCCcc-HHHHHHHH--HHhc---------------CC--------------
Confidence 855321 22223322 33 345789999952 11111110 0000 00
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHH
Q 005858 257 QFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDL 336 (673)
Q Consensus 257 ~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ 336 (673)
..+......+ ..+.. .+.........|+..|..
T Consensus 218 -----------~~i~v~~~~~------~~~~i------------------------------~q~~~~~~~~~k~~~L~~ 250 (572)
T PRK04537 218 -----------EKLVVETETI------TAARV------------------------------RQRIYFPADEEKQTLLLG 250 (572)
T ss_pred -----------cEEEeccccc------cccce------------------------------eEEEEecCHHHHHHHHHH
Confidence 0000000000 00000 000000011224444555
Q ss_pred HHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEec
Q 005858 337 LLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST 416 (673)
Q Consensus 337 ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st 416 (673)
++.. ..+.++||||.....++.|.+.|...|+.+..++|.++..+|..+++.|+ .+..-+|++|
T Consensus 251 ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr--------------~G~~~VLVaT 314 (572)
T PRK04537 251 LLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQ--------------KGQLEILVAT 314 (572)
T ss_pred HHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH--------------cCCCeEEEEe
Confidence 5543 45789999999999999999999999999999999999999999999998 4455778899
Q ss_pred cccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 417 RAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 417 ~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
++++.|||+..+++||+||.|+++..|.|++||+.|.|..-.+ +.|++.
T Consensus 315 dv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred hhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 9999999999999999999999999999999999999986444 334443
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=6.4e-24 Score=241.90 Aligned_cols=304 Identities=17% Similarity=0.190 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..++|+|.+++.-++. +.++++..+||+|||+.....+... .+.+|||+|. +++.+|.+.+.... ..
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 3689999999986654 6889999999999999765443221 3568999997 77788988887654 34
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCccc----
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSS---- 187 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~s---- 187 (673)
...+.+........ ..+..+ .....+++++|++.+... ...+...++++|||||||.+-....
T Consensus 92 ~~~~~s~~~~~~~~--~~~~~~---------~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~ 160 (607)
T PRK11057 92 AACLNSTQTREQQL--EVMAGC---------RTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRP 160 (607)
T ss_pred EEEEcCCCCHHHHH--HHHHHH---------hCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccH
Confidence 44444433222211 112111 223578999999988643 2334556789999999999865321
Q ss_pred --HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 188 --VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 188 --~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
.....+...++....++||||+-.....++...+.+-.|..+..
T Consensus 161 ~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~---------------------------------- 206 (607)
T PRK11057 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS---------------------------------- 206 (607)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC----------------------------------
Confidence 11222333355667899999986655455444433222211000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
....|..... . .. ...++..+..++.. ..+
T Consensus 207 ----------------~~~r~nl~~~-v---------~~----------------------~~~~~~~l~~~l~~--~~~ 236 (607)
T PRK11057 207 ----------------SFDRPNIRYT-L---------VE----------------------KFKPLDQLMRYVQE--QRG 236 (607)
T ss_pred ----------------CCCCCcceee-e---------ee----------------------ccchHHHHHHHHHh--cCC
Confidence 0000100000 0 00 00111122223322 467
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCC
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL 425 (673)
.++||||......+.+...|...|+.+..++|+++.++|..+++.|. .+...+|++|.++|.|||+
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~--------------~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ--------------RDDLQIVVATVAFGMGINK 302 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH--------------CCCCCEEEEechhhccCCC
Confidence 89999999999999999999999999999999999999999999998 3334567888999999999
Q ss_pred CCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeE
Q 005858 426 VAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHV 459 (673)
Q Consensus 426 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 459 (673)
++++.||+||+|.++..|.|++||++|.|....+
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 9999999999999999999999999999976543
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.1e-23 Score=236.15 Aligned_cols=329 Identities=15% Similarity=0.176 Sum_probs=211.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHH-Hhhhc------CCCCCCEEEEECc-ccHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLS-YLKFS------QMSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~-~l~~~------~~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
..|.|+|.+++..++. |.+.|+..++|+|||+..+..+. .+... ......+|||+|. .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3689999999987663 68999999999999998765432 22211 1122358999997 67788988888
Q ss_pred HHCCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccc
Q 005858 107 KFTPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 107 k~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~ 182 (673)
.+... +++....|.......... ...+++++|+|++.+.... ..+.-....+||+||||++
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~---------------l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYR---------------IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHH---------------hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHH
Confidence 87643 344444444332222211 1124789999999875432 1233345689999999998
Q ss_pred cCcc--cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 183 KNPS--SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 183 KN~~--s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
.... ....+.+.. ++.+..+++|||.-. ... .+...+..+.
T Consensus 283 l~~gf~~~i~~i~~~-l~~~q~l~~SATl~~-~v~---~l~~~~~~~~-------------------------------- 325 (518)
T PLN00206 283 LERGFRDQVMQIFQA-LSQPQVLLFSATVSP-EVE---KFASSLAKDI-------------------------------- 325 (518)
T ss_pred hhcchHHHHHHHHHh-CCCCcEEEEEeeCCH-HHH---HHHHHhCCCC--------------------------------
Confidence 6543 223344443 566788999999632 111 1111110000
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
..+. + +....|... ..| ..+......|...+..++..
T Consensus 326 -------~~i~-----~---~~~~~~~~~---v~q-------------------------~~~~~~~~~k~~~l~~~l~~ 362 (518)
T PLN00206 326 -------ILIS-----I---GNPNRPNKA---VKQ-------------------------LAIWVETKQKKQKLFDILKS 362 (518)
T ss_pred -------EEEE-----e---CCCCCCCcc---eeE-------------------------EEEeccchhHHHHHHHHHHh
Confidence 0000 0 000000000 000 00000011233345555554
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHh-CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLEL-RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
......++|||+......+.+.+.|.. .|+.+..++|+++.++|..+++.|+ .+..-+|++|.++
T Consensus 363 ~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr--------------~G~~~ILVaTdvl 428 (518)
T PLN00206 363 KQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFL--------------VGEVPVIVATGVL 428 (518)
T ss_pred hcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHH--------------CCCCCEEEEecHh
Confidence 444456899999999999999999975 5999999999999999999999998 3334568999999
Q ss_pred ccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 420 GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
+.|||++.+++||+||+|.++..|.|++||++|.|..- .++.|+..+ |..++..+..
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~--~~~~~~~l~~ 485 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE--DRNLFPELVA 485 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh--HHHHHHHHHH
Confidence 99999999999999999999999999999999999653 344455543 3334443333
No 39
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=227.44 Aligned_cols=414 Identities=19% Similarity=0.195 Sum_probs=248.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.-...||+||.+-+.-.+ +.|+|+|-+||+|||..|+.++..+.+-... +.+++.+|+ .++.|-...+..++.
T Consensus 58 p~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cCcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccC
Confidence 345789999999886544 5799999999999999998888777555544 668999997 567777788877774
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccC---CCccEEEEcCCcccc-Cc-
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQ---IPWCYTIIDEAQRLK-NP- 185 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~---~~~~~vIvDEaH~~K-N~- 185 (673)
...+....|+...+.... .++. ..+|++.|++.+.++...... ..|.++|+||||+.. |.
T Consensus 132 ~~~~T~~l~~~~~~~~r~-~i~~--------------s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 132 PYSVTGQLGDTVPRSNRG-EIVA--------------SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred cccceeeccCccCCCchh-hhhc--------------ccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 455555555533322221 1111 258999999999988654433 348999999999964 31
Q ss_pred ccHHHHH-HHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCC--ChHHHHHHhhhhccCCCcc--hhhhHHHHHHH
Q 005858 186 SSVLYNV-LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFG--TLNQFLSTFKDAVHSSSAP--KRGKIKEQFTS 260 (673)
Q Consensus 186 ~s~~~~~-l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~--~~~~f~~~f~~~~~~~~~~--~~~~~~~~~~~ 260 (673)
.+..-+. +.......+.|+|||||- ++....-+.+.=|..+ +. +...-...|.........+ ........-..
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~ 274 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDP 274 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhh
Confidence 2222222 222223347899999998 6666666655544443 21 1111133333221111111 11112223344
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccH-------------HHHH-HHHHHHhhh------------HHHHHh--
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITV-------------LQKK-VYASILRKE------------LPKLLA-- 312 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~-------------~Q~~-~y~~~l~~~------------~~~l~~-- 312 (673)
|..+++|++.+-....+..-..... ..+..+ .|+. +|...+... ...+..
T Consensus 275 f~~~i~p~l~~l~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~ 352 (746)
T KOG0354|consen 275 FGMIIEPLLQQLQEEGLIEISDKST--SYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLE 352 (746)
T ss_pred HHHHHHHHHHHHHhcCccccccccc--cccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Confidence 5556666554433322211000000 000000 1110 111111100 000000
Q ss_pred -h------------ccccccc------------cccc-cccCCcHHHHHHHHHHHHh--CCCeEEEEecCchHHHHHHHH
Q 005858 313 -L------------SSRTANH------------QSLQ-NTASGKLVVLDLLLKKLYN--SGHRVLLFAQMTQTLDILQDF 364 (673)
Q Consensus 313 -~------------~~~~~~~------------~~l~-~~~s~Kl~~l~~ll~~~~~--~g~kvlIFsq~~~~ld~l~~~ 364 (673)
. ......+ .... ...++|+..+.+++.+... ...|+|||+.++..++.|..+
T Consensus 353 ~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~ 432 (746)
T KOG0354|consen 353 DFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKW 432 (746)
T ss_pred hhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHH
Confidence 0 0000000 0000 0258899999998887764 457999999999999999999
Q ss_pred HH-hC--CCcEEEEeC--------CcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe
Q 005858 365 LE-LR--KYSYERLDG--------SIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF 433 (673)
Q Consensus 365 L~-~~--g~~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~ 433 (673)
|. .. |+....+-| ++++.+..+.++.|+ .|..-+|++|..|.+|||...||-||-
T Consensus 433 l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr--------------~G~~NvLVATSV~EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 433 LLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR--------------DGEINVLVATSVAEEGLDIGECNLVIC 498 (746)
T ss_pred HHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh--------------CCCccEEEEecchhccCCcccccEEEE
Confidence 97 22 455555544 567889999999999 455667889999999999999999999
Q ss_pred eCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHH-HHHHHHHhHhcC
Q 005858 434 YEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRA-ERKLRLSHNVVG 490 (673)
Q Consensus 434 ~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~-~~K~~l~~~vi~ 490 (673)
||..-||..+.||+|| +|. +.-.++.+.+ +.+...+++. ..|..+....+.
T Consensus 499 Yd~~snpIrmIQrrGR-gRa---~ns~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 499 YDYSSNPIRMVQRRGR-GRA---RNSKCVLLTT--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred ecCCccHHHHHHHhcc-ccc---cCCeEEEEEc--chhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999 774 4444444555 3455544443 356566555544
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=1.6e-23 Score=239.18 Aligned_cols=304 Identities=22% Similarity=0.233 Sum_probs=209.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeE
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEV 114 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v 114 (673)
+++|+|.+++.-++. |.+++++.+||.|||+.....+. . ..+.++||+|. +++.++.+.+.... ..+
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~g--i~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAAG--VAA 80 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHcC--CcE
Confidence 689999999986664 57899999999999998764432 1 23568999996 77888988888754 455
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCccc---HH
Q 005858 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSS---VL 189 (673)
Q Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~s---~~ 189 (673)
..+++........ .....+ .....+++++|++.+... ...+......+|||||||.+..... ..
T Consensus 81 ~~~~s~~~~~~~~--~~~~~l---------~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~ 149 (591)
T TIGR01389 81 AYLNSTLSAKEQQ--DIEKAL---------VNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPE 149 (591)
T ss_pred EEEeCCCCHHHHH--HHHHHH---------hCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHH
Confidence 5555544332211 111111 234578999999988543 2345566889999999999864221 11
Q ss_pred H---HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 190 Y---NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 190 ~---~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
+ ..+...++....+++|||+-.....++...+.+-.|..+.+ .|
T Consensus 150 y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~--------------------------- 196 (591)
T TIGR01389 150 YQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF--------------------------- 196 (591)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC---------------------------
Confidence 1 12223355556899999986555555444333211111000 00
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
..|..... ......+...+..++.. ..+.
T Consensus 197 -----------------~r~nl~~~--------------------------------v~~~~~~~~~l~~~l~~--~~~~ 225 (591)
T TIGR01389 197 -----------------DRPNLRFS--------------------------------VVKKNNKQKFLLDYLKK--HRGQ 225 (591)
T ss_pred -----------------CCCCcEEE--------------------------------EEeCCCHHHHHHHHHHh--cCCC
Confidence 00000000 00001222334444443 2367
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
+.||||......+.+...|...|+++..+||+++.++|..+++.|. .+...+|++|.++|.|||++
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~--------------~g~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFL--------------YDDVKVMVATNAFGMGIDKP 291 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH--------------cCCCcEEEEechhhccCcCC
Confidence 9999999999999999999999999999999999999999999998 34456788999999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEE
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 460 (673)
+++.||+|++|.|+..+.|++||++|.|+...+.
T Consensus 292 ~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 292 NVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999765543
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=3.2e-23 Score=226.52 Aligned_cols=318 Identities=19% Similarity=0.224 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|.|+|..++..+.. +.+.++..++|+|||+.++..+............+||++|. .++.|+.+.+..+.. ..
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999999977654 57899999999999998765544433222234458999997 567888888777763 34
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--cH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS--SV 188 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~--s~ 188 (673)
.+....|....+.... .. ....+++|+|++.+.... ..+.-..+++||+||+|++.... ..
T Consensus 126 ~~~~~~g~~~~~~~~~-----~~----------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~ 190 (401)
T PTZ00424 126 RCHACVGGTVVRDDIN-----KL----------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQ 190 (401)
T ss_pred eEEEEECCcCHHHHHH-----HH----------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHH
Confidence 4444555543322211 11 123589999999875432 22333467899999999976533 23
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
....+.......+.+++|||+-. ...++. ..|...
T Consensus 191 ~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~------------------~~~~~~-------------------------- 225 (401)
T PTZ00424 191 IYDVFKKLPPDVQVALFSATMPN-EILELT------------------TKFMRD-------------------------- 225 (401)
T ss_pred HHHHHhhCCCCcEEEEEEecCCH-HHHHHH------------------HHHcCC--------------------------
Confidence 44445442234567999999632 111110 011000
Q ss_pred HhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 269 MLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
............+...... .........+...+..++.. ....++
T Consensus 226 ----~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~--~~~~~~ 270 (401)
T PTZ00424 226 ----PKRILVKKDELTLEGIRQF-----------------------------YVAVEKEEWKFDTLCDLYET--LTITQA 270 (401)
T ss_pred ----CEEEEeCCCCcccCCceEE-----------------------------EEecChHHHHHHHHHHHHHh--cCCCeE
Confidence 0000000000000000000 00000001122233333332 245689
Q ss_pred EEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCC
Q 005858 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA 428 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a 428 (673)
||||.....++.+...|...++.+..++|+++.++|..+++.|+ .+...+|++|.++++|||++.+
T Consensus 271 ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~--------------~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 271 IIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR--------------SGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred EEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH--------------cCCCCEEEEcccccCCcCcccC
Confidence 99999999999999999999999999999999999999999998 3444678899999999999999
Q ss_pred CeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 429 DTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 429 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++||++|+|.++..+.|++||++|.|.. -.++.|++..
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHH
Confidence 9999999999999999999999998854 3455566554
No 42
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.7e-23 Score=222.91 Aligned_cols=316 Identities=21% Similarity=0.266 Sum_probs=219.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHH-HHHHhhh----cCCCCCC-EEEEECc-ccHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS-FLSYLKF----SQMSPGP-FLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~-~i~~l~~----~~~~~~~-~LIV~P~-sll~~W~~E~~k 107 (673)
..+.|-|..+...++. |+.++....+|+|||+.-+. ++.++.. .....+| +||++|+ .+..|..+++.+
T Consensus 112 ~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4577788777544443 68999999999999997553 3333332 1122344 8999998 677999999999
Q ss_pred HCCCCe--EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCcccc
Q 005858 108 FTPKLE--VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLK 183 (673)
Q Consensus 108 ~~p~~~--v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~K 183 (673)
+...+. .....|......+++.. ..+.+|+|.|+..+.... ..+.-.+..|+|+|||.++-
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l---------------~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDL---------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRML 252 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHH---------------hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhh
Confidence 986544 44444444334433331 234799999999986653 34455578899999999986
Q ss_pred C--cccHHHHHHHhhcCCCc-EEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 184 N--PSSVLYNVLREHFLMPR-RLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 184 N--~~s~~~~~l~~~~~~~~-rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
. ...+..+.+....++.+ .++.|+|-- .+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~~-------------------------------------------- 284 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWP----KE-------------------------------------------- 284 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeecc----HH--------------------------------------------
Confidence 5 45667778876324544 788899821 11
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
++.+-..|+-.-..-.+. .+.++. .......+.. ......|...|..+|..
T Consensus 285 v~~lA~~fl~~~~~i~ig--------~~~~~~----------a~~~i~qive-----------~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 285 VRQLAEDFLNNPIQINVG--------NKKELK----------ANHNIRQIVE-----------VCDETAKLRKLGKLLED 335 (519)
T ss_pred HHHHHHHHhcCceEEEec--------chhhhh----------hhcchhhhhh-----------hcCHHHHHHHHHHHHHH
Confidence 111111222100000000 000000 0000000100 11135677778888888
Q ss_pred HH-hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 341 LY-NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 341 ~~-~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
+. ..+.|+||||+.....+.|...|...+|+...|||..++.+|...++.|. ++.+-+|++|+++
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr--------------eG~~~vLVATdVA 401 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR--------------EGKSPVLVATDVA 401 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc--------------cCCcceEEEcccc
Confidence 86 55679999999999999999999999999999999999999999999998 6677889999999
Q ss_pred ccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEE
Q 005858 420 GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVL 460 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 460 (673)
+.|||+...++||+||+|-|...|.+|+||.+|.|++=...
T Consensus 402 aRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred cccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 99999999999999999999999999999999988764433
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=210.44 Aligned_cols=326 Identities=21% Similarity=0.226 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHH-HHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI-SFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--P 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai-~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p 110 (673)
..+.+-|.+++..++. |..+|.+.++|+|||..-+ -++..|.. .+..-..||++|. .+..|....|+.+. .
T Consensus 82 ~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred CCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 3566778888766554 5889999999999999854 44555543 3333447999998 56688888888886 4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCccccCcc-
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQRLKNPS- 186 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~~KN~~- 186 (673)
++++.+..|..+....... ....++++|.|+..+..+... |.--...++|+|||.++-|..
T Consensus 157 glr~~~lvGG~~m~~q~~~---------------L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF 221 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMMLQANQ---------------LSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDF 221 (476)
T ss_pred CeEEEEEecCchHHHHHHH---------------hhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhh
Confidence 6788888888776554332 223478999999999876543 333356799999999998854
Q ss_pred -cHHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 187 -SVLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 187 -s~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
-.+..++.. ++. +..++.|||.- .+... |.
T Consensus 222 ~~~ld~ILk~-ip~erqt~LfsATMt-~kv~k--------------------------------------------L~-- 253 (476)
T KOG0330|consen 222 EEELDYILKV-IPRERQTFLFSATMT-KKVRK--------------------------------------------LQ-- 253 (476)
T ss_pred HHHHHHHHHh-cCccceEEEEEeecc-hhhHH--------------------------------------------HH--
Confidence 346667765 554 45588999942 11111 11
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS 344 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~ 344 (673)
...++.... +..+.+....+.-++.|- .-...-|-..|..+|++. .
T Consensus 254 --rasl~~p~~-------v~~s~ky~tv~~lkQ~yl-----------------------fv~~k~K~~yLV~ll~e~--~ 299 (476)
T KOG0330|consen 254 --RASLDNPVK-------VAVSSKYQTVDHLKQTYL-----------------------FVPGKDKDTYLVYLLNEL--A 299 (476)
T ss_pred --hhccCCCeE-------EeccchhcchHHhhhheE-----------------------eccccccchhHHHHHHhh--c
Confidence 000000000 011111111111111111 111223444577777764 5
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccC
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLN 424 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiN 424 (673)
|..+||||....+.+.+.-+|+..|+....++|.|++..|..+++.|+ .+.+-+|++|++++.|+|
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk--------------~~~r~iLv~TDVaSRGLD 365 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK--------------AGARSILVCTDVASRGLD 365 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHh--------------ccCCcEEEecchhcccCC
Confidence 689999999999999999999999999999999999999999999998 667788999999999999
Q ss_pred CCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 425 LVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 425 L~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
.+.++.||+||.|-+...|++|.||+.|.| +.-.++.||+. .|-..+++.+.
T Consensus 366 ip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrIE~ 417 (476)
T KOG0330|consen 366 IPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRIEH 417 (476)
T ss_pred CCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHHHH
Confidence 999999999999999999999999999999 67778889988 66666666543
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=4e-23 Score=237.81 Aligned_cols=312 Identities=19% Similarity=0.193 Sum_probs=204.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..++|+|.+++..++. |..+|+..++|.|||+.....+.. ..+.+|||+|. +|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 4799999999986654 689999999999999986554432 13568999997 6766555555443 455
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccc---c-CCCccEEEEcCCccccCcc
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFL---S-QIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l---~-~~~~~~vIvDEaH~~KN~~ 186 (673)
...+.+......... ++..+.. ....++++++|++.+.... ..+ . ...+.+|||||||.+-...
T Consensus 527 Aa~L~s~~s~~eq~~--ilr~l~s-------~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 527 AASLSAGMEWAEQLE--ILQELSS-------EYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWG 597 (1195)
T ss_pred EEEEECCCCHHHHHH--HHHHHHh-------cCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcc
Confidence 554555433222111 1111110 1245799999999875421 111 1 2337899999999986532
Q ss_pred cH---HH---HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 187 SV---LY---NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 187 s~---~~---~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
.. -+ ..+...++....++||||.-.....++...|.+..+..+ ...|.
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf------r~Sf~-------------------- 651 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF------RQSFN-------------------- 651 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe------ecccC--------------------
Confidence 11 11 234444666778999999866555555444332211110 00000
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
.|... +.+. ......+..+..++..
T Consensus 652 ------------------------RpNL~-y~Vv------------------------------~k~kk~le~L~~~I~~ 676 (1195)
T PLN03137 652 ------------------------RPNLW-YSVV------------------------------PKTKKCLEDIDKFIKE 676 (1195)
T ss_pred ------------------------ccceE-EEEe------------------------------ccchhHHHHHHHHHHh
Confidence 01000 0000 0000001112222221
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
. ..+...||||......+.+...|...|+.+..++|+++.++|..+++.|. .+...+|++|.++|
T Consensus 677 ~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~--------------~Gei~VLVATdAFG 741 (1195)
T PLN03137 677 N-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWS--------------KDEINIICATVAFG 741 (1195)
T ss_pred c-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHh--------------cCCCcEEEEechhh
Confidence 1 12457899999999999999999999999999999999999999999998 33445678899999
Q ss_pred cccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEE
Q 005858 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~ 463 (673)
.|||++..+.||+|++|.++..|.|++||++|.|+.-.+..|+
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999999999999999999876655543
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=5.6e-22 Score=226.95 Aligned_cols=311 Identities=19% Similarity=0.253 Sum_probs=204.6
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
.+.++|.++|..++..+....... .+.+|..+||+|||+.++..+...... ...++|++|. .+..||.+++.++
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHH
Confidence 556789999999999988765433 368999999999999887555443322 3468999998 5669999999999
Q ss_pred CC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 109 TP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 109 ~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
++ ++++..++|+...... ......+ ....++++|.|+..+..... + .+.++||+||+|++.-
T Consensus 308 ~~~~gi~v~lltg~~~~~~r--~~~~~~i---------~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~fg~-- 371 (630)
T TIGR00643 308 LAPLGIEVALLTGSLKGKRR--KELLETI---------ASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHRFGV-- 371 (630)
T ss_pred hcccCcEEEEEecCCCHHHH--HHHHHHH---------hCCCCCEEEecHHHHhcccc-c--cccceEEEechhhccH--
Confidence 86 4788888886543321 1112221 23457999999998864322 2 3568999999999732
Q ss_pred cHHHHHHHhhcC---CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 187 SVLYNVLREHFL---MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 187 s~~~~~l~~~~~---~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
.....+..... .++.++|||||++..+. +.. |...
T Consensus 372 -~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~----------------~~~l--------------------- 409 (630)
T TIGR00643 372 -EQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTV----------------YGDL--------------------- 409 (630)
T ss_pred -HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHh----------------cCCc---------------------
Confidence 22223333233 57789999999864322 100 0000
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcc-cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHH
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLT-EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLY 342 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~-e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~ 342 (673)
.... .. .+|+.. .+. . ..........+...+....
T Consensus 410 --~~~~--------i~----~~p~~r~~i~----------------------------~--~~~~~~~~~~~~~~i~~~l 445 (630)
T TIGR00643 410 --DTSI--------ID----ELPPGRKPIT----------------------------T--VLIKHDEKDIVYEFIEEEI 445 (630)
T ss_pred --ceee--------ec----cCCCCCCceE----------------------------E--EEeCcchHHHHHHHHHHHH
Confidence 0000 00 011100 000 0 0000011112333344444
Q ss_pred hCCCeEEEEecCch--------HHHHHHHHHHh--CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEE
Q 005858 343 NSGHRVLLFAQMTQ--------TLDILQDFLEL--RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVF 412 (673)
Q Consensus 343 ~~g~kvlIFsq~~~--------~ld~l~~~L~~--~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vl 412 (673)
..|++++|||.... ....+.+.|.. .++.+..++|.++.++|.+++++|+ .+...+
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~--------------~g~~~I 511 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFR--------------EGEVDI 511 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHH--------------cCCCCE
Confidence 67889999997652 23344555543 3788999999999999999999998 344567
Q ss_pred EEeccccccccCCCCCCeeEeeCCCC-CcchHHHHhHhhhccCCcCeEEE
Q 005858 413 MISTRAGGVGLNLVAADTVIFYEQDW-NPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 413 L~st~agg~GiNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
|++|.+.++|||+++++.||+++++. +.+.+.|+.||++|.|..-.+.+
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 78889999999999999999999884 77889999999999987654443
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=5.5e-22 Score=228.47 Aligned_cols=311 Identities=18% Similarity=0.193 Sum_probs=205.1
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
..+.++|.++|..++..+......+ .+.+|..+||+|||+.++..+...... ...+||++|+ .+..|+.+.+.+
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHH
Confidence 3456789999999999888765443 468999999999999988666443322 3458999998 566999999999
Q ss_pred HCCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc
Q 005858 108 FTPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 108 ~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
+++. +++..++|+....... .....+ ....++++|.|+..+.... .+ .+.++||+||+|++.
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r~--~~~~~l---------~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKERR--EILEAI---------ASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHHH--HHHHHH---------hCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhh--
Confidence 8864 7778888875433221 111111 2335799999998875422 12 356899999999973
Q ss_pred ccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 186 SSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 186 ~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
......+......++.++|||||++..+. +.. |....
T Consensus 397 -~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~----------------~g~~~---------------------- 433 (681)
T PRK10917 397 -VEQRLALREKGENPHVLVMTATPIPRTLA----MTA----------------YGDLD---------------------- 433 (681)
T ss_pred -HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHH----------------cCCCc----------------------
Confidence 22333444333457889999999753221 100 00000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcc-cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLT-EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS 344 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~-e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~ 344 (673)
. . +.. .+|+.. .+. .......+...+...+......
T Consensus 434 -~-------s-~i~----~~p~~r~~i~------------------------------~~~~~~~~~~~~~~~i~~~~~~ 470 (681)
T PRK10917 434 -V-------S-VID----ELPPGRKPIT------------------------------TVVIPDSRRDEVYERIREEIAK 470 (681)
T ss_pred -e-------E-EEe----cCCCCCCCcE------------------------------EEEeCcccHHHHHHHHHHHHHc
Confidence 0 0 000 011100 000 0000111122233344444478
Q ss_pred CCeEEEEecCch--------HHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 345 GHRVLLFAQMTQ--------TLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 345 g~kvlIFsq~~~--------~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
|++++|||.... ....+.+.|... ++++..+||.++.++|..++++|. .+...+|+
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~--------------~g~~~ILV 536 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFK--------------AGEIDILV 536 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHH--------------cCCCCEEE
Confidence 899999997542 234445555544 578999999999999999999998 34446778
Q ss_pred eccccccccCCCCCCeeEeeCCCC-CcchHHHHhHhhhccCCcCeEE
Q 005858 415 STRAGGVGLNLVAADTVIFYEQDW-NPQVDKQALQRAHRIGQMNHVL 460 (673)
Q Consensus 415 st~agg~GiNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~ 460 (673)
+|.+.+.|||+++++.||+++++. ..+.+.|+.||++|.|..-.+.
T Consensus 537 aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 537 ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 889999999999999999999985 5788999999999998754443
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=2.8e-22 Score=234.15 Aligned_cols=314 Identities=17% Similarity=0.176 Sum_probs=206.5
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
.+.++|.|.|..++..+...+..+ .+.+++.+||+|||.+++..+...... ...++|+||+ .+..|....|.++
T Consensus 447 ~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 447 SFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred hCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 356679999999999988866544 468999999999999887554333222 2468999998 5669999999988
Q ss_pred CCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 109 TPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 109 ~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
+.. +++..++|........ .....+ .....+++|+|+..+.... .| .+..+|||||+|++..
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~~--~~~~~l---------~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEahrfgv-- 587 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQN--EILKEL---------ASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQRFGV-- 587 (926)
T ss_pred hccCCcEEEEEeccccHHHHH--HHHHHH---------HcCCceEEEchHHHhhCCC-Cc--ccCCEEEeecccccch--
Confidence 754 4555565543322111 111111 1234789999997764332 22 3458999999999732
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHH-hCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHF-CMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~-l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
.....+.........++|||||++..+.. .+.. .++..
T Consensus 588 -~~~~~L~~~~~~~~vL~~SATpiprtl~~---~l~g~~d~s~------------------------------------- 626 (926)
T TIGR00580 588 -KQKEKLKELRTSVDVLTLSATPIPRTLHM---SMSGIRDLSI------------------------------------- 626 (926)
T ss_pred -hHHHHHHhcCCCCCEEEEecCCCHHHHHH---HHhcCCCcEE-------------------------------------
Confidence 23344544334567899999997643221 1100 00000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
+..||.....+ . .. +.. .+. ..+...+......|
T Consensus 627 -----------------I~~~p~~R~~V----------~----------t~------v~~-~~~--~~i~~~i~~el~~g 660 (926)
T TIGR00580 627 -----------------IATPPEDRLPV----------R----------TF------VME-YDP--ELVREAIRRELLRG 660 (926)
T ss_pred -----------------EecCCCCccce----------E----------EE------EEe-cCH--HHHHHHHHHHHHcC
Confidence 00111110000 0 00 000 000 11111222223467
Q ss_pred CeEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 346 HRVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+++|||+....++.+.+.|... ++++..+||.++.++|.+++++|. .+...+|+||.+.+.||
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~--------------~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY--------------KGEFQVLVCTTIIETGI 726 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH--------------cCCCCEEEECChhhccc
Confidence 89999999999999999999874 788999999999999999999998 44456788899999999
Q ss_pred CCCCCCeeEeeCCC-CCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 424 NLVAADTVIFYEQD-WNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 424 NL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
|++.+++||+++++ +....+.|+.||++|.|..- ++|.++..
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 99999999999986 46678899999999988643 44455543
No 48
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=2.8e-22 Score=238.11 Aligned_cols=357 Identities=18% Similarity=0.180 Sum_probs=204.7
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHhcCC-CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRYLLG-VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~~~~-~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
|......|||||.+||..+...+..+ ++++|.+.+|+|||+++++++..+..... .+++|++||. .|+.||.++|..
T Consensus 407 ~~~~~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 407 PFDYGLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKR-FRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-cCeEEEEecHHHHHHHHHHHHHh
Confidence 33335689999999998887766543 57999999999999999999887755443 4569999995 788999999988
Q ss_pred HCCCCe-EE-EEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc-------cccCCCccEEEEcC
Q 005858 108 FTPKLE-VL-RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG-------FLSQIPWCYTIIDE 178 (673)
Q Consensus 108 ~~p~~~-v~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~-------~l~~~~~~~vIvDE 178 (673)
+.+... .+ ...+.. .+... .......|+|+|+..+.+... .+.--.|++||+||
T Consensus 486 ~~~~~~~~~~~i~~i~----~L~~~-------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDE 548 (1123)
T PRK11448 486 TKIEGDQTFASIYDIK----GLEDK-------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDE 548 (1123)
T ss_pred cccccccchhhhhchh----hhhhh-------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEEC
Confidence 753221 11 001100 00000 012346899999999865421 12334689999999
Q ss_pred CccccCcc----------------cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 005858 179 AQRLKNPS----------------SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDA 242 (673)
Q Consensus 179 aH~~KN~~----------------s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~ 242 (673)
|||..... ...++.+...+ ...+|+|||||..+. .++| +.+
T Consensus 549 aHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t-~~~F---------------------G~p 605 (1123)
T PRK11448 549 AHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHT-TEIF---------------------GEP 605 (1123)
T ss_pred CCCCCccccccccchhccchhhhHHHHHHHHHhhc-CccEEEEecCCccch-hHHh---------------------CCe
Confidence 99953100 12334443323 357899999998543 1111 111
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHH----HHHhhhhhhhhhhcCCccCCCccc---ccHHHHHH----HHHHHhhhHHHHH
Q 005858 243 VHSSSAPKRGKIKEQFTSLKGILS----AFMLRRTKQKLVECGHLMLPPLTE---ITVLQKKV----YASILRKELPKLL 311 (673)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~~l~----~~~lrr~k~~v~~~~~~~lp~~~e---~~~~Q~~~----y~~~l~~~~~~l~ 311 (673)
+..+.- .+.+.. ..+- |+.+. ++ +... .+......+ .......+ +..-+.-....+.
T Consensus 606 v~~Ysl------~eAI~D--G~Lv~~~~p~~i~-t~--~~~~-gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~ 673 (1123)
T PRK11448 606 VYTYSY------REAVID--GYLIDHEPPIRIE-TR--LSQE-GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFN 673 (1123)
T ss_pred eEEeeH------HHHHhc--CCcccCcCCEEEE-EE--eccc-cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHH
Confidence 110000 000000 0000 00000 00 0000 000000000 00000000 0000000000000
Q ss_pred hhccccccccccccccCCcH-HHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHHhC------CC---cEEEEeCCcC
Q 005858 312 ALSSRTANHQSLQNTASGKL-VVLDLLLKKLYN-SGHRVLLFAQMTQTLDILQDFLELR------KY---SYERLDGSIR 380 (673)
Q Consensus 312 ~~~~~~~~~~~l~~~~s~Kl-~~l~~ll~~~~~-~g~kvlIFsq~~~~ld~l~~~L~~~------g~---~~~~i~G~~~ 380 (673)
... .+ .... .++..++..+.. .+.|.||||.....++.+.+.|... ++ .+..++|+++
T Consensus 674 ~~v---------i~--~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~ 742 (1123)
T PRK11448 674 RRV---------IT--ESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID 742 (1123)
T ss_pred HHH---------hh--HHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc
Confidence 000 00 0000 122333333322 2369999999999888887776542 22 3567999986
Q ss_pred HHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCC---cC
Q 005858 381 AEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ---MN 457 (673)
Q Consensus 381 ~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ---~k 457 (673)
++.+++++|. ++....+++|++..++|+|.+.+++||++.++-++..+.|++||+.|..- +.
T Consensus 743 --~~~~li~~Fk-------------~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~ 807 (1123)
T PRK11448 743 --KPDQLIRRFK-------------NERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKT 807 (1123)
T ss_pred --chHHHHHHHh-------------CCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCc
Confidence 5778999998 33444788999999999999999999999999999999999999999754 55
Q ss_pred eEEEEEEe
Q 005858 458 HVLSINLV 465 (673)
Q Consensus 458 ~V~Vy~lv 465 (673)
...||.++
T Consensus 808 ~f~I~D~v 815 (1123)
T PRK11448 808 HFRIFDAV 815 (1123)
T ss_pred eEEEEehH
Confidence 67777765
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=1.5e-21 Score=225.88 Aligned_cols=334 Identities=19% Similarity=0.200 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC-CCCe
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT-PKLE 113 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~-p~~~ 113 (673)
+|+|||.+++..+.. |.+.++..+||+|||+..+..+....... ....+||++|. .+..|-.+++.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999976643 68999999999999998765543332222 23358999997 66688888888876 3578
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--------cccCCCccEEEEcCCccccCc
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--------FLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--------~l~~~~~~~vIvDEaH~~KN~ 185 (673)
+.++.|+...... ..+ ....+++|+|++++....- .+ .+..+||+||+|.+...
T Consensus 111 v~~~~Gdt~~~~r--~~i--------------~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 111 PATYDGDTPTEER--RWA--------------REHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGV 172 (742)
T ss_pred EEEEeCCCCHHHH--HHH--------------hcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCc
Confidence 8888887653321 111 1125899999999864211 12 24589999999998652
Q ss_pred -ccHHHHHHHhh------c-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 186 -SSVLYNVLREH------F-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 186 -~s~~~~~l~~~------~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
.+.....+... + ..+..+++|||. .| +.++.. .+..... . .+......
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi-~n-~~~~~~---~l~g~~~----------~-~i~~~~~~-------- 228 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATT-AD-PAAAAS---RLIGAPV----------V-AVTEDGSP-------- 228 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CC-HHHHHH---HHcCCCe----------E-EECCCCCC--------
Confidence 22333332221 1 224678999994 23 333321 1110000 0 00000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
+....+ .+..|+..+.. .... .... .+ .......+
T Consensus 229 --------------~~~~~~----~~~~p~~~~~~----------------------~~~~--~~~r--~~-~~~~~~~~ 263 (742)
T TIGR03817 229 --------------RGARTV----ALWEPPLTELT----------------------GENG--APVR--RS-ASAEAADL 263 (742)
T ss_pred --------------cCceEE----EEecCCccccc----------------------cccc--cccc--cc-hHHHHHHH
Confidence 000000 00011111000 0000 0000 00 00112233
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHhC--------CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCc
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLELR--------KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDA 409 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~--------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~ 409 (673)
+..+...+.++||||+.+...+.+..+|... +..+..++|++++++|.++.++|+ ++.
T Consensus 264 l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~--------------~G~ 329 (742)
T TIGR03817 264 LADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR--------------DGE 329 (742)
T ss_pred HHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH--------------cCC
Confidence 4444456889999999999999999887653 567788999999999999999998 455
Q ss_pred EEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHH
Q 005858 410 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 410 ~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~ 477 (673)
..+|++|++++.|||+...++||+|+.|-++..+.||+||++|.|+.-. ++.++..+..|.+++..
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~~ 395 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVHH 395 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHhC
Confidence 5678999999999999999999999999999999999999999997643 44556666777775543
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=1.3e-21 Score=233.40 Aligned_cols=310 Identities=17% Similarity=0.196 Sum_probs=204.0
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAK 107 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k 107 (673)
..+.+.|.|.|..++.-+...+..+ .+.+++.+||+|||.+++..+..... ....+||+||.. +..|..+.|.+
T Consensus 595 ~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4556789999999998887765443 57899999999999987644332221 235699999985 55888888887
Q ss_pred HCCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc
Q 005858 108 FTPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 108 ~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
++.. +++..+.|......... ....+ .....+|+|+|++.+.... .-.++++|||||+|++..
T Consensus 672 ~~~~~~v~i~~l~g~~s~~e~~~--il~~l---------~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrfG~- 736 (1147)
T PRK10689 672 RFANWPVRIEMLSRFRSAKEQTQ--ILAEA---------AEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRFGV- 736 (1147)
T ss_pred hhccCCceEEEEECCCCHHHHHH--HHHHH---------HhCCCCEEEECHHHHhCCC---CHhhCCEEEEechhhcch-
Confidence 6643 45555655433222111 11111 1234789999998775332 223578999999999832
Q ss_pred ccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHh-CCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 186 SSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFC-MPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 186 ~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
.....+........++++||||++..+.- .+..+ +|..
T Consensus 737 --~~~e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl~d~~~------------------------------------ 775 (1147)
T PRK10689 737 --RHKERIKAMRADVDILTLTATPIPRTLNM---AMSGMRDLSI------------------------------------ 775 (1147)
T ss_pred --hHHHHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhCCCcEE------------------------------------
Confidence 22344444334567899999998654221 11111 1100
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS 344 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~ 344 (673)
+..||.....+. . .... .........++..+. .
T Consensus 776 ------------------I~~~p~~r~~v~--------------------~------~~~~--~~~~~~k~~il~el~-r 808 (1147)
T PRK10689 776 ------------------IATPPARRLAVK--------------------T------FVRE--YDSLVVREAILREIL-R 808 (1147)
T ss_pred ------------------EecCCCCCCCce--------------------E------EEEe--cCcHHHHHHHHHHHh-c
Confidence 011111100000 0 0000 000011223344443 4
Q ss_pred CCeEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
+++++|||+....++.+.+.|... +..+..+||.++.++|.+++.+|. .+..-+|++|.+.+.|
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr--------------~Gk~~VLVaTdIierG 874 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--------------HQRFNVLVCTTIIETG 874 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH--------------hcCCCEEEECchhhcc
Confidence 679999999999889999999876 788999999999999999999998 3344568888999999
Q ss_pred cCCCCCCeeEeeCCC-CCcchHHHHhHhhhccCCcCeEE
Q 005858 423 LNLVAADTVIFYEQD-WNPQVDKQALQRAHRIGQMNHVL 460 (673)
Q Consensus 423 iNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~ 460 (673)
||++++++||+.+++ ++...+.|+.||++|.|..-.++
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 999999999988775 67788999999999998764433
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=1.2e-21 Score=231.06 Aligned_cols=325 Identities=17% Similarity=0.163 Sum_probs=200.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcC-----CCCCCEEEEECc-ccHHHHHHHH--
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQ-----MSPGPFLVLCPL-SVTDGWVSEM-- 105 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~-----~~~~~~LIV~P~-sll~~W~~E~-- 105 (673)
..|+|+|..++..+. .|.++++..+||+|||+.++..+ ..+.... .....+|+|+|. .+..++.+.+
T Consensus 31 ~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 359999999987653 36899999999999999876544 3333211 112248999997 5666665533
Q ss_pred -----HHHC-------CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--c--cCC
Q 005858 106 -----AKFT-------PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--L--SQI 169 (673)
Q Consensus 106 -----~k~~-------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l--~~~ 169 (673)
.+++ +.+++.+.+|+.......+. ...+++++|+|++.+...... + .-.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~---------------l~~~p~IlVtTPE~L~~ll~~~~~~~~l~ 171 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM---------------LKKPPHILITTPESLAILLNSPKFREKLR 171 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH---------------HhCCCCEEEecHHHHHHHhcChhHHHHHh
Confidence 2332 36788888887654432221 112479999999988533211 1 012
Q ss_pred CccEEEEcCCccccCcc--cHHH---HHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhc
Q 005858 170 PWCYTIIDEAQRLKNPS--SVLY---NVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAV 243 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~--s~~~---~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~ 243 (673)
+.++||+||+|.+-+.. ..+. ..+.... ....+++||||+- ++.++. .++...... ...
T Consensus 172 ~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va---~~L~~~~~~---------~~~- 236 (876)
T PRK13767 172 TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVA---KFLVGYEDD---------GEP- 236 (876)
T ss_pred cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHH---HHhcCcccc---------CCC-
Confidence 46899999999987532 1111 2222222 3457899999962 233332 222211000 000
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHHHHhhhh--hhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccc
Q 005858 244 HSSSAPKRGKIKEQFTSLKGILSAFMLRRT--KQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQ 321 (673)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~--k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~ 321 (673)
.+..+... .....- ....|. ..+ + .
T Consensus 237 ----------------------r~~~iv~~~~~k~~~i--~v~~p~-~~l-------~----~----------------- 263 (876)
T PRK13767 237 ----------------------RDCEIVDARFVKPFDI--KVISPV-DDL-------I----H----------------- 263 (876)
T ss_pred ----------------------CceEEEccCCCccceE--EEeccC-ccc-------c----c-----------------
Confidence 00000000 000000 000010 000 0 0
Q ss_pred ccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC------CCcEEEEeCCcCHHHHHHHHHhhccch
Q 005858 322 SLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR------KYSYERLDGSIRAEERFAAIRHFSVQS 395 (673)
Q Consensus 322 ~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~------g~~~~~i~G~~~~~~R~~~i~~F~~~~ 395 (673)
.........+...+..+...++++||||+.....+.+...|... +..+..++|+++.++|..+.+.|+
T Consensus 264 ---~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk--- 337 (876)
T PRK13767 264 ---TPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK--- 337 (876)
T ss_pred ---cccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH---
Confidence 00000011223344444556789999999999999988888752 467889999999999999999998
Q ss_pred hHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc-CCcCeEEEEE
Q 005858 396 AIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI-GQMNHVLSIN 463 (673)
Q Consensus 396 ~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-GQ~k~V~Vy~ 463 (673)
++...+|++|.+++.|||+...+.||++++|.++..+.||+||++|. |....-.++-
T Consensus 338 -----------~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 338 -----------RGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred -----------cCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 34446788999999999999999999999999999999999999986 4444444443
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.4e-21 Score=215.95 Aligned_cols=331 Identities=23% Similarity=0.301 Sum_probs=225.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCC-EEEEECc-ccHHHHHHHHHHHCC-
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGP-FLVLCPL-SVTDGWVSEMAKFTP- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~-~LIV~P~-sll~~W~~E~~k~~p- 110 (673)
..+.|.|..++..++. |...+....+|+|||+.-+.-+...... .....+ +||++|+ .+..|..+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 4577889888876555 5889999999999999765444333321 222222 8999998 677899999988764
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc
Q 005858 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 111 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
.+++..+.|........... .. +++++|.|+..+.... ..+.-.+..++|+|||.++-+..
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l--------------~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL--------------KR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH--------------hc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC
Confidence 56677777765554444221 11 3799999999887542 34566678899999999998854
Q ss_pred c--HHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 187 S--VLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 187 s--~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
. .+...+.. .+. +..++.|||.-. ...+ +
T Consensus 191 f~~~i~~I~~~-~p~~~qtllfSAT~~~-~i~~---l------------------------------------------- 222 (513)
T COG0513 191 FIDDIEKILKA-LPPDRQTLLFSATMPD-DIRE---L------------------------------------------- 222 (513)
T ss_pred CHHHHHHHHHh-CCcccEEEEEecCCCH-HHHH---H-------------------------------------------
Confidence 2 34455544 443 567899999532 1111 1
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccC-CcHHHHHHHHHHHH
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTAS-GKLVVLDLLLKKLY 342 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s-~Kl~~l~~ll~~~~ 342 (673)
...++- -|...++.... . ........+..+..... .|+..|..++...
T Consensus 223 -~~~~l~--------------~p~~i~v~~~~--------------~-~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~- 271 (513)
T COG0513 223 -ARRYLN--------------DPVEIEVSVEK--------------L-ERTLKKIKQFYLEVESEEEKLELLLKLLKDE- 271 (513)
T ss_pred -HHHHcc--------------CCcEEEEcccc--------------c-cccccCceEEEEEeCCHHHHHHHHHHHHhcC-
Confidence 111110 00000000000 0 00000000111111111 4777788887763
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
...++||||......+.|...|...|+++..|||++++++|.+.++.|+ .+..-+|++|++++.|
T Consensus 272 -~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~--------------~g~~~vLVaTDvaaRG 336 (513)
T COG0513 272 -DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK--------------DGELRVLVATDVAARG 336 (513)
T ss_pred -CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH--------------cCCCCEEEEechhhcc
Confidence 3347999999999999999999999999999999999999999999999 4455678899999999
Q ss_pred cCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHH
Q 005858 423 LNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481 (673)
Q Consensus 423 iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K 481 (673)
|++...++||+||+|.++..|.+|+||.+|.|. .=..+.|++. .-|...+..+...
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~--~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR--KGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCC--CCeEEEEeCc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999993 3355566665 2356666666555
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.87 E-value=3.6e-20 Score=216.41 Aligned_cols=321 Identities=20% Similarity=0.141 Sum_probs=200.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC-CC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-KL 112 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-~~ 112 (673)
.+|+|+|.+++.-++ ..+.+++++.+||+|||+.+...+..... ..+.+|+|+|. +++.|+.+++.++.+ +.
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 469999999986533 34789999999999999998654433222 24568999996 788999999988753 67
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCcc-cHH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNPS-SVL 189 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~~-s~~ 189 (673)
++..+.|+...... .....+++|+|++.+...... ..-...++||+||+|.+.+.. ...
T Consensus 96 ~v~~~tGd~~~~~~------------------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~ 157 (737)
T PRK02362 96 RVGISTGDYDSRDE------------------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPT 157 (737)
T ss_pred EEEEEeCCcCcccc------------------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHH
Confidence 88888886532211 112468999999987443211 111246899999999987533 122
Q ss_pred HHH----HHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 190 YNV----LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 190 ~~~----l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
... ++......+.++||||+- +..++... +....+.+ .+
T Consensus 158 le~il~rl~~~~~~~qii~lSATl~--n~~~la~w---l~~~~~~~------~~-------------------------- 200 (737)
T PRK02362 158 LEVTLAKLRRLNPDLQVVALSATIG--NADELADW---LDAELVDS------EW-------------------------- 200 (737)
T ss_pred HHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHHH---hCCCcccC------CC--------------------------
Confidence 222 222124457899999963 34554432 22211110 00
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
+|.-++. .+........+. . ...+. ...+...+ .++......+
T Consensus 201 rpv~l~~---~v~~~~~~~~~~------~-------------------------~~~~~--~~~~~~~~-~~~~~~~~~~ 243 (737)
T PRK02362 201 RPIDLRE---GVFYGGAIHFDD------S-------------------------QREVE--VPSKDDTL-NLVLDTLEEG 243 (737)
T ss_pred CCCCCee---eEecCCeecccc------c-------------------------cccCC--CccchHHH-HHHHHHHHcC
Confidence 0000000 000000000000 0 00000 00111112 2233333578
Q ss_pred CeEEEEecCchHHHHHHHHHHhC------------------------------------CCcEEEEeCCcCHHHHHHHHH
Q 005858 346 HRVLLFAQMTQTLDILQDFLELR------------------------------------KYSYERLDGSIRAEERFAAIR 389 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~------------------------------------g~~~~~i~G~~~~~~R~~~i~ 389 (673)
+++||||..+...+.+...|... ...+..++|+++.++|..+.+
T Consensus 244 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~ 323 (737)
T PRK02362 244 GQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVED 323 (737)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHH
Confidence 89999999988776666555422 135778899999999999999
Q ss_pred hhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eC-----CCCCcchHHHHhHhhhccCCcCeEE
Q 005858 390 HFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YE-----QDWNPQVDKQALQRAHRIGQMNHVL 460 (673)
Q Consensus 390 ~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D-----~~wnp~~~~Qa~gR~~RiGQ~k~V~ 460 (673)
.|+ .+..-+|++|.+++.|+|+++...||. || .|.++..+.|++||++|.|....-.
T Consensus 324 ~Fr--------------~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 324 AFR--------------DRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred HHH--------------cCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 998 455567899999999999999887776 76 5788899999999999999876545
Q ss_pred EEEEecC
Q 005858 461 SINLVTE 467 (673)
Q Consensus 461 Vy~lv~~ 467 (673)
++.++..
T Consensus 390 ~ii~~~~ 396 (737)
T PRK02362 390 AVLLAKS 396 (737)
T ss_pred EEEEecC
Confidence 5555543
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.4e-19 Score=192.87 Aligned_cols=324 Identities=17% Similarity=0.156 Sum_probs=193.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHH---HHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRR---TMYE 133 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~---~~~~ 133 (673)
.++..+||+|||.+++.++...... ....++++|+|. +++.|+.+.+..++.. ++..++|.......... ....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 5788999999999998887665433 344568999996 7889999999988644 44445554332110000 0000
Q ss_pred HHHhhhccCCCCCCCCCEEEecHHHHHhcccc-c-------cCCCccEEEEcCCccccCcccH-HHHHHHhhc-CCCcEE
Q 005858 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-L-------SQIPWCYTIIDEAQRLKNPSSV-LYNVLREHF-LMPRRL 203 (673)
Q Consensus 134 ~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-l-------~~~~~~~vIvDEaH~~KN~~s~-~~~~l~~~~-~~~~rl 203 (673)
................+++++|++.+...... + ......+||+||+|.+...... ....+.... .....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 00000000001122467999999988654322 1 2223478999999998653221 222222111 235679
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 005858 204 LMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHL 283 (673)
Q Consensus 204 lLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~ 283 (673)
++|||+- +.+. .|+ ..+..... ..
T Consensus 160 ~~SATlp-~~l~------~~~------------~~~~~~~~-------------------------------------~~ 183 (358)
T TIGR01587 160 LMSATLP-KFLK------EYA------------EKIGYVEF-------------------------------------NE 183 (358)
T ss_pred EEecCch-HHHH------HHH------------hcCCCccc-------------------------------------cc
Confidence 9999962 1111 110 00000000 00
Q ss_pred cCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccc--cccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHH
Q 005858 284 MLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQS--LQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDIL 361 (673)
Q Consensus 284 ~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~--l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l 361 (673)
..+. .... ....+.. .......|...+..++..+ ..+.++||||+.....+.+
T Consensus 184 ~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~ 238 (358)
T TIGR01587 184 PLDL-KEER-----------------------RFERHRFIKIESDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEF 238 (358)
T ss_pred CCCC-cccc-----------------------ccccccceeeccccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHH
Confidence 0000 0000 0000000 0001123455566666443 4578999999999999999
Q ss_pred HHHHHhCCC--cEEEEeCCcCHHHHHHH----HHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeC
Q 005858 362 QDFLELRKY--SYERLDGSIRAEERFAA----IRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435 (673)
Q Consensus 362 ~~~L~~~g~--~~~~i~G~~~~~~R~~~----i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D 435 (673)
...|...+. .+..++|.++..+|.+. ++.|. .+...+|++|++++.|||+ .++.||.++
T Consensus 239 ~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~--------------~~~~~ilvaT~~~~~GiDi-~~~~vi~~~ 303 (358)
T TIGR01587 239 YQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMK--------------KNEKFVIVATQVIEASLDI-SADVMITEL 303 (358)
T ss_pred HHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhc--------------CCCCeEEEECcchhceecc-CCCEEEEcC
Confidence 999988776 48999999999999764 78887 3445678899999999999 588988887
Q ss_pred CCCCcchHHHHhHhhhccCCcC----eEEEEEEecCC---CHHHHHHHHHHHH
Q 005858 436 QDWNPQVDKQALQRAHRIGQMN----HVLSINLVTEH---TVEEVIMRRAERK 481 (673)
Q Consensus 436 ~~wnp~~~~Qa~gR~~RiGQ~k----~V~Vy~lv~~~---TiEe~i~~~~~~K 481 (673)
.+ +..+.||+||++|.|... .|+||.....+ ..+..++++-.++
T Consensus 304 ~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 304 AP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred CC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 65 889999999999999754 46666555444 4455555554443
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.85 E-value=3.5e-19 Score=206.61 Aligned_cols=313 Identities=20% Similarity=0.176 Sum_probs=194.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC-CC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT-PK 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~-p~ 111 (673)
.++|+|+|.+++..+ ..+.+++++.+||+|||+++...+...... .+.+++|+|. +++.++.+++.++. .+
T Consensus 20 ~~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 20 DFELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred CCCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 457999999999865 346899999999999999887655443322 3468999996 77899999998765 25
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCcc-cH
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNPS-SV 188 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~~-s~ 188 (673)
.++....|+....... ....+++|+|++.+...... ..-.++++||+||+|.+.+.. ..
T Consensus 93 ~~v~~~~G~~~~~~~~------------------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~ 154 (674)
T PRK01172 93 MRVKISIGDYDDPPDF------------------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGP 154 (674)
T ss_pred CeEEEEeCCCCCChhh------------------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccH
Confidence 6676676754322111 11368999999876432111 112246899999999986532 11
Q ss_pred HHHHH----HhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 189 LYNVL----REHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 189 ~~~~l----~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
....+ .......+.++||||+- +..++- .++....+.. .|.
T Consensus 155 ~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl~~~~~~~------~~r------------------------ 199 (674)
T PRK01172 155 TLETVLSSARYVNPDARILALSATVS--NANELA---QWLNASLIKS------NFR------------------------ 199 (674)
T ss_pred HHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHhCCCccCC------CCC------------------------
Confidence 22222 11113456799999962 233332 2222211100 000
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS 344 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~ 344 (673)
..|....+... ...+. ... ...+. .+..++......
T Consensus 200 -------------------~vpl~~~i~~~-~~~~~-------------~~~----------~~~~~-~~~~~i~~~~~~ 235 (674)
T PRK01172 200 -------------------PVPLKLGILYR-KRLIL-------------DGY----------ERSQV-DINSLIKETVND 235 (674)
T ss_pred -------------------CCCeEEEEEec-Ceeee-------------ccc----------ccccc-cHHHHHHHHHhC
Confidence 00100000000 00000 000 00000 133445555567
Q ss_pred CCeEEEEecCchHHHHHHHHHHhC-------------------------CCcEEEEeCCcCHHHHHHHHHhhccchhHhh
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELR-------------------------KYSYERLDGSIRAEERFAAIRHFSVQSAIER 399 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~-------------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~ 399 (673)
++++|||+......+.+...|... ...+..++|+++.++|..+.+.|+
T Consensus 236 ~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~------- 308 (674)
T PRK01172 236 GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR------- 308 (674)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH-------
Confidence 889999999988877777666432 123667899999999999999998
Q ss_pred hhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCC---------CCCcchHHHHhHhhhccCCcCeEEEEEEe
Q 005858 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQ---------DWNPQVDKQALQRAHRIGQMNHVLSINLV 465 (673)
Q Consensus 400 ~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~---------~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv 465 (673)
.+..-+|++|.+++.|+|+++ .+||+.+. ++++..+.|++||++|.|....-..+-++
T Consensus 309 -------~g~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 309 -------NRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred -------cCCCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 445567889999999999986 57777654 35778899999999999976653333333
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.84 E-value=2.7e-19 Score=208.54 Aligned_cols=320 Identities=18% Similarity=0.120 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHH-HHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC-C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI-SFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai-~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-~ 111 (673)
.+|+|+|.+++.-. +..+.+++++.++|+|||+.+. +++..+.. ..+.+|+|+|. +++.++.+++.+|.. +
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 46899999998632 2347899999999999999985 44444332 23568999996 677999988887642 5
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCc--cc
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNP--SS 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~--~s 187 (673)
.++..+.|+....... ...++++|+|++.+...... ..-.+.++||+||+|.+... ..
T Consensus 96 ~~v~~~~Gd~~~~~~~------------------~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~ 157 (720)
T PRK00254 96 LRVAMTTGDYDSTDEW------------------LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGA 157 (720)
T ss_pred CEEEEEeCCCCCchhh------------------hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchH
Confidence 7788788865432110 12368999999987543211 11135689999999998643 23
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
.+...+.......+.++||||+- +..++-. ++....+.. .+ +|
T Consensus 158 ~le~il~~l~~~~qiI~lSATl~--n~~~la~---wl~~~~~~~------~~--------------------------rp 200 (720)
T PRK00254 158 TLEMILTHMLGRAQILGLSATVG--NAEELAE---WLNAELVVS------DW--------------------------RP 200 (720)
T ss_pred HHHHHHHhcCcCCcEEEEEccCC--CHHHHHH---HhCCccccC------CC--------------------------CC
Confidence 33344444334567899999963 2455443 222211100 00 00
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCe
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~k 347 (673)
.|....+.. +...+ ... ... ......+..++......+.+
T Consensus 201 -----------------v~l~~~~~~-~~~~~---~~~---------~~~----------~~~~~~~~~~~~~~i~~~~~ 240 (720)
T PRK00254 201 -----------------VKLRKGVFY-QGFLF---WED---------GKI----------ERFPNSWESLVYDAVKKGKG 240 (720)
T ss_pred -----------------CcceeeEec-CCeee---ccC---------cch----------hcchHHHHHHHHHHHHhCCC
Confidence 000000000 00000 000 000 00001112233333446789
Q ss_pred EEEEecCchHHHHHHHHHHh---------------------------------CCCcEEEEeCCcCHHHHHHHHHhhccc
Q 005858 348 VLLFAQMTQTLDILQDFLEL---------------------------------RKYSYERLDGSIRAEERFAAIRHFSVQ 394 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~---------------------------------~g~~~~~i~G~~~~~~R~~~i~~F~~~ 394 (673)
+||||..+...+.+...|.. ....+..++|+++.++|..+.+.|+
T Consensus 241 vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~-- 318 (720)
T PRK00254 241 ALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR-- 318 (720)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH--
Confidence 99999888765544433311 1235788999999999999999998
Q ss_pred hhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe-------eCCCC-CcchHHHHhHhhhccCCcCeEEEEEEec
Q 005858 395 SAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF-------YEQDW-NPQVDKQALQRAHRIGQMNHVLSINLVT 466 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~-------~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~ 466 (673)
.+..-+|++|.+.+.|+|+++.+.||. ++.+. ....+.|++||++|.|..+.-.++.++.
T Consensus 319 ------------~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 319 ------------EGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred ------------CCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 445567899999999999998887774 33332 3457899999999999776555665655
Q ss_pred CCC
Q 005858 467 EHT 469 (673)
Q Consensus 467 ~~T 469 (673)
...
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 443
No 57
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.83 E-value=1.6e-18 Score=199.08 Aligned_cols=367 Identities=13% Similarity=0.085 Sum_probs=199.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcC------CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLL------GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEM 105 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~------~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~ 105 (673)
++.-+++||..||+.+...... .++|++.+.+|+|||++++.++..+.... ...++|||||. .|..||.++|
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHH
Confidence 3566899999999999887654 35799999999999999999998876433 34468999996 6889999999
Q ss_pred HHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc-cccccCC----CccEEEEcCCc
Q 005858 106 AKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-QGFLSQI----PWCYTIIDEAQ 180 (673)
Q Consensus 106 ~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-~~~l~~~----~~~~vIvDEaH 180 (673)
..+.+.... -.++ ...+...+ ......++|+|.+.|... ...+... ...+||+||||
T Consensus 314 ~~~~~~~~~--~~~s---~~~L~~~l-------------~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH 375 (667)
T TIGR00348 314 QSLQKDCAE--RIES---IAELKRLL-------------EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH 375 (667)
T ss_pred HhhCCCCCc--ccCC---HHHHHHHH-------------hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc
Confidence 998853211 1111 12222111 112357999999999752 1111111 22389999999
Q ss_pred cccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCC--Ch-HHHHHHhhhhccCCCcchhhhHHHH
Q 005858 181 RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFG--TL-NQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 181 ~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~--~~-~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
+... ......+...++...+++|||||+...-.+-+..+.....+.+. ++ +.-.+-+..++........... .
T Consensus 376 rs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~--~ 451 (667)
T TIGR00348 376 RSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHL--D 451 (667)
T ss_pred cccc--hHHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhcc--C
Confidence 9532 33455665567788999999999864211111111100000000 00 0011111111100000000000 0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHH-HHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLV-VLDL 336 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~-~l~~ 336 (673)
-..+...+...+.. .|.. +...+....+ +........... ...+. ....
T Consensus 452 ~~~l~~~~~~~~~~-------------~~~~--~~~~~~~~l~----~~~~~~~~~~~~-----------~~~~~~ia~~ 501 (667)
T TIGR00348 452 RKKLDAFFDEIFEL-------------LPER--IREITKESLK----EKLQKTKKILFN-----------EDRLESIAKD 501 (667)
T ss_pred hHHHHHHHHHHHHh-------------hhcc--ccHHHHHHHH----HHHHHHHhhhcC-----------hHHHHHHHHH
Confidence 01112212111110 1110 0111111000 000000000000 00000 1112
Q ss_pred HHHHH----HhCCCeEEEEecCchHHHHHHHHHHhC-----CCcEEEEeCCcCHH---------------------HHHH
Q 005858 337 LLKKL----YNSGHRVLLFAQMTQTLDILQDFLELR-----KYSYERLDGSIRAE---------------------ERFA 386 (673)
Q Consensus 337 ll~~~----~~~g~kvlIFsq~~~~ld~l~~~L~~~-----g~~~~~i~G~~~~~---------------------~R~~ 386 (673)
++..+ ...+.|.+|||.....+..+.+.|... +...+.++|+.+.+ ....
T Consensus 502 i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (667)
T TIGR00348 502 IAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYK 581 (667)
T ss_pred HHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHH
Confidence 22222 223579999999988887777776443 34556667665433 1235
Q ss_pred HHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc-CC-cCeEEEEEE
Q 005858 387 AIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI-GQ-MNHVLSINL 464 (673)
Q Consensus 387 ~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-GQ-~k~V~Vy~l 464 (673)
++++|+. ++..-+|++++...+|+|.+.++++++.-|--+. .+.|++||+.|+ +- +....|+.|
T Consensus 582 ~~~~Fk~-------------~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy 647 (667)
T TIGR00348 582 DLERFKK-------------EENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDY 647 (667)
T ss_pred HHHHhcC-------------CCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEEC
Confidence 6777762 2334566777999999999999999988876654 578999999995 43 345677777
Q ss_pred ec
Q 005858 465 VT 466 (673)
Q Consensus 465 v~ 466 (673)
+.
T Consensus 648 ~g 649 (667)
T TIGR00348 648 RG 649 (667)
T ss_pred cC
Confidence 54
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=8.1e-19 Score=199.77 Aligned_cols=322 Identities=19% Similarity=0.216 Sum_probs=189.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCC-CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--
Q 005858 35 AELKPHQVEGLSWLIRRYLLGV-NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~-~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-- 110 (673)
++++|||.+++..++. |. ..++..++|+|||..+.+++..+..........+++||. .++.|-.+++.++..
T Consensus 14 ~~PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 14 YSPFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCCCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4489999999986553 44 466778999999986544443332222223333446697 677888888877763
Q ss_pred -----------------------CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--
Q 005858 111 -----------------------KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-- 165 (673)
Q Consensus 111 -----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-- 165 (673)
.+++..+.|.......... ....++|||.|.+++.+..-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~---------------l~~~p~IIVgT~D~i~sr~L~~g 154 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWML---------------DPHRPAVIVGTVDMIGSRLLFSG 154 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHh---------------cCCCCcEEEECHHHHcCCccccc
Confidence 2556666666544333322 234578999999888653211
Q ss_pred ----cc--------CCCccEEEEcCCccccCcccHHHHHHHhh-cCC----CcEEEEecCCCCCCHHHHHHHHHHhC-CC
Q 005858 166 ----LS--------QIPWCYTIIDEAQRLKNPSSVLYNVLREH-FLM----PRRLLMTGTPIQNNLSELWALMHFCM-PS 227 (673)
Q Consensus 166 ----l~--------~~~~~~vIvDEaH~~KN~~s~~~~~l~~~-~~~----~~rllLTGTPi~N~~~El~~ll~~l~-p~ 227 (673)
+. -.+..++|+||||........+.+.+... ... .+.+++|||+-. ...+ +...+. .+
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~-ei~~---l~~~~~~~p 230 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT-DGPD---RTTLLSAED 230 (844)
T ss_pred cccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc-cHHH---HHHHHccCC
Confidence 00 12367999999993333333333444321 011 357999999732 1111 111110 00
Q ss_pred CCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhH
Q 005858 228 VFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKEL 307 (673)
Q Consensus 228 ~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~ 307 (673)
.. ....+..+ ..+....+.
T Consensus 231 ~~----------------------------------------i~V~~~~l------~a~ki~q~v--------------- 249 (844)
T TIGR02621 231 YK----------------------------------------HPVLKKRL------AAKKIVKLV--------------- 249 (844)
T ss_pred ce----------------------------------------eecccccc------cccceEEEE---------------
Confidence 00 00000000 000000000
Q ss_pred HHHHhhccccccccccccccCCcHHH-HHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHH-
Q 005858 308 PKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERF- 385 (673)
Q Consensus 308 ~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~- 385 (673)
......|+.. +..+...+...+.++||||+....++.+.+.|...++ ..++|.+++.+|.
T Consensus 250 ----------------~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 250 ----------------PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDD 311 (844)
T ss_pred ----------------ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhh
Confidence 0000011111 1122222335678999999999999999999998887 8999999999999
Q ss_pred ----HHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcC--eE
Q 005858 386 ----AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMN--HV 459 (673)
Q Consensus 386 ----~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k--~V 459 (673)
.++++|.+...... . ....+...+|++|++++.|||+.. ++||++..|+ ..+.||+||++|.|... .+
T Consensus 312 ~~~~~il~~Fk~~~~~g~-~--~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i 385 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGS-R--ARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQI 385 (844)
T ss_pred HHHHHHHHHHhccccccc-c--ccccccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceE
Confidence 77899974100000 0 000112467899999999999986 9999877764 78999999999999854 35
Q ss_pred EEEEE
Q 005858 460 LSINL 464 (673)
Q Consensus 460 ~Vy~l 464 (673)
.++.+
T Consensus 386 ~vv~~ 390 (844)
T TIGR02621 386 AVVHL 390 (844)
T ss_pred EEEee
Confidence 55544
No 59
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=9.6e-20 Score=176.53 Aligned_cols=312 Identities=19% Similarity=0.260 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHH-HHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CCeEE
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQ-AISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KLEVL 115 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~-ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~~v~ 115 (673)
-|..|+..++ .|+.+|.....|+|||.+ +|+++..+.... ..-.+||+.|. .+..|..+-+..... +..+.
T Consensus 53 IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 53 IQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 5666655444 468999999999999986 455554443222 22348999998 455777777766654 45566
Q ss_pred EEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCc--ccHHHH
Q 005858 116 RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNP--SSVLYN 191 (673)
Q Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~--~s~~~~ 191 (673)
.+.|.+.-.+.++... .+.+++.-|+..+..- ...+......++|+|||..+.|. ..+.+.
T Consensus 128 acigg~n~gedikkld---------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd 192 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLD---------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYD 192 (400)
T ss_pred EEecCCccchhhhhhc---------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHH
Confidence 6667666555554422 3457888898877443 34566677899999999998764 456777
Q ss_pred HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhh
Q 005858 192 VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLR 271 (673)
Q Consensus 192 ~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lr 271 (673)
..+-.-+....+++|||- +.|+..+.++..++...
T Consensus 193 iyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpvr----------------------------------------- 227 (400)
T KOG0328|consen 193 IYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPVR----------------------------------------- 227 (400)
T ss_pred HHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCcee-----------------------------------------
Confidence 777533467789999995 24444444443332210
Q ss_pred hhhhhhhhcCCccCCCcccccHH-HHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEE
Q 005858 272 RTKQKLVECGHLMLPPLTEITVL-QKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLL 350 (673)
Q Consensus 272 r~k~~v~~~~~~~lp~~~e~~~~-Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlI 350 (673)
.+....|++.. -+++|-..-. ..-|...|..+...+ .=...+|
T Consensus 228 ------------ilvkrdeltlEgIKqf~v~ve~----------------------EewKfdtLcdLYd~L--tItQavI 271 (400)
T KOG0328|consen 228 ------------ILVKRDELTLEGIKQFFVAVEK----------------------EEWKFDTLCDLYDTL--TITQAVI 271 (400)
T ss_pred ------------EEEecCCCchhhhhhheeeech----------------------hhhhHhHHHHHhhhh--ehheEEE
Confidence 01111222221 1111111000 112444566666554 2347899
Q ss_pred EecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCe
Q 005858 351 FAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADT 430 (673)
Q Consensus 351 Fsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~ 430 (673)
||+.....|.|.+.++..++.+..++|.+++++|.+++.+|+ ++...+|++|++-+.|+++|..+.
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR--------------sg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR--------------SGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh--------------cCCceEEEEechhhccCCcceeEE
Confidence 999999999999999999999999999999999999999998 566678999999999999999999
Q ss_pred eEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 431 VIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 431 VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
||+||+|-|+..|.+|+||.+|+|.+- .+++|+...
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~ 373 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSD 373 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcc--eEEEEecHH
Confidence 999999999999999999999999753 344566553
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=1.1e-18 Score=196.82 Aligned_cols=366 Identities=19% Similarity=0.165 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+.+..+.- +.|.|....||.|||++++..+..... ..+.++||+|+. +..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 356666666544433 256899999999999998876533322 234589999984 66888887766542 45
Q ss_pred eEEEEeCC-hH--HHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---------ccccCCCccEEEEcCCc
Q 005858 113 EVLRYVGE-RE--QRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---------GFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 113 ~v~~~~g~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---------~~l~~~~~~~vIvDEaH 180 (673)
.+....+. .. .....+.. ...++|+++|++.+..+. ..+...++.++|+||||
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~---------------~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaD 205 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRK---------------IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVD 205 (762)
T ss_pred cEEEEECCCCccccCHHHHHH---------------hCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHh
Confidence 55544332 11 11111111 124799999999985331 11223467899999999
Q ss_pred cccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHH----hCCCC-CC-----------C-hHHHHHHhhhhc
Q 005858 181 RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHF----CMPSV-FG-----------T-LNQFLSTFKDAV 243 (673)
Q Consensus 181 ~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~----l~p~~-~~-----------~-~~~f~~~f~~~~ 243 (673)
.+-- -.++..+++||.|-.. ..+|...+- |.++. |. + -....+.|-...
T Consensus 206 sILi------------Deartpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~ 271 (762)
T TIGR03714 206 SVLL------------DSAQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID 271 (762)
T ss_pred hHhh------------ccCcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC
Confidence 8532 1234458899977533 456666543 23321 10 0 011112221110
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHH-HHhhhhhhhhhhcCCcc---------CCCcc---------------cccH-----
Q 005858 244 HSSSAPKRGKIKEQFTSLKGILSA-FMLRRTKQKLVECGHLM---------LPPLT---------------EITV----- 293 (673)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~~l~~-~~lrr~k~~v~~~~~~~---------lp~~~---------------e~~~----- 293 (673)
.-+... .......+...++. +++.|.+..+...+.+. +|... ++++
T Consensus 272 ~l~~~~----~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~ 347 (762)
T TIGR03714 272 NLYSEE----YFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAM 347 (762)
T ss_pred ccCChh----hHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceee
Confidence 001010 01122233333333 34555555444322111 11100 0000
Q ss_pred ----HHH--HHHHHHH---------hhhHHHHHhh--cccccccccc--------ccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 294 ----LQK--KVYASIL---------RKELPKLLAL--SSRTANHQSL--------QNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 294 ----~Q~--~~y~~~l---------~~~~~~l~~~--~~~~~~~~~l--------~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
.|. ..|..+. ..++..+... ...+.+.|.. ......|..++...+..+...+..|
T Consensus 348 a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 348 ASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred eeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCE
Confidence 111 1111110 0011111110 0001111111 1114568888888888888889999
Q ss_pred EEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC--
Q 005858 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV-- 426 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~-- 426 (673)
||||......+.+...|...|+++..++|.....+|..+...|+ .+ -++++|+.+|.|+|+.
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~--------------~g--~VlIATdmAgRGtDI~l~ 491 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ--------------KG--AVTVATSMAGRGTDIKLG 491 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC--------------CC--eEEEEccccccccCCCCC
Confidence 99999999999999999999999999999999888766666554 22 5789999999999999
Q ss_pred -------CCCeeEeeCCCCCcchHHHHhHhhhccCCcCe
Q 005858 427 -------AADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 427 -------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
+.++|+.+++|-+... .|+.||++|.|..=.
T Consensus 492 ~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 492 KGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred ccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 7899999999977655 999999999997644
No 61
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=1.6e-18 Score=189.05 Aligned_cols=309 Identities=18% Similarity=0.203 Sum_probs=209.9
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAK 107 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k 107 (673)
..++++|...|+.++.-+.....+.. +-+|..++|+|||++|+..+......+ .-+..++|+.++ .|-.+.+.+
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHH
Confidence 45678899999999998887765543 558888999999999876665554333 346888999877 888999999
Q ss_pred HCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc
Q 005858 108 FTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 108 ~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
|++ ++.+....|+-.... ++.....+ ..+..+++|-||..+.....+ .+..+||+||-||+.
T Consensus 334 ~l~~~~i~V~lLtG~~kgk~--r~~~l~~l---------~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFG-- 397 (677)
T COG1200 334 WLEPLGIRVALLTGSLKGKA--RKEILEQL---------ASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFG-- 397 (677)
T ss_pred HhhhcCCeEEEeecccchhH--HHHHHHHH---------hCCCCCEEEEcchhhhcceee---cceeEEEEecccccc--
Confidence 997 456666666543322 22233332 344579999999988654443 355799999999974
Q ss_pred ccHHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 186 SSVLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 186 ~s~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
......++..-. .++.+.||||||+.++.= ..|++...
T Consensus 398 -V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--------------------t~fgDldv-------------------- 436 (677)
T COG1200 398 -VHQRLALREKGEQNPHVLVMTATPIPRTLAL--------------------TAFGDLDV-------------------- 436 (677)
T ss_pred -HHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--------------------HHhccccc--------------------
Confidence 333444554445 589999999999877650 11111100
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCc-ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPL-TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN 343 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~-~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~ 343 (673)
+..-.+|+- .++.. .-+...+...+.+.+..-..
T Consensus 437 ---------------S~IdElP~GRkpI~T------------------------------~~i~~~~~~~v~e~i~~ei~ 471 (677)
T COG1200 437 ---------------SIIDELPPGRKPITT------------------------------VVIPHERRPEVYERIREEIA 471 (677)
T ss_pred ---------------hhhccCCCCCCceEE------------------------------EEeccccHHHHHHHHHHHHH
Confidence 001125542 22100 00011122223333444446
Q ss_pred CCCeEEEEecCchHH--------HHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEE
Q 005858 344 SGHRVLLFAQMTQTL--------DILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFM 413 (673)
Q Consensus 344 ~g~kvlIFsq~~~~l--------d~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL 413 (673)
.|+++.+.|...... ..+...|... ++.+..+||.++.+++++++.+|+ .+..-+|
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk--------------~~e~~IL 537 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK--------------EGEIDIL 537 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH--------------cCCCcEE
Confidence 899999999765433 2333444422 667899999999999999999999 4445678
Q ss_pred EeccccccccCCCCCCeeEeeCCC-CCcchHHHHhHhhhccCCcCe
Q 005858 414 ISTRAGGVGLNLVAADTVIFYEQD-WNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 414 ~st~agg~GiNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
+||.+..+|||+++|+.+|+.++. +--+.+-|--||++|=+....
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 888899999999999999999987 788999999999999665443
No 62
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3.6e-18 Score=176.47 Aligned_cols=314 Identities=20% Similarity=0.274 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCC--CEEEEECcc-cHHH---HHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPG--PFLVLCPLS-VTDG---WVSEMA 106 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~--~~LIV~P~s-ll~~---W~~E~~ 106 (673)
...|-|..++..++.+ ..+++-..+|+|||+.-+.-+......+ ..++ ..|||+|+- +..| -...|.
T Consensus 28 ~mTpVQa~tIPlll~~----KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKN----KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHhcC----CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 5678999999877764 8899999999999998877666554222 1122 369999973 3344 444555
Q ss_pred HHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh----ccccccCCCccEEEEcCCccc
Q 005858 107 KFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM----DQGFLSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 107 k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~----~~~~l~~~~~~~vIvDEaH~~ 182 (673)
.+.|+++...+.|...-...+..... ..++|+|.|++.+.. ....+......++|+|||.++
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~fke--------------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrL 169 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTFKE--------------EGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRL 169 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHHHH--------------hCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhH
Confidence 56689999999998666555443221 236899999987643 334455556789999999999
Q ss_pred cCccc--HHHHHHHhhcCCCcEE-EEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHH
Q 005858 183 KNPSS--VLYNVLREHFLMPRRL-LMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259 (673)
Q Consensus 183 KN~~s--~~~~~l~~~~~~~~rl-lLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 259 (673)
-.-.. .+...+. .++..+|- ++|||-.+ +.-.|.
T Consensus 170 ldmgFe~~~n~ILs-~LPKQRRTGLFSATq~~----~v~dL~-------------------------------------- 206 (567)
T KOG0345|consen 170 LDMGFEASVNTILS-FLPKQRRTGLFSATQTQ----EVEDLA-------------------------------------- 206 (567)
T ss_pred hcccHHHHHHHHHH-hcccccccccccchhhH----HHHHHH--------------------------------------
Confidence 76443 3445554 36665554 56888321 000010
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHH
Q 005858 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLK 339 (673)
Q Consensus 260 ~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~ 339 (673)
..-+|.... +++.++.. .. .........+.....-|+..+..+|.
T Consensus 207 -------raGLRNpv~---------------V~V~~k~~------~~-------tPS~L~~~Y~v~~a~eK~~~lv~~L~ 251 (567)
T KOG0345|consen 207 -------RAGLRNPVR---------------VSVKEKSK------SA-------TPSSLALEYLVCEADEKLSQLVHLLN 251 (567)
T ss_pred -------HhhccCcee---------------eeeccccc------cc-------CchhhcceeeEecHHHHHHHHHHHHh
Confidence 111111110 00000000 00 00000001111223456667777776
Q ss_pred HHHhCCCeEEEEecCchHHHHHHHHHHh--CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc
Q 005858 340 KLYNSGHRVLLFAQMTQTLDILQDFLEL--RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR 417 (673)
Q Consensus 340 ~~~~~g~kvlIFsq~~~~ld~l~~~L~~--~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ 417 (673)
. ...+|+|||-..-...+.....+.. ...+++-+||.++...|...+..|.. ...-+|++|+
T Consensus 252 ~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~--------------~~~~vl~~TD 315 (567)
T KOG0345|consen 252 N--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK--------------LSNGVLFCTD 315 (567)
T ss_pred c--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh--------------ccCceEEeeh
Confidence 6 5678999998777777776666653 47889999999999999999999983 3345789999
Q ss_pred ccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 418 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 418 agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
+++.|||+++.|.||.||||-+|..+.+|.||..|.|..-.-.|
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 99999999999999999999999999999999999997544333
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.4e-18 Score=180.58 Aligned_cols=372 Identities=19% Similarity=0.246 Sum_probs=219.6
Q ss_pred CCCcHHHHHHHHHHHHHhcC-----CCCeEEECCCcchHHHHHH-HHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLL-----GVNVLLGDEMGLGKTLQAI-SFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~-----~~~~iLade~GlGKTl~ai-~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
..++|-|...+.|++..... ++...+..++|+|||+.-. -++..+......+-+.+||+|. .++.|-.++|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 56899999999999876552 3456788999999999744 3444443333344568999997 566999999999
Q ss_pred HCCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCccc
Q 005858 108 FTPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQRL 182 (673)
Q Consensus 108 ~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~~ 182 (673)
|++. +.|....|...-+...++... ..+.+..||+|+|++.+..+... |.--...++|||||.|+
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~----------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRl 307 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLAS----------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRL 307 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhc----------CCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHH
Confidence 9975 455556666555444433211 12344679999999999876543 33335679999999999
Q ss_pred cCcccHHHH-HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHH
Q 005858 183 KNPSSVLYN-VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 183 KN~~s~~~~-~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L 261 (673)
.+...+-+- .+....+...++.+.+ .+..+..-..|-.++. ....+.. -...|
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e---~~t~~~~---------------~~~~l 361 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSE---LLTKLGK---------------LYPPL 361 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChh--------hhhhhcccCCchhhHH---HHhhcCC---------------cCchh
Confidence 775544332 1111122222221111 1111110000100000 0000000 00111
Q ss_pred HHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccc---cccC--CcHHHHHH
Q 005858 262 KGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQ---NTAS--GKLVVLDL 336 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~---~~~s--~Kl~~l~~ 336 (673)
.++..+-.+.++-..+.+ -.+..|.....+-. ......-...+. ...+ -|-..+..
T Consensus 362 ~kL~~satLsqdP~Kl~~-l~l~~Prl~~v~~~------------------~~~ryslp~~l~~~~vv~~~~~kpl~~~~ 422 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKD-LTLHIPRLFHVSKP------------------LIGRYSLPSSLSHRLVVTEPKFKPLAVYA 422 (620)
T ss_pred HhhhcchhhhcChHHHhh-hhcCCCceEEeecc------------------cceeeecChhhhhceeecccccchHhHHH
Confidence 222222222222222111 01122221111000 000000000000 0112 23334555
Q ss_pred HHHHHHhCCCeEEEEecCchHHHHHHHHHH----hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEE
Q 005858 337 LLKKLYNSGHRVLLFAQMTQTLDILQDFLE----LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVF 412 (673)
Q Consensus 337 ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vl 412 (673)
++.. ....++|+|+........+...|. ..+.++-.+.|..+.+.|.+.+++|+ .+...+
T Consensus 423 lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~--------------~g~i~v 486 (620)
T KOG0350|consen 423 LITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA--------------KGDINV 486 (620)
T ss_pred HHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh--------------cCCceE
Confidence 5554 567899999999988777777765 33566777999999999999999998 445566
Q ss_pred EEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHH
Q 005858 413 MISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481 (673)
Q Consensus 413 L~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K 481 (673)
|+++++++.|||+...+.||.||+|-.-..|.+|.||..|.||.- +.|.++... |++.|-.+..|
T Consensus 487 LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 487 LICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred EEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHHHHH
Confidence 889999999999999999999999999999999999999999964 344555443 45555555444
No 64
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=8.8e-18 Score=174.80 Aligned_cols=302 Identities=19% Similarity=0.253 Sum_probs=198.7
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCC---CCCCEEEEECccc----HHHHHHHHHHHCCCCeEEEEeCChHHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQM---SPGPFLVLCPLSV----TDGWVSEMAKFTPKLEVLRYVGEREQRRNIR 128 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~---~~~~~LIV~P~sl----l~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~ 128 (673)
...+-|..+|+|||..-+.-+.......+ ..-++||+||.-- +.+..+.+.+|+ ++.+....|.-+-+.+-.
T Consensus 219 kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~ 297 (691)
T KOG0338|consen 219 KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEA 297 (691)
T ss_pred chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHH
Confidence 34455678999999875444433322222 2335899999732 366677788888 588888888766544322
Q ss_pred HHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCccccCcc--cHHHHHHHhhcCCCcEE
Q 005858 129 RTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQRLKNPS--SVLYNVLREHFLMPRRL 203 (673)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~~KN~~--s~~~~~l~~~~~~~~rl 203 (673)
. -...+||||.|++.|..+... |.--...++|+|||.|+.... .++...+..+-+.+..+
T Consensus 298 ~---------------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTm 362 (691)
T KOG0338|consen 298 V---------------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTM 362 (691)
T ss_pred H---------------HhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccce
Confidence 1 123589999999999765433 333456789999999987533 34555555433445569
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 005858 204 LMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHL 283 (673)
Q Consensus 204 lLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~ 283 (673)
++|||. .....||.++- +-.| + .+
T Consensus 363 LFSATM-teeVkdL~slS-L~kP----------------v--------------------------------------ri 386 (691)
T KOG0338|consen 363 LFSATM-TEEVKDLASLS-LNKP----------------V--------------------------------------RI 386 (691)
T ss_pred eehhhh-HHHHHHHHHhh-cCCC----------------e--------------------------------------EE
Confidence 999993 22222222210 0000 0 00
Q ss_pred cCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH
Q 005858 284 MLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQD 363 (673)
Q Consensus 284 ~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~ 363 (673)
.+.+.....+.-++.|-.+.. .+ ..-+-.+|..++..+. ..+++||.+....++.+.-
T Consensus 387 fvd~~~~~a~~LtQEFiRIR~----------~r----------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~I 444 (691)
T KOG0338|consen 387 FVDPNKDTAPKLTQEFIRIRP----------KR----------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRI 444 (691)
T ss_pred EeCCccccchhhhHHHheecc----------cc----------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHH
Confidence 111111111111111110000 00 1112335666666654 5689999999999999988
Q ss_pred HHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchH
Q 005858 364 FLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVD 443 (673)
Q Consensus 364 ~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~ 443 (673)
.|-..|+++..++|+.++++|...++.|+ ....-+|++|+.++.||++.+..+||+|++|-+...|
T Consensus 445 llGLlgl~agElHGsLtQ~QRlesL~kFk--------------~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y 510 (691)
T KOG0338|consen 445 LLGLLGLKAGELHGSLTQEQRLESLEKFK--------------KEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHY 510 (691)
T ss_pred HHHHhhchhhhhcccccHHHHHHHHHHHH--------------hccCCEEEEechhhccCCccceeEEEeccCchhHHHH
Confidence 88888999999999999999999999998 4444678999999999999999999999999999999
Q ss_pred HHHhHhhhccCCc-CeEEEEEEecCC
Q 005858 444 KQALQRAHRIGQM-NHVLSINLVTEH 468 (673)
Q Consensus 444 ~Qa~gR~~RiGQ~-k~V~Vy~lv~~~ 468 (673)
.+|+||..|.|-. +.| .|+.++
T Consensus 511 ~HRVGRTARAGRaGrsV---tlvgE~ 533 (691)
T KOG0338|consen 511 LHRVGRTARAGRAGRSV---TLVGES 533 (691)
T ss_pred HHHhhhhhhcccCcceE---EEeccc
Confidence 9999999999853 344 456655
No 65
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.81 E-value=1.1e-18 Score=182.19 Aligned_cols=330 Identities=18% Similarity=0.270 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHH----HHHHHHhhh----cCCCCCC-EEEEECcc-cHHHHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA----ISFLSYLKF----SQMSPGP-FLVLCPLS-VTDGWVSEM 105 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~a----i~~i~~l~~----~~~~~~~-~LIV~P~s-ll~~W~~E~ 105 (673)
.+-|-|+.++--++. ++..|...|+|+|||..- +..|..+.. .+..-+| .+|++|+- +..|...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 456788888764444 488999999999999542 223332220 1112233 68999984 557888888
Q ss_pred HHHC--CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCcc
Q 005858 106 AKFT--PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQR 181 (673)
Q Consensus 106 ~k~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~ 181 (673)
.+|. -..+++...|.....++- |+ ....++++|.|+..+.... ..|-.....+||+|||.+
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~----fq-----------ls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadr 407 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQG----FQ-----------LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADR 407 (673)
T ss_pred HHhcccccceEEEEecccchhhhh----hh-----------hhccceeeecCchHHHHHHHHHHHHhccCceEeccchhh
Confidence 8886 245666666654332210 00 1235799999999885542 334455678999999999
Q ss_pred ccCcc--cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHH
Q 005858 182 LKNPS--SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259 (673)
Q Consensus 182 ~KN~~--s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 259 (673)
+-... -...+.+.. + |..|--.+ .+....+......|....
T Consensus 408 miDmgfE~dv~~iL~~-m-----------Pssn~k~~---------tde~~~~~~~~~~~~~~k---------------- 450 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQ-M-----------PSSNAKPD---------TDEKEGEERVRKNFSSSK---------------- 450 (673)
T ss_pred hhcccccHHHHHHHHh-C-----------CccccCCC---------ccchhhHHHHHhhccccc----------------
Confidence 85422 223333322 1 22111000 000000000000110000
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccc-----ccccCCcHHHH
Q 005858 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSL-----QNTASGKLVVL 334 (673)
Q Consensus 260 ~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l-----~~~~s~Kl~~l 334 (673)
..|..-.. ...+||- -..+-++++.+-. +.........++.+ ....+.|...|
T Consensus 451 ----------~yrqT~mf----tatm~p~------verlar~ylr~pv--~vtig~~gk~~~rveQ~v~m~~ed~k~kkL 508 (673)
T KOG0333|consen 451 ----------KYRQTVMF----TATMPPA------VERLARSYLRRPV--VVTIGSAGKPTPRVEQKVEMVSEDEKRKKL 508 (673)
T ss_pred ----------ceeEEEEE----ecCCChH------HHHHHHHHhhCCe--EEEeccCCCCccchheEEEEecchHHHHHH
Confidence 00000000 0011111 1111111111100 00000001111111 11246677788
Q ss_pred HHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 335 DLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
.++|... ....+|||.+....+|.|.+.|...||+++.+||+.++++|..++..|+ .+..-+|+
T Consensus 509 ~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr--------------~~t~dIlV 572 (673)
T KOG0333|consen 509 IEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR--------------EGTGDILV 572 (673)
T ss_pred HHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH--------------hcCCCEEE
Confidence 8888874 4679999999999999999999999999999999999999999999999 43445788
Q ss_pred eccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeE
Q 005858 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHV 459 (673)
Q Consensus 415 st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 459 (673)
+|+++|.||++++.++||.||..-+-..|.+||||.+|.|+.=.+
T Consensus 573 aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta 617 (673)
T KOG0333|consen 573 ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA 617 (673)
T ss_pred EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee
Confidence 999999999999999999999999999999999999999986443
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.80 E-value=6e-18 Score=191.72 Aligned_cols=335 Identities=20% Similarity=0.172 Sum_probs=214.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcC-CCC---CCEEEEECcc-cHHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQ-MSP---GPFLVLCPLS-VTDGWVSEMAKF 108 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~-~~~---~~~LIV~P~s-ll~~W~~E~~k~ 108 (673)
.+|.|+|+.++..+. .|.++++..+||+|||..|+..+ ..+...+ +.. -.+|-|.|.- +-....+-+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 568999999986554 48999999999999999987554 4443332 111 2379999974 434444555444
Q ss_pred C--CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc------cccccCCCccEEEEcCCc
Q 005858 109 T--PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD------QGFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 109 ~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~------~~~l~~~~~~~vIvDEaH 180 (673)
. -++.+-+-+|+....+..+. ...++||+|||++++.-. ...|. +..+|||||.|
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~---------------~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiH 159 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKM---------------LKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIH 159 (814)
T ss_pred HHHcCCccceecCCCChHHhhhc---------------cCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhh
Confidence 3 35667777887654433222 456799999999998543 22233 35789999999
Q ss_pred cccCcc--cHHHHHH---HhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHH
Q 005858 181 RLKNPS--SVLYNVL---REHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIK 255 (673)
Q Consensus 181 ~~KN~~--s~~~~~l---~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 255 (673)
.+.+.. ++++-.+ ........|++||||= .++. ..-.||.+.... +..+. ..
T Consensus 160 el~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~---~varfL~g~~~~---------~~Iv~-~~-------- 216 (814)
T COG1201 160 ALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPE---EVAKFLVGFGDP---------CEIVD-VS-------- 216 (814)
T ss_pred hhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHH---HHHHHhcCCCCc---------eEEEE-cc--------
Confidence 998633 3444333 3222246789999993 2333 333444332100 00000 00
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHH
Q 005858 256 EQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLD 335 (673)
Q Consensus 256 ~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~ 335 (673)
.-++..-.+ ..|. ..+. .. ..-...+.
T Consensus 217 -------------~~k~~~i~v------~~p~-~~~~-----~~----------------------------~~~~~~~~ 243 (814)
T COG1201 217 -------------AAKKLEIKV------ISPV-EDLI-----YD----------------------------EELWAALY 243 (814)
T ss_pred -------------cCCcceEEE------EecC-Cccc-----cc----------------------------cchhHHHH
Confidence 000000000 0010 0000 00 00011233
Q ss_pred HHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCC-CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 336 LLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRK-YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 336 ~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g-~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
..+..+..+...+|||++.+.+.+.+...|...+ .++...||+.+.+.|..+-++|+ .++ .-.++
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk-------------~G~-lravV 309 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLK-------------EGE-LKAVV 309 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHh-------------cCC-ceEEE
Confidence 4444555566699999999999999999998886 88999999999999999999999 344 56678
Q ss_pred eccccccccCCCCCCeeEeeCCCCCcchHHHHhHhh-hccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHH
Q 005858 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRA-HRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRL 484 (673)
Q Consensus 415 st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~-~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l 484 (673)
||.....|||.-..|.||+|.+|-......||+||+ ||+|....- ++++.+ .++.+-.....+..+
T Consensus 310 ~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~dllE~~vi~~~a~ 376 (814)
T COG1201 310 ATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RDDLLECLVLADLAL 376 (814)
T ss_pred EccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999 677764332 233344 566665555555444
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=3.9e-18 Score=186.67 Aligned_cols=307 Identities=21% Similarity=0.237 Sum_probs=212.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
-..||-|.+++..+++. .++|...+||.||++..-..+ +. ..|.+|||.|. +++..-.+.+....-.+.
T Consensus 16 ~~FR~gQ~evI~~~l~g----~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDALLSG----KDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAGIRAA 85 (590)
T ss_pred cccCCCHHHHHHHHHcC----CcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcCceee
Confidence 45789999999877774 899999999999999643322 22 25789999996 888888888877663322
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCcc-----
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPS----- 186 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~----- 186 (673)
.+.-.-+.+++..+...+ .....+++..++|.+... ...+......+++|||||.+-...
T Consensus 86 ~lnS~l~~~e~~~v~~~l-------------~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 86 YLNSTLSREERQQVLNQL-------------KSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred hhhcccCHHHHHHHHHHH-------------hcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 222222333333332222 233578999999999765 355668889999999999886532
Q ss_pred --cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 187 --SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 187 --s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
..+.. +...++..-+++||||--..--.|+-..|..-.|..|.. .|
T Consensus 153 ~Y~~lg~-l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sf------------------------- 200 (590)
T COG0514 153 DYRRLGR-LRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SF------------------------- 200 (590)
T ss_pred hHHHHHH-HHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cC-------------------------
Confidence 22223 333466677899999965555555555554333322110 01
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHH-HHHh
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLK-KLYN 343 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~-~~~~ 343 (673)
+.|- +|-.+.. ..+++.... .+. ....
T Consensus 201 -------------------dRpN----------i~~~v~~---------------------~~~~~~q~~--fi~~~~~~ 228 (590)
T COG0514 201 -------------------DRPN----------LALKVVE---------------------KGEPSDQLA--FLATVLPQ 228 (590)
T ss_pred -------------------CCch----------hhhhhhh---------------------cccHHHHHH--HHHhhccc
Confidence 0110 0000000 000111111 111 1223
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+...||||..+...+.+..+|...|+....++|+++.++|....++|. .+...++++|.|.|-||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~--------------~~~~~iiVAT~AFGMGI 294 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL--------------NDEIKVMVATNAFGMGI 294 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh--------------cCCCcEEEEeccccCcc
Confidence 4556899999999999999999999999999999999999999999999 44556788999999999
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
|=++...|||||+|-+...|-|-+|||+|-|....+..+
T Consensus 295 dKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 295 DKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 999999999999999999999999999999987765443
No 68
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=3.2e-18 Score=188.90 Aligned_cols=360 Identities=15% Similarity=0.155 Sum_probs=220.4
Q ss_pred cccCcCCcCCCcHHHHHHHHHHHHHhcCCC-CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC-cccHHHHHHH
Q 005858 27 DAAEFGVTAELKPHQVEGLSWLIRRYLLGV-NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP-LSVTDGWVSE 104 (673)
Q Consensus 27 ~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~-~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P-~sll~~W~~E 104 (673)
...|..-...+|+||..|++.+.+.+.+|. .++|++.+|+|||.+|++++..|...+.. +++|.++- ++++.|-..+
T Consensus 156 ~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 156 AYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-KRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-heeeEEechHHHHHHHHHH
Confidence 333444568899999999999999888765 59999999999999999999999777654 45899998 5788999999
Q ss_pred HHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc-------ccccCCCccEEEEc
Q 005858 105 MAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ-------GFLSQIPWCYTIID 177 (673)
Q Consensus 105 ~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~-------~~l~~~~~~~vIvD 177 (673)
|..+.|+...+....... ....+++.++||.++.... ..+..-.||+||+|
T Consensus 235 f~~~~P~~~~~n~i~~~~----------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvID 292 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKK----------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVID 292 (875)
T ss_pred HHHhCCCccceeeeeccc----------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEec
Confidence 999999877765543321 1224789999999996542 23444469999999
Q ss_pred CCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 178 EAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 178 EaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
||||- ....++.+.. +....+++|||||-..--..-|. -|. +.++..++-...
T Consensus 293 EaHRg---i~~~~~~I~d-YFdA~~~gLTATP~~~~d~~T~~--------------~F~---g~Pt~~YsleeA------ 345 (875)
T COG4096 293 EAHRG---IYSEWSSILD-YFDAATQGLTATPKETIDRSTYG--------------FFN---GEPTYAYSLEEA------ 345 (875)
T ss_pred hhhhh---HHhhhHHHHH-HHHHHHHhhccCccccccccccc--------------ccC---CCcceeecHHHH------
Confidence 99992 2223334444 44556778899995411111111 110 222221110000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccc--ccccCCcHHHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSL--QNTASGKLVVLD 335 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l--~~~~s~Kl~~l~ 335 (673)
+. ...+-|+-.-+..-++... . .-|.. .+ .+.+.+...+.. .........+ .+........+.
T Consensus 346 V~--DGfLvpy~vi~i~~~~~~~-G-~~~~~--~s-erek~~g~~i~~--------dd~~~~~~d~dr~~v~~~~~~~V~ 410 (875)
T COG4096 346 VE--DGFLVPYKVIRIDTDFDLD-G-WKPDA--GS-EREKLQGEAIDE--------DDQNFEARDFDRTLVIPFRTETVA 410 (875)
T ss_pred hh--ccccCCCCceEEeeecccc-C-cCcCc--cc-hhhhhhccccCc--------ccccccccccchhccccchHHHHH
Confidence 00 0000000000000000000 0 00000 00 122222111100 0000000000 001112223344
Q ss_pred HHHHHHHhC---C---CeEEEEecCchHHHHHHHHHHhC-----CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhc
Q 005858 336 LLLKKLYNS---G---HRVLLFAQMTQTLDILQDFLELR-----KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404 (673)
Q Consensus 336 ~ll~~~~~~---g---~kvlIFsq~~~~ld~l~~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~ 404 (673)
..+..+..+ | .|.||||....+++.+...|... |--+..|+|... +=++.|+.|-..
T Consensus 411 r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~k---------- 478 (875)
T COG4096 411 RELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDK---------- 478 (875)
T ss_pred HHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhc----------
Confidence 444444443 3 59999999999999999988654 233567888765 445678888743
Q ss_pred CCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc-------CCcC-eEEEEEEe
Q 005858 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI-------GQMN-HVLSINLV 465 (673)
Q Consensus 405 ~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri-------GQ~k-~V~Vy~lv 465 (673)
.....+.+|.+.+-+|||.+.+..++|+-.--+-..+.|.+||+-|+ ||.| ...|+.++
T Consensus 479 --e~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 479 --EKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred --CCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 56678899999999999999999999999999999999999999996 3444 46677665
No 69
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.9e-17 Score=185.25 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=106.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..+|...+......+.++||||......+.+...|...|+++..++|.+...++..+...++
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~-------------- 475 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQ-------------- 475 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCC--------------
Confidence 356778888888777778999999999999999999999999999999999988877766666655
Q ss_pred CCcEEEEEeccccccccCC---CCCC-----eeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHH
Q 005858 407 NDAFVFMISTRAGGVGLNL---VAAD-----TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL---~~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~ 477 (673)
.+ -++++|..+|.|+|+ .... +||.+|.|-|+..+.|+.||++|.|..=.... |+ |.|+.++.+
T Consensus 476 ~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 476 KG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred CC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 22 578999999999999 4666 99999999999999999999999998643322 22 335565554
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=6.1e-18 Score=189.66 Aligned_cols=115 Identities=22% Similarity=0.190 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
..|..++...+..+...|..|||||......+.+.+.|...|+++..++|. ..+|...+..|. +
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~a--------------g 451 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQA--------------G 451 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhc--------------C
Confidence 457777877777778899999999999999999999999999999999998 678999999997 6
Q ss_pred CcEEEEEeccccccccCCCC-------CCeeEeeCCCCCcchHHHHhHhhhccCCcCe
Q 005858 408 DAFVFMISTRAGGVGLNLVA-------ADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~-------a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
+...++++|..+|.|+|+.. .-+||.++.|-|+..+.|+.||++|.|..=.
T Consensus 452 ~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 452 RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred CCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 66678999999999999887 6699999999999999999999999998643
No 71
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.77 E-value=7.6e-18 Score=175.28 Aligned_cols=298 Identities=17% Similarity=0.211 Sum_probs=194.4
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcC----CCCCCEEEEECcc-cHHHHHHHHH---HHCCCCeEEEEeCChHHH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ----MSPGPFLVLCPLS-VTDGWVSEMA---KFTPKLEVLRYVGEREQR 124 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~----~~~~~~LIV~P~s-ll~~W~~E~~---k~~p~~~v~~~~g~~~~~ 124 (673)
..|..++.+.-+|+|||+.-+..+..+.... ...--+|||||.- +..|-..|.+ ++.+...+.+..|....+
T Consensus 117 l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~ 196 (543)
T KOG0342|consen 117 LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS 196 (543)
T ss_pred CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch
Confidence 3467899999999999998665544443222 2222379999984 4456555554 455677776666665543
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCccccCccc--HHHHHHHhhcCC
Q 005858 125 RNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQRLKNPSS--VLYNVLREHFLM 199 (673)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~~KN~~s--~~~~~l~~~~~~ 199 (673)
....+ ...+++++|.|++.+..+... |....-+++|+|||.++-.-.. .+-+++...-+.
T Consensus 197 ~e~~k---------------l~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~ 261 (543)
T KOG0342|consen 197 VEADK---------------LVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQ 261 (543)
T ss_pred HHHHH---------------hhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcccc
Confidence 33222 112579999999998665322 2222237999999999865432 344455432234
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005858 200 PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVE 279 (673)
Q Consensus 200 ~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~ 279 (673)
+..+++|||-- .. ...+.+. .+.|... ...
T Consensus 262 rqt~LFSAT~~-~k-----------------------------------------------V~~l~~~-~L~~d~~-~v~ 291 (543)
T KOG0342|consen 262 RQTLLFSATQP-SK-----------------------------------------------VKDLARG-ALKRDPV-FVN 291 (543)
T ss_pred ceeeEeeCCCc-HH-----------------------------------------------HHHHHHH-hhcCCce-Eee
Confidence 55699999931 11 1111111 1111000 000
Q ss_pred cCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHH
Q 005858 280 CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLD 359 (673)
Q Consensus 280 ~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld 359 (673)
+ ..+...-+. .......+......++.++-.+|++.... .|++|||..-.+..
T Consensus 292 ~----~d~~~~~Th----------------------e~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk 344 (543)
T KOG0342|consen 292 V----DDGGERETH----------------------ERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVK 344 (543)
T ss_pred c----CCCCCcchh----------------------hcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHH
Confidence 0 000000000 00001111222344456677777775443 89999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCC
Q 005858 360 ILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWN 439 (673)
Q Consensus 360 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wn 439 (673)
...+.|....+++..|||..++..|.....+|. .....+|++|++++.|+|.+..+-||-||+|-+
T Consensus 345 ~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~--------------kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d 410 (543)
T KOG0342|consen 345 FHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC--------------KAESGILVCTDVAARGLDIPDVDWVVQYDPPSD 410 (543)
T ss_pred HHHHHHhhcCCchhhhhcCCcccccchHHHHHh--------------hcccceEEecchhhccCCCCCceEEEEeCCCCC
Confidence 999999999999999999999999999999998 344578999999999999999999999999999
Q ss_pred cchHHHHhHhhhccCCc
Q 005858 440 PQVDKQALQRAHRIGQM 456 (673)
Q Consensus 440 p~~~~Qa~gR~~RiGQ~ 456 (673)
|..|++|+||..|-|-.
T Consensus 411 ~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 411 PEQYIHRVGRTAREGKE 427 (543)
T ss_pred HHHHHHHhccccccCCC
Confidence 99999999999996654
No 72
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=3.6e-17 Score=195.89 Aligned_cols=294 Identities=17% Similarity=0.156 Sum_probs=185.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCC-
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPK- 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~- 111 (673)
+..|+|+|..++..++ .|.+.++..+||+|||..++.++..+.. ....+|||||+ .++.||.+.+.++...
T Consensus 78 G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 4579999999886555 3688999999999999755544443322 24568999997 6779999999998753
Q ss_pred -CeEEEEeCChH----HHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 112 -LEVLRYVGERE----QRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 112 -~~v~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
..+....|... .+.... ..+ ....++|+|+|++.+......+....+++||+||||++-...
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~----~~l---------~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFL----ERL---------KEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHH----HHH---------hcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcc
Confidence 33333333221 111111 111 123579999999999887666666679999999999975311
Q ss_pred c--------------HHHHHHHhhcC-------------------------CCcEEEEecCCCCCCHHHHHHHHHHhCCC
Q 005858 187 S--------------VLYNVLREHFL-------------------------MPRRLLMTGTPIQNNLSELWALMHFCMPS 227 (673)
Q Consensus 187 s--------------~~~~~l~~~~~-------------------------~~~rllLTGTPi~N~~~El~~ll~~l~p~ 227 (673)
- ....++.. ++ ....+++|||.-+.....
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~-i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~----------- 285 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMEL-IRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV----------- 285 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHh-cccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-----------
Confidence 1 11111111 11 122344455532211110
Q ss_pred CCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhH
Q 005858 228 VFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKEL 307 (673)
Q Consensus 228 ~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~ 307 (673)
.++..++.-..
T Consensus 286 ---------------------------------------------------------------------~l~~~ll~~~v 296 (1176)
T PRK09401 286 ---------------------------------------------------------------------KLFRELLGFEV 296 (1176)
T ss_pred ---------------------------------------------------------------------HHhhccceEEe
Confidence 00111000000
Q ss_pred HHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchH---HHHHHHHHHhCCCcEEEEeCCcCHHHH
Q 005858 308 PKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQT---LDILQDFLELRKYSYERLDGSIRAEER 384 (673)
Q Consensus 308 ~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~---ld~l~~~L~~~g~~~~~i~G~~~~~~R 384 (673)
..... ......+... ....|...|..++..+ +..+||||+.... ++.+.++|...|+++..++|++
T Consensus 297 ~~~~~-~~rnI~~~yi--~~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----- 365 (1176)
T PRK09401 297 GSPVF-YLRNIVDSYI--VDEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----- 365 (1176)
T ss_pred cCccc-ccCCceEEEE--EcccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----
Confidence 00000 0000000000 0114555666666543 5689999998776 9999999999999999999999
Q ss_pred HHHHHhhccchhHhhhhhhcCCCCcEEEEEe---ccccccccCCCC-CCeeEeeCCCC------CcchHHHHhHhhhc
Q 005858 385 FAAIRHFSVQSAIERLYSEAGGNDAFVFMIS---TRAGGVGLNLVA-ADTVIFYEQDW------NPQVDKQALQRAHR 452 (673)
Q Consensus 385 ~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s---t~agg~GiNL~~-a~~VI~~D~~w------np~~~~Qa~gR~~R 452 (673)
.+.+++|. ++...|++.+ |..++.|||++. ..+||||+.|- ....+..++||.-.
T Consensus 366 ~~~l~~F~-------------~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ERKFEKFE-------------EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHHHHH-------------CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459998 5677777776 789999999999 89999999997 56677788888854
No 73
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.8e-17 Score=165.76 Aligned_cols=311 Identities=19% Similarity=0.235 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHH-HHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA-ISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--P 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~a-i~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p 110 (673)
.+..|-|..++..+++ |+.||=+.-+|+|||..- +-.+..+. ..+..--.||+.|. .+..|..+.|.-.. -
T Consensus 28 ~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLs-edP~giFalvlTPTrELA~QiaEQF~alGk~l 102 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLS-EDPYGIFALVLTPTRELALQIAEQFIALGKLL 102 (442)
T ss_pred CCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhc-cCCCcceEEEecchHHHHHHHHHHHHHhcccc
Confidence 3567888888876666 689999999999999864 34444442 33333447999998 46678888776544 4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc------ccccCCCccEEEEcCCccccC
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ------GFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~------~~l~~~~~~~vIvDEaH~~KN 184 (673)
++++.++.|..+.-..-. .-...+++|++|++.+.... ..+...+..++|+|||.++-+
T Consensus 103 ~lK~~vivGG~d~i~qa~---------------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~ 167 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIMQAA---------------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA 167 (442)
T ss_pred cceEEEEEccHHHhhhhh---------------hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc
Confidence 678888888765432211 12345799999999885432 122233457999999999987
Q ss_pred cccH-HHHHHHhhcCCC-cEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHH
Q 005858 185 PSSV-LYNVLREHFLMP-RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLK 262 (673)
Q Consensus 185 ~~s~-~~~~l~~~~~~~-~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~ 262 (673)
..-. .-..+...++.+ ..+++|+| +.++..+++. -++..+
T Consensus 168 ~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql~~---------------------~~i~k~---------------- 209 (442)
T KOG0340|consen 168 GCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQLFG---------------------CPITKS---------------- 209 (442)
T ss_pred cchhhHHhhhhccCCCccceEEEEee-hhhHHHHhhc---------------------CCcccc----------------
Confidence 5422 112222234444 67999999 2332222221 111000
Q ss_pred HHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHH
Q 005858 263 GILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLY 342 (673)
Q Consensus 263 ~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~ 342 (673)
...... ..|... ++ ..+|+.. +.....+|-..|..+|..+.
T Consensus 210 -------------~a~~~e--~~~~vs--tv--etL~q~y--------------------I~~~~~vkdaYLv~~Lr~~~ 250 (442)
T KOG0340|consen 210 -------------IAFELE--VIDGVS--TV--ETLYQGY--------------------ILVSIDVKDAYLVHLLRDFE 250 (442)
T ss_pred -------------cceEEe--ccCCCC--ch--hhhhhhe--------------------eecchhhhHHHHHHHHhhhh
Confidence 000000 000000 00 0111110 11112344456777888776
Q ss_pred h-CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc
Q 005858 343 N-SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421 (673)
Q Consensus 343 ~-~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~ 421 (673)
+ ....++||.+...+..+|...|...++.+..+++-+++.+|..++.+|+ ++..-+|+.|++++.
T Consensus 251 ~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFr--------------s~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 251 NKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFR--------------SNAARILIATDVASR 316 (442)
T ss_pred hccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHh--------------hcCccEEEEechhhc
Confidence 6 5678999999999999999999999999999999999999999999998 666778999999999
Q ss_pred ccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 422 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 422 GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
|++++..+.||++|.|-.|..|.+|.||..|.|..
T Consensus 317 GLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~ 351 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRK 351 (442)
T ss_pred CCCCCceeEEEecCCCCCHHHHHHhhcchhcccCC
Confidence 99999999999999999999999999999888864
No 74
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.77 E-value=3.6e-17 Score=171.66 Aligned_cols=331 Identities=17% Similarity=0.213 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhh---cCCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKF---SQMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~---~~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
..+.+-|...|...+. |...|-|.-+|+|||+.-+.-+ ..|.+ .....--+|||.|+ .+..|--.-+.+..
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 4567788888765544 5778889999999999765443 23322 22222337999998 45567666666544
Q ss_pred --CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccC
Q 005858 110 --PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 110 --p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN 184 (673)
..+....+.|..+......+ ....+|+|+|++.+..+. ..|.-.+..++|+|||.|+-.
T Consensus 166 k~h~fSaGLiiGG~~~k~E~eR----------------i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELER----------------ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred hccccccceeecCchhHHHHHh----------------hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH
Confidence 24555555565554333221 123689999999997764 446666788999999999876
Q ss_pred ccc--HHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHH
Q 005858 185 PSS--VLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 185 ~~s--~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L 261 (673)
... .+..++.. ++ .+..+++|||+- ++..+|..+ ++-+|..... +.+.
T Consensus 230 MGFk~tL~~Ii~~-lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~vsv-------he~a------------------- 280 (758)
T KOG0343|consen 230 MGFKKTLNAIIEN-LPKKRQTLLFSATQT-KSVKDLARL-SLKDPVYVSV-------HENA------------------- 280 (758)
T ss_pred HhHHHHHHHHHHh-CChhheeeeeecccc-hhHHHHHHh-hcCCCcEEEE-------eccc-------------------
Confidence 432 33344444 44 456799999984 344444332 1112211100 0000
Q ss_pred HHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHH
Q 005858 262 KGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKL 341 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~ 341 (673)
..-+|.+.. ...+......|+..|-..+..
T Consensus 281 ---------------------------~~atP~~L~----------------------Q~y~~v~l~~Ki~~L~sFI~s- 310 (758)
T KOG0343|consen 281 ---------------------------VAATPSNLQ----------------------QSYVIVPLEDKIDMLWSFIKS- 310 (758)
T ss_pred ---------------------------cccChhhhh----------------------heEEEEehhhHHHHHHHHHHh-
Confidence 000110000 000011123455555555555
Q ss_pred HhCCCeEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 342 YNSGHRVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 342 ~~~g~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
....|.|||-..-.....+...+... |++...++|.+++..|..+..+|. ....++|++|+.+
T Consensus 311 -hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~--------------~~~~~vLF~TDv~ 375 (758)
T KOG0343|consen 311 -HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV--------------RKRAVVLFCTDVA 375 (758)
T ss_pred -ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH--------------HhcceEEEeehhh
Confidence 34568899988877777777766543 999999999999999999999998 5566899999999
Q ss_pred ccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHH
Q 005858 420 GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKL 482 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~ 482 (673)
+.||+++..|.||-+|+|-+...|++|.||..|.+..-...+|- + -+=+|.+..+++.|.
T Consensus 376 aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L--~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 376 ARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML--T-PSEEEAMLKKLQKKK 435 (758)
T ss_pred hccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE--c-chhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988665544432 2 234688888887773
No 75
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=4.2e-17 Score=195.99 Aligned_cols=304 Identities=17% Similarity=0.163 Sum_probs=176.7
Q ss_pred EECCCcchHHHHHHH-HHHHhhhcC---------CCCCCEEEEECc-ccHHHHHHHHHH-----------H---CCCCeE
Q 005858 60 LGDEMGLGKTLQAIS-FLSYLKFSQ---------MSPGPFLVLCPL-SVTDGWVSEMAK-----------F---TPKLEV 114 (673)
Q Consensus 60 Lade~GlGKTl~ai~-~i~~l~~~~---------~~~~~~LIV~P~-sll~~W~~E~~k-----------~---~p~~~v 114 (673)
++.+||+|||+.+.. ++..+.... .....+|+|+|. .+..+-.+.++. + .+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 356899999999876 555554321 112358999997 455555555432 1 246888
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc---cccCCCccEEEEcCCccccCcc--cHH
Q 005858 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQRLKNPS--SVL 189 (673)
Q Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~---~l~~~~~~~vIvDEaH~~KN~~--s~~ 189 (673)
.+++|+.......+. ...+++|+|||++.+..... ...-.+.++|||||+|.+.+.+ +.+
T Consensus 81 ~vrtGDt~~~eR~rl---------------l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~L 145 (1490)
T PRK09751 81 GIRTGDTPAQERSKL---------------TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHL 145 (1490)
T ss_pred EEEECCCCHHHHHHH---------------hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHH
Confidence 889997665443221 12247999999998854311 1112346899999999997542 222
Q ss_pred HHH---HHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 190 YNV---LREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 190 ~~~---l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
... +.... ....+|+||||- . ++.++- .||....- .. +......
T Consensus 146 el~LeRL~~l~~~~~QrIgLSATI-~-n~eevA---~~L~g~~p----------v~-Iv~~~~~---------------- 193 (1490)
T PRK09751 146 ALSLERLDALLHTSAQRIGLSATV-R-SASDVA---AFLGGDRP----------VT-VVNPPAM---------------- 193 (1490)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeeC-C-CHHHHH---HHhcCCCC----------EE-EECCCCC----------------
Confidence 222 22222 235789999994 3 345443 33321100 00 0000000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
+.. ++ .+.+|.. .+. .+ . ................+-+......++..+ ..+
T Consensus 194 -----r~~--~l----~v~vp~~-d~~----~~-~-----------~~~~~~~~~~~~~r~~~i~~~v~~~il~~i-~~~ 244 (1490)
T PRK09751 194 -----RHP--QI----RIVVPVA-NMD----DV-S-----------SVASGTGEDSHAGREGSIWPYIETGILDEV-LRH 244 (1490)
T ss_pred -----ccc--ce----EEEEecC-chh----hc-c-----------ccccccccccchhhhhhhhHHHHHHHHHHH-hcC
Confidence 000 00 0001100 000 00 0 000000000000000000111122333333 356
Q ss_pred CeEEEEecCchHHHHHHHHHHhCC---------------------------------CcEEEEeCCcCHHHHHHHHHhhc
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRK---------------------------------YSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g---------------------------------~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
.++||||+.....+.+...|.... +.+..+||+++.++|..+.+.|+
T Consensus 245 ~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK 324 (1490)
T PRK09751 245 RSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALK 324 (1490)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHH
Confidence 799999999999999888886431 11456789999999999999998
Q ss_pred cchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc
Q 005858 393 VQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI 453 (673)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 453 (673)
++..-+|++|.+++.|||+...+.||++++|.+...+.||+||++|.
T Consensus 325 --------------~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 325 --------------SGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred --------------hCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 44456789999999999999999999999999999999999999985
No 76
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=4.8e-17 Score=172.12 Aligned_cols=316 Identities=20% Similarity=0.210 Sum_probs=204.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHH-HhhhcCC---------CCCCEEEEECc-ccHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLS-YLKFSQM---------SPGPFLVLCPL-SVTDGWVS 103 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~-~l~~~~~---------~~~~~LIV~P~-sll~~W~~ 103 (673)
..+.|+|+.++.- ...|++.+.+..+|+|||..-+.-+. +++..+. .....||++|+ .++.|-..
T Consensus 95 ~~ptpvQk~sip~----i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPI----ISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeeccce----eecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 4577888888753 33468889999999999998765443 3333221 11237999998 68899999
Q ss_pred HHHHHC--CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCC
Q 005858 104 EMAKFT--PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEA 179 (673)
Q Consensus 104 E~~k~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEa 179 (673)
|.+++. ..++..+..|..+.....+. ...++|++++|+..+..-. ..+..-...++|+|||
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~---------------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA 235 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRF---------------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA 235 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhh---------------hccCccEEEecCchhhhhhhcceeehhhCcEEEecch
Confidence 999987 34566666665444433332 3446899999999886542 3333344569999999
Q ss_pred ccccC---cccHHHHHHHhhc-----CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchh
Q 005858 180 QRLKN---PSSVLYNVLREHF-----LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR 251 (673)
Q Consensus 180 H~~KN---~~s~~~~~l~~~~-----~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~ 251 (673)
.++-. ..-...+.+.. . ..+..+++|||=- -.+..+. ..|+.-. |...
T Consensus 236 DrMlD~mgF~p~Ir~iv~~-~~~~~~~~~qt~mFSAtfp-~~iq~l~--~~fl~~~-----------yi~l--------- 291 (482)
T KOG0335|consen 236 DRMLDEMGFEPQIRKIVEQ-LGMPPKNNRQTLLFSATFP-KEIQRLA--ADFLKDN-----------YIFL--------- 291 (482)
T ss_pred HHhhhhccccccHHHHhcc-cCCCCccceeEEEEeccCC-hhhhhhH--HHHhhcc-----------ceEE---------
Confidence 99865 22233333332 2 1234577787721 1111000 0000000 0000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcH
Q 005858 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKL 331 (673)
Q Consensus 252 ~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl 331 (673)
+--.+-++...+. +.-+.-....|.
T Consensus 292 --------------aV~rvg~~~~ni~-----------------------------------------q~i~~V~~~~kr 316 (482)
T KOG0335|consen 292 --------------AVGRVGSTSENIT-----------------------------------------QKILFVNEMEKR 316 (482)
T ss_pred --------------EEeeeccccccce-----------------------------------------eEeeeecchhhH
Confidence 0000000000000 000000122333
Q ss_pred HHHHHHHHHHHh---C----CCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhc
Q 005858 332 VVLDLLLKKLYN---S----GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404 (673)
Q Consensus 332 ~~l~~ll~~~~~---~----g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~ 404 (673)
..|..+|..... . -++++||+.....++.+..+|...++++..|+|..++.+|.+.++.|.
T Consensus 317 ~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr------------ 384 (482)
T KOG0335|consen 317 SKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFR------------ 384 (482)
T ss_pred HHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhh------------
Confidence 334444443321 1 248999999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 405 ~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
++..-+|++|.++..|||..+..+||+||+|-+-..|.+|+||.+|.|+.=....+
T Consensus 385 --~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 385 --NGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred --cCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 44445788999999999999999999999999999999999999999987544443
No 77
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=167.26 Aligned_cols=294 Identities=19% Similarity=0.288 Sum_probs=195.5
Q ss_pred CCCCeEEECCCcchHHHHHHHH--H---HHhhhcCCCCCC-EEEEECc-ccHHHHHHHHHHHC-CC-CeEEEEeCChHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISF--L---SYLKFSQMSPGP-FLVLCPL-SVTDGWVSEMAKFT-PK-LEVLRYVGEREQR 124 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~--i---~~l~~~~~~~~~-~LIV~P~-sll~~W~~E~~k~~-p~-~~v~~~~g~~~~~ 124 (673)
+|..+|-...+|+|||+.-+.- + +..+......+| +||+.|. .+..|-.-|..+.- .. ..+.+|.|....
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~- 334 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRN- 334 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCch-
Confidence 4667888899999999976532 1 122222222333 7888997 45567777776553 23 445555554422
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccC--cccHHHHHHHhhcCCC
Q 005858 125 RNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKN--PSSVLYNVLREHFLMP 200 (673)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN--~~s~~~~~l~~~~~~~ 200 (673)
..+. . -..+++++|.|+..|... ...+.-....|+|+|||.++.. ..-+..+.+...-+-+
T Consensus 335 eqie-----~----------lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDR 399 (629)
T KOG0336|consen 335 EQIE-----D----------LKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDR 399 (629)
T ss_pred hHHH-----H----------HhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcc
Confidence 2111 1 123579999999988553 2334444578999999999876 4456777877733444
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-
Q 005858 201 RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVE- 279 (673)
Q Consensus 201 ~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~- 279 (673)
..++-|||-- .. ++++...|+ |+-+.-
T Consensus 400 qtvmTSATWP-~~-----------------------------------------------VrrLa~sY~----Kep~~v~ 427 (629)
T KOG0336|consen 400 QTVMTSATWP-EG-----------------------------------------------VRRLAQSYL----KEPMIVY 427 (629)
T ss_pred eeeeecccCc-hH-----------------------------------------------HHHHHHHhh----hCceEEE
Confidence 4566677721 00 111111111 100000
Q ss_pred cCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHH
Q 005858 280 CGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLD 359 (673)
Q Consensus 280 ~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld 359 (673)
.+.++|.. ........+....+.|+..+..++..+ ....|+|||+....++|
T Consensus 428 vGsLdL~a---------------------------~~sVkQ~i~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 428 VGSLDLVA---------------------------VKSVKQNIIVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMAD 479 (629)
T ss_pred ecccceee---------------------------eeeeeeeEEecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhh
Confidence 00111100 000000112223456666666666655 56789999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCC
Q 005858 360 ILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWN 439 (673)
Q Consensus 360 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wn 439 (673)
-|..-|...|+....++|.-.+.+|+.+++.|+ ++...+|+.|+.++.||++....||++||-|-|
T Consensus 480 ~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--------------sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~n 545 (629)
T KOG0336|consen 480 HLSSDFCLKGISSQSLHGNREQSDREMALEDFK--------------SGEVRILVATDLASRGLDVPDITHVYNYDFPRN 545 (629)
T ss_pred hccchhhhcccchhhccCChhhhhHHHHHHhhh--------------cCceEEEEEechhhcCCCchhcceeeccCCCcc
Confidence 999999999999999999999999999999998 777788999999999999999999999999999
Q ss_pred cchHHHHhHhhhccCCcC
Q 005858 440 PQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 440 p~~~~Qa~gR~~RiGQ~k 457 (673)
-..|.+|+||.+|.|.+-
T Consensus 546 IeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 546 IEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred HHHHHHHhcccccCCCCc
Confidence 999999999999999754
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.75 E-value=8.6e-18 Score=178.83 Aligned_cols=310 Identities=15% Similarity=0.174 Sum_probs=205.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC---CCe
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP---KLE 113 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p---~~~ 113 (673)
.+-|..|+..... +...|+..--|+|||++-..++..-.......-..+||+|. .+.-|..+.+.+.+| +++
T Consensus 49 tkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 49 TKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred Cchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 3455555543332 35678899999999997443332222233233347999998 566788888988887 578
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCcccH---
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSSV--- 188 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~s~--- 188 (673)
+.+|.|.......+.+. ....|+|-|++.+... ...+.....+++|+|||..+-...+-
T Consensus 125 csvfIGGT~~~~d~~rl----------------k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~ 188 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIRL----------------KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDD 188 (980)
T ss_pred eEEEecCchhhhhhhhh----------------hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHH
Confidence 88888877655443221 1246999999988664 45667778899999999998764443
Q ss_pred HHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 189 ~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
....+.. ++. +..++.|||=-+ ++.+ .|.+.++.
T Consensus 189 In~ii~s-lP~~rQv~a~SATYp~-nLdn-------------------------------------------~Lsk~mrd 223 (980)
T KOG4284|consen 189 INIIINS-LPQIRQVAAFSATYPR-NLDN-------------------------------------------LLSKFMRD 223 (980)
T ss_pred HHHHHHh-cchhheeeEEeccCch-hHHH-------------------------------------------HHHHHhcc
Confidence 3333443 444 556789999321 2222 12222322
Q ss_pred HHhhhhh-hhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 268 FMLRRTK-QKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 268 ~~lrr~k-~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
-++-|.. .++. |-.. +++|.. .+..+.-....--|+..|.+++..+. -.
T Consensus 224 p~lVr~n~~d~~------L~Gi-------kQyv~~---------------~~s~nnsveemrlklq~L~~vf~~ip--y~ 273 (980)
T KOG4284|consen 224 PALVRFNADDVQ------LFGI-------KQYVVA---------------KCSPNNSVEEMRLKLQKLTHVFKSIP--YV 273 (980)
T ss_pred cceeecccCCce------eech-------hheeee---------------ccCCcchHHHHHHHHHHHHHHHhhCc--hH
Confidence 2222222 1110 0000 000000 00000000001124445555555542 24
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
..||||....-++-+..+|...|+++..|.|.|++.+|..+++.++ .....+|+||+..+.||+-.
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--------------~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR--------------AFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh--------------hceEEEEEecchhhccCCcc
Confidence 6899999999999999999999999999999999999999999998 44556899999999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
.++.||++|+|-+...|.+||||++|+|..
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~ 369 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAH 369 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhccccccc
Confidence 999999999999999999999999999974
No 79
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.7e-16 Score=175.64 Aligned_cols=132 Identities=18% Similarity=0.218 Sum_probs=104.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|...|..++..+...+..+||||......+.+...|...|+++..|+|..+ +|...+..|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~a-------------- 518 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARA-------------- 518 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHc--------------
Confidence 345888888888887777889999999999999999999999999999999855 5556666665
Q ss_pred CCcEEEEEeccccccccCCC---CCC-----eeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHH
Q 005858 407 NDAFVFMISTRAGGVGLNLV---AAD-----TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRA 478 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~---~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~ 478 (673)
+...-++++|..+|.|+|+. ... +||.+|.|-|+..|.|++||++|.|..=.+. .|+ |.|+.++.+-
T Consensus 519 g~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~~ 593 (656)
T PRK12898 519 GQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQSF 593 (656)
T ss_pred CCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHhh
Confidence 22234889999999999988 333 9999999999999999999999999753322 222 3466666554
Q ss_pred H
Q 005858 479 E 479 (673)
Q Consensus 479 ~ 479 (673)
.
T Consensus 594 ~ 594 (656)
T PRK12898 594 L 594 (656)
T ss_pred h
Confidence 3
No 80
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.74 E-value=2.4e-16 Score=178.74 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=195.3
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH----------HHhhh--cCCCCCCEEEEECc-ccHH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL----------SYLKF--SQMSPGPFLVLCPL-SVTD 99 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i----------~~l~~--~~~~~~~~LIV~P~-sll~ 99 (673)
...+|++.|.+.-..++..+..+...|+..++|+|||.|.=-++ ..+.. .....++++|++|. .++.
T Consensus 157 ~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 157 SKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred ccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 35789999998888888888889999999999999998842222 11110 12234579999997 4567
Q ss_pred HHHHHHHHHC-----CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEE
Q 005858 100 GWVSEMAKFT-----PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYT 174 (673)
Q Consensus 100 ~W~~E~~k~~-----p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~v 174 (673)
|...++.+.. ++..+.+..|+.... ... ......++++.|+.... . .-.++.+|
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~--------------t~~k~~~Ilv~T~~L~l---~--~L~~v~~V 295 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN--------------TNPKPYGLVFSTHKLTL---N--KLFDYGTV 295 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchH--Hhh--------------cccCCCCEEEEeCcccc---c--ccccCCEE
Confidence 7778876533 334455555554311 000 01124578888854311 1 12357899
Q ss_pred EEcCCccccCcccHHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhC-CCCCCChHHHHHHhhhhccCCCcchhh
Q 005858 175 IIDEAQRLKNPSSVLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCM-PSVFGTLNQFLSTFKDAVHSSSAPKRG 252 (673)
Q Consensus 175 IvDEaH~~KN~~s~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~-p~~~~~~~~f~~~f~~~~~~~~~~~~~ 252 (673)
|+||||+.-.........+...... +..+++|||+-. ....+ ..|+. |..+.. .
T Consensus 296 VIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~~~p~~I~I---------------~----- 351 (675)
T PHA02653 296 IIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFFPNPAFVHI---------------P----- 351 (675)
T ss_pred EccccccCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHhcCCcEEEe---------------C-----
Confidence 9999999755443333333322222 357999999632 12222 12221 110000 0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccc------cHHHHHHHHHHHhhhHHHHHhhccccccccccccc
Q 005858 253 KIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEI------TVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326 (673)
Q Consensus 253 ~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~------~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~ 326 (673)
.+ .++|..+. .+.+...|-.
T Consensus 352 ------------------gr-----------t~~pV~~~yi~~~~~~~~~~~y~~------------------------- 377 (675)
T PHA02653 352 ------------------GG-----------TLFPISEVYVKNKYNPKNKRAYIE------------------------- 377 (675)
T ss_pred ------------------CC-----------cCCCeEEEEeecCcccccchhhhH-------------------------
Confidence 00 00110000 0001100100
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhc
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~ 404 (673)
..|...+..+.......+..+|||+.....++.+.+.|... ++.+..++|++++. .+.+++|..
T Consensus 378 -~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~----------- 443 (675)
T PHA02653 378 -EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYS----------- 443 (675)
T ss_pred -HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhc-----------
Confidence 00111222222211234678999999999999999999877 79999999999964 566777731
Q ss_pred CCCCcEEEEEeccccccccCCCCCCeeEeeC---CC---------CCcchHHHHhHhhhccCCcCeEEEEEEecCCCH
Q 005858 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYE---QD---------WNPQVDKQALQRAHRIGQMNHVLSINLVTEHTV 470 (673)
Q Consensus 405 ~~~~~~vlL~st~agg~GiNL~~a~~VI~~D---~~---------wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~Ti 470 (673)
++..-+|++|..+++||++.++++||.++ .| .+.+.+.||.||++|. ++-.+|+|.++...
T Consensus 444 --~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 444 --SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred --cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 34567899999999999999999999997 22 2667889999999997 46778888887654
No 81
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=5.6e-16 Score=165.78 Aligned_cols=316 Identities=17% Similarity=0.189 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC------CCC
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT------PKL 112 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~------p~~ 112 (673)
||.++++-+... .....+++.++|+|||..++..+.. ...++++++|. +++.+|.+.+..++ .+.
T Consensus 1 hQ~~~~~~~~~~--~~~~~~i~apTGsGKT~~~~~~~l~------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSK--DADIIFNTAPTGAGKTLAWLTPLLH------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcC--CCCEEEEECCCCCCHHHHHHHHHHH------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 799998776654 1124788999999999988765542 12457999996 67788888887775 245
Q ss_pred eEEEEeCChHHHH-HHHHH---------HHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc-------c---cCCCcc
Q 005858 113 EVLRYVGEREQRR-NIRRT---------MYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-------L---SQIPWC 172 (673)
Q Consensus 113 ~v~~~~g~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-------l---~~~~~~ 172 (673)
.+..+.|...... ..... ....+... .....+.+++|+++++...... . ....++
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~-----~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNP-----IGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHH-----HhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 6666777522110 01000 00000000 1234578999999988642111 0 013678
Q ss_pred EEEEcCCccccCccc-------HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccC
Q 005858 173 YTIIDEAQRLKNPSS-------VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHS 245 (673)
Q Consensus 173 ~vIvDEaH~~KN~~s-------~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~ 245 (673)
+||+||+|.+..... .....+.......+.++|||||-. +++..+.-+ .. ++.+...
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~----~~~~~l~~~--~~----------~~~~~~~ 211 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP----ALILRLQNA--KQ----------AGVKIAP 211 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH----HHHHHHHhc--cc----------cCceeee
Confidence 999999999874221 122222221123578999999842 222222210 00 0000000
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccccc
Q 005858 246 SSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325 (673)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~ 325 (673)
..... -......+ +....... .....+|+... ....
T Consensus 212 v~g~~--~~~~~~~~--------~~~~~~~~---~~~~~~~~i~~-------------------------------~~~~ 247 (357)
T TIGR03158 212 IDGEK--YQFPDNPE--------LEADNKTQ---SFRPVLPPVEL-------------------------------ELIP 247 (357)
T ss_pred ecCcc--cccCCChh--------hhcccccc---ccceeccceEE-------------------------------EEEe
Confidence 00000 00000000 00000000 00000111000 0000
Q ss_pred ccCCcHHHHHHHHHHHH-----hCCCeEEEEecCchHHHHHHHHHHhCC--CcEEEEeCCcCHHHHHHHHHhhccchhHh
Q 005858 326 TASGKLVVLDLLLKKLY-----NSGHRVLLFAQMTQTLDILQDFLELRK--YSYERLDGSIRAEERFAAIRHFSVQSAIE 398 (673)
Q Consensus 326 ~~s~Kl~~l~~ll~~~~-----~~g~kvlIFsq~~~~ld~l~~~L~~~g--~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 398 (673)
....|...+..++..+. ..+.++||||+....++.+...|...+ +.+..++|.++..+|.+..
T Consensus 248 ~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------- 317 (357)
T TIGR03158 248 APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------- 317 (357)
T ss_pred CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc----------
Confidence 01122222333332221 357899999999999999999998764 5788999999998886532
Q ss_pred hhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhh
Q 005858 399 RLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAH 451 (673)
Q Consensus 399 ~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~ 451 (673)
...+|++|++++.|||+.. +.|| ++ +-++..|.||+||++
T Consensus 318 ----------~~~iLVaTdv~~rGiDi~~-~~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 318 ----------QFDILLGTSTVDVGVDFKR-DWLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----------cCCEEEEecHHhcccCCCC-ceEE-EC-CCCHHHHhhhcccCC
Confidence 1258899999999999986 4666 56 678899999999974
No 82
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=183.72 Aligned_cols=336 Identities=20% Similarity=0.233 Sum_probs=221.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---C-
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---P- 110 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p- 110 (673)
.||.||.+|+..+.+ |.++|+.-.||+|||..-+..|-.....+... .+|+|-|. .|...-.+.|.++. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 399999999875544 68999999999999999877665554455444 58999996 56677777787775 4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc------ccccCCCccEEEEcCCccccC
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ------GFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~------~~l~~~~~~~vIvDEaH~~KN 184 (673)
.+.+..|.|+....+.. .+ ...+++|++|+|+|+.... -.+....+.+|||||+|.+..
T Consensus 145 ~v~~~~y~Gdt~~~~r~--~~-------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 145 KVTFGRYTGDTPPEERR--AI-------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred cceeeeecCCCChHHHH--HH-------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 57788888876543321 11 2346899999999996521 111222388999999999976
Q ss_pred c-ccHHHHHHHh---hcC----CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCC-CcchhhhHH
Q 005858 185 P-SSVLYNVLRE---HFL----MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS-SAPKRGKIK 255 (673)
Q Consensus 185 ~-~s~~~~~l~~---~~~----~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~-~~~~~~~~~ 255 (673)
. .|.....+++ .+. ....++.|||- ++...|...+....... .....
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~v~~~g---- 265 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVPVDEDG---- 265 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceeeccCCC----
Confidence 3 3333333332 222 34568899992 22223333222211000 00000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHH
Q 005858 256 EQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLD 335 (673)
Q Consensus 256 ~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~ 335 (673)
..+....+ ....|+....... +...+...+.
T Consensus 266 --------------~~~~~~~~----~~~~p~~~~~~~~-------------------------------~r~s~~~~~~ 296 (851)
T COG1205 266 --------------SPRGLRYF----VRREPPIRELAES-------------------------------IRRSALAELA 296 (851)
T ss_pred --------------CCCCceEE----EEeCCcchhhhhh-------------------------------cccchHHHHH
Confidence 00000000 0012221110000 1224455677
Q ss_pred HHHHHHHhCCCeEEEEecCchHHHHHH----HHHHhCC----CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 336 LLLKKLYNSGHRVLLFAQMTQTLDILQ----DFLELRK----YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 336 ~ll~~~~~~g~kvlIFsq~~~~ld~l~----~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
.++..+..+|-+.|+|+.+...+..+. ..+...+ ..+..+.|++..++|..+...|+ .
T Consensus 297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~--------------~ 362 (851)
T COG1205 297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK--------------E 362 (851)
T ss_pred HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh--------------c
Confidence 788888889999999999999988885 3344444 56788899999999999999998 5
Q ss_pred CcEEEEEeccccccccCCCCCCeeEeeCCCC-CcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQDW-NPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
+...++++|.|+-.||++...+.||....|- .-....|+.||++|-||.-. ++...-.+.+|.++...-..
T Consensus 363 g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~~p~~ 434 (851)
T COG1205 363 GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLRHPEE 434 (851)
T ss_pred CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhhCcHh
Confidence 5667899999999999999999999999998 78999999999999995433 22233366777776655443
No 83
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.4e-15 Score=159.54 Aligned_cols=318 Identities=20% Similarity=0.247 Sum_probs=182.3
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhc-----CCCCCC-EEEEECc-ccHHHHHHHHHHHCCCCeEEE----EeCChH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFS-----QMSPGP-FLVLCPL-SVTDGWVSEMAKFTPKLEVLR----YVGERE 122 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~-----~~~~~~-~LIV~P~-sll~~W~~E~~k~~p~~~v~~----~~g~~~ 122 (673)
.|+.+++-..+|+|||+.-+.-+-..... ....|| .||++|+ .++.|-.+.+.+.......++ ..|.+.
T Consensus 173 ~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkk 252 (708)
T KOG0348|consen 173 EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKK 252 (708)
T ss_pred cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccccc
Confidence 36889999999999999877665444322 123344 6999997 677888888888775444332 344443
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccC---CCccEEEEcCCccccCcc--cHHHHHHHhhc
Q 005858 123 QRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQ---IPWCYTIIDEAQRLKNPS--SVLYNVLREHF 197 (673)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~---~~~~~vIvDEaH~~KN~~--s~~~~~l~~~~ 197 (673)
..++-| -..+.+++|.|++.+..+...-.. ....+||+|||.++-.-. -.+.+++.. +
T Consensus 253 KSEKAR----------------LRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~-v 315 (708)
T KOG0348|consen 253 KSEKAR----------------LRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA-V 315 (708)
T ss_pred ccHHHH----------------HhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH-H
Confidence 332222 123578999999999776544333 345689999999975422 112222221 1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 005858 198 LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKL 277 (673)
Q Consensus 198 ~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v 277 (673)
.. +||.-.+ ..+....++.++-.-.+.-..+.+
T Consensus 316 ~~----------~~~~e~~-------------------------------------~~~lp~q~q~mLlSATLtd~V~rL 348 (708)
T KOG0348|consen 316 HS----------IQNAECK-------------------------------------DPKLPHQLQNMLLSATLTDGVNRL 348 (708)
T ss_pred hh----------ccchhcc-------------------------------------cccccHHHHhHhhhhhhHHHHHHH
Confidence 00 0000000 000011223333222222222222
Q ss_pred hhcCCccCCCccccc----HHHHHHHHHHHhhhHHHHHhhccc--------ccccccccc---ccCCcHH--HHHHHHHH
Q 005858 278 VECGHLMLPPLTEIT----VLQKKVYASILRKELPKLLALSSR--------TANHQSLQN---TASGKLV--VLDLLLKK 340 (673)
Q Consensus 278 ~~~~~~~lp~~~e~~----~~Q~~~y~~~l~~~~~~l~~~~~~--------~~~~~~l~~---~~s~Kl~--~l~~ll~~ 340 (673)
.+ +.|.....+. ..|.. ....++...... ......|.. ...+|+. .|..+|..
T Consensus 349 a~---~sLkDpv~I~ld~s~~~~~-------p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~ 418 (708)
T KOG0348|consen 349 AD---LSLKDPVYISLDKSHSQLN-------PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLN 418 (708)
T ss_pred hh---ccccCceeeeccchhhhcC-------cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHH
Confidence 11 1121111111 01110 000111111111 000011111 1344544 45555554
Q ss_pred HHh--CCCeEEEEecCchHHHHHHHHHH----h------------------CCCcEEEEeCCcCHHHHHHHHHhhccchh
Q 005858 341 LYN--SGHRVLLFAQMTQTLDILQDFLE----L------------------RKYSYERLDGSIRAEERFAAIRHFSVQSA 396 (673)
Q Consensus 341 ~~~--~g~kvlIFsq~~~~ld~l~~~L~----~------------------~g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 396 (673)
... ...|+|||-....+.+.=.+.|. . .+..+.+++|+|++++|...+..|.
T Consensus 419 ~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs---- 494 (708)
T KOG0348|consen 419 KVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFS---- 494 (708)
T ss_pred HhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhc----
Confidence 432 34578888766665544443332 1 1456899999999999999999998
Q ss_pred HhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeE
Q 005858 397 IERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHV 459 (673)
Q Consensus 397 ~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 459 (673)
.....+|++|++++.||||+....||-||+|..+..|.+|+||..|+|-+-.-
T Consensus 495 ----------~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 495 ----------HSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA 547 (708)
T ss_pred ----------cccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce
Confidence 44455899999999999999999999999999999999999999999986543
No 84
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.72 E-value=1.3e-17 Score=168.00 Aligned_cols=321 Identities=21% Similarity=0.310 Sum_probs=199.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHH----HHHH--HHhh-hcCCCCCC-EEEEECcc-cHHHHHHHHHH
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA----ISFL--SYLK-FSQMSPGP-FLVLCPLS-VTDGWVSEMAK 107 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~a----i~~i--~~l~-~~~~~~~~-~LIV~P~s-ll~~W~~E~~k 107 (673)
+.|-|..|+.-+++ |+..|--.-+|+|||++- |.|+ ..+. .-....+| -|||||.. +..|-.+-+..
T Consensus 193 PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 193 PTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 44555555543322 455555566899999863 2222 1111 11112344 49999974 33333332332
Q ss_pred H--------CCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEc
Q 005858 108 F--------TPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIID 177 (673)
Q Consensus 108 ~--------~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvD 177 (673)
+ +|.++.+.+.|.-..+..+... ..+.++++.|+..+..-. ..+.---+.|+.+|
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~eql~~v---------------~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lD 333 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVREQLDVV---------------RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLD 333 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHHHHHHHH---------------hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhh
Confidence 2 3777777777777666554321 224689999998775421 11222235689999
Q ss_pred CCccccCcc--cHHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhH
Q 005858 178 EAQRLKNPS--SVLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI 254 (673)
Q Consensus 178 EaH~~KN~~--s~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 254 (673)
||.|+-.-. ......+. .|++ +..+++|||.-. . .+.|..
T Consensus 334 EADRmiDmGFEddir~iF~-~FK~QRQTLLFSATMP~-K----------------------IQ~FAk------------- 376 (610)
T KOG0341|consen 334 EADRMIDMGFEDDIRTIFS-FFKGQRQTLLFSATMPK-K----------------------IQNFAK------------- 376 (610)
T ss_pred hHHHHhhccchhhHHHHHH-HHhhhhheeeeeccccH-H----------------------HHHHHH-------------
Confidence 999986633 22333443 3544 457999999420 0 011111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHH
Q 005858 255 KEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVL 334 (673)
Q Consensus 255 ~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l 334 (673)
..+++|..+..-+. + --.+.+.|.-.|-.- -+|+..|
T Consensus 377 -------SALVKPvtvNVGRA-----G------AAsldViQevEyVkq-------------------------EaKiVyl 413 (610)
T KOG0341|consen 377 -------SALVKPVTVNVGRA-----G------AASLDVIQEVEYVKQ-------------------------EAKIVYL 413 (610)
T ss_pred -------hhcccceEEecccc-----c------ccchhHHHHHHHHHh-------------------------hhhhhhH
Confidence 11122221111110 0 011334454434221 1233334
Q ss_pred HHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 335 DLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
.++ +....-.|||||.-..-.|.|.+||-.+|+..+.|+|+..+++|..+|+.|+ .+..-+|+
T Consensus 414 LeC---LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr--------------~gkKDVLV 476 (610)
T KOG0341|consen 414 LEC---LQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFR--------------AGKKDVLV 476 (610)
T ss_pred HHH---hccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHh--------------cCCCceEE
Confidence 444 4456779999999999999999999999999999999999999999999999 44456688
Q ss_pred eccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHH
Q 005858 415 STRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIM 475 (673)
Q Consensus 415 st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~ 475 (673)
.|++++-|+++++..+||+||+|-.-.+|.+|+||.+|-|.+-- .-.|+.+++-+..++
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLl 535 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLL 535 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHH
Confidence 99999999999999999999999999999999999999987642 223556665444443
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=2.5e-14 Score=164.71 Aligned_cols=326 Identities=18% Similarity=0.147 Sum_probs=195.0
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.....|.++|.+++..+.... .+...+|...+|+|||...+.++...... .+.+||++|. .+..|+.+.+.+.++
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 345679999999998887643 34568999999999999988776655433 3568999997 678999999998774
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC--cccH
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN--PSSV 188 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN--~~s~ 188 (673)
..+.+++|......... . +..+ .....+++|.|+..+.. .-.++.+|||||+|...- ....
T Consensus 216 -~~v~~~~s~~s~~~r~~-~-~~~~---------~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p 278 (679)
T PRK05580 216 -APVAVLHSGLSDGERLD-E-WRKA---------KRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGP 278 (679)
T ss_pred -CCEEEEECCCCHHHHHH-H-HHHH---------HcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCC
Confidence 56777777643322211 1 1111 22346899999877632 123568999999997532 2211
Q ss_pred HH-----HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 189 LY-----NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 189 ~~-----~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
.+ ..++........+++||||...+ ++.... +. |
T Consensus 279 ~y~~r~va~~ra~~~~~~~il~SATps~~s---~~~~~~----g~----------~------------------------ 317 (679)
T PRK05580 279 RYHARDLAVVRAKLENIPVVLGSATPSLES---LANAQQ----GR----------Y------------------------ 317 (679)
T ss_pred CCcHHHHHHHHhhccCCCEEEEcCCCCHHH---HHHHhc----cc----------e------------------------
Confidence 11 12222234456889999995211 111100 00 0
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN 343 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~ 343 (673)
-+-+...... ...+|. .++....... . . .... .-| ..+...+.+...
T Consensus 318 -----~~~~l~~r~~---~~~~p~-v~~id~~~~~-~----~------------~~~~----~ls---~~l~~~i~~~l~ 364 (679)
T PRK05580 318 -----RLLRLTKRAG---GARLPE-VEIIDMRELL-R----G------------ENGS----FLS---PPLLEAIKQRLE 364 (679)
T ss_pred -----eEEEeccccc---cCCCCe-EEEEechhhh-h----h------------cccC----CCC---HHHHHHHHHHHH
Confidence 0000000000 001232 1111110000 0 0 0000 000 112233333334
Q ss_pred CCCeEEEEecC------------------------------------------------------------chHHHHHHH
Q 005858 344 SGHRVLLFAQM------------------------------------------------------------TQTLDILQD 363 (673)
Q Consensus 344 ~g~kvlIFsq~------------------------------------------------------------~~~ld~l~~ 363 (673)
.|+++|||.+. ..-.+.+++
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 55555555321 123567777
Q ss_pred HHHhC--CCcEEEEeCCcC--HHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCC--
Q 005858 364 FLELR--KYSYERLDGSIR--AEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQD-- 437 (673)
Q Consensus 364 ~L~~~--g~~~~~i~G~~~--~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~-- 437 (673)
.|... +.++.++||++. .+++.+++++|. .+..-+|++|+..+.|+|++..+.|+++|.+
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~--------------~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFA--------------RGEADILIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHh--------------cCCCCEEEEChhhccCCCCCCcCEEEEEcCchh
Confidence 77765 789999999986 467899999998 3344567889999999999999999888765
Q ss_pred -CCc---------chHHHHhHhhhccCCcCeEEEEEEec
Q 005858 438 -WNP---------QVDKQALQRAHRIGQMNHVLSINLVT 466 (673)
Q Consensus 438 -wnp---------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~ 466 (673)
..| +.+.|+.||++|.|..-.|.+..+-.
T Consensus 511 l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 511 LFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred ccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 233 67999999999988776676654443
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.69 E-value=1.6e-16 Score=153.69 Aligned_cols=157 Identities=27% Similarity=0.310 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 35 AELKPHQVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.+|+|||.+++.-+...+... ..+++..+||+|||.+++.++..+.. ++||+||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 579999999999998877654 78999999999999999998888853 79999997 788999999988876
Q ss_pred CCeEEEEeCChHHH--------HHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc-------------ccCC
Q 005858 111 KLEVLRYVGEREQR--------RNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-------------LSQI 169 (673)
Q Consensus 111 ~~~v~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-------------l~~~ 169 (673)
.............. ......... ......++++++++.+...... ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSE----------SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHH----------HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhhhhcccccccccccccccccccccccccc----------cccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 54444221110000 000000000 1234578999999999765321 2334
Q ss_pred CccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCC
Q 005858 170 PWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi 210 (673)
.+++||+||||++.+... ++.+.. +...++|+|||||-
T Consensus 146 ~~~~vI~DEaH~~~~~~~--~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDSS--YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp SESEEEEETGGCTHHHHH--HHHHHH-SSCCEEEEEESS-S
T ss_pred cCCEEEEehhhhcCCHHH--HHHHHc-CCCCeEEEEEeCcc
Confidence 689999999999765332 555555 78889999999995
No 87
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=173.23 Aligned_cols=311 Identities=18% Similarity=0.139 Sum_probs=193.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC-CCCe
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT-PKLE 113 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~-p~~~ 113 (673)
+|+|+|..+|.-.+.. +.|++++.+||+|||+.|..++..-...+ .++++.|||. ++..+-.++|.+|- -+++
T Consensus 31 el~~~qq~av~~~~~~---~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccccC---CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 8999999998644333 78999999999999999987665443222 4689999996 78888888888443 3789
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccc--cCCCccEEEEcCCccccCc-c----
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFL--SQIPWCYTIIDEAQRLKNP-S---- 186 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l--~~~~~~~vIvDEaH~~KN~-~---- 186 (673)
|..+.|+...... ....++|+|+|||.+-...... -....++||+||+|.+... -
T Consensus 106 V~~~TgD~~~~~~------------------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 106 VGISTGDYDLDDE------------------RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred EEEecCCcccchh------------------hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 9999998764431 2235799999999884322111 2235689999999999765 1
Q ss_pred -cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 187 -SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 187 -s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
+..++.... ....+.++||||- .|..|+-..+ +.....+...|...+..
T Consensus 168 E~iv~r~~~~-~~~~rivgLSATl--pN~~evA~wL---~a~~~~~~~rp~~l~~~------------------------ 217 (766)
T COG1204 168 ESIVARMRRL-NELIRIVGLSATL--PNAEEVADWL---NAKLVESDWRPVPLRRG------------------------ 217 (766)
T ss_pred hhHHHHHHhh-CcceEEEEEeeec--CCHHHHHHHh---CCcccccCCCCcccccC------------------------
Confidence 223333221 2224678999993 2333333322 22111100000000000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
.|....+ ....... ..........+..++....+.|
T Consensus 218 -------------------v~~~~~~----------------------~~~~~~~---k~~~~~~~~~~~~~v~~~~~~~ 253 (766)
T COG1204 218 -------------------VPYVGAF----------------------LGADGKK---KTWPLLIDNLALELVLESLAEG 253 (766)
T ss_pred -------------------CccceEE----------------------EEecCcc---ccccccchHHHHHHHHHHHhcC
Confidence 0000000 0000000 0011222334556666677889
Q ss_pred CeEEEEecCchHHHHHHHHHHh----C---------------------------------CCcEEEEeCCcCHHHHHHHH
Q 005858 346 HRVLLFAQMTQTLDILQDFLEL----R---------------------------------KYSYERLDGSIRAEERFAAI 388 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~----~---------------------------------g~~~~~i~G~~~~~~R~~~i 388 (673)
+.++||++.+.......+.+.. . ...+...+.+++.++|.-+-
T Consensus 254 ~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE 333 (766)
T COG1204 254 GQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVE 333 (766)
T ss_pred CeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHH
Confidence 9999999988765555555441 0 01234567788999999999
Q ss_pred HhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeE----eeC-----CCCCcchHHHHhHhhhccCCcC
Q 005858 389 RHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVI----FYE-----QDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 389 ~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI----~~D-----~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
+.|+ .+..-+|+||.....|+||++=..|| .|| -+-++....|..||++|.|=..
T Consensus 334 ~~Fr--------------~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 334 DAFR--------------KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred HHHh--------------cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 9998 44556688888999999999633333 455 3446889999999999998543
No 88
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.69 E-value=2.7e-15 Score=180.18 Aligned_cols=283 Identities=14% Similarity=0.156 Sum_probs=176.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKL 112 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~ 112 (673)
...|+|+|..++..++. |...++..++|+|||..++.++..+... ...+|||+|. .++.|+.+.+.+++...
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 45789999998875554 6789999999999998666555544322 3568999997 67799999999887532
Q ss_pred --e---EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc
Q 005858 113 --E---VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 113 --~---v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s 187 (673)
. +..++|........ .....+ ...+++|+|+|+..+......+.. .++++|+||||++-....
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~--~~~~~l---------~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKK--EFMERI---------ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred CCceeeeeeecCCCCHHHHH--HHHHHH---------hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccc
Confidence 2 23466654322211 111111 123589999999999876655554 799999999999854211
Q ss_pred H--------------HHHHHH---------------------hhcCCCc---EEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 005858 188 V--------------LYNVLR---------------------EHFLMPR---RLLMTGTPIQNNLSELWALMHFCMPSVF 229 (673)
Q Consensus 188 ~--------------~~~~l~---------------------~~~~~~~---rllLTGTPi~N~~~El~~ll~~l~p~~~ 229 (673)
. ...++. ...+..+ .++.|||+.+......+ + ...+
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l-----~-r~ll 290 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL-----F-RELL 290 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH-----c-cccc
Confidence 0 111110 0011111 23468885443222100 0 0000
Q ss_pred CChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHH
Q 005858 230 GTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPK 309 (673)
Q Consensus 230 ~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~ 309 (673)
+ |. +.+. ...+....
T Consensus 291 ~--------~~-----------------------------v~~~--------~~~~r~I~-------------------- 305 (1171)
T TIGR01054 291 G--------FE-----------------------------VGGG--------SDTLRNVV-------------------- 305 (1171)
T ss_pred c--------eE-----------------------------ecCc--------cccccceE--------------------
Confidence 0 00 0000 00000000
Q ss_pred HHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCc---hHHHHHHHHHHhCCCcEEEEeCCcCHHHHHH
Q 005858 310 LLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMT---QTLDILQDFLELRKYSYERLDGSIRAEERFA 386 (673)
Q Consensus 310 l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~---~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~ 386 (673)
+... . ...+...|..++..+ +..+|||++.. ..++.|..+|...|+++..++|.++ +.
T Consensus 306 ----------~~~~-~-~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~ 366 (1171)
T TIGR01054 306 ----------DVYV-E-DEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KE 366 (1171)
T ss_pred ----------EEEE-e-cccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HH
Confidence 0000 0 011123445555543 56899999988 8899999999999999999999987 36
Q ss_pred HHHhhccchhHhhhhhhcCCCCcEEEEEe---ccccccccCCCC-CCeeEeeCCCC
Q 005858 387 AIRHFSVQSAIERLYSEAGGNDAFVFMIS---TRAGGVGLNLVA-ADTVIFYEQDW 438 (673)
Q Consensus 387 ~i~~F~~~~~~~~~~~~~~~~~~~vlL~s---t~agg~GiNL~~-a~~VI~~D~~w 438 (673)
.+++|. ++...+++.+ |..++.|||++. .++|||||+|-
T Consensus 367 ~l~~Fr-------------~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 367 DYEKFA-------------EGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHH-------------cCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 899998 5677777776 689999999999 89999999884
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=1.4e-16 Score=145.01 Aligned_cols=120 Identities=29% Similarity=0.426 Sum_probs=109.4
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCC
Q 005858 329 GKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408 (673)
Q Consensus 329 ~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~ 408 (673)
.|...+..++......+.++||||.....++.+.+.|...+.++..++|+++..+|..+++.|++ +
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--------------~ 77 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--------------G 77 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc--------------C
Confidence 68888888888876678999999999999999999999889999999999999999999999983 3
Q ss_pred cEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 409 ~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
...+|++|.++|+|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 78 ~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 78 EIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 367888999999999999999999999999999999999999999998777664
No 90
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=5.5e-17 Score=159.98 Aligned_cols=286 Identities=19% Similarity=0.200 Sum_probs=190.9
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc----cHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS----VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s----ll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~ 133 (673)
.+.-...|+|||-.-+--+..........--.+|++|.. -++|-..++.+++ ++.+.+-.|....+..+-+
T Consensus 125 iLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~R---- 199 (459)
T KOG0326|consen 125 ILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMR---- 199 (459)
T ss_pred hhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceee----
Confidence 334457899999876544433322222222369999963 2388888999888 5888888887766655432
Q ss_pred HHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccccCcccH--HHHHHHhhcCCCcEEEEecCC
Q 005858 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRLKNPSSV--LYNVLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 134 ~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~KN~~s~--~~~~l~~~~~~~~rllLTGTP 209 (673)
-....+++|.|+..+..... .-.-.....+|+|||..+-+.... ..+.+...-+.+..++.|||-
T Consensus 200 -----------l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 200 -----------LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred -----------ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEeccc
Confidence 12235799999987754322 112234678999999998774432 334444322345567889992
Q ss_pred CCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcc
Q 005858 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT 289 (673)
Q Consensus 210 i~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~ 289 (673)
- . +...|...| +++- ..+.-..
T Consensus 269 P-~------------------tVk~Fm~~~---------------------------------l~kP------y~INLM~ 290 (459)
T KOG0326|consen 269 P-L------------------TVKGFMDRH---------------------------------LKKP------YEINLME 290 (459)
T ss_pred c-h------------------hHHHHHHHh---------------------------------ccCc------ceeehhh
Confidence 1 0 112232222 2210 0111111
Q ss_pred cccHHH-HHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC
Q 005858 290 EITVLQ-KKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 290 e~~~~Q-~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
|++..- .++|.- -..+-|+..|..+..++. =...||||+.+...+.|.+.+...
T Consensus 291 eLtl~GvtQyYaf-----------------------V~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITel 345 (459)
T KOG0326|consen 291 ELTLKGVTQYYAF-----------------------VEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITEL 345 (459)
T ss_pred hhhhcchhhheee-----------------------echhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhc
Confidence 121110 111110 112445556666666653 237899999999999999999999
Q ss_pred CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhH
Q 005858 369 KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQ 448 (673)
Q Consensus 369 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~g 448 (673)
||++..++..|.++.|..++.+|. .+....|++|+..-.||+.|+.+.||+||-|-|+..|++|+|
T Consensus 346 GyscyyiHakM~Q~hRNrVFHdFr--------------~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG 411 (459)
T KOG0326|consen 346 GYSCYYIHAKMAQEHRNRVFHDFR--------------NGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 411 (459)
T ss_pred cchhhHHHHHHHHhhhhhhhhhhh--------------ccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHcc
Confidence 999999999999999999999998 444556788999999999999999999999999999999999
Q ss_pred hhhccCCc
Q 005858 449 RAHRIGQM 456 (673)
Q Consensus 449 R~~RiGQ~ 456 (673)
|.+|+|--
T Consensus 412 RsGRFGhl 419 (459)
T KOG0326|consen 412 RSGRFGHL 419 (459)
T ss_pred CCccCCCc
Confidence 99999964
No 91
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=2.9e-15 Score=156.01 Aligned_cols=305 Identities=21% Similarity=0.272 Sum_probs=200.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHH----HhhhcCCCCCCE-EEEECc-ccHHHHHHHHHHHC--CCCeEEEEeCChHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLS----YLKFSQMSPGPF-LVLCPL-SVTDGWVSEMAKFT--PKLEVLRYVGEREQRRN 126 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~----~l~~~~~~~~~~-LIV~P~-sll~~W~~E~~k~~--p~~~v~~~~g~~~~~~~ 126 (673)
++.+|--.-+|+|||-..+.-.. .-.......+|+ ||+||. .+..|...|.++|+ -+++++..+|....-++
T Consensus 260 grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 260 GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQ 339 (731)
T ss_pred cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHH
Confidence 34455556789999986543221 112223345665 677887 67799999999886 35666666655543333
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCcc--cHHHHHHHhhcCC-Cc
Q 005858 127 IRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPS--SVLYNVLREHFLM-PR 201 (673)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~--s~~~~~l~~~~~~-~~ 201 (673)
.... ...+.+||+|++.+... .....-.+..|+|+||+.++-... .+.. .+...+.. +.
T Consensus 340 ~k~L---------------k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVr-SI~~hirpdrQ 403 (731)
T KOG0339|consen 340 SKEL---------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVR-SIKQHIRPDRQ 403 (731)
T ss_pred HHhh---------------hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHH-HHHhhcCCcce
Confidence 2221 13578999999988543 233444567899999999986633 2332 33333443 55
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHH-HHHHHHHhhhhhhhhhhc
Q 005858 202 RLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLK-GILSAFMLRRTKQKLVEC 280 (673)
Q Consensus 202 rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~-~~l~~~~lrr~k~~v~~~ 280 (673)
.|++|+|- .. .+..|. .+|.. -+|++.-+|...
T Consensus 404 tllFsaTf------------------------------~~---------------kIe~lard~L~d-pVrvVqg~vgea 437 (731)
T KOG0339|consen 404 TLLFSATF------------------------------KK---------------KIEKLARDILSD-PVRVVQGEVGEA 437 (731)
T ss_pred EEEeeccc------------------------------hH---------------HHHHHHHHHhcC-CeeEEEeehhcc
Confidence 78899981 11 111111 01100 011111111000
Q ss_pred CCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHH
Q 005858 281 GHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDI 360 (673)
Q Consensus 281 ~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~ 360 (673)
................|+..|..-|......| +||||..-....+.
T Consensus 438 ---------------------------------n~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~ 483 (731)
T KOG0339|consen 438 ---------------------------------NEDITQTVSVCPSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEE 483 (731)
T ss_pred ---------------------------------ccchhheeeeccCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHH
Confidence 00000001111112345666666666554554 99999999999999
Q ss_pred HHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCc
Q 005858 361 LQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNP 440 (673)
Q Consensus 361 l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp 440 (673)
|...|..+|+++..++|++.+.+|.+.+.+|+ .+..-+|+.|+.+..|+++....+||+||.--+-
T Consensus 484 i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fK--------------kk~~~VlvatDvaargldI~~ikTVvnyD~ardI 549 (731)
T KOG0339|consen 484 IAANLKLKGFNVSLLHGDKDQAERNEVLSKFK--------------KKRKPVLVATDVAARGLDIPSIKTVVNYDFARDI 549 (731)
T ss_pred HHHHhccccceeeeecCchhhHHHHHHHHHHh--------------hcCCceEEEeeHhhcCCCccccceeecccccchh
Confidence 99999999999999999999999999999998 4445678889999999999999999999999999
Q ss_pred chHHHHhHhhhccCCcCeEEEEEEecCCCHH
Q 005858 441 QVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471 (673)
Q Consensus 441 ~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiE 471 (673)
..+.|++||.+|-|-+ -..|.||++...+
T Consensus 550 dththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 550 DTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9999999999999986 5578888876443
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.67 E-value=1.2e-14 Score=168.70 Aligned_cols=295 Identities=16% Similarity=0.052 Sum_probs=179.0
Q ss_pred HHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHHHCC---CCeEEEEeCChHH
Q 005858 48 LIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAKFTP---KLEVLRYVGEREQ 123 (673)
Q Consensus 48 l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k~~p---~~~v~~~~g~~~~ 123 (673)
+++....+..+|+..++|+|||.+..-++.... ...+.++|+.|.-++ .+..+.+.+... +..+....+...
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~---~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP---GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh---ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 344445578999999999999999887665432 123568999998543 555555543331 222221111110
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc-cccCCCccEEEEcCCcc-ccCcccH--HHHHHHhhc-C
Q 005858 124 RRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG-FLSQIPWCYTIIDEAQR-LKNPSSV--LYNVLREHF-L 198 (673)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~-~l~~~~~~~vIvDEaH~-~KN~~s~--~~~~l~~~~-~ 198 (673)
......+++++|.+.+..... ...-.++++||+||+|. .-+..-. ..+.+...+ .
T Consensus 86 --------------------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~ 145 (819)
T TIGR01970 86 --------------------KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE 145 (819)
T ss_pred --------------------ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC
Confidence 011235799999998865432 22234678999999994 5443321 122222223 2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHhC-CCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 005858 199 MPRRLLMTGTPIQNNLSELWALMHFCM-PSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKL 277 (673)
Q Consensus 199 ~~~rllLTGTPi~N~~~El~~ll~~l~-p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v 277 (673)
..+.++||||.-...+ -.|+. +.. +. ..
T Consensus 146 dlqlIlmSATl~~~~l------~~~l~~~~v--------------I~-~~------------------------------ 174 (819)
T TIGR01970 146 DLKILAMSATLDGERL------SSLLPDAPV--------------VE-SE------------------------------ 174 (819)
T ss_pred CceEEEEeCCCCHHHH------HHHcCCCcE--------------EE-ec------------------------------
Confidence 3456899999642211 11221 000 00 00
Q ss_pred hhcCCccCCCcccccH-HHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCch
Q 005858 278 VECGHLMLPPLTEITV-LQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQ 356 (673)
Q Consensus 278 ~~~~~~~lp~~~e~~~-~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~ 356 (673)
....|......+ .....+.. .....+..++. ..+.++|||+....
T Consensus 175 ----gr~~pVe~~y~~~~~~~~~~~---------------------------~v~~~l~~~l~---~~~g~iLVFlpg~~ 220 (819)
T TIGR01970 175 ----GRSFPVEIRYLPLRGDQRLED---------------------------AVSRAVEHALA---SETGSILVFLPGQA 220 (819)
T ss_pred ----CcceeeeeEEeecchhhhHHH---------------------------HHHHHHHHHHH---hcCCcEEEEECCHH
Confidence 000000000000 00000000 00011222222 34568999999999
Q ss_pred HHHHHHHHHHh---CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe
Q 005858 357 TLDILQDFLEL---RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF 433 (673)
Q Consensus 357 ~ld~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~ 433 (673)
..+.+...|.. .++.++.++|+++.++|.++++.|. ++..-+|++|..+.+||++.++++||.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~--------------~G~rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDP--------------QGRRKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcc--------------cCCeEEEEecchHhhcccccCceEEEE
Confidence 99999999986 4788999999999999999999997 556678899999999999999999999
Q ss_pred eCCC----CCcch--------------HHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 434 YEQD----WNPQV--------------DKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 434 ~D~~----wnp~~--------------~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++.+ |||.. +.||.||++|. ++=..|+|+++.
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 9875 55554 78999999996 466678888754
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.66 E-value=3.6e-14 Score=164.83 Aligned_cols=343 Identities=16% Similarity=0.104 Sum_probs=188.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH----H
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK----F 108 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k----~ 108 (673)
...++|+|..+..- ...++-.||-.+||.|||-.++.++..+...+.. ..+++..|. .+..+-...+.+ .
T Consensus 284 ~~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~-~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLA-DSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCC-CeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 45799999976321 1234568999999999999999988877654443 447888897 455666666554 4
Q ss_pred CCCCeEEEEeCChHHHHHHHHHHHHH----------H--HhhhccCCCCCCCCCEEEecHHHHHhcccc-----cc--CC
Q 005858 109 TPKLEVLRYVGEREQRRNIRRTMYEH----------V--KEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-----LS--QI 169 (673)
Q Consensus 109 ~p~~~v~~~~g~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-----l~--~~ 169 (673)
++...+...||............... . ............-.+++|+|.+++....-. +. .+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 45566777777654222111100000 0 000000011112358999999988643211 11 12
Q ss_pred CccEEEEcCCccccCcccHHHHHHHhhc--CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCC
Q 005858 170 PWCYTIIDEAQRLKNPSSVLYNVLREHF--LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSS 247 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~s~~~~~l~~~~--~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~ 247 (673)
.-.+|||||+|-+-...+..-..+...+ .....++||||+-..-..+|.. .|....
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~------------------a~~~~~---- 496 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLD------------------TYGGHD---- 496 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHH------------------Hhcccc----
Confidence 2358999999988433222222222212 2245899999973221111111 110000
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcc--ccccccccc-
Q 005858 248 APKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSS--RTANHQSLQ- 324 (673)
Q Consensus 248 ~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~--~~~~~~~l~- 324 (673)
.+... ...|-......... ..+. +..... .......+.
T Consensus 497 ----------------------------~~~~~--~~YPlvt~~~~~~~--------~~~~-~~~~~~~~~~~~~v~v~~ 537 (878)
T PRK09694 497 ----------------------------PVELS--SAYPLITWRGVNGA--------QRFD-LSAHPEQLPARFTIQLEP 537 (878)
T ss_pred ----------------------------ccccc--cccccccccccccc--------eeee-ccccccccCcceEEEEEe
Confidence 00000 00010000000000 0000 000000 000000000
Q ss_pred ---cccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCC---CcEEEEeCCcCHHHH----HHHHHhhccc
Q 005858 325 ---NTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRK---YSYERLDGSIRAEER----FAAIRHFSVQ 394 (673)
Q Consensus 325 ---~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g---~~~~~i~G~~~~~~R----~~~i~~F~~~ 394 (673)
........++..++.. ...|.+++|||+.+..+..+.+.|...+ .++..++|.++..+| .++++.|...
T Consensus 538 ~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~ 616 (878)
T PRK09694 538 ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKN 616 (878)
T ss_pred eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 0001122334444443 3578899999999999999999998764 679999999999988 4567888422
Q ss_pred hhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 395 SAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 395 ~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
. ......+|++|++...|||+ .+|.+|....| ...+.||+||++|.|..
T Consensus 617 g----------~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 617 G----------KRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred C----------CcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 0 11124678999999999999 57888876665 56899999999999864
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=2.8e-14 Score=158.65 Aligned_cols=296 Identities=17% Similarity=0.142 Sum_probs=178.5
Q ss_pred EECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhh
Q 005858 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQ 138 (673)
Q Consensus 60 Lade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 138 (673)
|..+||+|||.+.+.++...... .+.+||++|. ++..|+.+.|++.++ ..+.++++......... .+..+
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~--~~~~~--- 72 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQ--AWRKV--- 72 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHH--HHHHH---
Confidence 55689999999998877665433 3468999997 688999999988773 45667777543322211 11111
Q ss_pred hccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcccc--CcccHH-----HHHHHhhcCCCcEEEEecCCCC
Q 005858 139 SQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLK--NPSSVL-----YNVLREHFLMPRRLLMTGTPIQ 211 (673)
Q Consensus 139 ~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~K--N~~s~~-----~~~l~~~~~~~~rllLTGTPi~ 211 (673)
.....++||+|+..+.. .-.++++|||||.|... ...... ...++........+++||||..
T Consensus 73 ------~~g~~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 73 ------KNGEILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred ------HcCCCCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 22346899999987742 22356999999999853 222211 1223333455678999999962
Q ss_pred CCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHh-hhhhhhhhhcCCccCCCccc
Q 005858 212 NNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML-RRTKQKLVECGHLMLPPLTE 290 (673)
Q Consensus 212 N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l-rr~k~~v~~~~~~~lp~~~e 290 (673)
..++...+ +. +....+ +|... ..+|. .+
T Consensus 142 ---es~~~~~~----g~------------------------------------~~~~~l~~r~~~-------~~~p~-v~ 170 (505)
T TIGR00595 142 ---ESYHNAKQ----KA------------------------------------YRLLVLTRRVSG-------RKPPE-VK 170 (505)
T ss_pred ---HHHHHHhc----CC------------------------------------eEEeechhhhcC-------CCCCe-EE
Confidence 11111100 00 000000 00000 01221 11
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCch--------------
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQ-------------- 356 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~-------------- 356 (673)
+...... . . .+.--..+.+.+.+..+.|+++|||.+...
T Consensus 171 vid~~~~---------~----------~--------~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 171 LIDMRKE---------P----------R--------QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred EEecccc---------c----------c--------cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 1110000 0 0 000001244555555677888888843211
Q ss_pred ----------------------------------------------HHHHHHHHHHhC--CCcEEEEeCCcCHHHH--HH
Q 005858 357 ----------------------------------------------TLDILQDFLELR--KYSYERLDGSIRAEER--FA 386 (673)
Q Consensus 357 ----------------------------------------------~ld~l~~~L~~~--g~~~~~i~G~~~~~~R--~~ 386 (673)
-.+.+++.|... +.++.++|+.++..++ .+
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 147777777765 7899999999876555 88
Q ss_pred HHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCC---Cc---------chHHHHhHhhhccC
Q 005858 387 AIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDW---NP---------QVDKQALQRAHRIG 454 (673)
Q Consensus 387 ~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~w---np---------~~~~Qa~gR~~RiG 454 (673)
+++.|. .+..-+|++|+..+.|+|+..++.|+++|.+- .| +.+.|+.||++|.+
T Consensus 304 ~l~~f~--------------~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 304 LLNQFA--------------NGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred HHHHHh--------------cCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC
Confidence 999998 34445678899999999999999998776652 23 67899999999988
Q ss_pred CcCeEEEEEEecC
Q 005858 455 QMNHVLSINLVTE 467 (673)
Q Consensus 455 Q~k~V~Vy~lv~~ 467 (673)
..-.|.+..+-..
T Consensus 370 ~~g~viiqt~~p~ 382 (505)
T TIGR00595 370 DPGQVIIQTYNPN 382 (505)
T ss_pred CCCEEEEEeCCCC
Confidence 7666665544333
No 95
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=6.2e-16 Score=169.28 Aligned_cols=171 Identities=18% Similarity=0.184 Sum_probs=107.1
Q ss_pred cCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 29 AEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 29 ~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
.|..-..+|||||..|+.-..+.+..+-+|=|-+.+|+|||.+++-+...+.. ..+|.++|. ++++|--+|+..
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhh
Confidence 35566788999999999999998888888889999999999999999888852 568999997 778776555532
Q ss_pred HC-CCCeEE-EEeCChHHHH--H------------HHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCC
Q 005858 108 FT-PKLEVL-RYVGEREQRR--N------------IRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQI 169 (673)
Q Consensus 108 ~~-p~~~v~-~~~g~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~ 169 (673)
-. -.++.. ++..++-.+. . ..+.+...+... ....+.-||.+||+.+..... ...--
T Consensus 229 ~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~-----~k~~~~~vvFsTYQSl~~i~eAQe~G~~ 303 (1518)
T COG4889 229 QKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHR-----QKANGLTVVFSTYQSLPRIKEAQEAGLD 303 (1518)
T ss_pred ccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHh-----hccCCcEEEEEcccchHHHHHHHHcCCC
Confidence 21 122222 2221111110 0 001111111111 134456799999998865432 22334
Q ss_pred CccEEEEcCCccccCc------ccHHHHHH-HhhcCCCcEEEEecCC
Q 005858 170 PWCYTIIDEAQRLKNP------SSVLYNVL-REHFLMPRRLLMTGTP 209 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~------~s~~~~~l-~~~~~~~~rllLTGTP 209 (673)
+||+||||||||--.. .|..+++- ...+++..|+.|||||
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 6899999999996331 11111110 0124567799999999
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.65 E-value=1.2e-14 Score=178.19 Aligned_cols=294 Identities=14% Similarity=0.213 Sum_probs=179.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC---
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--- 110 (673)
.+++|.|..++..++. |...++..+||+|||+..+.++..+.. ....+|||+|+ .++.|..+.+..++.
T Consensus 78 ~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~ 150 (1638)
T PRK14701 78 FEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEKAN 150 (1638)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhhcC
Confidence 3689999999876665 578999999999999943333322211 23358999997 677999999988764
Q ss_pred -CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc--
Q 005858 111 -KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS-- 187 (673)
Q Consensus 111 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s-- 187 (673)
+..+..++|......... ....+ ....++++|+|++.+......+....++++||||||.+-..+-
T Consensus 151 ~~v~v~~~~g~~s~~e~~~--~~~~l---------~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~kni 219 (1638)
T PRK14701 151 LDVRLVYYHSNLRKKEKEE--FLERI---------ENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNI 219 (1638)
T ss_pred CceeEEEEeCCCCHHHHHH--HHHHH---------hcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccccccc
Confidence 356666777654333211 11111 2235799999999886654433346789999999999743110
Q ss_pred -----------HHHH----HHH------------------h---hcCCCc--EEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 005858 188 -----------VLYN----VLR------------------E---HFLMPR--RLLMTGTPIQNNLSELWALMHFCMPSVF 229 (673)
Q Consensus 188 -----------~~~~----~l~------------------~---~~~~~~--rllLTGTPi~N~~~El~~ll~~l~p~~~ 229 (673)
...+ .+. . .++... .++.|||.-.. .+.-.
T Consensus 220 d~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~---------- 287 (1638)
T PRK14701 220 DRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVK---------- 287 (1638)
T ss_pred chhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHH----------
Confidence 0100 000 0 001111 12344443211 00000
Q ss_pred CChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHH
Q 005858 230 GTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPK 309 (673)
Q Consensus 230 ~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~ 309 (673)
+++..+
T Consensus 288 --------------------------------------------------------------------l~~~~l------ 293 (1638)
T PRK14701 288 --------------------------------------------------------------------LYRELL------ 293 (1638)
T ss_pred --------------------------------------------------------------------HhhcCe------
Confidence 000000
Q ss_pred HHhhcccccccccccc-------ccCCcHHHHHHHHHHHHhCCCeEEEEecCchH---HHHHHHHHHhCCCcEEEEeCCc
Q 005858 310 LLALSSRTANHQSLQN-------TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQT---LDILQDFLELRKYSYERLDGSI 379 (673)
Q Consensus 310 l~~~~~~~~~~~~l~~-------~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~---ld~l~~~L~~~g~~~~~i~G~~ 379 (673)
...... ..+.+.+ ........|..++.. .|...||||+.... ++.+..+|...|+++..++|.
T Consensus 294 --~f~v~~-~~~~lr~i~~~yi~~~~~~k~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 294 --GFEVGS-GRSALRNIVDVYLNPEKIIKEHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred --EEEecC-CCCCCCCcEEEEEECCHHHHHHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 000000 0000000 011111234455544 36789999987654 589999999999999999984
Q ss_pred CHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEec---cccccccCCCC-CCeeEeeCCCC---CcchHHHH------
Q 005858 380 RAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST---RAGGVGLNLVA-ADTVIFYEQDW---NPQVDKQA------ 446 (673)
Q Consensus 380 ~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st---~agg~GiNL~~-a~~VI~~D~~w---np~~~~Qa------ 446 (673)
|...+++|. .++..|++.+. ..++.|||++. ..+|||||.|- +...+.|.
T Consensus 367 ----R~~~l~~F~-------------~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~ 429 (1638)
T PRK14701 367 ----NKKGFDLFE-------------EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILG 429 (1638)
T ss_pred ----HHHHHHHHH-------------cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhc
Confidence 889999999 55666666553 57889999998 99999999997 55555554
Q ss_pred -------hHhhhccCCc
Q 005858 447 -------LQRAHRIGQM 456 (673)
Q Consensus 447 -------~gR~~RiGQ~ 456 (673)
.||+.|-|..
T Consensus 430 ~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 430 LLSEILKIEEELKEGIP 446 (1638)
T ss_pred chHHHHHhhhhcccCCc
Confidence 4999998864
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.64 E-value=6.8e-14 Score=161.29 Aligned_cols=313 Identities=19% Similarity=0.223 Sum_probs=208.4
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAK 107 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k 107 (673)
..+.++..|-|..+++-+.+-+.++. .-+||.++|.|||=+|+-++-.- .. ..+-+.|+||+.++ .|-.+.|..
T Consensus 589 ~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~--~GKQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 589 ASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VM--DGKQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-hc--CCCeEEEEcccHHhHHHHHHHHHH
Confidence 56778889999999999998887765 45999999999999988544222 12 23668999999877 556666654
Q ss_pred HCCCCeEEEEe----CChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcccc
Q 005858 108 FTPKLEVLRYV----GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLK 183 (673)
Q Consensus 108 ~~p~~~v~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~K 183 (673)
-+-++.|-+-. -+......+. +.+ ..+..|+||-||..+.++..+. +..+|||||=||+.
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~~il----~~l---------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFG 729 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQKEIL----KGL---------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFG 729 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHHHHH----HHH---------hcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcC
Confidence 44344443322 2222222222 222 4557899999999998776653 45799999999985
Q ss_pred CcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 184 NPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 184 N~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
=..- ..++.+-....+|-||||||+..+. |.+..-
T Consensus 730 Vk~K---EkLK~Lr~~VDvLTLSATPIPRTL~-----Msm~Gi------------------------------------- 764 (1139)
T COG1197 730 VKHK---EKLKELRANVDVLTLSATPIPRTLN-----MSLSGI------------------------------------- 764 (1139)
T ss_pred ccHH---HHHHHHhccCcEEEeeCCCCcchHH-----HHHhcc-------------------------------------
Confidence 4332 3344433456789999999987654 111100
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHH-HHHHHH
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDL-LLKKLY 342 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~-ll~~~~ 342 (673)
| |+ ..+.-||...+.+. ..... .. -.++.+ +++++
T Consensus 765 -------R----dl---SvI~TPP~~R~pV~--------------------T~V~~--------~d-~~~ireAI~REl- 800 (1139)
T COG1197 765 -------R----DL---SVIATPPEDRLPVK--------------------TFVSE--------YD-DLLIREAILREL- 800 (1139)
T ss_pred -------h----hh---hhccCCCCCCcceE--------------------EEEec--------CC-hHHHHHHHHHHH-
Confidence 0 00 01123443222110 00000 00 012333 33333
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
.+|.+|....+.+..+..+...|+.. ...+...||.|+..+-..++..|. .+.+-+|+||....
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~--------------~g~~dVLv~TTIIE 866 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY--------------NGEYDVLVCTTIIE 866 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH--------------cCCCCEEEEeeeee
Confidence 56778888888888888888888765 445888899999999999999998 44455677777999
Q ss_pred cccCCCCCCeeEeeCCC-CCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 421 VGLNLVAADTVIFYEQD-WNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
.|||+++|||+|+-+.+ +--+++-|--||++|-+. .-+.|.++..
T Consensus 867 tGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 867 TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred cCcCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 99999999999998877 788999999999999543 3455555543
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7.4e-14 Score=159.18 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=105.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..++.+.+..+...|..|||||.+....+.|.++|...|+++..++|.....+|..+.+.|+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~-------------- 491 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGR-------------- 491 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCC--------------
Confidence 456888888888888999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEeccccccccCCC--------------------------------------CCCeeEeeCCCCCcchHHHHhH
Q 005858 407 NDAFVFMISTRAGGVGLNLV--------------------------------------AADTVIFYEQDWNPQVDKQALQ 448 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~--------------------------------------~a~~VI~~D~~wnp~~~~Qa~g 448 (673)
.+ .++++|..+|.|+|+. +.=+||.-+.+-|-..+.|..|
T Consensus 492 ~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrG 569 (896)
T PRK13104 492 PG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRG 569 (896)
T ss_pred CC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcc
Confidence 22 3889999999999965 2347888899999999999999
Q ss_pred hhhccCCcCeEEEE
Q 005858 449 RAHRIGQMNHVLSI 462 (673)
Q Consensus 449 R~~RiGQ~k~V~Vy 462 (673)
|++|+|..=....|
T Consensus 570 RaGRQGDPGss~f~ 583 (896)
T PRK13104 570 RAGRQGDPGSSRFY 583 (896)
T ss_pred ccccCCCCCceEEE
Confidence 99999986544443
No 99
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.62 E-value=4.3e-15 Score=157.01 Aligned_cols=317 Identities=22% Similarity=0.222 Sum_probs=206.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHH-HHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCC--
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQA-ISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTP-- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~a-i~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p-- 110 (673)
-+|.|-|.-+|.- -...|.+-++...+++|||+++ ++-+..+. ...+.+|.++|.- +..|=.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 4688999888753 3334778899999999999975 34444332 2356799999984 55666677876653
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc-ccCCCccEEEEcCCccccCc--cc
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-LSQIPWCYTIIDEAQRLKNP--SS 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-l~~~~~~~vIvDEaH~~KN~--~s 187 (673)
.+++.+-.|....+.. . .........+.|+++-||+-+-..... -.--+...||+||.|.+... ..
T Consensus 289 glkvairVG~srIk~~--~---------~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~ 357 (830)
T COG1202 289 GLKVAIRVGMSRIKTR--E---------EPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGP 357 (830)
T ss_pred cceEEEEechhhhccc--C---------CccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhccc
Confidence 3455445554422110 0 001123456789999999976322111 11224579999999999762 22
Q ss_pred H---HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 188 V---LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 188 ~---~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
+ +...++..++....+.||||- .|+.|+...+.. .
T Consensus 358 RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a------------------~---------------------- 395 (830)
T COG1202 358 RLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGA------------------K---------------------- 395 (830)
T ss_pred chhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCC------------------e----------------------
Confidence 2 334455555667889999993 455555543321 0
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh-
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN- 343 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~- 343 (673)
+.... ..|...| .|..+....+.|...+..+.+.-..
T Consensus 396 ------------lV~y~--~RPVplE----------------------------rHlvf~~~e~eK~~ii~~L~k~E~~~ 433 (830)
T COG1202 396 ------------LVLYD--ERPVPLE----------------------------RHLVFARNESEKWDIIARLVKREFST 433 (830)
T ss_pred ------------eEeec--CCCCChh----------------------------HeeeeecCchHHHHHHHHHHHHHHhh
Confidence 00000 0111000 0111111233444455555543321
Q ss_pred ---C--CCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccc
Q 005858 344 ---S--GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRA 418 (673)
Q Consensus 344 ---~--g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~a 418 (673)
. ..+.|||+.++.-...|.++|..+|++..-+|++++-.+|..+-..|. ......+++|.|
T Consensus 434 ~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~--------------~q~l~~VVTTAA 499 (830)
T COG1202 434 ESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA--------------AQELAAVVTTAA 499 (830)
T ss_pred hhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh--------------cCCcceEeehhh
Confidence 1 247999999999999999999999999999999999999999999998 455667899999
Q ss_pred cccccCCCCCCeeEe----eCCCC-CcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 419 GGVGLNLVAADTVIF----YEQDW-NPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 419 gg~GiNL~~a~~VI~----~D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
.|.|+|+++. .||| +...| +|+.+.|..||++|.+=...-.||-++-.
T Consensus 500 L~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 500 LAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999864 4443 34455 99999999999999997666667777654
No 100
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.62 E-value=3.5e-14 Score=165.24 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=92.1
Q ss_pred CCCeEEEEecCchHHHHHHHHHHh---CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLEL---RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
.+..+|||+.....++.+.+.|.. .++.+..++|+++.++|.+++..|. ++..-+|++|..+.
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~--------------~G~rkVlvATnIAE 276 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP--------------AGRRKVVLATNIAE 276 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc--------------CCCeEEEEecchHH
Confidence 467899999999999999999986 5788999999999999999999997 55678899999999
Q ss_pred cccCCCCCCeeEeeCCC----CCc--------------chHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 421 VGLNLVAADTVIFYEQD----WNP--------------QVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~----wnp--------------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
+||++.++++||.++.+ |+| +.+.||.||++|. .+=.+|+|+++.
T Consensus 277 rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 277 TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH
Confidence 99999999999997765 333 3578999999886 467788888754
No 101
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=5.5e-14 Score=159.44 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=100.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..+|...+......|..|||||.+....+.|...|...|+++..++|.....++.-+...++
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~-------------- 487 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ-------------- 487 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC--------------
Confidence 345778888888888889999999999999999999999999999999999987666655555554
Q ss_pred CCcEEEEEeccccccccCCC---CCC-----eeEeeCCCCCcchHHHHhHhhhccCCcCeE
Q 005858 407 NDAFVFMISTRAGGVGLNLV---AAD-----TVIFYEQDWNPQVDKQALQRAHRIGQMNHV 459 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~---~a~-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 459 (673)
...++++|..+|.|+|+. .+. +||.++.|-|...+.|+.||++|.|..=..
T Consensus 488 --~g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 488 --RGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred --CceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 223889999999999985 566 999999999999999999999999986443
No 102
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=8.4e-15 Score=156.25 Aligned_cols=315 Identities=19% Similarity=0.189 Sum_probs=199.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcC----CCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQ----MSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~----~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.+.|-|..++..++.. ..++-+.++|.|||+.-+.-+ ..++... ...-..+|+.|. .+..|-.+|+.+..
T Consensus 158 ~Pt~iq~~aipvfl~~----r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEK----RDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhcc----cceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 4567888888777665 789999999999998765443 3333222 223347999996 77899999999887
Q ss_pred --CCC--eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc----ccCCCccEEEEcCCcc
Q 005858 110 --PKL--EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF----LSQIPWCYTIIDEAQR 181 (673)
Q Consensus 110 --p~~--~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~----l~~~~~~~vIvDEaH~ 181 (673)
+.. .+..+..+....... . ......+++++.|+..+...... +.-....++|+|||.+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~-a-------------~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKP-A-------------FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred CCCCCchhhhhcccccchhhcc-c-------------hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 322 222222221111100 0 00122478999999887665443 3445667899999999
Q ss_pred ccCccc---HHHHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHH
Q 005858 182 LKNPSS---VLYNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQ 257 (673)
Q Consensus 182 ~KN~~s---~~~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 257 (673)
+.++.. +....+..+. +..++=++|+|- ...
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~---------------------------------------------~~~ 334 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSATI---------------------------------------------SVY 334 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhccc---------------------------------------------cHH
Confidence 988721 2222222211 112222344441 001
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 005858 258 FTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 258 ~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
++++..++....++.... +-+..-.++.|..+| .-...+|+.++.++
T Consensus 335 VEE~~~~i~~~~~~vivg---------~~~sa~~~V~QelvF------------------------~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 335 VEEWAELIKSDLKRVIVG---------LRNSANETVDQELVF------------------------CGSEKGKLLALRQL 381 (593)
T ss_pred HHHHHHHhhccceeEEEe---------cchhHhhhhhhhhee------------------------eecchhHHHHHHHH
Confidence 122222222221111110 000000111121111 01135677777777
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHH-HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEec
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFL-ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST 416 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L-~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st 416 (673)
+..- -.-.+|||.|.......|...| ...++.+..|+|..++.+|...+++|+ -+..-+|++|
T Consensus 382 v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--------------~g~IwvLicT 445 (593)
T KOG0344|consen 382 VASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR--------------IGKIWVLICT 445 (593)
T ss_pred Hhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh--------------ccCeeEEEeh
Confidence 7764 3458999999999999999999 778999999999999999999999999 3444568899
Q ss_pred cccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcC-eEEEE
Q 005858 417 RAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMN-HVLSI 462 (673)
Q Consensus 417 ~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~Vy 462 (673)
...+.||++.+++.||+||.|-.-..|..++||.+|.|+.- .+..|
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 99999999999999999999999999999999999999864 34443
No 103
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.1e-14 Score=146.85 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
..|+.+|..+..- ..- ...||||+...+...|...|...|+.+..++|.+..++|.+++++|+ .
T Consensus 315 ~~K~~~l~~lyg~-~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr--------------~ 378 (477)
T KOG0332|consen 315 DDKYQALVNLYGL-LTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR--------------E 378 (477)
T ss_pred hhHHHHHHHHHhh-hhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh--------------c
Confidence 3456666664433 233 36799999999999999999999999999999999999999999998 5
Q ss_pred CcEEEEEeccccccccCCCCCCeeEeeCCCC------CcchHHHHhHhhhccCCc
Q 005858 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQDW------NPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~a~~VI~~D~~w------np~~~~Qa~gR~~RiGQ~ 456 (673)
+..-+|++|.+.+.||+.+..+.||+||+|- +|..|++|+||++|+|.+
T Consensus 379 g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 379 GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 5667799999999999999999999999885 688999999999999964
No 104
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.60 E-value=3.1e-14 Score=149.92 Aligned_cols=348 Identities=18% Similarity=0.205 Sum_probs=208.5
Q ss_pred CCeEEECCCcchHHHHH-HHHHHHhhhcC-----------CCCC-CEEEEECc-ccHHHHHHHHHHHC--CCCeEEEEeC
Q 005858 56 VNVLLGDEMGLGKTLQA-ISFLSYLKFSQ-----------MSPG-PFLVLCPL-SVTDGWVSEMAKFT--PKLEVLRYVG 119 (673)
Q Consensus 56 ~~~iLade~GlGKTl~a-i~~i~~l~~~~-----------~~~~-~~LIV~P~-sll~~W~~E~~k~~--p~~~v~~~~g 119 (673)
...+=|.++|+|||+.- |-++..+...+ ...+ -.|||+|+ .+..|..+-|...+ +.+++..+.|
T Consensus 220 ~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G 299 (731)
T KOG0347|consen 220 VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG 299 (731)
T ss_pred hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeec
Confidence 35677889999999963 33343222111 0112 26999998 56678877777665 5788888888
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc----ccccCC-CccEEEEcCCccccC--cccHHHHH
Q 005858 120 EREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ----GFLSQI-PWCYTIIDEAQRLKN--PSSVLYNV 192 (673)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~----~~l~~~-~~~~vIvDEaH~~KN--~~s~~~~~ 192 (673)
.-....+.|. .. ..++|||.|++.|-... -++.++ ...++|+||+.|+-- .-..+++.
T Consensus 300 GLavqKQqRl--L~-------------~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~l 364 (731)
T KOG0347|consen 300 GLAVQKQQRL--LN-------------QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKL 364 (731)
T ss_pred hhHHHHHHHH--Hh-------------cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHH
Confidence 7654443322 11 13799999999874321 123222 357999999999843 23344444
Q ss_pred HHhhc-----CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 193 LREHF-----LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 193 l~~~~-----~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
+.... ..+..+++|||-- +.....+ ...-.. .....+.-..+..+++.
T Consensus 365 L~~L~e~~~~~qrQTlVFSATlt------------~~~~~~~------~~~~k~---------~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 365 LKHLNEEQKNRQRQTLVFSATLT------------LVLQQPL------SSSRKK---------KDKEDELNAKIQHLMKK 417 (731)
T ss_pred HHHhhhhhcccccceEEEEEEee------------hhhcChh------HHhhhc---------cchhhhhhHHHHHHHHH
Confidence 44311 1234689999931 1100000 000000 00001112223333333
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCe
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~k 347 (673)
+-+| .-|....+++.+.. -..+.+. ++.-... ..... |-.+|. .-..+
T Consensus 418 ig~~------------~kpkiiD~t~q~~t-a~~l~Es----~I~C~~~-eKD~y-----------lyYfl~---ryPGr 465 (731)
T KOG0347|consen 418 IGFR------------GKPKIIDLTPQSAT-ASTLTES----LIECPPL-EKDLY-----------LYYFLT---RYPGR 465 (731)
T ss_pred hCcc------------CCCeeEecCcchhH-HHHHHHH----hhcCCcc-cccee-----------EEEEEe---ecCCc
Confidence 2222 12222333332221 1111111 0000000 00000 001111 12358
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
.||||+.......|.-+|..-+++...++.+|.+++|.+.+++|.+ ....+|++|++++.||++++
T Consensus 466 TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~--------------~~~~VLiaTDVAARGLDIp~ 531 (731)
T KOG0347|consen 466 TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQ--------------SPSGVLIATDVAARGLDIPG 531 (731)
T ss_pred eEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhc--------------CCCeEEEeehhhhccCCCCC
Confidence 9999999999999999999999999999999999999999999994 34578999999999999999
Q ss_pred CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEec--------------------CCCHHHHHHHHHHHHHHHHhH
Q 005858 428 ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT--------------------EHTVEEVIMRRAERKLRLSHN 487 (673)
Q Consensus 428 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~--------------------~~TiEe~i~~~~~~K~~l~~~ 487 (673)
..|||||..|-+...|.+|-||..|.+.. .|.|...-. --.|++.++..+..+.+|+..
T Consensus 532 V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~e 610 (731)
T KOG0347|consen 532 VQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLARE 610 (731)
T ss_pred cceEEEeecCCccceeEecccccccccCC-CeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998752 222211100 023688889888888888877
Q ss_pred hcCCc
Q 005858 488 VVGDD 492 (673)
Q Consensus 488 vi~~~ 492 (673)
+-..+
T Consensus 611 i~~~e 615 (731)
T KOG0347|consen 611 IDKLE 615 (731)
T ss_pred HHHhh
Confidence 66543
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=2.5e-13 Score=154.80 Aligned_cols=369 Identities=18% Similarity=0.153 Sum_probs=216.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-H---HHHHHHHHH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-D---GWVSEMAKF 108 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~---~W~~E~~k~ 108 (673)
++..+++-|+-|.--| +.|.|.-..||.|||++++..+......+ +.+-||+|+..+ . +|...+-++
T Consensus 78 lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G---~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG---KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4455778888876322 24678889999999998776553222222 346799998655 3 355555444
Q ss_pred CCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---------ccccCCCccEEEEcCC
Q 005858 109 TPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---------GFLSQIPWCYTIIDEA 179 (673)
Q Consensus 109 ~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---------~~l~~~~~~~vIvDEa 179 (673)
. ++++.+..|.......... ..++|++.|+..+.-|. ..+...++.++||||+
T Consensus 149 L-Glsv~~i~~~~~~~er~~~-----------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEa 210 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREA-----------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEV 210 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHh-----------------cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEech
Confidence 4 6777777765443322111 12689999998884321 1133457899999999
Q ss_pred ccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCC--h---------------HHHHHHhhhh
Q 005858 180 QRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGT--L---------------NQFLSTFKDA 242 (673)
Q Consensus 180 H~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~--~---------------~~f~~~f~~~ 242 (673)
..+-= -.++..+++||.+- ...++|..++-+-+..-.. + ....+.+...
T Consensus 211 DsiLI------------DeArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~ 276 (830)
T PRK12904 211 DSILI------------DEARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI 276 (830)
T ss_pred hhhee------------ccCCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC
Confidence 97521 12334577887653 2245665554332221110 0 0111111111
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHHH-HhhhhhhhhhhcCCcc---------CCCcc---------------cccH----
Q 005858 243 VHSSSAPKRGKIKEQFTSLKGILSAF-MLRRTKQKLVECGHLM---------LPPLT---------------EITV---- 293 (673)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~~l~~~-~lrr~k~~v~~~~~~~---------lp~~~---------------e~~~---- 293 (673)
...+. .........+...++.. ++.+.++.+...+.+. +|... ++++
T Consensus 277 ~~ly~----~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t 352 (830)
T PRK12904 277 ENLYD----PENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQT 352 (830)
T ss_pred ccccC----hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCcee
Confidence 00000 00111233344444433 4455555444322111 11100 0000
Q ss_pred -----HHH--HHHHHHH---------hhhHHHHHhhc--ccccccccc--------ccccCCcHHHHHHHHHHHHhCCCe
Q 005858 294 -----LQK--KVYASIL---------RKELPKLLALS--SRTANHQSL--------QNTASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 294 -----~Q~--~~y~~~l---------~~~~~~l~~~~--~~~~~~~~l--------~~~~s~Kl~~l~~ll~~~~~~g~k 347 (673)
.|. ..|..+. ..++..+.... ..+.+.|.. ......|..++...+..+...|..
T Consensus 353 ~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grp 432 (830)
T PRK12904 353 LASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQP 432 (830)
T ss_pred eeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCC
Confidence 111 1111110 00011111100 011111111 112456888899989888889999
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
|||||......+.|...|...|+++..++|. ..+|.+.+..|. ++...++++|..+|.|+|+.-
T Consensus 433 VLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~A--------------g~~g~VtIATNmAGRGtDI~L 496 (830)
T PRK12904 433 VLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQA--------------GRPGAVTIATNMAGRGTDIKL 496 (830)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhc--------------CCCceEEEecccccCCcCccC
Confidence 9999999999999999999999999999995 678999999998 666788999999999999653
Q ss_pred --------------------------------------CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 428 --------------------------------------ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 428 --------------------------------------a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
.=+||.-+.+-|-..+.|..||++|+|..=....|
T Consensus 497 gGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 497 GGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 34788889999999999999999999987554444
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.57 E-value=3.3e-15 Score=123.43 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=72.2
Q ss_pred HHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcch
Q 005858 363 DFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV 442 (673)
Q Consensus 363 ~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~ 442 (673)
++|+..|+++..++|.++..+|..+++.|+.. ...+|++|.++++|||++.+++||+++++||+..
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~--------------~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~ 66 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG--------------EIRVLIATDILGEGIDLPDASHVIFYDPPWSPEE 66 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT--------------SSSEEEESCGGTTSSTSTTESEEEESSSESSHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc--------------CceEEEeeccccccccccccccccccccCCCHHH
Confidence 46889999999999999999999999999933 3377888899999999999999999999999999
Q ss_pred HHHHhHhhhccC
Q 005858 443 DKQALQRAHRIG 454 (673)
Q Consensus 443 ~~Qa~gR~~RiG 454 (673)
+.|+.||++|.|
T Consensus 67 ~~Q~~GR~~R~g 78 (78)
T PF00271_consen 67 YIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSTTT
T ss_pred HHHHhhcCCCCC
Confidence 999999999987
No 107
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.56 E-value=6.3e-14 Score=158.65 Aligned_cols=317 Identities=20% Similarity=0.279 Sum_probs=201.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHH-HHHhhhc---CCCCCC-EEEEECc-ccHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISF-LSYLKFS---QMSPGP-FLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~-i~~l~~~---~~~~~~-~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.++|-|..|+-.+ ..|+.+|-...+|+|||+.-+.. +...+.. ....|| .|||||+ .+..|..+++.+|+
T Consensus 387 k~~~IQ~qAiP~I----msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~ 462 (997)
T KOG0334|consen 387 KPTPIQAQAIPAI----MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL 462 (997)
T ss_pred CCcchhhhhcchh----ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 5677777776533 34788999999999999976332 2222111 112255 5999997 56677666666665
Q ss_pred --CCCeEE-EEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh----ccccc-cCCCccEEEEcCCcc
Q 005858 110 --PKLEVL-RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM----DQGFL-SQIPWCYTIIDEAQR 181 (673)
Q Consensus 110 --p~~~v~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~----~~~~l-~~~~~~~vIvDEaH~ 181 (673)
.++.++ +|.|.... ..+-. + .. ..+|+|+|+..+.. ....+ +-....+||+|||.+
T Consensus 463 k~l~ir~v~vygg~~~~-~qiae-----l---------kR-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDr 526 (997)
T KOG0334|consen 463 KLLGIRVVCVYGGSGIS-QQIAE-----L---------KR-GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADR 526 (997)
T ss_pred hhcCceEEEecCCccHH-HHHHH-----H---------hc-CCceEEeccchhhhhHhhcCCccccccccceeeechhhh
Confidence 244444 44444433 22211 1 12 26789998876532 22222 333467999999999
Q ss_pred ccC--cccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHH
Q 005858 182 LKN--PSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259 (673)
Q Consensus 182 ~KN--~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 259 (673)
+-. ..-+.++.+...-+.+..++.|+|- -.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatf------------------------------pr------------------ 558 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATF------------------------------PR------------------ 558 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhh------------------------------hH------------------
Confidence 742 2223334443311122234444441 00
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHH
Q 005858 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLK 339 (673)
Q Consensus 260 ~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~ 339 (673)
++.-++..+. .+|- ++.+. ++..+.+ ............+.|+..|.++|.
T Consensus 559 ---------~m~~la~~vl-----~~Pv--eiiv~----~~svV~k----------~V~q~v~V~~~e~eKf~kL~eLl~ 608 (997)
T KOG0334|consen 559 ---------SMEALARKVL-----KKPV--EIIVG----GRSVVCK----------EVTQVVRVCAIENEKFLKLLELLG 608 (997)
T ss_pred ---------HHHHHHHHhh-----cCCe--eEEEc----cceeEec----------cceEEEEEecCchHHHHHHHHHHH
Confidence 0111111111 1111 11110 1111111 111112222335678888999999
Q ss_pred HHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 340 KLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 340 ~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
...+ ..++|||++....++.+.+-|...||++..++|+++..+|...+.+|+ ++...+|+.|+..
T Consensus 609 e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK--------------~~~~~LLvaTsvv 673 (997)
T KOG0334|consen 609 ERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK--------------NGVVNLLVATSVV 673 (997)
T ss_pred HHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh--------------ccCceEEEehhhh
Confidence 8876 569999999999999999999999999999999999999999999999 6677899999999
Q ss_pred ccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 420 GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
..||++.....||+||.|--...|..|.||..|.|-+- .-|-|+..
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999999988888999999999988765 44455554
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=5.5e-14 Score=136.88 Aligned_cols=160 Identities=27% Similarity=0.295 Sum_probs=112.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC-cccHHHHHHHHHHHCCC-
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP-LSVTDGWVSEMAKFTPK- 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~k~~p~- 111 (673)
..+++|||.+++..+.... .++++..++|+|||.+++.++........ .+++||++| ..+..+|..++.++++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3678999999998776531 78999999999999988877776654432 457999999 57779999999998865
Q ss_pred --CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccC-cc
Q 005858 112 --LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKN-PS 186 (673)
Q Consensus 112 --~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN-~~ 186 (673)
.....+.+... ...... + ....++++++|++.+...... .....++++|+||+|.+.+ ..
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~-----~---------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 146 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRK-----L---------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGF 146 (201)
T ss_pred CeEEEEEeCCcch-HHHHHH-----H---------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCc
Confidence 33444444332 111111 1 111248999999988776544 4556788999999999986 33
Q ss_pred cHHHHHHHhhc-CCCcEEEEecCCCCC
Q 005858 187 SVLYNVLREHF-LMPRRLLMTGTPIQN 212 (673)
Q Consensus 187 s~~~~~l~~~~-~~~~rllLTGTPi~N 212 (673)
......+.... ...+++++||||..+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 147 GDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHHHHhCCccceEEEEecCCchh
Confidence 33333333323 577889999999733
No 109
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.56 E-value=6.6e-12 Score=125.92 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=207.7
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
..-.++|-|+|+.+.+-++..+.+....|+-.-+|+|||=++...+......+ +.+.|..|. .++..-...+...+
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhh
Confidence 44568999999999999999999999999999999999999988887765443 568888885 66777777788888
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc-ccH
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP-SSV 188 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~-~s~ 188 (673)
++..+...+|+.+..- ..+=+|-||++.++-.. .||++|+||..-+-=. +-.
T Consensus 169 ~~~~I~~Lyg~S~~~f---------------------r~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~ 221 (441)
T COG4098 169 SNCDIDLLYGDSDSYF---------------------RAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQS 221 (441)
T ss_pred ccCCeeeEecCCchhc---------------------cccEEEEehHHHHHHHh------hccEEEEeccccccccCCHH
Confidence 8888888888764321 11235666666664322 4699999999976322 222
Q ss_pred HHHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 189 ~~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
+..++.... ....++.|||||-.. |- +.... .++..-
T Consensus 222 L~~Av~~ark~~g~~IylTATp~k~----l~------------------r~~~~--------------------g~~~~~ 259 (441)
T COG4098 222 LQYAVKKARKKEGATIYLTATPTKK----LE------------------RKILK--------------------GNLRIL 259 (441)
T ss_pred HHHHHHHhhcccCceEEEecCChHH----HH------------------HHhhh--------------------CCeeEe
Confidence 444444422 234579999999411 10 00000 000000
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHH-HHHHHHHHHHhCCC
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLV-VLDLLLKKLYNSGH 346 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~-~l~~ll~~~~~~g~ 346 (673)
.+-+|-.. .++.+|...-....-+.+ .-+|+. .|...|++...+|.
T Consensus 260 klp~RfH~-----~pLpvPkf~w~~~~~k~l----------------------------~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 260 KLPARFHG-----KPLPVPKFVWIGNWNKKL----------------------------QRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred ecchhhcC-----CCCCCCceEEeccHHHHh----------------------------hhccCCHHHHHHHHHHHhcCC
Confidence 01122211 122333322221111110 111221 46778888888999
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEE---EeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYER---LDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~---i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.++||.....+++.+...|+.. +++.. ++.. ...|.+.+..|+ .+..-+|++|.....|+
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~-~~~~~i~~Vhs~--d~~R~EkV~~fR--------------~G~~~lLiTTTILERGV 369 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKK-LPKETIASVHSE--DQHRKEKVEAFR--------------DGKITLLITTTILERGV 369 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhh-CCccceeeeecc--CccHHHHHHHHH--------------cCceEEEEEeehhhccc
Confidence 9999999999999988888543 44333 3333 347999999998 66778899999999999
Q ss_pred CCCCCCeeEeeCCC--CCcchHHHHhHhhhccCCcC--eEEEEEEe
Q 005858 424 NLVAADTVIFYEQD--WNPQVDKQALQRAHRIGQMN--HVLSINLV 465 (673)
Q Consensus 424 NL~~a~~VI~~D~~--wnp~~~~Qa~gR~~RiGQ~k--~V~Vy~lv 465 (673)
+++..+..++=.-. ++.+.+.|--||++|--..- .|..|++-
T Consensus 370 Tfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 370 TFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred ccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 99999998886555 89999999999999965433 45555543
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=4e-13 Score=152.74 Aligned_cols=369 Identities=18% Similarity=0.158 Sum_probs=217.7
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH----HHHHHHHHHHC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT----DGWVSEMAKFT 109 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~k~~ 109 (673)
....++-|+-|.--| +.|-|.-..||.|||+++...+..... ..+.+.||+|+.-+ ..|...+.+|.
T Consensus 80 gm~~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~~l~al---~g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 80 EMRHFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPAYLNAL---TGKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred CCCcCchHHhcchHh------cCCccccccCCCCchHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 344677888775322 357788899999999987755543322 33458999998655 66888888886
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc----c-----ccccCCCccEEEEcCCc
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD----Q-----GFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~----~-----~~l~~~~~~~vIvDEaH 180 (673)
++.+....+...... +. ....+||+..|...|.-+ . ...-+.++.++||||+.
T Consensus 151 -Glsv~~i~~~~~~~~--r~---------------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 151 -GLTVGINVAGLGQQE--KK---------------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred -CCeEEEecCCCCHHH--HH---------------hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchh
Confidence 777776666543211 11 223578999998876322 1 11223578899999998
Q ss_pred cccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHH----hCCC------------CCC-----------C-h
Q 005858 181 RLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHF----CMPS------------VFG-----------T-L 232 (673)
Q Consensus 181 ~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~----l~p~------------~~~-----------~-~ 232 (673)
.+-- -.++.-+++||.+ ... .++|..++- |.+. .|. + -
T Consensus 213 siLi------------DEArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G 278 (908)
T PRK13107 213 SILI------------DEARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERG 278 (908)
T ss_pred hhcc------------ccCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHH
Confidence 7532 1344568888854 333 556654442 2111 000 0 0
Q ss_pred HHHHHHhhh--hc-cCCCcchhhhHHHHHHHHHHHHHHHH-hhhhhhhhhhcCCc---------cCCCcc----------
Q 005858 233 NQFLSTFKD--AV-HSSSAPKRGKIKEQFTSLKGILSAFM-LRRTKQKLVECGHL---------MLPPLT---------- 289 (673)
Q Consensus 233 ~~f~~~f~~--~~-~~~~~~~~~~~~~~~~~L~~~l~~~~-lrr~k~~v~~~~~~---------~lp~~~---------- 289 (673)
..+.+.+.. .+ .....-......+....+...++.+. ..+..+.+...+.+ .+|...
T Consensus 279 ~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIE 358 (908)
T PRK13107 279 QEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVE 358 (908)
T ss_pred HHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHH
Confidence 011111110 00 00000000001122334444444443 34444444332111 111100
Q ss_pred -----cccH---------HHH--HHHHHHH---------hhhHHHHHhhc--ccccccccc--------ccccCCcHHHH
Q 005858 290 -----EITV---------LQK--KVYASIL---------RKELPKLLALS--SRTANHQSL--------QNTASGKLVVL 334 (673)
Q Consensus 290 -----e~~~---------~Q~--~~y~~~l---------~~~~~~l~~~~--~~~~~~~~l--------~~~~s~Kl~~l 334 (673)
.+++ .|. ..|..+. ..++..+..+. ..+.+.|.. ......|..++
T Consensus 359 aKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Ai 438 (908)
T PRK13107 359 AKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAI 438 (908)
T ss_pred HhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHH
Confidence 0000 111 1122111 00111111110 011111111 11246688888
Q ss_pred HHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 335 DLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
.+-+..+.+.|..|||||.+....+.+..+|...|+++..+++..+..+|..+.+.|+. +. +++
T Consensus 439 i~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--------------G~--VtI 502 (908)
T PRK13107 439 IKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--------------GA--VTI 502 (908)
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--------------Cc--EEE
Confidence 88888888999999999999999999999999999999999999999999999999982 22 889
Q ss_pred eccccccccCCC-------------------------------------CCCeeEeeCCCCCcchHHHHhHhhhccCCcC
Q 005858 415 STRAGGVGLNLV-------------------------------------AADTVIFYEQDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 415 st~agg~GiNL~-------------------------------------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
+|..+|.|+|+. +.=+||.-+.+-|-..+.|..||++|+|..=
T Consensus 503 ATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPG 582 (908)
T PRK13107 503 ATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAG 582 (908)
T ss_pred ecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCC
Confidence 999999999965 2347888999999999999999999999864
Q ss_pred eE
Q 005858 458 HV 459 (673)
Q Consensus 458 ~V 459 (673)
..
T Consensus 583 ss 584 (908)
T PRK13107 583 SS 584 (908)
T ss_pred ce
Confidence 33
No 111
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.6e-14 Score=145.45 Aligned_cols=313 Identities=19% Similarity=0.240 Sum_probs=200.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHH-HHHHHHHHCCC--CeE
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDG-WVSEMAKFTPK--LEV 114 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~k~~p~--~~v 114 (673)
-.-|..||. -...|.+++.-...|+|||.+-+..+...........-+||++|...+.+ -..-...+... .++
T Consensus 50 SaIQqraI~----p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v 125 (397)
T KOG0327|consen 50 SAIQQRAIL----PCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSV 125 (397)
T ss_pred hHHHhcccc----ccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceee
Confidence 345555553 22346788999999999999955444433222222233799999976643 33333444443 455
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh--ccccccCCCccEEEEcCCccccCcc--cHHH
Q 005858 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM--DQGFLSQIPWCYTIIDEAQRLKNPS--SVLY 190 (673)
Q Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~--~~~~l~~~~~~~vIvDEaH~~KN~~--s~~~ 190 (673)
....|....+..-.. .......+++.|+..+.. +...+...+..+.|+|||..++..+ .+.+
T Consensus 126 ~~~igg~~~~~~~~~--------------i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~ 191 (397)
T KOG0327|consen 126 HACIGGTNVRREDQA--------------LLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIY 191 (397)
T ss_pred eeecCcccchhhhhh--------------hhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHH
Confidence 544454333322111 122345788999865533 2335666678899999999876543 4556
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHh
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l 270 (673)
..+...-.....+++|||-. .|+.- -.+.|.. .|..+
T Consensus 192 ~if~~lp~~vQv~l~SAT~p----~~vl~---------------vt~~f~~------------------------~pv~i 228 (397)
T KOG0327|consen 192 DIFQELPSDVQVVLLSATMP----SDVLE---------------VTKKFMR------------------------EPVRI 228 (397)
T ss_pred HHHHHcCcchhheeecccCc----HHHHH---------------HHHHhcc------------------------CceEE
Confidence 66655334456788999942 11110 0011110 00000
Q ss_pred hhhhhhhhhcCCccCCCcccccH-HHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEE
Q 005858 271 RRTKQKLVECGHLMLPPLTEITV-LQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVL 349 (673)
Q Consensus 271 rr~k~~v~~~~~~~lp~~~e~~~-~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvl 349 (673)
+-.+.+++. .|+.+|..... ..|+..|..+.. +-...+
T Consensus 229 --------------~vkk~~ltl~gikq~~i~v~k-----------------------~~k~~~l~dl~~----~~~q~~ 267 (397)
T KOG0327|consen 229 --------------LVKKDELTLEGIKQFYINVEK-----------------------EEKLDTLCDLYR----RVTQAV 267 (397)
T ss_pred --------------Eecchhhhhhheeeeeeeccc-----------------------cccccHHHHHHH----hhhcce
Confidence 111112111 12222211111 116666666666 445789
Q ss_pred EEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCC
Q 005858 350 LFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAAD 429 (673)
Q Consensus 350 IFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~ 429 (673)
|||+...-++.+...|..+++....++|.+.+.+|..+++.|+ ++..-+|++|...+.|++++.++
T Consensus 268 if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~--------------~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 268 IFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR--------------SGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred EEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh--------------cCCceEEeeccccccccchhhcc
Confidence 9999999999999999999999999999999999999999998 55667799999999999999999
Q ss_pred eeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 430 TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 430 ~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
.||+||.|-|+.+|..|+||++|.|-+ -.+..++++.
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCC--ceeeeeehHh
Confidence 999999999999999999999999964 2334555553
No 112
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.54 E-value=1.7e-13 Score=140.97 Aligned_cols=308 Identities=19% Similarity=0.211 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhc----CCCCCC-EEEEECc-ccHHHHHHHHHHH---C
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFS----QMSPGP-FLVLCPL-SVTDGWVSEMAKF---T 109 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~----~~~~~~-~LIV~P~-sll~~W~~E~~k~---~ 109 (673)
-|..++..+++ |...+.-.-+|+|||..-+--+ ..+... ....+| .+|++|+ .+..|-...+.+. |
T Consensus 45 IQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 45 IQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred hhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 45556655544 4677777899999999865443 333221 122223 6888996 6777777777654 4
Q ss_pred C-CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCccccCc
Q 005858 110 P-KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~~KN~ 185 (673)
+ .++++....+..... .+.. -...++|||+|+..+...... ...-...++|+|||.-+-..
T Consensus 121 ~k~lr~~nl~s~~sdsv-~~~~--------------L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf 185 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSV-NSVA--------------LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF 185 (569)
T ss_pred HHhhhhhhhhcccchHH-HHHH--------------HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc
Confidence 3 344443332211111 1111 223589999999988765321 22234579999999987654
Q ss_pred cc-HHHHHHHhhcCCC-cEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 186 SS-VLYNVLREHFLMP-RRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 186 ~s-~~~~~l~~~~~~~-~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
.- .-.+.+...++.. ..++||||-- ..+..|.+
T Consensus 186 GYeedlk~l~~~LPr~~Q~~LmSATl~---------------------------------------------dDv~~LKk 220 (569)
T KOG0346|consen 186 GYEEDLKKLRSHLPRIYQCFLMSATLS---------------------------------------------DDVQALKK 220 (569)
T ss_pred ccHHHHHHHHHhCCchhhheeehhhhh---------------------------------------------hHHHHHHH
Confidence 32 1222333334432 3588999931 11222222
Q ss_pred HH--HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHH
Q 005858 264 IL--SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKL 341 (673)
Q Consensus 264 ~l--~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~ 341 (673)
++ .|+++.-+-.+ +|+...+ .+..+....-.|+..+-.+++--
T Consensus 221 L~l~nPviLkl~e~e--------l~~~dqL---------------------------~Qy~v~cse~DKflllyallKL~ 265 (569)
T KOG0346|consen 221 LFLHNPVILKLTEGE--------LPNPDQL---------------------------TQYQVKCSEEDKFLLLYALLKLR 265 (569)
T ss_pred HhccCCeEEEecccc--------CCCcccc---------------------------eEEEEEeccchhHHHHHHHHHHH
Confidence 21 22222211111 2210000 00001111233444455544432
Q ss_pred HhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc----
Q 005858 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR---- 417 (673)
Q Consensus 342 ~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~---- 417 (673)
=-..|.|||.+.....-.|.-+|+..|++.+.++|.++...|.-++++|| .+..-+||.|+
T Consensus 266 -LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN--------------kG~YdivIAtD~s~~ 330 (569)
T KOG0346|consen 266 -LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN--------------KGLYDIVIATDDSAD 330 (569)
T ss_pred -HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh--------------CcceeEEEEccCccc
Confidence 23459999999999999999999999999999999999999999999999 33334444444
Q ss_pred -------------------------------ccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 418 -------------------------------AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 418 -------------------------------agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
-.+.|||++..++|++||.|-++..|++|+||..|-|.+-.+.-
T Consensus 331 ~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 331 GDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred hhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 12479999999999999999999999999999999876654433
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.53 E-value=5.9e-11 Score=135.37 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=110.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
..+++..|...+..+...|.++||||.....++.|.++|...|+++..++|.++..+|.++++.|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr-------------- 489 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR-------------- 489 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--------------
Confidence 355667777777777788999999999999999999999999999999999999999999999997
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeC-----CCCCcchHHHHhHhhhccCCcCeEEEEEEecCCC--HHHHHHHH
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYE-----QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT--VEEVIMRR 477 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D-----~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T--iEe~i~~~ 477 (673)
.+...+|++|..++.|++++.++.||++| .+-+...+.|++||++|... -.++.|+...| +...|.+.
T Consensus 490 ~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~---G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 490 LGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC---CEEEEEEcCCCHHHHHHHHHH
Confidence 44456678899999999999999999999 46688899999999999732 23455555443 44444443
No 114
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.53 E-value=1.5e-13 Score=125.91 Aligned_cols=137 Identities=26% Similarity=0.243 Sum_probs=98.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHHHCC-CCeEEEEeCChHHHHHHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAKFTP-KLEVLRYVGEREQRRNIRRTMYEH 134 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k~~p-~~~v~~~~g~~~~~~~~~~~~~~~ 134 (673)
++++.+++|+|||.+++.++..+...+ ..++++|+||...+ .+|.+.+..+.. ...+..+.+..........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 689999999999999999998886553 45679999998655 556667777775 4666666665544332211
Q ss_pred HHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCcccHHHH--HHHhhcCCCcEEEEecCC
Q 005858 135 VKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNPSSVLYN--VLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 135 ~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~~s~~~~--~l~~~~~~~~rllLTGTP 209 (673)
.....+++++||+.+...... .....++++|+||+|.+.+....... .........+++++||||
T Consensus 76 ----------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 ----------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ----------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 234578999999988765433 23557899999999999887654431 222235667889999998
No 115
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.52 E-value=3.5e-13 Score=156.24 Aligned_cols=309 Identities=19% Similarity=0.221 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
-..||-|.++|+-. ..|..+++-..+|.||++.-- + ..-...+-+|||.|+ ||+.--..-+.+. ++.
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ-----l-PA~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ-----L-PALLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee-----c-cccccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 35789999999733 337889999999999998542 1 122234578999997 7764433333222 333
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccc---cC----CCccEEEEcCCccccCcc
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFL---SQ----IPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l---~~----~~~~~vIvDEaH~~KN~~ 186 (673)
.....+...... +..+++.+.+ ....++++-.|+|.+....... .. ....++|+||||......
T Consensus 331 a~~L~s~q~~~~--~~~i~q~l~~-------~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 331 ACFLSSIQTAAE--RLAILQKLAN-------GNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred eeeccccccHHH--HHHHHHHHhC-------CCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 333333333222 2333444332 2245789999999986653322 11 125799999999876522
Q ss_pred ------cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 187 ------SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 187 ------s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
-+.-..++..+...-.++||||--..--.++...|++-+|.++.+ .|..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR------------------- 456 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNR------------------- 456 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCC-------------------
Confidence 122233444455556789999965555555555555544432211 0100
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcH--HHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKL--VVLDLLL 338 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl--~~l~~ll 338 (673)
+ .+....+.|. ..+..++
T Consensus 457 --------------------------~----------------------------------NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 457 --------------------------P----------------------------------NLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred --------------------------C----------------------------------CceEEEEeccCccchHHHH
Confidence 0 0000000000 0111111
Q ss_pred H--HHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEec
Q 005858 339 K--KLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST 416 (673)
Q Consensus 339 ~--~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st 416 (673)
. .....+...||||....+.+.+...|...|+....+|.+++..+|..+.+.|. .+...+++.|
T Consensus 477 ~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~--------------~~~~~VivAT 542 (941)
T KOG0351|consen 477 EESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM--------------SDKIRVIVAT 542 (941)
T ss_pred HHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh--------------cCCCeEEEEE
Confidence 1 12245678999999999999999999999999999999999999999999998 3335567788
Q ss_pred cccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEE
Q 005858 417 RAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463 (673)
Q Consensus 417 ~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~ 463 (673)
=|.|-|||-.....||+|..|-+-.-|-|-.|||+|.|+...++.|+
T Consensus 543 VAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 543 VAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred eeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 89999999999999999999999999999999999999988766654
No 116
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.50 E-value=1.4e-12 Score=133.67 Aligned_cols=322 Identities=18% Similarity=0.193 Sum_probs=199.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEE
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLR 116 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~ 116 (673)
-|-|..+++-+++. +..+.+++++|.||++.--.-. |. ..+-++||.|+ .++..-.+-+.+.--....+.
T Consensus 22 s~LQE~A~~c~VK~---k~DVyVsMPTGaGKSLCyQLPa--L~----~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVKR---KCDVYVSMPTGAGKSLCYQLPA--LV----HGGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHhc---cCcEEEeccCCCchhhhhhchH--HH----hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 46788998877776 6789999999999998532111 11 23457888886 455444444444332221111
Q ss_pred EeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc-----c-ccccCCCccEEEEcCCccccC------
Q 005858 117 YVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-----Q-GFLSQIPWCYTIIDEAQRLKN------ 184 (673)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-----~-~~l~~~~~~~vIvDEaH~~KN------ 184 (673)
-.-+..+|..+...+.. ......++-+|+++...+ . .........|++|||||....
T Consensus 93 SKlSt~ER~ri~~DL~~-----------ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFR 161 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAK-----------EKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFR 161 (641)
T ss_pred chhhHHHHHHHHHHHHh-----------cCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccC
Confidence 11222233322222211 122345788888876443 1 222334568999999998643
Q ss_pred cccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCC-CCChHHHHH-HhhhhccCCCcchhhhHHHHHHHHH
Q 005858 185 PSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSV-FGTLNQFLS-TFKDAVHSSSAPKRGKIKEQFTSLK 262 (673)
Q Consensus 185 ~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~-~~~~~~f~~-~f~~~~~~~~~~~~~~~~~~~~~L~ 262 (673)
+.-..--.++..+...-.+.||||.-..--+|+|..|++-.|-. |.+ ..|.. -|.+
T Consensus 162 PDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~NLFYD--------------------- 219 (641)
T KOG0352|consen 162 PDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDNLFYD--------------------- 219 (641)
T ss_pred cchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhhhhHH---------------------
Confidence 22233345555455566789999987777788888888766632 211 11111 1100
Q ss_pred HHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccc-cccccccccccCCcHHHHHHHHHHH
Q 005858 263 GILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSR-TANHQSLQNTASGKLVVLDLLLKKL 341 (673)
Q Consensus 263 ~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~-~~~~~~l~~~~s~Kl~~l~~ll~~~ 341 (673)
..|+..+...+..+..+... ..+|...+. .-
T Consensus 220 ----------------------------------~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~--------------~~ 251 (641)
T KOG0352|consen 220 ----------------------------------NHMKSFITDCLTVLADFSSSNLGKHEKASQ--------------NK 251 (641)
T ss_pred ----------------------------------HHHHHHhhhHhHhHHHHHHHhcCChhhhhc--------------CC
Confidence 00111111111111111100 000000000 00
Q ss_pred HhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc
Q 005858 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421 (673)
Q Consensus 342 ~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~ 421 (673)
.....=-||||..+...+.+.-.|...|++..-++.+....+|..+.+.+- +++. -+|+.|-..|-
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM-------------~~~~-PvI~AT~SFGM 317 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM-------------NNEI-PVIAATVSFGM 317 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh-------------cCCC-CEEEEEecccc
Confidence 001123599999999999999999999999999999999999999999887 3344 45677889999
Q ss_pred ccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEE
Q 005858 422 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463 (673)
Q Consensus 422 GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~ 463 (673)
|++-++...||+++++-|.+-|-|--||++|.|-..-+..|+
T Consensus 318 GVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 318 GVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred ccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 999999999999999999999999999999999887777765
No 117
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.49 E-value=2.2e-12 Score=153.17 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc---EEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS---YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~---~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
.....+|||+.....++.+.+.|...+++ +.-++|+++.++|..+++.+ +.+-+|++|..+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----------------g~rkIIVATNIA 347 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----------------SGRRIVLATNVA 347 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----------------CCeeEEEeccHH
Confidence 34578999999999999999999988765 56789999999999886542 235688999999
Q ss_pred ccccCCCCCCeeEeeC---------------CCCCc---chHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 420 GVGLNLVAADTVIFYE---------------QDWNP---QVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D---------------~~wnp---~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
++||++.+.++||.++ ++-.| +.+.||.||++|.+ +=.+|+|+++..
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d 412 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDD 412 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHH
Confidence 9999999999999975 33333 67899999999973 556778887643
No 118
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=1.8e-12 Score=145.89 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=177.7
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHH-HHhhhc------CCCCCCEEEEECc-ccHHHHHHHHHHHCC--CCeEEEEeCCh
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFL-SYLKFS------QMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KLEVLRYVGER 121 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~------~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~~v~~~~g~~ 121 (673)
|+.+.|+|++.++|+|||..+...| ..++.. ....-.++-|+|. ++.....+.|.+-+. ++.+..+.|+.
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ 202 (1230)
T KOG0952|consen 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDT 202 (1230)
T ss_pred hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcc
Confidence 5568899999999999999876544 444321 1122347889995 555444444433332 57888888876
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh-------ccccccCCCccEEEEcCCccccCcccHHH----
Q 005858 122 EQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM-------DQGFLSQIPWCYTIIDEAQRLKNPSSVLY---- 190 (673)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~-------~~~~l~~~~~~~vIvDEaH~~KN~~s~~~---- 190 (673)
.....- + ...+++|||+|.+-- +...+ ....+||+||.|-+...-...-
T Consensus 203 ql~~te---i---------------~~tqiiVTTPEKwDvvTRk~~~d~~l~--~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 203 QLTKTE---I---------------ADTQIIVTTPEKWDVVTRKSVGDSALF--SLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred hhhHHH---H---------------HhcCEEEecccceeeeeeeeccchhhh--hheeeEEeeeehhhcCcccchHHHHH
Confidence 543321 1 125899999997621 11111 1357999999999987544322
Q ss_pred -HHH---HhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 191 -NVL---REHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 191 -~~l---~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
+.+ .......|.++||||- +| ..| +-.||+.+.....-.|...|....-..
T Consensus 263 aRtlr~vessqs~IRivgLSATl-PN-~eD---vA~fL~vn~~~glfsFd~~yRPvpL~~-------------------- 317 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATL-PN-YED---VARFLRVNPYAGLFSFDQRYRPVPLTQ-------------------- 317 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccC-CC-HHH---HHHHhcCCCccceeeecccccccceee--------------------
Confidence 222 1223446778999993 22 333 334555544444444444443210000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
.++- .+.+ .+.....++...+...+ .++..+|+
T Consensus 318 ~~iG--------------~k~~-----------------------------~~~~~~~~~d~~~~~kv----~e~~~~g~ 350 (1230)
T KOG0952|consen 318 GFIG--------------IKGK-----------------------------KNRQQKKNIDEVCYDKV----VEFLQEGH 350 (1230)
T ss_pred eEEe--------------eecc-----------------------------cchhhhhhHHHHHHHHH----HHHHHcCC
Confidence 0000 0000 00000111111222222 23346799
Q ss_pred eEEEEecCchHHHHHHHHHHh----CCCc-------------------EEEEeCCcCHHHHHHHHHhhccchhHhhhhhh
Q 005858 347 RVLLFAQMTQTLDILQDFLEL----RKYS-------------------YERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~----~g~~-------------------~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~ 403 (673)
.|+||+..+...-...+.|.. .|.. ...-+.++...+|+-.-+.|.
T Consensus 351 qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~----------- 419 (1230)
T KOG0952|consen 351 QVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK----------- 419 (1230)
T ss_pred eEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh-----------
Confidence 999999877554444444432 2222 223345667788888888998
Q ss_pred cCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcch----------HHHHhHhhhccCCcCeEEEEEEecC
Q 005858 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV----------DKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 404 ~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~----------~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
.+..-+|++|....-|+||++-..+|--...|+++. ..|-+|||+|.+=.+.-..+...+.
T Consensus 420 ---~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952|consen 420 ---EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred ---cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecc
Confidence 555566889999999999998766776666677655 6899999999875444334434443
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=6e-12 Score=150.06 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=87.7
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCC---cEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKY---SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~---~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
....+|||+.....++.+.+.|...++ .+..++|+++.++|.++++.+. .+.+|++|..+.
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----------------~rkIVLATNIAE 341 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----------------GRRIVLATNVAE 341 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----------------CceEEEeccHHH
Confidence 456899999999999999999987654 4788999999999998854432 246789999999
Q ss_pred cccCCCCCCeeEeeCCC----C--------------CcchHHHHhHhhhccCCcCeEEEEEEecCCCH
Q 005858 421 VGLNLVAADTVIFYEQD----W--------------NPQVDKQALQRAHRIGQMNHVLSINLVTEHTV 470 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~----w--------------np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~Ti 470 (673)
+||++.+..+||.++.. + +.+.+.||.||++|.| +=.+|+|+++...
T Consensus 342 tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 342 TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 99999999999988732 1 3468899999999987 5567888876543
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.4e-11 Score=130.17 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=106.1
Q ss_pred HHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 340 KLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 340 ~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
...+.++|+||-+-...|++-|.+||...|+++..+|.....-+|.+++.+.+ -+.+-+|+.....
T Consensus 441 ~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR--------------~G~~DvLVGINLL 506 (663)
T COG0556 441 KRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLR--------------LGEFDVLVGINLL 506 (663)
T ss_pred HHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHh--------------cCCccEEEeehhh
Confidence 33467899999999999999999999999999999999999999999999998 6666778889999
Q ss_pred ccccCCCCCCeeEeeCCCC-----CcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHH
Q 005858 420 GVGLNLVAADTVIFYEQDW-----NPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKL 482 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~w-----np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~ 482 (673)
-+||+++.+..|.++|.+- +-..+.|-+|||.|--.- .|..|-=...+|+++.|-+...++.
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR~ 573 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERRRE 573 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999874 788999999999993332 3445543445567777766655443
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.45 E-value=9.9e-11 Score=134.45 Aligned_cols=125 Identities=20% Similarity=0.188 Sum_probs=106.5
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
..+++..+...+..+...|.++||||.....++.|..+|...|+++..++|.++..+|..++..|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~-------------- 493 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR-------------- 493 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--------------
Confidence 345677777778888889999999999999999999999999999999999999999999999997
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCC-----CCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQ-----DWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
.+...+|++|..++.|++++.++.||++|. +-++..+.|++||++|. . .-.++.|+...
T Consensus 494 ~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 494 LGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred cCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 334566788999999999999999999996 45889999999999994 2 23455566543
No 122
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.44 E-value=2.4e-13 Score=112.77 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCC
Q 005858 360 ILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWN 439 (673)
Q Consensus 360 ~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wn 439 (673)
.+.++|...++.+..++|+++.++|..+++.|+. +...+|++|.++++|+|++.+++||+++++||
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--------------~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~ 67 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN--------------GKIKVLVATDVAERGLDLPGVDLVIIYDLPWS 67 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc--------------CCCeEEEECChhhCCcChhcCCEEEEeCCCCC
Confidence 4677888889999999999999999999999983 33488899999999999999999999999999
Q ss_pred cchHHHHhHhhhccC
Q 005858 440 PQVDKQALQRAHRIG 454 (673)
Q Consensus 440 p~~~~Qa~gR~~RiG 454 (673)
+..+.|++||++|.|
T Consensus 68 ~~~~~Q~~gR~~R~g 82 (82)
T smart00490 68 PASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHHhhcccccCC
Confidence 999999999999987
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.6e-11 Score=140.54 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
..|..+|...+..+...|..|||||.+....+.|..+|...|+++..|++ ...+|.+.+..|. +
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~A--------------G 644 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEA--------------G 644 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhc--------------C
Confidence 45888899999888889999999999999999999999999999999997 5779999999998 6
Q ss_pred CcEEEEEeccccccccCCCCCC--------eeEeeCCCCCcchHHHHhHhhhccCCcC
Q 005858 408 DAFVFMISTRAGGVGLNLVAAD--------TVIFYEQDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~a~--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
+...++++|..+|.|+++.-.. +||..+.+-+...+.|+.||++|.|..=
T Consensus 645 ~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpG 702 (1025)
T PRK12900 645 QKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPG 702 (1025)
T ss_pred CCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCc
Confidence 6778899999999999988333 4488899999999999999999999864
No 124
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.41 E-value=6.8e-12 Score=123.70 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=105.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHH-HHHHhhhcC-CCCCCEEEEECc-ccHHHHHHHHHHHCC--
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS-FLSYLKFSQ-MSPGPFLVLCPL-SVTDGWVSEMAKFTP-- 110 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~-~i~~l~~~~-~~~~~~LIV~P~-sll~~W~~E~~k~~p-- 110 (673)
.|+++|.+++..+.+ +.++++..++|+|||++.+. ++..+.... .....+|||||. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 489999999977665 68899999999999998544 444443321 233458999996 678999999988864
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc-c
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS-S 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~-s 187 (673)
+..+..+.|.......... .....+++|+|++.+.... ..+.-..++++|+||+|.+.+.. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~ 161 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK---------------LKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFE 161 (203)
T ss_pred CceEEEEECCCCHHHHHHH---------------hcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChH
Confidence 5677777776654332211 0124689999998775432 11223357899999999986543 2
Q ss_pred HHHHHHHhhcC-CCcEEEEecCCC
Q 005858 188 VLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 188 ~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
.....+...+. ....+++||||-
T Consensus 162 ~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 162 DQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHHHHhCCcccEEEEEeccCC
Confidence 22233333243 466799999986
No 125
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.39 E-value=2.2e-11 Score=141.70 Aligned_cols=365 Identities=15% Similarity=0.095 Sum_probs=207.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECc-ccHHHHHHHHHHHCCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPL-SVTDGWVSEMAKFTPK 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~-sll~~W~~E~~k~~p~ 111 (673)
.-..+++|..+++........+.-++|..+||.|||..++..+....... .....++.|.|. +++.+-.+.+.++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 34458999999988877765555789999999999999998887776552 233446777775 5667788888877754
Q ss_pred CeEEEE--eCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc-c-----ccccCCCccEEEEcCCcccc
Q 005858 112 LEVLRY--VGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-Q-----GFLSQIPWCYTIIDEAQRLK 183 (673)
Q Consensus 112 ~~v~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-~-----~~l~~~~~~~vIvDEaH~~K 183 (673)
..+... +|.....-..-... ...............-+.+.+++....... . ..+..+.-.++|+||+|-+-
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~-~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQ-DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred cccccccccccccchhhhcccc-ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 444333 44332211100000 000000000000111122223332222221 0 00222445689999999886
Q ss_pred Cc-ccHHHHHHHhhc--CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 184 NP-SSVLYNVLREHF--LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 184 N~-~s~~~~~l~~~~--~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
.. ......++...+ .....+++|||+-+ .|.+.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~----------------------~~~~~---------------------- 387 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPP----------------------FLKEK---------------------- 387 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCH----------------------HHHHH----------------------
Confidence 55 222222222212 24678999999631 01111
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
+.............. ...|...+....++ .+....... . ..+......
T Consensus 388 ----l~~~~~~~~~~~~~~---~~~~~~~e~~~~~~-~~~~~~~~~-----------------------~-~~~~~~~~~ 435 (733)
T COG1203 388 ----LKKALGKGREVVENA---KFCPKEDEPGLKRK-ERVDVEDGP-----------------------Q-EELIELISE 435 (733)
T ss_pred ----HHHHHhcccceeccc---cccccccccccccc-cchhhhhhh-----------------------h-Hhhhhcchh
Confidence 111111110000000 00000011100000 000000000 0 112333344
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
-...|.+|+|-++.+..+..+.+.|+..+.+++.+|+.....+|.+.++....-- ..+...++++|++..
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~----------~~~~~~IvVaTQVIE 505 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLF----------KQNEGFIVVATQVIE 505 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHH----------hccCCeEEEEeeEEE
Confidence 4577899999999999999999999988888999999999999999988654210 023347789999999
Q ss_pred cccCCCCCCeeEeeCCCCCcchHHHHhHhhhccC--CcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHh
Q 005858 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIG--QMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNV 488 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG--Q~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~v 488 (673)
.|+|+. .+.+|- |+ --.....||.||++|-| ....++||...-.+....+.++....+.......
T Consensus 506 agvDid-fd~mIT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 506 AGVDID-FDVLIT-EL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEEL 572 (733)
T ss_pred EEeccc-cCeeee-cC-CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccccc
Confidence 999987 555442 22 12567899999999999 5567888888888888888888887776544433
No 126
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.39 E-value=5.7e-12 Score=120.17 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCC--CeEE
Q 005858 39 PHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPK--LEVL 115 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~--~~v~ 115 (673)
|+|.+++.-+.. +.+.++..++|+|||..++..+......+ ....+||++|. .++.+-.+++.+++.. .++.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 899999877763 57899999999999999886665544444 44579999996 6788999999988854 6777
Q ss_pred EEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCc-ccH-HHH
Q 005858 116 RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNP-SSV-LYN 191 (673)
Q Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~-~s~-~~~ 191 (673)
.++|+..........+ ...++++|+|++.+...... ..-...++||+||+|.+-.. ... ...
T Consensus 77 ~~~~~~~~~~~~~~~~--------------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~ 142 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL--------------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKS 142 (169)
T ss_dssp EESTTSCHHHHHHHHH--------------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHH
T ss_pred cccccccccccccccc--------------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHH
Confidence 7777554322221111 12369999999999765443 22234799999999998653 222 333
Q ss_pred HHHhh--cCCCcEEEEecCCCCCCH
Q 005858 192 VLREH--FLMPRRLLMTGTPIQNNL 214 (673)
Q Consensus 192 ~l~~~--~~~~~rllLTGTPi~N~~ 214 (673)
.+... ....+.+++||||- .++
T Consensus 143 i~~~~~~~~~~~~i~~SAT~~-~~~ 166 (169)
T PF00270_consen 143 ILRRLKRFKNIQIILLSATLP-SNV 166 (169)
T ss_dssp HHHHSHTTTTSEEEEEESSST-HHH
T ss_pred HHHHhcCCCCCcEEEEeeCCC-hhH
Confidence 33321 12356899999996 443
No 127
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=3.6e-12 Score=130.75 Aligned_cols=315 Identities=20% Similarity=0.211 Sum_probs=200.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHH-HHHHhhhcCCCCCCEEEEECcc-cH---HHHHHHHHHHCCC
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS-FLSYLKFSQMSPGPFLVLCPLS-VT---DGWVSEMAKFTPK 111 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~-~i~~l~~~~~~~~~~LIV~P~s-ll---~~W~~E~~k~~p~ 111 (673)
+.|-|+..+.-+++ +...+-..-+|.|||..-+. ++..++......-+.||+.|.. +. .....++.++..-
T Consensus 44 ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~l 119 (529)
T KOG0337|consen 44 PTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKL 119 (529)
T ss_pred CCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccch
Confidence 45666666554333 24444445689999987553 3445544433344689999974 33 3345555565533
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccC--ccc
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKN--PSS 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN--~~s 187 (673)
-..+.++|+..... |..+ ...+|+|+.|+..+.... ..+.-....|||+||+.++-. ..-
T Consensus 120 r~s~~~ggD~~eeq------f~~l----------~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqe 183 (529)
T KOG0337|consen 120 RQSLLVGGDSIEEQ------FILL----------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQE 183 (529)
T ss_pred hhhhhcccchHHHH------HHHh----------ccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHH
Confidence 33445666654332 2221 124799999998775432 223444568999999999854 445
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
++.+.+...-.....+++|||- ++.+. .|...+. ..|
T Consensus 184 ql~e~l~rl~~~~QTllfSatl-p~~lv------~fakaGl------------------------------------~~p 220 (529)
T KOG0337|consen 184 QLHEILSRLPESRQTLLFSATL-PRDLV------DFAKAGL------------------------------------VPP 220 (529)
T ss_pred HHHHHHHhCCCcceEEEEeccC-chhhH------HHHHccC------------------------------------CCC
Confidence 6777777644456789999993 22111 1111000 001
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCe
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~k 347 (673)
++-|+ |+. .++.. .+. +..+......|...|..++..... ..+
T Consensus 221 -~lVRl--dve----------tkise----------------~lk-------~~f~~~~~a~K~aaLl~il~~~~~-~~~ 263 (529)
T KOG0337|consen 221 -VLVRL--DVE----------TKISE----------------LLK-------VRFFRVRKAEKEAALLSILGGRIK-DKQ 263 (529)
T ss_pred -ceEEe--ehh----------hhcch----------------hhh-------hheeeeccHHHHHHHHHHHhcccc-ccc
Confidence 11110 000 00000 000 000111123344455555554433 347
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
.+||+......+.+...|...|+.+..+.|++.+..|..-+.+|+ .+..-+|++|+.+..|++.+-
T Consensus 264 t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~--------------~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 264 TIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR--------------GRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred eeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc--------------CCccceEEEehhhhccCCCcc
Confidence 899999999999999999999999999999999999999999998 666678999999999999999
Q ss_pred CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 428 ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 428 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
.++||.||.|-.+..+..|.||+.|-|.+ -..|-+|+.
T Consensus 330 ldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~ 367 (529)
T KOG0337|consen 330 LDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAS 367 (529)
T ss_pred ccccccccCCCCCceEEEEecchhhcccc--ceEEEEEec
Confidence 99999999999999999999999998864 334555554
No 128
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.37 E-value=5.1e-11 Score=120.38 Aligned_cols=294 Identities=16% Similarity=0.195 Sum_probs=195.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeE
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEV 114 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v 114 (673)
+.||-|+.+++-... +..++|..++|-||++.--..+ + ...+-+|||||. +++..-.-.++....+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpa--l----~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPA--L----CADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhH--H----hcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 468899998875433 5789999999999998532211 1 145678999997 7777666777777766655
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc-------cccCCCccEEEEcCCccccC---
Q 005858 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG-------FLSQIPWCYTIIDEAQRLKN--- 184 (673)
Q Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~-------~l~~~~~~~vIvDEaH~~KN--- 184 (673)
+....++.........+ ..+...|.++-.|++.+.+... .+.-..|.++-+||.|.+..
T Consensus 164 lnansske~~k~v~~~i-----------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwgh 232 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAI-----------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH 232 (695)
T ss_pred ccCcccHHHHHHHHHHH-----------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCc
Confidence 55444444333222211 1245678999999998865432 23445678999999998743
Q ss_pred ---cccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHH
Q 005858 185 ---PSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 185 ---~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L 261 (673)
+.-+....+.+.++....++||||...+-+.+...++..-.. -.|..-|..+..
T Consensus 233 dfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------~tf~a~fnr~nl----------------- 289 (695)
T KOG0353|consen 233 DFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------FTFRAGFNRPNL----------------- 289 (695)
T ss_pred ccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh------heeecccCCCCc-----------------
Confidence 223344566666888889999999988877776666542100 011222221100
Q ss_pred HHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHH
Q 005858 262 KGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKL 341 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~ 341 (673)
+-.|. .-| +.--..+..+.+.+
T Consensus 290 ------------~yev~-----qkp-----------------------------------------~n~dd~~edi~k~i 311 (695)
T KOG0353|consen 290 ------------KYEVR-----QKP-----------------------------------------GNEDDCIEDIAKLI 311 (695)
T ss_pred ------------eeEee-----eCC-----------------------------------------CChHHHHHHHHHHh
Confidence 00000 001 11111233333322
Q ss_pred H--hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 342 Y--NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 342 ~--~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
. -.|..-||||-...-.+.+...|..+|+....++..+.+++|..+-..+- .+...+++.|-+.
T Consensus 312 ~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~--------------a~eiqvivatvaf 377 (695)
T KOG0353|consen 312 KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI--------------AGEIQVIVATVAF 377 (695)
T ss_pred ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc--------------ccceEEEEEEeee
Confidence 2 24677899999999999999999999999999999888888877666665 3344556677799
Q ss_pred ccccCCCCCCeeEeeCCCCCcchHHH
Q 005858 420 GVGLNLVAADTVIFYEQDWNPQVDKQ 445 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~~wnp~~~~Q 445 (673)
|.||+-+....||+-.+|-+-.+|-|
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999999
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=4.7e-10 Score=128.32 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=99.6
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
..|..++..-+..+...|..|||-|.+....+.|...|...|+++..++..-. +.-..+|..- +
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A---------------G 614 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA---------------G 614 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc---------------C
Confidence 46777788888888899999999999999999999999999999999887632 2223344332 4
Q ss_pred CcEEEEEeccccccccCCC--------CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHH
Q 005858 408 DAFVFMISTRAGGVGLNLV--------AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~ 477 (673)
..-.+.++|..+|.|.|+. +.=+||.-..+-|...+.|..||++|.|..=....|. |+|..++++
T Consensus 615 ~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 615 KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred CCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 5557889999999998865 3457888899999999999999999999865433332 345555543
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=2.8e-10 Score=127.04 Aligned_cols=384 Identities=17% Similarity=0.134 Sum_probs=214.2
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH----HHHHHHHHHH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT----DGWVSEMAKF 108 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~k~ 108 (673)
++..+++-|+-|..-|+ .|-|.-+.||-|||+++...+..... ..+.+.||+|+..+ .+|...+-++
T Consensus 75 lg~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL---~G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYAL---QGRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHH---cCCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 44567888998875553 36688889999999998866654432 34568999999777 4576666666
Q ss_pred CCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHh---------ccccccCCCccEEEEcCC
Q 005858 109 TPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLM---------DQGFLSQIPWCYTIIDEA 179 (673)
Q Consensus 109 ~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~---------~~~~l~~~~~~~vIvDEa 179 (673)
. ++.+....+...... ++..+ .+||+-+|-..|.- .....-+.+++++||||+
T Consensus 146 L-GLsvg~i~~~~~~~e--rr~aY---------------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEv 207 (764)
T PRK12326 146 L-GLTVGWITEESTPEE--RRAAY---------------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEA 207 (764)
T ss_pred c-CCEEEEECCCCCHHH--HHHHH---------------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecch
Confidence 5 677776666543222 22222 23555555443322 122334457899999999
Q ss_pred ccccCcccHHHHHHHhhcCCCcEEEEecCCCC-CCHHHHHHHHHHhCCCC-CC-----------C-hHHHHHHhhhhccC
Q 005858 180 QRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQ-NNLSELWALMHFCMPSV-FG-----------T-LNQFLSTFKDAVHS 245 (673)
Q Consensus 180 H~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~-N~~~El~~ll~~l~p~~-~~-----------~-~~~f~~~f~~~~~~ 245 (673)
..+-= -.++.-+++||.+-. +....++.+..-|.++. |. + -....+.+......
T Consensus 208 DSiLI------------DeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~l 275 (764)
T PRK12326 208 DSVLV------------DEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDL 275 (764)
T ss_pred hhhee------------ccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccc
Confidence 85311 134556888886532 22223333333333321 10 0 00122222111111
Q ss_pred CCcchhhhHHHHHHHHHHHHH-HHHhhhhhhhhhhcCCcc---------CCCcc---------------cccH----HHH
Q 005858 246 SSAPKRGKIKEQFTSLKGILS-AFMLRRTKQKLVECGHLM---------LPPLT---------------EITV----LQK 296 (673)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~~l~-~~~lrr~k~~v~~~~~~~---------lp~~~---------------e~~~----~Q~ 296 (673)
+... .....+..+...++ .+++.+.+..+...+.+. +|... ++++ .-.
T Consensus 276 y~~~---~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~As 352 (764)
T PRK12326 276 YSEE---HVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDT 352 (764)
T ss_pred cCcc---hhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeeh
Confidence 1110 00112233333333 334555555444322111 11100 0000 000
Q ss_pred HHHHHHHhh----------------hHHHHHhhc--ccccccccc--------ccccCCcHHHHHHHHHHHHhCCCeEEE
Q 005858 297 KVYASILRK----------------ELPKLLALS--SRTANHQSL--------QNTASGKLVVLDLLLKKLYNSGHRVLL 350 (673)
Q Consensus 297 ~~y~~~l~~----------------~~~~l~~~~--~~~~~~~~l--------~~~~s~Kl~~l~~ll~~~~~~g~kvlI 350 (673)
--|+.+.+. ++..+.... ..+.+.|.. ......|..++.+-+..+.+.|..|||
T Consensus 353 IT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLV 432 (764)
T PRK12326 353 ITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432 (764)
T ss_pred hhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 012221111 111111110 001111111 111455777888888888899999999
Q ss_pred EecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC----
Q 005858 351 FAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV---- 426 (673)
Q Consensus 351 Fsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~---- 426 (673)
.|.+....+.|...|...|+++..++..-. ++-..+|.+- +....+-++|..+|.|.|+.
T Consensus 433 gt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A---------------G~~gaVTIATNMAGRGTDIkLg~~ 496 (764)
T PRK12326 433 GTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA---------------GKYGAVTVSTQMAGRGTDIRLGGS 496 (764)
T ss_pred EeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc---------------CCCCcEEEEecCCCCccCeecCCC
Confidence 999999999999999999999999987633 3334444443 55557888999999998865
Q ss_pred -----------CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 427 -----------AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 427 -----------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
+.=+||.-+.+-|-..+.|..||++|+|..=....|. |+|..++.+-.
T Consensus 497 ~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 497 DEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred cccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcC
Confidence 3458888899999999999999999999865444332 34555554443
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.6e-09 Score=123.80 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=96.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..++.+-+..+.+.|..|||-+.+....+.|..+|...|+++..++-.-. ++-..+|.+ .
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~---------------A 494 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ---------------A 494 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc---------------C
Confidence 456888888888889999999999999999999999999999999887776533 233334432 2
Q ss_pred CCcEEEEEeccccccccCCC-------------------------------------CCCeeEeeCCCCCcchHHHHhHh
Q 005858 407 NDAFVFMISTRAGGVGLNLV-------------------------------------AADTVIFYEQDWNPQVDKQALQR 449 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~-------------------------------------~a~~VI~~D~~wnp~~~~Qa~gR 449 (673)
+..-.+-++|..+|.|.|+. +.=+||.-+.+-|-..+.|..||
T Consensus 495 G~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGR 574 (913)
T PRK13103 495 GRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGR 574 (913)
T ss_pred CCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccc
Confidence 55557788999999998864 34578888999999999999999
Q ss_pred hhccCCcCeEEEE
Q 005858 450 AHRIGQMNHVLSI 462 (673)
Q Consensus 450 ~~RiGQ~k~V~Vy 462 (673)
++|+|..=....|
T Consensus 575 aGRQGDPGsS~f~ 587 (913)
T PRK13103 575 AGRQGDPGSSRFY 587 (913)
T ss_pred cccCCCCCceEEE
Confidence 9999986444333
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=5e-09 Score=118.71 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHH-HHHhhccchhHhhhhhhcC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFA-AIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~-~i~~F~~~~~~~~~~~~~~ 405 (673)
...|..++.+-+..+...|..|||.|.+....+.|..+|...|+++..++.... ++.+ +|.+
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa~--------------- 470 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIAK--------------- 470 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHHh---------------
Confidence 457888888888888899999999999999999999999999999999987633 3333 3332
Q ss_pred CCCcEEEEEeccccccccCCCCCC--------eeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 406 GNDAFVFMISTRAGGVGLNLVAAD--------TVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL~~a~--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
.|....+.++|..+|.|.|+.-.. +||..+.+-|-..+.|..||++|.|..=....|
T Consensus 471 AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 471 AGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred CCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 255567888999999999977433 899999999999999999999999986444333
No 133
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.11 E-value=4.1e-09 Score=125.34 Aligned_cols=142 Identities=20% Similarity=0.138 Sum_probs=98.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~ 133 (673)
+.+|++-|-+|+|||++++-++..+..... ...+++|+-- -|-.|-.++|..+........ ...+...+++.+..
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~-~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~ 348 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPK-NPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLED 348 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccC-CCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhc
Confidence 457999999999999999999988876633 3336666664 566999999998875544332 33334444443321
Q ss_pred HHHhhhccCCCCCCCCCEEEecHHHHHhcccc----ccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCC
Q 005858 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF----LSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 134 ~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~----l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTP 209 (673)
. .-.++|||.+.|...... ......-+||+|||||- ....+.+.+...++...-+++||||
T Consensus 349 ~-------------~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~~a~~~gFTGTP 413 (962)
T COG0610 349 G-------------KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALKKAIFIGFTGTP 413 (962)
T ss_pred C-------------CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhccceEEEeeCCc
Confidence 1 346999999988655422 23445668999999994 3445666666667777789999999
Q ss_pred CCCCHH
Q 005858 210 IQNNLS 215 (673)
Q Consensus 210 i~N~~~ 215 (673)
+...-.
T Consensus 414 i~~~d~ 419 (962)
T COG0610 414 IFKEDK 419 (962)
T ss_pred cccccc
Confidence 965443
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.10 E-value=1.4e-08 Score=115.33 Aligned_cols=312 Identities=18% Similarity=0.242 Sum_probs=179.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCC--
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTP-- 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p-- 110 (673)
...|+..|+- |..+.. .|...-+..++|+|||.-.+.+..++...+ +.+++|+|+. ++.|-.+-+.++.+
T Consensus 80 G~~~ws~QR~---WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRV---WAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHH---HHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4578888887 443332 245555566899999998877777765433 6789999985 56888888988873
Q ss_pred ---CCeEEEEeCCh--HHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccc-cC
Q 005858 111 ---KLEVLRYVGER--EQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRL-KN 184 (673)
Q Consensus 111 ---~~~v~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~-KN 184 (673)
...++ ||+.- ..++.... .+ ..++||++|||-..+.+....+.+.+||+|+||...-+ |+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le----~i---------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALE----RI---------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHH----HH---------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhc
Confidence 33344 88762 22222222 22 34579999999999999999999999999999998864 32
Q ss_pred cccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 185 PSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 185 ~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
. +....+ +.|.|=|= -....-|.+..+ ...+. ..+...+++..
T Consensus 219 s--kNvDri---------L~LlGf~e-E~i~~a~~~~~l------------r~~~~-------------~~~~~~~~~e~ 261 (1187)
T COG1110 219 S--KNVDRL---------LRLLGFSE-EVIESAYELIKL------------RRKLY-------------GEKRAERVREE 261 (1187)
T ss_pred c--ccHHHH---------HHHcCCCH-HHHHHHHHHHHH------------HHHhh-------------hhhhHHHHHHH
Confidence 2 111111 11222210 000001111111 11111 01111222222
Q ss_pred HHH----HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccc-----cCCcHHHHH
Q 005858 265 LSA----FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT-----ASGKLVVLD 335 (673)
Q Consensus 265 l~~----~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~-----~s~Kl~~l~ 335 (673)
++. ...+|.+.-+.--.....-|. .....+|+.++.=.... ....+.|+ .+.-...+.
T Consensus 262 ~~~~e~~~~~~r~k~g~LvvsSATg~~r----g~R~~LfReLlgFevG~---------~~~~LRNIvD~y~~~~~~e~~~ 328 (1187)
T COG1110 262 LREVEREREKKRRKLGILVVSSATGKPR----GSRLKLFRELLGFEVGS---------GGEGLRNIVDIYVESESLEKVV 328 (1187)
T ss_pred HHHHHHHHHHhccCCceEEEeeccCCCC----CchHHHHHHHhCCccCc---------cchhhhheeeeeccCccHHHHH
Confidence 211 122222211100000000000 01334455544321111 11112222 223344455
Q ss_pred HHHHHHHhCCCeEEEEecC---chHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEE
Q 005858 336 LLLKKLYNSGHRVLLFAQM---TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVF 412 (673)
Q Consensus 336 ~ll~~~~~~g~kvlIFsq~---~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vl 412 (673)
++++.+ |.-.|||.+- ...++.|.++|+.+|++...++.. ....++.|. .|+..++
T Consensus 329 elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~-------------~GeidvL 387 (1187)
T COG1110 329 ELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFE-------------EGEVDVL 387 (1187)
T ss_pred HHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhc-------------cCceeEE
Confidence 556554 6678999988 788999999999999998888653 256789998 6788888
Q ss_pred EEecc---ccccccCCCC-CCeeEeeCCC
Q 005858 413 MISTR---AGGVGLNLVA-ADTVIFYEQD 437 (673)
Q Consensus 413 L~st~---agg~GiNL~~-a~~VI~~D~~ 437 (673)
+.... +.-.||||+. +.++||+..|
T Consensus 388 VGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 388 VGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEecccccceeecCCchhheeEEEEecCC
Confidence 87644 4557999997 9999999988
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.09 E-value=2.3e-08 Score=119.02 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=62.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHH-HHH---H
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVS-EMA---K 107 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~-E~~---k 107 (673)
.+.+.||+|.+.+..+...+..+..+++-.++|+|||+..+..+..+.. ..++++|.||+ .+..||.. ++. +
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3567999999988888888777888889999999999998877654433 34579999997 45688754 443 4
Q ss_pred HCC-CCeEEEEeCCh
Q 005858 108 FTP-KLEVLRYVGER 121 (673)
Q Consensus 108 ~~p-~~~v~~~~g~~ 121 (673)
.++ ++++....|..
T Consensus 319 ~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 319 ILNFKINAALIKGKS 333 (850)
T ss_pred HcCCCceEEEEEcch
Confidence 333 46666665543
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.03 E-value=5.3e-09 Score=119.98 Aligned_cols=72 Identities=28% Similarity=0.415 Sum_probs=58.1
Q ss_pred CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe-----eCCC---C--
Q 005858 369 KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF-----YEQD---W-- 438 (673)
Q Consensus 369 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~-----~D~~---w-- 438 (673)
.+.+...+.+++..+|...-+-|. .+...+++||....-|+||++ ++||+ |||. |
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~--------------~g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~e 671 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFA--------------DGHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTE 671 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHh--------------cCceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCcccc
Confidence 345677888999999999999998 555667899999999999985 55554 5554 4
Q ss_pred -CcchHHHHhHhhhccCC
Q 005858 439 -NPQVDKQALQRAHRIGQ 455 (673)
Q Consensus 439 -np~~~~Qa~gR~~RiGQ 455 (673)
+|....|..||++|.+-
T Consensus 672 lsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 672 LSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred CCHHHHHHHHhhcCCCcc
Confidence 58999999999999764
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.92 E-value=9e-08 Score=109.35 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=66.0
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCc-CHHHHHHHHHhhccchhHhhhhhhcC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSI-RAEERFAAIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~-~~~~R~~~i~~F~~~~~~~~~~~~~~ 405 (673)
...|..++.+-+....+.|..|||-|.+....+.|...|..+|+++..++... ..+.=..+|.+-
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A-------------- 471 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA-------------- 471 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--------------
Confidence 34577777777777889999999999999999999999999999999998863 223333445442
Q ss_pred CCCcEEEEEeccccccccCC
Q 005858 406 GNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL 425 (673)
|..-.+-++|..+|.|.|+
T Consensus 472 -G~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 472 -GRKGSITIATNMAGRGTDI 490 (870)
T ss_pred -CCCCcEEEeccccCCCcCe
Confidence 5555778899999999663
No 138
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.89 E-value=9.4e-09 Score=99.29 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCC--CEEEEECc-ccHHHHHHHHHHH---CCCCeEEEEeCChHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPG--PFLVLCPL-SVTDGWVSEMAKF---TPKLEVLRYVGEREQRRNIR 128 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~--~~LIV~P~-sll~~W~~E~~k~---~p~~~v~~~~g~~~~~~~~~ 128 (673)
|..+++....|.|||..-. +..+....+..+ .+||+|-. .+..|...|+.+| .|+.++.++.|.-..+....
T Consensus 79 gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee 156 (387)
T KOG0329|consen 79 GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE 156 (387)
T ss_pred cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH
Confidence 4456777788999997532 333333333333 36888886 5668888887655 59999999988754332211
Q ss_pred HHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCcccHHHHHHHhhc----CCCcE
Q 005858 129 RTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHF----LMPRR 202 (673)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~----~~~~r 202 (673)
.+++ -+++++.|+..+... ...+.-......|+|||..+... -...+-+...+ ..+..
T Consensus 157 -----~lk~----------~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~-lDMrRDvQEifr~tp~~KQv 220 (387)
T KOG0329|consen 157 -----LLKN----------CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ-LDMRRDVQEIFRMTPHEKQV 220 (387)
T ss_pred -----HHhC----------CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH-HHHHHHHHHHhhcCccccee
Confidence 1111 368999999987543 23344445678899999976431 11222233322 22344
Q ss_pred EEEecC
Q 005858 203 LLMTGT 208 (673)
Q Consensus 203 llLTGT 208 (673)
..+|+|
T Consensus 221 mmfsat 226 (387)
T KOG0329|consen 221 MMFSAT 226 (387)
T ss_pred eeeeee
Confidence 667777
No 139
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.89 E-value=8.4e-08 Score=107.85 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=95.7
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHHHC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAKFT 109 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k~~ 109 (673)
....++|-++|++|+..|.+ |..+++|..+-+|||++|=.+++.-. . ...+++.-.|-..+ .|=-++|+.-+
T Consensus 292 ~~~pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq-~--h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ-K--HMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH-h--hccceEecchhhhhccchHHHHHHhc
Confidence 45568899999999954433 68899999999999999765543221 1 12347888886545 55667887766
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc----cccccCCCccEEEEcCCccccCc
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD----QGFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~----~~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.+.. ...|+.. -.....++|+|-+++++- .+.+.. .+.||+||.|++.+.
T Consensus 365 ~Dvg--LlTGDvq----------------------inPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~ 418 (1248)
T KOG0947|consen 365 GDVG--LLTGDVQ----------------------INPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDV 418 (1248)
T ss_pred cccc--eeeccee----------------------eCCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccc
Confidence 6655 3455442 123457999999998763 233333 578999999998663
Q ss_pred c-cHHHHHHHhhcC-CCcEEEEecC
Q 005858 186 S-SVLYNVLREHFL-MPRRLLMTGT 208 (673)
Q Consensus 186 ~-s~~~~~l~~~~~-~~~rllLTGT 208 (673)
. ...+..+.-+++ ....|+||||
T Consensus 419 eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 419 ERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred cccccceeeeeeccccceEEEEecc
Confidence 2 234444332232 2345899999
No 140
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.6e-07 Score=109.43 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=99.1
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
....++|.|+|++++.-+ .+ +.+++++..+|+|||+.+-.++..-...+ ..++-..|. ++..|=.++|..-+
T Consensus 114 ~~~~F~LD~fQ~~a~~~L-er---~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 114 REYPFELDPFQQEAIAIL-ER---GESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred HhCCCCcCHHHHHHHHHH-hC---CCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHh
Confidence 346789999999998533 33 68999999999999999987776544333 337888994 67777778876544
Q ss_pred CCC--eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 110 PKL--EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p~~--~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.+. -+..+.|+.. -..+..++++|-+.+++-. +.........||+||.|.+...
T Consensus 187 gdv~~~vGL~TGDv~----------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~ 244 (1041)
T COG4581 187 GDVADMVGLMTGDVS----------------------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR 244 (1041)
T ss_pred hhhhhhccceeccee----------------------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc
Confidence 322 2233444332 1224568888889887632 2233345678999999999764
Q ss_pred c-cHHHHHHHhhcCC-CcEEEEecC
Q 005858 186 S-SVLYNVLREHFLM-PRRLLMTGT 208 (673)
Q Consensus 186 ~-s~~~~~l~~~~~~-~~rllLTGT 208 (673)
. ...+..+.-.++. -+.++||||
T Consensus 245 eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 245 ERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred ccchhHHHHHHhcCCCCcEEEEeCC
Confidence 3 3344433333443 377999999
No 141
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=7.7e-07 Score=101.44 Aligned_cols=157 Identities=18% Similarity=0.115 Sum_probs=107.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKL 112 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~ 112 (673)
...|-+-|..++.-+..........+|.-.+|+|||-.-+.++......+ +-+||++|. +++.|-...|+.-+. .
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~ 271 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-A 271 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-C
Confidence 35788999999998888752334679999999999999998888776444 568999996 889999999987774 6
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcc--ccCcccHHH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR--LKNPSSVLY 190 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~--~KN~~s~~~ 190 (673)
++.++|+.-...+... .+... ..+...+||-|...+..... +-.+|||||=|. +|..+..++
T Consensus 272 ~v~vlHS~Ls~~er~~-~W~~~----------~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 272 KVAVLHSGLSPGERYR-VWRRA----------RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ChhhhcccCChHHHHH-HHHHH----------hcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCc
Confidence 7777776443333221 11111 33456899998877633222 347999999997 454443322
Q ss_pred -----HHHHhhcCCCcEEEEecCCC
Q 005858 191 -----NVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 191 -----~~l~~~~~~~~rllLTGTPi 210 (673)
..++........++-||||-
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCC
Confidence 22333234455788899994
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=2.2e-07 Score=107.09 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=94.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..++..-+..+...|..|||-|.++...+.|.++|..+|+++..++.... +.-..+|.+-
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--------------- 673 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--------------- 673 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc---------------
Confidence 456888888888889999999999999999999999999999999888876533 2222334332
Q ss_pred CCcEEEEEeccccccccCCC--------CCCeeEeeCCCCCcchHHHHhHhhhccCCcCe
Q 005858 407 NDAFVFMISTRAGGVGLNLV--------AADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
|..-.+-|+|..+|.|-|+. +.=+||.-+.+-+...+.|..||++|.|..=.
T Consensus 674 G~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGs 733 (1112)
T PRK12901 674 GQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGS 733 (1112)
T ss_pred CCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCc
Confidence 45557788999999998876 45688889999999999999999999998643
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=9.3e-07 Score=103.35 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=56.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
+||.|++.+..+.+.+..+..+++-.++|+|||+.+|+.+.......+...+++..+.+ +-+.|-.+|+++.
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 49999999999999999999999999999999998887665443333223345555555 6679999999883
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=2.4e-06 Score=97.74 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=66.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCC-cCHHHHHHHHHhhccchhHhhhhhhcC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGS-IRAEERFAAIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~-~~~~~R~~~i~~F~~~~~~~~~~~~~~ 405 (673)
...|..++.+-+..+.+.|..|||-|......+.|...|...|+++..++.. ...+.-..+|.+-
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A-------------- 486 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA-------------- 486 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--------------
Confidence 3568888888888888999999999999999999999999999999999886 3333334455443
Q ss_pred CCCcEEEEEeccccccccCC
Q 005858 406 GNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL 425 (673)
|..-.+-++|..+|.|-|+
T Consensus 487 -G~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 487 -GRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred -CCCCcEEEeccCCCCCcCE
Confidence 4445677788888888553
No 145
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.67 E-value=1.8e-07 Score=94.93 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=115.6
Q ss_pred cCCCcHHHHHHHHHHHHHhc------CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYL------LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~------~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
.+.|-.-|+++|-+....+. .+.|.+|.|.+|.||..|+.++|......+. . +.|+|... .+...-.+.+.
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~-r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-K-RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-C-ceEEEECChhhhhHHHHHHH
Confidence 46789999999999987766 3568899999999999999999987755543 3 35777664 56666667776
Q ss_pred HHCCC-CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc-------ccccCC------C-c
Q 005858 107 KFTPK-LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ-------GFLSQI------P-W 171 (673)
Q Consensus 107 k~~p~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~-------~~l~~~------~-~ 171 (673)
...-. +.+... .. +.. ......+..|+.+||.++.... ..+.++ . -
T Consensus 113 DIG~~~i~v~~l--~~-------------~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfd 173 (303)
T PF13872_consen 113 DIGADNIPVHPL--NK-------------FKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFD 173 (303)
T ss_pred HhCCCcccceec--hh-------------hcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCC
Confidence 55422 222111 11 000 0012345689999999997652 222221 1 2
Q ss_pred cEEEEcCCccccCccc------HHHHH---HHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCC------CCCChHHHH
Q 005858 172 CYTIIDEAQRLKNPSS------VLYNV---LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPS------VFGTLNQFL 236 (673)
Q Consensus 172 ~~vIvDEaH~~KN~~s------~~~~~---l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~------~~~~~~~f~ 236 (673)
.+||+||||..||..+ +...+ +.+.++..+.+..|||.... .-+|-.+.+-+ .|.++.+|.
T Consensus 174 gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase----p~NmaYm~RLGLWG~gtpf~~~~~f~ 249 (303)
T PF13872_consen 174 GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE----PRNMAYMSRLGLWGPGTPFPDFDDFL 249 (303)
T ss_pred ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC----CceeeeeeeccccCCCCCCCCHHHHH
Confidence 4899999999999654 33333 44446677889999998743 12221111212 356777777
Q ss_pred HHhhh
Q 005858 237 STFKD 241 (673)
Q Consensus 237 ~~f~~ 241 (673)
+....
T Consensus 250 ~a~~~ 254 (303)
T PF13872_consen 250 EAMEK 254 (303)
T ss_pred HHHHh
Confidence 66654
No 146
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.63 E-value=5.4e-07 Score=104.17 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=80.6
Q ss_pred CCCeEEEEecCchHHHHHHHHHHh----CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLEL----RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
..+-+|||=.-....+...+.|.. ....++-++|..+.++..+++ +.. ..+.+-++++|..+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF---~p~-----------~~~~RKVVlATNIA 323 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVF---EPA-----------PGGKRKVVLATNIA 323 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhc---CCC-----------CCCcceEEEEcccc
Confidence 356899998888888888888876 346788899999998887754 433 24445589999999
Q ss_pred ccccCCCCCCeeEeeC----CCCCc--------------chHHHHhHhhhccCCcCeEEEEEEecCCCHH
Q 005858 420 GVGLNLVAADTVIFYE----QDWNP--------------QVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D----~~wnp--------------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiE 471 (673)
.++|++.+...||=-. +-||| +.-.||-|||+| +.+=..|||.+++..+
T Consensus 324 ETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 324 ETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 9999999988887321 22333 344566666666 6667789998875433
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.63 E-value=1.9e-05 Score=92.11 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=78.4
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
+...+.++|||...-.++..+.+.+...... .+...|..+ +...++.|... ++. .+++.+...
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~------------~~~-~~lv~~gsf 538 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKAS------------GEG-LILVGGGSF 538 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHh------------cCC-eEEEeeccc
Confidence 3345668999999889999999998876553 445555544 34889999854 222 788889999
Q ss_pred ccccCCCC--CCeeEeeCCCCC-c-----------------------------chHHHHhHhhhccCCcCeEEEE
Q 005858 420 GVGLNLVA--ADTVIFYEQDWN-P-----------------------------QVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 420 g~GiNL~~--a~~VI~~D~~wn-p-----------------------------~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
.+|||+.+ +..||+.-.|+= | ....|++||+.|--+.+.|.|.
T Consensus 539 ~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred cCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 99999997 789999988883 2 2345999999996666665543
No 148
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.60 E-value=3.5e-05 Score=92.57 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=58.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HH-HHHHH---HHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DG-WVSEM---AKF 108 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~-W~~E~---~k~ 108 (673)
..+.||-|.+-++.+...+..+...++-..+|+|||+.-+..+..+.. ...+|++|-+++..+ .| +.+++ .+.
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~--~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~ 332 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK--KKEEPVVISTYTIQLQQQLLEKDIPLLQKI 332 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh--ccCCeEEEEcCCHHHHHHHHHhhHHHHHHH
Confidence 468999999988888887777878888899999999988766644332 234677777776444 45 34443 444
Q ss_pred CC-CCeEEEEeCC
Q 005858 109 TP-KLEVLRYVGE 120 (673)
Q Consensus 109 ~p-~~~v~~~~g~ 120 (673)
++ ++++.+..|.
T Consensus 333 ~~~~~~~~~lKGr 345 (928)
T PRK08074 333 FPFPVEAALLKGR 345 (928)
T ss_pred cCCCceEEEEEcc
Confidence 43 4566655543
No 149
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.55 E-value=9e-06 Score=92.15 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=104.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHH-HH-CCC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMA-KF-TPK 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~-k~-~p~ 111 (673)
+.+-.+|.+-+ .....+..+++..++-.|||....-++....+.. ..+.++-|+|. +++.|-..++. +| ++.
T Consensus 510 F~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 33445676644 3334467899999999999999988887775544 56678999995 77788777764 33 232
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccC---CCccEEEEcCCccccCcc
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQ---IPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~---~~~~~vIvDEaH~~KN~~ 186 (673)
+.-.+.. .....+.. ...+..+.|+||-++.+....-. ..+ -+..++|+||.|.+.|..
T Consensus 585 ~~rg~sl---------~g~ltqEY-------sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~e 648 (1330)
T KOG0949|consen 585 FLRGVSL---------LGDLTQEY-------SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEE 648 (1330)
T ss_pred cccchhh---------HhhhhHHh-------cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccc
Confidence 2211110 00111110 01244678999999988654221 111 145799999999999854
Q ss_pred -cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHH
Q 005858 187 -SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMH 222 (673)
Q Consensus 187 -s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~ 222 (673)
+..+..+.. +-..-.++|||| .+|+..++-.++
T Consensus 649 d~l~~Eqll~-li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 649 DGLLWEQLLL-LIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred cchHHHHHHH-hcCCCeeEEecc--cCCHHHHHHHHH
Confidence 455555554 445567899999 577777776666
No 150
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.54 E-value=3.2e-07 Score=82.97 Aligned_cols=130 Identities=22% Similarity=0.124 Sum_probs=71.6
Q ss_pred CCCCeEEECCCcchHHHHHHHHH-HHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFL-SYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMY 132 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i-~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~ 132 (673)
+|.-.+|..-+|.|||...+--+ .... ...+.+||+.|.-++ .+|+.+...+..+. ++...-.+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvv---a~em~~aL~~~~~~-~~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVV---AEEMYEALKGLPVR-FHTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHH---HHHHHHHTTTSSEE-EESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHH---HHHHHHHHhcCCcc-cCceeeec--------
Confidence 34557888899999999877433 2221 234679999999766 34555555455433 32221110
Q ss_pred HHHHhhhccCCCCCCCCCEEEecHHHHHhc-cccccCCCccEEEEcCCccccCcccHHHH-HHHhhcCC--CcEEEEecC
Q 005858 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMD-QGFLSQIPWCYTIIDEAQRLKNPSSVLYN-VLREHFLM--PRRLLMTGT 208 (673)
Q Consensus 133 ~~~~~~~~~~~~~~~~~dvvI~tye~l~~~-~~~l~~~~~~~vIvDEaH~~KN~~s~~~~-~l~~~~~~--~~rllLTGT 208 (673)
......-+-+++|..+... .......+|+++|+||||.. ++.|-... .+...-.. ...++||||
T Consensus 68 -----------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 68 -----------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp --------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred -----------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 0223345788999887553 23444568999999999973 44444333 22221122 367899999
Q ss_pred CC
Q 005858 209 PI 210 (673)
Q Consensus 209 Pi 210 (673)
|-
T Consensus 136 PP 137 (148)
T PF07652_consen 136 PP 137 (148)
T ss_dssp -T
T ss_pred CC
Confidence 95
No 151
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.54 E-value=1.3e-06 Score=96.15 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
...++|-|+|..+|. ...++..+++..-+-.|||..|=.+| ..|+ ...+++.-.|- ++-.|=.+|+..-+
T Consensus 125 ~YPF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr----~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLR----EKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCCcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHH----hcCeEEeeChhhhhcchhHHHHHHHh
Confidence 445778999999884 44446789999999999999886444 4443 23457777885 55566677876544
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc----ccccCCCccEEEEcCCccccCc
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ----GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~----~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.+.-. ..|+-. -.....++|+|-++++.-. +..+ ....||+||.|+++..
T Consensus 197 ~DVGL--MTGDVT----------------------InP~ASCLVMTTEILRsMLYRGSEvmr--EVaWVIFDEIHYMRDk 250 (1041)
T KOG0948|consen 197 KDVGL--MTGDVT----------------------INPDASCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEIHYMRDK 250 (1041)
T ss_pred cccce--eeccee----------------------eCCCCceeeeHHHHHHHHHhccchHhh--eeeeEEeeeehhcccc
Confidence 34322 233321 1223578999999887532 2233 3456899999999874
Q ss_pred c-cHHHH-HHHhhcCCCcEEEEecC
Q 005858 186 S-SVLYN-VLREHFLMPRRLLMTGT 208 (673)
Q Consensus 186 ~-s~~~~-~l~~~~~~~~rllLTGT 208 (673)
. ...+. .+...-+..+-++||||
T Consensus 251 ERGVVWEETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 251 ERGVVWEETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred ccceeeeeeEEeccccceEEEEecc
Confidence 3 12222 22211234556899999
No 152
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.54 E-value=8.9e-07 Score=102.99 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=57.0
Q ss_pred cEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccC-----C---cCeEEEEEEecCCCHHHHHHHHHH
Q 005858 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIG-----Q---MNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 409 ~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG-----Q---~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
..-||+|-.|+.+|++.+.+-.+.-+...-+...-.|-+||+-|+. . ...+ +..+++..|.+.-.-.+|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHH
Confidence 6789999999999999999999999999899999999999999974 2 1346 6677787777666555444
No 153
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.50 E-value=2.7e-06 Score=94.04 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=107.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcC------CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLL------GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~------~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
.+-|-.-|+++|.|....+.. ..|.+|.|.-|.||-.+..++|......+ .++.|++.-. .+-..-.+.++
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchh
Confidence 355677899999998876542 23679999999998777666664442222 3456777544 45566677776
Q ss_pred HHC-CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--------ccccCC-Cc-----
Q 005858 107 KFT-PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--------GFLSQI-PW----- 171 (673)
Q Consensus 107 k~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--------~~l~~~-~~----- 171 (673)
... +++.|... ++-. +.. .+.......+-.|++.||..+.-.. ..|.++ .|
T Consensus 340 DigA~~I~V~al--nK~K--------Yak----Iss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f 405 (1300)
T KOG1513|consen 340 DIGATGIAVHAL--NKFK--------YAK----ISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF 405 (1300)
T ss_pred hcCCCCccceeh--hhcc--------ccc----ccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc
Confidence 655 33333221 1100 000 0001112334579999999885431 112111 22
Q ss_pred -cEEEEcCCccccC-------cccHHHH---HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCC------CCChHH
Q 005858 172 -CYTIIDEAQRLKN-------PSSVLYN---VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSV------FGTLNQ 234 (673)
Q Consensus 172 -~~vIvDEaH~~KN-------~~s~~~~---~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~------~~~~~~ 234 (673)
.+||+||||+.|| ..+++-+ -+...++..+++..|||-- .|--+|....+-++ |+++.+
T Consensus 406 eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~e 481 (1300)
T KOG1513|consen 406 EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEE 481 (1300)
T ss_pred ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHHH
Confidence 4899999999999 2233333 3444567778888999854 33334444444444 445666
Q ss_pred HHHHhh
Q 005858 235 FLSTFK 240 (673)
Q Consensus 235 f~~~f~ 240 (673)
|.....
T Consensus 482 Fi~AvE 487 (1300)
T KOG1513|consen 482 FIHAVE 487 (1300)
T ss_pred HHHHHH
Confidence 655444
No 154
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.49 E-value=5e-06 Score=96.73 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=51.8
Q ss_pred CCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcccH--HHHHHHhhcCCCcEEEEecCCCCC--CHHHHHHHHH
Q 005858 149 FDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSSV--LYNVLREHFLMPRRLLMTGTPIQN--NLSELWALMH 222 (673)
Q Consensus 149 ~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s~--~~~~l~~~~~~~~rllLTGTPi~N--~~~El~~ll~ 222 (673)
-.|++.|...+..|. +.+.--.+..|||||||++....+. ..+..+...+..+..++|+.|-.- ....+-.++.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 368999999998874 3344446789999999999654332 223333334556789999999763 4455666666
Q ss_pred HhC
Q 005858 223 FCM 225 (673)
Q Consensus 223 ~l~ 225 (673)
-|.
T Consensus 88 ~L~ 90 (814)
T TIGR00596 88 NLF 90 (814)
T ss_pred HhC
Confidence 553
No 155
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.48 E-value=8.1e-05 Score=88.02 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=50.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHH-HHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGW-VSEMA 106 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W-~~E~~ 106 (673)
..+.||-|.+-...+.+.+..+...++...+|+|||+.-+..+.... ...+++|.||+..+ .|- .+++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 46899999997777777777777788899999999998776543221 24679999998554 454 34544
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.47 E-value=6.7e-06 Score=93.30 Aligned_cols=316 Identities=18% Similarity=0.243 Sum_probs=164.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC-cccHHHHHHHHHHHC-CCCeEEEEeCChHHHHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP-LSVTDGWVSEMAKFT-PKLEVLRYVGEREQRRNIRRTMYEHV 135 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~k~~-p~~~v~~~~g~~~~~~~~~~~~~~~~ 135 (673)
.++-.+||+|||...+-++.... +.....+|||.= .+++.+-...|.+.. +++. .|....+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l--~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~------------ 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDAL--KNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDY------------ 115 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhc--cCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeeccccc------------
Confidence 46778999999998877665542 133455777754 577777777776543 2222 23222110
Q ss_pred HhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC----cc----cHHHHHHHhhc-CCCcEEEEe
Q 005858 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN----PS----SVLYNVLREHF-LMPRRLLMT 206 (673)
Q Consensus 136 ~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN----~~----s~~~~~l~~~~-~~~~rllLT 206 (673)
......++.+++..+.+.+....+- .+||+|||||+-..-+ +. ......+...+ .+++.|++-
T Consensus 116 -------~i~~~~~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~D 187 (824)
T PF02399_consen 116 -------IIDGRPYDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMD 187 (824)
T ss_pred -------cccccccCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEec
Confidence 0011247899999999977654421 2389999999754322 11 11222233222 467788888
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCC
Q 005858 207 GTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLP 286 (673)
Q Consensus 207 GTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp 286 (673)
||- . ..+..++.-++|+.--. -....|..+. ... -+-.++++...+..... .-|
T Consensus 188 A~l-n---~~tvdFl~~~Rp~~~i~--vI~n~y~~~~----fs~--------------R~~~~~~~l~~~~l~~~--~~~ 241 (824)
T PF02399_consen 188 ADL-N---DQTVDFLASCRPDENIH--VIVNTYASPG----FSN--------------RRCTFLRSLGTDTLAAA--LNP 241 (824)
T ss_pred CCC-C---HHHHHHHHHhCCCCcEE--EEEeeeecCC----ccc--------------ceEEEecccCcHHHHHH--hCC
Confidence 883 2 22333444455532100 0000000000 000 00011222221111000 000
Q ss_pred CcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH
Q 005858 287 PLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 287 ~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
+ .+- ...- ................+....+...++..+ ..|+++.|||......+++.+++.
T Consensus 242 ~-~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~ 303 (824)
T PF02399_consen 242 E-DEN---------------ADTS-PTPKHSPDPTATAAISNDETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCA 303 (824)
T ss_pred c-ccc---------------cccC-CCcCCCCccccccccccchhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHH
Confidence 0 000 0000 000000000000111233344555666655 679999999999999999999999
Q ss_pred hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC--CCeeEee--CCCCCcch
Q 005858 367 LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA--ADTVIFY--EQDWNPQV 442 (673)
Q Consensus 367 ~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~--a~~VI~~--D~~wnp~~ 442 (673)
..+..+..++|..+..+. +.+ +...| ++=|.+...|+++-. -|.|..| .....|..
T Consensus 304 ~~~~~Vl~l~s~~~~~dv----~~W---------------~~~~V-viYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~ 363 (824)
T PF02399_consen 304 RFTKKVLVLNSTDKLEDV----ESW---------------KKYDV-VIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDM 363 (824)
T ss_pred hcCCeEEEEcCCCCcccc----ccc---------------cceeE-EEEeceEEEEeccchhhceEEEEEecCCCCCCcH
Confidence 999999999887776522 222 33334 555567778888764 5666655 33344543
Q ss_pred --HHHHhHhhhccCCcCeEEEE
Q 005858 443 --DKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 443 --~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
..|.+||+..+... .+.||
T Consensus 364 ~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 364 VSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred HHHHHHHHHHHhhccC-eEEEE
Confidence 68999999887753 34444
No 157
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.43 E-value=6.6e-07 Score=92.61 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=87.3
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCC---CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRK---YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
.-.|+||||....-.|-|++++..+| |.++.++|.-.+.+|.+-++.|+ ....-||++|+++.
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk--------------k~dvkflictdvaa 569 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK--------------KFDVKFLICTDVAA 569 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh--------------hcCeEEEEEehhhh
Confidence 34699999999999999999998874 67899999999999999999998 55567999999999
Q ss_pred cccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc
Q 005858 421 VGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI 453 (673)
Q Consensus 421 ~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 453 (673)
.||++++...+|...+|-..++|.+|+||++|.
T Consensus 570 rgldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 570 RGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred ccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 999999999999999999999999999988773
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.41 E-value=0.00027 Score=82.72 Aligned_cols=183 Identities=17% Similarity=0.061 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHHHHh----cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC--C
Q 005858 37 LKPHQVEGLSWLIRRY----LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT--P 110 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~----~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~--p 110 (673)
=+-+|-.|++.+...- ..|.-++-...||+|||+.-.-+++.|.......+-++-+---++..|=.+++++-. .
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 3568988887765532 234446777899999999988888777543333332222223366677777776543 2
Q ss_pred CCeEEEEeCChHHHHHHHHHHH--HHHHhhhccC----------------------------------CCCCCCCCEEEe
Q 005858 111 KLEVLRYVGEREQRRNIRRTMY--EHVKEQSQMS----------------------------------NVSPLPFDVLLT 154 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~--~~~~~~~~~~----------------------------------~~~~~~~dvvI~ 154 (673)
+-...+..|+...+.-...... +.+....+.+ ........++|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 3345555666554432210000 0000000000 000112457888
Q ss_pred cHHHHHhcccccc---------CCCccEEEEcCCccccCcccHHHHHHHh--hcCCCcEEEEecCCCCCCHHHHHH
Q 005858 155 TYDVVLMDQGFLS---------QIPWCYTIIDEAQRLKNPSSVLYNVLRE--HFLMPRRLLMTGTPIQNNLSELWA 219 (673)
Q Consensus 155 tye~l~~~~~~l~---------~~~~~~vIvDEaH~~KN~~s~~~~~l~~--~~~~~~rllLTGTPi~N~~~El~~ 219 (673)
|.+.+......+. ..--..||+||.|-+-......-..+.. .....++++||||--+.-...|+.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 8887765432222 2223589999999874433222222221 124567899999976554444443
No 159
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.38 E-value=1.3e-05 Score=91.28 Aligned_cols=71 Identities=23% Similarity=0.214 Sum_probs=51.0
Q ss_pred cEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeC----CCCCcchHHHH
Q 005858 371 SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYE----QDWNPQVDKQA 446 (673)
Q Consensus 371 ~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D----~~wnp~~~~Qa 446 (673)
.+.+.+.+.+.++|.-+-..|+ .+...+++.|....-|+||++-..+|-.- ..-.--.|.|.
T Consensus 524 GvAyHhaGLT~eER~~iE~afr--------------~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFR--------------EGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred cceecccccccchHHHHHHHHH--------------hcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 3455666777889988888998 33444555666688999999766665432 22345689999
Q ss_pred hHhhhccCC
Q 005858 447 LQRAHRIGQ 455 (673)
Q Consensus 447 ~gR~~RiGQ 455 (673)
+||++|.|-
T Consensus 590 ~GRAGR~gi 598 (1008)
T KOG0950|consen 590 VGRAGRTGI 598 (1008)
T ss_pred hhhhhhccc
Confidence 999999984
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.5e-05 Score=89.25 Aligned_cols=367 Identities=19% Similarity=0.167 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH----HHHHHHHHHHCCC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT----DGWVSEMAKFTPK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~k~~p~ 111 (673)
..++-|+-|.- ..+.|.|.-+-||=|||+++...+.-.. ..++.+.||+.+.-+ ..|...+-.|. +
T Consensus 80 ~~~dVQliG~i------~lh~g~iaEM~TGEGKTL~atlp~ylna---L~gkgVhvVTvNdYLA~RDae~m~~l~~~L-G 149 (822)
T COG0653 80 RHFDVQLLGGI------VLHLGDIAEMRTGEGKTLVATLPAYLNA---LAGKGVHVVTVNDYLARRDAEWMGPLYEFL-G 149 (822)
T ss_pred ChhhHHHhhhh------hhcCCceeeeecCCchHHHHHHHHHHHh---cCCCCcEEeeehHHhhhhCHHHHHHHHHHc-C
Confidence 34556666532 2246889999999999999886664333 234557888876433 77999998888 5
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHH
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYN 191 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~ 191 (673)
+.+.+....-.. ..+...+ ............+||++--+ ++ ......-+.+..+.|+||+.-+-
T Consensus 150 lsvG~~~~~m~~--~ek~~aY---~~DItY~TnnElGFDYLRDN--m~-~~~ee~vqr~~~faIvDEvDSIL-------- 213 (822)
T COG0653 150 LSVGVILAGMSP--EEKRAAY---ACDITYGTNNELGFDYLRDN--MV-TSQEEKVQRGLNFAIVDEVDSIL-------- 213 (822)
T ss_pred CceeeccCCCCh--HHHHHHH---hcCceeccccccCcchhhhh--hh-ccHHHhhhccCCeEEEcchhhee--------
Confidence 555544332211 1111111 22222233344455554333 11 11111222367899999997541
Q ss_pred HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhC---CCC-CC-------------ChHHHHHHhhhhccCCCcchhhhH
Q 005858 192 VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCM---PSV-FG-------------TLNQFLSTFKDAVHSSSAPKRGKI 254 (673)
Q Consensus 192 ~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~---p~~-~~-------------~~~~f~~~f~~~~~~~~~~~~~~~ 254 (673)
.-.++-.+++|| |...+.........|+. +.. |. ....+.+.|.-. ..+. ...
T Consensus 214 ----IDEARtPLiISG-~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~-~Ly~----~en 283 (822)
T COG0653 214 ----IDEARTPLIISG-PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIE-NLYD----LEN 283 (822)
T ss_pred ----eeccccceeeec-ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcc-cccc----hhh
Confidence 124555799999 98888444444444442 221 11 123333444310 0000 011
Q ss_pred HHHHHHHHHHH-HHHHhhhhhhhhhhcCCc---------cCCCcccccHH-------------------HHHHHHHHHhh
Q 005858 255 KEQFTSLKGIL-SAFMLRRTKQKLVECGHL---------MLPPLTEITVL-------------------QKKVYASILRK 305 (673)
Q Consensus 255 ~~~~~~L~~~l-~~~~lrr~k~~v~~~~~~---------~lp~~~e~~~~-------------------Q~~~y~~~l~~ 305 (673)
...+..+...+ .+++..+.+..+...+-+ .+|-..--.-+ -.-.|+.+.+
T Consensus 284 ~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR- 362 (822)
T COG0653 284 VNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFR- 362 (822)
T ss_pred HHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHh-
Confidence 11222232222 334444444444332221 11110000000 0111222211
Q ss_pred hHHHHHhhc-------------------ccccccccc--------ccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHH
Q 005858 306 ELPKLLALS-------------------SRTANHQSL--------QNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTL 358 (673)
Q Consensus 306 ~~~~l~~~~-------------------~~~~~~~~l--------~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~l 358 (673)
..+.+.... ..+.+.|.+ -.....|..++..-+......|..|||-+.+....
T Consensus 363 ~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~S 442 (822)
T COG0653 363 LYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKS 442 (822)
T ss_pred hhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecc
Confidence 011111110 011111111 11145677888888888889999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC-CC--------
Q 005858 359 DILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA-AD-------- 429 (673)
Q Consensus 359 d~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~-a~-------- 429 (673)
+.+.+.|...|++...++-.-. .|.+-|-.+. +..-.+-++|..+|.|-++.- .+
T Consensus 443 E~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A--------------G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lG 506 (822)
T COG0653 443 ELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA--------------GQPGAVTIATNMAGRGTDIKLGGNPEFVMELG 506 (822)
T ss_pred hhHHHHHHhcCCCceeeccccH--HHHHHHHhhc--------------CCCCccccccccccCCcccccCCCHHHHHHhC
Confidence 9999999999999988876644 4444444443 455567789999999999874 33
Q ss_pred --eeEeeCCCCCcchHHHHhHhhhccCC
Q 005858 430 --TVIFYEQDWNPQVDKQALQRAHRIGQ 455 (673)
Q Consensus 430 --~VI~~D~~wnp~~~~Qa~gR~~RiGQ 455 (673)
+||--+-.-+-..+.|--||++|+|-
T Consensus 507 GL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 507 GLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred CcEEEecccchhhHHHHHhhcccccCCC
Confidence 46666677777788899999999993
No 161
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.35 E-value=6.1e-05 Score=83.06 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=81.2
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhC----CC----cEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELR----KY----SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS 415 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~----g~----~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s 415 (673)
...-+|||=.-....+...+.|... +- -+.-++|+.+.++..++ |... ..+.+-+++|
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~-----------p~g~RKvIls 322 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPA-----------PPGKRKVILS 322 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCC-----------CCCcceEEEE
Confidence 3347999988777776666666543 21 24678999999887665 4433 3678889999
Q ss_pred ccccccccCCCCCCeeEee----CCCCCc-----------chHHHHhHhhhccCCcCeEEEEEEecCCCH
Q 005858 416 TRAGGVGLNLVAADTVIFY----EQDWNP-----------QVDKQALQRAHRIGQMNHVLSINLVTEHTV 470 (673)
Q Consensus 416 t~agg~GiNL~~a~~VI~~----D~~wnp-----------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~Ti 470 (673)
|..+.+.|...+..+||=- -..||| ..-.||.-|++|-|-+.+..+|||.++.-.
T Consensus 323 TNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 323 TNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred cceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 9999999999988777621 123444 345567777777777889999999988755
No 162
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.35 E-value=1.5e-05 Score=92.35 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHHhC--CCeEEEEecCchHHHHHHHHHHhC-------CCcEEEEeCCcCHHHHHHHHHhhccchhHhhh
Q 005858 330 KLVVLDLLLKKLYNS--GHRVLLFAQMTQTLDILQDFLELR-------KYSYERLDGSIRAEERFAAIRHFSVQSAIERL 400 (673)
Q Consensus 330 Kl~~l~~ll~~~~~~--g~kvlIFsq~~~~ld~l~~~L~~~-------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~ 400 (673)
...++..++..+... ...+|||-.-...+..+.+.|... .+-+..++++++..+.+.++ +.+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF---~~p------ 466 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVF---KRP------ 466 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhc---CCC------
Confidence 444666666666543 468999998887777777777532 24567789999987777664 444
Q ss_pred hhhcCCCCcEEEEEeccccccccCCCCCCeeEe--------eCCCC----------CcchHHHHhHhhhccCCcCeEEEE
Q 005858 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF--------YEQDW----------NPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 401 ~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~--------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
..+.+-+|++|..+.++|+...+-+||- ||+.- +-++-.||.||++| ..+=..|
T Consensus 467 -----p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy 538 (924)
T KOG0920|consen 467 -----PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICY 538 (924)
T ss_pred -----CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeE
Confidence 3788899999999999999998776663 33322 23556788888887 6666788
Q ss_pred EEecCCC
Q 005858 463 NLVTEHT 469 (673)
Q Consensus 463 ~lv~~~T 469 (673)
++.+..-
T Consensus 539 ~L~~~~~ 545 (924)
T KOG0920|consen 539 HLYTRSR 545 (924)
T ss_pred Eeechhh
Confidence 8887653
No 163
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.34 E-value=1.4e-06 Score=88.36 Aligned_cols=93 Identities=28% Similarity=0.317 Sum_probs=76.4
Q ss_pred HHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCC-------Cee-EeeCCCCCcchHHHHhHhhhccCCcC
Q 005858 386 AAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA-------DTV-IFYEQDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 386 ~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a-------~~V-I~~D~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
...+.|+ ++...|+|+| +|||+||+||+- .+| |.+++||+.....|-.||+||-||..
T Consensus 52 ~e~~~F~-------------~g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFM-------------DGEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHh-------------CCCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567888 5666677775 999999999942 344 68999999999999999999999998
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCc
Q 005858 458 HVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDD 492 (673)
Q Consensus 458 ~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~ 492 (673)
+..+..+++.-..|.+......+|+....+...++
T Consensus 118 ~P~y~~l~t~~~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 118 APEYRFLVTDLPGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred CCEEEEeecCCHHHHHHHHHHHHHHhhccccccCc
Confidence 87666677777889999999999998887777654
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.32 E-value=3.9e-06 Score=87.15 Aligned_cols=77 Identities=23% Similarity=0.107 Sum_probs=55.0
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC---CCCEEEEECc-ccHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS---PGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~---~~~~LIV~P~-sll~~W~~E~~k 107 (673)
.++++.||.|.+-+..+...+..+..+++-.++|+|||+..+..+..+...... ..+++++++. +...+-..++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455667999999999888888889999999999999999988776433222222 1256777776 344554555555
Q ss_pred H
Q 005858 108 F 108 (673)
Q Consensus 108 ~ 108 (673)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.32 E-value=3.9e-06 Score=87.15 Aligned_cols=77 Identities=23% Similarity=0.107 Sum_probs=55.0
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC---CCCEEEEECc-ccHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS---PGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~---~~~~LIV~P~-sll~~W~~E~~k 107 (673)
.++++.||.|.+-+..+...+..+..+++-.++|+|||+..+..+..+...... ..+++++++. +...+-..++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455667999999999888888889999999999999999988776433222222 1256777776 344554555555
Q ss_pred H
Q 005858 108 F 108 (673)
Q Consensus 108 ~ 108 (673)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 166
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.31 E-value=1.4e-05 Score=80.12 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC-eEEECCCcchHHHHHHHHHHHhh-----hcCCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVN-VLLGDEMGLGKTLQAISFLSYLK-----FSQMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~-~iLade~GlGKTl~ai~~i~~l~-----~~~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
+|-+.|.+++..++.. .. +++..++|+|||.+..+++..+. ......+++||+||. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4789999999766554 45 89999999999988888887772 224566789999997 456777777766
No 167
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.19 E-value=1.8e-05 Score=81.95 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=89.1
Q ss_pred cCCcHHHHHHHHHHH-----HhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccch--hHhh
Q 005858 327 ASGKLVVLDLLLKKL-----YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQS--AIER 399 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~-----~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~--~~~~ 399 (673)
.|+|+.+|..++..+ ...+.+++|.|+...++|+++.+|..+++.|-|+.|..-..+....-..=+... ....
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~ 173 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNS 173 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccccc
Confidence 799999999999999 667789999999999999999999999999999999765433322210000000 0000
Q ss_pred hhhhcCCCCcEEEEEeccccccc----cCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHH
Q 005858 400 LYSEAGGNDAFVFMISTRAGGVG----LNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIM 475 (673)
Q Consensus 400 ~~~~~~~~~~~vlL~st~agg~G----iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~ 475 (673)
...........++|+++.-.... ++-...+.||-||+.+++....-..-|.....+ +.+-|++|+..+|+|-.++
T Consensus 174 ~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L 252 (297)
T PF11496_consen 174 KKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIEL 252 (297)
T ss_dssp --------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHH
T ss_pred ccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHH
Confidence 00001124556777776644331 233357999999999999876554444433333 8899999999999999887
Q ss_pred HHHHHH
Q 005858 476 RRAERK 481 (673)
Q Consensus 476 ~~~~~K 481 (673)
..-..+
T Consensus 253 ~~~~~~ 258 (297)
T PF11496_consen 253 CFPKSS 258 (297)
T ss_dssp HHTTTS
T ss_pred HccCcc
Confidence 766533
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.08 E-value=4.9e-05 Score=86.18 Aligned_cols=78 Identities=17% Similarity=0.105 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC-----CCCeE
Q 005858 41 QVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT-----PKLEV 114 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~-----p~~~v 114 (673)
|.+-+.++...+..+...++-..+|+|||+..+..+..+.... ..+++||.+|+ .+..|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7777888888888788888999999999998877664433211 24679999997 66789988876554 24555
Q ss_pred EEEeC
Q 005858 115 LRYVG 119 (673)
Q Consensus 115 ~~~~g 119 (673)
....|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55544
No 169
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.97 E-value=0.0012 Score=74.75 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=83.2
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HH-------HHHHH-HHHCCC--CeEEEEeCChHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DG-------WVSEM-AKFTPK--LEVLRYVGEREQRR 125 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~-------W~~E~-~k~~p~--~~v~~~~g~~~~~~ 125 (673)
++=+-+|||+|||.+-+-.+..|....+..+ ++||||...+ .. -.+.| ..++.+ +..++|. ....+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~K-FIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~-~~~~~~ 153 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFK-FIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD-EDIEKF 153 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCcee-EEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-hHHHHH
Confidence 4557789999999999999999987777666 8999997333 11 22233 344443 3344443 111111
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc---cccccC-------------CC-------ccEEEEcCCccc
Q 005858 126 NIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD---QGFLSQ-------------IP-------WCYTIIDEAQRL 182 (673)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~---~~~l~~-------------~~-------~~~vIvDEaH~~ 182 (673)
.. .....+.+++++.+.+.++ ...+.+ .. --.|||||.|++
T Consensus 154 ~~----------------~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f 217 (985)
T COG3587 154 KF----------------KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRF 217 (985)
T ss_pred hh----------------ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhc
Confidence 10 1234467888888877665 211110 11 138999999999
Q ss_pred cCcccHHHHHHHhhcCCCcEEEEecC
Q 005858 183 KNPSSVLYNVLREHFLMPRRLLMTGT 208 (673)
Q Consensus 183 KN~~s~~~~~l~~~~~~~~rllLTGT 208 (673)
... .+.+.++.. +.+...+=.+||
T Consensus 218 ~~~-~k~~~~i~~-l~pl~ilRfgAT 241 (985)
T COG3587 218 LGD-DKTYGAIKQ-LNPLLILRFGAT 241 (985)
T ss_pred ccc-hHHHHHHHh-hCceEEEEeccc
Confidence 875 677777776 777777778888
No 170
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.91 E-value=0.00027 Score=77.68 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=76.9
Q ss_pred CeEEEEecCc----hHHHHHHHHHHhC------CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe
Q 005858 346 HRVLLFAQMT----QTLDILQDFLELR------KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS 415 (673)
Q Consensus 346 ~kvlIFsq~~----~~ld~l~~~L~~~------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s 415 (673)
.-+|||-.-. .+.++|.+.|... ++.+.-|+...+..-..++ |+.. .++.+-++++
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a-----------~~~vRK~IvA 629 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKA-----------EGGVRKCIVA 629 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccC-----------CCCceeEEEe
Confidence 3566775322 3455565555422 5678888888887766555 4433 3888899999
Q ss_pred ccccccccCCCCCCeeEeeC----CCCCc-----------chHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHH
Q 005858 416 TRAGGVGLNLVAADTVIFYE----QDWNP-----------QVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIM 475 (673)
Q Consensus 416 t~agg~GiNL~~a~~VI~~D----~~wnp-----------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~ 475 (673)
|..+.+.|.+.+...||=.. ..+|| ..-.||.-|++|.|.+.+-..||+.++.+....++
T Consensus 630 TNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 630 TNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 99999999999988887432 12333 23334444555555577778999999988776655
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.79 E-value=0.00037 Score=70.89 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=77.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH----HHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT----DGWVSEMAK 107 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~k 107 (673)
.+...+++-|.-|+--| ..|-|.-..+|=|||+++..++..... ..+++=||+.+..+ .+|...|-+
T Consensus 73 ~~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HTS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 34566788888887444 246699999999999998765544432 34678888888766 568888877
Q ss_pred HCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc---------cccccCCCccEEEEcC
Q 005858 108 FTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD---------QGFLSQIPWCYTIIDE 178 (673)
Q Consensus 108 ~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~---------~~~l~~~~~~~vIvDE 178 (673)
++ ++.+.......... .++..+. .||+-+|-..+..| .......+++++||||
T Consensus 144 ~L-Glsv~~~~~~~~~~--~r~~~Y~---------------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDE 205 (266)
T PF07517_consen 144 FL-GLSVGIITSDMSSE--ERREAYA---------------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDE 205 (266)
T ss_dssp HT-T--EEEEETTTEHH--HHHHHHH---------------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECT
T ss_pred Hh-hhccccCccccCHH--HHHHHHh---------------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEec
Confidence 77 67766665544321 1222232 58988888877553 1222245789999999
Q ss_pred Cccc
Q 005858 179 AQRL 182 (673)
Q Consensus 179 aH~~ 182 (673)
+..+
T Consensus 206 vDs~ 209 (266)
T PF07517_consen 206 VDSI 209 (266)
T ss_dssp HHHH
T ss_pred cceE
Confidence 8754
No 172
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.72 E-value=0.0023 Score=70.61 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=67.6
Q ss_pred CCeEEEEecCchHHHHHH----HHHHhC-----CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe
Q 005858 345 GHRVLLFAQMTQTLDILQ----DFLELR-----KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS 415 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~----~~L~~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s 415 (673)
..-+|||-.-....+... +.+... .+-++-|+...+.+...+++ ..- ..+.+-+++.
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF---ePt-----------P~gaRKVVLA 538 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF---EPT-----------PPGARKVVLA 538 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc---CCC-----------CCCceeEEEe
Confidence 356788865444333333 333222 23467788999987766654 332 3667788889
Q ss_pred ccccccccCCCCCCeeEeeCCC------CCc--------------chHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 416 TRAGGVGLNLVAADTVIFYEQD------WNP--------------QVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 416 t~agg~GiNL~~a~~VI~~D~~------wnp--------------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
|..+.+.|.+.+...|| ||. +|| +.-.||.||++|.|-- ..|||.+..
T Consensus 539 TNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG---KCfRLYt~~ 606 (902)
T KOG0923|consen 539 TNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG---KCFRLYTAW 606 (902)
T ss_pred ecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC---ceEEeechh
Confidence 99999999988887776 333 343 4567888888887655 456666643
No 173
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00016 Score=80.74 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=44.4
Q ss_pred CCCcEEEEEeccccccccCCCCCCeeEe--------e---------CCCC-CcchHHHHhHhhhccCCcCeEEEEEEec
Q 005858 406 GNDAFVFMISTRAGGVGLNLVAADTVIF--------Y---------EQDW-NPQVDKQALQRAHRIGQMNHVLSINLVT 466 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL~~a~~VI~--------~---------D~~w-np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~ 466 (673)
..+.+.++++|.++.+.|++++..+||= | ..+| +-+.-.||.|||+|+|-- +.|||..
T Consensus 627 p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG---HcYRLYS 702 (1172)
T KOG0926|consen 627 PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG---HCYRLYS 702 (1172)
T ss_pred CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC---ceeehhh
Confidence 4778899999999999999999888873 2 3344 455667999999998754 5666654
No 174
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.62 E-value=0.00017 Score=77.75 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=77.7
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~ 421 (673)
..|+=|+-||...- =.+...++.+|.. ++.|+|+.+++.|.+--..||++ ++..-+|+.|+|.|-
T Consensus 356 k~GDCvV~FSkk~I--~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~------------~~e~dvlVAsDAIGM 421 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDI--FTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDP------------SNECDVLVASDAIGM 421 (700)
T ss_pred CCCCeEEEeehhhH--HHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCC------------CCccceEEeeccccc
Confidence 46777788876432 2344556666666 99999999999999999999977 445566788899999
Q ss_pred ccCCCCCCeeEeeCCC---------CCcchHHHHhHhhhccCCcC
Q 005858 422 GLNLVAADTVIFYEQD---------WNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 422 GiNL~~a~~VI~~D~~---------wnp~~~~Qa~gR~~RiGQ~k 457 (673)
|+|| +.++|||++.- -......|--|||+|.|..-
T Consensus 422 GLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 422 GLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred cccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9998 47888998764 34567789999999998754
No 175
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.54 E-value=0.00056 Score=75.18 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=62.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc-HHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV-TDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~k~~p~~~ 113 (673)
.+|-..|..||...+.+ .-.||..++|+|||.++.+++..+... ..+|+||++|..+ ++|-...|.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~r----plsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR----PLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHcC----CceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 46788999999888775 678999999999999999999888665 4689999999865 588888887654 66
Q ss_pred EEEEe
Q 005858 114 VLRYV 118 (673)
Q Consensus 114 v~~~~ 118 (673)
|+...
T Consensus 481 VvRl~ 485 (935)
T KOG1802|consen 481 VVRLC 485 (935)
T ss_pred Eeeee
Confidence 66553
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.48 E-value=0.0011 Score=66.49 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeE
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEV 114 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v 114 (673)
..+-..|...+.++.. +..+++.-+.|+|||+.++++.......+ ....++|+=|. +-. .|.-.|.|
T Consensus 58 ~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~-v~~---ge~LGfLP---- 124 (262)
T PRK10536 58 LARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPV-LQA---DEDLGFLP---- 124 (262)
T ss_pred cCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCC-CCc---hhhhCcCC----
Confidence 3456688888876654 35788889999999999999988653333 23333333332 211 23333333
Q ss_pred EEEeCChHHH-HHHHHHHHHHHHhhhccCC----CCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH
Q 005858 115 LRYVGEREQR-RNIRRTMYEHVKEQSQMSN----VSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189 (673)
Q Consensus 115 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~ 189 (673)
|+..++ ...-.-+++.+........ .....-.+-|.+...++- ..+.-++||||||+++.- ...
T Consensus 125 ----G~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaqn~~~--~~~ 193 (262)
T PRK10536 125 ----GDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQNVTA--AQM 193 (262)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcC-----CcccCCEEEEechhcCCH--HHH
Confidence 222111 1111111221111000000 000011244554444322 123458999999998743 333
Q ss_pred HHHHHhhcCCCcEEEEecCCCCCCH
Q 005858 190 YNVLREHFLMPRRLLMTGTPIQNNL 214 (673)
Q Consensus 190 ~~~l~~~~~~~~rllLTGTPi~N~~ 214 (673)
...+ ..+....+++++|-|-|.++
T Consensus 194 k~~l-tR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 194 KMFL-TRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHH-hhcCCCCEEEEeCChhhccC
Confidence 3344 44788889999999976653
No 177
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.39 E-value=0.00061 Score=73.42 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=93.3
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH----hCCC----cEEEEeCCcCHHHHHHHHHhhccchhHh
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE----LRKY----SYERLDGSIRAEERFAAIRHFSVQSAIE 398 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~----~~g~----~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 398 (673)
.+.|..-...++.++.-.|-|+|-||..+...+.+....+ ..|- .+..+.|+-..++|.++-.+.-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F------ 580 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF------ 580 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh------
Confidence 4566667777888888899999999999887776654432 2222 1344678889999999876654
Q ss_pred hhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 399 RLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 399 ~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
++...-+++|.|...||++-..|.|+++.-|.+-+++.|-.||++|-+..
T Consensus 581 --------~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 581 --------GGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred --------CCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 56667789999999999999999999999999999999999999997654
No 178
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.36 E-value=0.0068 Score=64.72 Aligned_cols=64 Identities=28% Similarity=0.312 Sum_probs=48.0
Q ss_pred CCCcEEEEEeccccccccCCCCCCeeEeeCCC------CC-----------cchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQD------WN-----------PQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~------wn-----------p~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
+...+-+++||..+...+.+.+..+|| ||. +| |..-.||..|++|.|.+++-..|+|.++.
T Consensus 310 ~~~~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~ 387 (699)
T KOG0925|consen 310 GAYGRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEE 387 (699)
T ss_pred CCccceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHH
Confidence 344567889999999888887766655 433 34 45566888899999999999999999876
Q ss_pred CHH
Q 005858 469 TVE 471 (673)
Q Consensus 469 TiE 471 (673)
..+
T Consensus 388 ~~~ 390 (699)
T KOG0925|consen 388 AFE 390 (699)
T ss_pred hhh
Confidence 443
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.33 E-value=0.0028 Score=69.55 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=52.7
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc-HHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV-TDGWVSE 104 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl-l~~W~~E 104 (673)
..+...|-+.|+.++.+.... ..-.++..++|+|||.+..-++..+...+ +.+||.+|..+ +.|..+.
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~---k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINN---KDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccCCccccHHHHHHHHHHhcc---CCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 345677899999999988765 24577888999999999999888775433 66899999864 5777664
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.28 E-value=0.002 Score=62.96 Aligned_cols=154 Identities=20% Similarity=0.234 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEE
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLR 116 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~ 116 (673)
+-+.|...++-|.. ..-.++....|+|||+.|++.+..+... +....++|+-|..-. .+++ -|.|
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~---~~~l-Gflp------ 69 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEA---GEDL-GFLP------ 69 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--T---T-----SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCC---cccc-ccCC------
Confidence 45789999987774 3678888999999999999998877655 445556666665422 2222 1111
Q ss_pred EeCChHHHHH-HHHHHHHHHHhhhccCC--CCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHH
Q 005858 117 YVGEREQRRN-IRRTMYEHVKEQSQMSN--VSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193 (673)
Q Consensus 117 ~~g~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l 193 (673)
|+...+-. ...-+++.+........ .......+-+.+...++- ..+...+||||||+++.. ......+
T Consensus 70 --G~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~--~~~k~il 140 (205)
T PF02562_consen 70 --GDLEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP--EELKMIL 140 (205)
T ss_dssp ----------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCH--HHHHHHH
Confidence 11111000 00011111100000000 000001233333222211 233458999999998632 2233344
Q ss_pred HhhcCCCcEEEEecCCCCCCHH
Q 005858 194 REHFLMPRRLLMTGTPIQNNLS 215 (673)
Q Consensus 194 ~~~~~~~~rllLTGTPi~N~~~ 215 (673)
..+....+++++|-|-|.+..
T Consensus 141 -TR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 141 -TRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -TTB-TT-EEEEEE--------
T ss_pred -cccCCCcEEEEecCceeecCC
Confidence 347778899999999876544
No 181
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.18 E-value=0.0053 Score=60.01 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
+|-+-|++++..++.. ..+-.+|.-..|+|||.....+...+... ..++++++|.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHH
Confidence 4788999999988764 12346777899999999877766666443 2568999998644
No 182
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.08 E-value=0.004 Score=71.79 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=56.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc-HHHHHHHHHHHCCCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV-TDGWVSEMAKFTPKL 112 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~k~~p~~ 112 (673)
...|-+.|+.+|.+.+.. ....++..++|+|||.+++.++..+...+ .++||++|.+. +.+....+... +.
T Consensus 155 ~~~ln~~Q~~Av~~~l~~---~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~--~~ 226 (637)
T TIGR00376 155 DPNLNESQKEAVSFALSS---KDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC--DQ 226 (637)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC--CC
Confidence 357899999999876543 35688999999999999999988775433 36999999854 57777777653 34
Q ss_pred eEEEE
Q 005858 113 EVLRY 117 (673)
Q Consensus 113 ~v~~~ 117 (673)
+++..
T Consensus 227 ~vvRl 231 (637)
T TIGR00376 227 KIVRL 231 (637)
T ss_pred cEEEe
Confidence 44433
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.04 E-value=0.0055 Score=70.61 Aligned_cols=128 Identities=15% Similarity=-0.011 Sum_probs=86.2
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccC
Q 005858 64 MGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMS 142 (673)
Q Consensus 64 ~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (673)
.|+|||-..+.++......+ +.+||++|. +++.|+...|+..++...+.++|+.-......+.. ..+
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w--~~~------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRW--LAV------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHH--HHH-------
Confidence 59999999999988776543 458999997 78899999999998766788888765544433321 111
Q ss_pred CCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcc--ccCcccHHH-----HHHHhhcCCCcEEEEecCCC
Q 005858 143 NVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR--LKNPSSVLY-----NVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 143 ~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~--~KN~~s~~~-----~~l~~~~~~~~rllLTGTPi 210 (673)
..+...|||-|...+..- --+..+|||||=|. +|...+..+ ..++........++-|+||-
T Consensus 237 --~~G~~~IViGtRSAvFaP-----~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 237 --LRGQARVVVGTRSAVFAP-----VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred --hCCCCcEEEEcceeEEec-----cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 234568999997765221 22458999999996 454332221 22332234455678899994
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.01 E-value=0.0029 Score=67.96 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=33.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH-HHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW-VSEMA 106 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W-~~E~~ 106 (673)
.++--..|+|||+.++.++..+.... .....+++|+...+.+. ...+.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecchHHHHHHHHHh
Confidence 46667899999999999998882222 33457888887655443 33443
No 185
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.97 E-value=0.052 Score=62.89 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=87.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..|-.-|+.|+...+.. ..-.++-.-+|+|||.+.+.++..|...+ +.+|+.+=+ +.++|.---+..+. +.
T Consensus 668 ~~LN~dQr~A~~k~L~a---edy~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~--i~ 739 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA---EDYALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFG--IY 739 (1100)
T ss_pred hhcCHHHHHHHHHHHhc---cchheeecCCCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccC--cc
Confidence 47888999998766544 22345555579999999999998886544 557777765 56788766665544 22
Q ss_pred EEEEeCChHH-HHHHHHHH---------HHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcccc
Q 005858 114 VLRYVGEREQ-RRNIRRTM---------YEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLK 183 (673)
Q Consensus 114 v~~~~g~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~K 183 (673)
++. .|.... .+.+++.. +..+.. ......+|.+|- +.-....|....|||+|||||-.+-
T Consensus 740 ~lR-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~-------~~~~~~IVa~TC--lgi~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 740 ILR-LGSEEKIHPDVEEFTLTNETSEKSYADLKK-------FLDQTSIVACTC--LGINHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred eee-cCCccccchHHHHHhcccccchhhHHHHHH-------HhCCCcEEEEEc--cCCCchhhhccccCEEEEccccccc
Confidence 222 233222 12222211 000000 112234555542 2222344666779999999998765
Q ss_pred CcccHHHHHHHhhcCCCcEEEEecCCCC
Q 005858 184 NPSSVLYNVLREHFLMPRRLLMTGTPIQ 211 (673)
Q Consensus 184 N~~s~~~~~l~~~~~~~~rllLTGTPi~ 211 (673)
-+-+. - -+...+++.|-|-+.|
T Consensus 810 lP~~L-----g-PL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 810 LPLCL-----G-PLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cchhh-----h-hhhhcceEEEeccccc
Confidence 44321 1 1334567788887654
No 186
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.87 E-value=0.0045 Score=70.65 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred ccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHH
Q 005858 28 AAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS 74 (673)
Q Consensus 28 ~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~ 74 (673)
..|..+.+++||-|+.-+..++.......+|+|-+++|+|||+.-|+
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 45677788999999999999998888888999999999999997553
No 187
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.85 E-value=0.0062 Score=60.10 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=56.9
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
-++.+||-|.+.+..|.+. ..+.+.++-.-||-|||-+.+=++..+...+ . +=+-+|+|++++.+-..-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~-~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADG-S-RLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCC-C-cEEEEEcCHHHHHHHHHHHHHH
Confidence 4577999999999888864 4577899999999999999887777665333 2 2367888999998887777543
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.84 E-value=0.004 Score=59.21 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=54.3
Q ss_pred HHhCCCeEEEEecCchHHHHHHHHHHhCC----CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEec
Q 005858 341 LYNSGHRVLLFAQMTQTLDILQDFLELRK----YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIST 416 (673)
Q Consensus 341 ~~~~g~kvlIFsq~~~~ld~l~~~L~~~g----~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st 416 (673)
+...++++|||+..-..++.+.+.+...+ +.+ ...+ ..++..+++.|.. +...+|+++
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---~~~~~~~l~~~~~--------------~~~~il~~v 66 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---SKSRDELLEEFKR--------------GEGAILLAV 66 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---CCHHHHHHHHHCC--------------SSSEEEEEE
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---cchHHHHHHHHHh--------------ccCeEEEEE
Confidence 34566899999999999999999887653 332 2222 3478889999983 333566666
Q ss_pred c--ccccccCCCC--CCeeEeeCCCC
Q 005858 417 R--AGGVGLNLVA--ADTVIFYEQDW 438 (673)
Q Consensus 417 ~--agg~GiNL~~--a~~VI~~D~~w 438 (673)
. ...+|||+.. +..||+...|+
T Consensus 67 ~~g~~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 67 AGGSFSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp TTSCCGSSS--ECESEEEEEEES---
T ss_pred ecccEEEeecCCCchhheeeecCCCC
Confidence 6 8999999996 88999999887
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.81 E-value=0.0016 Score=58.81 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=60.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEEECccc-HHHHHHHHHHHCC-CCeEEEEeCChHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVLCPLSV-TDGWVSEMAKFTP-KLEVLRYVGEREQRRNIRR 129 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV~P~sl-l~~W~~E~~k~~p-~~~v~~~~g~~~~~~~~~~ 129 (673)
++.+++..+.|+|||..+-.++..+.... ....-+.+-||... ...+..++..... .... ......+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHHHH
Confidence 45678888999999999999888774321 11122334455433 4555555543331 1110 111112222
Q ss_pred HHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhc-CCCcEEEEecC
Q 005858 130 TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHF-LMPRRLLMTGT 208 (673)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~-~~~~rllLTGT 208 (673)
.+.+.+ ....-.+|||||+|++. +......+.... ...-.++++||
T Consensus 78 ~~~~~l-------------------------------~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 78 LLIDAL-------------------------------DRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HHHHHH-------------------------------HHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEES
T ss_pred HHHHHH-------------------------------HhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEC
Confidence 222221 11222688999999984 244445554433 44557999999
Q ss_pred C
Q 005858 209 P 209 (673)
Q Consensus 209 P 209 (673)
|
T Consensus 125 ~ 125 (131)
T PF13401_consen 125 P 125 (131)
T ss_dssp S
T ss_pred h
Confidence 9
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.53 E-value=0.028 Score=65.86 Aligned_cols=136 Identities=21% Similarity=0.165 Sum_probs=81.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCC
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKL 112 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~ 112 (673)
....|.+-|++++..+.. ++-.+|....|+|||.++-+++..+...+ ...++++++|.........+. . +.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e~---~-g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGEV---T-GL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHHh---c-CC
Confidence 457799999999987653 45789999999999998888877665432 225688889987665443332 1 10
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNV 192 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~ 192 (673)
.. ..+... ... . .+... . ... -.....++||||||+.+-.. .....
T Consensus 391 ~a----------~Tih~l-L~~----------~---~~~~~-----~-~~~--~~~~~~~llIvDEaSMvd~~--~~~~L 436 (720)
T TIGR01448 391 TA----------STIHRL-LGY----------G---PDTFR-----H-NHL--EDPIDCDLLIVDESSMMDTW--LALSL 436 (720)
T ss_pred cc----------ccHHHH-hhc----------c---CCccc-----h-hhh--hccccCCEEEEeccccCCHH--HHHHH
Confidence 00 000010 000 0 00000 0 000 01245689999999997432 23334
Q ss_pred HHhhcCCCcEEEEecCCCCC
Q 005858 193 LREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 193 l~~~~~~~~rllLTGTPi~N 212 (673)
+. .++...+++|-|-|-|-
T Consensus 437 l~-~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 437 LA-ALPDHARLLLVGDTDQL 455 (720)
T ss_pred HH-hCCCCCEEEEECccccc
Confidence 44 46777899999998654
No 191
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.50 E-value=0.025 Score=66.24 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEE
Q 005858 333 VLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR-KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFV 411 (673)
Q Consensus 333 ~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~v 411 (673)
.+.+.+..+...+..++||.....+++.+...|... +++ +...|.. .|.++++.|.+.- +.++..
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~---------~~~~~~- 587 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRV---------DEGEGS- 587 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHh---------ccCCCe-
Confidence 344444444445555777777777788888887643 333 4456642 5778888886320 012333
Q ss_pred EEEeccccccccCCCC--CCeeEeeCCCCC
Q 005858 412 FMISTRAGGVGLNLVA--ADTVIFYEQDWN 439 (673)
Q Consensus 412 lL~st~agg~GiNL~~--a~~VI~~D~~wn 439 (673)
+|+++....+|||+.+ +..||+.-.|+-
T Consensus 588 VL~g~~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 588 VLFGLQSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred EEEEeccccccccCCCCceEEEEEEcCCCC
Confidence 4555688999999986 789999988873
No 192
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.26 E-value=0.029 Score=64.00 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC--CCCEEEEECcccH
Q 005858 39 PHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS--PGPFLVLCPLSVT 98 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~--~~~~LIV~P~sll 98 (673)
+.|+.++...+.. .-++|.-..|+|||.++..++..+...... ...+++++|+.-.
T Consensus 148 ~~Qk~A~~~al~~----~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALALKS----NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHHhhC----CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7899998766664 678999999999999998888777543322 1358889998544
No 193
>PRK04296 thymidine kinase; Provisional
Probab=96.19 E-value=0.016 Score=56.33 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=25.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.++.-+||.|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 5678899999999999988777533 345677755
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.14 E-value=0.065 Score=48.52 Aligned_cols=41 Identities=32% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
+...++..++|+|||..+-.++..+. ....+++++......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhh
Confidence 56788999999999988887777664 123455555444333
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.13 E-value=0.026 Score=64.54 Aligned_cols=58 Identities=14% Similarity=0.022 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECcccH
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLSVT 98 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~sll 98 (673)
..+.|+.|+.-.+. ++-++|.-.+|+|||.++..++..+.... ....++++++|+.-.
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA 211 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA 211 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH
Confidence 45899999975554 36789999999999999988887775432 223457888997544
No 196
>PRK06526 transposase; Provisional
Probab=95.81 E-value=0.096 Score=53.34 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
+.+.+|..++|+|||..+.++...+...+ .+++++ ....|.+++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLA 142 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHH
Confidence 57899999999999999999988775432 233333 2345666664
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.80 E-value=0.11 Score=53.17 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCCccccCcCCcCCCcHHHHHHHHHHHHHhcCCC-CeEEECCCcchHHHHHHHHHHHhh
Q 005858 23 QTPVDAAEFGVTAELKPHQVEGLSWLIRRYLLGV-NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 23 ~~~~~~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~-~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..|+...|....+-.-+.+..++..+......+. ..+|.-+.|+|||..+-.++..+.
T Consensus 10 ~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 10 TKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3566666665555566677788877765544444 478899999999999888876653
No 198
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.13 Score=55.52 Aligned_cols=131 Identities=8% Similarity=0.046 Sum_probs=71.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECcc--cHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLS--VTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYE 133 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~s--ll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~ 133 (673)
..++.-.+|.|||.++.-++..+.... ...+++.+|+-.. .-..|+ ++.|+..+.+-+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVK---------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceE----------------
Confidence 467888999999999988887765432 1234455554432 112222 4444422221111
Q ss_pred HHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc---HHHHHHHhhcCC--CcEEEEecC
Q 005858 134 HVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS---VLYNVLREHFLM--PRRLLMTGT 208 (673)
Q Consensus 134 ~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s---~~~~~l~~~~~~--~~rllLTGT 208 (673)
++.+++.+......+ .+.|+||||++.+...... .+.+.+.. ... ...+.|+||
T Consensus 238 ------------------~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~-~~~~~e~~LVlsat 296 (388)
T PRK12723 238 ------------------AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA-CGRDAEFHLAVSST 296 (388)
T ss_pred ------------------eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh-cCCCCeEEEEEcCC
Confidence 111222222222222 3569999999998753221 22233332 222 345789999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 005858 209 PIQNNLSELWALMHFCMP 226 (673)
Q Consensus 209 Pi~N~~~El~~ll~~l~p 226 (673)
-=++.+.+.+.-+..+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 297 TKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCHHHHHHHHHHhcCCCC
Confidence 888888877766655443
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.44 E-value=0.05 Score=48.75 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVS 103 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~ 103 (673)
+...+|.-++|+|||..+..++..+.... ..++++.+......+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHH
Confidence 35678999999999999999887764222 34677777655544433
No 200
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.43 E-value=0.044 Score=56.20 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=27.0
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.+.+|.-++|+|||..|-+++..+...+......++.|..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3568999999999999988887765444322223444443
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.42 E-value=0.13 Score=60.55 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=45.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
...|-+-|++++..+... ++-++|....|+|||.++-+++..+... ..++++++|....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s---~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGS---GDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHhcC---CCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHH
Confidence 467999999999877643 3467899999999999888877666432 3568888998654
No 202
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.13 Score=56.82 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 40 HQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|..++..|......+. ..|+..+.|+|||..|..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45555555544444443 2489999999999999999988753
No 203
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.24 E-value=0.16 Score=59.55 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=41.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcC-----CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 34 TAELKPHQVEGLSWLIRRYLL-----GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~-----~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
.++.||-|.+=+..+...+.. +..+++=..||+|||+.-+..+..+... ..++++|-+.+-
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k~vVIST~T~ 88 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKKKLVISTATV 88 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCCeEEEEcCCH
Confidence 467899999977777766655 3456777799999999877665444322 235555555543
No 204
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=0.086 Score=56.31 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|.+++..+...+..++ ..++..+.|+|||..+..++..+..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4455667766666665 4688999999999999999998864
No 205
>PRK08181 transposase; Validated
Probab=95.01 E-value=0.6 Score=47.91 Aligned_cols=47 Identities=23% Similarity=0.043 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..+-+.|..++..+......+.+.+|..++|+|||..+.++...+..
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 34566777777554333345678999999999999999999877754
No 206
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.2 Score=57.87 Aligned_cols=41 Identities=24% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..++ ..||....|+|||..+..++..+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555554444433 3488899999999999999988853
No 207
>PLN03025 replication factor C subunit; Provisional
Probab=94.78 E-value=0.46 Score=50.20 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|.+.+..+......+ .+.++..+.|+|||..+.+++..+.
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 444444444333222 3579999999999999999998874
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.78 E-value=0.81 Score=46.24 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHH---hcCC-CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 39 PHQVEGLSWLIRR---YLLG-VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 39 ~~Q~~gv~~l~~~---~~~~-~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
+.|..++..+... +..+ .+.+|...+|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 4566666555432 2222 4678999999999999999998886432 345555 24566665543
No 209
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.69 E-value=0.2 Score=46.10 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=36.3
Q ss_pred EEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC--CCeeEeeCCCC
Q 005858 372 YERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA--ADTVIFYEQDW 438 (673)
Q Consensus 372 ~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~--a~~VI~~D~~w 438 (673)
.+.+.|. ...+...+++.|... ....+|+++....+|||++. +..||+...|+
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~-------------~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEA-------------CENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHc-------------CCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444453 334578899999833 11145566655999999996 78899988776
No 210
>PF13245 AAA_19: Part of AAA domain
Probab=94.65 E-value=0.096 Score=42.60 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=35.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhc--CCCCCCEEEEECcccH-HHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFS--QMSPGPFLVLCPLSVT-DGWVSEM 105 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~--~~~~~~~LIV~P~sll-~~W~~E~ 105 (673)
++-.++.-.+|+|||.+++..+..+... .. .+++||++|.... .+..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3446668999999999999988888632 33 6679999998544 4333333
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.50 E-value=0.26 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+...+|..+.|+|||..+.+++....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998887764
No 212
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.33 E-value=2.2 Score=50.63 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECc
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPL 95 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~ 95 (673)
.|-|-|+++|.+ ..+..++-...|+|||.+.+.-+.++... +..+..+|+++-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 588999999852 13566777778999999999999888754 3344557777665
No 213
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.33 E-value=0.082 Score=54.88 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCC-CCCEEEEE
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLC 93 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~-~~~~LIV~ 93 (673)
.+.++..++|+|||..|.+++..+...+.. .++++.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 367888999999999999888887654433 23444443
No 214
>PRK08116 hypothetical protein; Validated
Probab=94.16 E-value=0.42 Score=49.11 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=31.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
+.+.+|..++|+|||..+.+++..+... ..+++++.-..++..+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHH
Confidence 3468899999999999999999988644 2455555433344433
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.02 E-value=0.4 Score=51.48 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=24.9
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
...|...+|+|||.++..++..+... ...+.++..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~a 277 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITT 277 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEec
Confidence 35688899999999999988877532 234555544
No 216
>CHL00181 cbbX CbbX; Provisional
Probab=93.98 E-value=0.12 Score=53.61 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=26.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCC-CCCEEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLC 93 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~-~~~~LIV~ 93 (673)
+.+|.-++|+|||..|-+++..+...+.. .++++.|.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 46889999999999999998877554433 33444443
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.92 E-value=0.65 Score=49.17 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHHH---Hh-cCCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 35 AELKPHQVEGLSWLIR---RY-LLGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~---~~-~~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
...+.++..++.++.. .+ ..+.+.+|..++|+|||..+.+++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3566777676664432 22 23567889999999999999999988864
No 218
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.88 E-value=0.73 Score=53.00 Aligned_cols=41 Identities=29% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..++ . .|+..+.|+|||..+-.++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3344444444443343 2 478999999999999999988854
No 219
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.83 E-value=0.45 Score=50.37 Aligned_cols=46 Identities=24% Similarity=0.127 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
++|+|......++..-.-...-++..+.|+|||..|..++..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 5899988887777662222245678899999999999999988643
No 220
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.77 E-value=0.39 Score=48.37 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHh--cCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRY--LLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~--~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+..++.++.... ..+...+|..+.|+|||-.+.++...+.
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344554444322 2234679999999999998888777664
No 221
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.55 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.7
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..|+..+.|+|||..+..++..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3488899999999999999988854
No 222
>PHA02533 17 large terminase protein; Provisional
Probab=93.75 E-value=1.1 Score=50.55 Aligned_cols=58 Identities=16% Similarity=0.041 Sum_probs=39.6
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.+..|.|+|+.-+..+.. ++-.++.-.=..|||..+.+++.++..... ...+++++|.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~ 113 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHK 113 (534)
T ss_pred eecCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCC
Confidence 457799999998876632 234466667789999998876655443332 3357888885
No 223
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.66 E-value=0.25 Score=45.47 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=34.4
Q ss_pred EEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc--ccccccCCCC--CCeeEeeCCCC
Q 005858 373 ERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR--AGGVGLNLVA--ADTVIFYEQDW 438 (673)
Q Consensus 373 ~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~--agg~GiNL~~--a~~VI~~D~~w 438 (673)
+.+.+... .+..++++.|+...+ .+ . .+|+++. ..++|||+++ +..||+...|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~---------~~-g-~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACE---------AR-G-ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcC---------CC-C-EEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44555433 345788899984310 11 1 3444443 4899999997 78999988886
No 224
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.65 E-value=0.17 Score=60.36 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=74.6
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-----HHHHHHHHHHCCCCeEEEEeCChHHHHHH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-----DGWVSEMAKFTPKLEVLRYVGEREQRRNI 127 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-----~~W~~E~~k~~p~~~v~~~~g~~~~~~~~ 127 (673)
..+.+++++...|+|||.+|=-++ +. .-..+.+.-++|...+ .-|...|.+. .+..++...|......++
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~--l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl 1231 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELAL--LR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL 1231 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHh--cC--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH
Confidence 345689999999999998764333 22 3344568889998544 6688888777 577777777765433322
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
.+ .-+++|.|++.+-... .-...++.|+||.|.+....
T Consensus 1232 ~~------------------~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1232 LQ------------------KGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred hh------------------hcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 21 1479999999886553 23346899999999987533
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.63 E-value=0.26 Score=51.65 Aligned_cols=54 Identities=26% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
+|.-|+.-|+.- .-.-+.|...-|+|||+.|+|+..+--......+.++|--|.
T Consensus 232 eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 232 EQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred HHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 777777655442 122366778889999999988765544444445554554443
No 226
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.62 Score=55.00 Aligned_cols=41 Identities=27% Similarity=0.177 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC--CCe-EEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLG--VNV-LLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~--~~~-iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..+ ..+ |+..+.|+|||..+-.++..+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 444444443333333 234 79999999999999999988853
No 227
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.53 E-value=1.2 Score=48.82 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=94.2
Q ss_pred HHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEE
Q 005858 334 LDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFV 411 (673)
Q Consensus 334 l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~v 411 (673)
...+|..+. ....++|||...--..-.|..+|...++.++.++.-++..+-..+-..|. .+...+
T Consensus 287 ~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~-------------~G~~~i 353 (442)
T PF06862_consen 287 TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF-------------HGRKPI 353 (442)
T ss_pred HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH-------------cCCceE
Confidence 334555555 34568999987666666789999999999999999999999999999998 577778
Q ss_pred EEEecccc-ccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCC----cCeEEEEEEecCCCHHHHHHHHHHHH
Q 005858 412 FMISTRAG-GVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ----MNHVLSINLVTEHTVEEVIMRRAERK 481 (673)
Q Consensus 412 lL~st~ag-g~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ----~k~V~Vy~lv~~~TiEe~i~~~~~~K 481 (673)
+|.|-++- =.=..+.++.+||||.+|-+|.-|..-..-...-.+ .....+.-|.++ .|..-+++..--
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk--~D~~~LErIVGt 426 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK--YDALRLERIVGT 426 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH--hHHHHHHHHhCH
Confidence 88876542 123446679999999999999999988765544333 223444444444 454444444433
No 228
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.53 E-value=0.65 Score=49.25 Aligned_cols=39 Identities=23% Similarity=0.106 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhh
Q 005858 42 VEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 42 ~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+.+.++......+. ..++..+.|+|||..+.+++..+.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334444444444444 688999999999999999998774
No 229
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.7 Score=49.80 Aligned_cols=41 Identities=27% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~ 80 (673)
-|...+..+...+..+. . .++..+.|+|||..+-.++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 35555555555444332 3 48999999999999999998874
No 230
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=93.47 E-value=0.47 Score=57.31 Aligned_cols=185 Identities=26% Similarity=0.365 Sum_probs=100.4
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcch--HHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLG--KTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlG--KTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
......+.++|.....-..... .....+++..|+| ||..+..+.......+ .....++++|..+..+|..+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~ 155 (866)
T COG0553 79 PGSRFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRG-EIKRVLILVPKTLRAQWVVELLEK 155 (866)
T ss_pred hhcccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhh-hhccceeccchHHHHHHHHHhhhh
Confidence 3445667778877654333322 2337899999999 8999887776665444 445689999999999999998765
Q ss_pred CCC-CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc----cccccCCCc---cEEEEcCCc
Q 005858 109 TPK-LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD----QGFLSQIPW---CYTIIDEAQ 180 (673)
Q Consensus 109 ~p~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~----~~~l~~~~~---~~vIvDEaH 180 (673)
... ..+....+..... . .+.. . ......+.++.+.+..... ...+....| +++++||+|
T Consensus 156 ~~~~~~~~~~~~~~~~~-------~-~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (866)
T COG0553 156 FNIRLAVLDKEGLRYLL-------K-QYDA---Y--NPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAH 222 (866)
T ss_pred ccccchhhhhhhhhhhh-------h-hhcc---c--ccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHh
Confidence 311 1111110000000 0 0000 0 0000000033333333322 122333345 899999999
Q ss_pred cccCcc---------cHHHHHHHhhc-CCC------cEEEEecCCCCCCHHHHHHHHHHhCCCCCCC
Q 005858 181 RLKNPS---------SVLYNVLREHF-LMP------RRLLMTGTPIQNNLSELWALMHFCMPSVFGT 231 (673)
Q Consensus 181 ~~KN~~---------s~~~~~l~~~~-~~~------~rllLTGTPi~N~~~El~~ll~~l~p~~~~~ 231 (673)
.+.+.. ...+..+.... +.. ....+++||......+++....++.+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 223 NLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 987642 22223222211 111 2347899999888888777666666655544
No 231
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.42 E-value=0.74 Score=47.55 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhcCC-----CCeEEECCCcchHHHHHHHHHHHh
Q 005858 38 KPHQVEGLSWLIRRYLLG-----VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~-----~~~iLade~GlGKTl~ai~~i~~l 79 (673)
||.=.+++..|-..+... .+.+|..+.|-|||..+=-|....
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 566666777666655432 367899999999999876666544
No 232
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.82 Score=52.16 Aligned_cols=42 Identities=24% Similarity=0.097 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhhh
Q 005858 40 HQVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|...+..|...+..+. . .|+..+.|+|||..+..++..+..
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35566655555544443 3 478999999999999999988854
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.36 E-value=0.47 Score=46.30 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=66.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCC--hHHHHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGE--REQRRNIRRTMYEHV 135 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~--~~~~~~~~~~~~~~~ 135 (673)
.++.-++|.|||.++.-++.+++.. .+.+.+||--.--..=.++++.+...+.+-.+... .+......+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~----- 75 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA----- 75 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH-----
Confidence 4677899999999999999888655 34456665532222223344444422222222211 1111111111
Q ss_pred HhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc---HHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 136 KEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS---VLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 136 ~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s---~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
...+..-++|+|+||-+.+..+... .+.+.+....+....+.|++|--+.
T Consensus 76 ---------------------------l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 76 ---------------------------LEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp ---------------------------HHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred ---------------------------HHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 1112233568999999887544322 2333333322334557789987665
Q ss_pred CHHHHHHHHHHh
Q 005858 213 NLSELWALMHFC 224 (673)
Q Consensus 213 ~~~El~~ll~~l 224 (673)
.+.++......+
T Consensus 129 ~~~~~~~~~~~~ 140 (196)
T PF00448_consen 129 DLEQALAFYEAF 140 (196)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHhhcc
Confidence 555544444444
No 234
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.85 Score=51.24 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCC--Ce-EEECCCcchHHHHHHHHHHHhhhc
Q 005858 41 QVEGLSWLIRRYLLGV--NV-LLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~~-iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
|...+..|......+. .. ++..+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455555544444443 23 899999999999999999888543
No 235
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=92.95 E-value=0.55 Score=56.63 Aligned_cols=59 Identities=10% Similarity=-0.089 Sum_probs=41.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
...|-+-|+++|..++.. +.-++|.-..|+|||.++-++...+... ...++.++|....
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcHHH
Confidence 356999999999877653 3357888899999999765554444322 3457888887654
No 236
>PRK08727 hypothetical protein; Validated
Probab=92.88 E-value=0.69 Score=46.49 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.1
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..+|..+.|+|||-.+.++...+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999998888877653
No 237
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.61 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.|+..++|+|||..|-.++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999988774
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=92.73 E-value=0.68 Score=49.07 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=28.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc----ccHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL----SVTDGWVS 103 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~----sll~~W~~ 103 (673)
.++...+|+|||.++..++..+...+ .++++++.- ....||..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~ 189 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEE 189 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHH
Confidence 56788999999999988888775432 345555443 33455543
No 239
>PRK06921 hypothetical protein; Provisional
Probab=92.65 E-value=0.59 Score=47.98 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=23.5
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 567899999999999999999988754
No 240
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.44 E-value=1.2 Score=50.32 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|..++..|...+..+. ..|+..+.|+|||..+..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3333444444443333 3578999999999999999988753
No 241
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.42 E-value=1.5 Score=51.47 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHHHHhcC--CC-Ce-EEECCCcchHHHHHHHHHHHhh
Q 005858 36 ELKPHQVEGLSWLIRRYLL--GV-NV-LLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~--~~-~~-iLade~GlGKTl~ai~~i~~l~ 80 (673)
.=|+-|.+.+...+..... +. ++ +|...+|+|||.++-.++..+.
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588888877655554332 22 34 4899999999999999887774
No 242
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.38 E-value=0.46 Score=48.66 Aligned_cols=41 Identities=27% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcC--CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLL--GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~--~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+|...|+-|.+.... ..+.++..+.|+|||-+++++.+.+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 788888776655443 34578888999999999999999885
No 243
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.35 E-value=0.79 Score=50.37 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=34.5
Q ss_pred CccEEEEcCCccccCcccH---HHHHHHhh-cCCCcEEEEecCCCCCCHHHHHHHHHHhCC
Q 005858 170 PWCYTIIDEAQRLKNPSSV---LYNVLREH-FLMPRRLLMTGTPIQNNLSELWALMHFCMP 226 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~s~---~~~~l~~~-~~~~~rllLTGTPi~N~~~El~~ll~~l~p 226 (673)
.+|+||||-+-+....... +...+... ......++|++|+=++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4699999998764332211 22222211 122346889999877788887777765544
No 244
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.32 E-value=0.78 Score=51.45 Aligned_cols=42 Identities=24% Similarity=0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 40 HQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
-|...+..|...+..++ ..|+..+.|+|||.++-.++..+..
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45556655554444443 5789999999999999999988854
No 245
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.32 E-value=0.8 Score=52.19 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=99.8
Q ss_pred ccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHH-H
Q 005858 28 AAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSE-M 105 (673)
Q Consensus 28 ~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E-~ 105 (673)
..|-.......|||++-++-+.... -....+.-..-+|||..++.++.+.... .+.|+|+|.|. .....|..+ |
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHH
Confidence 3454556789999999887554432 2356788888999999888888776433 46889999997 455667643 4
Q ss_pred HHHC---CCCeEEEEe-CChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcc
Q 005858 106 AKFT---PKLEVLRYV-GEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR 181 (673)
Q Consensus 106 ~k~~---p~~~v~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~ 181 (673)
.... |.++-.+.. ........+.. ....+-.+.+..- +....|.+...++|++||...
T Consensus 84 ~Pmi~~sp~l~~~~~~~~~~~~~~t~~~--------------k~f~gg~l~~~ga----~S~~~l~s~~~r~~~~DEvD~ 145 (557)
T PF05876_consen 84 DPMIRASPVLRRKLSPSKSRDSGNTILY--------------KRFPGGFLYLVGA----NSPSNLRSRPARYLLLDEVDR 145 (557)
T ss_pred HHHHHhCHHHHHHhCchhhcccCCchhh--------------eecCCCEEEEEeC----CCCcccccCCcCEEEEechhh
Confidence 3322 322211111 00000000000 0001112333322 234567888899999999998
Q ss_pred cc----CcccHH---HHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHH
Q 005858 182 LK----NPSSVL---YNVLREHFLMPRRLLMTGTPIQNNLSELWALMH 222 (673)
Q Consensus 182 ~K----N~~s~~---~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~ 222 (673)
+- +..... .+... .+....++++..||......-++.++.
T Consensus 146 ~p~~~~~eGdp~~la~~R~~-tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 146 YPDDVGGEGDPVELAEKRTK-TFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred ccccCccCCCHHHHHHHHHh-hhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 83 222222 23333 245678899999998776555555543
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.32 E-value=0.8 Score=50.80 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=30.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
+.+|..++|+|||..+-++..++.... ....++.+.+...+......+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHH
Confidence 467999999999998888877765333 233455554444444444443
No 247
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.30 E-value=1 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|+.-..|+|||..+..++..|..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 578899999999999999988864
No 248
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=1.2 Score=50.12 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..+ ...|+..+.|+|||..+-.++..+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444444333 23488999999999999999988853
No 249
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=1.4 Score=50.45 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|...+..|...+..++ ..|+..+.|+|||..|..++..+.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333444444333342 458999999999999999998874
No 250
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.15 E-value=0.8 Score=49.26 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHHhcC---CCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 37 LKPHQVEGLSWLIRRYLL---GVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~---~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
=|..|.+.+...+..... +.+.+|..+.|+|||.++-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 488888887665554322 346899999999999999988887643
No 251
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.12 E-value=1.3 Score=41.72 Aligned_cols=44 Identities=27% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhhhcCC
Q 005858 41 QVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLKFSQM 84 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~~~~~ 84 (673)
|.+.+..|...+..+. . -|+..+.|.||+..+..++..+.....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5666666766665553 3 488889999999999999998865443
No 252
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.10 E-value=1.5 Score=51.49 Aligned_cols=129 Identities=24% Similarity=0.231 Sum_probs=86.5
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHH----HHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLD----ILQDFL 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld----~l~~~L 365 (673)
++++.|...+..+...... ....+.......+|||..+....+......|.+++|.+.....+. .+.+++
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~------~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 261 ELTGAQKRVVAEILADLAS------PKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCHHHHHHHHHHHHhhhc------cCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 3677888877776653211 011111222345899998665554445567889999998876554 445555
Q ss_pred HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCC
Q 005858 366 ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQD 437 (673)
Q Consensus 366 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~ 437 (673)
...|+++..++|+++..+|...+.... .+...+++.+.......+.+.....||+=+.+
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~-------------~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIA-------------SGEADIVIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHh-------------CCCCCEEEchHHHhcccchhcccceEEEechh
Confidence 566899999999999999999988886 45566777666566666777777776654443
No 253
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.05 E-value=1.3 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..|+..+.|+|||..|..++..+..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcC
Confidence 5789999999999999998877743
No 254
>PF13173 AAA_14: AAA domain
Probab=92.04 E-value=1.2 Score=40.03 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.-.+|...-|+|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578888999999999988887764
No 255
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.02 E-value=1.3 Score=48.07 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..++..+.|+|||..+.+++..+..
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3678899999999999999988753
No 256
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.80 E-value=1.3 Score=49.77 Aligned_cols=41 Identities=24% Similarity=0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|......+. ..++..+.|+|||..+-.++..+..
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4444444544444443 2388999999999999999988753
No 257
>PRK12377 putative replication protein; Provisional
Probab=91.74 E-value=4.1 Score=41.28 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=29.7
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+.+|..++|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHH
Confidence 4678999999999999999998886432 344544333444433
No 258
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.72 E-value=1.2 Score=54.13 Aligned_cols=59 Identities=12% Similarity=-0.048 Sum_probs=43.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
...|-+-|++++..+.. .++-++|...-|+|||.++-++...+... ...++.++|....
T Consensus 379 ~~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~ApTgkA 437 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCcHHH
Confidence 36799999999987642 24557888899999999888777655432 3457888887544
No 259
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.51 E-value=2.9 Score=49.02 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=86.0
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh-
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL- 367 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~- 367 (673)
.+++..|.+.+..+.... ...........+|||..+...++......|.++||.+........+.+.|..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~---------~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA---------GFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCCHHHHHHHHHHHhcc---------CCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 357889998888876531 1111222234589999988888877778899999999998887777777765
Q ss_pred CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCC
Q 005858 368 RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQ 436 (673)
Q Consensus 368 ~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~ 436 (673)
.|..+..++|+++..+|.+...+.. .+...+++.+..+. =+.+.....||+=+-
T Consensus 214 fg~~v~~~~s~~s~~~r~~~~~~~~-------------~g~~~IVVgTrsal--~~p~~~l~liVvDEe 267 (679)
T PRK05580 214 FGAPVAVLHSGLSDGERLDEWRKAK-------------RGEAKVVIGARSAL--FLPFKNLGLIIVDEE 267 (679)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHH-------------cCCCCEEEeccHHh--cccccCCCEEEEECC
Confidence 3788999999999999888777765 34455555544332 244556666666553
No 260
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.46 E-value=2.1 Score=45.08 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=40.4
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
|...++|+|......+...+..++ .-++..+.|+||+..|.+++..+...
T Consensus 1 ~~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 1 MTSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred CCccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 345689999999888887766554 35788899999999999999988643
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.39 E-value=1.9 Score=45.55 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 37 LKPHQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
++|+|...-..+...+..++ .-++..+.|+||+..|..++..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887777777766554 346788999999999999999886543
No 262
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.26 E-value=0.99 Score=50.20 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=29.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSE 104 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E 104 (673)
..+|..++|+|||..+-++...+..... ...++.+.....+..+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHH
Confidence 4788999999999999998887754332 2334444333334333333
No 263
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.22 E-value=0.95 Score=51.92 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..++ . .|+....|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555555444443 2 488999999999999999988854
No 264
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=2.2 Score=45.33 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEE
Q 005858 40 HQVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLR 116 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~ 116 (673)
.|...+..+...+..+. . -++..+.|+|||..+..++..+......... |...+.....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 45555655655554443 3 4889999999999999999887543322221 33333333333334457766665
Q ss_pred EeCC
Q 005858 117 YVGE 120 (673)
Q Consensus 117 ~~g~ 120 (673)
..|.
T Consensus 85 ~~~~ 88 (329)
T PRK08058 85 PDGQ 88 (329)
T ss_pred cccc
Confidence 5443
No 265
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.08 E-value=1.1 Score=48.99 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=25.2
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..+|..+.|+|||..+.++...+.... ....++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi 172 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYV 172 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEE
Confidence 457999999999999998888875432 22334544
No 266
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=91.06 E-value=0.33 Score=50.67 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECccc-HHHHHHHHHH
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLSV-TDGWVSEMAK 107 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~sl-l~~W~~E~~k 107 (673)
|.+-|..+|.+ . .+..++-...|+|||.+++.-+.++...+ ..+..+|+++++.. .......+..
T Consensus 1 l~~eQ~~~i~~--~----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--T----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--C----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 56789998865 1 35666777799999999998888877655 45566999998754 3334344433
No 267
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.00 E-value=0.52 Score=46.33 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
-.+-|++.++|+|||..+.+++..+.
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHh
Confidence 35789999999999999999998885
No 268
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.83 E-value=4 Score=45.14 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=25.7
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+|..++|+|||..+-++...+..... ...++.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~ 167 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYIT 167 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 4789999999999999988887754332 23345553
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.66 E-value=2.5 Score=44.44 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=18.5
Q ss_pred CeEE-ECCCcchHHHHHHHHHHHh
Q 005858 57 NVLL-GDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iL-ade~GlGKTl~ai~~i~~l 79 (673)
+.+| ..+.|+|||..+-+++..+
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4555 8999999999988887654
No 270
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.30 E-value=6.4 Score=38.03 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=71.6
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE-CcccHHHHHHHHHHHCCCCeEEEEeCChH----HHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC-PLSVTDGWVSEMAKFTPKLEVLRYVGERE----QRRNIR 128 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~-P~sll~~W~~E~~k~~p~~~v~~~~g~~~----~~~~~~ 128 (673)
..+..++....|.|||..+++.+......+ .+++||= -+.-...=...+-+..|++.+..+...-. .+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 356788899999999999999886654333 4566661 12211111112222234444433221100 000000
Q ss_pred HHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc----cHHHHHHHhhcCCCcEEE
Q 005858 129 RTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS----SVLYNVLREHFLMPRRLL 204 (673)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~----s~~~~~l~~~~~~~~rll 204 (673)
... .+.+..-...+.+-.+|+||+||.-..-+.. ......+.. .+..--++
T Consensus 98 ~~~------------------------~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evV 152 (191)
T PRK05986 98 AAA------------------------REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVV 152 (191)
T ss_pred HHH------------------------HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEE
Confidence 000 0112222334456789999999987655422 334444432 34444799
Q ss_pred EecCCCCCCHHHHHHHHH
Q 005858 205 MTGTPIQNNLSELWALMH 222 (673)
Q Consensus 205 LTGTPi~N~~~El~~ll~ 222 (673)
|||.-.+..+.|+..++.
T Consensus 153 lTGR~~p~~Lie~ADlVT 170 (191)
T PRK05986 153 ITGRGAPRELIEAADLVT 170 (191)
T ss_pred EECCCCCHHHHHhCchhe
Confidence 999865555544444443
No 271
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.27 E-value=3.3 Score=47.87 Aligned_cols=40 Identities=28% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|...+..|...+..++ ..|+....|+|||..+..++..+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4444444444333333 458999999999999999998875
No 272
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.14 E-value=4.3 Score=46.60 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 39 PHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
|+=.+-|+.+...+.+...++.++ =|.|||..+..++.++.... ...++|.+|.
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~ 225 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFL--EIDIVVQAQR 225 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhc--CCeEEEECCC
Confidence 344455666777776666666654 69999999887776665423 2458899995
No 273
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.13 E-value=2.6 Score=49.06 Aligned_cols=40 Identities=25% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|..++..|......+. ..|+..+.|+|||..|-.++..+.
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4444444444443332 347899999999999999998775
No 274
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.06 E-value=2.7 Score=45.26 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 40 HQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
-|.+++..+.+.+..++ .-++..+.|+|||..+.+++..+....
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 35566666666655543 467888999999999999999986543
No 275
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.95 E-value=0.6 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
..|+..++|+|||..|-.++..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCccchhHHHHHHHhcc
Confidence 58999999999999888777766
No 276
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.85 E-value=1.9 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred eEEECCCcchHHHHHHHHHHHhhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|+..+.|+|||..+-+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 589999999999999999988753
No 277
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.83 E-value=2.6 Score=45.79 Aligned_cols=46 Identities=28% Similarity=0.332 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHhc---CCCCeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 38 KPHQVEGLSWLIRRYL---LGVNVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~---~~~~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
|+-|.+-+.-.+.... .+.+.++..+.|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 5666666554443332 235689999999999999999998875433
No 278
>PRK05642 DNA replication initiation factor; Validated
Probab=89.72 E-value=1.6 Score=43.91 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=19.8
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+.+|..+.|+|||--+-++...+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999998777766553
No 279
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.70 E-value=0.29 Score=54.15 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=26.1
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHH
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTD 99 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~ 99 (673)
-+.+|+|||++|.++|.++...+ .+.+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHH
Confidence 35799999999999998875333 3446776654 5553
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.70 E-value=2.4 Score=45.54 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=73.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC--CCCeEEEEeCChHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT--PKLEVLRYVGEREQRRNIRRTMY 132 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~--p~~~v~~~~g~~~~~~~~~~~~~ 132 (673)
++-..|..++|.|||.+..-+++.+.......+-.||-.-+.=+ --..+++.++ -++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI-GA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI-GAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh-hHHHHHHHHHHHhCCce------------------
Confidence 45567889999999999887777665344444433444333211 1122232222 12222
Q ss_pred HHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCcc-ccCcc--cHHHHHHHhhcCCCcEEEEecCC
Q 005858 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQR-LKNPS--SVLYNVLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 133 ~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~-~KN~~--s~~~~~l~~~~~~~~rllLTGTP 209 (673)
.++.++.-|......+.. +|+|.||=+-+ .++.. +.+-..+.........|.||+|-
T Consensus 264 ------------------~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ------------------EVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred ------------------EEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc
Confidence 233344444333333333 38888996544 33322 11212222222233458899999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 005858 210 IQNNLSELWALMHFCMPS 227 (673)
Q Consensus 210 i~N~~~El~~ll~~l~p~ 227 (673)
=.+.+.|++..+..+...
T Consensus 324 K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 324 KYEDLKEIIKQFSLFPID 341 (407)
T ss_pred chHHHHHHHHHhccCCcc
Confidence 888899999888877654
No 281
>PTZ00293 thymidine kinase; Provisional
Probab=89.61 E-value=2.4 Score=41.64 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=26.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
-++..+||+|||...|-.+..+.. ..++++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 467889999999888877665543 345688988864
No 282
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.47 E-value=3.1 Score=48.37 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=84.9
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHH----HHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDIL----QDFL 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l----~~~L 365 (673)
++++.|.+....++..... ....+..-....+|||..+....+......|.+++|.+.....+..+ .+++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~------~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKS------DVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCCHHHHHHHHHHHHHhcc------CCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHh
Confidence 4677888887776653210 11111122234589999865544444456788999999877665544 4444
Q ss_pred HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCC
Q 005858 366 ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQD 437 (673)
Q Consensus 366 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~ 437 (673)
...|+++..++|+++..+|...++... .+...+++.+....-..+.+.....||+=+.+
T Consensus 309 ~~~gi~v~lltg~~~~~~r~~~~~~i~-------------~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 309 APLGIEVALLTGSLKGKRRKELLETIA-------------SGQIHLVVGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred cccCcEEEEEecCCCHHHHHHHHHHHh-------------CCCCCEEEecHHHHhccccccccceEEEechh
Confidence 455899999999999999988888776 35566777666666666777777766654443
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.35 E-value=5.8 Score=42.71 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
+...+|..++|+|||.++..++..+....+. .++.+|+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 4457889999999999999998876433222 23455543
No 284
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.32 E-value=4.4 Score=44.24 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..+. ..|+..+.|+|||..|..++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444444444444442 3578899999999999999988854
No 285
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.22 E-value=0.68 Score=52.18 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=43.4
Q ss_pred ccCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHh
Q 005858 28 AAEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYL 79 (673)
Q Consensus 28 ~~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l 79 (673)
...+.+.+++|+-|.+-.+-+.+-...|.-||+-.++|+|||+..|+.. .||
T Consensus 7 ~~~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 7 AIEFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred ccccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 3456678899999999888888888889999999999999999876554 444
No 286
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.21 E-value=5 Score=42.28 Aligned_cols=48 Identities=21% Similarity=0.084 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
.++|+|...-..+...+..++ .-++..+.|+||+..|..++..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478989888888877765554 467889999999999999999886544
No 287
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=89.12 E-value=1 Score=49.17 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
..+|-|..-..-+.+....++.|+|-++.|+|||+.-++++..+....+....-||-|...
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCc
Confidence 4689998877667777778889999999999999999998877766665444458888753
No 288
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=3.3 Score=47.62 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.|...+..|...+..+. . .|+..+.|+|||..+..++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35556666655544443 2 38899999999999999998875
No 289
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.92 E-value=3 Score=48.18 Aligned_cols=42 Identities=21% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 40 HQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|...+..|...+..++ ..|+..+.|+|||..+.+++..+..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 45556666655554443 4588999999999999999998853
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.87 E-value=3.7 Score=41.85 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
.-.+...+.-+...+..+.+.++...+|+|||..++|+...+. .. ..+++++.-..++.++...+
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHHHHHHHHH
Confidence 3344444444445555778999999999999999999999886 22 34566665455555555444
No 291
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.78 E-value=3.3 Score=46.91 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.|+..+.|+|||..+-.++..+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999998874
No 292
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.75 E-value=3.2 Score=47.69 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 40 HQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
.|...+..|...+..++ ..|+..+.|+|||..+..++..+...
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 45555555555554443 46888899999999999999888643
No 293
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.69 E-value=4.1 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 36 ELKPHQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
.+||+|...-..+...+..++ .-++..+.|+||+..|.+++.++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 468888888888877776654 34688899999999999999998654
No 294
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.57 E-value=2.6 Score=49.86 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.||.-++|+|||..+-+++..+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988887764
No 295
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.57 E-value=3.9 Score=46.89 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..|+..+.|+|||..|..++..+..
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccc
Confidence 4567899999999999999988853
No 296
>PRK06893 DNA replication initiation factor; Validated
Probab=88.54 E-value=2 Score=42.97 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=20.9
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..+|..++|+|||-.+.+++..+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999888877654
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.43 E-value=5.2 Score=44.05 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=25.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..+++..+|+|||.++..++.++...+ .++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecC
Confidence 367889999999999999998876432 34455543
No 298
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.42 E-value=3.7 Score=46.93 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|+..+.|+|||..+-.++..+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 577999999999999999887753
No 299
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.40 E-value=4 Score=46.65 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=29.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVS 103 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~ 103 (673)
..+|....|+|||..+.++..++.... ....++.+....++..+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHH
Confidence 378899999999999988888775322 1233455543344444433
No 300
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.38 E-value=2.9 Score=37.10 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=26.5
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
+|.-++|+|||..+-.++..+. .+++.+....+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELIS 36 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhcc------ccccccccccccc
Confidence 6778999999999999888772 4566666665553
No 301
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.04 E-value=7.8 Score=40.55 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|.+.+..+......+ .+.+|..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444444443333 3579999999999999988887763
No 302
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.98 E-value=1.5 Score=48.49 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=25.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
+.+|..++|+|||..+-++...+... ..+++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~ 176 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVR 176 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEee
Confidence 47899999999999999988887543 24455543
No 303
>PRK09183 transposase/IS protein; Provisional
Probab=87.97 E-value=9 Score=39.11 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+.+.+|..++|+|||..+.++.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999998876654
No 304
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.93 E-value=5.5 Score=38.31 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..++..+.|+|||..+..++..+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4678899999999999999988853
No 305
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.85 E-value=5.1 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.9
Q ss_pred eEEECCCcchHHHHHHHHHHHhhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|+..+.|+|||..+..++..+..
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcC
Confidence 478899999999999999988753
No 306
>PRK04195 replication factor C large subunit; Provisional
Probab=87.76 E-value=6.3 Score=44.25 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHHhcC---CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 37 LKPHQVEGLSWLIRRYLL---GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~---~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.++..+.-.+..+.. ....+|..+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 345555555333333333 3568999999999999998888766
No 307
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.75 E-value=3.9 Score=40.70 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
.+...+|..+.|+|||..+.++....... ..+++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEe
Confidence 34578999999999999998888766432 23445543
No 308
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.71 E-value=5.3 Score=44.75 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCC--C-eEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLLGV--N-VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~--~-~iLade~GlGKTl~ai~~i~~l~ 80 (673)
-|...+..+......+. + .++..+.|+|||..+-.++..+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45555555555554443 3 36899999999999999888774
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.59 E-value=1.7 Score=46.79 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
.-.+|.-++|.|||..++.++..+... .+++|+|.-.....+......++
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHc
Confidence 346889999999999999988777532 25678887655555554444443
No 310
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.57 E-value=2.9 Score=48.15 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+..|...+..+. .-|+..+.|+|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5566666655554442 3578899999999999999988854
No 311
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.56 E-value=9.6 Score=38.37 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH------HHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT------DGWVSEMAK 107 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll------~~W~~E~~k 107 (673)
-..+..++|+|||+..=+++..+. ....++|+.|+.++ .-|..++..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 467888999999998875555442 23334567777544 557666654
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.32 E-value=4.6 Score=37.89 Aligned_cols=134 Identities=14% Similarity=-0.001 Sum_probs=67.1
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE-CcccHHHHHHHHHHHCCCCeEEEEeCCh----HHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC-PLSVTDGWVSEMAKFTPKLEVLRYVGER----EQRRNIRRTMY 132 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~-P~sll~~W~~E~~k~~p~~~v~~~~g~~----~~~~~~~~~~~ 132 (673)
..+.-..|.|||..|++.+...... ..++++|= -+.--..=...+-+.+|++.+..+.... ...........
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~---g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH---GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHH
Confidence 4566678999999999888655433 34566641 1221000012223334665555432211 01111111000
Q ss_pred HHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc----ccHHHHHHHhhcCCCcEEEEecC
Q 005858 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP----SSVLYNVLREHFLMPRRLLMTGT 208 (673)
Q Consensus 133 ~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~----~s~~~~~l~~~~~~~~rllLTGT 208 (673)
+.+......+....+|+||+||.=..-+. .......+.. .+...-++|||-
T Consensus 82 ------------------------~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr 136 (159)
T cd00561 82 ------------------------EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGR 136 (159)
T ss_pred ------------------------HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECC
Confidence 11112223344567899999998776432 2344455543 344557999998
Q ss_pred CCCCCHHHHHH
Q 005858 209 PIQNNLSELWA 219 (673)
Q Consensus 209 Pi~N~~~El~~ 219 (673)
-.+..+.|+..
T Consensus 137 ~~p~~l~e~AD 147 (159)
T cd00561 137 NAPKELIEAAD 147 (159)
T ss_pred CCCHHHHHhCc
Confidence 66555444433
No 313
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=0.88 Score=47.85 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=34.9
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
....|.+|..++|+|||+.|-+.+... ..+++=|--..+.+.|--|-.|.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 345688999999999999999888654 23445555556667776554443
No 314
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=87.19 E-value=1.4 Score=42.17 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
++.-+|++|||...+..+..+... .++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEec
Confidence 566799999999999888766443 3557887775
No 315
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.17 E-value=6.5 Score=41.64 Aligned_cols=43 Identities=28% Similarity=0.134 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHh----cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 37 LKPHQVEGLSWLIRRY----LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~----~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
-++..++.+.-++... ....+.++..+.|+|||..+.+++..+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3455555554333322 113468999999999999999888776
No 316
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=8.9 Score=41.26 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 35 AELKPHQVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
..-|+-|.+-+...+.....+ .+.++...+|+|||.++-.++..+....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 557899998887665544433 3589999999999999999988886443
No 317
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.12 E-value=7.7 Score=44.30 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..|+..+.|+|||..|..++..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3578999999999999999988853
No 318
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.07 E-value=4.3 Score=46.80 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=61.1
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEE
Q 005858 333 VLDLLLKKLYN-SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFV 411 (673)
Q Consensus 333 ~l~~ll~~~~~-~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~v 411 (673)
+...+...+.. .|+..++|+.+.. +..+...|...---.+.+.|..+ .|..++++|...- ..+..-
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~-~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~----------~~~~~~ 524 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSH-ISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALY----------ANGIQP 524 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHH-HHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhh----------cCCCCc
Confidence 33444444444 4555555665544 55566666543112345567543 4677899998431 123456
Q ss_pred EEEeccccccccCC--------C--CCCeeEeeCCCCCcchH
Q 005858 412 FMISTRAGGVGLNL--------V--AADTVIFYEQDWNPQVD 443 (673)
Q Consensus 412 lL~st~agg~GiNL--------~--~a~~VI~~D~~wnp~~~ 443 (673)
+|+.|.+..+|||+ . .+..||+.-.|+-|..-
T Consensus 525 vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 525 VLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred EEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCCh
Confidence 78889999999999 3 38999999999877433
No 319
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.02 E-value=5.3 Score=39.98 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
.+.-.++..++|+|||..++.++..+...+ .+.+.|+......+-.+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHH
Confidence 345678999999999999988887764322 456778765444443344333
No 320
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.86 E-value=4.5 Score=45.61 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=69.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhc
Q 005858 326 TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR-KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404 (673)
Q Consensus 326 ~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~ 404 (673)
.+|||..+...++......|.++||.+........+.+.|+.. |..+..++|.++..+|.+...+..
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~------------ 73 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVK------------ 73 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHH------------
Confidence 4799999988888888888999999999988777777777644 778999999999999888776654
Q ss_pred CCCCcEEEEEeccccccccCCCCCCeeEeeC
Q 005858 405 GGNDAFVFMISTRAGGVGLNLVAADTVIFYE 435 (673)
Q Consensus 405 ~~~~~~vlL~st~agg~GiNL~~a~~VI~~D 435 (673)
.+...+++.+..+.- +-+.....||+=+
T Consensus 74 -~g~~~IVVGTrsalf--~p~~~l~lIIVDE 101 (505)
T TIGR00595 74 -NGEILVVIGTRSALF--LPFKNLGLIIVDE 101 (505)
T ss_pred -cCCCCEEECChHHHc--CcccCCCEEEEEC
Confidence 344556555543331 3355666666554
No 321
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.67 E-value=0.47 Score=45.26 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCCEEEecHHHHHhccc--cc--cCCCccEEEEcCCccccC
Q 005858 148 PFDVLLTTYDVVLMDQG--FL--SQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 148 ~~dvvI~tye~l~~~~~--~l--~~~~~~~vIvDEaH~~KN 184 (673)
..|+||++|..+..... .+ ...+-.+||+||||++-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 46999999998866522 11 233557999999999844
No 322
>PRK13342 recombination factor protein RarA; Reviewed
Probab=86.54 E-value=4.3 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=20.0
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
...+|..+.|+|||..+-.+...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999998877654
No 323
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.53 E-value=2 Score=41.29 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=26.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
-++...|.+|||...|-.+..+... ..+++|..|..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEeccc
Confidence 3677899999999777766655443 35688888864
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.51 E-value=6.2 Score=41.39 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.3
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
-++..+.|+|||..+.+++..+....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 78888999999999999999886433
No 325
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.45 E-value=3.7 Score=49.35 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcC--CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLL--GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~--~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|.+-+..++..+.. ..+.||.-++|+|||..+=.++..+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 55556666653322 35789999999999999988887663
No 326
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=1.2 Score=48.25 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
++-+|+-+.|.|||+.+-+++.+.. -.+-=|.|.++...|.-|-++.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 4568999999999999999998763 3467778899999887666543
No 327
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=86.30 E-value=7.8 Score=45.36 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+.-+++--++|+|||.|...+|..-.
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~ 418 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESF 418 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHH
Confidence 456788999999999999988875543
No 328
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.05 E-value=9.9 Score=42.46 Aligned_cols=137 Identities=18% Similarity=0.090 Sum_probs=78.6
Q ss_pred cCCcCCCcHHHHHHHHHHHHHhcCCCC------eEEECCCcchHHHHHHHHHHHhh-hcCCCCCCEEEEECcc----cHH
Q 005858 31 FGVTAELKPHQVEGLSWLIRRYLLGVN------VLLGDEMGLGKTLQAISFLSYLK-FSQMSPGPFLVLCPLS----VTD 99 (673)
Q Consensus 31 ~~~~~~L~~~Q~~gv~~l~~~~~~~~~------~iLade~GlGKTl~ai~~i~~l~-~~~~~~~~~LIV~P~s----ll~ 99 (673)
.+....|-|||+-.+.-|...+.++.+ +++...=|=|||..+.++..+.. ........+.|++|.- .+-
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 466788999999998777755554433 57888899999998765554432 2223444588888862 122
Q ss_pred HHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHH-------HHHhccccccCCCcc
Q 005858 100 GWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYD-------VVLMDQGFLSQIPWC 172 (673)
Q Consensus 100 ~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye-------~l~~~~~~l~~~~~~ 172 (673)
+-.+.+-+-.+++.... ....+-..+++. .+..+.......+..
T Consensus 136 ~~ar~mv~~~~~l~~~~-----------------------------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~ 186 (546)
T COG4626 136 NPARDMVKRDDDLRDLC-----------------------------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSV 186 (546)
T ss_pred HHHHHHHHhCcchhhhh-----------------------------ccccceeEEEecccceeeeeeccCCCcccCCCcc
Confidence 22222222122111000 000011112221 123445667778899
Q ss_pred EEEEcCCccccCcccHHHHHHHhhc
Q 005858 173 YTIIDEAQRLKNPSSVLYNVLREHF 197 (673)
Q Consensus 173 ~vIvDEaH~~KN~~s~~~~~l~~~~ 197 (673)
++|+||-|.++++. ..+..+...+
T Consensus 187 ~~I~DEih~f~~~~-~~~~~~~~g~ 210 (546)
T COG4626 187 GAIIDELHLFGKQE-DMYSEAKGGL 210 (546)
T ss_pred eEEEehhhhhcCHH-HHHHHHHhhh
Confidence 99999999999875 5555555433
No 329
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.75 E-value=2.6 Score=40.09 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=34.2
Q ss_pred ccccCCCccEEEEcCCccccCcc----cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHH
Q 005858 164 GFLSQIPWCYTIIDEAQRLKNPS----SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWAL 220 (673)
Q Consensus 164 ~~l~~~~~~~vIvDEaH~~KN~~----s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~l 220 (673)
..+..-.+|+||+||.-..-+.. ......+.. .+..--++|||.-.+..+.|+..+
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-RPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhCce
Confidence 33455688999999987654422 334445543 344457999998655444444433
No 330
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.74 E-value=5.1 Score=36.83 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=26.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.++.-+.|+|||..+..++..... ..++++++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 367778999999999999887754 34566666554
No 331
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.73 E-value=7 Score=47.32 Aligned_cols=127 Identities=14% Similarity=0.040 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH----
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE---- 366 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~---- 366 (673)
.++.|......++..... ....+.......+|||..+....+-.....|.+++|.+..+..+....+.+.
T Consensus 452 ~T~~Q~~aI~~I~~d~~~------~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMES------PRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCHHHHHHHHHHHhhhcc------cCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 466777777666543211 1111222334558999987655444444678899999999877766655544
Q ss_pred hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCC
Q 005858 367 LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQ 436 (673)
Q Consensus 367 ~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~ 436 (673)
..++.+..++|.++..++.+.++.+. .+...+++.+.......+.+.....||+=+.
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~-------------~g~~dIVIGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELA-------------SGKIDILIGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHH-------------cCCceEEEchHHHhhCCCCcccCCEEEeecc
Confidence 34677888999999988888888887 3556677777766666677777776666433
No 332
>CHL00206 ycf2 Ycf2; Provisional
Probab=85.71 E-value=4.5 Score=51.56 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+|.+|..++|+|||+.|=+++... .-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 4688999999999999998888765 3577777667777665
No 333
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.49 E-value=2.3 Score=43.56 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
-|+.+..+..+......+...+|..++|+|||..+-++...+ ..|++.++
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 456666666777777778899999999999999999887643 35666664
No 334
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.42 E-value=1.3 Score=45.17 Aligned_cols=23 Identities=43% Similarity=0.364 Sum_probs=20.0
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
.++|..++|+|||..|--++.++
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Confidence 47899999999999888777776
No 335
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.40 E-value=6.8 Score=40.24 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=28.7
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc----ccHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL----SVTDGWVS 103 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~----sll~~W~~ 103 (673)
....+....|+|||.....++..+... ...+.+|... ..+.||..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHH
Confidence 346788889999999888777666422 2345555442 35566654
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=85.39 E-value=2.7 Score=46.55 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=36.3
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
.-.+|.-++|+|||..++.++...... ..++|.|.-.....++.....++.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERLG 131 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHcC
Confidence 346899999999999999998876522 356788877666666655554443
No 337
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.22 E-value=3 Score=46.94 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=65.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-----ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-----SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMY 132 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-----sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~ 132 (673)
.+.--+=--|||...+.+|+.+...-. .=.+..|+-. .+.......+++|+|.-.+....+..-
T Consensus 205 TVFLVPRRHGKTWf~VpiIsllL~s~~-gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI---------- 273 (668)
T PHA03372 205 TVFLVPRRHGKTWFIIPIISFLLKNII-GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI---------- 273 (668)
T ss_pred eEEEecccCCceehHHHHHHHHHHhhc-CceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE----------
Confidence 344446678999999998887764322 2236677663 334555566789998765532211100
Q ss_pred HHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecC
Q 005858 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208 (673)
Q Consensus 133 ~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGT 208 (673)
.... +..+..++..| -.....++...|++++|||||-+|-..-...--+.. .+....|.+|-|
T Consensus 274 -------~~s~-pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~-q~~~KiIfISS~ 336 (668)
T PHA03372 274 -------SIDH-RGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLA-QNTTKIIFISST 336 (668)
T ss_pred -------EEec-CCCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhc-ccCceEEEEeCC
Confidence 0000 00001111111 012334566789999999999987533111111111 233445667655
No 338
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=84.99 E-value=2.8 Score=47.03 Aligned_cols=27 Identities=37% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
...|.+|.-++|+|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 346789999999999999988888774
No 339
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.79 E-value=2 Score=48.03 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=38.5
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEEECcccHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVLCPLSVTDGWVS 103 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV~P~sll~~W~~ 103 (673)
.+.-.|+....|+|||..|+.=+++|.... ...+|+||+.|+.+......
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 345567888999999999998887776433 45678999999988765543
No 340
>CHL00176 ftsH cell division protein; Validated
Probab=84.74 E-value=6.7 Score=45.43 Aligned_cols=25 Identities=36% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+|..++|+|||..+=+++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999998887654
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.21 E-value=22 Score=40.08 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
+....|...+|.|||.++..++..+...+. .+.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~-gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHA-PRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCceEEEe
Confidence 344567788999999999888876644322 23345543
No 342
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=83.83 E-value=49 Score=38.08 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=86.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCc----hHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMT----QTLDILQDFL 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~----~~ld~l~~~L 365 (673)
++|..|+.....+..+.... ...+..--....|||..+..--+-.....|.++.+....- +..+-+.++|
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~------~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l 335 (677)
T COG1200 262 KLTNAQKRVIKEILADLASP------VPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWL 335 (677)
T ss_pred CccHHHHHHHHHHHhhhcCc------hhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHh
Confidence 35667877777766542110 0000111123479998776655555668898998888753 4557788888
Q ss_pred HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe
Q 005858 366 ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF 433 (673)
Q Consensus 366 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~ 433 (673)
...|+.+..++|+++.++|.++..+.. ++...+++.+-...-..+++++.-.||+
T Consensus 336 ~~~~i~V~lLtG~~kgk~r~~~l~~l~-------------~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 336 EPLGIRVALLTGSLKGKARKEILEQLA-------------SGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred hhcCCeEEEeecccchhHHHHHHHHHh-------------CCCCCEEEEcchhhhcceeecceeEEEE
Confidence 888999999999999999999999887 4556666665555677777777666665
No 343
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.79 E-value=28 Score=36.69 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=24.3
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+.-..|.|||.++..++..+... .+.+++++
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 3466799999999999998887633 24456664
No 344
>PRK10865 protein disaggregation chaperone; Provisional
Probab=83.48 E-value=6.3 Score=47.49 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHh--cCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRY--LLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~--~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|..-+..++.-+ ....+.||..++|+|||..+-+++..+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 333455555422 2345789999999999999988887663
No 345
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.46 E-value=7 Score=49.59 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=43.5
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECcccH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLSVT 98 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~sll 98 (673)
.....|-+-|++++..++.. .++-++|.-..|+|||.++-+++..+.... .....++.++|.+-.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 33457999999999876653 135678888999999999766655443211 122346778887544
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=83.33 E-value=3.1 Score=39.74 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=37.1
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
.++..++|+|||..++.++...... ..+++++.......+..+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHcC
Confidence 4788899999999999988776532 356899988777777666665543
No 347
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=83.19 E-value=7.8 Score=41.36 Aligned_cols=40 Identities=28% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|...+..+......+. ..++..+.|+|||..+-.++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444444443333 358899999999999999988875
No 348
>PRK10689 transcription-repair coupling factor; Provisional
Probab=83.19 E-value=11 Score=46.76 Aligned_cols=124 Identities=12% Similarity=-0.000 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh--
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL-- 367 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~-- 367 (673)
+.++.|...+..++.... .....+.......++||..+....+......|.+++|.+..+..+..+.+.+..
T Consensus 600 ~~T~~Q~~aI~~il~d~~------~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMC------QPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred CCCHHHHHHHHHHHHHhh------cCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 356788887777665421 111122233345689999765544444446788999999988776666555543
Q ss_pred --CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeE
Q 005858 368 --RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVI 432 (673)
Q Consensus 368 --~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI 432 (673)
.++.+..+.|..+.+++.++++... .+...|++.+.......+++.....+|
T Consensus 674 ~~~~v~i~~l~g~~s~~e~~~il~~l~-------------~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 674 ANWPVRIEMLSRFRSAKEQTQILAEAA-------------EGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred ccCCceEEEEECCCCHHHHHHHHHHHH-------------hCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567778999999999988888776 345567777665555455555544444
No 349
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=83.18 E-value=5.8 Score=45.59 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=62.1
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
...|...|..|...++.. .-.|+..++|+|||++++-++..+.... ...-|+||||-. +.++|.-.-+..+.
T Consensus 376 ~~ildsSq~~A~qs~lty----elsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~q 451 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTY----ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYHQ 451 (1025)
T ss_pred ceeecHHHHHHHHHHhhh----hhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhcC
Confidence 466788999999887765 5678889999999999999988886544 345689999985 67888876665432
Q ss_pred CCCeEEEEeCChHHHHH
Q 005858 110 PKLEVLRYVGEREQRRN 126 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~ 126 (673)
...++ ..|+....+.
T Consensus 452 -rpsIm-r~gsr~~spy 466 (1025)
T KOG1807|consen 452 -RPSIM-RQGSRFFSPY 466 (1025)
T ss_pred -CceEE-EeccccCCHH
Confidence 33333 4454444333
No 350
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=83.18 E-value=0.62 Score=49.86 Aligned_cols=47 Identities=26% Similarity=0.440 Sum_probs=37.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCC-----CChHHHHHHhhhhcc
Q 005858 198 LMPRRLLMTGTPIQNNLSELWALMHFCMPSVF-----GTLNQFLSTFKDAVH 244 (673)
Q Consensus 198 ~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~-----~~~~~f~~~f~~~~~ 244 (673)
+.++..++||||+.|.+.|+|++.+++.++.+ ..++.|...|+....
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast~g~V~~ 523 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWASTFGDVTT 523 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHHHHHHHH
Confidence 34556899999999999999999999988754 356778888877543
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=83.17 E-value=5 Score=40.74 Aligned_cols=27 Identities=22% Similarity=0.044 Sum_probs=19.4
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..|..+++..+.|+|||..+-.++..+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 346678888899999997655555444
No 352
>PRK11054 helD DNA helicase IV; Provisional
Probab=82.96 E-value=2.7 Score=49.09 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC-CCCCEEEEECcccHHHHHHH-HHHHC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM-SPGPFLVLCPLSVTDGWVSE-MAKFT 109 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~-~~~~~LIV~P~sll~~W~~E-~~k~~ 109 (673)
..|.+.|.++|.. . .++.++....|+|||.++++-+.++...+. .+..+|++|......+..++ +....
T Consensus 195 ~~L~~~Q~~av~~-----~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN-----G-EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC-----C-CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 5689999999842 1 234566666899999999999988875543 34568999997666554443 44433
No 353
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.74 E-value=2.2 Score=44.87 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=34.7
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE-E-CcccH-HHHHHHH----HHHCCCCeEEEEeCChHH
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL-C-PLSVT-DGWVSEM----AKFTPKLEVLRYVGEREQ 123 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV-~-P~sll-~~W~~E~----~k~~p~~~v~~~~g~~~~ 123 (673)
.--=|.|||.+++|++.++...+ .+ +|+| + |.+-+ .-...++ .+-.|++.+.-+.-....
T Consensus 8 ~GKGGVGKTT~aaA~A~~lA~~g--~k-vLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l 74 (322)
T COG0003 8 TGKGGVGKTTIAAATAVKLAESG--KK-VLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKAL 74 (322)
T ss_pred ecCCcccHHHHHHHHHHHHHHcC--Cc-EEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHH
Confidence 33458999999999988887655 34 5555 3 33333 2222222 344467776665444433
No 354
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=82.69 E-value=8.5 Score=49.44 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=44.5
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC-CCCCEEEEECcccH
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM-SPGPFLVLCPLSVT 98 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~-~~~~~LIV~P~sll 98 (673)
....|-+-|++++..++.. .++-.+|.--.|+|||.+.-+++..+..... ....++.++|..-.
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 3467999999999877753 1346788889999999988777666543221 22346778897644
No 355
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=82.47 E-value=2.6 Score=40.36 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=31.4
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
..+.|.+|..++|+|||..+++++..+... ..+++.+. ...+.++++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEee----cCceecccc
Confidence 346788999999999999999999888653 24556653 334445554
No 356
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=82.37 E-value=10 Score=44.41 Aligned_cols=109 Identities=20% Similarity=0.138 Sum_probs=80.9
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR- 368 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~- 368 (673)
.+...|...+..+.... .......-...++|||..+..+++......|+.+||...-......+...++.+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~--------~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSL--------GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccCHHHHHHHHHHHHhc--------ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh
Confidence 45668888888776541 111111112345899999999999999999999999998877766666666544
Q ss_pred CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 369 KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 369 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
|.++..++++.+..+|.....+.. .+..+|++.+-.|.
T Consensus 270 g~~v~vlHS~Ls~~er~~~W~~~~-------------~G~~~vVIGtRSAl 307 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRVWRRAR-------------RGEARVVIGTRSAL 307 (730)
T ss_pred CCChhhhcccCChHHHHHHHHHHh-------------cCCceEEEEechhh
Confidence 889999999999999999888887 56777777665443
No 357
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=82.31 E-value=7.8 Score=38.57 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCCEEEE-E-CcccHHHHHHHHHH
Q 005858 63 EMGLGKTLQAISFLSYLKFSQMSPGPFLVL-C-PLSVTDGWVSEMAK 107 (673)
Q Consensus 63 e~GlGKTl~ai~~i~~l~~~~~~~~~~LIV-~-P~sll~~W~~E~~k 107 (673)
-=|.|||..+++++..+...+ +++.+| | |..-+..|.+-..+
T Consensus 10 KGGaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhccc
Confidence 349999999999999986544 344554 3 55667799665433
No 358
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=3 Score=46.93 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHHHhc--------CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYL--------LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~--------~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
....+..++++.|.+.... ...+.+|+.++|+|||+.+-+++..+ ..+++-|-...+++.|.-|..
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGese 321 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESE 321 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHH
Confidence 3356677788888765433 34478999999999999999988755 345665555599999988876
Q ss_pred HHC
Q 005858 107 KFT 109 (673)
Q Consensus 107 k~~ 109 (673)
+-.
T Consensus 322 k~i 324 (494)
T COG0464 322 KNI 324 (494)
T ss_pred HHH
Confidence 533
No 359
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.18 E-value=6.1 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.||..++|+|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999988887764
No 360
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.96 E-value=4.8 Score=40.50 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCCEEEE--ECcccH
Q 005858 63 EMGLGKTLQAISFLSYLKFSQMSPGPFLVL--CPLSVT 98 (673)
Q Consensus 63 e~GlGKTl~ai~~i~~l~~~~~~~~~~LIV--~P~sll 98 (673)
-=|.|||..+.+++..+...+ +++|+| +|.+.+
T Consensus 10 kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~L 44 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLL 44 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHH
Confidence 449999999999999887554 457776 665554
No 361
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=81.74 E-value=4.1 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=20.1
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.||..++|+|||..+-++...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999888877654
No 362
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.54 E-value=6.1 Score=41.34 Aligned_cols=126 Identities=22% Similarity=0.294 Sum_probs=68.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKE 137 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 137 (673)
.++.--.|+|||.+..-++.+++..+ ..+|+.+--.--.--.++++-|...+.+-++.+....
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~-------------- 204 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGA-------------- 204 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCC---CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCC--------------
Confidence 35667899999999988888887433 4455554433334444555556533333333221110
Q ss_pred hhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH------HHHHHhhc-CCCcEEEE--ecC
Q 005858 138 QSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL------YNVLREHF-LMPRRLLM--TGT 208 (673)
Q Consensus 138 ~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~------~~~l~~~~-~~~~rllL--TGT 208 (673)
|---.-|+.+.. -...++|+|++|=|-|+-|....+ .+.+.... .+++.++| -||
T Consensus 205 ------------DpAaVafDAi~~----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 205 ------------DPAAVAFDAIQA----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred ------------CcHHHHHHHHHH----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 000011222221 223467999999999998755432 22222211 23555544 588
Q ss_pred CCCCCHHH
Q 005858 209 PIQNNLSE 216 (673)
Q Consensus 209 Pi~N~~~E 216 (673)
-=||.+..
T Consensus 269 tGqnal~Q 276 (340)
T COG0552 269 TGQNALSQ 276 (340)
T ss_pred cChhHHHH
Confidence 77777654
No 363
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.51 E-value=6.6 Score=46.44 Aligned_cols=26 Identities=35% Similarity=0.261 Sum_probs=21.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.+|.-++|+|||..+-++.....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999888876553
No 364
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=81.35 E-value=1.9 Score=50.50 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECcc-cHHHHHHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLS-VTDGWVSEMAK 107 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~s-ll~~W~~E~~k 107 (673)
.|-|-|+++|.+. .+.+++....|+|||.+.+.-+.++... +..+..+|+|+.+. .......-+.+
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 4789999998531 3566777779999999999999998754 44455688888742 33334444433
No 365
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.21 E-value=7.5 Score=37.32 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=41.4
Q ss_pred HHHHHHHhc-CCCCeEEECCCcchHHHHHHHHHHHhhhcC-------CCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 45 LSWLIRRYL-LGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-------MSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 45 v~~l~~~~~-~~~~~iLade~GlGKTl~ai~~i~~l~~~~-------~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
+.|++..+. .|.-++++.+.|+|||..++.++..+.... ....++|+|..-.-..++.+-+....
T Consensus 21 ~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 21 LDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp --EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred cceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 334444443 344588999999999999999888776321 14567888888777777777777665
No 366
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.16 E-value=5.4 Score=41.64 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.5
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+|.-+.|+|||..+.+++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999998887765
No 367
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=81.02 E-value=11 Score=37.40 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
..+|..+.|+|||-..-++...+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36889999999999877777666543
No 368
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=80.99 E-value=1.5 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=19.6
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.||..++|+|||..+-.+....
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999887766554
No 369
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.77 E-value=12 Score=40.50 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=37.9
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEe
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYV 118 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~ 118 (673)
.+++-=.|+|||.++.-++.+++.. ..+ +|+||--.--+.-.++++.......+-+|.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~--~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKK--GKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHc--CCc-eEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 4567778999999999999999762 234 566655443444555666665444554444
No 370
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=80.75 E-value=6.3 Score=45.11 Aligned_cols=128 Identities=10% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHH----HHHHCCCCeEEEEeCChHHHHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSE----MAKFTPKLEVLRYVGEREQRRNIRRT 130 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E----~~k~~p~~~v~~~~g~~~~~~~~~~~ 130 (673)
+-.+..-+=--|||..+...+..+.... ....+++++|- .+...--+| +++|+|...+-...|.. + .
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~-~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I-~- 326 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATF-RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----I-S- 326 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhC-CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----E-E-
Confidence 3456666778899998886666554222 23458899995 444444444 45566543332222210 0 0
Q ss_pred HHHHHHhhhccCCCCCCC-CCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhh-cCCCcEEEEecC
Q 005858 131 MYEHVKEQSQMSNVSPLP-FDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREH-FLMPRRLLMTGT 208 (673)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~-~~~~~rllLTGT 208 (673)
+ .. .... -.+...| . ..........++++||||||.++.. .....+-.+ -.....|++|-|
T Consensus 327 -i-------~f---~nG~kstI~FaS---a-rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 327 -F-------SF---PDGSRSTIVFAS---S-HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred -E-------Ee---cCCCccEEEEEe---c-cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecC
Confidence 0 00 0001 1222221 1 2233456668999999999999762 233332211 123456777765
No 371
>PRK14873 primosome assembly protein PriA; Provisional
Probab=80.70 E-value=8.5 Score=44.82 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=58.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-C-CcEEEEeCCcCHHHHHHHHHhhc
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR-K-YSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g-~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
.|||..+..+++......|+.+||...-......+...|+.+ | ..+..+++..+..+|.+...+..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 789999999999999999999999998888877777777655 4 67999999999999999888776
No 372
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=80.62 E-value=1.4 Score=52.06 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccH----HHHHHHHHHHCCCCeEEEEeCChHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVT----DGWVSEMAKFTPKLEVLRYVGEREQRRNIRR 129 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll----~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~ 129 (673)
..+.++.+++|.|||+.+=..+.......+. +.+.+|+|. +++ ..|..-+. .|+.++.-..|+.....
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~---- 1015 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDV---- 1015 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCCh----
Confidence 4567889999999999875554444334433 568999996 444 55654432 25667766666543221
Q ss_pred HHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccC----CCccEEEEcCCccccCc
Q 005858 130 TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQ----IPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~----~~~~~vIvDEaH~~KN~ 185 (673)
......+++|||++..-........ ..+..+|+||.|.++..
T Consensus 1016 --------------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 --------------KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 1223468999999877443221111 12457999999998654
No 373
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=80.34 E-value=20 Score=38.10 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHHhcC-CCCeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 37 LKPHQVEGLSWLIRRYLL-GVNVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~-~~~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
+||+|...-+.+...-.. ....++..+.|+|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888777666664222 12456788999999999999999886543
No 374
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=80.24 E-value=2.7 Score=41.78 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=26.7
Q ss_pred CccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHH
Q 005858 170 PWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLS 215 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~ 215 (673)
..+++||||++.+-... ..- +.. ......+.+-|-|.|-...
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~-~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLS-LSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHh-hccCcceEEEECchhccCC
Confidence 57899999999864322 112 332 3344568888999886433
No 375
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=80.20 E-value=6 Score=39.57 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
+.-.++..++|+|||..++.++..... ...+++++.-.....+..+.+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHHCC
Confidence 345688899999999999999866533 2456788876666666666665543
No 376
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=79.82 E-value=11 Score=45.52 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhc--CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYL--LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~--~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|..-+..++..+. ...+.+|.-++|+|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3344556655332 245789999999999999988887663
No 377
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=11 Score=38.67 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=36.5
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
|.+|..++|+||+..|-+++..- ...+.-|....+++.|.-|-++..
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHH
Confidence 57889999999999998887654 245666667788999988776544
No 378
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=79.76 E-value=16 Score=40.65 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|...+.++......+. ..|+..+.|+|||..+..++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5566666666555443 3578899999999999999988853
No 379
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=79.59 E-value=2.8 Score=49.68 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..|.+|.-++|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 4568899999999999998888765 2467777666665554
No 380
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=79.45 E-value=6.3 Score=40.80 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=25.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+++..+|+|||.++..++.++....+. .++.+|.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 35678899999999999998887644211 3445554
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=79.33 E-value=15 Score=37.49 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.-.+++-++|+|||..++.++...... ..+++.+.-
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 346889999999999999988765432 346788874
No 382
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.31 E-value=5.2 Score=43.12 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.|..++..+......+ ...++..+.|+|||..+-+++..+.
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555555544433 2577999999999999988877664
No 383
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=79.19 E-value=9.4 Score=41.34 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=20.9
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.|..+.+..+.|+|||..+-.++..+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 466688899999999987777666553
No 384
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=78.81 E-value=5 Score=42.31 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.+.|.+. |......+.+.+++-.||+|||..+-+++..+.
T Consensus 129 ~~~~~~~~---L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 129 MTEAQASV---IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 44445544 444444577899999999999999988887663
No 385
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=78.28 E-value=16 Score=48.18 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=40.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~sll 98 (673)
...|-+-|++++..++.. .++-+++--..|+|||.+..+++..+.... .....++.++|.+-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 467999999999877553 134567778899999998855443332111 122356777887543
No 386
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=77.99 E-value=5.5 Score=47.15 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECcc-cHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLS-VTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~s-ll~~W~~E~~k~~ 109 (673)
.|-|-|+++|.+ ..+.+++....|+|||.+.+.-+.++... +..+..+|+|+.+. .......-+.+..
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999999852 23567777788999999999999988764 33455678887753 3344444444443
No 387
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=77.96 E-value=9.2 Score=41.49 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=25.8
Q ss_pred CccEEEEcCCccccCcc---cHHHHHHHhhcCCCcEEEEec--CC
Q 005858 170 PWCYTIIDEAQRLKNPS---SVLYNVLREHFLMPRRLLMTG--TP 209 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~---s~~~~~l~~~~~~~~rllLTG--TP 209 (673)
..|++++|-.|.+.+.. ...+..+.........|++|+ +|
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 45889999999987753 233344443333445889998 55
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=77.74 E-value=9.3 Score=45.37 Aligned_cols=37 Identities=27% Similarity=0.218 Sum_probs=26.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
+.+.+|..+.|+|||..+-+++..+ ..+++.|....+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 4578999999999999887776655 244555544333
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=77.59 E-value=50 Score=36.28 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.9
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..++-..|+|||.++..++.++...+ ..+++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcC
Confidence 45778999999999999988876432 34555544
No 390
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=77.56 E-value=24 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 41 QVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
|.+++..+......+ ..-++..+.|+||+..+.+++..+...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 555555665555444 356888899999999999999988643
No 391
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=77.36 E-value=12 Score=37.41 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCCCEEEE--ECcccHHHHHH
Q 005858 63 EMGLGKTLQAISFLSYLKFSQMSPGPFLVL--CPLSVTDGWVS 103 (673)
Q Consensus 63 e~GlGKTl~ai~~i~~l~~~~~~~~~~LIV--~P~sll~~W~~ 103 (673)
-=|.|||.+++.++..+...+ ++++|| -|...+..|..
T Consensus 10 KGGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHH
Confidence 349999999999998886443 356666 34566778864
No 392
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=77.13 E-value=6.7 Score=44.20 Aligned_cols=25 Identities=36% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..|.+|..++|+|||..+-+++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999998887654
No 393
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.05 E-value=37 Score=39.34 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|...+..|......+. ..|+..+.|+|||..+..++..+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444444433332 357999999999998888888774
No 394
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.85 E-value=15 Score=37.43 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=35.1
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
+..+.-++|+..+|+|||..++.++..+.... ..+++++.-.....++...+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHH
Confidence 34455678999999999999998887764331 35678887654444444444
No 395
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=76.77 E-value=14 Score=40.01 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=21.1
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|..+++..+.|+|||..+-.++.....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4566788888999999877776665543
No 396
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=76.68 E-value=3.8 Score=41.77 Aligned_cols=49 Identities=29% Similarity=0.473 Sum_probs=33.4
Q ss_pred HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 51 RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 51 ~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
.-..|+..+||.++|+|||..|+++...|- ..-| .||..--.-+..|++
T Consensus 60 KkmaGravLlaGppgtGKTAlAlaisqELG----~kvP---FcpmvgSEvyS~EvK 108 (456)
T KOG1942|consen 60 KKMAGRAVLLAGPPGTGKTALALAISQELG----PKVP---FCPMVGSEVYSNEVK 108 (456)
T ss_pred hhccCcEEEEecCCCCchhHHHHHHHHHhC----CCCC---cccccchhhhhhhhh
Confidence 334577889999999999999999998872 2233 466543333444443
No 397
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=76.66 E-value=6.8 Score=46.37 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECcc-cHHHHHHHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLS-VTDGWVSEMAKF 108 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~s-ll~~W~~E~~k~ 108 (673)
.|-|-|+++|.+ ..+..++....|+|||.+.+.-+.+|... +..+..+|+|+-+. ......+-+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 589999999852 13466777778999999999999988753 44455588887753 333344444443
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=76.57 E-value=6.5 Score=39.53 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=37.2
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
+..|.-.+|+..+|+|||..++-++...... ..+++++.-...-.+-.+.+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHHHc
Confidence 3344557899999999999999988766432 35678887655445555545443
No 399
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=76.55 E-value=22 Score=37.36 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.9
Q ss_pred CeEEECCCcchHHHHHHHHHHHhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.-++..+-|+|||..+..++..+.
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHc
Confidence 348899999999999999998874
No 400
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=76.35 E-value=28 Score=36.17 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
+|...|-.++..+......++ .++|... |.||+..|..++..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 356677777777776665554 3555544 6899999999998886443
No 401
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=76.12 E-value=24 Score=39.49 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhc-CC----CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCC-EEEEECc
Q 005858 39 PHQVEGLSWLIRRYL-LG----VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGP-FLVLCPL 95 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~~-~~----~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~-~LIV~P~ 95 (673)
|+|+-.+..+..... .+ ..++|.-.=|-|||..+.++..+.....+..++ ++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 678866655543211 11 236777788999999988877665544444444 5555554
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=75.90 E-value=14 Score=40.79 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=25.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+++...|+|||.++.-++.++.... ..++++|+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~--G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK--KKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc--CCcEEEEEc
Confidence 46888999999999999998886541 234555543
No 403
>PRK04132 replication factor C small subunit; Provisional
Probab=75.56 E-value=14 Score=44.19 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=29.2
Q ss_pred CccEEEEcCCccccCcccHHHHHHHhhc---CCCcEEEEecCCCCCCHHHHHH
Q 005858 170 PWCYTIIDEAQRLKNPSSVLYNVLREHF---LMPRRLLMTGTPIQNNLSELWA 219 (673)
Q Consensus 170 ~~~~vIvDEaH~~KN~~s~~~~~l~~~~---~~~~rllLTGTPi~N~~~El~~ 219 (673)
++.++|+||+|++-. ....++...+ +...+++|+.++...-+.-+-+
T Consensus 630 ~~KVvIIDEaD~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 467999999999843 2233333333 3556788888876554444443
No 404
>PRK08939 primosomal protein DnaI; Reviewed
Probab=75.32 E-value=9.4 Score=40.02 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=27.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+.|.+|..++|+|||..+.+++..+...+ .+++++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEE
Confidence 45778999999999999999999886332 344555
No 405
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.27 E-value=30 Score=35.58 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=24.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.++.-..|.|||.++..++..+... .+.+++|+-
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~ 108 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAG 108 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeC
Confidence 4566899999999999998877533 244666653
No 406
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.91 E-value=21 Score=37.87 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHH------------hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 38 KPHQVEGLSWLIRR------------YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~------------~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+-|.+=+.-.+.. .....|++|..++|+|||+.|=|++... .-.||=|+-..++..+
T Consensus 156 L~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSElVqKY 225 (406)
T COG1222 156 LDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSELVQKY 225 (406)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHHHHHH
Confidence 34676655555433 1245789999999999999998887654 2346666666666443
No 407
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=74.87 E-value=12 Score=39.17 Aligned_cols=104 Identities=14% Similarity=0.033 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHHHhhhcCC------------CCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHH
Q 005858 63 EMGLGKTLQAISFLSYLKFSQM------------SPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRT 130 (673)
Q Consensus 63 e~GlGKTl~ai~~i~~l~~~~~------------~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~ 130 (673)
-=|+|||-.++.++..+...+. ..++..+|.+.+....-.+|-.-..-...+-++.+....+... ..
T Consensus 38 vGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~a~~-~~ 116 (311)
T TIGR00682 38 VGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKDAIL-LI 116 (311)
T ss_pred cCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHHHHH-HH
Confidence 3599999999999998865431 1233466666665444444532222111223344443222111 10
Q ss_pred HHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC
Q 005858 131 MYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN 184 (673)
. ...++|++|.--. |+. .--...++.|++|-..-+.|
T Consensus 117 -~------------~~~~~dviilDDG-fQh---~~l~rD~~IvlvD~~~~fgn 153 (311)
T TIGR00682 117 -L------------EQLDPDVIILDDG-LQH---RKLHRDVEIVVVDGQRPFGN 153 (311)
T ss_pred -H------------hcCCCCEEEECCC-CcC---ccccCCeEEEEECCCCCCCC
Confidence 0 1124677775321 111 11123567888887666666
No 408
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=74.64 E-value=13 Score=39.39 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHHhhhcCC-----------C-CCCEEEEECcccHHHHHHH---HHHHCCCCeEEEEeCChHHHHHHHH
Q 005858 65 GLGKTLQAISFLSYLKFSQM-----------S-PGPFLVLCPLSVTDGWVSE---MAKFTPKLEVLRYVGEREQRRNIRR 129 (673)
Q Consensus 65 GlGKTl~ai~~i~~l~~~~~-----------~-~~~~LIV~P~sll~~W~~E---~~k~~p~~~v~~~~g~~~~~~~~~~ 129 (673)
|+|||-.++.++..+...+. . .+..++|.|.+....-.+| +.+.+| ..++ .|....... +.
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~--V~~dR~~~~-~~ 122 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVI--VGPDRVAAA-RA 122 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEE--EeCcHHHHH-HH
Confidence 99999999999999976531 1 1226888888866666666 455666 4444 333322111 11
Q ss_pred HHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC----cccHHHHHHHhhcCCCcEEEE
Q 005858 130 TMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN----PSSVLYNVLREHFLMPRRLLM 205 (673)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN----~~s~~~~~l~~~~~~~~rllL 205 (673)
. .. ..+++++|.-- -|+.. --...++.|++|-.+-+.| |...+..-+.. +.....+++
T Consensus 123 ~-~~------------~~~~dviilDD-GfQh~---~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~-l~rAD~vi~ 184 (326)
T PF02606_consen 123 A-LK------------EFPADVIILDD-GFQHR---RLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSA-LKRADAVIV 184 (326)
T ss_pred H-HH------------HCCCCEEEEcC-Ccccc---cccCCcEEEEEeCCCCCcCCccCCCCcccCChhH-hCcccEEEE
Confidence 1 11 11257777542 22111 1123578999998887777 33333333333 444455777
Q ss_pred ecCCCCCC
Q 005858 206 TGTPIQNN 213 (673)
Q Consensus 206 TGTPi~N~ 213 (673)
|+.+-...
T Consensus 185 ~~~~~~~~ 192 (326)
T PF02606_consen 185 TGCDASDP 192 (326)
T ss_pred cCCCcchh
Confidence 88775433
No 409
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=74.62 E-value=33 Score=45.25 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=44.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
...|-+-|++++..++.. ...-.+|--..|+|||.++-+++..+... ...+++++|..-.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~lAPTgrA 486 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQIITAGSLS 486 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEEeCCHHH
Confidence 467899999999877654 23457788889999999888877666433 3568899998654
No 410
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=74.27 E-value=6.3 Score=46.22 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEEC-cccHHHHHHHHHHHC
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCP-LSVTDGWVSEMAKFT 109 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P-~sll~~W~~E~~k~~ 109 (673)
|-|-|+.+|.+ ..+.+++-...|+|||.+.+.-+.++... +..+..+|+|+. ........+.+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 77899998853 13567777788999999999999888754 334555777755 344455555555443
No 411
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=73.73 E-value=7.6 Score=41.85 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHHHhc--CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 36 ELKPHQVEGLSWLIRRYL--LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~--~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
+|-+-|+.++.+++.... .+....|.-.-|+|||...=++...+.. ...+++++||..+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHH
Confidence 467889999988876653 4556788889999999998888877743 34568999998665
No 412
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.46 E-value=19 Score=38.45 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=54.8
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhh
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQ 138 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 138 (673)
+++.=.|.|||.+..-++.+++..+ .+ +.+||--.--.---+++..+....++-.|.......+
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG--~K-~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dp------------- 168 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKG--YK-VALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADP------------- 168 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcC--Cc-eeEEeecccccchHHHHHHHhHhhCCeeEecccccch-------------
Confidence 4666789999999998888886544 34 4555554333333344555554444433322111110
Q ss_pred hccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccH
Q 005858 139 SQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSV 188 (673)
Q Consensus 139 ~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~ 188 (673)
+ .........|.+-+||+||||=+-|.+-..+.
T Consensus 169 -------------v----~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 169 -------------V----KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred -------------H----HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 0 01112234466678899999998887765543
No 413
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.45 E-value=27 Score=38.23 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=18.9
Q ss_pred eEEECCCcchHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l 79 (673)
.++.-..|+|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999998755
No 414
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=73.33 E-value=8.5 Score=40.61 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 47 WLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 47 ~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+|......+.+.+++-.+|+|||..+-+++..+
T Consensus 140 ~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 140 AIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 344444457889999999999998887777665
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.23 E-value=8.8 Score=43.11 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
|.-.++.-++|+|||..++-++......+ .++++|.--....+..+....+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANK---ERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCHHHHHHHHHHcC
Confidence 34578999999999999999998775332 46788887777777777776654
No 416
>PRK08760 replicative DNA helicase; Provisional
Probab=72.79 E-value=9.7 Score=42.59 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=39.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
|.-.+|+..+|.|||..++.++....... ..|++++..-.-..+|...+...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHh
Confidence 33468999999999999999987664222 35789998887778887776544
No 417
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.68 E-value=8.8 Score=40.12 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 46 SWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 46 ~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+|......+.+.+++-++|+|||..+-+++..+.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35555555678899999999999999988887764
No 418
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.48 E-value=5 Score=41.09 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 47 WLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 47 ~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+|......+++.+++-++|+|||.++.+++..+.
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 4444445577889999999999999999987764
No 419
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=72.46 E-value=8.8 Score=34.84 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=24.6
Q ss_pred HHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 48 LIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 48 l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.+....+.-.+|.-++|+|||..+=+++..+-
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 334444455667899999999999988887763
No 420
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=72.46 E-value=9.3 Score=42.45 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=36.2
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
-.+|.-++|+|||..++.++..+... .+++|.|.......|......++
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHc
Confidence 46899999999999999988776533 24688888776666665554443
No 421
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=72.42 E-value=5.3 Score=42.54 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCcCCCcHHHHHHHHHHHHHhc----CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 32 GVTAELKPHQVEGLSWLIRRYL----LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~----~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
||-++. ..++|..-+++... .|++.+++.++|+|||-.|++++..|- ..-||..+.-..+
T Consensus 25 GlVGQ~--~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG----~~~PF~~isgSEi 88 (398)
T PF06068_consen 25 GLVGQE--KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG----EDVPFVSISGSEI 88 (398)
T ss_dssp TEES-H--HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT----TTS-EEEEEGGGG
T ss_pred cccChH--HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC----CCCCeeEccccee
Confidence 444433 34555544444443 356789999999999999999998873 5567777765533
No 422
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=72.41 E-value=3.3 Score=39.58 Aligned_cols=34 Identities=24% Similarity=0.102 Sum_probs=19.0
Q ss_pred EECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 60 Lade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
|-.+=|-|||.....++..+...+. ..++|.+|.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~ 35 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPS 35 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCC
Confidence 3345699999877666655543332 458888886
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=72.40 E-value=8.1 Score=38.35 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
|.-.++.-++|+|||..++.++....... ..+++.|+-.....++.+.+..+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHcC
Confidence 44578899999999999999887665441 246788887777777777777654
No 424
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=71.92 E-value=11 Score=39.44 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCH
Q 005858 169 IPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNL 214 (673)
Q Consensus 169 ~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~ 214 (673)
.+-.+||+||||+ .....-+.+...+....+..+||++.|-++
T Consensus 242 L~dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 242 LNDAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCCeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 3457999999997 222222333334667788999999976544
No 425
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=71.34 E-value=22 Score=38.66 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=24.6
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.++.-..|+|||..++..+............+||+.|.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 35666789999998876555444332233557777775
No 426
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=71.05 E-value=46 Score=35.20 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHhcCCC-CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 37 LKPHQVEGLSWLIRRYLLGV-NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~-~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
+||+|...-..+......-. .-++..+.|+|||..+..++..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 57888777666665533323 3568899999999999999988864
No 427
>PRK09087 hypothetical protein; Validated
Probab=71.01 E-value=25 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=25.5
Q ss_pred cEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecC
Q 005858 172 CYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGT 208 (673)
Q Consensus 172 ~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGT 208 (673)
++|++|+.|.+......++..+.........+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 4789999998754444566666554455667888887
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.85 E-value=7.3 Score=39.91 Aligned_cols=44 Identities=32% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.+.|.+.+.+++.. .++..+++-++|+|||.++-+++..+.
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34677888887776653 233478999999999999998887763
No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.46 E-value=21 Score=38.50 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=60.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC-CCCeEEEEeCChHHHHHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT-PKLEVLRYVGEREQRRNIRRTMYEHVK 136 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~ 136 (673)
.++.-++|.||+..-+-++..+.. .+++|.|+-..-..||.--..+.. +..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~~~~------------------------ 147 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGLPTN------------------------ 147 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCCCcc------------------------
Confidence 478899999999988777777652 237999999888999988887775 222
Q ss_pred hhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC
Q 005858 137 EQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 137 ~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN 184 (673)
++.+.....+......+.+.+++++|+|-.+.+-+
T Consensus 148 -------------~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 148 -------------NLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred -------------ceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 23333333333334445567788999998887654
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.38 E-value=24 Score=41.56 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..|...+|.|||.++.-++..+..
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~ 211 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA 211 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH
Confidence 468889999999999888876643
No 431
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.33 E-value=23 Score=38.25 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=29.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc----ccHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL----SVTDGWVS 103 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~----sll~~W~~ 103 (673)
..+++.+.|+|||.++..++..+...+ .++.+|+-- ..+.||..
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHH
Confidence 356788999999999998887764432 345555442 23567744
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.17 E-value=22 Score=39.73 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
..|.-.+|.|||.++..++..+....
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhc
Confidence 45778999999999998887775433
No 433
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.11 E-value=34 Score=37.52 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=18.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
-..|.-.+|.|||.+...++..+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35688899999999987776644
No 434
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=69.83 E-value=24 Score=40.39 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=50.7
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCH-----HHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRA-----EERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~-----~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
.-||+|-..-..+..+.+.+...|+- .+|.|..+. .--.++++.|..... .+.+...|-+-...++
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~--------~g~GaiLlaVVGGKlS 700 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAE--------RGRGAILLAVVGGKLS 700 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhh--------cCCCeEEEEEeccccc
Confidence 45778888788888888888766542 222222110 003445666653211 1122323333345678
Q ss_pred cccCCCC--CCeeEeeCCCCC
Q 005858 421 VGLNLVA--ADTVIFYEQDWN 439 (673)
Q Consensus 421 ~GiNL~~--a~~VI~~D~~wn 439 (673)
+|||+.. +..|+.+.+|+-
T Consensus 701 EGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 701 EGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccccccccEEEEeecCCC
Confidence 9999997 999999999984
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=69.26 E-value=13 Score=35.81 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+-+.|...+.+++.. +...+++-++|+|||...-+++..+
T Consensus 9 ~~~~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4556677766655554 7789999999999999887776655
No 436
>PF12846 AAA_10: AAA-like domain
Probab=69.22 E-value=9.7 Score=39.21 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=33.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSE 104 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E 104 (673)
++++++.-.+|+|||..+..++..+...+ .+++|+=|+.-...|.+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 35788999999999999988887775444 456777666544444433
No 437
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=69.22 E-value=13 Score=37.84 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=38.5
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
..+...++.-++|+|||+-++-++...... ..|++.|.-...-..-.+.+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEESPEELLENARSFG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCCHHHHHHHHHHcC
Confidence 345567899999999999999999887655 367888877654444444444433
No 438
>PRK05595 replicative DNA helicase; Provisional
Probab=69.03 E-value=12 Score=41.47 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
|.-.+++..+|.|||..++.++...... ...+++++..-.-..++...+-
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEecCCCHHHHHHHHH
Confidence 3346899999999999999998765322 2357888887766666665543
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.86 E-value=44 Score=31.39 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=20.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
.++..++|+|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4677899999999999998877543
No 440
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=68.81 E-value=56 Score=28.78 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
.++.-..|.|||..+..+...+... ..++++|---. ..+.+++..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~---g~~V~~id~D~--~~~~~~~~~~~ 48 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK---GKPVLAIDADP--DDLPERLSVEV 48 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCc--hhhHHHHhhcc
Confidence 3567789999999999888887543 24455553222 44545554333
No 441
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=68.49 E-value=11 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 46 SWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 46 ~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.||......+.+.+++-++|+|||...-+++.++
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 4555555668899999999999999998887766
No 442
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=68.47 E-value=13 Score=41.59 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCC---CCeEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 41 QVEGLSWLIRRYLLG---VNVLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~---~~~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
|...+..|...+..+ .+-++..+=|+|||..+=-++..+-..+
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 344444444333333 3568888999999999988888775443
No 443
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=68.24 E-value=28 Score=35.82 Aligned_cols=23 Identities=39% Similarity=0.329 Sum_probs=20.2
Q ss_pred CCCCeEEECCCcchHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFL 76 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i 76 (673)
...|+||..++|+|||+.|-+++
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHh
Confidence 45789999999999999988776
No 444
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=67.97 E-value=15 Score=36.31 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=38.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
+.-.+++.++|+|||..++.++...... ..++++++...-..+-.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHcC
Confidence 3346788999999999999888664322 467889988777777666666554
No 445
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=67.66 E-value=24 Score=37.53 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.++.+|..+.|+|||..+=++...+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4568999999999999887777655
No 446
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=67.46 E-value=31 Score=38.04 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=28.9
Q ss_pred CcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHC
Q 005858 64 MGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFT 109 (673)
Q Consensus 64 ~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~ 109 (673)
-|+|||..-..=++++...+ ....++|-|-+. +.++..+-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~kn-Pd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKN-PDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCC-CCceEEEEeehHHHHHHHHHHHHHHH
Confidence 59999998877777775444 444577777654 4455554444444
No 447
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=67.28 E-value=74 Score=30.42 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=31.3
Q ss_pred cccCCCccEEEEcCCccccCcc----cHHHHHHHhhcCCCcEEEEecCCCCCCHHH
Q 005858 165 FLSQIPWCYTIIDEAQRLKNPS----SVLYNVLREHFLMPRRLLMTGTPIQNNLSE 216 (673)
Q Consensus 165 ~l~~~~~~~vIvDEaH~~KN~~----s~~~~~l~~~~~~~~rllLTGTPi~N~~~E 216 (673)
.+..-.||+||+||.-..-+.. ......+.. .+..--++|||--.+..+.|
T Consensus 110 ~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~-rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 110 VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh-CCCCCEEEEECCCCCHHHHH
Confidence 3445678999999987655432 234444443 34445799999854443333
No 448
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=7.2 Score=41.55 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=34.5
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
+|.+++.++|+|||+.|=+++.+.. -.|.=|.-..+++.|.-|-+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEechhhhhhhhccchHHH
Confidence 4789999999999999998887651 3344455556778897776553
No 449
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=67.00 E-value=11 Score=39.91 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=40.4
Q ss_pred CccccCcCCcCCCcHHHHHHH-HHHHHHh-cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 25 PVDAAEFGVTAELKPHQVEGL-SWLIRRY-LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 25 ~~~~~p~~~~~~L~~~Q~~gv-~~l~~~~-~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.....+.|+-++...--..|| -.|++.- ..|++.+++.++|+|||..|+++...|- ..-||.=+
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG----~dvPF~~i 98 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG----EDVPFVAI 98 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC----CCCCceee
Confidence 334445566655544444443 2344332 3456789999999999999999998882 34455444
No 450
>PRK09165 replicative DNA helicase; Provisional
Probab=66.87 E-value=18 Score=40.71 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=35.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCC------------CCCCEEEEECcccHHHHHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQM------------SPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~------------~~~~~LIV~P~sll~~W~~E~~ 106 (673)
-.||+..+|.|||..++.++........ ...+++++..-.-..++..-+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~l 280 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRIL 280 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHH
Confidence 3689999999999999988766643211 2457888877766666666553
No 451
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=66.63 E-value=28 Score=32.93 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=30.8
Q ss_pred HHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 50 RRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 50 ~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..-.....++|.-|+|+||++.|=++-.. .....+|++.|--..+-..+
T Consensus 17 ~~a~~~~pVlI~GE~GtGK~~lA~~IH~~---s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 17 RAASSDLPVLITGETGTGKELLARAIHNN---SPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHTTSTS-EEEECSTTSSHHHHHHHHHHC---STTTTS-EEEEETTTS-HHH
T ss_pred HHhCCCCCEEEEcCCCCcHHHHHHHHHHh---hhcccCCeEEEehhhhhcch
Confidence 33344578999999999999987665442 23345788888665554443
No 452
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=66.34 E-value=20 Score=39.64 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
|.-.+|+..+|.|||..++.++....... ..+++++..-.-..+....+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHHHH
Confidence 33468999999999999999887664322 35788888765555554444
No 453
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=66.12 E-value=16 Score=36.56 Aligned_cols=52 Identities=23% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
.|...+++.++|+|||..++-++...... ..++++|+-.....+..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHHHHHHHHHh
Confidence 34557889999999999999888765422 35678887665555555555443
No 454
>PHA02244 ATPase-like protein
Probab=65.93 E-value=28 Score=37.35 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.7
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..+...+|..++|+|||..+.+++..+ ..|++.|
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~I 150 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFM 150 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 346789999999999999998888764 3565555
No 455
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=65.73 E-value=51 Score=27.96 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=35.0
Q ss_pred CCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 345 GHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 345 g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
.++|+||+. +=.....+.++|...|++|..++=....+.|..+.+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t 63 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS 63 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 469999975 34567889999999999999988665565565554443
No 456
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=65.28 E-value=9.3 Score=41.58 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDG 100 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~ 100 (673)
..+.+|..++|+|||..+-+++..+. .+++.+....++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~ 204 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQK 204 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHh
Confidence 45789999999999999988887652 45566554444433
No 457
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=64.99 E-value=16 Score=38.06 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=19.0
Q ss_pred cCCCCeEEECCCcchHHHHHHHHH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFL 76 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i 76 (673)
..+.+.||+.+-|+|||...|-+.
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~ 110 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLC 110 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHH
Confidence 346678999999999999776544
No 458
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=64.90 E-value=58 Score=37.10 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHH--------HHHHHHCCCCeEEEEeC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWV--------SEMAKFTPKLEVLRYVG 119 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~--------~E~~k~~p~~~v~~~~g 119 (673)
.+|.+|..++|+|||..|=+++.++ .-|++=|.-..+++... +-|.+.......++|..
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiD 289 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFID 289 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEee
Confidence 3577888899999999999988877 35777776666664432 22344444555565543
No 459
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=64.85 E-value=18 Score=35.89 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
.|...+++.++|+|||..+..++...... ..++++|+......+..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHHH
Confidence 34557899999999999999887654322 3467777765555444444333
No 460
>PRK12608 transcription termination factor Rho; Provisional
Probab=64.62 E-value=36 Score=36.58 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=23.4
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
.|.+++|..+.|+|||..+..++..+..
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4677899999999999998888877743
No 461
>PRK13531 regulatory ATPase RavA; Provisional
Probab=64.07 E-value=11 Score=41.94 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 42 VEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 42 ~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.|.-+......+.+++|..++|+|||..|-++....
T Consensus 26 e~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 26 SHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 34444455555668899999999999999998888765
No 462
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=64.05 E-value=39 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=33.3
Q ss_pred CCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHH
Q 005858 345 GHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIR 389 (673)
Q Consensus 345 g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 389 (673)
+++|+||+. +=.....+.++|...|++|..++=....+.+..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 469999987 345678899999999999999986555444444443
No 463
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.99 E-value=11 Score=41.20 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+.|.+|..++|+|||..+-+++..+ ..+++.+.+..++..|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHh
Confidence 35678999999999999998877654 2456666555444433
No 464
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=63.72 E-value=34 Score=37.64 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+++...|.|||.++.-++.++.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 57889999999999999998864
No 465
>PRK13766 Hef nuclease; Provisional
Probab=62.95 E-value=2.1e+02 Score=34.25 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=59.7
Q ss_pred ccccCCcHHHHHHHHHH-HHhCCCeEEEEecCchHHHHHHHHHHhC-C---CcEEEEeCCcCHHHHHHHHHhhccchhHh
Q 005858 324 QNTASGKLVVLDLLLKK-LYNSGHRVLLFAQMTQTLDILQDFLELR-K---YSYERLDGSIRAEERFAAIRHFSVQSAIE 398 (673)
Q Consensus 324 ~~~~s~Kl~~l~~ll~~-~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g---~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 398 (673)
...++||..+...++.. +...+.++||.+............+... + ..+..++|.++..+|.++...
T Consensus 36 ~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-------- 107 (773)
T PRK13766 36 LPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-------- 107 (773)
T ss_pred cCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC--------
Confidence 34578898744333332 3356789999999876665554544432 3 478889999998887655432
Q ss_pred hhhhhcCCCCcEEEEEeccccc-----cccCCCCCCeeEeeCCC
Q 005858 399 RLYSEAGGNDAFVFMISTRAGG-----VGLNLVAADTVIFYEQD 437 (673)
Q Consensus 399 ~~~~~~~~~~~~vlL~st~agg-----~GiNL~~a~~VI~~D~~ 437 (673)
..|++++++..- .-+++...+.||+=+.+
T Consensus 108 ----------~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 108 ----------AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred ----------CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 237777765442 23455566677766655
No 466
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=62.91 E-value=17 Score=40.01 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 44 GLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 44 gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+..++.....+.+.||...+|+|||..|..++..+.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445556666688999999999999999988776653
No 467
>PHA00350 putative assembly protein
Probab=62.33 E-value=11 Score=40.87 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=13.5
Q ss_pred EEECCCcchHHHHHHHH
Q 005858 59 LLGDEMGLGKTLQAISF 75 (673)
Q Consensus 59 iLade~GlGKTl~ai~~ 75 (673)
++--.+|+|||+.|+..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 44557899999999973
No 468
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=62.07 E-value=11 Score=42.39 Aligned_cols=42 Identities=31% Similarity=0.404 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCC-eEEECCCcchHHHHHHHHHHHh
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVN-VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~-~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.|.|.+.+.+++.. ..| .+++-++|+|||.+.-+++..+
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 44678888888777664 344 5799999999999998887766
No 469
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=61.86 E-value=44 Score=35.35 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHHHhhhcCC------------C-CCCEEEEECcccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHH
Q 005858 64 MGLGKTLQAISFLSYLKFSQM------------S-PGPFLVLCPLSVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRT 130 (673)
Q Consensus 64 ~GlGKTl~ai~~i~~l~~~~~------------~-~~~~LIV~P~sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~ 130 (673)
=|+|||-.++.++..+...+. . .+| .+|.+.+...+-.+|-.-..-...+.++.|....+.. +..
T Consensus 60 GGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~~~~~~-~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~~~-~~~ 137 (325)
T PRK00652 60 GGTGKTPVVIALAEQLQARGLKPGVVSRGYGGKLEKGP-LLVDPDHTAAEVGDEPLLIARRTGAPVAVSPDRVAAA-RAL 137 (325)
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEECCCCCCCcCCCC-EEeCCCCChhhhCcHHHHhccCCCceEEEcCcHHHHH-HHH
Confidence 499999999999998875431 1 233 6666766555555564333322233444554322211 110
Q ss_pred HHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCc----ccHHHHHHHhhcCCCcEEEEe
Q 005858 131 MYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNP----SSVLYNVLREHFLMPRRLLMT 206 (673)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~----~s~~~~~l~~~~~~~~rllLT 206 (673)
. ...++|++|.--. |+. .--...++.|++|-..-+.|. ...+..-+.. +.....+++|
T Consensus 138 -~------------~~~~~dviilDDG-fQh---~~l~rdl~Ivl~d~~~~fgng~~LPaG~LREp~~~-l~rAd~vv~~ 199 (325)
T PRK00652 138 -L------------AAHGADIIILDDG-LQH---YRLARDIEIVVVDGQRGFGNGFLLPAGPLREPPSR-LKSVDAVIVN 199 (325)
T ss_pred -H------------hcCCCCEEEEcCC-ccC---cccCCCeEEEEECCCCCCCCCccCCCcCccCChhH-hccCCEEEEe
Confidence 0 1114677775311 111 011135688899987777772 2222222222 3334456777
Q ss_pred c
Q 005858 207 G 207 (673)
Q Consensus 207 G 207 (673)
+
T Consensus 200 ~ 200 (325)
T PRK00652 200 G 200 (325)
T ss_pred C
Confidence 7
No 470
>PRK10263 DNA translocase FtsK; Provisional
Probab=61.78 E-value=62 Score=40.33 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCC-CCCCEEEEECcc
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQM-SPGPFLVLCPLS 96 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~-~~~~~LIV~P~s 96 (673)
.+.+++..+|+|||...-++|..+..... ..-.+++|=|+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 57899999999999998888876654332 223356666774
No 471
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=61.66 E-value=23 Score=36.55 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCeEEECCCcchHHHHHHHHHH
Q 005858 47 WLIRRYLLGVNVLLGDEMGLGKTLQAISFLS 77 (673)
Q Consensus 47 ~l~~~~~~~~~~iLade~GlGKTl~ai~~i~ 77 (673)
|+..-...|.-+++...-|+|||-++..++.
T Consensus 86 ~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~ 116 (297)
T COG2842 86 RTRPASKTGSLVVVYGYAGLGKTQAAKNYAP 116 (297)
T ss_pred hhhhhhhcCceEEEeccccchhHHHHHhhcc
Confidence 4433334456678888999999998876653
No 472
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.29 E-value=13 Score=41.03 Aligned_cols=42 Identities=31% Similarity=0.398 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCCC-eEEECCCcchHHHHHHHHHHHhh
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVN-VLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~-~iLade~GlGKTl~ai~~i~~l~ 80 (673)
-+.++|...+..++.. ..| .++..++|+|||.+..+++.++.
T Consensus 241 g~~~~~~~~~~~~~~~---p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 241 GMSPFQLARLLRLLNR---PQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred CCCHHHHHHHHHHHhC---CCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3467777776655554 444 45677999999999999998885
No 473
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=61.08 E-value=25 Score=37.84 Aligned_cols=25 Identities=36% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..|.+|..+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999998888765
No 474
>PHA00012 I assembly protein
Probab=60.84 E-value=25 Score=36.97 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.8
Q ss_pred EEECCCcchHHHHHHHHHHHhh
Q 005858 59 LLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~ 80 (673)
++.--+|.|||+.+++-+....
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHH
Confidence 4566799999999997665544
No 475
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=60.80 E-value=49 Score=31.47 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=25.2
Q ss_pred ccccCCCccEEEEcCCccccCcc----cHHHHHHHhhcCCCcEEEEecCCCC
Q 005858 164 GFLSQIPWCYTIIDEAQRLKNPS----SVLYNVLREHFLMPRRLLMTGTPIQ 211 (673)
Q Consensus 164 ~~l~~~~~~~vIvDEaH~~KN~~----s~~~~~l~~~~~~~~rllLTGTPi~ 211 (673)
..+..-.||+||+||.-..-+.. ..+...+.. -+..--++|||--.+
T Consensus 90 ~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~-rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 90 EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLEN-RPESLEVVLTGRNAP 140 (172)
T ss_dssp HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHT-S-TT-EEEEE-SS--
T ss_pred HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHc-CCCCeEEEEECCCCC
Confidence 34456689999999987654422 233344442 344557999997553
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=59.96 E-value=2.5e+02 Score=30.29 Aligned_cols=57 Identities=19% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHHHhcC--CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 35 AELKPHQVEGLSWLIRRYLL--GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~--~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
..-|.+|...+.-++..-.. ....+|....|+|||.+.-.++..+ ..|..++++...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ec 66 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVEC 66 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHh
Confidence 44688999887666543211 1223788899999999998888665 457889988754
No 477
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=59.63 E-value=21 Score=45.01 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..+...+.....+||||=+....++
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHH
Confidence 5678999885 2367888999999999999988777665555334558888876554433
No 478
>PRK10646 ADP-binding protein; Provisional
Probab=59.62 E-value=25 Score=32.79 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=21.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
+.-.+|.-++|+|||.-+=+++..+-.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 334568889999999999998888743
No 479
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=59.20 E-value=22 Score=32.41 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC
Q 005858 331 LVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 331 l~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
...+..++.+....|.|++|+|.-...++.|.+.|-..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 47889999999999999999999999999999999654
No 480
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=58.98 E-value=16 Score=35.59 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..+.+++-.+|+|||....+++..+.........-++++-
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD 77 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIID 77 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEc
Confidence 3589999999999999999888888654323333344444
No 481
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=58.44 E-value=32 Score=36.82 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHHHHhc----CCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 37 LKPHQVEGLSWLIRRYL----LGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~----~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
+.+-..+-|.|+..... .+.-.+|+-++|+|||..+-+++..+..
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34445566667665443 1234589999999999999998887754
No 482
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=58.39 E-value=15 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 46 SWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 46 ~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.++......+.+.+++-.+|+|||..+-+++..+
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 3455555668899999999999999998887665
No 483
>PRK10436 hypothetical protein; Provisional
Probab=58.23 E-value=17 Score=40.43 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+.|.+.+..++.. .++-.+++-+||+|||.+..+++.++
T Consensus 200 LG~~~~~~~~l~~~~~~--~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ--PQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCcCHHHHHHHHHHHHh--cCCeEEEECCCCCChHHHHHHHHHhh
Confidence 34667777777766654 23446789999999999998888776
No 484
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=57.68 E-value=14 Score=32.95 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 48 LIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 48 l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.+....+.-.+|--++|+|||.-+=+++..+-
T Consensus 8 l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 8 LAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 334444444456778999999999888888773
No 485
>PRK04328 hypothetical protein; Provisional
Probab=57.58 E-value=27 Score=35.31 Aligned_cols=51 Identities=22% Similarity=0.106 Sum_probs=33.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
|...++..++|+|||..++.++..-... ..+.++|.-.....+..+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEeeCCHHHHHHHHHHc
Confidence 4456789999999999999888764322 34567776544444444444443
No 486
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=57.55 E-value=27 Score=37.87 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEec-CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQ-MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq-~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
+.-|.++...+-.+...|+++|+... |-.+..++...+...|+.+..++.....+....+.. +
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----~------------ 148 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----P------------ 148 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc----c------------
Confidence 55567777777777788999988877 778889999999999999998888766544433322 0
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhcc
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRI 453 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 453 (673)
-..+|++++|-||....+=+.++-|+
T Consensus 149 ---------------------~tk~v~lEtPsNP~l~v~DI~~i~~~ 174 (396)
T COG0626 149 ---------------------NTKLVFLETPSNPLLEVPDIPAIARL 174 (396)
T ss_pred ---------------------CceEEEEeCCCCcccccccHHHHHHH
Confidence 11378888888887666555554444
No 487
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=57.39 E-value=9 Score=40.96 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=34.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
..+.+|.-+.|+|||+++-+++..+- -++++|-...+.+.|.-|-+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsE 193 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPG 193 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHH
Confidence 34677888999999999999998772 34677766777777755443
No 488
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=57.23 E-value=53 Score=39.28 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
...+|.-++|+|||..+-+++..+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999888776
No 489
>CHL00195 ycf46 Ycf46; Provisional
Probab=57.13 E-value=11 Score=42.34 Aligned_cols=36 Identities=28% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
.+|.+|..++|+|||+.+=+++..+ ..|++.+-+..
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~ 294 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGK 294 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHH
Confidence 4678999999999999998888765 35666665543
No 490
>PRK14701 reverse gyrase; Provisional
Probab=56.76 E-value=85 Score=40.72 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh---
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL--- 367 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~--- 367 (673)
.++.|+..+..++... +.......++||..+..-+...+...|.++||.+.....+..+.+.|..
T Consensus 80 pt~iQ~~~i~~il~G~------------d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~ 147 (1638)
T PRK14701 80 FWSIQKTWAKRILRGK------------SFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCE 147 (1638)
T ss_pred CCHHHHHHHHHHHcCC------------CEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHh
Confidence 6778888887766531 1223345689998854433333334677999999988776666555543
Q ss_pred ---CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccc
Q 005858 368 ---RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRA 418 (673)
Q Consensus 368 ---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~a 418 (673)
.++.+..++|+++.+++...++.+. .++..+++.++.-
T Consensus 148 ~~~~~v~v~~~~g~~s~~e~~~~~~~l~-------------~g~~dILV~TPgr 188 (1638)
T PRK14701 148 KANLDVRLVYYHSNLRKKEKEEFLERIE-------------NGDFDILVTTAQF 188 (1638)
T ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHHh-------------cCCCCEEEECCch
Confidence 2456788999999988888888776 3445566666543
No 491
>PF05729 NACHT: NACHT domain
Probab=56.66 E-value=17 Score=33.48 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=23.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSP 86 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~ 86 (673)
.+|..+.|.|||..+..++..+.......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~ 31 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPP 31 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccc
Confidence 46788999999999999998886555433
No 492
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=56.40 E-value=15 Score=37.18 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
..+++...++|+|||++|=+++... .-|+|.|--..++.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~liG 189 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATELIG 189 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhccc------CCceEEechHHHHH
Confidence 3688999999999999998887655 35766665455553
No 493
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=55.53 E-value=27 Score=36.25 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=59.3
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-cc-----HHHHHHHHHHHC----CCCeEEEEeCChHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SV-----TDGWVSEMAKFT----PKLEVLRYVGEREQRRNI 127 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sl-----l~~W~~E~~k~~----p~~~v~~~~g~~~~~~~~ 127 (673)
+++..++|+||+--.=.++..- ...+.+..+..|+|. .. ...|.-++.+=- |+-.++.
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~-lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P----------- 157 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQ-LIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVP----------- 157 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcC-cccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecc-----------
Confidence 6889999999996544444332 344556678899995 33 366888775421 2111211
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc-----------ccCCCccEEEEcCCcc
Q 005858 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF-----------LSQIPWCYTIIDEAQR 181 (673)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~-----------l~~~~~~~vIvDEaH~ 181 (673)
......++.+-+||+.+..+... -...+.-.||+|||=.
T Consensus 158 ---------------~t~t~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe 207 (369)
T PF02456_consen 158 ---------------QTGTFRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECME 207 (369)
T ss_pred ---------------ccccccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHH
Confidence 11233467888888888654221 2334677999999865
No 494
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.40 E-value=1.2e+02 Score=33.88 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=71.4
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
..+.+.|.+.+..++... +-......++||-.. -++..+. .+..+||.+.....+......|...
T Consensus 10 ~~~r~~Q~~ai~~~l~g~------------dvlv~apTGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGR------------DCFVVMPTGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred CCCCHHHHHHHHHHHcCC------------CEEEEcCCCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHc
Confidence 446778888887766431 112223457888643 2333333 3557899999887766666677788
Q ss_pred CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc
Q 005858 369 KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG 420 (673)
Q Consensus 369 g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg 420 (673)
|++...+.|..+..++..++.... .+...++++++....
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~-------------~~~~~il~~TPe~l~ 113 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLK-------------DGKIKLLYVTPEKCS 113 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHh-------------cCCCCEEEECHHHHc
Confidence 999999999999888888887775 355678888776543
No 495
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=24 Score=39.94 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
..|.+|+.++|+|||+.|=+++.+-. --|+=|--..++..|.-|-++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag------~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG------ANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc------CceEeecCHHHHHHHhhhHHH
Confidence 46889999999999999999887652 235666556777877766544
No 496
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.95 E-value=22 Score=39.29 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=28.7
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
.+.+.+|.-++|+|||..+=+++..+ ..+++-|....++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~~ 255 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELIQ 255 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhhh
Confidence 34578999999999999998888765 23555555444443
No 497
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=54.92 E-value=34 Score=36.36 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=18.1
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
..||-.++|+|||..|=.++..-
T Consensus 164 SmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc
Confidence 57899999999998776666543
No 498
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=54.69 E-value=18 Score=36.23 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=30.9
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
+..|.-.+|+..+|+|||..++.++....... ..++++++.-.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~ 52 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEM 52 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 33445578999999999999998887665432 35678887543
No 499
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=54.34 E-value=12 Score=33.81 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=16.6
Q ss_pred eEEECCCcchHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l 79 (673)
++|-+.+|+|||..+-+++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6888999999999999888766
No 500
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=54.26 E-value=26 Score=40.51 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
-|.+++..+......+.++++.-++|+|||..+-+++..+.
T Consensus 22 G~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 22 GQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556666655555678999999999999999988887663
Done!