Query 005858
Match_columns 673
No_of_seqs 353 out of 2430
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.8E-76 1.3E-80 693.7 35.7 465 29-522 229-741 (800)
2 1z3i_X Similar to RAD54-like; 100.0 5.1E-72 1.7E-76 643.1 39.6 456 30-515 49-569 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 6.5E-67 2.2E-71 586.1 36.7 436 30-515 31-494 (500)
4 3dmq_A RNA polymerase-associat 100.0 4.9E-49 1.7E-53 469.9 32.9 423 32-491 149-638 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.2E-45 7.6E-50 407.4 28.7 408 34-486 7-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 5.4E-40 1.9E-44 364.9 18.2 347 33-485 90-471 (472)
7 4a2p_A RIG-I, retinoic acid in 100.0 8.9E-37 3.1E-41 345.5 32.5 411 34-490 5-529 (556)
8 3tbk_A RIG-I helicase domain; 100.0 2.4E-36 8.3E-41 341.6 30.7 413 35-489 3-527 (555)
9 4a2q_A RIG-I, retinoic acid in 100.0 4E-36 1.4E-40 354.1 29.6 415 34-490 246-770 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 6.9E-36 2.4E-40 356.1 28.5 415 34-490 246-770 (936)
11 1z5z_A Helicase of the SNF2/RA 100.0 4E-36 1.4E-40 307.7 18.4 223 269-512 13-263 (271)
12 4gl2_A Interferon-induced heli 100.0 5E-34 1.7E-38 332.3 23.6 414 34-489 5-540 (699)
13 2oca_A DAR protein, ATP-depend 100.0 4.1E-33 1.4E-37 312.6 26.8 344 34-474 111-464 (510)
14 2ykg_A Probable ATP-dependent 100.0 7.6E-33 2.6E-37 322.2 29.4 398 35-473 12-521 (696)
15 3h1t_A Type I site-specific re 100.0 5E-33 1.7E-37 317.4 19.5 350 32-465 174-558 (590)
16 1xti_A Probable ATP-dependent 100.0 2E-31 6.8E-36 288.0 26.9 330 36-480 30-368 (391)
17 1hv8_A Putative ATP-dependent 100.0 9.1E-31 3.1E-35 279.8 26.7 311 36-468 28-345 (367)
18 1s2m_A Putative ATP-dependent 100.0 4.5E-30 1.5E-34 278.5 29.5 316 36-468 43-365 (400)
19 2j0s_A ATP-dependent RNA helic 100.0 3E-30 1E-34 280.9 26.7 318 36-468 59-383 (410)
20 2z0m_A 337AA long hypothetical 100.0 7.2E-30 2.4E-34 269.7 23.3 313 35-479 15-335 (337)
21 3eiq_A Eukaryotic initiation f 100.0 1.1E-29 3.6E-34 276.6 24.3 320 35-468 61-387 (414)
22 1fuu_A Yeast initiation factor 100.0 4.1E-30 1.4E-34 277.8 17.0 317 35-468 42-366 (394)
23 3pey_A ATP-dependent RNA helic 100.0 8.2E-29 2.8E-33 267.4 26.2 313 35-462 26-352 (395)
24 2db3_A ATP-dependent RNA helic 100.0 2E-28 6.7E-33 268.8 26.1 312 36-462 78-403 (434)
25 2i4i_A ATP-dependent RNA helic 100.0 2.7E-28 9.3E-33 265.8 24.8 318 35-467 36-382 (417)
26 3fht_A ATP-dependent RNA helic 100.0 1.1E-27 3.7E-32 260.4 29.3 330 35-481 46-391 (412)
27 3oiy_A Reverse gyrase helicase 100.0 1.9E-27 6.4E-32 259.4 27.9 320 35-483 20-376 (414)
28 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-27 6.3E-32 266.5 24.8 306 35-461 24-338 (523)
29 3sqw_A ATP-dependent RNA helic 99.9 5.1E-26 1.7E-30 258.8 28.0 337 36-480 43-408 (579)
30 2eyq_A TRCF, transcription-rep 99.9 4.8E-26 1.7E-30 275.2 28.9 315 32-467 599-921 (1151)
31 2v1x_A ATP-dependent DNA helic 99.9 2.2E-26 7.7E-31 260.5 23.9 312 35-462 43-370 (591)
32 3i5x_A ATP-dependent RNA helic 99.9 2.1E-25 7.2E-30 253.0 28.0 338 35-480 93-459 (563)
33 3fho_A ATP-dependent RNA helic 99.9 6.8E-27 2.3E-31 261.6 13.0 314 36-462 141-466 (508)
34 3fmp_B ATP-dependent RNA helic 99.9 2.5E-26 8.4E-31 255.4 14.5 310 36-459 114-439 (479)
35 3hgt_A HDA1 complex subunit 3; 99.9 4.8E-26 1.6E-30 233.1 15.4 171 290-479 31-248 (328)
36 1gm5_A RECG; helicase, replica 99.9 2.3E-25 7.8E-30 257.8 18.7 313 32-462 364-693 (780)
37 2xgj_A ATP-dependent RNA helic 99.9 1.9E-24 6.5E-29 257.7 24.7 360 32-469 82-500 (1010)
38 3l9o_A ATP-dependent RNA helic 99.9 5.6E-23 1.9E-27 247.1 28.0 368 32-478 180-607 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.9 1E-22 3.5E-27 237.3 23.7 327 36-469 30-409 (715)
40 4a4z_A Antiviral helicase SKI2 99.9 4.6E-22 1.6E-26 237.2 29.4 382 32-478 35-502 (997)
41 2zj8_A DNA helicase, putative 99.9 5E-23 1.7E-27 240.0 20.4 321 36-472 23-391 (720)
42 2p6r_A Afuhel308 helicase; pro 99.9 1.7E-22 5.8E-27 234.9 24.2 321 36-471 25-391 (702)
43 4ddu_A Reverse gyrase; topoiso 99.9 1.9E-21 6.4E-26 233.8 28.3 322 34-485 76-505 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.8E-22 9.6E-27 237.8 20.3 349 34-466 269-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 3.4E-20 1.2E-24 222.9 21.6 318 34-484 55-468 (1054)
46 1rif_A DAR protein, DNA helica 99.8 4.8E-19 1.6E-23 182.6 14.0 164 35-226 112-278 (282)
47 2v6i_A RNA helicase; membrane, 99.8 4.6E-19 1.6E-23 193.7 13.5 101 343-462 169-287 (431)
48 1tf5_A Preprotein translocase 99.8 4.6E-17 1.6E-21 185.4 27.3 114 328-457 415-536 (844)
49 1yks_A Genome polyprotein [con 99.8 2.8E-18 9.7E-23 187.9 14.6 94 343-455 175-287 (440)
50 2wv9_A Flavivirin protease NS2 99.8 2.1E-18 7.3E-23 197.1 13.4 123 343-485 408-551 (673)
51 2fz4_A DNA repair protein RAD2 99.8 1.2E-17 4.1E-22 167.5 16.6 146 30-215 87-234 (237)
52 2jlq_A Serine protease subunit 99.7 2.1E-18 7.1E-23 189.7 11.2 95 344-457 187-301 (451)
53 2z83_A Helicase/nucleoside tri 99.7 5.9E-18 2E-22 186.5 12.6 105 344-468 189-313 (459)
54 1nkt_A Preprotein translocase 99.7 3.6E-16 1.2E-20 177.8 26.9 114 327-456 442-607 (922)
55 2xau_A PRE-mRNA-splicing facto 99.7 2.8E-17 9.6E-22 191.3 18.4 314 38-469 95-444 (773)
56 2fsf_A Preprotein translocase 99.7 2.6E-16 9E-21 178.7 25.4 115 327-457 423-574 (853)
57 2hjv_A ATP-dependent RNA helic 99.7 1.2E-17 4E-22 157.6 12.1 134 327-480 19-152 (163)
58 1t5i_A C_terminal domain of A 99.7 2E-17 6.7E-22 157.5 12.9 119 327-461 15-133 (172)
59 2whx_A Serine protease/ntpase/ 99.7 3E-17 1E-21 186.4 16.3 287 50-483 181-494 (618)
60 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.3E-17 4.4E-22 160.7 10.2 125 327-468 29-153 (185)
61 2d7d_A Uvrabc system protein B 99.7 3.2E-15 1.1E-19 171.3 31.5 123 330-469 430-557 (661)
62 4f92_B U5 small nuclear ribonu 99.7 5.5E-16 1.9E-20 193.0 26.9 321 36-468 926-1308(1724)
63 3rc3_A ATP-dependent RNA helic 99.7 5.9E-17 2E-21 184.8 16.7 108 347-467 322-444 (677)
64 3o8b_A HCV NS3 protease/helica 99.7 4.8E-17 1.7E-21 183.5 13.1 261 54-470 231-516 (666)
65 1fuk_A Eukaryotic initiation f 99.7 8.1E-17 2.8E-21 152.1 11.7 123 329-469 16-138 (165)
66 4f92_B U5 small nuclear ribonu 99.7 1.6E-15 5.3E-20 189.0 25.8 325 36-471 79-476 (1724)
67 2p6n_A ATP-dependent RNA helic 99.7 1E-16 3.5E-21 155.1 11.4 123 327-468 39-161 (191)
68 3jux_A Protein translocase sub 99.7 3E-15 1E-19 166.8 24.2 116 327-458 456-579 (822)
69 1c4o_A DNA nucleotide excision 99.7 2.7E-14 9.3E-19 163.7 31.8 125 328-469 422-551 (664)
70 1t6n_A Probable ATP-dependent 99.7 7.3E-16 2.5E-20 152.5 16.0 157 36-211 36-202 (220)
71 2gxq_A Heat resistant RNA depe 99.7 9.1E-16 3.1E-20 150.1 15.7 157 35-210 22-186 (207)
72 2rb4_A ATP-dependent RNA helic 99.7 4.6E-16 1.6E-20 148.4 12.8 123 329-469 20-148 (175)
73 3eaq_A Heat resistant RNA depe 99.6 8.8E-16 3E-20 151.2 14.1 136 324-479 12-147 (212)
74 2yjt_D ATP-dependent RNA helic 99.4 1.5E-17 5.1E-22 158.0 0.0 118 328-461 15-132 (170)
75 3b6e_A Interferon-induced heli 99.6 8.8E-16 3E-20 151.0 12.7 158 32-208 29-216 (216)
76 1q0u_A Bstdead; DEAD protein, 99.6 2.9E-15 1E-19 148.1 15.4 161 35-216 25-197 (219)
77 1vec_A ATP-dependent RNA helic 99.6 7E-15 2.4E-19 143.7 17.0 155 36-210 25-188 (206)
78 2oxc_A Probable ATP-dependent 99.6 1.1E-14 3.7E-19 145.2 16.9 153 36-209 46-208 (230)
79 3bor_A Human initiation factor 99.6 1.1E-14 3.8E-19 145.9 15.5 157 36-210 52-215 (237)
80 1qde_A EIF4A, translation init 99.6 1.6E-14 5.6E-19 143.1 16.5 155 35-210 35-197 (224)
81 2pl3_A Probable ATP-dependent 99.6 1.3E-14 4.4E-19 145.1 15.5 155 35-210 46-213 (236)
82 3ber_A Probable ATP-dependent 99.6 8.8E-15 3E-19 147.7 14.4 155 36-210 65-228 (249)
83 3i32_A Heat resistant RNA depe 99.6 1.3E-14 4.5E-19 149.9 14.1 127 324-468 9-135 (300)
84 1wrb_A DJVLGB; RNA helicase, D 99.5 5.4E-14 1.8E-18 142.2 15.2 157 35-210 44-220 (253)
85 3iuy_A Probable ATP-dependent 99.5 1.9E-13 6.4E-18 135.9 15.1 156 35-209 41-208 (228)
86 3dkp_A Probable ATP-dependent 99.5 1.9E-13 6.6E-18 137.3 12.5 156 36-209 51-220 (245)
87 3fe2_A Probable ATP-dependent 99.4 9.9E-13 3.4E-17 132.0 16.0 154 36-209 51-217 (242)
88 3ly5_A ATP-dependent RNA helic 99.4 6.9E-13 2.4E-17 134.8 14.4 155 36-210 76-243 (262)
89 2ipc_A Preprotein translocase 99.4 3E-11 1E-15 137.3 22.9 146 35-221 78-239 (997)
90 2vl7_A XPD; helicase, unknown 99.3 1.7E-10 5.9E-15 129.3 25.4 69 34-108 5-74 (540)
91 3fmo_B ATP-dependent RNA helic 99.3 1.9E-11 6.6E-16 126.6 14.8 155 36-210 114-278 (300)
92 3llm_A ATP-dependent RNA helic 98.8 2.2E-08 7.6E-13 99.6 11.2 151 35-210 60-219 (235)
93 3crv_A XPD/RAD3 related DNA he 98.7 2.8E-08 9.6E-13 111.7 11.6 144 35-184 2-187 (551)
94 4a15_A XPD helicase, ATP-depen 98.2 1.7E-06 5.8E-11 98.2 6.9 83 35-119 2-87 (620)
95 4b3f_X DNA-binding protein smu 97.9 0.0002 6.9E-09 81.7 16.6 71 33-109 186-257 (646)
96 3upu_A ATP-dependent DNA helic 97.7 0.0003 1E-08 76.9 15.0 143 35-212 24-167 (459)
97 2gk6_A Regulator of nonsense t 97.7 0.00053 1.8E-08 77.9 15.8 161 35-212 179-376 (624)
98 3e1s_A Exodeoxyribonuclease V, 97.7 0.00061 2.1E-08 76.3 16.1 132 34-212 187-318 (574)
99 2wjy_A Regulator of nonsense t 97.5 0.00098 3.3E-08 77.5 15.5 161 35-212 355-552 (800)
100 2xzl_A ATP-dependent helicase 97.5 0.00085 2.9E-08 78.1 14.7 160 35-212 359-554 (802)
101 3lfu_A DNA helicase II; SF1 he 97.1 0.0095 3.2E-07 67.8 18.2 68 35-108 8-77 (647)
102 1w36_D RECD, exodeoxyribonucle 97.0 0.0042 1.4E-07 70.2 13.0 150 38-215 151-304 (608)
103 2o0j_A Terminase, DNA packagin 96.4 0.042 1.5E-06 57.9 14.7 158 33-223 160-325 (385)
104 3vkw_A Replicase large subunit 96.1 0.016 5.6E-07 62.0 9.8 108 58-212 164-272 (446)
105 3cpe_A Terminase, DNA packagin 96.1 0.06 2E-06 60.5 14.7 157 33-221 160-323 (592)
106 2orw_A Thymidine kinase; TMTK, 96.1 0.018 6.1E-07 54.3 8.8 36 57-95 5-40 (184)
107 2j9r_A Thymidine kinase; TK1, 95.3 0.069 2.4E-06 51.3 9.7 35 59-96 32-66 (214)
108 1l8q_A Chromosomal replication 95.2 0.088 3E-06 54.1 11.0 44 55-101 37-80 (324)
109 2b8t_A Thymidine kinase; deoxy 95.2 0.028 9.5E-07 54.7 6.6 39 55-96 12-50 (223)
110 1xx6_A Thymidine kinase; NESG, 95.1 0.058 2E-06 51.1 8.5 35 58-95 11-45 (191)
111 1a5t_A Delta prime, HOLB; zinc 95.0 0.13 4.5E-06 53.2 11.7 45 37-81 3-50 (334)
112 4a15_A XPD helicase, ATP-depen 94.5 0.099 3.4E-06 59.0 9.6 103 343-462 446-580 (620)
113 3syl_A Protein CBBX; photosynt 94.3 0.068 2.3E-06 54.4 7.3 41 56-96 68-109 (309)
114 2orv_A Thymidine kinase; TP4A 94.1 0.094 3.2E-06 50.9 7.3 35 58-95 22-56 (234)
115 4b4t_J 26S protease regulatory 94.1 0.18 6.3E-06 53.2 10.1 46 54-105 181-226 (405)
116 3ec2_A DNA replication protein 93.8 0.69 2.3E-05 42.7 12.6 43 38-80 16-63 (180)
117 1w4r_A Thymidine kinase; type 93.5 0.18 6.2E-06 47.6 7.8 35 58-95 23-57 (195)
118 3u61_B DNA polymerase accessor 93.4 0.25 8.6E-06 50.5 9.6 41 170-211 105-147 (324)
119 3bos_A Putative DNA replicatio 92.5 0.16 5.3E-06 49.2 6.0 40 42-81 37-78 (242)
120 2gno_A DNA polymerase III, gam 92.3 0.88 3E-05 46.3 11.6 38 41-78 2-41 (305)
121 2z4s_A Chromosomal replication 92.3 0.9 3.1E-05 48.8 12.3 39 55-94 130-168 (440)
122 3h4m_A Proteasome-activating n 92.3 0.24 8.1E-06 49.6 7.3 55 37-97 21-87 (285)
123 3eie_A Vacuolar protein sortin 92.2 0.25 8.4E-06 50.7 7.5 40 56-101 52-91 (322)
124 2chg_A Replication factor C sm 92.2 0.86 2.9E-05 42.9 10.9 42 38-80 22-63 (226)
125 1njg_A DNA polymerase III subu 92.2 0.45 1.5E-05 45.5 9.0 43 38-80 28-70 (250)
126 2p65_A Hypothetical protein PF 92.0 0.28 9.4E-06 45.1 6.9 26 55-80 43-68 (187)
127 3te6_A Regulatory protein SIR3 91.9 1.6 5.6E-05 44.5 13.1 44 38-81 25-71 (318)
128 3vfd_A Spastin; ATPase, microt 91.8 0.38 1.3E-05 50.7 8.6 41 55-101 148-188 (389)
129 3e2i_A Thymidine kinase; Zn-bi 91.3 0.9 3.1E-05 43.5 9.6 36 58-96 31-66 (219)
130 2qby_B CDC6 homolog 3, cell di 91.3 0.85 2.9E-05 47.5 10.6 45 37-81 24-71 (384)
131 2qp9_X Vacuolar protein sortin 91.0 0.28 9.5E-06 51.2 6.4 35 55-95 84-118 (355)
132 1sxj_D Activator 1 41 kDa subu 91.0 0.45 1.5E-05 49.0 8.0 36 45-80 46-83 (353)
133 1xwi_A SKD1 protein; VPS4B, AA 90.9 0.24 8.3E-06 50.9 5.7 38 56-98 46-83 (322)
134 2qz4_A Paraplegin; AAA+, SPG7, 90.8 1 3.4E-05 44.1 10.0 37 55-97 39-75 (262)
135 3uk6_A RUVB-like 2; hexameric 90.7 0.85 2.9E-05 47.3 9.9 53 38-94 49-105 (368)
136 1jr3_A DNA polymerase III subu 90.6 1.3 4.4E-05 45.9 11.1 43 38-80 21-63 (373)
137 1fnn_A CDC6P, cell division co 90.5 2.1 7.3E-05 44.4 12.8 43 38-80 22-69 (389)
138 2v1u_A Cell division control p 89.8 0.94 3.2E-05 47.0 9.3 44 38-81 24-70 (387)
139 1gm5_A RECG; helicase, replica 89.5 2 7E-05 49.5 12.4 129 290-437 368-500 (780)
140 2zan_A Vacuolar protein sortin 89.3 0.42 1.4E-05 51.5 6.2 42 55-101 167-208 (444)
141 2bjv_A PSP operon transcriptio 89.3 1.2 4E-05 44.0 9.0 38 52-92 26-63 (265)
142 3t15_A Ribulose bisphosphate c 89.1 0.62 2.1E-05 47.0 6.9 37 56-98 37-73 (293)
143 1iqp_A RFCS; clamp loader, ext 89.0 0.82 2.8E-05 46.3 7.9 42 38-80 30-71 (327)
144 3hu3_A Transitional endoplasmi 88.0 0.79 2.7E-05 49.9 7.3 34 54-93 237-270 (489)
145 1uaa_A REP helicase, protein ( 88.0 0.75 2.6E-05 52.3 7.4 68 36-109 2-71 (673)
146 3hjh_A Transcription-repair-co 87.4 2.9 9.9E-05 45.3 11.2 56 56-118 15-71 (483)
147 3d8b_A Fidgetin-like protein 1 87.3 0.84 2.9E-05 47.5 6.7 38 55-98 117-154 (357)
148 3crv_A XPD/RAD3 related DNA he 86.9 4.3 0.00015 44.8 12.6 77 343-439 391-474 (551)
149 1sxj_B Activator 1 37 kDa subu 86.9 1.4 4.8E-05 44.5 8.1 24 57-80 44-67 (323)
150 2qby_A CDC6 homolog 1, cell di 85.3 1.6 5.5E-05 45.1 7.7 45 38-82 25-72 (386)
151 1d2n_A N-ethylmaleimide-sensit 85.1 2.3 7.8E-05 42.0 8.4 24 56-79 65-88 (272)
152 3oiy_A Reverse gyrase helicase 83.8 5 0.00017 42.1 10.9 119 291-434 22-146 (414)
153 1sxj_A Activator 1 95 kDa subu 83.7 4.1 0.00014 44.6 10.3 24 56-79 78-101 (516)
154 4b4t_L 26S protease subunit RP 83.6 0.91 3.1E-05 48.5 4.9 44 55-104 215-258 (437)
155 2w58_A DNAI, primosome compone 83.6 2.1 7.1E-05 40.1 7.0 34 56-92 55-88 (202)
156 4b4t_M 26S protease regulatory 82.6 0.57 2E-05 50.1 2.8 42 55-102 215-256 (434)
157 2kjq_A DNAA-related protein; s 81.8 2.4 8.2E-05 37.9 6.3 27 54-80 35-61 (149)
158 3pvs_A Replication-associated 81.5 2.5 8.4E-05 45.4 7.3 24 56-79 51-74 (447)
159 3kl4_A SRP54, signal recogniti 81.2 5.8 0.0002 42.2 10.0 33 58-93 100-132 (433)
160 3b9p_A CG5977-PA, isoform A; A 81.1 2.7 9.1E-05 42.0 7.1 25 55-79 54-78 (297)
161 3dm5_A SRP54, signal recogniti 80.6 1.9 6.6E-05 46.0 6.0 33 58-93 103-135 (443)
162 1pjr_A PCRA; DNA repair, DNA r 80.3 2.5 8.4E-05 48.5 7.2 68 35-108 10-79 (724)
163 4b4t_I 26S protease regulatory 80.2 0.79 2.7E-05 48.7 2.8 44 55-104 216-259 (437)
164 4b4t_K 26S protease regulatory 79.3 0.86 3E-05 48.6 2.7 41 55-101 206-246 (428)
165 2ce7_A Cell division protein F 79.2 9.7 0.00033 41.0 11.1 36 55-96 49-84 (476)
166 2cvh_A DNA repair and recombin 79.0 7 0.00024 36.7 9.0 54 44-103 8-64 (220)
167 1sxj_E Activator 1 40 kDa subu 78.9 6.2 0.00021 40.4 9.2 39 41-79 19-60 (354)
168 1w5s_A Origin recognition comp 78.8 14 0.00046 38.5 12.1 43 38-80 27-77 (412)
169 1r6b_X CLPA protein; AAA+, N-t 78.4 6.2 0.00021 45.4 9.9 26 55-80 207-232 (758)
170 3co5_A Putative two-component 78.1 3 0.0001 36.7 5.7 50 53-109 25-74 (143)
171 4b4t_H 26S protease regulatory 78.0 0.89 3E-05 48.8 2.3 61 37-103 213-285 (467)
172 2eyq_A TRCF, transcription-rep 76.7 14 0.00049 44.5 12.7 125 291-434 604-732 (1151)
173 3n70_A Transport activator; si 75.5 4.2 0.00014 35.8 5.8 39 53-94 22-60 (145)
174 1wp9_A ATP-dependent RNA helic 74.9 12 0.00041 39.5 10.4 117 289-436 8-134 (494)
175 2zpa_A Uncharacterized protein 74.5 8.3 0.00028 43.3 9.1 53 35-95 174-226 (671)
176 2iut_A DNA translocase FTSK; n 74.3 8.2 0.00028 42.5 8.8 42 55-96 214-256 (574)
177 4ddu_A Reverse gyrase; topoiso 72.7 11 0.00038 45.2 10.2 121 290-435 78-204 (1104)
178 2qgz_A Helicase loader, putati 72.5 5.6 0.00019 40.2 6.6 35 55-92 152-187 (308)
179 3cf0_A Transitional endoplasmi 71.4 6.1 0.00021 39.7 6.6 41 54-100 48-88 (301)
180 1xp8_A RECA protein, recombina 71.2 7.6 0.00026 40.3 7.4 55 44-101 61-117 (366)
181 2zr9_A Protein RECA, recombina 70.7 7.8 0.00027 40.0 7.3 56 43-101 47-104 (349)
182 3u4q_A ATP-dependent helicase/ 70.6 5.4 0.00018 48.6 7.0 60 32-97 6-68 (1232)
183 1vma_A Cell division protein F 70.6 15 0.00053 36.9 9.4 33 58-93 107-139 (306)
184 3u4q_B ATP-dependent helicase/ 70.5 6 0.00021 47.9 7.4 51 60-110 6-56 (1166)
185 2c9o_A RUVB-like 1; hexameric 70.4 3.8 0.00013 44.0 5.0 59 37-99 41-103 (456)
186 1qvr_A CLPB protein; coiled co 70.0 11 0.00037 44.0 9.2 26 55-80 191-216 (854)
187 3cf2_A TER ATPase, transitiona 69.2 5.1 0.00017 46.2 5.9 41 55-101 238-278 (806)
188 2dhr_A FTSH; AAA+ protein, hex 67.6 44 0.0015 36.1 12.7 52 38-95 36-98 (499)
189 2fna_A Conserved hypothetical 65.6 34 0.0012 34.3 11.1 37 38-79 18-54 (357)
190 2r44_A Uncharacterized protein 65.5 4.4 0.00015 41.2 4.1 26 54-79 45-70 (331)
191 3bh0_A DNAB-like replicative h 65.3 11 0.00037 38.2 7.0 60 44-106 57-116 (315)
192 1tue_A Replication protein E1; 64.7 6.5 0.00022 37.3 4.7 23 57-79 60-82 (212)
193 2z43_A DNA repair and recombin 64.1 28 0.00094 35.2 9.9 44 54-97 106-152 (324)
194 1t6n_A Probable ATP-dependent 63.8 76 0.0026 29.3 12.5 86 291-388 37-130 (220)
195 1ofh_A ATP-dependent HSL prote 62.2 19 0.00065 35.6 8.1 25 55-79 50-74 (310)
196 3hr8_A Protein RECA; alpha and 61.9 23 0.00079 36.5 8.7 42 55-99 61-102 (356)
197 1lv7_A FTSH; alpha/beta domain 61.7 13 0.00044 36.0 6.6 36 55-96 45-80 (257)
198 1jbk_A CLPB protein; beta barr 61.7 8.2 0.00028 34.8 4.9 27 55-81 43-69 (195)
199 3pfi_A Holliday junction ATP-d 59.3 86 0.003 31.3 12.7 42 38-79 34-79 (338)
200 1u6t_A SH3 domain-binding glut 58.9 18 0.00062 31.0 6.1 45 348-392 2-53 (121)
201 2zts_A Putative uncharacterize 58.9 16 0.00054 34.8 6.6 51 55-107 30-80 (251)
202 4a1f_A DNAB helicase, replicat 58.9 16 0.00054 37.4 6.8 59 44-105 35-93 (338)
203 3hws_A ATP-dependent CLP prote 58.8 12 0.00042 38.4 6.1 36 54-95 50-85 (363)
204 1ls1_A Signal recognition part 58.7 39 0.0013 33.6 9.7 33 59-94 102-134 (295)
205 3ber_A Probable ATP-dependent 58.0 95 0.0032 29.6 12.2 115 290-433 65-192 (249)
206 2dr3_A UPF0273 protein PH0284; 57.9 16 0.00054 34.8 6.4 50 54-106 22-71 (247)
207 3ipz_A Monothiol glutaredoxin- 56.7 46 0.0016 27.5 8.3 55 334-389 7-67 (109)
208 3cmu_A Protein RECA, recombina 56.6 16 0.00054 46.4 7.3 43 53-98 1425-1467(2050)
209 3io5_A Recombination and repai 56.3 18 0.00063 36.7 6.6 42 57-99 30-71 (333)
210 2pl3_A Probable ATP-dependent 55.7 93 0.0032 29.1 11.6 83 290-384 47-140 (236)
211 3bgw_A DNAB-like replicative h 55.6 13 0.00044 39.7 5.7 59 44-105 186-244 (444)
212 3zyw_A Glutaredoxin-3; metal b 55.4 49 0.0017 27.4 8.3 53 335-388 6-64 (111)
213 2q6t_A DNAB replication FORK h 55.2 19 0.00066 38.2 7.1 60 44-105 189-248 (444)
214 1zu4_A FTSY; GTPase, signal re 54.4 52 0.0018 33.2 9.8 33 58-93 108-140 (320)
215 2r8r_A Sensor protein; KDPD, P 53.0 12 0.0004 36.0 4.3 43 57-102 8-52 (228)
216 1ojl_A Transcriptional regulat 52.8 16 0.00056 36.6 5.7 38 53-93 23-60 (304)
217 1gku_B Reverse gyrase, TOP-RG; 52.3 59 0.002 38.7 11.3 88 293-392 59-154 (1054)
218 4dzz_A Plasmid partitioning pr 51.9 1.4E+02 0.0047 27.0 12.5 38 62-102 9-48 (206)
219 2w0m_A SSO2452; RECA, SSPF, un 51.0 22 0.00077 33.2 6.2 42 52-96 20-61 (235)
220 3g5j_A Putative ATP/GTP bindin 50.6 25 0.00086 29.8 5.9 48 333-381 77-126 (134)
221 4fcw_A Chaperone protein CLPB; 50.5 17 0.00058 36.1 5.4 33 57-92 49-81 (311)
222 2r6a_A DNAB helicase, replicat 50.2 28 0.00096 37.0 7.4 58 45-104 193-250 (454)
223 3gx8_A Monothiol glutaredoxin- 50.0 71 0.0024 27.0 8.5 53 336-389 7-68 (121)
224 2i1q_A DNA repair and recombin 49.5 46 0.0016 33.3 8.6 36 44-79 86-122 (322)
225 1sxj_C Activator 1 40 kDa subu 49.4 15 0.00052 37.3 4.9 40 41-80 30-71 (340)
226 3cf2_A TER ATPase, transitiona 49.2 5.7 0.0002 45.7 1.7 41 55-101 511-551 (806)
227 1byi_A Dethiobiotin synthase; 47.6 18 0.00063 33.9 4.9 34 58-94 5-38 (224)
228 1qde_A EIF4A, translation init 47.5 64 0.0022 29.9 8.8 83 290-384 36-125 (224)
229 3nbx_X ATPase RAVA; AAA+ ATPas 46.6 7.5 0.00026 42.2 2.1 27 53-79 39-65 (500)
230 1u0j_A DNA replication protein 46.5 10 0.00034 37.5 2.8 23 57-79 106-128 (267)
231 3iuy_A Probable ATP-dependent 46.3 1.1E+02 0.0037 28.5 10.2 83 290-384 42-136 (228)
232 3of5_A Dethiobiotin synthetase 46.1 12 0.00042 35.8 3.3 27 58-84 8-34 (228)
233 3qxc_A Dethiobiotin synthetase 45.8 12 0.00043 36.2 3.3 26 58-83 25-50 (242)
234 1v5w_A DMC1, meiotic recombina 45.7 88 0.003 31.7 10.1 42 56-97 123-167 (343)
235 3ly5_A ATP-dependent RNA helic 45.3 1.6E+02 0.0056 28.1 11.6 84 290-385 76-170 (262)
236 2r62_A Cell division protease 45.3 21 0.00072 34.6 5.0 25 55-79 44-68 (268)
237 2oxc_A Probable ATP-dependent 45.1 50 0.0017 31.1 7.6 84 291-386 47-138 (230)
238 2yxb_A Coenzyme B12-dependent 45.1 60 0.0021 29.0 7.7 51 344-394 17-71 (161)
239 2yan_A Glutaredoxin-3; oxidore 44.8 91 0.0031 25.1 8.3 57 335-392 7-69 (105)
240 4a2p_A RIG-I, retinoic acid in 44.2 88 0.003 33.5 10.4 84 289-384 6-98 (556)
241 3fgn_A Dethiobiotin synthetase 42.8 15 0.0005 36.0 3.3 27 58-84 30-56 (251)
242 1qfq_B N36, 36-MER N-terminal 42.6 29 0.001 21.5 3.3 22 631-652 6-27 (35)
243 3k1j_A LON protease, ATP-depen 42.5 40 0.0014 37.4 7.3 37 43-79 48-84 (604)
244 1u94_A RECA protein, recombina 42.3 24 0.0008 36.4 5.0 50 44-96 50-101 (356)
245 1um8_A ATP-dependent CLP prote 42.3 24 0.00082 36.4 5.1 25 55-79 72-96 (376)
246 2v1x_A ATP-dependent DNA helic 41.5 84 0.0029 34.7 9.7 104 290-419 44-147 (591)
247 2oap_1 GSPE-2, type II secreti 41.2 20 0.00069 38.9 4.5 37 40-79 248-284 (511)
248 1q57_A DNA primase/helicase; d 41.0 31 0.0011 37.2 6.0 52 52-105 239-290 (503)
249 2ffh_A Protein (FFH); SRP54, s 40.8 47 0.0016 35.0 7.1 34 58-94 101-134 (425)
250 1xti_A Probable ATP-dependent 40.5 1.1E+02 0.0039 30.8 10.1 118 290-435 30-160 (391)
251 3iwh_A Rhodanese-like domain p 40.5 25 0.00086 28.9 4.0 38 343-380 54-91 (103)
252 2wem_A Glutaredoxin-related pr 40.5 84 0.0029 26.4 7.4 43 346-388 20-69 (118)
253 3a10_A Response regulator; pho 40.0 1.3E+02 0.0045 23.8 8.7 92 344-451 24-115 (116)
254 2lqo_A Putative glutaredoxin R 39.8 94 0.0032 24.8 7.3 46 346-391 4-50 (92)
255 2wul_A Glutaredoxin related pr 39.7 1.1E+02 0.0038 25.8 8.0 46 346-392 20-72 (118)
256 3cmu_A Protein RECA, recombina 39.4 34 0.0012 43.5 6.5 56 44-102 719-776 (2050)
257 3foj_A Uncharacterized protein 39.1 28 0.00097 28.1 4.1 38 343-380 54-91 (100)
258 3kjh_A CO dehydrogenase/acetyl 39.0 18 0.00062 34.4 3.4 29 61-92 6-34 (254)
259 3pxg_A Negative regulator of g 38.8 27 0.00093 37.4 5.0 27 54-80 200-226 (468)
260 1g3q_A MIND ATPase, cell divis 38.7 27 0.00094 32.9 4.6 33 59-94 7-39 (237)
261 3nhm_A Response regulator; pro 38.7 1.6E+02 0.0053 24.0 9.2 104 338-454 20-123 (133)
262 3gk5_A Uncharacterized rhodane 38.6 27 0.00093 28.8 3.9 38 343-380 53-90 (108)
263 2x8a_A Nuclear valosin-contain 38.5 19 0.00064 35.6 3.4 25 55-79 44-68 (274)
264 3eqz_A Response regulator; str 38.4 97 0.0033 25.4 7.7 76 370-456 47-128 (135)
265 3eme_A Rhodanese-like domain p 38.1 29 0.001 28.1 4.0 38 343-380 54-91 (103)
266 1wik_A Thioredoxin-like protei 37.6 1.2E+02 0.004 24.7 7.8 47 345-391 14-66 (109)
267 2r2a_A Uncharacterized protein 37.6 29 0.00098 32.4 4.3 23 57-79 7-29 (199)
268 1g41_A Heat shock protein HSLU 37.5 62 0.0021 34.3 7.4 25 55-79 50-74 (444)
269 1hqc_A RUVB; extended AAA-ATPa 37.4 32 0.0011 34.3 5.0 42 38-79 17-62 (324)
270 2wci_A Glutaredoxin-4; redox-a 37.1 1.1E+02 0.0036 26.5 7.7 57 334-391 24-86 (135)
271 1ixz_A ATP-dependent metallopr 37.0 40 0.0014 32.3 5.5 24 56-79 50-73 (254)
272 1hyq_A MIND, cell division inh 36.8 33 0.0011 33.0 4.9 33 58-93 6-38 (263)
273 3fe2_A Probable ATP-dependent 36.8 1.1E+02 0.0039 28.7 8.8 87 290-388 51-149 (242)
274 3q9l_A Septum site-determining 36.8 30 0.001 33.2 4.6 31 59-92 7-37 (260)
275 4a2q_A RIG-I, retinoic acid in 36.2 1.2E+02 0.0041 34.7 10.3 84 289-384 247-339 (797)
276 3lte_A Response regulator; str 36.1 59 0.002 26.8 5.9 20 434-453 106-125 (132)
277 2chq_A Replication factor C sm 36.0 29 0.00098 34.4 4.4 24 57-80 40-63 (319)
278 2ph1_A Nucleotide-binding prot 35.6 33 0.0011 33.2 4.7 32 59-93 23-54 (262)
279 2gxq_A Heat resistant RNA depe 35.5 1.4E+02 0.0048 26.9 9.0 83 290-384 23-113 (207)
280 3ug7_A Arsenical pump-driving 35.5 47 0.0016 33.9 6.0 33 58-93 29-61 (349)
281 1cp2_A CP2, nitrogenase iron p 35.1 24 0.00082 34.2 3.6 28 62-92 8-35 (269)
282 3cmw_A Protein RECA, recombina 35.0 54 0.0019 41.0 7.2 46 52-100 729-774 (1706)
283 2j37_W Signal recognition part 35.0 1.1E+02 0.0039 32.8 9.1 34 58-94 104-137 (504)
284 3hix_A ALR3790 protein; rhodan 34.7 43 0.0015 27.3 4.6 38 343-380 50-88 (106)
285 2z0m_A 337AA long hypothetical 34.6 3.1E+02 0.011 26.6 12.1 81 290-385 16-100 (337)
286 2jtq_A Phage shock protein E; 34.6 69 0.0024 24.7 5.6 44 336-380 31-76 (85)
287 3tbk_A RIG-I helicase domain; 34.4 1E+02 0.0035 32.9 8.9 82 290-383 4-94 (555)
288 2l82_A Designed protein OR32; 34.3 1.5E+02 0.0052 24.3 7.5 47 348-394 5-51 (162)
289 1wv9_A Rhodanese homolog TT165 34.3 36 0.0012 27.0 3.9 35 346-380 54-88 (94)
290 4ehx_A Tetraacyldisaccharide 4 34.1 1.2E+02 0.004 30.5 8.6 55 63-117 46-116 (315)
291 1iy2_A ATP-dependent metallopr 33.4 49 0.0017 32.2 5.6 43 37-79 44-97 (278)
292 1oyw_A RECQ helicase, ATP-depe 32.9 1.1E+02 0.0038 33.0 8.8 102 290-419 25-126 (523)
293 1fuu_A Yeast initiation factor 32.9 2.5E+02 0.0086 28.1 11.3 88 290-389 43-137 (394)
294 3fwy_A Light-independent proto 32.8 28 0.00097 35.1 3.7 30 60-92 53-82 (314)
295 4b3f_X DNA-binding protein smu 32.6 60 0.0021 36.2 6.7 74 290-376 189-264 (646)
296 3i42_A Response regulator rece 32.4 77 0.0026 25.9 6.0 101 343-456 25-125 (127)
297 4ag6_A VIRB4 ATPase, type IV s 32.4 61 0.0021 33.5 6.4 45 54-101 34-78 (392)
298 2db3_A ATP-dependent RNA helic 32.3 2.8E+02 0.0096 28.7 11.7 115 290-433 78-209 (434)
299 2afh_E Nitrogenase iron protei 32.3 29 0.001 34.1 3.7 29 61-92 8-36 (289)
300 1gmx_A GLPE protein; transfera 32.2 58 0.002 26.5 5.0 39 343-381 56-95 (108)
301 3end_A Light-independent proto 32.1 29 0.001 34.5 3.7 29 61-92 47-75 (307)
302 3zq6_A Putative arsenical pump 31.7 40 0.0014 34.0 4.6 34 58-94 17-50 (324)
303 3ea0_A ATPase, para family; al 31.6 44 0.0015 31.6 4.7 32 59-92 9-40 (245)
304 3b6e_A Interferon-induced heli 31.6 80 0.0027 28.8 6.5 82 288-381 31-122 (216)
305 2r2a_A Uncharacterized protein 31.4 33 0.0011 32.0 3.6 38 171-209 88-132 (199)
306 1s2m_A Putative ATP-dependent 31.1 3.2E+02 0.011 27.4 11.8 119 290-437 43-173 (400)
307 3grc_A Sensor protein, kinase; 30.9 1.9E+02 0.0066 23.8 8.5 99 343-454 28-128 (140)
308 1wrb_A DJVLGB; RNA helicase, D 30.9 3.3E+02 0.011 25.4 12.1 83 290-384 45-143 (253)
309 3cio_A ETK, tyrosine-protein k 30.8 47 0.0016 33.1 4.9 32 59-93 109-140 (299)
310 3trf_A Shikimate kinase, SK; a 30.7 32 0.0011 31.0 3.4 25 55-79 5-29 (185)
311 1in4_A RUVB, holliday junction 30.2 53 0.0018 33.2 5.3 41 39-79 31-75 (334)
312 2xxa_A Signal recognition part 30.1 49 0.0017 35.0 5.1 33 58-93 103-136 (433)
313 4akg_A Glutathione S-transfera 30.1 51 0.0018 43.2 6.1 61 37-97 905-965 (2695)
314 3vaa_A Shikimate kinase, SK; s 30.0 34 0.0012 31.5 3.5 25 55-79 25-49 (199)
315 3pxi_A Negative regulator of g 29.9 85 0.0029 35.7 7.5 33 57-92 523-555 (758)
316 1t1v_A SH3BGRL3, SH3 domain-bi 29.3 97 0.0033 24.3 5.8 46 347-392 3-55 (93)
317 1wcv_1 SOJ, segregation protei 29.2 39 0.0013 32.6 3.9 29 61-92 13-41 (257)
318 3cwq_A Para family chromosome 29.2 52 0.0018 30.6 4.7 41 59-103 5-47 (209)
319 3iij_A Coilin-interacting nucl 28.9 44 0.0015 30.0 4.0 25 55-79 11-35 (180)
320 3pg5_A Uncharacterized protein 28.9 34 0.0012 35.1 3.6 28 62-92 9-36 (361)
321 2oca_A DAR protein, ATP-depend 28.7 1.3E+02 0.0046 31.9 8.6 81 290-382 113-198 (510)
322 3bfv_A CAPA1, CAPB2, membrane 28.4 50 0.0017 32.3 4.6 28 62-92 90-117 (271)
323 1ccw_A Protein (glutamate muta 28.4 1.9E+02 0.0065 24.8 7.9 47 346-392 4-54 (137)
324 3nhv_A BH2092 protein; alpha-b 28.3 56 0.0019 28.4 4.5 39 343-381 70-110 (144)
325 3flh_A Uncharacterized protein 28.2 40 0.0014 28.5 3.3 37 344-380 70-108 (124)
326 2fsx_A RV0390, COG0607: rhodan 28.1 80 0.0027 27.4 5.5 38 343-380 78-116 (148)
327 2hhg_A Hypothetical protein RP 28.0 49 0.0017 28.3 4.0 38 343-380 84-122 (139)
328 1y80_A Predicted cobalamin bin 27.9 1.7E+02 0.0059 27.0 8.1 51 344-394 87-141 (210)
329 2c95_A Adenylate kinase 1; tra 27.9 46 0.0016 30.1 4.0 26 54-79 8-33 (196)
330 1g8p_A Magnesium-chelatase 38 27.8 22 0.00074 36.0 1.8 25 55-79 45-69 (350)
331 3pxi_A Negative regulator of g 27.7 50 0.0017 37.7 5.0 68 325-392 529-604 (758)
332 3la6_A Tyrosine-protein kinase 27.7 57 0.0019 32.3 4.9 32 58-92 96-127 (286)
333 1g5t_A COB(I)alamin adenosyltr 27.7 71 0.0024 29.7 5.2 35 55-92 28-62 (196)
334 2oze_A ORF delta'; para, walke 27.7 58 0.002 32.0 5.0 37 62-101 44-82 (298)
335 3sxu_A DNA polymerase III subu 27.4 61 0.0021 28.7 4.5 41 328-368 22-62 (150)
336 2yvu_A Probable adenylyl-sulfa 27.2 60 0.0021 29.2 4.7 25 57-81 15-39 (186)
337 2j48_A Two-component sensor ki 27.1 1.2E+02 0.0042 23.8 6.3 95 343-452 23-117 (119)
338 3vkg_A Dynein heavy chain, cyt 27.1 77 0.0026 42.3 6.9 65 34-98 885-949 (3245)
339 2rdm_A Response regulator rece 27.0 1.8E+02 0.0062 23.5 7.5 24 433-456 103-126 (132)
340 2woo_A ATPase GET3; tail-ancho 26.9 57 0.0019 33.0 4.8 32 58-92 22-53 (329)
341 3eod_A Protein HNR; response r 26.8 1.8E+02 0.0062 23.5 7.5 43 166-209 47-89 (130)
342 2xj4_A MIPZ; replication, cell 26.7 48 0.0016 32.6 4.1 39 61-102 11-52 (286)
343 1nlf_A Regulatory protein REPA 26.6 1.2E+02 0.0042 29.3 7.2 49 52-101 27-83 (279)
344 1e9r_A Conjugal transfer prote 26.5 46 0.0016 34.9 4.2 39 55-96 53-91 (437)
345 2px0_A Flagellar biosynthesis 26.4 65 0.0022 32.0 5.0 35 57-93 107-141 (296)
346 1hv8_A Putative ATP-dependent 26.2 2.3E+02 0.0079 28.0 9.5 87 290-387 28-120 (367)
347 1qxn_A SUD, sulfide dehydrogen 26.0 52 0.0018 28.4 3.8 38 343-380 80-118 (137)
348 2i4i_A ATP-dependent RNA helic 25.9 5.2E+02 0.018 26.0 12.9 115 290-433 37-181 (417)
349 2qxy_A Response regulator; reg 25.9 1.2E+02 0.0041 25.2 6.2 96 343-456 26-124 (142)
350 1p9r_A General secretion pathw 25.9 69 0.0024 33.7 5.3 42 37-80 151-192 (418)
351 1cr0_A DNA primase/helicase; R 25.8 98 0.0033 30.3 6.3 43 51-95 31-73 (296)
352 1qvr_A CLPB protein; coiled co 25.7 64 0.0022 37.4 5.5 33 57-92 590-622 (854)
353 1vec_A ATP-dependent RNA helic 25.4 3.6E+02 0.012 24.0 11.8 83 290-384 25-115 (206)
354 4gl2_A Interferon-induced heli 25.4 31 0.0011 38.8 2.7 83 289-383 6-98 (699)
355 1n0w_A DNA repair protein RAD5 25.3 40 0.0014 31.7 3.2 36 44-79 12-48 (243)
356 2qmh_A HPR kinase/phosphorylas 25.2 31 0.0011 32.4 2.1 24 55-78 34-57 (205)
357 3nwj_A ATSK2; P loop, shikimat 24.8 62 0.0021 31.3 4.4 37 43-79 36-72 (250)
358 1tq1_A AT5G66040, senescence-a 24.7 59 0.002 27.6 3.8 38 343-380 80-118 (129)
359 3kto_A Response regulator rece 24.6 77 0.0026 26.4 4.6 28 346-373 7-34 (136)
360 3k9g_A PF-32 protein; ssgcid, 24.5 51 0.0017 31.8 3.8 30 59-92 32-61 (267)
361 3ez2_A Plasmid partition prote 24.5 43 0.0015 34.8 3.4 34 59-92 113-149 (398)
362 3iqw_A Tail-anchored protein t 24.5 65 0.0022 32.7 4.7 41 58-101 19-61 (334)
363 2k0z_A Uncharacterized protein 24.3 78 0.0027 25.9 4.4 38 343-380 54-91 (110)
364 3qmx_A Glutaredoxin A, glutare 24.0 2.2E+02 0.0074 22.7 7.0 47 344-390 14-61 (99)
365 2v3c_C SRP54, signal recogniti 24.0 51 0.0017 34.9 3.8 35 57-94 101-135 (432)
366 3tqf_A HPR(Ser) kinase; transf 23.8 38 0.0013 31.1 2.4 24 54-77 15-38 (181)
367 1aky_A Adenylate kinase; ATP:A 23.8 52 0.0018 30.7 3.6 25 55-79 4-28 (220)
368 1kht_A Adenylate kinase; phosp 23.7 51 0.0017 29.6 3.4 25 56-80 4-28 (192)
369 3nwn_A Kinesin-like protein KI 23.4 52 0.0018 33.8 3.7 27 48-74 96-124 (359)
370 1ak2_A Adenylate kinase isoenz 23.2 53 0.0018 31.0 3.6 24 56-79 17-40 (233)
371 3to5_A CHEY homolog; alpha(5)b 23.0 94 0.0032 26.7 4.8 19 434-452 114-132 (134)
372 1ihu_A Arsenical pump-driving 23.0 69 0.0024 35.2 4.9 33 58-93 11-43 (589)
373 3dkp_A Probable ATP-dependent 22.7 96 0.0033 29.2 5.3 78 290-379 51-136 (245)
374 3dc4_A Kinesin-like protein NO 22.6 53 0.0018 33.6 3.5 25 48-72 86-112 (344)
375 4a2w_A RIG-I, retinoic acid in 22.4 1.7E+02 0.0057 34.2 8.3 84 288-383 246-338 (936)
376 1ry6_A Internal kinesin; kines 22.4 52 0.0018 33.9 3.4 21 54-74 82-104 (360)
377 2owm_A Nckin3-434, related to 22.3 64 0.0022 34.2 4.2 27 48-74 128-156 (443)
378 1bg2_A Kinesin; motor protein, 22.1 58 0.002 33.0 3.7 27 48-74 69-97 (325)
379 1q0u_A Bstdead; DEAD protein, 22.0 1.4E+02 0.0047 27.5 6.2 80 290-381 26-116 (219)
380 3kb2_A SPBC2 prophage-derived 22.0 59 0.002 28.6 3.4 22 58-79 4-25 (173)
381 3tg1_B Dual specificity protei 22.0 69 0.0024 28.3 3.8 36 345-380 93-137 (158)
382 3gbj_A KIF13B protein; kinesin 21.8 70 0.0024 32.8 4.3 27 48-74 84-112 (354)
383 1tmy_A CHEY protein, TMY; chem 21.8 1.4E+02 0.0049 23.7 5.7 18 434-451 102-119 (120)
384 1dbw_A Transcriptional regulat 21.8 1.8E+02 0.0062 23.4 6.4 18 435-452 103-120 (126)
385 2woj_A ATPase GET3; tail-ancho 21.7 70 0.0024 32.7 4.3 36 58-94 21-56 (354)
386 3dmq_A RNA polymerase-associat 21.7 2.2E+02 0.0074 33.4 9.1 84 287-380 150-235 (968)
387 2ga8_A Hypothetical 39.9 kDa p 21.7 98 0.0033 31.7 5.3 22 58-79 27-48 (359)
388 1x88_A Kinesin-like protein KI 21.6 60 0.0021 33.3 3.7 27 48-74 80-108 (359)
389 1zuh_A Shikimate kinase; alpha 21.6 59 0.002 28.7 3.3 24 56-79 8-31 (168)
390 3eod_A Protein HNR; response r 21.3 1.5E+02 0.005 24.1 5.7 29 345-373 7-35 (130)
391 2ze6_A Isopentenyl transferase 21.3 58 0.002 31.4 3.4 22 58-79 4-25 (253)
392 1vee_A Proline-rich protein fa 21.3 1.2E+02 0.004 25.8 5.1 38 343-380 72-110 (134)
393 2wbe_C Bipolar kinesin KRP-130 21.2 67 0.0023 33.2 4.0 27 48-74 92-120 (373)
394 3sqw_A ATP-dependent RNA helic 21.2 4.9E+02 0.017 28.0 11.5 87 289-385 42-143 (579)
395 2ct6_A SH3 domain-binding glut 21.1 1.6E+02 0.0056 24.0 5.8 46 346-391 8-60 (111)
396 1goj_A Kinesin, kinesin heavy 21.0 62 0.0021 33.2 3.7 28 47-74 71-100 (355)
397 1qhx_A CPT, protein (chloramph 21.0 57 0.002 29.0 3.2 24 56-79 4-27 (178)
398 1qkk_A DCTD, C4-dicarboxylate 21.0 1.2E+02 0.0041 25.8 5.3 29 345-373 3-31 (155)
399 3d1p_A Putative thiosulfate su 20.9 72 0.0025 27.3 3.6 37 344-380 90-127 (139)
400 2rhm_A Putative kinase; P-loop 20.9 49 0.0017 29.8 2.7 23 57-79 7-29 (193)
401 3ilm_A ALR3790 protein; rhodan 20.9 73 0.0025 27.6 3.7 38 343-380 54-92 (141)
402 2ius_A DNA translocase FTSK; n 20.8 1.1E+02 0.0037 33.1 5.7 42 55-96 167-209 (512)
403 3cm0_A Adenylate kinase; ATP-b 20.7 48 0.0016 29.8 2.5 24 56-79 5-28 (186)
404 2y65_A Kinesin, kinesin heavy 20.7 64 0.0022 33.2 3.7 27 48-74 76-104 (365)
405 1ypw_A Transitional endoplasmi 20.6 33 0.0011 39.6 1.6 26 54-79 237-262 (806)
406 2rjn_A Response regulator rece 20.5 1.4E+02 0.0049 25.2 5.7 29 345-373 7-35 (154)
407 4dad_A Putative pilus assembly 20.5 3.1E+02 0.011 22.7 7.8 95 346-454 46-142 (146)
408 3lua_A Response regulator rece 20.4 3.2E+02 0.011 22.3 7.9 99 344-455 28-129 (140)
409 2fz4_A DNA repair protein RAD2 20.4 3E+02 0.01 25.8 8.3 79 287-380 90-169 (237)
410 1v8k_A Kinesin-like protein KI 20.4 50 0.0017 34.6 2.8 27 48-74 146-174 (410)
411 4a14_A Kinesin, kinesin-like p 20.2 67 0.0023 32.8 3.7 26 48-73 75-102 (344)
412 2nr8_A Kinesin-like protein KI 20.1 67 0.0023 33.0 3.7 27 48-74 95-123 (358)
413 1y63_A LMAJ004144AAA protein; 20.1 66 0.0023 29.0 3.4 24 55-78 10-33 (184)
414 3b6u_A Kinesin-like protein KI 20.1 67 0.0023 33.2 3.7 27 48-74 93-121 (372)
415 1ny5_A Transcriptional regulat 20.0 1.6E+02 0.0053 30.4 6.6 38 53-93 158-195 (387)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-76 Score=693.66 Aligned_cols=465 Identities=38% Similarity=0.691 Sum_probs=380.7
Q ss_pred cCcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHH
Q 005858 29 AEFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKF 108 (673)
Q Consensus 29 ~p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~ 108 (673)
+|....++|+|||++||+||+..+..+.||||||+||+|||+|+++++..+.......+|+|||||.+++.||.+||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred CCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccH
Q 005858 109 TPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSV 188 (673)
Q Consensus 109 ~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~ 188 (673)
+|++++++|+|....+..++...+.. ...........++|+|+||+++..+...+....|++|||||||++||..++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~---~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~ 385 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYT---NPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESS 385 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCS---CC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhc---cccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhH
Confidence 99999999999998877665432110 000111245679999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
.++++.. +.+.+||+|||||++|++.|||++++||.|+.|.....|..... .......+..|+.+++++
T Consensus 386 ~~~~l~~-l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~----------~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 386 LYESLNS-FKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ----------DEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp HHHHHTT-SEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC----------TTHHHHHHHHHHHTTGGG
T ss_pred HHHHHHH-hhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc----------chhHHHHHHHHHHHHhHH
Confidence 9999986 89999999999999999999999999999999987665532111 123345688899999999
Q ss_pred HhhhhhhhhhhcCCccCCCcc------cccHHHHHHHHHHHhhhHHHH--------------Hhhcccccccccccc---
Q 005858 269 MLRRTKQKLVECGHLMLPPLT------EITVLQKKVYASILRKELPKL--------------LALSSRTANHQSLQN--- 325 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~------e~~~~Q~~~y~~~l~~~~~~l--------------~~~~~~~~~~~~l~~--- 325 (673)
++||++.++.. .+|++. ++++.|+.+|..++......+ .......++|+.+..
T Consensus 455 ~lRR~k~dv~~----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~ 530 (800)
T 3mwy_W 455 ILRRLKKDVEK----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAE 530 (800)
T ss_dssp EEECCGGGGTT----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHH
T ss_pred HhhhhHHhhhh----ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchH
Confidence 99999999865 488864 468899999999887543222 111223344544321
Q ss_pred ----------------------ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHH
Q 005858 326 ----------------------TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEE 383 (673)
Q Consensus 326 ----------------------~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~ 383 (673)
..|+|+.+|..+|..+...|+||||||+++.++++|.++|...|+++.+++|+++.++
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~e 610 (800)
T 3mwy_W 531 ERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQ 610 (800)
T ss_dssp HHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHH
T ss_pred HHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHH
Confidence 1689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEE
Q 005858 384 RFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN 463 (673)
Q Consensus 384 R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~ 463 (673)
|++++++|+++ +++.++||+||++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||+
T Consensus 611 R~~~i~~F~~~-----------~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 611 RRISIDHFNSP-----------DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp HHHHHHTTSST-----------TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred HHHHHHHhhCC-----------CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 99999999965 4677899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhh-hhhcccChHHHHHHh-hccc-ccCCc
Q 005858 464 LVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREV-KERTAVETDDLRSII-FGLH-LFDPK 522 (673)
Q Consensus 464 lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~-~~~~~~~~~dl~~~~-~g~~-~~~~~ 522 (673)
|++++|+||+|++++..|+.+.+.+++.+..+... .+....+.++|.+++ ||+. .|...
T Consensus 680 lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~ 741 (800)
T 3mwy_W 680 LVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTAT 741 (800)
T ss_dssp EEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSH
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhcc
Confidence 99999999999999999999999999877654322 123456889999996 8874 55543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.1e-72 Score=643.14 Aligned_cols=456 Identities=30% Similarity=0.514 Sum_probs=375.2
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHh-----cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC----CCCEEEEECcccHHH
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRY-----LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS----PGPFLVLCPLSVTDG 100 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~-----~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~----~~~~LIV~P~sll~~ 100 (673)
+..+...|+|||++||.||+..+ ..+.||||||+||+|||+|+++++..+...+.. .+++|||||.+++.|
T Consensus 49 ~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~q 128 (644)
T 1z3i_X 49 DPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRN 128 (644)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHH
T ss_pred ChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHH
Confidence 44567899999999999999875 356789999999999999999999988665532 345999999999999
Q ss_pred HHHHHHHHCCC-CeEEEEeCC-hHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcC
Q 005858 101 WVSEMAKFTPK-LEVLRYVGE-REQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDE 178 (673)
Q Consensus 101 W~~E~~k~~p~-~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDE 178 (673)
|.+||.+|+|. +.++.+.|. ....... +..... .......++++|+||+++..+...+....|++||+||
T Consensus 129 W~~E~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-----~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 129 WYNEVGKWLGGRVQPVAIDGGSKDEIDSK---LVNFIS-----QQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHHHHGGGCCEEEECSSCHHHHHHH---HHHHHC-----CCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETT
T ss_pred HHHHHHHHcCCCeeEEEEeCCCHHHHHHH---HHHHHH-----hcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEEC
Confidence 99999999875 555555543 3322211 111111 1112345899999999999999999999999999999
Q ss_pred CccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCC-----Ccchhhh
Q 005858 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS-----SAPKRGK 253 (673)
Q Consensus 179 aH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~-----~~~~~~~ 253 (673)
||++||..++.++++.. +.+.+||+|||||++|++.|||++++|+.|+.+++...|...|..++... .......
T Consensus 201 aH~ikn~~~~~~~al~~-l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNS-MNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp GGGCCTTCHHHHHHHHH-HCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred ceecCChhhHHHHHHHh-cccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 99999999999999986 89999999999999999999999999999999999999999998876421 1222333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhHH--------------HHHhh
Q 005858 254 IKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELP--------------KLLAL 313 (673)
Q Consensus 254 ~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~~--------------~l~~~ 313 (673)
..+.+.+|+.++.++++||++.++.. .+|++.+ +++.|+.+|+.++..... .....
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~----~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~ 355 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSK----YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITS 355 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGG----TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhh----hCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 45678899999999999999998865 4888754 788999999988754210 01111
Q ss_pred ccccccccccc----------------------------cccCCcHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHH
Q 005858 314 SSRTANHQSLQ----------------------------NTASGKLVVLDLLLKKLYN-SGHRVLLFAQMTQTLDILQDF 364 (673)
Q Consensus 314 ~~~~~~~~~l~----------------------------~~~s~Kl~~l~~ll~~~~~-~g~kvlIFsq~~~~ld~l~~~ 364 (673)
....++|+.+. ...|+|+.++..++..+.. .++|+||||+++.+++.|+.+
T Consensus 356 Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~ 435 (644)
T 1z3i_X 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKL 435 (644)
T ss_dssp HHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHH
Confidence 11222333221 1258999999999998864 689999999999999999999
Q ss_pred HHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHH
Q 005858 365 LELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 444 (673)
Q Consensus 365 L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~ 444 (673)
|...|+++.+++|+++.++|.+++++|+++ ....++||+||++||+||||+.|++||+||++|||+.+.
T Consensus 436 l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~-----------~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~ 504 (644)
T 1z3i_X 436 CRNRRYLYVRLDGTMSIKKRAKIVERFNNP-----------SSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDE 504 (644)
T ss_dssp HHHHTCCEEEECSSCCHHHHHHHHHHHHST-----------TCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHH
T ss_pred HHHCCCCEEEEeCCCCHHHHHHHHHHhcCC-----------CCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHH
Confidence 999999999999999999999999999955 344679999999999999999999999999999999999
Q ss_pred HHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCCcccchhhhhhcccChHHHHHHhhc
Q 005858 445 QALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGDDVVDREVKERTAVETDDLRSIIFG 515 (673)
Q Consensus 445 Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~~g 515 (673)
||+||+||+||+++|+||+|++.+|+||+|++++..|..+++.+++++... ...++.+||+.+ |+
T Consensus 505 Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~-----~~~~~~~~l~~L-f~ 569 (644)
T 1z3i_X 505 QAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDV-----ERHFSLGELREL-FS 569 (644)
T ss_dssp HHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSC-----CCSSCHHHHHHH-TC
T ss_pred HHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchh-----hcCCCHHHHHHH-hC
Confidence 999999999999999999999999999999999999999999999875321 235688999887 54
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.5e-67 Score=586.06 Aligned_cols=436 Identities=32% Similarity=0.557 Sum_probs=367.2
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
|.++...|+|||.+|+.|+......+.|+||||+||+|||+++++++..+...+ ..+++|||||.+++.||.+|+.+|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccHHHHHHHHHHHHHHC
Confidence 778899999999999999998877889999999999999999999998886443 4568999999999999999999999
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHH
Q 005858 110 PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVL 189 (673)
Q Consensus 110 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~ 189 (673)
|..++.+++|.... .....++++|+||+.+..+.. +....|++||+||||+++|..+..
T Consensus 110 ~~~~v~~~~g~~~~--------------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 110 PHLRFAVFHEDRSK--------------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp TTSCEEECSSSTTS--------------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred CCceEEEEecCchh--------------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHH
Confidence 99999999887521 122357999999999987655 677899999999999999999999
Q ss_pred HHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q 005858 190 YNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269 (673)
Q Consensus 190 ~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 269 (673)
++++.. +.++++|+|||||++|++.|+|++++|+.|+.+++...|...|..++.... ......|+.++.+++
T Consensus 169 ~~~l~~-l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~-------~~~~~~l~~~l~~~~ 240 (500)
T 1z63_A 169 FKAVKE-LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD-------NMAKEELKAIISPFI 240 (500)
T ss_dssp HHHHHT-SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC-------HHHHHHHHHHHTTTE
T ss_pred HHHHHh-hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc-------HHHHHHHHHHHhhHe
Confidence 999986 788999999999999999999999999999999999999999988765321 245677899999999
Q ss_pred hhhhhhhhhhcCCccCCCcc------cccHHHHHHHHHHHhhhHHHH---------------Hhhccccccccccc----
Q 005858 270 LRRTKQKLVECGHLMLPPLT------EITVLQKKVYASILRKELPKL---------------LALSSRTANHQSLQ---- 324 (673)
Q Consensus 270 lrr~k~~v~~~~~~~lp~~~------e~~~~Q~~~y~~~l~~~~~~l---------------~~~~~~~~~~~~l~---- 324 (673)
+||++.+... ...+|++. ++++.|+..|..+.......+ .......+.|+.+.
T Consensus 241 lrr~k~~~~~--~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~ 318 (500)
T 1z63_A 241 LRRTKYDKAI--INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE 318 (500)
T ss_dssp ECCCTTCHHH--HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC
T ss_pred eeecccccch--hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCcc
Confidence 9999876211 12478764 467899999988765422111 11112223344332
Q ss_pred --cccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhh
Q 005858 325 --NTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR-KYSYERLDGSIRAEERFAAIRHFSVQSAIERLY 401 (673)
Q Consensus 325 --~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~ 401 (673)
...++|+..+.+++..+...++|+||||++..+++.+.+.|... |+.+.+++|+++.++|.+++++|+++
T Consensus 319 ~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~------- 391 (500)
T 1z63_A 319 QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN------- 391 (500)
T ss_dssp CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHC-------
T ss_pred chhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCC-------
Confidence 23588999999999999999999999999999999999999886 99999999999999999999999844
Q ss_pred hhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHH
Q 005858 402 SEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481 (673)
Q Consensus 402 ~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K 481 (673)
+...++|+||+++|+|+||+.|++||+||++|||..+.||+||+||+||+++|+||+|++++|+||+|++++..|
T Consensus 392 -----~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K 466 (500)
T 1z63_A 392 -----PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFK 466 (500)
T ss_dssp -----TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTC
T ss_pred -----CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHH
Confidence 356689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCcccchhhhhhcccChHHHHHHhhc
Q 005858 482 LRLSHNVVGDDVVDREVKERTAVETDDLRSIIFG 515 (673)
Q Consensus 482 ~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~~~g 515 (673)
..+++.+++++.. ....++.+||+.+ |+
T Consensus 467 ~~l~~~~~~~~~~-----~~~~~~~~~l~~l-~~ 494 (500)
T 1z63_A 467 RSLFKDIISSGDS-----WITELSTEELRKV-IE 494 (500)
T ss_dssp SSSSSSGGGSTTG-----GGGSSCHHHHHHH-HS
T ss_pred HHHHHHHhhcCcc-----hhccCCHHHHHHH-hc
Confidence 9999999987542 2345788899887 44
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.9e-49 Score=469.92 Aligned_cols=423 Identities=20% Similarity=0.245 Sum_probs=309.9
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPK 111 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~ 111 (673)
+...+|+|||.+++.|++... +.++||||+||+|||+++++++..+...+ ..+++|||||.+++.||..||.+++ +
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~ 224 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-N 224 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-C
T ss_pred CCCCCCcHHHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHHHHHh-C
Confidence 456889999999999998753 56899999999999999999998886554 4567999999999999999998888 6
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccCcccH
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKNPSSV 188 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN~~s~ 188 (673)
.++.+++|+...... . ........++++|+||+.+.++. ..+....|++|||||||+++|..+.
T Consensus 225 l~v~v~~~~~~~~~~-~------------~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~ 291 (968)
T 3dmq_A 225 LRFALFDDERYAEAQ-H------------DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDA 291 (968)
T ss_dssp CCCEECCHHHHHHHH-H------------TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTB
T ss_pred CCEEEEccchhhhhh-h------------hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCc
Confidence 777777665432110 0 00123345799999999998764 3366778999999999999987654
Q ss_pred ---HHHHHHhhc--CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccC------C------Ccch-
Q 005858 189 ---LYNVLREHF--LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHS------S------SAPK- 250 (673)
Q Consensus 189 ---~~~~l~~~~--~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~------~------~~~~- 250 (673)
.++.+.. + .++++|+|||||++|++.|+|++++|+.|+.+++...|...+...... . ....
T Consensus 292 ~s~~~~~l~~-L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 370 (968)
T 3dmq_A 292 PSREYQAIEQ-LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDEL 370 (968)
T ss_dssp CCHHHHHHHH-HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGT
T ss_pred chHHHHHHHH-HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHH
Confidence 3666665 4 678899999999999999999999999999999999998775432200 0 0000
Q ss_pred -----------------------hhhHHHHHHHHHHHHH-----HHHhhhhhhhhhhcCCccCCCc------ccccHHHH
Q 005858 251 -----------------------RGKIKEQFTSLKGILS-----AFMLRRTKQKLVECGHLMLPPL------TEITVLQK 296 (673)
Q Consensus 251 -----------------------~~~~~~~~~~L~~~l~-----~~~lrr~k~~v~~~~~~~lp~~------~e~~~~Q~ 296 (673)
..........+..++. ..++|+++..+. .+|+. ..++....
T Consensus 371 ~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-----~~p~r~~~~~~l~~~~~~~ 445 (968)
T 3dmq_A 371 NMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-----GFPKRELHTIKLPLPTQYQ 445 (968)
T ss_dssp TSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-----CCCCCCCCEEEECCCHHHH
T ss_pred HHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-----ccChhheEeeecCCCHHHH
Confidence 0000011112222221 233444444432 13332 23445555
Q ss_pred HHHHHHHhhhHHH------HHhhcccc-----ccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHH
Q 005858 297 KVYASILRKELPK------LLALSSRT-----ANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFL 365 (673)
Q Consensus 297 ~~y~~~l~~~~~~------l~~~~~~~-----~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L 365 (673)
..|.......... ........ ..........+.|+..|..++.. ..+.|+||||++..+++.+...|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L 523 (968)
T 3dmq_A 446 TAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVL 523 (968)
T ss_dssp HHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHH
Confidence 5554322110000 00000000 00000112356789999998887 67899999999999999999999
Q ss_pred Hh-CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHH
Q 005858 366 EL-RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 444 (673)
Q Consensus 366 ~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~ 444 (673)
.. .|+++..++|+++..+|..+++.|++. .+...+|++|+++|+|||++.|++||+||+||||..+.
T Consensus 524 ~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g------------~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~ 591 (968)
T 3dmq_A 524 REREGIRAAVFHEGMSIIERDRAAAWFAEE------------DTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591 (968)
T ss_dssp HTTTCCCEEEECTTSCTTHHHHHHHHHHST------------TSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHH
T ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHHHhCC------------CCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHH
Confidence 95 599999999999999999999999943 22356677889999999999999999999999999999
Q ss_pred HHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHhHhcCC
Q 005858 445 QALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSHNVVGD 491 (673)
Q Consensus 445 Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~~vi~~ 491 (673)
|++||++|+||++.|.||++++.+|+|++|++.+..|..+....+..
T Consensus 592 Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 592 QRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp HHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred HHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 99999999999999999999999999999999999998876655543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-45 Score=407.38 Aligned_cols=408 Identities=16% Similarity=0.173 Sum_probs=279.5
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--C
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--P 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p 110 (673)
..+|+|||.+++.|++.. ++||+++||+|||++++.++..+.. ...+++|||||. +++.||.+++.+|+ |
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-----~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-----NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-----CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCccHHHHHHHHHHhhC-----CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 467999999999988663 8999999999999999999877654 235679999997 89999999999998 5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccccCccc-
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRLKNPSS- 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~KN~~s- 187 (673)
...+..++|........ .... .++++|+||+.+..... .+....|++||+||||++++..+
T Consensus 80 ~~~v~~~~g~~~~~~~~--~~~~--------------~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~ 143 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERS--KAWA--------------RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAY 143 (494)
T ss_dssp GGGEEEECSCSCHHHHH--HHHH--------------HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHH
T ss_pred hhheEEeeCCcchhhhh--hhcc--------------CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcH
Confidence 66899898876544321 1111 26899999999987543 45667899999999999997533
Q ss_pred -HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCC---ChHHHHHHhhhhccCCCcchhhhHHHHHHHHHH
Q 005858 188 -VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFG---TLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKG 263 (673)
Q Consensus 188 -~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~---~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~ 263 (673)
.....+....+..++|+|||||. |+..+++.++.++.+.... ....+...|...... .............+..
T Consensus 144 ~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 220 (494)
T 1wp9_A 144 VFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF--EWVRVDLPEIYKEVRK 220 (494)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE--EEEEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCce--eEEecCCcHHHHHHHH
Confidence 22233333356788999999999 7788899998888654321 111111111111000 0000011123455666
Q ss_pred HHHHHHhhhhhhhhhhcCCccCCCc-----ccccHHHHHHHHHHHh----------------------------------
Q 005858 264 ILSAFMLRRTKQKLVECGHLMLPPL-----TEITVLQKKVYASILR---------------------------------- 304 (673)
Q Consensus 264 ~l~~~~lrr~k~~v~~~~~~~lp~~-----~e~~~~Q~~~y~~~l~---------------------------------- 304 (673)
.+.+++.++.+...... +..|.. .++......++..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (494)
T 1wp9_A 221 LLREMLRDALKPLAETG--LLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALR 298 (494)
T ss_dssp HHHHHHHHHHHHHHHHT--SSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--cccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHH
Confidence 77777777776544321 111110 0111111111110000
Q ss_pred hhHHHHHhhccc--------ccccc------------ccccccCCcHHHHHHHHHHHH--hCCCeEEEEecCchHHHHHH
Q 005858 305 KELPKLLALSSR--------TANHQ------------SLQNTASGKLVVLDLLLKKLY--NSGHRVLLFAQMTQTLDILQ 362 (673)
Q Consensus 305 ~~~~~l~~~~~~--------~~~~~------------~l~~~~s~Kl~~l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~ 362 (673)
.....+...... ....+ ......++|+..|.+++..+. ..++|+||||++..+++.+.
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~ 378 (494)
T 1wp9_A 299 AYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIV 378 (494)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHH
Confidence 000000000000 00000 001146789999999999876 57899999999999999999
Q ss_pred HHHHhCCCcEEEEeC--------CcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEee
Q 005858 363 DFLELRKYSYERLDG--------SIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFY 434 (673)
Q Consensus 363 ~~L~~~g~~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~ 434 (673)
++|...|+.+..++| +++.++|.++++.|++ +. ..+|++|+++|+|||++.|++||+|
T Consensus 379 ~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-------------~~-~~vLv~T~~~~~Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 379 NELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-------------GE-FNVLVATSVGEEGLDVPEVDLVVFY 444 (494)
T ss_dssp HHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-------------TS-CSEEEECGGGGGGGGSTTCCEEEES
T ss_pred HHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc-------------CC-ceEEEECCccccCCCchhCCEEEEe
Confidence 999999999999999 8999999999999983 33 3468889999999999999999999
Q ss_pred CCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHHHHh
Q 005858 435 EQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLRLSH 486 (673)
Q Consensus 435 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~~ 486 (673)
|++|||..+.||+||++|.|| +.+|+|++++|+||.++.++..|.++++
T Consensus 445 d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 445 EPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp SCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998 8999999999999999999999987764
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.4e-40 Score=364.95 Aligned_cols=347 Identities=17% Similarity=0.179 Sum_probs=239.7
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCC
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPK 111 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~ 111 (673)
...+|+|||.+++.+++.. .+++|+++||+|||++++.++..+ .+++|||||. +++.||.++|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~----~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD----KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT----TEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHhc----CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 4678999999999876653 579999999999999999888765 3679999998 8999999999995 4
Q ss_pred Ce-EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHH
Q 005858 112 LE-VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLY 190 (673)
Q Consensus 112 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~ 190 (673)
.. +.+++|... ...+++|+||+.+......+. ..|++||+||||++.+....
T Consensus 158 ~~~v~~~~g~~~------------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~-- 210 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV-- 210 (472)
T ss_dssp GGGEEEBSSSCB------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--
T ss_pred CcceEEECCCcC------------------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--
Confidence 56 777777542 135899999999977665442 35999999999999987543
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHh
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l 270 (673)
. +...+.+.++++|||||.+++..+. .+..++.| .+.
T Consensus 211 ~-~~~~~~~~~~l~lSATp~~~~~~~~-~l~~~~~~-----------------------------------------~~~ 247 (472)
T 2fwr_A 211 Q-IAQMSIAPFRLGLTATFEREDGRHE-ILKEVVGG-----------------------------------------KVF 247 (472)
T ss_dssp H-HHHTCCCSEEEEEESCCCCTTSGGG-SHHHHTCC-----------------------------------------EEE
T ss_pred H-HHHhcCCCeEEEEecCccCCCCHHH-HHHHHhCC-----------------------------------------eEe
Confidence 2 3445788899999999997653321 11122222 222
Q ss_pred hhhhhhhhhcCCccCCC------cccccHHHHHHHHHHHhhhHHHHHhhc------cccc-----------c--------
Q 005858 271 RRTKQKLVECGHLMLPP------LTEITVLQKKVYASILRKELPKLLALS------SRTA-----------N-------- 319 (673)
Q Consensus 271 rr~k~~v~~~~~~~lp~------~~e~~~~Q~~~y~~~l~~~~~~l~~~~------~~~~-----------~-------- 319 (673)
++...++... .+++ ..++++.+...|..+.......+.... .... .
T Consensus 248 ~~~~~~l~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (472)
T 2fwr_A 248 ELFPDSLAGK---HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWE 324 (472)
T ss_dssp ECCHHHHTSC---CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHH
T ss_pred ecCHHHHhcC---cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHH
Confidence 2222222110 1111 123455565555433221110000000 0000 0
Q ss_pred -ccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHh
Q 005858 320 -HQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIE 398 (673)
Q Consensus 320 -~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 398 (673)
...+....+.|+..|..++.. ..++++||||++...++.+.+.|. +..++|+++..+|.++++.|+
T Consensus 325 ~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~------ 391 (472)
T 2fwr_A 325 EARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFR------ 391 (472)
T ss_dssp HHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHH------
T ss_pred HHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHh------
Confidence 000011256788888888877 578999999999999999999884 456899999999999999998
Q ss_pred hhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCc-CeEEEEEEecCCCHHHHHHHH
Q 005858 399 RLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM-NHVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 399 ~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~-k~V~Vy~lv~~~TiEe~i~~~ 477 (673)
++.. .+|++|+++++|+|++.+++||++|++|||..+.|+.||++|.||. +.|.+|.|++++|+||++.++
T Consensus 392 -------~g~~-~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~ 463 (472)
T 2fwr_A 392 -------TGRF-RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARR 463 (472)
T ss_dssp -------HSSC-SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-------
T ss_pred -------CCCC-CEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHH
Confidence 2333 4578899999999999999999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHH
Q 005858 478 AERKLRLS 485 (673)
Q Consensus 478 ~~~K~~l~ 485 (673)
...|.+++
T Consensus 464 r~~~~~~a 471 (472)
T 2fwr_A 464 RKNAAKGA 471 (472)
T ss_dssp --------
T ss_pred HHHhhccC
Confidence 98877653
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.9e-37 Score=345.51 Aligned_cols=411 Identities=16% Similarity=0.173 Sum_probs=220.9
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC--CCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS--PGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~--~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
..+|+|||.+++.+++. +.++|++++||+|||++++..+......... .+++|||||. .++.||.+++.++++
T Consensus 5 ~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ---CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999998865 5789999999999999998887666544321 5679999998 889999999999986
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--c-cCCCccEEEEcCCccccCc
Q 005858 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--L-SQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 111 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l-~~~~~~~vIvDEaH~~KN~ 185 (673)
++++..++|........... .. .++++|+||+.+...... + ....|++||+||||++.+.
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~-~~--------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKV-IE--------------DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 145 (556)
T ss_dssp GGTCCEEECCCC-----CHHHH-HH--------------HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT
T ss_pred ccCceEEEEeCCCCcchhHHHh-hC--------------CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc
Confidence 78888888877443322211 11 268999999999765422 3 4456899999999999876
Q ss_pred ccHHHHHHHhhc--------CCCcEEEEecCCCCCCHH-------HHHHHHHHhCCCCCC----ChHHHHHHhhhhccC-
Q 005858 186 SSVLYNVLREHF--------LMPRRLLMTGTPIQNNLS-------ELWALMHFCMPSVFG----TLNQFLSTFKDAVHS- 245 (673)
Q Consensus 186 ~s~~~~~l~~~~--------~~~~rllLTGTPi~N~~~-------El~~ll~~l~p~~~~----~~~~f~~~f~~~~~~- 245 (673)
.. ....+...+ +..++++|||||.+++.. .+..+...+.+..+. ....+...+..+...
T Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (556)
T 4a2p_A 146 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 224 (556)
T ss_dssp SH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEE
T ss_pred ch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEE
Confidence 54 222222211 336789999999887643 333444555543221 223333333222110
Q ss_pred --CC----cchhhhHHHHHHHHHHHHHH----------------------HHhhhhhhhhhhcCCccCCCcccccHHHHH
Q 005858 246 --SS----APKRGKIKEQFTSLKGILSA----------------------FMLRRTKQKLVECGHLMLPPLTEITVLQKK 297 (673)
Q Consensus 246 --~~----~~~~~~~~~~~~~L~~~l~~----------------------~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~ 297 (673)
.. .............+...+.. ++....+..... .+|..... ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~ 296 (556)
T 4a2p_A 225 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLL----QLEDKEEE----SR 296 (556)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------CHHHH----HH
T ss_pred EEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhh----cccccchh----HH
Confidence 00 11111111122222222221 111111110000 11111100 00
Q ss_pred HHHHHH----------------------------hhhHHHHHhhc----------------cccccccccccccCCcHHH
Q 005858 298 VYASIL----------------------------RKELPKLLALS----------------SRTANHQSLQNTASGKLVV 333 (673)
Q Consensus 298 ~y~~~l----------------------------~~~~~~l~~~~----------------~~~~~~~~l~~~~s~Kl~~ 333 (673)
.|..+. ......+.... .............++|+..
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~ 376 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEE 376 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHH
Confidence 010000 00000000000 0000000001124889999
Q ss_pred HHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHhC------------CCcEEEEeCCcCHHHHHHHHHhhccchhHhh
Q 005858 334 LDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLELR------------KYSYERLDGSIRAEERFAAIRHFSVQSAIER 399 (673)
Q Consensus 334 l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~ 399 (673)
|..+|.... ..++|+||||++..+++.|.++|... |..+..++|+++.++|.+++++|+++
T Consensus 377 L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~----- 451 (556)
T 4a2p_A 377 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS----- 451 (556)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------------
T ss_pred HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc-----
Confidence 999998776 67899999999999999999999765 55666677889999999999999932
Q ss_pred hhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 400 ~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
+. ..+|++|+++|+|||++.+++||+||+||||..+.||+|| +| .+++.+|.|++.++++++ +....
T Consensus 452 -------g~-~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~ 518 (556)
T 4a2p_A 452 -------KD-NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNR 518 (556)
T ss_dssp ----------CCEEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHH
T ss_pred -------Cc-eEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhH
Confidence 33 3468999999999999999999999999999999999999 44 578899999999999999 66777
Q ss_pred HHHHHHhHhcC
Q 005858 480 RKLRLSHNVVG 490 (673)
Q Consensus 480 ~K~~l~~~vi~ 490 (673)
.|..+...++.
T Consensus 519 ~k~~~~~~~i~ 529 (556)
T 4a2p_A 519 YKEEMMNKAVE 529 (556)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=341.58 Aligned_cols=413 Identities=15% Similarity=0.163 Sum_probs=239.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC--CCCEEEEECc-ccHHHHHHHHHHHCC-
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS--PGPFLVLCPL-SVTDGWVSEMAKFTP- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~--~~~~LIV~P~-sll~~W~~E~~k~~p- 110 (673)
++|+|||.+++.+++. +.++|++++||+|||++++..+......... .+++|||||. .++.||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 6799999999998864 5789999999999999998888666544321 5679999998 889999999999975
Q ss_pred -CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--c-cCCCccEEEEcCCccccCcc
Q 005858 111 -KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--L-SQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 111 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l-~~~~~~~vIvDEaH~~KN~~ 186 (673)
++.+..++|+.......... .. .++++|+||+.+...... + ....|++||+||||++.+..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~-~~--------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHI-IE--------------DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHH-HH--------------HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred CCcEEEEEcCCCcchhhHHHH-hc--------------CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 67888888877543322111 11 268999999999765432 2 34468999999999998865
Q ss_pred cHHHHHHHhhc---------CCCcEEEEecCCCCCCHH-------HHHHHHHHhCCCCCC----ChHHHHHHhhhhccC-
Q 005858 187 SVLYNVLREHF---------LMPRRLLMTGTPIQNNLS-------ELWALMHFCMPSVFG----TLNQFLSTFKDAVHS- 245 (673)
Q Consensus 187 s~~~~~l~~~~---------~~~~rllLTGTPi~N~~~-------El~~ll~~l~p~~~~----~~~~f~~~f~~~~~~- 245 (673)
+ ....+...+ ...++++|||||.+++.. .+..+...+.+..+. ....+...+..+...
T Consensus 144 ~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 222 (555)
T 3tbk_A 144 P-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKIS 222 (555)
T ss_dssp H-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEE
T ss_pred h-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEE
Confidence 3 222221111 335789999999988743 344445555543221 222222222211100
Q ss_pred ------CCcchhhhHHHHHHHHHHHHHHHH-----------------------hhhhhhhhhhcCCccCCCcccccHHHH
Q 005858 246 ------SSAPKRGKIKEQFTSLKGILSAFM-----------------------LRRTKQKLVECGHLMLPPLTEITVLQK 296 (673)
Q Consensus 246 ------~~~~~~~~~~~~~~~L~~~l~~~~-----------------------lrr~k~~v~~~~~~~lp~~~e~~~~Q~ 296 (673)
...............+..++..++ ....+... ...+|..........
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 298 (555)
T 3tbk_A 223 RKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACS----VFQMADKEEESRVCK 298 (555)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHH----TCCCSSHHHHHHHHH
T ss_pred EEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhh----hhhccchhhHHHHHH
Confidence 001111111122222233322211 00000000 001111110000000
Q ss_pred ---------HHHHHHHh-hh----------HHHHHhhccc--------------------cccccccccccCCcHHHHHH
Q 005858 297 ---------KVYASILR-KE----------LPKLLALSSR--------------------TANHQSLQNTASGKLVVLDL 336 (673)
Q Consensus 297 ---------~~y~~~l~-~~----------~~~l~~~~~~--------------------~~~~~~l~~~~s~Kl~~l~~ 336 (673)
..|...+. .. ...+...... ...........++|+..|..
T Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 378 (555)
T 3tbk_A 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYL 378 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHH
Confidence 00000000 00 0000000000 00000001124789999999
Q ss_pred HHHHHHh--CCCeEEEEecCchHHHHHHHHHHhCC------------CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhh
Q 005858 337 LLKKLYN--SGHRVLLFAQMTQTLDILQDFLELRK------------YSYERLDGSIRAEERFAAIRHFSVQSAIERLYS 402 (673)
Q Consensus 337 ll~~~~~--~g~kvlIFsq~~~~ld~l~~~L~~~g------------~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~ 402 (673)
+|..+.. .++++||||++..+++.|.++|...+ ..+..++|+++.++|.+++++|+++
T Consensus 379 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~-------- 450 (555)
T 3tbk_A 379 VLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS-------- 450 (555)
T ss_dssp HHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------------
T ss_pred HHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC--------
Confidence 9988764 45899999999999999999998763 4555666799999999999999932
Q ss_pred hcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHH
Q 005858 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKL 482 (673)
Q Consensus 403 ~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~ 482 (673)
+... +|++|+++|+|||++.+++||+||+||||..+.||+|| |+.+++.+|.|++.++.++. ......|.
T Consensus 451 ----g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e 520 (555)
T 3tbk_A 451 ----GDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKE 520 (555)
T ss_dssp -----CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred ----CCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHH
Confidence 3344 57899999999999999999999999999999999999 66689999999999999888 55556666
Q ss_pred HHHhHhc
Q 005858 483 RLSHNVV 489 (673)
Q Consensus 483 ~l~~~vi 489 (673)
.+.+..+
T Consensus 521 ~~~~~~~ 527 (555)
T 3tbk_A 521 KIMNESI 527 (555)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4e-36 Score=354.07 Aligned_cols=415 Identities=16% Similarity=0.153 Sum_probs=228.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC--CCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS--PGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~--~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
..+|+|||.+++.+++. +.++|++++||+|||++++..+......... .+++|||||. .++.||.+++.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 57899999999988764 5789999999999999998888766544321 5679999996 688999999999987
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cc-cCCCccEEEEcCCccccCc
Q 005858 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FL-SQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 111 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l-~~~~~~~vIvDEaH~~KN~ 185 (673)
++++..++|+.......... . ..++|+|+||+.+..... .+ ....|++|||||||++.+.
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~-~--------------~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKV-I--------------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp GGTCCEEEECCC-----CHHHH-H--------------HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred cCCceEEEEeCCcchhhhHHHh-h--------------CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 78999999887543322211 1 136899999999976532 22 3446899999999999886
Q ss_pred ccHHHHHHHhh--------cCCCcEEEEecCCCCCCHHHHHH-------HHHHhCCCCC----CChHHHHHHhhhhccC-
Q 005858 186 SSVLYNVLREH--------FLMPRRLLMTGTPIQNNLSELWA-------LMHFCMPSVF----GTLNQFLSTFKDAVHS- 245 (673)
Q Consensus 186 ~s~~~~~l~~~--------~~~~~rllLTGTPi~N~~~El~~-------ll~~l~p~~~----~~~~~f~~~f~~~~~~- 245 (673)
.. ....+... ....++++|||||.+++..++.. +...+.+..+ .....+...+..+...
T Consensus 387 ~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~ 465 (797)
T 4a2q_A 387 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (797)
T ss_dssp SH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEE
T ss_pred cc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEE
Confidence 54 22222221 22367899999998876544333 3333443221 1223333333322211
Q ss_pred ------CCcchhhhHHHHHHHHHHHHHHHH----------------------hhhhhhhhhhcCCccCCCcccccHHH--
Q 005858 246 ------SSAPKRGKIKEQFTSLKGILSAFM----------------------LRRTKQKLVECGHLMLPPLTEITVLQ-- 295 (673)
Q Consensus 246 ------~~~~~~~~~~~~~~~L~~~l~~~~----------------------lrr~k~~v~~~~~~~lp~~~e~~~~Q-- 295 (673)
...............++.++..++ ....+.... ..+|.........
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 541 (797)
T 4a2q_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL----LQLEDKEEESRICRA 541 (797)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHH----CCCSSHHHHHHHHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHH----hcccccchhhHHHHH
Confidence 011111122223333333333322 111110000 0112111100000
Q ss_pred HHHHHHHHhh----------------------hHHHHHhhc----------------cccccccccccccCCcHHHHHHH
Q 005858 296 KKVYASILRK----------------------ELPKLLALS----------------SRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 296 ~~~y~~~l~~----------------------~~~~l~~~~----------------~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
...+...+.. ......... .............++|+..|..+
T Consensus 542 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~l 621 (797)
T 4a2q_A 542 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCI 621 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Confidence 0000000000 000000000 00000000011248899999999
Q ss_pred HHHHH--hCCCeEEEEecCchHHHHHHHHHHhC------------CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhh
Q 005858 338 LKKLY--NSGHRVLLFAQMTQTLDILQDFLELR------------KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403 (673)
Q Consensus 338 l~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~ 403 (673)
|.... ..++|+||||+++.+++.|.++|... |..+..++|+++.++|..++++|+++
T Consensus 622 L~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~--------- 692 (797)
T 4a2q_A 622 LDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--------- 692 (797)
T ss_dssp HHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------------------
T ss_pred HHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc---------
Confidence 98754 56799999999999999999999763 66677788899999999999999932
Q ss_pred cCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHH
Q 005858 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLR 483 (673)
Q Consensus 404 ~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~ 483 (673)
+...+|++|+++|+|||++.|++||+||+||||..+.||+|| +| .+++.+|.|++.++++++ +.....|..
T Consensus 693 ----g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~ 763 (797)
T 4a2q_A 693 ----KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEE 763 (797)
T ss_dssp -----CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHH
T ss_pred ----CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHH
Confidence 333478999999999999999999999999999999999999 45 588999999999999999 777778877
Q ss_pred HHhHhcC
Q 005858 484 LSHNVVG 490 (673)
Q Consensus 484 l~~~vi~ 490 (673)
+...++.
T Consensus 764 ~~~~~i~ 770 (797)
T 4a2q_A 764 MMNKAVE 770 (797)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6.9e-36 Score=356.09 Aligned_cols=415 Identities=16% Similarity=0.163 Sum_probs=228.4
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC--CCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM--SPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
..+|+|||.+++.+++. +.++|++++||+|||++++..+........ ..+++|||||. .++.||.+++.++++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 57899999999998865 578999999999999999888766543332 15679999996 688999999999986
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--c-cCCCccEEEEcCCccccCc
Q 005858 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--L-SQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 111 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l-~~~~~~~vIvDEaH~~KN~ 185 (673)
++++..++|+.......... .. .++++|+||+.+...... + ....|++||+||||++.+.
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~-~~--------------~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKV-IE--------------DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp TTTCCEEEECCC-----CCHHH-HH--------------HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred ccCceEEEEECCcchhhHHHHh-cc--------------CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 78899999887543322111 11 268999999999765422 2 3346899999999999986
Q ss_pred ccHHHHHHHhh--------cCCCcEEEEecCCCCCCHHHHHH-------HHHHhCCCCC----CChHHHHHHhhhhccC-
Q 005858 186 SSVLYNVLREH--------FLMPRRLLMTGTPIQNNLSELWA-------LMHFCMPSVF----GTLNQFLSTFKDAVHS- 245 (673)
Q Consensus 186 ~s~~~~~l~~~--------~~~~~rllLTGTPi~N~~~El~~-------ll~~l~p~~~----~~~~~f~~~f~~~~~~- 245 (673)
.+ ....+... ....++++|||||.+++..++.. +...+.+..+ .....+...+..+...
T Consensus 387 ~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 387 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp CH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEE
T ss_pred cc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceE
Confidence 54 22222221 12367899999999877544443 3333443221 1223333333322211
Q ss_pred --C----CcchhhhHHHHHHHHHHHHHHH----------------------HhhhhhhhhhhcCCccCCCcccccHHHHH
Q 005858 246 --S----SAPKRGKIKEQFTSLKGILSAF----------------------MLRRTKQKLVECGHLMLPPLTEITVLQKK 297 (673)
Q Consensus 246 --~----~~~~~~~~~~~~~~L~~~l~~~----------------------~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~ 297 (673)
. ..............++.++..+ +....+.... ..+|...........
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~----~~l~~~~~~~~~~~~ 541 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL----LQLEDKEEESRICRA 541 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHH----CCCSCHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHH----hcccccchhhHHHHH
Confidence 0 1111111122222333332221 1111111110 012221111000000
Q ss_pred --HHHHHHh----------------------hhHHHHHhhc----------------cccccccccccccCCcHHHHHHH
Q 005858 298 --VYASILR----------------------KELPKLLALS----------------SRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 298 --~y~~~l~----------------------~~~~~l~~~~----------------~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
.|...+. .......... ........-....++|+..|..+
T Consensus 542 l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~l 621 (936)
T 4a2w_A 542 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCI 621 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 0000000 0000000000 00000000011248899999999
Q ss_pred HHHHH--hCCCeEEEEecCchHHHHHHHHHHhC------------CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhh
Q 005858 338 LKKLY--NSGHRVLLFAQMTQTLDILQDFLELR------------KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403 (673)
Q Consensus 338 l~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~ 403 (673)
|.... ..++|+||||+++.+++.|.++|... |..+..++|+++..+|.+++++|+.+
T Consensus 622 L~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~--------- 692 (936)
T 4a2w_A 622 LDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--------- 692 (936)
T ss_dssp HHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------------------
T ss_pred HHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhcc---------
Confidence 98764 56799999999999999999999976 56666778889999999999999932
Q ss_pred cCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHHHH
Q 005858 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERKLR 483 (673)
Q Consensus 404 ~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K~~ 483 (673)
+...+|++|+++|+|||++.|++||+||+||||..+.||+|| |+.+++.+|.|++.+|++++.+ ....|..
T Consensus 693 ----g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~ 763 (936)
T 4a2w_A 693 ----KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEE 763 (936)
T ss_dssp -----CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHH
T ss_pred ----CCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHH
Confidence 333478999999999999999999999999999999999999 4557888999999999999866 6666777
Q ss_pred HHhHhcC
Q 005858 484 LSHNVVG 490 (673)
Q Consensus 484 l~~~vi~ 490 (673)
++..++.
T Consensus 764 ~~~~~i~ 770 (936)
T 4a2w_A 764 MMNKAVE 770 (936)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 11
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4e-36 Score=307.70 Aligned_cols=223 Identities=26% Similarity=0.399 Sum_probs=166.4
Q ss_pred HhhhhhhhhhhcCCccCCCccc------ccHHHHHHHHHHHhhhHHHH---------------Hhhcccccccccccc--
Q 005858 269 MLRRTKQKLVECGHLMLPPLTE------ITVLQKKVYASILRKELPKL---------------LALSSRTANHQSLQN-- 325 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e------~~~~Q~~~y~~~l~~~~~~l---------------~~~~~~~~~~~~l~~-- 325 (673)
-+||+|.++.. .|||+.+ +++.|+.+|+.++......+ +......++||.+..
T Consensus 13 ~~rr~k~~v~~----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~ 88 (271)
T 1z5z_A 13 GLVPRGSHMAS----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 88 (271)
T ss_dssp -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred cccccHHHHHh----hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 58999999876 5999764 78899999998876532211 112234566666542
Q ss_pred ----ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC-CCcEEEEeCCcCHHHHHHHHHhhccchhHhhh
Q 005858 326 ----TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR-KYSYERLDGSIRAEERFAAIRHFSVQSAIERL 400 (673)
Q Consensus 326 ----~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~-g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~ 400 (673)
..|+|+..|.+++..+...++|+||||+++.+++.|..+|... |+++.+++|+++.++|.+++++|+++
T Consensus 89 ~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~------ 162 (271)
T 1z5z_A 89 EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN------ 162 (271)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHC------
T ss_pred ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCC------
Confidence 3689999999999999889999999999999999999999885 99999999999999999999999944
Q ss_pred hhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 401 YSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 401 ~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
+...|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+||+|++++..
T Consensus 163 ------~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~ 236 (271)
T 1z5z_A 163 ------PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 236 (271)
T ss_dssp ------TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred ------CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCcccchhhhhhcccChHHHHHH
Q 005858 481 KLRLSHNVVGDDVVDREVKERTAVETDDLRSI 512 (673)
Q Consensus 481 K~~l~~~vi~~~~~~~~~~~~~~~~~~dl~~~ 512 (673)
|..+++.+++++.. ....++.+||..+
T Consensus 237 K~~l~~~~~~~~~~-----~~~~~~~~~l~~l 263 (271)
T 1z5z_A 237 KRSLFKDIISSGDS-----WITELSTEELRKV 263 (271)
T ss_dssp CHHHHTTGGGGTTH-----HHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCch-----hhhcCCHHHHHHH
Confidence 99999999986532 2346788999887
No 12
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=332.27 Aligned_cols=414 Identities=16% Similarity=0.184 Sum_probs=244.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEEECc-ccHHHH-HHHHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVLCPL-SVTDGW-VSEMAKF 108 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV~P~-sll~~W-~~E~~k~ 108 (673)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..+...+ ...+++|||||. +++.|| .+++.++
T Consensus 5 ~~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp --CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 47799999999998876 57899999999999999988886654332 223679999997 588999 9999999
Q ss_pred CCC-CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--------ccccCCCccEEEEcCC
Q 005858 109 TPK-LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--------GFLSQIPWCYTIIDEA 179 (673)
Q Consensus 109 ~p~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--------~~l~~~~~~~vIvDEa 179 (673)
++. +.+..++|+.......... . ...+++|+||+.+.... ..+....|++||||||
T Consensus 81 ~~~~~~v~~~~g~~~~~~~~~~~-~--------------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEa 145 (699)
T 4gl2_A 81 LKKWYRVIGLSGDTQLKISFPEV-V--------------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 145 (699)
T ss_dssp HTTTSCEEEEC----CCCCHHHH-H--------------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESG
T ss_pred cCcCceEEEEeCCcchhhHHHhh-h--------------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECc
Confidence 976 8898898876433221111 1 13699999999998643 2345567999999999
Q ss_pred ccccCcc---cHHHHHHHhhc-------------CCCcEEEEecCCCCCCH-------HHHHHHHHHhCCCCCC----Ch
Q 005858 180 QRLKNPS---SVLYNVLREHF-------------LMPRRLLMTGTPIQNNL-------SELWALMHFCMPSVFG----TL 232 (673)
Q Consensus 180 H~~KN~~---s~~~~~l~~~~-------------~~~~rllLTGTPi~N~~-------~El~~ll~~l~p~~~~----~~ 232 (673)
|++.+.. ......+...+ +.+++++|||||..++. .++..++..+.+.... ..
T Consensus 146 H~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~ 225 (699)
T 4gl2_A 146 HHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENL 225 (699)
T ss_dssp GGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTH
T ss_pred cccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCch
Confidence 9985532 11222222111 55779999999998733 4455566667663222 12
Q ss_pred HHHHHHhhhhccCC---CcchhhhHHHHHHHHHHHHHHHH-----------------hhhhhhhhhhcCCccCCCccccc
Q 005858 233 NQFLSTFKDAVHSS---SAPKRGKIKEQFTSLKGILSAFM-----------------LRRTKQKLVECGHLMLPPLTEIT 292 (673)
Q Consensus 233 ~~f~~~f~~~~~~~---~~~~~~~~~~~~~~L~~~l~~~~-----------------lrr~k~~v~~~~~~~lp~~~e~~ 292 (673)
..+...+..+.... ...........+..+...+..++ ....+...... ... ....
T Consensus 226 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~-~~~~ 300 (699)
T 4gl2_A 226 DQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEG----NRK-ERVC 300 (699)
T ss_dssp HHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHT----CTT-THHH
T ss_pred HHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhh----hhh-hHHH
Confidence 23333332221110 00011111122222222222221 00000000000 000 0000
Q ss_pred HHHHHHHHHHH---------------hhhHHHHHhhccc-----------c------------------ccccccccccC
Q 005858 293 VLQKKVYASIL---------------RKELPKLLALSSR-----------T------------------ANHQSLQNTAS 328 (673)
Q Consensus 293 ~~Q~~~y~~~l---------------~~~~~~l~~~~~~-----------~------------------~~~~~l~~~~s 328 (673)
..+...|...+ ...+......... . ..........+
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 380 (699)
T 4gl2_A 301 AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYEN 380 (699)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00111111000 0000000000000 0 00000001145
Q ss_pred CcHHHHHHHHHHHHhC---CCeEEEEecCchHHHHHHHHHHhC------CCcEEEEeCC--------cCHHHHHHHHHhh
Q 005858 329 GKLVVLDLLLKKLYNS---GHRVLLFAQMTQTLDILQDFLELR------KYSYERLDGS--------IRAEERFAAIRHF 391 (673)
Q Consensus 329 ~Kl~~l~~ll~~~~~~---g~kvlIFsq~~~~ld~l~~~L~~~------g~~~~~i~G~--------~~~~~R~~~i~~F 391 (673)
.|+..|..+|...... +.++||||++..+++.|.++|... |+++..++|+ ++..+|.+++++|
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F 460 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 460 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence 6777777777764432 789999999999999999999987 8999999999 9999999999999
Q ss_pred ccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHH
Q 005858 392 SVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVE 471 (673)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiE 471 (673)
+ .+...+|++|.++|+|||++.++.||+||+||||..+.||+||++|.| ..++.+...++.+
T Consensus 461 ~--------------~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 461 R--------------TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGV 522 (699)
T ss_dssp C--------------C---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCS
T ss_pred h--------------cCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchH
Confidence 8 334456889999999999999999999999999999999999986655 4455556666655
Q ss_pred HHHHHHHHHHHHHHhHhc
Q 005858 472 EVIMRRAERKLRLSHNVV 489 (673)
Q Consensus 472 e~i~~~~~~K~~l~~~vi 489 (673)
...+.....+..++...+
T Consensus 523 ~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 523 IERETVNDFREKMMYKAI 540 (699)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.1e-33 Score=312.64 Aligned_cols=344 Identities=11% Similarity=0.093 Sum_probs=237.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH--CC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF--TP 110 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~--~p 110 (673)
..+|+|||.+++.+++.. .+++|+++||+|||++++.++......+ .+++|||||. .++.||.++|.+| .+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHHH----SEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 458999999999998875 6899999999999999988776654332 2479999997 7889999999998 56
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHH
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLY 190 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~ 190 (673)
...+..+.|....... .....+++|+||+.+...... .-..|++||+||||++.+. ...
T Consensus 185 ~~~v~~~~~~~~~~~~------------------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~ 243 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK------------------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SIS 243 (510)
T ss_dssp GGGEEECGGGCCTTGG------------------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHH
T ss_pred ccceEEEecCCccccc------------------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHH
Confidence 6677777665432110 123579999999998776332 2236899999999999873 233
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHh
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l 270 (673)
..+.....+.++++||||| .+...+++.+..++.|..+.... .. .... ..+.++.+
T Consensus 244 ~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~------~~l~~~~~ 299 (510)
T 2oca_A 244 SIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVTT---------------SK--LMED------GQVTELKI 299 (510)
T ss_dssp HHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCCC---------------C-----------------CCEE
T ss_pred HHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeCH---------------HH--HhhC------CcCCCceE
Confidence 3444422667899999999 56666778877777664432100 00 0000 00111000
Q ss_pred hhhhhhhhhcCCccCCCcccccHHHH-----HHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC-
Q 005858 271 RRTKQKLVECGHLMLPPLTEITVLQK-----KVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS- 344 (673)
Q Consensus 271 rr~k~~v~~~~~~~lp~~~e~~~~Q~-----~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~- 344 (673)
... ...+..... ..|.... ..+. ....|...+..++......
T Consensus 300 ~~~--------------~~~~~~~~~~~~~~~~~~~~~----~~~~--------------~~~~~~~~l~~~l~~~~~~~ 347 (510)
T 2oca_A 300 NSI--------------FLRYPDEFTTKLKGKTYQEEI----KIIT--------------GLSKRNKWIAKLAIKLAQKD 347 (510)
T ss_dssp EEE--------------EEECCHHHHHHHTTCCHHHHH----HHHH--------------TCHHHHHHHHHHHHHHHTTT
T ss_pred EEE--------------eecCChHHhccccccchHHHH----HHHh--------------ccHHHHHHHHHHHHHHHhcC
Confidence 000 001111111 0111100 0000 0113344555666665544
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccC
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLN 424 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiN 424 (673)
+.++|||+. ...++.+.+.|...+.++..++|+++.++|.++++.|+ ++...|+|+++.++++|+|
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~-------------~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAE-------------NGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHH-------------HCCSCEEEEEHHHHHHSCC
T ss_pred CCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHh-------------CCCCCEEEEEcChhhcccc
Confidence 556677777 88888899999999889999999999999999999998 3455555444499999999
Q ss_pred CCCCCeeEeeCCCCCcchHHHHhHhhhccCCcC-eEEEEEEecCCCHHHHH
Q 005858 425 LVAADTVIFYEQDWNPQVDKQALQRAHRIGQMN-HVLSINLVTEHTVEEVI 474 (673)
Q Consensus 425 L~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~Vy~lv~~~TiEe~i 474 (673)
++.+++||+++++|++..+.|++||++|.|+.+ .|.||.++...++.+.+
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 999999999999999999999999999999987 89999999877644433
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.6e-33 Score=322.18 Aligned_cols=398 Identities=18% Similarity=0.189 Sum_probs=216.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC--CCCCEEEEECc-ccHHHHHHHHHHHCC-
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM--SPGPFLVLCPL-SVTDGWVSEMAKFTP- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~k~~p- 110 (673)
.+|+|||.+++.+++. +.++|++++||+|||++++.++........ ..+++|||+|. +++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 6799999999999875 579999999999999999888876544332 22679999997 899999999999986
Q ss_pred -CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cc-cCCCccEEEEcCCccccCcc
Q 005858 111 -KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FL-SQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 111 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l-~~~~~~~vIvDEaH~~KN~~ 186 (673)
++++..+.|+.......... . ..++++|+||+.+..... .+ ....|++||+||||++++..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~-~--------------~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQI-V--------------ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHH-H--------------HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC
T ss_pred CCceEEEEeCCccccccHHHh-c--------------cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc
Confidence 67888888865432221111 1 126899999999977543 22 34568999999999998765
Q ss_pred cHHHHHH----Hhhc-----CCCcEEEEecCCCCCC-------HHHHHHHHHHhCCCCCCC---hHHHHHHhh-hhccC-
Q 005858 187 SVLYNVL----REHF-----LMPRRLLMTGTPIQNN-------LSELWALMHFCMPSVFGT---LNQFLSTFK-DAVHS- 245 (673)
Q Consensus 187 s~~~~~l----~~~~-----~~~~rllLTGTPi~N~-------~~El~~ll~~l~p~~~~~---~~~f~~~f~-~~~~~- 245 (673)
.. ...+ ...+ ...++++|||||..++ +..++.++..++...+.. .......|. .+...
T Consensus 153 ~~-~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~ 231 (696)
T 2ykg_A 153 PY-NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 231 (696)
T ss_dssp HH-HHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEE
T ss_pred cH-HHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeE
Confidence 32 2221 1111 4577899999998654 344555555554433222 111222221 11000
Q ss_pred --CCcchhhhHHHHH----HHHHHHHHH-----------------------HHhhhhhhhhhhcCCccCCCcccccHHHH
Q 005858 246 --SSAPKRGKIKEQF----TSLKGILSA-----------------------FMLRRTKQKLVECGHLMLPPLTEITVLQK 296 (673)
Q Consensus 246 --~~~~~~~~~~~~~----~~L~~~l~~-----------------------~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~ 296 (673)
............+ ..+..+... ++.++.+... ...+|.+.+-.....
T Consensus 232 ~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 307 (696)
T 2ykg_A 232 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACM----VFQMPDKDEESRICK 307 (696)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSC----C------CCHHHHHH
T ss_pred EecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH----HhhcccchhhhHHHH
Confidence 0000001111111 111111111 1111111110 001121111000000
Q ss_pred HHH--HHHHhh----------------------hHHHHHhhccccccc----------ccc------ccccCCcHHHHHH
Q 005858 297 KVY--ASILRK----------------------ELPKLLALSSRTANH----------QSL------QNTASGKLVVLDL 336 (673)
Q Consensus 297 ~~y--~~~l~~----------------------~~~~l~~~~~~~~~~----------~~l------~~~~s~Kl~~l~~ 336 (673)
.++ ...+.. ..............+ ..+ ....+.|+..|..
T Consensus 308 ~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 387 (696)
T 2ykg_A 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 000 000000 000000000000000 000 0024678889999
Q ss_pred HHHHHH--hCCCeEEEEecCchHHHHHHHHHHhCC----CcEEEEeC--------CcCHHHHHHHHHhhccchhHhhhhh
Q 005858 337 LLKKLY--NSGHRVLLFAQMTQTLDILQDFLELRK----YSYERLDG--------SIRAEERFAAIRHFSVQSAIERLYS 402 (673)
Q Consensus 337 ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~g----~~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~~~~~ 402 (673)
++.... ..++++||||++...++.|.++|...| +++..++| +++.++|.+++++|+++
T Consensus 388 ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~-------- 459 (696)
T 2ykg_A 388 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS-------- 459 (696)
T ss_dssp HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------------
T ss_pred HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc--------
Confidence 888764 367899999999999999999999988 89998855 99999999999999831
Q ss_pred hcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHH
Q 005858 403 EAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEV 473 (673)
Q Consensus 403 ~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~ 473 (673)
+.. .+|++|.++|+|||++.+++||+||+|||+..+.||+|| +|. ++..+|.|++.+++++.
T Consensus 460 ----g~~-~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 460 ----GDH-NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -----CC-SCSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred ----CCc-cEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 333 457899999999999999999999999999999999999 884 66788999999887664
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5e-33 Score=317.43 Aligned_cols=350 Identities=14% Similarity=0.148 Sum_probs=210.0
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCC-CCeEEECCCcchHHHHHHHHHHHhhhcC------CCCCCEEEEEC-cccHHHHH-
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLG-VNVLLGDEMGLGKTLQAISFLSYLKFSQ------MSPGPFLVLCP-LSVTDGWV- 102 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~-~~~iLade~GlGKTl~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~~W~- 102 (673)
.....|+|||.+++.+++..+..+ .+++|+++||+|||++++.++..+...+ ...+++||||| .+++.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 345789999999999999877665 4589999999999999999888776543 14567999999 57889999
Q ss_pred HHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc------ccccCCCccEEEE
Q 005858 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ------GFLSQIPWCYTII 176 (673)
Q Consensus 103 ~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~------~~l~~~~~~~vIv 176 (673)
+++..|.+.... +.+. ......+++|+||+.+.... ..+....|++||+
T Consensus 254 ~~~~~~~~~~~~--~~~~-----------------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIi 308 (590)
T 3h1t_A 254 KTFTPFGDARHK--IEGG-----------------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII 308 (590)
T ss_dssp -CCTTTCSSEEE--CCC-------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE
T ss_pred HHHHhcchhhhh--hhcc-----------------------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEE
Confidence 888877654322 2211 12345799999999987642 2344456899999
Q ss_pred cCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHH
Q 005858 177 DEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKE 256 (673)
Q Consensus 177 DEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 256 (673)
||||++.+.....++.+...+...++++|||||..+...+++.++ .+..+.. .+.+...
T Consensus 309 DEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f---~~~~~~~--~~~~~i~---------------- 367 (590)
T 3h1t_A 309 DECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYF---GNPIYTY--SLRQGID---------------- 367 (590)
T ss_dssp SCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS---CSCSEEE--CHHHHHH----------------
T ss_pred ECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHc---CCceEec--CHHHHhh----------------
Confidence 999999876434444444557778899999999988877655543 2211100 0000000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHh------hhHHHHHhhccccccccccccccCCc
Q 005858 257 QFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILR------KELPKLLALSSRTANHQSLQNTASGK 330 (673)
Q Consensus 257 ~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~------~~~~~l~~~~~~~~~~~~l~~~~s~K 330 (673)
...+.++.+.+....+...+ ..+. ..+...+...+. ..+..... ...+
T Consensus 368 -----~~~l~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~r 421 (590)
T 3h1t_A 368 -----DGFLAPYRVHRVISEVDAAG--WRPS-----KGDVDRFGREIPDGEYQTKDFERVIA--------------LKAR 421 (590)
T ss_dssp -----HTSSCCEEEEEEEETTCC------------------------------CCSHHHHHH--------------HHHT
T ss_pred -----CCccCCcEEEEeeeeeeccc--cccc-----cccccccccccccccCCHHHhhhHhc--------------ChHH
Confidence 00111111111111000000 0000 000000000000 00000000 0112
Q ss_pred HHHHHHHHHHHH---hCCCeEEEEecCchHHHHHHHHHHhCCCc--------EEEEeCCcCHHHHHHHHHhhccchhHhh
Q 005858 331 LVVLDLLLKKLY---NSGHRVLLFAQMTQTLDILQDFLELRKYS--------YERLDGSIRAEERFAAIRHFSVQSAIER 399 (673)
Q Consensus 331 l~~l~~ll~~~~---~~g~kvlIFsq~~~~ld~l~~~L~~~g~~--------~~~i~G~~~~~~R~~~i~~F~~~~~~~~ 399 (673)
...+...+..+. ..+.|+||||+....++.+.+.|...+.. +..++|.++. +|.+++++|++.
T Consensus 422 ~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~----- 495 (590)
T 3h1t_A 422 TDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQEL----- 495 (590)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCC-----
Confidence 222222222221 45689999999999999999999765433 7789999763 799999999954
Q ss_pred hhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCC---cCeEEEEEEe
Q 005858 400 LYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ---MNHVLSINLV 465 (673)
Q Consensus 400 ~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ---~k~V~Vy~lv 465 (673)
+....++|+||+++++|||++.+++||+++++|++..+.|++||++|.|+ +..+.||.++
T Consensus 496 ------~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 496 ------ETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp ------TCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred ------CCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 34577899999999999999999999999999999999999999999995 5678888887
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2e-31 Score=288.00 Aligned_cols=330 Identities=17% Similarity=0.209 Sum_probs=225.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---PK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p~ 111 (673)
.|+|||.+++.++.. +.++++.++||+|||++++..+...........++|||||. .++.||.+++.++. |+
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 499999999987765 57899999999999999877766554333344579999997 78899999999986 57
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcccH-
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSSV- 188 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s~- 188 (673)
.++..+.|.......... +. ...++++|+|++.+.... ..+....+++||+||||++.+....
T Consensus 106 ~~~~~~~g~~~~~~~~~~-----~~---------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~ 171 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEV-----LK---------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 171 (391)
T ss_dssp CCEEEECTTSCHHHHHHH-----HH---------HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHH
T ss_pred eEEEEEeCCCCHHHHHHH-----Hh---------cCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchH
Confidence 888888887654332211 11 123689999999987542 2233457899999999998763221
Q ss_pred --HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 189 --LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 189 --~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
....+...-....++++||||-.. ..++.. .++ ..+..
T Consensus 172 ~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~--~~~---------------~~~~~---------------------- 211 (391)
T 1xti_A 172 RDVQEIFRMTPHEKQVMMFSATLSKE-IRPVCR--KFM---------------QDPME---------------------- 211 (391)
T ss_dssp HHHHHHHHTSCSSSEEEEEESSCCST-HHHHHH--HHC---------------SSCEE----------------------
T ss_pred HHHHHHHhhCCCCceEEEEEeeCCHH-HHHHHH--HHc---------------CCCeE----------------------
Confidence 222232212345689999998532 111110 000 00000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+. +........... .+.........|...+..++... .++
T Consensus 212 ---~~-----~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~~l~~~--~~~ 251 (391)
T 1xti_A 212 ---IF-----VDDETKLTLHGL------------------------------QQYYVKLKDNEKNRKLFDLLDVL--EFN 251 (391)
T ss_dssp ---EE-----CCCCCCCCCTTC------------------------------EEEEEECCGGGHHHHHHHHHHHS--CCS
T ss_pred ---EE-----ecCccccCcccc------------------------------eEEEEEcCchhHHHHHHHHHHhc--CCC
Confidence 00 000000000000 00000111234555666666653 678
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
++||||+....++.+.+.|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|+|++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK--------------DFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH--------------TTCCSEEEESCCCSSCBCCT
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh--------------cCCCcEEEECChhhcCCCcc
Confidence 9999999999999999999999999999999999999999999998 33345788999999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
.+++||++++||++..+.|++||++|.|+...+.+ |+... -+..+++....
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~~ 368 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQD 368 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHHH
Confidence 99999999999999999999999999997665544 34432 24444444443
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.1e-31 Score=279.83 Aligned_cols=311 Identities=18% Similarity=0.212 Sum_probs=218.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+++.+++.. +.++++..+||+|||++++..+..+.... ...++|||||. .++.||.+++.++.+ ..
T Consensus 28 ~~~~~Q~~~i~~~~~~---~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLND---EYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHHT---CSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhCC---CCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 6999999999988764 46899999999999999887776654332 34568999997 677999999999875 45
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccccCccc--H
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRLKNPSS--V 188 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~KN~~s--~ 188 (673)
.+..+.|........... ...+++|+||+.+..... .+....+++||+||||.+.+... .
T Consensus 104 ~v~~~~~~~~~~~~~~~~----------------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 167 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKAL----------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKD 167 (367)
T ss_dssp CEEEECTTSCHHHHHHHH----------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHH
T ss_pred eEEEEECCcchHHHHhhc----------------CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHH
Confidence 677777765543322211 026899999999876532 23345689999999999877542 2
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
....+...-...+.+++||||... +..++.-. +....
T Consensus 168 ~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~~~~--------------~~~~~------------------------- 204 (367)
T 1hv8_A 168 VEKILNACNKDKRILLFSATMPRE----ILNLAKKY--------------MGDYS------------------------- 204 (367)
T ss_dssp HHHHHHTSCSSCEEEEECSSCCHH----HHHHHHHH--------------CCSEE-------------------------
T ss_pred HHHHHHhCCCCceEEEEeeccCHH----HHHHHHHH--------------cCCCe-------------------------
Confidence 333333322456779999998421 11111100 00000
Q ss_pred HhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 269 MLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
. + .. ..+... ...........|+..+..++ ...+.++
T Consensus 205 ~-------~-~~---~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~~l---~~~~~~~ 241 (367)
T 1hv8_A 205 F-------I-KA---KINANI-----------------------------EQSYVEVNENERFEALCRLL---KNKEFYG 241 (367)
T ss_dssp E-------E-EC---CSSSSS-----------------------------EEEEEECCGGGHHHHHHHHH---CSTTCCE
T ss_pred E-------E-Ee---cCCCCc-----------------------------eEEEEEeChHHHHHHHHHHH---hcCCCcE
Confidence 0 0 00 000000 00000001123444444444 3678899
Q ss_pred EEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCC
Q 005858 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA 428 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a 428 (673)
||||+....++.+.+.|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|+|++.+
T Consensus 242 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~~~~~vlv~T~~~~~Gid~~~~ 307 (367)
T 1hv8_A 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFK--------------QKKIRILIATDVMSRGIDVNDL 307 (367)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHH--------------TTSSSEEEECTTHHHHCCCSCC
T ss_pred EEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH--------------cCCCeEEEECChhhcCCCcccC
Confidence 99999999999999999999999999999999999999999998 3334567889999999999999
Q ss_pred CeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 429 DTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 429 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++||++++||++..+.|++||++|.|+...+.+ ++...
T Consensus 308 ~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~ 345 (367)
T 1hv8_A 308 NCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRR 345 (367)
T ss_dssp SEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTT
T ss_pred CEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHH
Confidence 999999999999999999999999998765544 45554
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=4.5e-30 Score=278.47 Aligned_cols=316 Identities=18% Similarity=0.199 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+++.++.. +.++++..+||+|||++++..+...........++|||||. .++.||.+++.++.+ +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 599999999998876 47899999999999998877665554333344569999997 778999999999985 46
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc-HH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS-VL 189 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s-~~ 189 (673)
.+..+.|.......... ....++++|+|++.+.... .......+++||+||||++.+... ..
T Consensus 119 ~~~~~~g~~~~~~~~~~---------------~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~ 183 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR---------------LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTI 183 (400)
T ss_dssp CEEEECSSSCHHHHHHH---------------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHH
T ss_pred eEEEEeCCcchHHHHHH---------------hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHH
Confidence 77777776654332211 1235789999999986542 223345689999999999876431 12
Q ss_pred HHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 190 YNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 190 ~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
...+...+ .....+++|||+-. .+...+. .+
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~----~~~~~~~--------------------------------------------~~ 215 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPL----TVKEFMV--------------------------------------------KH 215 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCH----HHHHHHH--------------------------------------------HH
T ss_pred HHHHHHhCCcCceEEEEEecCCH----HHHHHHH--------------------------------------------HH
Confidence 22232223 34567999999631 1111000 00
Q ss_pred HhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 269 MLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
+.....-.+.. ....+... +.........|+..+..++.. ..+.++
T Consensus 216 ~~~~~~~~~~~--~~~~~~~~------------------------------~~~~~~~~~~k~~~l~~~~~~--~~~~~~ 261 (400)
T 1s2m_A 216 LHKPYEINLME--ELTLKGIT------------------------------QYYAFVEERQKLHCLNTLFSK--LQINQA 261 (400)
T ss_dssp CSSCEEESCCS--SCBCTTEE------------------------------EEEEECCGGGHHHHHHHHHHH--SCCSEE
T ss_pred cCCCeEEEecc--ccccCCce------------------------------eEEEEechhhHHHHHHHHHhh--cCCCcE
Confidence 00000000000 00000000 000001124556666666665 356799
Q ss_pred EEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCC
Q 005858 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA 428 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a 428 (673)
||||+....++.+.+.|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|+|++.+
T Consensus 262 lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~g~~~vLv~T~~~~~Gidip~~ 327 (400)
T 1s2m_A 262 IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR--------------QGKVRTLVCSDLLTRGIDIQAV 327 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH--------------TTSSSEEEESSCSSSSCCCTTE
T ss_pred EEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh--------------cCCCcEEEEcCccccCCCccCC
Confidence 99999999999999999999999999999999999999999998 3334477899999999999999
Q ss_pred CeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 429 DTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 429 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++||++|+||++..+.|++||++|.|+... ++.|+...
T Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~ 365 (400)
T 1s2m_A 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN 365 (400)
T ss_dssp EEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG
T ss_pred CEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccc
Confidence 999999999999999999999999997644 45556654
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3e-30 Score=280.94 Aligned_cols=318 Identities=18% Similarity=0.221 Sum_probs=219.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+++.+++. +.++++..+||+|||++++..+...........++|||||. .++.||.+++.++.. +.
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 499999999998765 47899999999999999887776554333445679999997 688999999999874 45
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc--H
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS--V 188 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s--~ 188 (673)
.+..+.|............ ...+++|+|++.+.... ..+....+++||+||||++.+... .
T Consensus 135 ~~~~~~g~~~~~~~~~~~~---------------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRKLD---------------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp CEEEECTTSCHHHHHHHHH---------------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred EEEEEECCCCHHHHHHHhh---------------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHH
Confidence 6666666655443322211 12589999999886542 234445689999999999876542 2
Q ss_pred HHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 189 LYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
....+...-...+.+++||||-. ++..++... +..+..
T Consensus 200 ~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~------------------------ 237 (410)
T 2j0s_A 200 IYDVYRYLPPATQVVLISATLPH----EILEMTNKF--------------MTDPIR------------------------ 237 (410)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGT--------------CSSCEE------------------------
T ss_pred HHHHHHhCccCceEEEEEcCCCH----HHHHHHHHH--------------cCCCEE------------------------
Confidence 33333321134678999999732 111100000 000000
Q ss_pred HhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 269 MLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
+...... ...+... ...........|...+..++... .+.++
T Consensus 238 -~~~~~~~------~~~~~~~-----------------------------~~~~~~~~~~~k~~~l~~~~~~~--~~~~~ 279 (410)
T 2j0s_A 238 -ILVKRDE------LTLEGIK-----------------------------QFFVAVEREEWKFDTLCDLYDTL--TITQA 279 (410)
T ss_dssp -ECCCGGG------CSCTTEE-----------------------------EEEEEESSTTHHHHHHHHHHHHH--TSSEE
T ss_pred -EEecCcc------ccCCCce-----------------------------EEEEEeCcHHhHHHHHHHHHHhc--CCCcE
Confidence 0000000 0000000 00000011123566666666654 45699
Q ss_pred EEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCC
Q 005858 349 LLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAA 428 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a 428 (673)
||||+....++.+.+.|...|+.+..++|+++..+|..+++.|++ + ...+|++|+++++|+|++.+
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-------------g-~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-------------G-ASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-------------T-SSCEEEECGGGSSSCCCTTE
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-------------C-CCCEEEECChhhCcCCcccC
Confidence 999999999999999999999999999999999999999999982 2 33477899999999999999
Q ss_pred CeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 429 DTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 429 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++||+||+||++..+.|++||++|.|+.-. ++.|+...
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 383 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND 383 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG
T ss_pred CEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHH
Confidence 999999999999999999999999997644 44455544
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=7.2e-30 Score=269.75 Aligned_cols=313 Identities=18% Similarity=0.216 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~ 111 (673)
..|+|||.+++.++.. +.++++..+||+|||++++..+... ..++|||||. .++.||.+++.++.+ +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 3589999999988775 5789999999999999887776543 3568999997 788999999999874 4
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS-- 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s-- 187 (673)
..+..+.|.......... + ..++++|+|++.+.... ..+....|++||+||||++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~-----~-----------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINR-----V-----------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp CCEEEECTTSCHHHHHHH-----H-----------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred CcEEEEECCcchHHHHhh-----c-----------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 677777776544332211 1 12689999999987642 233345689999999999865432
Q ss_pred HHHHHHHhhcCC-CcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLM-PRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 188 ~~~~~l~~~~~~-~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
.....+.. ... ...+++||||-. ++...+.-. +.....
T Consensus 149 ~~~~~~~~-~~~~~~~~~~SAT~~~----~~~~~~~~~--------------~~~~~~---------------------- 187 (337)
T 2z0m_A 149 DIKIILAQ-TSNRKITGLFSATIPE----EIRKVVKDF--------------ITNYEE---------------------- 187 (337)
T ss_dssp HHHHHHHH-CTTCSEEEEEESCCCH----HHHHHHHHH--------------SCSCEE----------------------
T ss_pred HHHHHHhh-CCcccEEEEEeCcCCH----HHHHHHHHh--------------cCCcee----------------------
Confidence 23333333 443 445678999832 111111100 000000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+.. ....+... + .......... .....+. ...+.
T Consensus 188 ----------~~~--~~~~~~~~------------------------------~-~~~~~~~~~~-~~~~~~~--~~~~~ 221 (337)
T 2z0m_A 188 ----------IEA--CIGLANVE------------------------------H-KFVHVKDDWR-SKVQALR--ENKDK 221 (337)
T ss_dssp ----------EEC--SGGGGGEE------------------------------E-EEEECSSSSH-HHHHHHH--TCCCS
T ss_pred ----------eec--ccccCCce------------------------------E-EEEEeChHHH-HHHHHHH--hCCCC
Confidence 000 00000000 0 0000000000 1112222 14678
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
++||||+....++.+.+.|. .+..++|+++..+|.++++.|+ .+...+|++|.++++|+|++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~--------------~~~~~vlv~T~~~~~Gid~~ 283 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR--------------EGEYDMLITTDVASRGLDIP 283 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH--------------TTSCSEEEECHHHHTTCCCC
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH--------------cCCCcEEEEcCccccCCCcc
Confidence 99999999999999988876 6789999999999999999998 33345788899999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
.+++||++++||++..+.|++||++|.|+...+.+|.. .+..+.+.+.+.+.
T Consensus 284 ~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999999888888776 55556666555443
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=276.59 Aligned_cols=320 Identities=18% Similarity=0.228 Sum_probs=209.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--CC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--PK 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p~ 111 (673)
..|+|||.+++..++. +.++++..+||+|||++++..+...........++|||||. .+..||.+++.++. ..
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3699999999987765 57899999999999999776666554444345679999997 67899999999986 34
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--c
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS--S 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~--s 187 (673)
..+....|........... ....++++|+|++.+.... ..+....+++||+||||++.+.. .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~ 202 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKL--------------QMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKD 202 (414)
T ss_dssp CCEEECCCCTTHHHHHHHH--------------TTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHH
T ss_pred ceEEEEECCcchHHHHHHH--------------hcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHH
Confidence 5666666655443332211 2235799999999886543 23444568999999999986543 3
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
.....+.......+.++|||||-. ++..+..... ..+..
T Consensus 203 ~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~--------------~~~~~----------------------- 241 (414)
T 3eiq_A 203 QIYDIFQKLNSNTQVVLLSATMPS----DVLEVTKKFM--------------RDPIR----------------------- 241 (414)
T ss_dssp HHHHHHTTSCTTCEEEEECSCCCH----HHHHHHTTTC--------------SSCEE-----------------------
T ss_pred HHHHHHHhCCCCCeEEEEEEecCH----HHHHHHHHHc--------------CCCEE-----------------------
Confidence 344444432245567999999831 1111110000 00000
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCe
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHR 347 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~k 347 (673)
+. ........+.. ............|+..+..++... .+.+
T Consensus 242 --~~------~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 282 (414)
T 3eiq_A 242 --IL------VKKEELTLEGI-----------------------------RQFYINVEREEWKLDTLCDLYETL--TITQ 282 (414)
T ss_dssp --EC------CCCCCCCTTSC-----------------------------CEEEEECSSSTTHHHHHHHHHHSS--CCSS
T ss_pred --EE------ecCCccCCCCc-----------------------------eEEEEEeChHHhHHHHHHHHHHhC--CCCc
Confidence 00 00000000000 000000111234666666666553 5679
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCC
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVA 427 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~ 427 (673)
+||||+....++.+.+.|...++.+..++|+++.++|..+++.|+ .+...+|++|.++++|||++.
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~--------------~g~~~vlv~T~~~~~Gidip~ 348 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR--------------SGSSRVLITTDLLARGIDVQQ 348 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS--------------CC---CEEECSSCC--CCGGG
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH--------------cCCCcEEEECCccccCCCccC
Confidence 999999999999999999999999999999999999999999998 334457899999999999999
Q ss_pred CCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 428 ADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 428 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
+++||++|++||+..+.|++||++|.|+.. .+|.|++..
T Consensus 349 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 349 VSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp CSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 999999999999999999999999999764 345566665
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=4.1e-30 Score=277.81 Aligned_cols=317 Identities=17% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~ 111 (673)
.+|+|||.+++.++.. +.++++..+||+|||++++..+...........++|||||. .++.||.+++.++.+ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999998876 47899999999999998665554443333345679999997 788999999999874 4
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--c
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS--S 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~--s 187 (673)
..+..+.|.......... .. .++++|+|++.+.... ..+....+++||+||||++.+.. .
T Consensus 118 ~~~~~~~g~~~~~~~~~~--~~--------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~ 181 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG--LR--------------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKE 181 (394)
T ss_dssp CCEEEECSSCCHHHHHHH--HH--------------HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHH
T ss_pred eeEEEEeCCCchHHHHhh--cC--------------CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHH
Confidence 677777776554332211 11 1589999999986543 23444578999999999975432 2
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSA 267 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 267 (673)
.....+...-...+++++||||-. ++..+.... +..+..
T Consensus 182 ~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~----------------------- 220 (394)
T 1fuu_A 182 QIYQIFTLLPPTTQVVLLSATMPN----DVLEVTTKF--------------MRNPVR----------------------- 220 (394)
T ss_dssp HHHHHHHHSCTTCEEEEECSSCCH----HHHHHHHHH--------------CCSCEE-----------------------
T ss_pred HHHHHHHhCCCCceEEEEEEecCH----HHHHHHHHh--------------cCCCeE-----------------------
Confidence 333444332244568999999842 111111100 000000
Q ss_pred HHhhhhhhhhhhcCCccCCCcccccHHH-HHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 268 FMLRRTKQKLVECGHLMLPPLTEITVLQ-KKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 268 ~~lrr~k~~v~~~~~~~lp~~~e~~~~Q-~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+. ... .+..... ...|... .....|...+..++... .+.
T Consensus 221 --~~-------------~~~-~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~--~~~ 260 (394)
T 1fuu_A 221 --IL-------------VKK-DELTLEGIKQFYVNV----------------------EEEEYKYECLTDLYDSI--SVT 260 (394)
T ss_dssp --EE-------------ECC------------------------------------------------------------
T ss_pred --EE-------------ecC-ccccCCCceEEEEEc----------------------CchhhHHHHHHHHHhcC--CCC
Confidence 00 000 0000000 0000000 00011333444555442 457
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
++||||+....++.+.+.|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|+|++
T Consensus 261 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 261 QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR--------------SGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH--------------CCCCcEEEECChhhcCCCcc
Confidence 9999999999999999999999999999999999999999999998 33445788999999999999
Q ss_pred CCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 427 AADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 427 ~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
.+++||++++||++..+.|++||++|.|+...+.+ |+...
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 99999999999999999999999999997654443 44443
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=8.2e-29 Score=267.37 Aligned_cols=313 Identities=15% Similarity=0.162 Sum_probs=211.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~ 111 (673)
..|+|||.+++..++.. .+.++++..+||+|||++++..+..........+++|||||. .++.||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 46999999999887653 237899999999999999887766554444445679999997 578999999999873 4
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCccc--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPSS-- 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~s-- 187 (673)
..+....+..... .....++++|+|++.+.... ..+....+++||+||||++.+...
T Consensus 104 ~~~~~~~~~~~~~-------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 164 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLG 164 (395)
T ss_dssp CCEEEESTTSSCT-------------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHH
T ss_pred eeEEEEecCchhh-------------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccH
Confidence 4555555443211 12335799999999986543 233445689999999999865222
Q ss_pred HHHHHHHhhc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 188 ~~~~~l~~~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
.....+...+ ...+.+++||||-. .+..+...+.+. ...
T Consensus 165 ~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------~~~---------------------- 204 (395)
T 3pey_A 165 DQCIRVKRFLPKDTQLVLFSATFAD----AVRQYAKKIVPN--------------ANT---------------------- 204 (395)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSCS--------------CEE----------------------
T ss_pred HHHHHHHHhCCCCcEEEEEEecCCH----HHHHHHHHhCCC--------------CeE----------------------
Confidence 2222333323 33567999999831 111111111000 000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+...... ...+..... .........|...+..++.. ..+.
T Consensus 205 ---~~~~~~~------~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~--~~~~ 244 (395)
T 3pey_A 205 ---LELQTNE------VNVDAIKQL-----------------------------YMDCKNEADKFDVLTELYGL--MTIG 244 (395)
T ss_dssp ---ECCCGGG------CSCTTEEEE-----------------------------EEECSSHHHHHHHHHHHHTT--TTSS
T ss_pred ---EEccccc------cccccccEE-----------------------------EEEcCchHHHHHHHHHHHHh--ccCC
Confidence 0000000 000000000 00000112233444444443 2567
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
++||||+....++.+.+.|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|+|++
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR--------------EGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH--------------TTSCCEEEECGGGSSSCCCT
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH--------------CCCCCEEEECChhhcCCCcc
Confidence 9999999999999999999999999999999999999999999998 33344689999999999999
Q ss_pred CCCeeEeeCCCC------CcchHHHHhHhhhccCCcCeEEEE
Q 005858 427 AADTVIFYEQDW------NPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 427 ~a~~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
++++||++|+|| ++..+.|++||++|.|+...+.++
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 999999999999 999999999999999976554443
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=2e-28 Score=268.76 Aligned_cols=312 Identities=17% Similarity=0.194 Sum_probs=212.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHH-HhhhcC----CCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLS-YLKFSQ----MSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~-~l~~~~----~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.|+|+|.+++..+.. +.++++..+||+|||++.+..+. .+.... .....+|||||. .+..||.+++.++.
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 599999999987754 58999999999999998765443 333221 123468999997 68899999999988
Q ss_pred C--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 110 P--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
. .+++..+.|.......... ...+++++|+|++.+.... ..+.-..+++||+||||++.+.
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~---------------l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNEC---------------ITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHH---------------HTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTST
T ss_pred ccCCcEEEEEECCCCHHHHHHH---------------hhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhcc
Confidence 4 3566666665544332211 1124799999999986543 2333456899999999998764
Q ss_pred c--cHHHHHHHhh--cCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHH
Q 005858 186 S--SVLYNVLREH--FLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSL 261 (673)
Q Consensus 186 ~--s~~~~~l~~~--~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L 261 (673)
. ....+.+... ......+++|||+- .++..+.. .|...
T Consensus 219 gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~---------------~~l~~------------------- 260 (434)
T 2db3_A 219 GFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAG---------------EFLKN------------------- 260 (434)
T ss_dssp TTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHH---------------TTCSS-------------------
T ss_pred CcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHH---------------HhccC-------------------
Confidence 3 2233333321 23456899999973 11111111 00000
Q ss_pred HHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHH
Q 005858 262 KGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKL 341 (673)
Q Consensus 262 ~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~ 341 (673)
+..+. .. .. . ...+. ..+.........|...|..++..
T Consensus 261 -----~~~i~-~~-~~-~---~~~~~------------------------------i~~~~~~~~~~~k~~~l~~~l~~- 298 (434)
T 2db3_A 261 -----YVFVA-IG-IV-G---GACSD------------------------------VKQTIYEVNKYAKRSKLIEILSE- 298 (434)
T ss_dssp -----CEEEE-ES-ST-T---CCCTT------------------------------EEEEEEECCGGGHHHHHHHHHHH-
T ss_pred -----CEEEE-ec-cc-c---ccccc------------------------------cceEEEEeCcHHHHHHHHHHHHh-
Confidence 00000 00 00 0 00000 00000001123355555555543
Q ss_pred HhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc
Q 005858 342 YNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421 (673)
Q Consensus 342 ~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~ 421 (673)
.+.++||||+....++.+.+.|...|+++..++|+++..+|..+++.|+ .+...+|++|+++++
T Consensus 299 --~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~--------------~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 299 --QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK--------------NGSMKVLIATSVASR 362 (434)
T ss_dssp --CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHH--------------TSSCSEEEECGGGTS
T ss_pred --CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHH--------------cCCCcEEEEchhhhC
Confidence 4556999999999999999999999999999999999999999999998 333457889999999
Q ss_pred ccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 422 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 422 GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
|||++.+++||+||+|+++..+.||+||++|.|+.-.+.++
T Consensus 363 GlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp SCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99999999999999999999999999999999986544443
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=265.83 Aligned_cols=318 Identities=18% Similarity=0.212 Sum_probs=211.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHH-HHhhhcCC-----------------CCCCEEEEECc-
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFL-SYLKFSQM-----------------SPGPFLVLCPL- 95 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i-~~l~~~~~-----------------~~~~~LIV~P~- 95 (673)
..|+|+|.+++..+.. +.++++..+||+|||++++..+ ..+..... ....+|||+|.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 4799999999986654 5889999999999999766544 33322211 11358999997
Q ss_pred ccHHHHHHHHHHHC--CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCc
Q 005858 96 SVTDGWVSEMAKFT--PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPW 171 (673)
Q Consensus 96 sll~~W~~E~~k~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~ 171 (673)
.++.||.+++.++. .++++..+.|.......... + ...++++|+|++.+.... ..+....+
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~----------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD-----L----------ERGCHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH-----H----------TTCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH-----h----------hCCCCEEEEChHHHHHHHHcCCcChhhC
Confidence 78899999999887 35677777776554433221 1 124689999999986543 22334567
Q ss_pred cEEEEcCCccccCcc-cHHHHHHHhhc--C---CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccC
Q 005858 172 CYTIIDEAQRLKNPS-SVLYNVLREHF--L---MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHS 245 (673)
Q Consensus 172 ~~vIvDEaH~~KN~~-s~~~~~l~~~~--~---~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~ 245 (673)
++||+||||++.... ......+.... . ....+++||||-. ++..++..... .+.
T Consensus 177 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~--------------~~~-- 236 (417)
T 2i4i_A 177 KYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARDFLD--------------EYI-- 236 (417)
T ss_dssp CEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHHHCS--------------SCE--
T ss_pred cEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHHHcC--------------CCE--
Confidence 999999999976533 12222222211 1 2457999999831 11111111000 000
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccccc
Q 005858 246 SSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325 (673)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~ 325 (673)
.+ ..... . ..++. ..+.....
T Consensus 237 -----------------------~~-~~~~~-----~-~~~~~-----------------------------i~~~~~~~ 257 (417)
T 2i4i_A 237 -----------------------FL-AVGRV-----G-STSEN-----------------------------ITQKVVWV 257 (417)
T ss_dssp -----------------------EE-EEC----------CCSS-----------------------------EEEEEEEC
T ss_pred -----------------------EE-EeCCC-----C-CCccC-----------------------------ceEEEEEe
Confidence 00 00000 0 00000 00000011
Q ss_pred ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcC
Q 005858 326 TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 326 ~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~ 405 (673)
....|...+..++... ..+.++||||+....++.+.++|...|+.+..++|+++.++|..+++.|++
T Consensus 258 ~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~------------ 324 (417)
T 2i4i_A 258 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS------------ 324 (417)
T ss_dssp CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH------------
T ss_pred ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc------------
Confidence 1234555566665543 357899999999999999999999999999999999999999999999982
Q ss_pred CCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
+ ...+|++|+++++|||++.+++||+||+||++..+.|++||++|.|+.- .++.|+..
T Consensus 325 -g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~ 382 (417)
T 2i4i_A 325 -G-KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNE 382 (417)
T ss_dssp -T-SSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECG
T ss_pred -C-CCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEcc
Confidence 2 3347889999999999999999999999999999999999999999764 44445554
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=1.1e-27 Score=260.35 Aligned_cols=330 Identities=16% Similarity=0.169 Sum_probs=219.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---P 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p 110 (673)
..|+|+|.+++..++.. .+.++++..+||+|||++++..+............+|||||. .++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999877652 347899999999999999866555443344444569999997 57799988888775 5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccC--c
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKN--P 185 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN--~ 185 (673)
...+....+..... .......+++|+|++.+.... ..+.-..+++||+||||++.. .
T Consensus 124 ~~~~~~~~~~~~~~------------------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 185 (412)
T 3fht_A 124 ELKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185 (412)
T ss_dssp TCCEEEECTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT
T ss_pred cceEEEeecCcchh------------------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC
Confidence 67777666544211 112345789999999997643 333345789999999998754 2
Q ss_pred ccHHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHH
Q 005858 186 SSVLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGI 264 (673)
Q Consensus 186 ~s~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~ 264 (673)
.......+...+. ..+.+++||||-. +++.+.....+. +..
T Consensus 186 ~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------~~~-------------------- 227 (412)
T 3fht_A 186 HQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPD--------------PNV-------------------- 227 (412)
T ss_dssp THHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSSS--------------CEE--------------------
T ss_pred cHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcCC--------------CeE--------------------
Confidence 2223333333233 3567899999842 222111111000 000
Q ss_pred HHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC
Q 005858 265 LSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS 344 (673)
Q Consensus 265 l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~ 344 (673)
+...... ...+.. ............|+..+..++.. ..
T Consensus 228 -----~~~~~~~------~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~--~~ 265 (412)
T 3fht_A 228 -----IKLKREE------ETLDTI-----------------------------KQYYVLCSSRDEKFQALCNLYGA--IT 265 (412)
T ss_dssp -----ECCCGGG------SSCTTE-----------------------------EEEEEECSSHHHHHHHHHHHHHH--HS
T ss_pred -----Eeecccc------ccccCc-----------------------------eEEEEEcCChHHHHHHHHHHHhh--cC
Confidence 0000000 000000 00000000112344455555554 35
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccC
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLN 424 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiN 424 (673)
+.++||||+....++.+...|...|+.+..++|+++.++|..+++.|+ .+...+|++|.++++|||
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--------------~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR--------------EGKEKVLVTTNVCARGID 331 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH--------------TTSCSEEEECGGGTSSCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHH--------------CCCCcEEEEcCccccCCC
Confidence 679999999999999999999999999999999999999999999998 333457899999999999
Q ss_pred CCCCCeeEeeCCCCCc------chHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHHH
Q 005858 425 LVAADTVIFYEQDWNP------QVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAERK 481 (673)
Q Consensus 425 L~~a~~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~K 481 (673)
++++++||+||+||++ ..+.|++||++|.|+...+ +.++.. .-+...+.....+
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHH
Confidence 9999999999999876 6999999999999975443 334433 2345555555444
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.9e-27 Score=259.39 Aligned_cols=320 Identities=15% Similarity=0.144 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC-CC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-KL 112 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-~~ 112 (673)
.+|+|+|.+++..++. +.++++..+||+|||+.++..+.... ...+.+|||+|. .++.||.+++.++++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4689999999987654 57899999999999996665554443 234568999997 788999999999986 77
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccC--------
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKN-------- 184 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN-------- 184 (673)
++..++|......... ....+. ...++++|+|++.+......+....+++||+||||.+..
T Consensus 93 ~v~~~~g~~~~~~~~~--~~~~l~---------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEK--FEKSFE---------EDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp CEEECCTTSCHHHHHH--HHHHHH---------HTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred eEEEEECCCChhhHHH--HHHHhh---------cCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhH
Confidence 8888888765422111 111111 123689999999997766556666899999999998632
Q ss_pred -----cccH-HHHHHHhhc------------CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCC
Q 005858 185 -----PSSV-LYNVLREHF------------LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSS 246 (673)
Q Consensus 185 -----~~s~-~~~~l~~~~------------~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~ 246 (673)
.... ....+.. + .....+++||||.+......+.- .++..
T Consensus 162 l~~~~~~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~-~~~~~-------------------- 219 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFST-IKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFR-DLLNF-------------------- 219 (414)
T ss_dssp HHHTTCCHHHHHHHHHH-HHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHH-HHHSC--------------------
T ss_pred HhhcCCcHHHHHHHHHh-cccchhhhhcccCCCceEEEEecCCCcchhHHHHHH-Hhhcc--------------------
Confidence 2222 2233322 2 45678899999776654321100 00000
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccc
Q 005858 247 SAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNT 326 (673)
Q Consensus 247 ~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~ 326 (673)
.+.. ....++... + ...
T Consensus 220 -----------------------------~~~~--~~~~~~~i~-----------------------------~---~~~ 236 (414)
T 3oiy_A 220 -----------------------------TVGR--LVSVARNIT-----------------------------H---VRI 236 (414)
T ss_dssp -----------------------------CSSC--CCCCCCSEE-----------------------------E---EEE
T ss_pred -----------------------------CcCc--cccccccch-----------------------------h---eee
Confidence 0000 000000000 0 001
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEE-EEeCCcCHHHHHHHHHhhccchhHhhhhhhcC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYE-RLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~-~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~ 405 (673)
...|...+..++.. .+.++||||+.....+.+...|...|+.+. .++|. +|. ++.|+
T Consensus 237 ~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~------------- 294 (414)
T 3oiy_A 237 SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK------------- 294 (414)
T ss_dssp SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH-------------
T ss_pred ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh-------------
Confidence 12455566666665 458999999999999999999999999998 88885 444 99998
Q ss_pred CCCcEEEEEe---ccccccccCCCC-CCeeEeeCCC--CCcchHHHHhHhhhccCCc--CeEEEEEEecCCCHHHHHHHH
Q 005858 406 GNDAFVFMIS---TRAGGVGLNLVA-ADTVIFYEQD--WNPQVDKQALQRAHRIGQM--NHVLSINLVTEHTVEEVIMRR 477 (673)
Q Consensus 406 ~~~~~vlL~s---t~agg~GiNL~~-a~~VI~~D~~--wnp~~~~Qa~gR~~RiGQ~--k~V~Vy~lv~~~TiEe~i~~~ 477 (673)
.+...+++++ |.++++|||+++ +++||+||+| +++..+.|++||++|.|+. +.-.++.|+ -|...++.
T Consensus 295 ~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~ 370 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFES 370 (414)
T ss_dssp TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHH
T ss_pred CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHH
Confidence 4556666654 999999999999 9999999999 9999999999999999985 566666666 24555666
Q ss_pred HHHHHH
Q 005858 478 AERKLR 483 (673)
Q Consensus 478 ~~~K~~ 483 (673)
+.+...
T Consensus 371 l~~~~~ 376 (414)
T 3oiy_A 371 LKTRLL 376 (414)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.8e-27 Score=266.49 Aligned_cols=306 Identities=17% Similarity=0.181 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..++|+|.+++..++. +..+++..+||+|||+..+..+... .+.+|||+|. +++.+|.+.+.++. ..
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 4689999999988765 5789999999999999765444321 3578999997 78899999998864 45
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc--cccccCCCccEEEEcCCccccCccc---H
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD--QGFLSQIPWCYTIIDEAQRLKNPSS---V 188 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~--~~~l~~~~~~~vIvDEaH~~KN~~s---~ 188 (673)
+..+++......... ....+. ...++++++|++.+... ...+....+++|||||||.+..... .
T Consensus 92 ~~~l~~~~~~~~~~~--~~~~~~---------~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~ 160 (523)
T 1oyw_A 92 AACLNSTQTREQQLE--VMTGCR---------TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP 160 (523)
T ss_dssp EEEECTTSCHHHHHH--HHHHHH---------HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH
T ss_pred EEEEeCCCCHHHHHH--HHHHHh---------cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH
Confidence 555666543322111 111111 12478999999999643 2334557889999999999865331 1
Q ss_pred HHH---HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 189 LYN---VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 189 ~~~---~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
.+. .+...++...+++|||||......++...+.+-.|..+.
T Consensus 161 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~----------------------------------- 205 (523)
T 1oyw_A 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI----------------------------------- 205 (523)
T ss_dssp HHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-----------------------------------
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-----------------------------------
Confidence 111 122335667889999999754444444333211110000
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
.....|.... . ......++..+..++.. ..+
T Consensus 206 ---------------~~~~r~~l~~-------------------------------~-v~~~~~~~~~l~~~l~~--~~~ 236 (523)
T 1oyw_A 206 ---------------SSFDRPNIRY-------------------------------M-LMEKFKPLDQLMRYVQE--QRG 236 (523)
T ss_dssp ---------------CCCCCTTEEE-------------------------------E-EEECSSHHHHHHHHHHH--TTT
T ss_pred ---------------CCCCCCceEE-------------------------------E-EEeCCCHHHHHHHHHHh--cCC
Confidence 0000110000 0 00012334444455543 367
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCC
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL 425 (673)
.++||||......+.+.+.|...|+.+..++|+++.++|..+++.|. .+...+|++|.++|.|||+
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--------------~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ--------------RDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH--------------TTSCSEEEECTTSCTTTCC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH--------------cCCCeEEEEechhhCCCCc
Confidence 89999999999999999999999999999999999999999999998 2334567899999999999
Q ss_pred CCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 426 VAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 426 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
+.++.||++++|+++..+.|++||++|.|+...+.+
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999998765544
No 29
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=5.1e-26 Score=258.80 Aligned_cols=337 Identities=15% Similarity=0.183 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC----CCCCEEEEECc-ccHHHHHHHHHHHC-
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM----SPGPFLVLCPL-SVTDGWVSEMAKFT- 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~----~~~~~LIV~P~-sll~~W~~E~~k~~- 109 (673)
.|+|+|.+++..++.. .+.++|+..+||+|||++++..+........ ....+|||||. .++.||.+++.++.
T Consensus 43 ~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 5999999999877621 3567899999999999986665544333221 22358999997 78899999999864
Q ss_pred -----CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCcc
Q 005858 110 -----PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQR 181 (673)
Q Consensus 110 -----p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH~ 181 (673)
+...+....|............. ..++|+|+|++.+...... ..-..+++||+||||+
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~--------------~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMNK--------------LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHHH--------------HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred hcccccceEEEEEECCccHHHHHHHHhc--------------CCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 45666666666554443322111 1368999999998654321 1223578999999999
Q ss_pred ccCccc-HHHHHHHhhc---C-----CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhh
Q 005858 182 LKNPSS-VLYNVLREHF---L-----MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRG 252 (673)
Q Consensus 182 ~KN~~s-~~~~~l~~~~---~-----~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~ 252 (673)
+..... .....+...+ . ....+++|||+-.. ..+ +.. .+...
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~~---~~~---------------~~l~~---------- 237 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK-VQK---LAN---------------NIMNK---------- 237 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH-HHH---HTT---------------TTCCS----------
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChH-HHH---HHH---------------HHcCC----------
Confidence 876431 1111111111 1 34689999997321 111 000 00000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccc-ccccCCcH
Q 005858 253 KIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSL-QNTASGKL 331 (673)
Q Consensus 253 ~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l-~~~~s~Kl 331 (673)
.............+.... ........ ......+.
T Consensus 238 --------------------~~~~~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~~~~~ 272 (579)
T 3sqw_A 238 --------------------KECLFLDTVDKNEPEAHE-------------------------RIDQSVVISEKFANSIF 272 (579)
T ss_dssp --------------------SEEEEEESSCSSSCSSCT-------------------------TEEEEEEEESSTTHHHH
T ss_pred --------------------CceEEEeecCcccccccc-------------------------ccceEEEEecchhhhHH
Confidence 000000000000000000 00000000 00011122
Q ss_pred HHHHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHhC---CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 332 VVLDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLELR---KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 332 ~~l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
..+..+...+. ..+.++||||.....++.+...|... ++.+..++|.++.++|..+++.|+
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~-------------- 338 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK-------------- 338 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhh--------------
Confidence 33344444443 45789999999999999999999877 999999999999999999999998
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
.+...+|++|.++++|||++.+++||++|+|+++..+.|++||++|.|+.-.+.+ |++.. |...++.+..
T Consensus 339 ~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 339 KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--ELPFVRELED 408 (579)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--GHHHHHHHHH
T ss_pred cCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE--EEccc--HHHHHHHHHH
Confidence 3334578899999999999999999999999999999999999999997544443 44443 4444544443
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=4.8e-26 Score=275.24 Aligned_cols=315 Identities=17% Similarity=0.189 Sum_probs=217.6
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKF 108 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~ 108 (673)
.+.++++|+|.+++..++..+..+. ++|++.+||+|||.+++..+..... ..+.+||+||.. +..||.++|.++
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHH
Confidence 4567899999999999998776665 7999999999999998755544322 235799999985 679999999988
Q ss_pred CCC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 109 TPK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 109 ~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
++. .++..++|........ .....+ .....+++|+||+.+.... .-.++++|||||+|++..
T Consensus 676 ~~~~~i~v~~l~~~~~~~~~~--~~~~~l---------~~g~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~g~-- 739 (1151)
T 2eyq_A 676 FANWPVRIEMISRFRSAKEQT--QILAEV---------AEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRFGV-- 739 (1151)
T ss_dssp STTTTCCEEEESTTSCHHHHH--HHHHHH---------HTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGSCH--
T ss_pred hhcCCCeEEEEeCCCCHHHHH--HHHHHH---------hcCCCCEEEECHHHHhCCc---cccccceEEEechHhcCh--
Confidence 864 5666666643322211 111111 1234799999999886532 335789999999999743
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
.....+.......++++|||||+++.+..... .+
T Consensus 740 -~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~---~~------------------------------------------ 773 (1151)
T 2eyq_A 740 -RHKERIKAMRANVDILTLTATPIPRTLNMAMS---GM------------------------------------------ 773 (1151)
T ss_dssp -HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHT---TT------------------------------------------
T ss_pred -HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHh---cC------------------------------------------
Confidence 34445554344567899999998653221100 00
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
+ +. ..+..|+...... .. ......+......++..+ ..|+
T Consensus 774 ----~----~~---~~i~~~~~~r~~i--------------------------~~--~~~~~~~~~i~~~il~~l-~~g~ 813 (1151)
T 2eyq_A 774 ----R----DL---SIIATPPARRLAV--------------------------KT--FVREYDSMVVREAILREI-LRGG 813 (1151)
T ss_dssp ----S----EE---EECCCCCCBCBCE--------------------------EE--EEEECCHHHHHHHHHHHH-TTTC
T ss_pred ----C----Cc---eEEecCCCCcccc--------------------------EE--EEecCCHHHHHHHHHHHH-hcCC
Confidence 0 00 0001111110000 00 000011222333444443 5688
Q ss_pred eEEEEecCchHHHHHHHHHHhC--CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccC
Q 005858 347 RVLLFAQMTQTLDILQDFLELR--KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLN 424 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~--g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiN 424 (673)
+++|||+....++.+.+.|... ++.+..++|.++..+|.+++++|+ .+...+|++|.++++|||
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~--------------~g~~~VLVaT~v~e~GiD 879 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--------------HQRFNVLVCTTIIETGID 879 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH--------------TTSCCEEEESSTTGGGSC
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH--------------cCCCcEEEECCcceeeec
Confidence 9999999999999999999887 889999999999999999999998 333456888999999999
Q ss_pred CCCCCeeEeeCC-CCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 425 LVAADTVIFYEQ-DWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 425 L~~a~~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
++++++||++++ .|++..+.|+.||++|.|+...+ |.++..
T Consensus 880 ip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~--~ll~~~ 921 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA--WLLTPH 921 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEE--EEEECC
T ss_pred ccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEE--EEEECC
Confidence 999999999998 69999999999999999975444 445544
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=2.2e-26 Score=260.53 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=211.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~ 113 (673)
..++|+|.+++..++. +..+++..+||+|||+..+..+.. ..+.+|||+|. +++.||.+.+.++ +..
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4799999999987765 578999999999999976544421 23579999997 7889999999998 455
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhc---cc----cccCCCccEEEEcCCccccCcc
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMD---QG----FLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~---~~----~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
+..+.|........ .....+. .....++++++|++.+... .. .+....+.+|||||||.+....
T Consensus 111 ~~~l~~~~~~~~~~--~~~~~l~-------~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 111 ATMLNASSSKEHVK--WVHAEMV-------NKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp EEECCSSCCHHHHH--HHHHHHH-------CTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTC
T ss_pred EEEEeCCCCHHHHH--HHHHHhh-------cccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccc
Confidence 66666654332211 1111110 0234579999999988532 11 2223478999999999976432
Q ss_pred ----c--HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHH
Q 005858 187 ----S--VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTS 260 (673)
Q Consensus 187 ----s--~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 260 (673)
. .....+...++...+++|||||-.....++...+..-.+..
T Consensus 182 ~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~-------------------------------- 229 (591)
T 2v1x_A 182 HDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFT-------------------------------- 229 (591)
T ss_dssp TTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEE--------------------------------
T ss_pred cccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEE--------------------------------
Confidence 1 11123444466778999999995322222222111000000
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHH
Q 005858 261 LKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKK 340 (673)
Q Consensus 261 L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~ 340 (673)
+ ......|... .......+.+...+..++..
T Consensus 230 ---------~---------~~~~~r~nl~-------------------------------~~v~~~~~~~~~~~~~l~~~ 260 (591)
T 2v1x_A 230 ---------F---------TASFNRPNLY-------------------------------YEVRQKPSNTEDFIEDIVKL 260 (591)
T ss_dssp ---------E---------ECCCCCTTEE-------------------------------EEEEECCSSHHHHHHHHHHH
T ss_pred ---------E---------ecCCCCcccE-------------------------------EEEEeCCCcHHHHHHHHHHH
Confidence 0 0000011000 00000111222334444444
Q ss_pred HHh--CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccc
Q 005858 341 LYN--SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRA 418 (673)
Q Consensus 341 ~~~--~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~a 418 (673)
+.. .+.++||||......+.+...|...|+.+..++|+++.++|..+++.|. .+...+|++|.+
T Consensus 261 l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~--------------~g~~~VlVAT~a 326 (591)
T 2v1x_A 261 INGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS--------------ANEIQVVVATVA 326 (591)
T ss_dssp HTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH--------------TTSSSEEEECTT
T ss_pred HHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH--------------cCCCeEEEEech
Confidence 432 5789999999999999999999999999999999999999999999998 333457889999
Q ss_pred cccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 419 GGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 419 gg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
+|.|||++.++.||+|++|+++..|.|++||++|.|+...+.++
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 99999999999999999999999999999999999987655554
No 32
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=2.1e-25 Score=252.97 Aligned_cols=338 Identities=15% Similarity=0.181 Sum_probs=212.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC----CCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM----SPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~----~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
..|+|+|.+++..++.. .+.++|+..+||+|||++++..+........ ....+|||+|. .++.||.+++.++.
T Consensus 93 ~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 35999999999877621 3567899999999999987665544333322 12358999997 78899999998863
Q ss_pred ------CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---ccCCCccEEEEcCCc
Q 005858 110 ------PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---LSQIPWCYTIIDEAQ 180 (673)
Q Consensus 110 ------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l~~~~~~~vIvDEaH 180 (673)
+...+....|............. ..++|+|+|++.+...... ..-..+++||+||||
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMNKMNK--------------LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHHHHHH--------------HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred hhccccCceeEEEEECCcCHHHHHHHHhc--------------CCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 34556666666544433322111 1368999999998654321 122347899999999
Q ss_pred cccCccc-HHHHHHHhhc--------CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchh
Q 005858 181 RLKNPSS-VLYNVLREHF--------LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKR 251 (673)
Q Consensus 181 ~~KN~~s-~~~~~l~~~~--------~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~ 251 (673)
++..... .....+...+ .....+++||||-. ...+ +.. .+...
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~---------------~~~~~--------- 288 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LAN---------------NIMNK--------- 288 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTT---------------TTCCS---------
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHH---HHH---------------HhcCC---------
Confidence 9865431 1111111111 13458999999732 1111 000 00000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCc-
Q 005858 252 GKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGK- 330 (673)
Q Consensus 252 ~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~K- 330 (673)
.............+.... ..............+
T Consensus 289 ---------------------~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 322 (563)
T 3i5x_A 289 ---------------------KECLFLDTVDKNEPEAHE-------------------------RIDQSVVISEKFANSI 322 (563)
T ss_dssp ---------------------SEEEEEESSCSSSCSSCT-------------------------TEEEEEEEESSTTHHH
T ss_pred ---------------------CceEEEeccCCCCccccc-------------------------cCceEEEECchhHhhH
Confidence 000000000000000000 000000000000111
Q ss_pred HHHHHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHhC---CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcC
Q 005858 331 LVVLDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLELR---KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAG 405 (673)
Q Consensus 331 l~~l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~~---g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~ 405 (673)
...+..+...+. ..+.++||||......+.+...|... ++.+..++|+++..+|..+++.|+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~------------- 389 (563)
T 3i5x_A 323 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK------------- 389 (563)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHh-------------
Confidence 122333333333 46789999999999999999999876 999999999999999999999998
Q ss_pred CCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 406 GNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 406 ~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
.+...+|++|.+++.|||++.+++||+||+|+++..+.|++||++|.|+.-.+ +.|+... |...++.+..
T Consensus 390 -~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 390 -KDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--ELPFVRELED 459 (563)
T ss_dssp -HCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHHHH
T ss_pred -cCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEEEchh--HHHHHHHHHH
Confidence 33445788999999999999999999999999999999999999999965443 3444443 4445554443
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=6.8e-27 Score=261.57 Aligned_cols=314 Identities=14% Similarity=0.151 Sum_probs=187.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeE
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEV 114 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v 114 (673)
.|+|+|.+++..+... .+.++|+..+||+|||++++..+......+.....+||+||. .++.||.+++.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999766543 247899999999999999776665554444445579999997 5889999999999865443
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc--ccHHH
Q 005858 115 LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP--SSVLY 190 (673)
Q Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~--~s~~~ 190 (673)
....+....... .....++++|+|++.+.... ..+....+++||+||||++... .....
T Consensus 219 ~~~~~~~~~~~~-----------------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 219 KTAFGIKDSVPK-----------------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp CEEC---------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred eEEEEeCCcccc-----------------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHH
Confidence 333322211110 01235799999999986542 2233456899999999998652 22233
Q ss_pred HHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q 005858 191 NVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFM 269 (673)
Q Consensus 191 ~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 269 (673)
..+...+. ....++|||||- +...++.. .|......
T Consensus 282 ~~i~~~~~~~~~~i~lSAT~~-~~~~~~~~------------------~~~~~~~~------------------------ 318 (508)
T 3fho_A 282 MRIKHLLPRNTQIVLFSATFS-ERVEKYAE------------------RFAPNANE------------------------ 318 (508)
T ss_dssp HHHHHHSCTTCEEEEEESCCS-THHHHHHH------------------HHSTTCEE------------------------
T ss_pred HHHHHhCCcCCeEEEEeCCCC-HHHHHHHH------------------HhcCCCeE------------------------
Confidence 33333343 455799999983 21221111 11100000
Q ss_pred hhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEE
Q 005858 270 LRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVL 349 (673)
Q Consensus 270 lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvl 349 (673)
+ .+ .......+.... ..........|...+..++... .+.++|
T Consensus 319 i-----~~-~~~~~~~~~~~~-----------------------------~~~~~~~~~~k~~~l~~ll~~~--~~~~~L 361 (508)
T 3fho_A 319 I-----RL-KTEELSVEGIKQ-----------------------------LYMDCQSEEHKYNVLVELYGLL--TIGQSI 361 (508)
T ss_dssp E-----CC-CCCC----CCCC-----------------------------EEEEC--CHHHHHHHHHHHC-----CCCEE
T ss_pred E-----Ee-ccccCCcccceE-----------------------------EEEECCchHHHHHHHHHHHHhc--CCCcEE
Confidence 0 00 000000000000 0000001122333444444442 567999
Q ss_pred EEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCC
Q 005858 350 LFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAAD 429 (673)
Q Consensus 350 IFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~ 429 (673)
|||+....++.+...|...++.+..++|+++..+|..+++.|+ .+...+|++|+++++|+|++.++
T Consensus 362 VF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~--------------~g~~~VLVaT~~l~~GiDip~v~ 427 (508)
T 3fho_A 362 IFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR--------------VGTSKVLVTTNVIARGIDVSQVN 427 (508)
T ss_dssp EBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHH--------------SSSCCCCEECC-----CCCTTCC
T ss_pred EEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH--------------CCCCeEEEeCChhhcCCCccCCC
Confidence 9999999999999999999999999999999999999999998 33345788999999999999999
Q ss_pred eeEeeCCC------CCcchHHHHhHhhhccCCcCeEEEE
Q 005858 430 TVIFYEQD------WNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 430 ~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
+||++|++ +++..+.|++||++|.|+...+.++
T Consensus 428 ~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 428 LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp EEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred EEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99999999 7899999999999999976555544
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=255.44 Aligned_cols=310 Identities=16% Similarity=0.163 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH---CCC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF---TPK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~---~p~ 111 (673)
.|+|+|..++..++.. .+.++|+..+||+|||++.+..+......+.....+|||+|. .+..||.+.+.++ .+.
T Consensus 114 ~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 114 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp SCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 5788899999877552 246899999999999999765554443333333469999997 5778887777655 466
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccCcc--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKNPS-- 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN~~-- 186 (673)
..+....+..... .......+|+|+|++.+.... ..+.-..+++||+||+|++....
T Consensus 192 ~~~~~~~~~~~~~------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~ 253 (479)
T 3fmp_B 192 LKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (479)
T ss_dssp CCEEEESTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH
T ss_pred ceEEEEeCCcccc------------------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCc
Confidence 7777666543211 112335689999999996643 23334578999999999985422
Q ss_pred cHHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGIL 265 (673)
Q Consensus 187 s~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l 265 (673)
......+...+. ....+++||||-. +.+.+.....|.. ..
T Consensus 254 ~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~~~--------------~~--------------------- 294 (479)
T 3fmp_B 254 QDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVPDP--------------NV--------------------- 294 (479)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHHHHSSSE--------------EE---------------------
T ss_pred HHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHHHHcCCC--------------eE---------------------
Confidence 222223333232 3567999999842 2222222111100 00
Q ss_pred HHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCC
Q 005858 266 SAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSG 345 (673)
Q Consensus 266 ~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g 345 (673)
+.+.........-...|. .......|...+..++... .+
T Consensus 295 -----------------i~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~--~~ 333 (479)
T 3fmp_B 295 -----------------IKLKREEETLDTIKQYYV----------------------LCSSRDEKFQALCNLYGAI--TI 333 (479)
T ss_dssp -----------------EEEC-----------------------------------------------------------
T ss_pred -----------------EeccccccCcCCceEEEE----------------------EeCCHHHHHHHHHHHHhhc--cC
Confidence 000000000000000000 0000122333444444432 45
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCC
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL 425 (673)
.++||||+.....+.+...|...++.+..++|+++..+|..+++.|+ .+..-+|++|++++.|||+
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~--------------~g~~~iLv~T~~~~~GlDi 399 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR--------------EGKEKVLVTTNVCARGIDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH--------------cCCCcEEEEccccccCCcc
Confidence 68999999999999999999999999999999999999999999998 3344578999999999999
Q ss_pred CCCCeeEeeCCCCCc------chHHHHhHhhhccCCcCeE
Q 005858 426 VAADTVIFYEQDWNP------QVDKQALQRAHRIGQMNHV 459 (673)
Q Consensus 426 ~~a~~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V 459 (673)
+++++||+||+||++ ..+.|++||++|.|+.-.+
T Consensus 400 p~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 400 EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp ----------------------------------------
T ss_pred ccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 999999999999866 6999999999999965443
No 35
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.93 E-value=4.8e-26 Score=233.05 Aligned_cols=171 Identities=20% Similarity=0.196 Sum_probs=133.8
Q ss_pred cccHHHHHHHHHHHhhhHHHHHh---------------------hccccccccccccc------------------cCCc
Q 005858 290 EITVLQKKVYASILRKELPKLLA---------------------LSSRTANHQSLQNT------------------ASGK 330 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~---------------------~~~~~~~~~~l~~~------------------~s~K 330 (673)
.|+..|+++|+.++......+.. .....++||.|... .|||
T Consensus 31 ~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGK 110 (328)
T 3hgt_A 31 TMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGK 110 (328)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHH
T ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccchhhHHHHcCcc
Confidence 47889999999998654333321 12334678777511 5999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcE
Q 005858 331 LVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAF 410 (673)
Q Consensus 331 l~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~ 410 (673)
+.+|+.+|..+.+.|+|||||||++.++|+++++|..+|+.|+|+||+.... +++. . ++..+
T Consensus 111 f~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~------~-----------~~~~~ 172 (328)
T 3hgt_A 111 FSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA------N-----------DFSCT 172 (328)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------------------CCSEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc------c-----------cCCce
Confidence 9999999999999999999999999999999999999999999999996542 2211 0 25667
Q ss_pred EEEEeccccccccC-----CCCCCeeEeeCCCCCcchH-HHHhHhhhcc--CCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 411 VFMISTRAGGVGLN-----LVAADTVIFYEQDWNPQVD-KQALQRAHRI--GQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 411 vlL~st~agg~GiN-----L~~a~~VI~~D~~wnp~~~-~Qa~gR~~Ri--GQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
++|+ |++||.|+| |++||+||.||++|||+.+ .||+.|+||+ ||+++|.||||++.+|+|+.++..-.
T Consensus 173 i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 173 VHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred EEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 8777 568888886 7899999999999999998 9999999999 68999999999999999999998744
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=2.3e-25 Score=257.81 Aligned_cols=313 Identities=15% Similarity=0.183 Sum_probs=209.5
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
.+.++|+|+|.+++..+...+..+ .+.++..+||+|||++++..+......+ ..+||+||. .+..||.+++.++
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHH
Confidence 345689999999999988876554 4889999999999999887765544332 468999998 6779999999999
Q ss_pred CC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 109 TP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 109 ~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
++ ++++..++|+....... .....+ ....++++|+|++.+... +.-.++++||+||+|++....
T Consensus 441 ~~~~gi~v~~l~G~~~~~~r~--~~~~~l---------~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 441 FSKFNIHVALLIGATTPSEKE--KIKSGL---------RNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HTCSSCCEEECCSSSCHHHHH--HHHHHH---------HSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC----
T ss_pred hhhcCceEEEEeCCCCHHHHH--HHHHHH---------hcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH
Confidence 86 57788888875443321 112221 123479999999988553 233467999999999973321
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
...+.......+.++|||||++..+.. .. |....
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~----~~----------------~g~~~----------------------- 540 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMAL----AF----------------YGDLD----------------------- 540 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHH----HH----------------TCCSS-----------------------
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHH----HH----------------hCCcc-----------------------
Confidence 112222224567899999997643221 10 00000
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
..+.. .+|+...- .........+...+...+......|+
T Consensus 541 --------~s~i~----~~p~~r~~-----------------------------i~~~~~~~~~~~~l~~~i~~~l~~g~ 579 (780)
T 1gm5_A 541 --------VTVID----EMPPGRKE-----------------------------VQTMLVPMDRVNEVYEFVRQEVMRGG 579 (780)
T ss_dssp --------CEEEC----CCCSSCCC-----------------------------CEECCCCSSTHHHHHHHHHHHTTTSC
T ss_pred --------eeeee----ccCCCCcc-----------------------------eEEEEeccchHHHHHHHHHHHHhcCC
Confidence 00000 11110000 00000011223334455555557789
Q ss_pred eEEEEecCc--------hHHHHHHHHHHh---CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe
Q 005858 347 RVLLFAQMT--------QTLDILQDFLEL---RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS 415 (673)
Q Consensus 347 kvlIFsq~~--------~~ld~l~~~L~~---~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s 415 (673)
+++|||... ..++.+.+.|.. .++.+..++|+++.++|.++++.|+ .+...+|++
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~--------------~G~~~ILVa 645 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA--------------EGRYDILVS 645 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT--------------TTSSSBCCC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHH--------------CCCCeEEEE
Confidence 999999865 345667777776 4788999999999999999999998 333456889
Q ss_pred ccccccccCCCCCCeeEeeCCC-CCcchHHHHhHhhhccCCcCeEEEE
Q 005858 416 TRAGGVGLNLVAADTVIFYEQD-WNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 416 t~agg~GiNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
|.++++|||++++++||+++++ |+.+.+.|+.||++|.|+...+.++
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 9999999999999999999998 4789999999999999977654443
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-24 Score=257.67 Aligned_cols=360 Identities=14% Similarity=0.118 Sum_probs=217.7
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.+.++|+|||.+++..+.. +.+++++.+||+|||+++...+..... ..+.+||++|. .+..||.++|.++++
T Consensus 82 ~~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 4456799999999988765 578999999999999988655544432 23579999997 788999999999886
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc-c
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS-S 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~-s 187 (673)
.+..+.|+... ....+++|+|++.+.... ....-..+++||+||+|++.+.. .
T Consensus 155 --~vglltGd~~~----------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg 210 (1010)
T 2xgj_A 155 --DVGLMTGDITI----------------------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 210 (1010)
T ss_dssp --CEEEECSSCEE----------------------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTH
T ss_pred --CEEEEeCCCcc----------------------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchh
Confidence 56667775431 123689999999886532 12223467999999999997753 2
Q ss_pred HHHHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 188 VLYNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 188 ~~~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
.....+...++ ..+.++||||+ +| ..++...+.-+.... ...+.....+.. +.
T Consensus 211 ~~~e~il~~l~~~~~il~LSATi-~n-~~e~a~~l~~~~~~~-----------~~vi~~~~rp~p-------------l~ 264 (1010)
T 2xgj_A 211 VVWEETIILLPDKVRYVFLSATI-PN-AMEFAEWICKIHSQP-----------CHIVYTNFRPTP-------------LQ 264 (1010)
T ss_dssp HHHHHHHHHSCTTCEEEEEECCC-TT-HHHHHHHHHHHHTSC-----------EEEEEECCCSSC-------------EE
T ss_pred HHHHHHHHhcCCCCeEEEEcCCC-CC-HHHHHHHHHhhcCCC-----------eEEEecCCCccc-------------ce
Confidence 33333322343 46779999994 23 333333222110000 000000000000 00
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcc---ccccccccccccCCc---HHHHHHHHHH
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSS---RTANHQSLQNTASGK---LVVLDLLLKK 340 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~---~~~~~~~l~~~~s~K---l~~l~~ll~~ 340 (673)
.++.....+.+ ............ ..|...+............ ..............+ ...+..++..
T Consensus 265 ~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~ 337 (1010)
T 2xgj_A 265 HYLFPAHGDGI----YLVVDEKSTFRE---ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKM 337 (1010)
T ss_dssp EEEEETTSSCC----EEEECTTCCBCH---HHHHHHHHTCC------------------------------CHHHHHHHH
T ss_pred EEEEecCCcce----eeeeccccccch---HHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHH
Confidence 00000000000 000000001110 0111111100000000000 000000000000000 2234455555
Q ss_pred HHhC-CCeEEEEecCchHHHHHHHHHHhCCCc---------------------------------------EEEEeCCcC
Q 005858 341 LYNS-GHRVLLFAQMTQTLDILQDFLELRKYS---------------------------------------YERLDGSIR 380 (673)
Q Consensus 341 ~~~~-g~kvlIFsq~~~~ld~l~~~L~~~g~~---------------------------------------~~~i~G~~~ 380 (673)
+... +.++||||.....++.+...|...++. +..++|+++
T Consensus 338 l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~ 417 (1010)
T 2xgj_A 338 IWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL 417 (1010)
T ss_dssp HHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSC
T ss_pred HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCC
Confidence 5443 459999999999999988888664442 788999999
Q ss_pred HHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eCC----CCCcchHHHHhHhhhc
Q 005858 381 AEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YEQ----DWNPQVDKQALQRAHR 452 (673)
Q Consensus 381 ~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D~----~wnp~~~~Qa~gR~~R 452 (673)
..+|..+++.|+ .+..-+|++|.+++.|||++.++.||. ||. ||+|..+.|++||++|
T Consensus 418 ~~eR~~ve~~F~--------------~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 418 PILKEVIEILFQ--------------EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp HHHHHHHHHHHH--------------TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHHh--------------cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 999999999998 334457888899999999999999999 999 9999999999999999
Q ss_pred cCCcCeEEEEEEecCCC
Q 005858 453 IGQMNHVLSINLVTEHT 469 (673)
Q Consensus 453 iGQ~k~V~Vy~lv~~~T 469 (673)
.|+....++|.++..+.
T Consensus 484 ~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 484 RGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp TTTCSSEEEEEEECSCC
T ss_pred CCCCCceEEEEEECCCC
Confidence 99988889999988764
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-23 Score=247.12 Aligned_cols=368 Identities=15% Similarity=0.122 Sum_probs=217.9
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
...++|+|+|.+++..+ ..+.++|++.+||+|||+++...+..... ..+.+||++|. .+..||.+++.+++.
T Consensus 180 ~~~f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 34467999999999865 34689999999999999998766655432 23569999997 678999999999987
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccccCcc-c
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRLKNPS-S 187 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~KN~~-s 187 (673)
.+..+.|+.. .....+++|+|++.+..... ...-..+++|||||||++.... .
T Consensus 253 --~VglltGd~~----------------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 253 --DVGLMTGDIT----------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp --SEEEECSSCB----------------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred --CccEEeCccc----------------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 4555666542 22347899999998865421 1112357899999999997632 2
Q ss_pred -HHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 188 -VLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 188 -~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
.....+...-...+.++|||| ++|. .++...+..+...... .+.....+.. +.
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~~~~~~~~-----------vi~~~~rp~p-------------l~ 362 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSAT-IPNA-MEFAEWICKIHSQPCH-----------IVYTNFRPTP-------------LQ 362 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHHHHHTCSCEE-----------EEEECCCSSC-------------EE
T ss_pred HHHHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHHHhhcCCCeE-----------EEecCCCccc-------------ce
Confidence 223333332234567899999 4443 3444433322211000 0000000000 00
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHh----hccccccccccccccCC---cHHHHHHHHH
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLA----LSSRTANHQSLQNTASG---KLVVLDLLLK 339 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~----~~~~~~~~~~l~~~~s~---Kl~~l~~ll~ 339 (673)
.+++......+. ..+...... ....|...+......... ......... ....... ....+..++.
T Consensus 363 ~~~~~~~~~~~~----~~vd~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~ 434 (1108)
T 3l9o_A 363 HYLFPAHGDGIY----LVVDEKSTF---REENFQKAMASISNQIGDDPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVK 434 (1108)
T ss_dssp EEEEETTSSCCE----EEEETTTEE---CHHHHHHHHTTC------------------------------CHHHHHHHHH
T ss_pred EEEeecCCccee----eeeccccch---hhhhHHHHHHHHHhhhccccccccccccccc-ccccccccccchhHHHHHHH
Confidence 000000000000 000000000 001111111100000000 000000000 0000001 1334555555
Q ss_pred HHHhC-CCeEEEEecCchHHHHHHHHHHhCCCc---------------------------------------EEEEeCCc
Q 005858 340 KLYNS-GHRVLLFAQMTQTLDILQDFLELRKYS---------------------------------------YERLDGSI 379 (673)
Q Consensus 340 ~~~~~-g~kvlIFsq~~~~ld~l~~~L~~~g~~---------------------------------------~~~i~G~~ 379 (673)
.+... +.++||||......+.+...|...++. +..++|++
T Consensus 435 ~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l 514 (1108)
T 3l9o_A 435 MIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGL 514 (1108)
T ss_dssp HHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCS
T ss_pred HHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCC
Confidence 55444 469999999999999888887543322 78899999
Q ss_pred CHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcch--------HHHHhHhhh
Q 005858 380 RAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQV--------DKQALQRAH 451 (673)
Q Consensus 380 ~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~--------~~Qa~gR~~ 451 (673)
++.+|..+++.|. .+..-+|++|.+++.|||++++++||.++.+|++.. |.|+.||++
T Consensus 515 ~~~~R~~v~~~F~--------------~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAG 580 (1108)
T 3l9o_A 515 LPILKEVIEILFQ--------------EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAG 580 (1108)
T ss_dssp CHHHHHHHHHHHH--------------HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHh--------------CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccC
Confidence 9999999999998 334457889999999999999999999988887654 999999999
Q ss_pred ccCCcCeEEEEEEecCCCHHHHHHHHH
Q 005858 452 RIGQMNHVLSINLVTEHTVEEVIMRRA 478 (673)
Q Consensus 452 RiGQ~k~V~Vy~lv~~~TiEe~i~~~~ 478 (673)
|.|+...-++|.++..+..+..+.+.+
T Consensus 581 R~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 581 RRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp CSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred CCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 999999999999988875444444443
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1e-22 Score=237.34 Aligned_cols=327 Identities=17% Similarity=0.138 Sum_probs=207.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCC-CCe
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTP-KLE 113 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p-~~~ 113 (673)
.|+|+|.+++..++ ..+.+++++.+||+|||+++..++....... .+.+|+++|.. +..+|.+++.++.+ +.+
T Consensus 30 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 79999999987532 3378999999999999999865554332212 35799999975 88999999966553 677
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCcc-cHHH
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNPS-SVLY 190 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~~-s~~~ 190 (673)
+....|....... .....+++|+|++.+...... ..-.++++||+||+|.+.+.. ....
T Consensus 105 v~~~~G~~~~~~~------------------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l 166 (715)
T 2va8_A 105 VAMTSGDYDTDDA------------------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVV 166 (715)
T ss_dssp EEECCSCSSSCCG------------------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHH
T ss_pred EEEEeCCCCCchh------------------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHH
Confidence 7777775432110 011468999999988553211 112357899999999987522 2223
Q ss_pred HHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHh
Q 005858 191 NVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFML 270 (673)
Q Consensus 191 ~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l 270 (673)
..+...++..+.++|||||- +..++.. |+....+. .. . +++-+
T Consensus 167 ~~i~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~----------~~---~-------------------r~~~l 209 (715)
T 2va8_A 167 ESVTIRAKRRNLLALSATIS--NYKQIAK---WLGAEPVA----------TN---W-------------------RPVPL 209 (715)
T ss_dssp HHHHHHHHTSEEEEEESCCT--THHHHHH---HHTCEEEE----------CC---C-------------------CSSCE
T ss_pred HHHHHhcccCcEEEEcCCCC--CHHHHHH---HhCCCccC----------CC---C-------------------CCCCc
Confidence 33332355678899999984 2333332 22211100 00 0 00000
Q ss_pred hhhhhhhhhcCCccCCCc-ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEE
Q 005858 271 RRTKQKLVECGHLMLPPL-TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVL 349 (673)
Q Consensus 271 rr~k~~v~~~~~~~lp~~-~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvl 349 (673)
.. .+.. -+.. .... . ...... ...+. ... .+..++......++++|
T Consensus 210 ~~---~~~~-----~~~~~~~~~--------------~----~~~~~~--~~~~~-~~~----~~~~~~~~~~~~~~~~L 256 (715)
T 2va8_A 210 IE---GVIY-----PERKKKEYN--------------V----IFKDNT--TKKVH-GDD----AIIAYTLDSLSKNGQVL 256 (715)
T ss_dssp EE---EEEE-----ECSSTTEEE--------------E----EETTSC--EEEEE-SSS----HHHHHHHHHHTTTCCEE
T ss_pred eE---EEEe-----cCCccccee--------------e----ecCcch--hhhcc-cch----HHHHHHHHHHhcCCCEE
Confidence 00 0000 0000 0000 0 000000 00000 011 12333344446789999
Q ss_pred EEecCchHHHHHHHHHHhCC------------------------------------CcEEEEeCCcCHHHHHHHHHhhcc
Q 005858 350 LFAQMTQTLDILQDFLELRK------------------------------------YSYERLDGSIRAEERFAAIRHFSV 393 (673)
Q Consensus 350 IFsq~~~~ld~l~~~L~~~g------------------------------------~~~~~i~G~~~~~~R~~~i~~F~~ 393 (673)
||+......+.+...|.... ..+..++|+++.++|..+++.|.
T Consensus 257 VF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~- 335 (715)
T 2va8_A 257 VFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFR- 335 (715)
T ss_dssp EECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH-
T ss_pred EEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHH-
Confidence 99999999988888887542 34889999999999999999998
Q ss_pred chhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eC-------CCCCcchHHHHhHhhhccCCcCeEEEE
Q 005858 394 QSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YE-------QDWNPQVDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 394 ~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D-------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
.+..-+|++|.+++.|||+++.+.||. || .|+++..+.|+.||++|.|+.++-.+|
T Consensus 336 -------------~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 402 (715)
T 2va8_A 336 -------------QRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESI 402 (715)
T ss_dssp -------------TTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred -------------cCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 445567889999999999999999998 99 899999999999999999999888899
Q ss_pred EEecCCC
Q 005858 463 NLVTEHT 469 (673)
Q Consensus 463 ~lv~~~T 469 (673)
++++...
T Consensus 403 ~l~~~~~ 409 (715)
T 2va8_A 403 VVVRDKE 409 (715)
T ss_dssp EECSCGG
T ss_pred EEeCCch
Confidence 9987764
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=4.6e-22 Score=237.18 Aligned_cols=382 Identities=15% Similarity=0.102 Sum_probs=220.1
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.+.++|+|+|.+++..+.. +..++++.+||+|||++++..+..+.. ..+.+||++|. .+..||.+++.++++
T Consensus 35 ~~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 4557899999999976654 578999999999999976665554432 23468999996 788999999999988
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc--c
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP--S 186 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~--~ 186 (673)
+..+..++|+... ....+++|+|++.+.... ....-..+++||+||||++.+. .
T Consensus 108 ~~~v~~l~G~~~~----------------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g 165 (997)
T 4a4z_A 108 DVNIGLITGDVQI----------------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRG 165 (997)
T ss_dssp -CCEEEECSSCEE----------------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTT
T ss_pred CCeEEEEeCCCcc----------------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchH
Confidence 8888888886531 224689999999986543 2222346799999999998663 2
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCC-CC--C------ChHHHHHHhh-hhccCCCcchhhhHHH
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPS-VF--G------TLNQFLSTFK-DAVHSSSAPKRGKIKE 256 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~-~~--~------~~~~f~~~f~-~~~~~~~~~~~~~~~~ 256 (673)
......+...-...+.++|||||- +..++...+...... .. . ....+ .+. ................
T Consensus 166 ~~~e~ii~~l~~~v~iIlLSAT~~--n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~--v~~~~~~~~~~~~~~~~~~~ 241 (997)
T 4a4z_A 166 VVWEEVIIMLPQHVKFILLSATVP--NTYEFANWIGRTKQKNIYVISTPKRPVPLEIN--IWAKKELIPVINQNSEFLEA 241 (997)
T ss_dssp CCHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHHHHHTCCEEEEECSSCSSCEEEE--EEETTEEEEEECTTCCBCHH
T ss_pred HHHHHHHHhcccCCCEEEEcCCCC--ChHHHHHHHhcccCCceEEEecCCCCccceEE--EecCCcchhcccchhhhhHH
Confidence 334444443223466799999963 233433333221100 00 0 00000 000 0000000000000000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHH--HHHHhhhHHHHH---hhc------ccc--------
Q 005858 257 QFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVY--ASILRKELPKLL---ALS------SRT-------- 317 (673)
Q Consensus 257 ~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y--~~~l~~~~~~l~---~~~------~~~-------- 317 (673)
........+... ... ..++. ... ++... ..........-. ... ...
T Consensus 242 ~~~~~~~~l~~~----~~~--------~~~~~--~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~ 306 (997)
T 4a4z_A 242 NFRKHKEILNGE----SAK--------GAPSK--TDN-GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAI 306 (997)
T ss_dssp HHHHHHHHHC----------------------------------------------------------------------
T ss_pred HHHHHHHHhhcc----ccc--------ccccc--ccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 000000000000 000 00000 000 00000 000000000000 000 000
Q ss_pred ----ccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCC-----------------------
Q 005858 318 ----ANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKY----------------------- 370 (673)
Q Consensus 318 ----~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~----------------------- 370 (673)
............++..+...+.. ....++||||......+.+...|...++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 384 (997)
T 4a4z_A 307 GSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKE 384 (997)
T ss_dssp ----------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred cccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchh
Confidence 00000000122233344444433 3457999999999999999888876555
Q ss_pred ----------------cEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEee
Q 005858 371 ----------------SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFY 434 (673)
Q Consensus 371 ----------------~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~ 434 (673)
.+..++|+++..+|..+++.|+ .+..-+|++|.+++.|||+++ .+||++
T Consensus 385 d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~--------------~G~~kVLvAT~~~a~GIDiP~-~~VVi~ 449 (997)
T 4a4z_A 385 DRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS--------------KGFIKVLFATETFAMGLNLPT-RTVIFS 449 (997)
T ss_dssp HHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH--------------TTCCSEEEECTHHHHSCCCCC-SEEEES
T ss_pred hhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHH--------------CCCCcEEEEchHhhCCCCCCC-ceEEEe
Confidence 4789999999999999999998 344557899999999999999 777776
Q ss_pred CCCC---------CcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHH
Q 005858 435 EQDW---------NPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRA 478 (673)
Q Consensus 435 D~~w---------np~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~ 478 (673)
+.+. ++..+.|+.||++|.|+...-++|.+......+...+...
T Consensus 450 ~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 450 SIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 6555 9999999999999999998888888887666666555544
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=5e-23 Score=240.02 Aligned_cols=321 Identities=17% Similarity=0.129 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHH-HHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC-CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAI-SFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai-~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-~~ 112 (673)
.|+|+|.+++..++ ..+.+++++.+||+|||+++. .++..+... .+.+|+++|. .+..+|.+++.++.+ +.
T Consensus 23 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 69999999987522 236889999999999999984 444444322 3569999996 788999999976654 67
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCc-ccHH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNP-SSVL 189 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~-~s~~ 189 (673)
++..++|+...... .....+++|+|++.+...... ..-..+++||+||+|.+... .+..
T Consensus 97 ~v~~~~G~~~~~~~------------------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (720)
T 2zj8_A 97 RVAMATGDYDSKDE------------------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGAT 158 (720)
T ss_dssp CEEEECSCSSCCCG------------------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH
T ss_pred EEEEecCCCCcccc------------------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHH
Confidence 88888885432110 012468999999988543211 11235789999999998752 2233
Q ss_pred HHHHHhhcC-CCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q 005858 190 YNVLREHFL-MPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAF 268 (673)
Q Consensus 190 ~~~l~~~~~-~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 268 (673)
...+...++ ..+.++||||+- +..++.. |+....+ ... . +
T Consensus 159 ~~~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~~~~~----------~~~---~-------------------r-- 199 (720)
T 2zj8_A 159 LEVILAHMLGKAQIIGLSATIG--NPEELAE---WLNAELI----------VSD---W-------------------R-- 199 (720)
T ss_dssp HHHHHHHHBTTBEEEEEECCCS--CHHHHHH---HTTEEEE----------ECC---C-------------------C--
T ss_pred HHHHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhCCccc----------CCC---C-------------------C--
Confidence 333332243 567899999973 2333222 2211000 000 0 0
Q ss_pred HhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeE
Q 005858 269 MLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRV 348 (673)
Q Consensus 269 ~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kv 348 (673)
..|....... .... ...... ......+...+. .....++++
T Consensus 200 ---------------p~~l~~~~~~----------~~~~----~~~~~~------~~~~~~~~~~~~----~~~~~~~~~ 240 (720)
T 2zj8_A 200 ---------------PVKLRRGVFY----------QGFV----TWEDGS------IDRFSSWEELVY----DAIRKKKGA 240 (720)
T ss_dssp ---------------SSEEEEEEEE----------TTEE----EETTSC------EEECSSTTHHHH----HHHHTTCCE
T ss_pred ---------------CCcceEEEEe----------CCee----eccccc------hhhhhHHHHHHH----HHHhCCCCE
Confidence 0000000000 0000 000000 000122223333 333568899
Q ss_pred EEEecCchHHHHHHHHHHhC---------------------------------CCcEEEEeCCcCHHHHHHHHHhhccch
Q 005858 349 LLFAQMTQTLDILQDFLELR---------------------------------KYSYERLDGSIRAEERFAAIRHFSVQS 395 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~~~---------------------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~ 395 (673)
||||......+.+...|... ...+..++|+++.++|..+.+.|+
T Consensus 241 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~--- 317 (720)
T 2zj8_A 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR--- 317 (720)
T ss_dssp EEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH---
T ss_pred EEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH---
Confidence 99999998888887777542 124889999999999999999998
Q ss_pred hHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eC----CCCCcchHHHHhHhhhccCCcCeEEEEEEecC
Q 005858 396 AIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YE----QDWNPQVDKQALQRAHRIGQMNHVLSINLVTE 467 (673)
Q Consensus 396 ~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D----~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~ 467 (673)
.+...+|++|.+++.|||+++.+.||. || .|+++..+.|+.||++|.|+.++-.+|.+++.
T Consensus 318 -----------~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 386 (720)
T 2zj8_A 318 -----------KGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS 386 (720)
T ss_dssp -----------TTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS
T ss_pred -----------CCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecC
Confidence 344456789999999999999999998 77 68999999999999999999999999999988
Q ss_pred CCHHH
Q 005858 468 HTVEE 472 (673)
Q Consensus 468 ~TiEe 472 (673)
...+.
T Consensus 387 ~~~~~ 391 (720)
T 2zj8_A 387 DDPRE 391 (720)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 87543
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=1.7e-22 Score=234.87 Aligned_cols=321 Identities=18% Similarity=0.153 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCC-CCe
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTP-KLE 113 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p-~~~ 113 (673)
.|+|+|.+++..+. .+.+++++.+||+|||+++...+...... .+.+|+++|.. +..+|.+++.++.+ +.+
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 68999999998743 37899999999999999986555433222 35799999974 88999999976654 577
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--ccCCCccEEEEcCCccccCcc-cHHH
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--LSQIPWCYTIIDEAQRLKNPS-SVLY 190 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--l~~~~~~~vIvDEaH~~KN~~-s~~~ 190 (673)
+....|+..... ......+++|+|++.+...... ..-..+++||+||+|.+.+.. +...
T Consensus 98 v~~~~G~~~~~~------------------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (702)
T 2p6r_A 98 IGISTGDYESRD------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATL 159 (702)
T ss_dssp EEEECSSCBCCS------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHH
T ss_pred EEEEeCCCCcch------------------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHH
Confidence 888887643211 1123679999999988553221 112357899999999987632 2222
Q ss_pred -HHHHh---hcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHH
Q 005858 191 -NVLRE---HFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILS 266 (673)
Q Consensus 191 -~~l~~---~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~ 266 (673)
..+.. ..+..+.++||||+- +..++.. ++....+. ..
T Consensus 160 ~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~----------~~------------------------ 200 (702)
T 2p6r_A 160 EILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADYYV----------SD------------------------ 200 (702)
T ss_dssp HHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEEEE----------CC------------------------
T ss_pred HHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCccc----------CC------------------------
Confidence 22221 124567899999973 2333322 22211100 00
Q ss_pred HHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC
Q 005858 267 AFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH 346 (673)
Q Consensus 267 ~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~ 346 (673)
....|-...... .... ...... ...... -. +..++......++
T Consensus 201 ---------------~r~~~l~~~~~~----------~~~~----~~~~~~--~~~~~~--~~----~~~~~~~~~~~~~ 243 (702)
T 2p6r_A 201 ---------------WRPVPLVEGVLC----------EGTL----ELFDGA--FSTSRR--VK----FEELVEECVAENG 243 (702)
T ss_dssp ---------------CCSSCEEEEEEC----------SSEE----EEEETT--EEEEEE--CC----HHHHHHHHHHTTC
T ss_pred ---------------CCCccceEEEee----------CCee----eccCcc--hhhhhh--hh----HHHHHHHHHhcCC
Confidence 000110000000 0000 000000 000000 00 2223333345788
Q ss_pred eEEEEecCchHHHHHHHHHHhC------------------------------CCcEEEEeCCcCHHHHHHHHHhhccchh
Q 005858 347 RVLLFAQMTQTLDILQDFLELR------------------------------KYSYERLDGSIRAEERFAAIRHFSVQSA 396 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~------------------------------g~~~~~i~G~~~~~~R~~~i~~F~~~~~ 396 (673)
++||||......+.+...|... +..+..++|+++.++|..+.+.|.
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~---- 319 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR---- 319 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH----
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHH----
Confidence 9999999998888877777542 234677999999999999999998
Q ss_pred HhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eC---CCCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 397 IERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YE---QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 397 ~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D---~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
.+...+|++|.+++.|||+++.+.||. || .|+++..+.|+.||++|.|+.++-.+|.++....
T Consensus 320 ----------~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 320 ----------RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp ----------TTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred ----------CCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 445567889999999999999999998 77 7899999999999999999999999999988776
Q ss_pred HH
Q 005858 470 VE 471 (673)
Q Consensus 470 iE 471 (673)
.+
T Consensus 390 ~~ 391 (702)
T 2p6r_A 390 RE 391 (702)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=1.9e-21 Score=233.84 Aligned_cols=322 Identities=15% Similarity=0.139 Sum_probs=219.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC-CC
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT-PK 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~-p~ 111 (673)
.++|+|+|..++..++. +.++|+..++|+|||+.++..+.... .....+|||+|. .++.|+.+.+.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999976654 57899999999999996666554443 233568999997 67899999999976 45
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc-----
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS----- 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~----- 186 (673)
+++..++|......... ....+ ....++++|+|++.+......+....+++||+||||.+....
T Consensus 149 i~v~~l~Gg~~~~er~~--~~~~l---------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEK--FEKSF---------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp SCEEEECTTCCTTHHHH--HHHHH---------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred CeEEEEeCCCCHHHHHH--HHHHH---------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchh
Confidence 68888888765411110 01111 122479999999999766555556688999999999864321
Q ss_pred --------cH-HHHHHHhhc------------CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccC
Q 005858 187 --------SV-LYNVLREHF------------LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHS 245 (673)
Q Consensus 187 --------s~-~~~~l~~~~------------~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~ 245 (673)
.. ....+.. + .....+++||||.+..+.+.+. -.++..
T Consensus 218 ~L~~~gf~~~~i~~il~~-l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~i------------------- 276 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFST-IKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLNF------------------- 276 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHH-HHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTCC-------------------
T ss_pred hhHhcCCCHHHHHHHHHh-cccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcceeE-------------------
Confidence 11 2233322 2 3457799999987665443110 000000
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhcccccccccccc
Q 005858 246 SSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQN 325 (673)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~ 325 (673)
.+.. .....+... + ..
T Consensus 277 ------------------------------~v~~-~~~~~~~i~------------------------------~---~~ 292 (1104)
T 4ddu_A 277 ------------------------------TVGR-LVSVARNIT------------------------------H---VR 292 (1104)
T ss_dssp ------------------------------CCCB-CCCCCCCEE------------------------------E---EE
T ss_pred ------------------------------Eecc-CCCCcCCce------------------------------e---EE
Confidence 0000 000000000 0 00
Q ss_pred ccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEE-EEeCCcCHHHHHHHHHhhccchhHhhhhhhc
Q 005858 326 TASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYE-RLDGSIRAEERFAAIRHFSVQSAIERLYSEA 404 (673)
Q Consensus 326 ~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~-~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~ 404 (673)
....|...|..++.. .+.++||||+.....+.+...|...|+++. .++| +|.+ ++.|+
T Consensus 293 ~~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~------------ 351 (1104)
T 4ddu_A 293 ISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFK------------ 351 (1104)
T ss_dssp ESCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHH------------
T ss_pred EecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHH------------
Confidence 112455566666665 458999999999999999999999999998 8998 2555 99998
Q ss_pred CCCCcEEEEEe---ccccccccCCCC-CCeeEeeCCCC------------------------------------------
Q 005858 405 GGNDAFVFMIS---TRAGGVGLNLVA-ADTVIFYEQDW------------------------------------------ 438 (673)
Q Consensus 405 ~~~~~~vlL~s---t~agg~GiNL~~-a~~VI~~D~~w------------------------------------------ 438 (673)
.+...|++.+ |.+++.|||+++ +++||+||+|-
T Consensus 352 -~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~ 430 (1104)
T 4ddu_A 352 -VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKE 430 (1104)
T ss_dssp -HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHH
T ss_pred -CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555565554 999999999999 99999999997
Q ss_pred ------------------------------CcchHHHHhHhhhccCCc---CeEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 005858 439 ------------------------------NPQVDKQALQRAHRIGQM---NHVLSINLVTEHTVEEVIMRRAERKLRLS 485 (673)
Q Consensus 439 ------------------------------np~~~~Qa~gR~~RiGQ~---k~V~Vy~lv~~~TiEe~i~~~~~~K~~l~ 485 (673)
++..|.||.||+.|.|.. +.+-| .++ =|+.+++.+.++....
T Consensus 431 ~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi-~~~----~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 431 HLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSV-IFE----EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp CCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEE-EEC----CCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEE-EEE----ecHHHHHHHHHHHhhh
Confidence 677899999999998753 33333 233 2678888888887754
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=2.8e-22 Score=237.79 Aligned_cols=349 Identities=14% Similarity=0.129 Sum_probs=202.8
Q ss_pred cCCCcHHHHHHHHHHHHHhcC----------CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC-cccHHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLL----------GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP-LSVTDGWV 102 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~----------~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P-~sll~~W~ 102 (673)
...|+|||.+|+.+++..+.. +.+|++.+.||+|||++++.++..+. ......++||||| ..+..||.
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~-~~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLAT-ELDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHT-TCTTCCEEEEEECGGGCCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHH-hcCCCceEEEEeCcHHHHHHHH
Confidence 457999999999999875432 35799999999999999977775443 2233457999999 57889999
Q ss_pred HHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc---c-cCCCccEEEEcC
Q 005858 103 SEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF---L-SQIPWCYTIIDE 178 (673)
Q Consensus 103 ~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~---l-~~~~~~~vIvDE 178 (673)
++|.+|.+.. +..+.. ...+...+ . ....+|+|+|++.+...... + ....+.+||+||
T Consensus 348 ~~f~~f~~~~---v~~~~s--~~~l~~~L----~---------~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDE 409 (1038)
T 2w00_A 348 KEYQRFSPDS---VNGSEN--TAGLKRNL----D---------KDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDE 409 (1038)
T ss_dssp HHHHTTSTTC---SSSSCC--CHHHHHHH----H---------CSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEES
T ss_pred HHHHHhcccc---cccccC--HHHHHHHh----c---------CCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEc
Confidence 9999988652 111211 11121111 0 12468999999999764221 1 122679999999
Q ss_pred CccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHH
Q 005858 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQF 258 (673)
Q Consensus 179 aH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~ 258 (673)
||+... ....+.+...++...+++|||||....-.. ++ ..-...|+..+..+.
T Consensus 410 AHrs~~--~~~~~~I~~~~p~a~~lgfTATP~~~~~~~-------------~~-~~t~~~FG~~i~~Y~----------- 462 (1038)
T 2w00_A 410 CHRSQF--GEAQKNLKKKFKRYYQFGFTGTPIFPENAL-------------GS-ETTASVFGRELHSYV----------- 462 (1038)
T ss_dssp CCTTHH--HHHHHHHHHHCSSEEEEEEESSCCCSTTCT-------------TS-CCHHHHHCSEEEEEC-----------
T ss_pred cchhcc--hHHHHHHHHhCCcccEEEEeCCccccccch-------------hh-hHHHHHhCCeeEeec-----------
Confidence 999653 234555655677788999999998642100 00 000111222111110
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhh-hHHHHHhhccccccccccccccCCcHHH-HHH
Q 005858 259 TSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRK-ELPKLLALSSRTANHQSLQNTASGKLVV-LDL 336 (673)
Q Consensus 259 ~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~-~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ 336 (673)
+...+ .+ ...+|...+...... .+...... .......... ...+. ...++.. +..
T Consensus 463 --l~~AI------------~d--g~l~p~~v~y~~v~~-~~~~~~~e~d~~~~~~i~~----~~~l~--~~~ri~~I~~~ 519 (1038)
T 2w00_A 463 --ITDAI------------RD--EKVLKFKVDYNDVRP-QFKSLETETDEKKLSAAEN----QQAFL--HPMRIQEITQY 519 (1038)
T ss_dssp --HHHHH------------HH--TSSCCEEEEECCCCG-GGHHHHTCCCHHHHHHTCS----TTTTT--CHHHHHHHHHH
T ss_pred --HHHHH------------hC--CCcCCeEEEEEeccc-hhhhccccccHHHHHHHHH----HHHhc--CHHHHHHHHHH
Confidence 00000 00 011222111000000 00000000 0000000000 00000 1112222 333
Q ss_pred HHHHHHh---------CCCeEEEEecCchHHHHHHHHHHhCC------------CcE-EEEeCC----------c-----
Q 005858 337 LLKKLYN---------SGHRVLLFAQMTQTLDILQDFLELRK------------YSY-ERLDGS----------I----- 379 (673)
Q Consensus 337 ll~~~~~---------~g~kvlIFsq~~~~ld~l~~~L~~~g------------~~~-~~i~G~----------~----- 379 (673)
++..+.. .+.+++|||.....+..+.+.|...+ +++ +.++|. +
T Consensus 520 Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~ 599 (1038)
T 2w00_A 520 ILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETF 599 (1038)
T ss_dssp HHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCS
T ss_pred HHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccc
Confidence 4443322 35689999999999988888886543 455 445543 1
Q ss_pred -----CHH-----------------------------HHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCC
Q 005858 380 -----RAE-----------------------------ERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNL 425 (673)
Q Consensus 380 -----~~~-----------------------------~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL 425 (673)
+.. .|..++++|+ ++ ..-+|++++...+|+|.
T Consensus 600 ~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk-------------~g-~i~ILIvvd~lltGfDi 665 (1038)
T 2w00_A 600 DTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVK-------------NQ-DIDLLIVVGMFLTGFDA 665 (1038)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHH-------------TT-SSSEEEESSTTSSSCCC
T ss_pred cccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH-------------cC-CCeEEEEcchHHhCcCc
Confidence 211 3667777777 23 34567788999999999
Q ss_pred CCCCeeEeeCCCCCcchHHHHhHhhhccCCc-C-eEEEEEEec
Q 005858 426 VAADTVIFYEQDWNPQVDKQALQRAHRIGQM-N-HVLSINLVT 466 (673)
Q Consensus 426 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~-k-~V~Vy~lv~ 466 (673)
+.+ +++++|.|.++..+.||+||+.|.+.. | ...|+.|+.
T Consensus 666 P~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 666 PTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999 678899999999999999999999864 3 466777763
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.84 E-value=3.4e-20 Score=222.95 Aligned_cols=318 Identities=14% Similarity=0.162 Sum_probs=205.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCC-
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPK- 111 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~- 111 (673)
++.+ |+|.+++..++. +.++|+..++|+|||+.++.++..+.. ....+|||+|. .+..|+.+.+.++++.
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 4447 999999977664 589999999999999855555554432 23568999997 6779999999988854
Q ss_pred -C----eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 112 -L----EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 112 -~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
+ .+..++|.......... ...+ . .++|+|+|++.+......+. .+++||+||||++.+..
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~--~~~l----------~-~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~ 191 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENF--MQNL----------R-NFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKAS 191 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHH--HHSG----------G-GCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTST
T ss_pred CCCccceEEEEeCCCChhhHHHH--Hhhc----------c-CCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhcc
Confidence 3 66777776544331111 1111 1 16899999999987665544 67899999999987744
Q ss_pred cHHHHHHHhhc------------CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhH
Q 005858 187 SVLYNVLREHF------------LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKI 254 (673)
Q Consensus 187 s~~~~~l~~~~------------~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 254 (673)
......+.. + .....+++|+|+-.. .++.. .+...+..
T Consensus 192 ~~~~~i~~~-lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~~~~~~~------------- 241 (1054)
T 1gku_B 192 KNVDKLLHL-LGFHYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------ELFRQLLN------------- 241 (1054)
T ss_dssp HHHHHHHHH-TTEEEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HHHHHHHC-------------
T ss_pred ccHHHHHHH-hCcchhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HHhhcceE-------------
Confidence 444444332 2 123468888886543 11100 00000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHH
Q 005858 255 KEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVL 334 (673)
Q Consensus 255 ~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l 334 (673)
+ .+ .......+.... . .....|...|
T Consensus 242 ---------------i-----~v-~~~~~~~~~i~~------------------------------~---~~~~~k~~~L 267 (1054)
T 1gku_B 242 ---------------F-----DI-GSSRITVRNVED------------------------------V---AVNDESISTL 267 (1054)
T ss_dssp ---------------C-----CC-SCCEECCCCEEE------------------------------E---EESCCCTTTT
T ss_pred ---------------E-----Ec-cCcccCcCCceE------------------------------E---EechhHHHHH
Confidence 0 00 000000000000 0 0012344445
Q ss_pred HHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEE
Q 005858 335 DLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMI 414 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~ 414 (673)
..++.. .+.++||||......+.+.+.|... +++..++|.+. .+++.|+ .+...|+++
T Consensus 268 ~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~-------------~G~~~VLVa 325 (1054)
T 1gku_B 268 SSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFV-------------EGEIDHLIG 325 (1054)
T ss_dssp HHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHH-------------HTSCSEEEE
T ss_pred HHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHH-------------cCCCcEEEE
Confidence 555543 3679999999999999999999888 99999999873 6788898 355666666
Q ss_pred e---ccccccccCCCCC-CeeEeeCCC-----------------------------------------------------
Q 005858 415 S---TRAGGVGLNLVAA-DTVIFYEQD----------------------------------------------------- 437 (673)
Q Consensus 415 s---t~agg~GiNL~~a-~~VI~~D~~----------------------------------------------------- 437 (673)
+ |.++++|||++.+ ++||++|+|
T Consensus 326 Tas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1054)
T 1gku_B 326 TAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMG 405 (1054)
T ss_dssp ECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHT
T ss_pred ecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 9999999999995 999999999
Q ss_pred ------------------CCcchHHHHhHhhhccCCcC--eEEEEEEecCCCHHHHHHHHHHHHHHH
Q 005858 438 ------------------WNPQVDKQALQRAHRIGQMN--HVLSINLVTEHTVEEVIMRRAERKLRL 484 (673)
Q Consensus 438 ------------------wnp~~~~Qa~gR~~RiGQ~k--~V~Vy~lv~~~TiEe~i~~~~~~K~~l 484 (673)
.++..|.|+.||++|.|..- ....+.+. + |..+++.+.++.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~--~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 406 KERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE--D--DSELLSAFIERAKL 468 (1054)
T ss_dssp TSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--S--CHHHHHHHHHHHHT
T ss_pred cccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe--c--CHHHHHHHHHHHhh
Confidence 78999999999999987753 34444333 3 56677777766654
No 46
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=4.8e-19 Score=182.64 Aligned_cols=164 Identities=10% Similarity=0.078 Sum_probs=121.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~ 111 (673)
.+|+|||.+++.+++.. .+++|+++||+|||++++.++..+...+ .+++|||||. +++.||.+++.++.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhc----CCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 58999999999988875 6789999999999999988877654332 3479999997 788999999999974 3
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHH
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYN 191 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~ 191 (673)
..+..+.+...... ......+++|+||+.+...... ....+++||+||||++.+. ....
T Consensus 186 ~~~~~~~~~~~~~~------------------~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~ 244 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISS 244 (282)
T ss_dssp GGEEECSTTCSSTT------------------CCCTTCSEEEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHH
T ss_pred ceEEEEeCCCcchh------------------hhccCCcEEEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHH
Confidence 45554444332110 1224578999999999776432 2246799999999999853 3444
Q ss_pred HHHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCC
Q 005858 192 VLREHFLMPRRLLMTGTPIQNNLSELWALMHFCMP 226 (673)
Q Consensus 192 ~l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p 226 (673)
.+.......++++|||||. |...+++.++.++.|
T Consensus 245 il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 245 IISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp HTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 4443226788999999995 556888888888765
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.78 E-value=4.6e-19 Score=193.72 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=85.5
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..+.++||||......+.+.+.|...++.+..++|. +|.++++.|+ .+...+|++|.+++.|
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~--------------~g~~~vLVaT~v~e~G 230 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCK--------------SEKWDFVITTDISEMG 230 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHH--------------HSCCSEEEECGGGGTS
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhc--------------CCCCeEEEECchHHcC
Confidence 346799999999999999999999999999999997 6788999998 3344578899999999
Q ss_pred cCCCCCCe-----------------eEeeCCCCCcchHHHHhHhhhccCCcC-eEEEE
Q 005858 423 LNLVAADT-----------------VIFYEQDWNPQVDKQALQRAHRIGQMN-HVLSI 462 (673)
Q Consensus 423 iNL~~a~~-----------------VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~Vy 462 (673)
||++ .++ ||+++.|.++..+.|+.||++|.|... .+.+|
T Consensus 231 iDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 231 ANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 9998 544 578899999999999999999999654 34333
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.77 E-value=4.6e-17 Score=185.42 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
..|..+|...+..+...+.++||||......+.|...|...|+++..++|.....+|.-+...|+ .
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~--------------~ 480 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--------------K 480 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--------------T
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC--------------C
Confidence 45677777777776677889999999999999999999999999999999987777654444454 1
Q ss_pred CcEEEEEeccccccccCCC--------CCCeeEeeCCCCCcchHHHHhHhhhccCCcC
Q 005858 408 DAFVFMISTRAGGVGLNLV--------AADTVIFYEQDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
+ -++++|+.+|.|+|+. +..+||.+|.|-++..|.|++||++|.|..=
T Consensus 481 g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 481 G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred C--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 1 3689999999999999 7789999999999999999999999999753
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.76 E-value=2.8e-18 Score=187.91 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=77.2
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..+.++||||......+.+.+.|...|+++..++| ++|.++++.|+ .+..-+|++|.+++.|
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~--------------~g~~~vLVaT~v~e~G 236 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIK--------------QKKPDFILATDIAEMG 236 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC----------------------CCCSEEEESSSTTCC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhc--------------CCCceEEEECChhhee
Confidence 35789999999999999999999999999999999 46888999998 3344578899999999
Q ss_pred cCCCCCCeeEe-------------------eCCCCCcchHHHHhHhhhccCC
Q 005858 423 LNLVAADTVIF-------------------YEQDWNPQVDKQALQRAHRIGQ 455 (673)
Q Consensus 423 iNL~~a~~VI~-------------------~D~~wnp~~~~Qa~gR~~RiGQ 455 (673)
||++ +++||+ ++.|.++..+.|+.||++|.|.
T Consensus 237 iDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 237 ANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp TTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred eccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 9999 999985 8999999999999999999854
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.76 E-value=2.1e-18 Score=197.14 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=95.0
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..+.++||||......+.+...|...++.+..++|. +|.++++.|+ .+...+|++|.+++.|
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~--------------~g~~~VLVaTdv~e~G 469 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCK--------------NGDWDFVITTDISEMG 469 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGG--------------TCCCSEEEECGGGGTT
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHH--------------CCCceEEEECchhhcc
Confidence 468899999999999999999999999999999994 7899999998 3344568899999999
Q ss_pred cCCCCCCeeEe--------------------eCCCCCcchHHHHhHhhhccCCcCeEEEEEEec-CCCHHHHHHHHHHHH
Q 005858 423 LNLVAADTVIF--------------------YEQDWNPQVDKQALQRAHRIGQMNHVLSINLVT-EHTVEEVIMRRAERK 481 (673)
Q Consensus 423 iNL~~a~~VI~--------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~-~~TiEe~i~~~~~~K 481 (673)
||++ +++||+ ||.|.++..+.|+.||++|.|..+.+ .|.|+. ...-|...+...+.+
T Consensus 470 IDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~-ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 470 ANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD-EYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp CCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE-EEEECSCCCCCCTTBHHHHHHH
T ss_pred eeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE-EEEEEecCChhHHHHHHHHHHH
Confidence 9999 999997 66888899999999999999543332 233332 122244445555555
Q ss_pred HHHH
Q 005858 482 LRLS 485 (673)
Q Consensus 482 ~~l~ 485 (673)
..+.
T Consensus 548 ~~l~ 551 (673)
T 2wv9_A 548 ILLD 551 (673)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 4443
No 51
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=1.2e-17 Score=167.48 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=110.9
Q ss_pred CcCCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 30 EFGVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 30 p~~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
......+|+|||.+++..++. +.+++++.+||+|||.+++.++..+ .+++|||||. .++.||.+++.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 445567999999999987654 3569999999999999999888654 4679999998 7889999999984
Q ss_pred CCCCe-EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc
Q 005858 109 TPKLE-VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 109 ~p~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s 187 (673)
+.. +..+.|... ...+++|+||+.+......+. ..|++|||||+|++.+..
T Consensus 157 --~~~~v~~~~g~~~------------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~- 208 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK------------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES- 208 (237)
T ss_dssp --CGGGEEEESSSCB------------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT-
T ss_pred --CCCeEEEEeCCCC------------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH-
Confidence 455 777776542 135899999999977665442 358999999999997754
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCCCHH
Q 005858 188 VLYNVLREHFLMPRRLLMTGTPIQNNLS 215 (673)
Q Consensus 188 ~~~~~l~~~~~~~~rllLTGTPi~N~~~ 215 (673)
++.+...+...++++|||||.+++-.
T Consensus 209 --~~~i~~~~~~~~~l~LSATp~r~D~~ 234 (237)
T 2fz4_A 209 --YVQIAQMSIAPFRLGLTATFEREDGR 234 (237)
T ss_dssp --HHHHHHTCCCSEEEEEEESCC-----
T ss_pred --HHHHHHhccCCEEEEEecCCCCCCCC
Confidence 23343457888999999999877543
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.75 E-value=2.1e-18 Score=189.72 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=84.5
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+.++||||+.....+.+.+.|...|+.+..++|.+. .++++.|+ .+...+|++|.+++.||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~--------------~g~~~vLVaT~v~~~Gi 248 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTK--------------LTDWDFVVTTDISEMGA 248 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGG--------------SSCCSEEEECGGGGSSC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhc--------------cCCceEEEECCHHHhCc
Confidence 4679999999999999999999999999999999754 57889998 44456788999999999
Q ss_pred CCCCCCeeEeeC--------------------CCCCcchHHHHhHhhhccCCcC
Q 005858 424 NLVAADTVIFYE--------------------QDWNPQVDKQALQRAHRIGQMN 457 (673)
Q Consensus 424 NL~~a~~VI~~D--------------------~~wnp~~~~Qa~gR~~RiGQ~k 457 (673)
|+.. +.||.+| .|.++..+.|++||++|.|...
T Consensus 249 Dip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 249 NFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 9999 9999998 8899999999999999999743
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.74 E-value=5.9e-18 Score=186.49 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=86.4
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.+.++||||......+.+.+.|...|+.+..++|. +|..+++.|+ .+..-+|++|.+++.||
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~--------------~g~~~iLVaT~v~~~Gi 250 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCK--------------NGDWDFVITTDISEMGA 250 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSS--------------SCCCSEEEESSCC---C
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhcc--------------CCCceEEEECChHHhCe
Confidence 47799999999999999999999999999999985 6778889997 34455688999999999
Q ss_pred CCCCCCeeEe--------------------eCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 424 NLVAADTVIF--------------------YEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 424 NL~~a~~VI~--------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
|++. ++||. ||+|.++..+.|++||++|.|.... ..|.|+...
T Consensus 251 Dip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 251 NFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp CCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 9999 99998 7899999999999999999996332 344555554
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.73 E-value=3.6e-16 Score=177.83 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=98.0
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..+|...+......|..|||||......+.|...|...|+++..++|.....++.-+...|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr-------------- 507 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR-------------- 507 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS--------------
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--------------
Confidence 345777888888877778899999999999999999999999999999999977666655556665
Q ss_pred CCcEEEEEeccccccccCCCCC----------------------------------------------------CeeEee
Q 005858 407 NDAFVFMISTRAGGVGLNLVAA----------------------------------------------------DTVIFY 434 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a----------------------------------------------------~~VI~~ 434 (673)
.+ .++++|..+|.|+|+... .+||.+
T Consensus 508 ~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~t 585 (922)
T 1nkt_A 508 RG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGT 585 (922)
T ss_dssp TT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEEC
T ss_pred CC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEec
Confidence 22 468899999999999863 499999
Q ss_pred CCCCCcchHHHHhHhhhccCCc
Q 005858 435 EQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 435 D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
|.|-++..|.|+.||++|.|..
T Consensus 586 e~pes~riy~qr~GRTGRqGdp 607 (922)
T 1nkt_A 586 ERHESRRIDNQLRGRSGRQGDP 607 (922)
T ss_dssp SCCSSHHHHHHHHHTSSGGGCC
T ss_pred cCCCCHHHHHHHhcccccCCCC
Confidence 9999999999999999999975
No 55
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=2.8e-17 Score=191.28 Aligned_cols=314 Identities=16% Similarity=0.105 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHCCCCeEEE
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFTPKLEVLR 116 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~p~~~v~~ 116 (673)
.+.|..++..++.. +..+++..++|+|||.+.-.++.......+....++|++|.. +..++.+.+.+... ..+..
T Consensus 95 ~~~q~~~i~~~l~~---~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~ 170 (773)
T 2xau_A 95 VHAQRDEFLKLYQN---NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD-VKLGE 170 (773)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT-CCBTT
T ss_pred hHHHHHHHHHHHhC---CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC-Cchhh
Confidence 44666666555554 567899999999999954444333221111123488999974 45677776765542 11111
Q ss_pred EeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc-ccccCCCccEEEEcCCcc-ccCccc--HHHHH
Q 005858 117 YVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ-GFLSQIPWCYTIIDEAQR-LKNPSS--VLYNV 192 (673)
Q Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~-~~l~~~~~~~vIvDEaH~-~KN~~s--~~~~~ 192 (673)
..|.... .........+++++|++.+.+.. ....-.++++||+||+|. .-+... ...+.
T Consensus 171 ~vG~~i~-----------------~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~ 233 (773)
T 2xau_A 171 EVGYSIR-----------------FENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQ 233 (773)
T ss_dssp TEEEEET-----------------TEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHH
T ss_pred eecceec-----------------cccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHH
Confidence 1110000 00001235689999999886542 222344679999999995 322221 12222
Q ss_pred HHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 005858 193 LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRR 272 (673)
Q Consensus 193 l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr 272 (673)
+....+....+++|||+- ..++. .++... +...... |
T Consensus 234 l~~~~~~~~iIl~SAT~~---~~~l~---~~~~~~--------------~vi~v~g-----------------------r 270 (773)
T 2xau_A 234 VVKRRPDLKIIIMSATLD---AEKFQ---RYFNDA--------------PLLAVPG-----------------------R 270 (773)
T ss_dssp HHHHCTTCEEEEEESCSC---CHHHH---HHTTSC--------------CEEECCC-----------------------C
T ss_pred HHHhCCCceEEEEecccc---HHHHH---HHhcCC--------------CcccccC-----------------------c
Confidence 333234567899999982 22222 121100 0000000 0
Q ss_pred hhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcH-HHHHHHHHHHH-hCCCeEEE
Q 005858 273 TKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKL-VVLDLLLKKLY-NSGHRVLL 350 (673)
Q Consensus 273 ~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl-~~l~~ll~~~~-~~g~kvlI 350 (673)
.. .+. ...++.. ...+. ..+..++..+. ..+.++||
T Consensus 271 ~~-pv~---~~~~~~~--------------------------------------~~~~~~~~l~~l~~~~~~~~~g~iLV 308 (773)
T 2xau_A 271 TY-PVE---LYYTPEF--------------------------------------QRDYLDSAIRTVLQIHATEEAGDILL 308 (773)
T ss_dssp CC-CEE---EECCSSC--------------------------------------CSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred cc-ceE---EEEecCC--------------------------------------chhHHHHHHHHHHHHHHhcCCCCEEE
Confidence 00 000 0000000 00111 11222222222 25789999
Q ss_pred EecCchHHHHHHHHHHh-----------CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 351 FAQMTQTLDILQDFLEL-----------RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 351 Fsq~~~~ld~l~~~L~~-----------~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
|+......+.+.+.|.. .++.+..++|+++.++|..+++.|...+ ++.+..-+|++|.++
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~---------~~~g~~kVlVAT~ia 379 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH---------NGRPGRKVVISTNIA 379 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS---------SSSCCEEEEEECTHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc---------CCCCceEEEEeCcHH
Confidence 99999999888888874 5788999999999999999999996210 014466788999999
Q ss_pred ccccCCCCCCeeEeeCC------------------CCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 420 GVGLNLVAADTVIFYEQ------------------DWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 420 g~GiNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
+.|||+.+.++||.++. |.++..+.||.||++|. ++=.+|+|+++..
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~ 444 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEA 444 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHH
Confidence 99999999999999766 88999999999999997 4456778876543
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.73 E-value=2.6e-16 Score=178.68 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=100.5
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..+|...+..+...|..|||||......+.|...|...|+++..++|.....+|.-+...|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr-------------- 488 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGY-------------- 488 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTS--------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--------------
Confidence 456888888888877778899999999999999999999999999999999987777766667776
Q ss_pred CCcEEEEEeccccccccCCCCC-------------------------------------CeeEeeCCCCCcchHHHHhHh
Q 005858 407 NDAFVFMISTRAGGVGLNLVAA-------------------------------------DTVIFYEQDWNPQVDKQALQR 449 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a-------------------------------------~~VI~~D~~wnp~~~~Qa~gR 449 (673)
.+ .++++|..+|.|+|+... .+||.+|.|-++..|.|+.||
T Consensus 489 ~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GR 566 (853)
T 2fsf_A 489 PA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGR 566 (853)
T ss_dssp TT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTT
T ss_pred CC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccc
Confidence 22 488999999999999863 599999999999999999999
Q ss_pred hhccCCcC
Q 005858 450 AHRIGQMN 457 (673)
Q Consensus 450 ~~RiGQ~k 457 (673)
++|.|..=
T Consensus 567 TGRqGd~G 574 (853)
T 2fsf_A 567 SGRQGDAG 574 (853)
T ss_dssp SSGGGCCE
T ss_pred cccCCCCe
Confidence 99999753
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.73 E-value=1.2e-17 Score=157.60 Aligned_cols=134 Identities=19% Similarity=0.386 Sum_probs=114.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
.+.|+..|..++.. ..+.++||||+....++.+.+.|...|+++..++|+++..+|..+++.|+ .
T Consensus 19 ~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-------------~ 83 (163)
T 2hjv_A 19 EENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK-------------R 83 (163)
T ss_dssp GGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-------------T
T ss_pred hHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-------------c
Confidence 57799999998886 46779999999999999999999999999999999999999999999998 2
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHHH
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAER 480 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~~ 480 (673)
+ ...+|++|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+ +.|++.. |...+.....
T Consensus 84 g-~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 84 G-EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp T-SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred C-CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 3 334678899999999999999999999999999999999999999987554 4455543 4445544443
No 58
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=2e-17 Score=157.46 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=106.7
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
.+.|+..|..++... .+.++||||++...++.+...|...|+++..++|+++..+|..+++.|+ .
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~-------------~ 79 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK-------------D 79 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-------------T
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH-------------C
Confidence 567888898888864 6679999999999999999999999999999999999999999999998 2
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
+.. .+|++|++++.|+|++.+++||+||+|||+..+.|++||++|.|+...+.+
T Consensus 80 g~~-~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 80 FQR-RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp TSC-SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred CCC-cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 333 467788999999999999999999999999999999999999998655443
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.72 E-value=3e-17 Score=186.43 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=178.8
Q ss_pred HHhcCCCCeEEECCCcchHHHHH-HHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHH
Q 005858 50 RRYLLGVNVLLGDEMGLGKTLQA-ISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNI 127 (673)
Q Consensus 50 ~~~~~~~~~iLade~GlGKTl~a-i~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~ 127 (673)
.....+..+|+..++|+|||++. +.++..+.. ....+||++|. .+..|+.+++. ...+. |.+...
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~----~~~v~-~~~~~l----- 247 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAV----- 247 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTS-----
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhc----CCcee-Eecccc-----
Confidence 34455788999999999999985 556655543 23468999997 56678877765 33332 333210
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc-ccccCCCccEEEEcCCccccCcccH-HHHHHHhhc--CCCcEE
Q 005858 128 RRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ-GFLSQIPWCYTIIDEAQRLKNPSSV-LYNVLREHF--LMPRRL 203 (673)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~-~~l~~~~~~~vIvDEaH~~KN~~s~-~~~~l~~~~--~~~~rl 203 (673)
.........+.++++..+.... ....-.++++||+||||++ +.... ....+...+ .....+
T Consensus 248 --------------~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~i 312 (618)
T 2whx_A 248 --------------KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI 312 (618)
T ss_dssp --------------SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEE
T ss_pred --------------eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEE
Confidence 0112333456667777665321 1122346799999999998 32221 122222222 456789
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 005858 204 LMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHL 283 (673)
Q Consensus 204 lLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~ 283 (673)
++||||-... .+ |... .. . .+ .+. .
T Consensus 313 l~SAT~~~~~-~~------~~~~--------------~~----~---------------------~~-----~v~----~ 337 (618)
T 2whx_A 313 FMTATPPGST-DP------FPQS--------------NS----P---------------------IE-----DIE----R 337 (618)
T ss_dssp EECSSCTTCC-CS------SCCC--------------SS----C---------------------EE-----EEE----C
T ss_pred EEECCCchhh-hh------hhcc--------------CC----c---------------------ee-----eec----c
Confidence 9999984331 10 0000 00 0 00 000 0
Q ss_pred cCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH
Q 005858 284 MLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQD 363 (673)
Q Consensus 284 ~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~ 363 (673)
..|. .+.. .++..+...+.++||||......+.+.+
T Consensus 338 ~~~~-----------------------------------------~~~~---~ll~~l~~~~~~~LVF~~s~~~a~~l~~ 373 (618)
T 2whx_A 338 EIPE-----------------------------------------RSWN---TGFDWITDYQGKTVWFVPSIKAGNDIAN 373 (618)
T ss_dssp CCCS-----------------------------------------SCCS---SSCHHHHHCCSCEEEECSSHHHHHHHHH
T ss_pred cCCH-----------------------------------------HHHH---HHHHHHHhCCCCEEEEECChhHHHHHHH
Confidence 0010 0000 0111222357799999999999999999
Q ss_pred HHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCee------------
Q 005858 364 FLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTV------------ 431 (673)
Q Consensus 364 ~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~V------------ 431 (673)
.|...|+++..++|. +|.++++.|+ .+...+|++|++++.|||+. +++|
T Consensus 374 ~L~~~g~~v~~lhg~----~R~~~l~~F~--------------~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 374 CLRKSGKRVIQLSRK----TFDTEYPKTK--------------LTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp HHHHTTCCEEEECTT----THHHHTTHHH--------------HSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred HHHHcCCcEEEEChH----HHHHHHHhhc--------------CCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 999999999999984 7888999997 33445788999999999996 8887
Q ss_pred --------EeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC-CHHHHHHHHHHHHHH
Q 005858 432 --------IFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH-TVEEVIMRRAERKLR 483 (673)
Q Consensus 432 --------I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~-TiEe~i~~~~~~K~~ 483 (673)
|++|.|-++..+.||+||++|.|..+.. .|.|++.. .-|...+..++.+..
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~~~~~~d~~~l~~le~~i~ 494 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSGDPLKNDEDHAHWTEAKML 494 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECSCCCCCCTTCHHHHHHHHH
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEccCCchhhHHHHHHHHhHhc
Confidence 7777788889999999999999864433 45555521 223344455555443
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=160.67 Aligned_cols=125 Identities=21% Similarity=0.328 Sum_probs=95.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
.+.|+..|..++... ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+.
T Consensus 29 ~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~------------- 94 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS------------- 94 (185)
T ss_dssp GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-------------
T ss_pred cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-------------
Confidence 577888888888874 357899999999999999999999999999999999999999999999982
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
+... +|++|+++++|+|++.++.||+||+|||+..+.|++||++|.|+... ++.|++..
T Consensus 95 g~~~-vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 95 GKSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp TSSS-EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred CCCe-EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 3333 67788999999999999999999999999999999999999997654 44455543
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=3.2e-15 Score=171.30 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=104.3
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCc
Q 005858 330 KLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDA 409 (673)
Q Consensus 330 Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~ 409 (673)
++..+...+......+.++||||......+.|.++|...|+++..++|.++..+|..+++.|+ .+.
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~--------------~g~ 495 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLR--------------LGK 495 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH--------------HTS
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHh--------------cCC
Confidence 344444555556677899999999999999999999999999999999999999999999998 233
Q ss_pred EEEEEeccccccccCCCCCCeeEeeCC-----CCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 410 FVFMISTRAGGVGLNLVAADTVIFYEQ-----DWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 410 ~vlL~st~agg~GiNL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
..+|++|.+++.|+|++.++.||++|. ++++..+.|++||++|.+ +-.++.|+...+
T Consensus 496 ~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 496 YDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred eEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 457889999999999999999999998 899999999999999962 334566776654
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=5.5e-16 Score=193.00 Aligned_cols=321 Identities=16% Similarity=0.140 Sum_probs=187.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHH-HCC--C
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAK-FTP--K 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k-~~p--~ 111 (673)
.+.|.|.+++.-++. .+.+++++.+||+|||+++...+....... ..+.+|+|+|. ++..+-.+++.+ +.+ +
T Consensus 926 ~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 377899999876544 367899999999999998865554333333 23458999996 677777777754 433 5
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccC----CCccEEEEcCCccccCccc
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQ----IPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~----~~~~~vIvDEaH~~KN~~s 187 (673)
.++..+.|+......... +.+++|+|++.+......... ....+||+||+|.+.....
T Consensus 1002 ~~V~~ltGd~~~~~~~~~------------------~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg 1063 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLLG------------------KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 1063 (1724)
T ss_dssp CCEEECCSCHHHHHHHHH------------------HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTH
T ss_pred CEEEEEECCCCcchhhcC------------------CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCC
Confidence 678888887654322211 158999999987433221111 2468999999999976433
Q ss_pred HHHHHHHh-------hc-CCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHH
Q 005858 188 VLYNVLRE-------HF-LMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFT 259 (673)
Q Consensus 188 ~~~~~l~~-------~~-~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 259 (673)
.....+.. .. ...+.++||||- . |..|+-..+. ....+. .. |..
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl-~-N~~dla~WL~---~~~~~~-~~----~~~------------------ 1115 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSL-S-NAKDVAHWLG---CSATST-FN----FHP------------------ 1115 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCB-T-THHHHHHHHT---CCSTTE-EE----CCG------------------
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCC-C-CHHHHHHHhC---CCCCCe-EE----eCC------------------
Confidence 32222111 11 234678999993 2 3444443321 110000 00 000
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCccCCCccc--ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHH
Q 005858 260 SLKGILSAFMLRRTKQKLVECGHLMLPPLTE--ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLL 337 (673)
Q Consensus 260 ~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e--~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~l 337 (673)
+ ..|...+ +.......+...+... ...+...
T Consensus 1116 ----------------~-------~RPvpL~~~i~~~~~~~~~~~~~~~------------------------~~~~~~~ 1148 (1724)
T 4f92_B 1116 ----------------N-------VRPVPLELHIQGFNISHTQTRLLSM------------------------AKPVYHA 1148 (1724)
T ss_dssp ----------------G-------GCSSCEEEEEEEECCCSHHHHHHTT------------------------HHHHHHH
T ss_pred ----------------C-------CCCCCeEEEEEeccCCCchhhhhhh------------------------cchHHHH
Confidence 0 0010000 0000000000000000 0001112
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHh----------------------------------CCCcEEEEeCCcCHHH
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLEL----------------------------------RKYSYERLDGSIRAEE 383 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~----------------------------------~g~~~~~i~G~~~~~~ 383 (673)
+.. ...++.+||||..+...+.+...|.. -...+..+||+++..+
T Consensus 1149 i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~ 1227 (1724)
T 4f92_B 1149 ITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPME 1227 (1724)
T ss_dssp HHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHH
T ss_pred HHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHH
Confidence 222 24566788888776655443332210 0234788999999999
Q ss_pred HHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eC------CCCCcchHHHHhHhhhcc
Q 005858 384 RFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YE------QDWNPQVDKQALQRAHRI 453 (673)
Q Consensus 384 R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D------~~wnp~~~~Qa~gR~~Ri 453 (673)
|..+.+.|. .+..-+|++|.+++.|||+++-..||. || .+.++..+.|++||++|.
T Consensus 1228 R~~VE~lF~--------------~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1228 RRLVEQLFS--------------SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp HHHHHHHHH--------------HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred HHHHHHHHH--------------CCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 999999998 334456778889999999997666552 32 256889999999999999
Q ss_pred CCcCeEEEEEEecCC
Q 005858 454 GQMNHVLSINLVTEH 468 (673)
Q Consensus 454 GQ~k~V~Vy~lv~~~ 468 (673)
|....-.++.++...
T Consensus 1294 g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1294 LQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTCSCEEEEEEEEGG
T ss_pred CCCCceEEEEEecch
Confidence 987766666665543
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.71 E-value=5.9e-17 Score=184.76 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=94.3
Q ss_pred eEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCC
Q 005858 347 RVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLV 426 (673)
Q Consensus 347 kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~ 426 (673)
..+|||.....++.+.+.|...++.+..++|+++.++|..+++.|+++ .+..-+|++|.+++.|||+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~------------~g~~~VLVATdi~e~GlDi- 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDP------------NDPCKILVATDAIGMGLNL- 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCT------------TSSCCEEEECGGGGSSCCC-
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHcc------------CCCeEEEEeCcHHHCCcCc-
Confidence 447888888899999999999999999999999999999999999942 2445678899999999999
Q ss_pred CCCeeEeeCC--------------CCCcchHHHHhHhhhccCCc-CeEEEEEEecC
Q 005858 427 AADTVIFYEQ--------------DWNPQVDKQALQRAHRIGQM-NHVLSINLVTE 467 (673)
Q Consensus 427 ~a~~VI~~D~--------------~wnp~~~~Qa~gR~~RiGQ~-k~V~Vy~lv~~ 467 (673)
.+++||+++. |+++..+.|+.||++|.|+. .+-.+|.+...
T Consensus 389 ~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 389 SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 9999999999 88999999999999999986 44667776544
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.70 E-value=4.8e-17 Score=183.52 Aligned_cols=261 Identities=20% Similarity=0.131 Sum_probs=168.0
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMY 132 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~ 132 (673)
.+..+++..++|+|||.+....+.. ....+||++|. .+..|+.+.+.+... ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 4557899999999999877655432 13369999998 456888888876652 33333444321
Q ss_pred HHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCC-c--EEEEecCC
Q 005858 133 EHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMP-R--RLLMTGTP 209 (673)
Q Consensus 133 ~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~-~--rllLTGTP 209 (673)
.....++++.|++.+... ..+...++++||+||||.+--........+...++.. . .+++||||
T Consensus 294 ------------~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~ 360 (666)
T 3o8b_A 294 ------------ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360 (666)
T ss_dssp ------------ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ------------ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCC
Confidence 123578999999998643 3344557899999999876322212122233324332 2 57789998
Q ss_pred CCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcc
Q 005858 210 IQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRGKIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLT 289 (673)
Q Consensus 210 i~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~ 289 (673)
-.. +.. ..+ . ...+ .++...
T Consensus 361 ~~~----------------i~~--------~~p-------~-----------------------i~~v------~~~~~~ 380 (666)
T 3o8b_A 361 PGS----------------VTV--------PHP-------N-----------------------IEEV------ALSNTG 380 (666)
T ss_dssp TTC----------------CCC--------CCT-------T-----------------------EEEE------ECBSCS
T ss_pred Ccc----------------ccc--------CCc-------c-----------------------eEEE------eecccc
Confidence 541 000 000 0 0000 000000
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCC
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRK 369 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g 369 (673)
.+ ........+ . ...+.++|||++.....+.+.+.|...|
T Consensus 381 ~i-----------------------~~~~~~~~l---------------~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g 420 (666)
T 3o8b_A 381 EI-----------------------PFYGKAIPI---------------E--AIRGGRHLIFCHSKKKCDELAAKLSGLG 420 (666)
T ss_dssp SE-----------------------EETTEEECG---------------G--GSSSSEEEEECSCHHHHHHHHHHHHTTT
T ss_pred hh-----------------------HHHHhhhhh---------------h--hccCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence 00 000000000 0 1157899999999999999999999999
Q ss_pred CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeE----------eeC----
Q 005858 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVI----------FYE---- 435 (673)
Q Consensus 370 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI----------~~D---- 435 (673)
+++..++|++++++ |. .++. .+|++|++++.|||+. ++.|| +||
T Consensus 421 ~~v~~lHG~l~q~e-------r~-------------~~~~-~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 421 INAVAYYRGLDVSV-------IP-------------TIGD-VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp CCEEEECTTSCGGG-------SC-------------SSSC-EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred CcEEEecCCCCHHH-------HH-------------hCCC-cEEEECChHHccCCCC-CcEEEecCcccccccccccccc
Confidence 99999999999764 33 1222 7889999999999986 99888 566
Q ss_pred -------CCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCH
Q 005858 436 -------QDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTV 470 (673)
Q Consensus 436 -------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~Ti 470 (673)
.|-++..+.||+||++| |.. .. |.|++....
T Consensus 479 ~gl~~~~~P~s~~syiQRiGRtGR-g~~-G~--i~lvt~~e~ 516 (666)
T 3o8b_A 479 FTIETTTVPQDAVSRSQRRGRTGR-GRR-GI--YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCS-SSC-EE--EEESCCCCB
T ss_pred cccccccCcCCHHHHHHHhccCCC-CCC-CE--EEEEecchh
Confidence 78888999999999999 653 33 778876643
No 65
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=8.1e-17 Score=152.11 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=104.3
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCC
Q 005858 329 GKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408 (673)
Q Consensus 329 ~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~ 408 (673)
.|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+ .+.
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-------------~g~ 80 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR-------------SGS 80 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-------------TTS
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-------------cCC
Confidence 3888888888874 6789999999999999999999999999999999999999999999998 233
Q ss_pred cEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 409 AFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 409 ~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
. .+|++|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+ +.|++...
T Consensus 81 ~-~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~ 138 (165)
T 1fuk_A 81 S-RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNED 138 (165)
T ss_dssp C-SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTT
T ss_pred C-EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchH
Confidence 3 4677889999999999999999999999999999999999999976544 55666654
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=1.6e-15 Score=188.98 Aligned_cols=325 Identities=15% Similarity=0.147 Sum_probs=190.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHH-HHHhhhcC-------CCCCCEEEEECc-ccHHHHHHHHH
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISF-LSYLKFSQ-------MSPGPFLVLCPL-SVTDGWVSEMA 106 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~-i~~l~~~~-------~~~~~~LIV~P~-sll~~W~~E~~ 106 (673)
.|.+.|..++.-++. .+.+.+++.+||+|||+.+... +..+.... ...+.+|+|+|. ++..+-.++|.
T Consensus 79 ~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 588999998876554 3789999999999999987544 44443321 123458999995 77788888887
Q ss_pred HHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccccc----CCCccEEEEcCCc
Q 005858 107 KFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLS----QIPWCYTIIDEAQ 180 (673)
Q Consensus 107 k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~----~~~~~~vIvDEaH 180 (673)
+.+. ++++..+.|+..... ....+.+|+|+|++.+..-..... -....+||+||+|
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~------------------~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH 217 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK------------------EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH 217 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC------------------TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG
T ss_pred HHHhhCCCEEEEEECCCCCCc------------------cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch
Confidence 6543 567777877643211 011247899999998743211110 1246899999999
Q ss_pred cccCcccHHHHH--------HHhhcCCCcEEEEecCCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhccCCCcchhh
Q 005858 181 RLKNPSSVLYNV--------LREHFLMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLNQFLSTFKDAVHSSSAPKRG 252 (673)
Q Consensus 181 ~~KN~~s~~~~~--------l~~~~~~~~rllLTGTPi~N~~~El~~ll~~l~p~~~~~~~~f~~~f~~~~~~~~~~~~~ 252 (673)
.+.+.-...... +...-...++++||||- + |+.|+-. ||.... . ...|. ....
T Consensus 218 ~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl-~-N~~dvA~---wL~~~~----~--~~~~~-----~~~~--- 278 (1724)
T 4f92_B 218 LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL-P-NYEDVAT---FLRVDP----A--KGLFY-----FDNS--- 278 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC-T-THHHHHH---HTTCCH----H--HHEEE-----CCGG---
T ss_pred hcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc-C-CHHHHHH---HhCCCC----C--CCeEE-----ECCC---
Confidence 886532221111 11112345789999993 2 3444332 221100 0 00000 0000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhcCCccCCCcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHH
Q 005858 253 KIKEQFTSLKGILSAFMLRRTKQKLVECGHLMLPPLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLV 332 (673)
Q Consensus 253 ~~~~~~~~L~~~l~~~~lrr~k~~v~~~~~~~lp~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~ 332 (673)
.+|.-+. ..+ +..++.. .... ..
T Consensus 279 ------------~RPvpL~---~~~-----~~~~~~~---~~~~----------------------------------~~ 301 (1724)
T 4f92_B 279 ------------FRPVPLE---QTY-----VGITEKK---AIKR----------------------------------FQ 301 (1724)
T ss_dssp ------------GCSSCEE---EEC-----CEECCCC---HHHH----------------------------------HH
T ss_pred ------------CccCccE---EEE-----eccCCcc---hhhh----------------------------------hH
Confidence 0000000 000 0000000 0000 00
Q ss_pred HHHHHHHH-H--HhCCCeEEEEecCchHHHHHHHHHH----hC---------------------------------CCcE
Q 005858 333 VLDLLLKK-L--YNSGHRVLLFAQMTQTLDILQDFLE----LR---------------------------------KYSY 372 (673)
Q Consensus 333 ~l~~ll~~-~--~~~g~kvlIFsq~~~~ld~l~~~L~----~~---------------------------------g~~~ 372 (673)
.+...+.. + ...++.+||||..+...+.+.+.|. .. ...+
T Consensus 302 ~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gv 381 (1724)
T 4f92_B 302 IMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF 381 (1724)
T ss_dssp HHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTE
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCE
Confidence 01111111 1 1245689999988765544444332 11 2347
Q ss_pred EEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEe----eCCC------CCcch
Q 005858 373 ERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIF----YEQD------WNPQV 442 (673)
Q Consensus 373 ~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~----~D~~------wnp~~ 442 (673)
...||+++.++|..+.+.|+ .+..-+|++|.+++.||||++.+.||. ||+. .++..
T Consensus 382 a~HHagL~~~~R~~vE~~F~--------------~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~ 447 (1724)
T 4f92_B 382 AIHHAGMTRVDRTLVEDLFA--------------DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 447 (1724)
T ss_dssp EEECSSSCTHHHHHHHHHHH--------------TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH--------------CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHH
Confidence 78899999999999999998 445567888999999999998777763 5543 47899
Q ss_pred HHHHhHhhhccCCcCeEEEEEEecCCCHH
Q 005858 443 DKQALQRAHRIGQMNHVLSINLVTEHTVE 471 (673)
Q Consensus 443 ~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiE 471 (673)
+.|++|||+|.|....-.++.+...+..+
T Consensus 448 ~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 448 ILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp HHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred HHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 99999999999987666666666665443
No 67
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=155.14 Aligned_cols=123 Identities=22% Similarity=0.305 Sum_probs=103.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
.+.|+..|..++. ..+.++||||++...++.+...|...|+++..++|+++.++|..+++.|++
T Consensus 39 ~~~K~~~L~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~------------- 102 (191)
T 2p6n_A 39 EEAKMVYLLECLQ---KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE------------- 102 (191)
T ss_dssp GGGHHHHHHHHHT---TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHH---hCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-------------
Confidence 4567777766665 356799999999999999999999999999999999999999999999982
Q ss_pred CCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 407 NDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
+.. .+|++|+++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|++..
T Consensus 103 g~~-~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 103 GKK-DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp TSC-SEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CCC-EEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 333 4678899999999999999999999999999999999999999997644 4455543
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.68 E-value=3e-15 Score=166.75 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=97.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCC
Q 005858 327 ASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGG 406 (673)
Q Consensus 327 ~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~ 406 (673)
...|..+|...+......|.+|||||......+.|...|...|+++..++|.....+|.-+...|.
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~-------------- 521 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ-------------- 521 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--------------
Confidence 345788888888887778999999999999999999999999999999999855444433334443
Q ss_pred CCcEEEEEeccccccccCCC--------CCCeeEeeCCCCCcchHHHHhHhhhccCCcCe
Q 005858 407 NDAFVFMISTRAGGVGLNLV--------AADTVIFYEQDWNPQVDKQALQRAHRIGQMNH 458 (673)
Q Consensus 407 ~~~~vlL~st~agg~GiNL~--------~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 458 (673)
.+ .++++|..+|.|+|+. +..+||.++.|-++..+.|++||++|.|..=.
T Consensus 522 ~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 522 KG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp TT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred CC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 12 3799999999999997 66799999999999999999999999997543
No 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.67 E-value=2.7e-14 Score=163.71 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
.++...+...+......+.++||||......+.|.++|...|+++..++|+++..+|..+++.|. .
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~--------------~ 487 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLR--------------L 487 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHH--------------T
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhh--------------c
Confidence 34555565666666678899999999999999999999999999999999999999999999998 3
Q ss_pred CcEEEEEeccccccccCCCCCCeeEeeCC-----CCCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQ-----DWNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~a~~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
+...+|++|.+++.|+|++.++.||++|. ++++..+.|++||++|.|. -.++.|+...+
T Consensus 488 g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 488 GHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred CCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 33457889999999999999999999998 8999999999999999863 24555666654
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=7.3e-16 Score=152.48 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---PK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p~ 111 (673)
.|+|||.+++..+.. +.++++..+||+|||++++..+...........++|||||. .++.||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 499999999987765 47899999999999999887776554333333479999997 78899999999986 47
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc-c--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP-S-- 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~-~-- 186 (673)
.++..+.|.......... +. ...++++|+|++.+.... ..+.-..+++||+||||++... .
T Consensus 112 ~~v~~~~g~~~~~~~~~~-----~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 177 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEV-----LK---------KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 177 (220)
T ss_dssp CCEEEESCCSCHHHHHHH-----HH---------HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHH
T ss_pred ceEEEEeCCCChHHHHHH-----Hh---------cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcH
Confidence 888888887554332211 11 123589999999886542 2233456899999999998542 1
Q ss_pred cHHHHHHHhhcC-CCcEEEEecCCCC
Q 005858 187 SVLYNVLREHFL-MPRRLLMTGTPIQ 211 (673)
Q Consensus 187 s~~~~~l~~~~~-~~~rllLTGTPi~ 211 (673)
......+.. ++ ..+++++||||-.
T Consensus 178 ~~~~~i~~~-~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 178 RDVQEIFRM-TPHEKQVMMFSATLSK 202 (220)
T ss_dssp HHHHHHHHT-SCSSSEEEEEESCCCT
T ss_pred HHHHHHHHh-CCCcCeEEEEEeecCH
Confidence 122233332 33 4568999999843
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.66 E-value=9.1e-16 Score=150.05 Aligned_cols=157 Identities=20% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc---CCCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS---QMSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~---~~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
..|+|||.+++..+.. +.++++..+||+|||++++..+...... ......+||+||. .++.||.+++.++.+
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 3689999999987765 5789999999999999866655444221 1234569999998 788999999999998
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS-- 186 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~-- 186 (673)
..++..+.|........... . ..++++|+|++.+.... ..+.-..+++||+||||++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~--------------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 162 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEAL-L--------------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFE 162 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHH-H--------------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCH
T ss_pred cceEEEEECCCChHHHHHHh-h--------------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchH
Confidence 88888888765543322211 1 13689999999886542 23334568999999999975432
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCC
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi 210 (673)
......+...-...+.+++||||-
T Consensus 163 ~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 163 EEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp HHHHHHHHTSCTTSEEEEECSSCC
T ss_pred HHHHHHHHhCCccCeEEEEEEecC
Confidence 233344433223456799999983
No 72
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=148.36 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=102.3
Q ss_pred CcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCC
Q 005858 329 GKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGND 408 (673)
Q Consensus 329 ~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~ 408 (673)
.|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+ ++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~-------------~g- 83 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR-------------DG- 83 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH-------------TT-
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH-------------cC-
Confidence 3777777777653 5679999999999999999999999999999999999999999999998 23
Q ss_pred cEEEEEeccccccccCCCCCCeeEeeCCC------CCcchHHHHhHhhhccCCcCeEEEEEEecCCC
Q 005858 409 AFVFMISTRAGGVGLNLVAADTVIFYEQD------WNPQVDKQALQRAHRIGQMNHVLSINLVTEHT 469 (673)
Q Consensus 409 ~~vlL~st~agg~GiNL~~a~~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~T 469 (673)
...+|++|+++++|+|++.+++||+||+| +++..+.|++||++|.|+. -.++.|+..+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 33467889999999999999999999999 6778999999999999964 45566776654
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.65 E-value=8.8e-16 Score=151.15 Aligned_cols=136 Identities=20% Similarity=0.236 Sum_probs=114.1
Q ss_pred ccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhh
Q 005858 324 QNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403 (673)
Q Consensus 324 ~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~ 403 (673)
....+.|+..|..++.. ..+.++||||+.....+.+...|...|+.+..++|+++..+|..+++.|+
T Consensus 12 ~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~----------- 78 (212)
T 3eaq_A 12 PAPVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFR----------- 78 (212)
T ss_dssp ECCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHH-----------
T ss_pred eCCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-----------
Confidence 34467899999999885 46789999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCCCHHHHHHHHHH
Q 005858 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEHTVEEVIMRRAE 479 (673)
Q Consensus 404 ~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~TiEe~i~~~~~ 479 (673)
.+..-+|++|.++++|||++.+++||+||+||++..+.|++||++|.|+.. .+|.|++.. |...+..+.
T Consensus 79 ---~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~ 147 (212)
T 3eaq_A 79 ---QGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALE 147 (212)
T ss_dssp ---SSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHH
T ss_pred ---CCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHH
Confidence 334456889999999999999999999999999999999999999999764 445566554 444444443
No 74
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.45 E-value=1.5e-17 Score=157.98 Aligned_cols=118 Identities=18% Similarity=0.301 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGN 407 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~ 407 (673)
+.|+..|..++.. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+ .
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~--------------~ 78 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT--------------E 78 (170)
Confidence 5677778887775 35679999999999999999999999999999999999999999999998 3
Q ss_pred CcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEE
Q 005858 408 DAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLS 461 (673)
Q Consensus 408 ~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 461 (673)
+...+|++|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+.+
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 334578899999999999999999999999999999999999999998766543
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=150.97 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=103.5
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEEECc-ccHHH-HHHHHH
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVLCPL-SVTDG-WVSEMA 106 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV~P~-sll~~-W~~E~~ 106 (673)
....+|+|||.+++..++. +.++++..++|+|||++++.++..+.... ...+++|||||. .++.| |.+++.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4457899999999987764 47899999999999999988876554321 234679999998 66688 999999
Q ss_pred HHCC-CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcccc--------ccCCCccEEEEc
Q 005858 107 KFTP-KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGF--------LSQIPWCYTIID 177 (673)
Q Consensus 107 k~~p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~--------l~~~~~~~vIvD 177 (673)
++.+ ...+..+.|............ . .++++|+||+.+...... +....|++||+|
T Consensus 105 ~~~~~~~~v~~~~g~~~~~~~~~~~~-~--------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiD 169 (216)
T 3b6e_A 105 PFLKKWYRVIGLSGDTQLKISFPEVV-K--------------SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 169 (216)
T ss_dssp HHHTTTSCEEECCC---CCCCHHHHH-H--------------HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEET
T ss_pred HHhccCceEEEEeCCcccchhHHhhc-c--------------CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEE
Confidence 9875 467777777653322111111 1 268999999999765332 334578999999
Q ss_pred CCccccCcccH--HH-HHHHhhc-------------CCCcEEEEecC
Q 005858 178 EAQRLKNPSSV--LY-NVLREHF-------------LMPRRLLMTGT 208 (673)
Q Consensus 178 EaH~~KN~~s~--~~-~~l~~~~-------------~~~~rllLTGT 208 (673)
|||++...... .. ..+...+ ...+.++||||
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 170 ECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 99998643221 11 1111110 45678999998
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.63 E-value=2.9e-15 Score=148.10 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC---
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--- 110 (673)
..|+|||.+++..+.. +.++++..+||+|||++++..+............+||+||. .+..||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4689999999988776 47899999999999998666554443333334569999997 788999999998864
Q ss_pred ---CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 111 ---KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 111 ---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
...+..+.|........ ......++++|+|++.+.... ..+....+++||+||||++.+.
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKAL---------------EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM 165 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTT---------------CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT
T ss_pred cccceEEEEEeCCCCHHHHH---------------HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhh
Confidence 46677777765432210 011236799999999886532 2233346789999999998643
Q ss_pred c--cHHHHHHHhhcC-CCcEEEEecCCCCCCHHH
Q 005858 186 S--SVLYNVLREHFL-MPRRLLMTGTPIQNNLSE 216 (673)
Q Consensus 186 ~--s~~~~~l~~~~~-~~~rllLTGTPi~N~~~E 216 (673)
. ......+.. ++ ..+++++|||+ ++.+.+
T Consensus 166 ~~~~~l~~i~~~-~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 166 GFITDVDQIAAR-MPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp TCHHHHHHHHHT-SCTTCEEEEEESCC-CGGGHH
T ss_pred ChHHHHHHHHHh-CCcccEEEEEecCC-CHHHHH
Confidence 2 233344433 43 45689999997 444444
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=7e-15 Score=143.67 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=109.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC---C
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP---K 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p---~ 111 (673)
.|+|||.+++..+.. +.++++..+||+|||++++..+...........++|||||. .++.||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 689999999987764 57899999999999998776555443333334469999997 677999999998863 6
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc--cccCCCccEEEEcCCccccCccc--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG--FLSQIPWCYTIIDEAQRLKNPSS-- 187 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~--~l~~~~~~~vIvDEaH~~KN~~s-- 187 (673)
..+..+.|.......... ....++++|+|++.+..... .+.-..+++||+||||++.....
T Consensus 101 ~~~~~~~g~~~~~~~~~~---------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 165 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMR---------------LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQ 165 (206)
T ss_dssp CCEEEECSSSCHHHHHHH---------------TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHH
T ss_pred ceEEEEeCCccHHHHHHh---------------cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHH
Confidence 778878877654433221 12357899999999855432 23334689999999999865332
Q ss_pred HHHHHHHhhcC-CCcEEEEecCCC
Q 005858 188 VLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 188 ~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
.....+.. ++ ..+++++|||+-
T Consensus 166 ~l~~i~~~-~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 166 IMEDIILT-LPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHHHHH-SCTTCEEEEEESCCC
T ss_pred HHHHHHHh-CCccceEEEEEeeCC
Confidence 22333332 43 567899999983
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.61 E-value=1.1e-14 Score=145.21 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=108.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---PK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p~ 111 (673)
.|+|||.+++..+.. +.++++..+||+|||++.+..+...........++|||||. .+..||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 499999999987654 57899999999999998654443332223334569999997 78899999999986 36
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc---
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS--- 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~--- 186 (673)
+++..+.|+......... ...++++|+|++.+.... ..+....+++||+||||++.+..
T Consensus 122 ~~~~~~~g~~~~~~~~~~----------------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 185 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR----------------LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQ 185 (230)
T ss_dssp CCEEEECTTSCHHHHHHH----------------TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSH
T ss_pred ceEEEEeCCCCHHHHHHh----------------ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchH
Confidence 788888886544332111 124799999999986542 22333467899999999985432
Q ss_pred cHHHHHHHhhcC-CCcEEEEecCC
Q 005858 187 SVLYNVLREHFL-MPRRLLMTGTP 209 (673)
Q Consensus 187 s~~~~~l~~~~~-~~~rllLTGTP 209 (673)
......+.. ++ ..+++++|||+
T Consensus 186 ~~~~~i~~~-~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 186 EQINWIYSS-LPASKQMLAVSATY 208 (230)
T ss_dssp HHHHHHHHH-SCSSCEEEEEESCC
T ss_pred HHHHHHHHh-CCCCCeEEEEEecc
Confidence 233334443 44 45679999996
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.59 E-value=1.1e-14 Score=145.86 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+++..++. +.++++..+||+|||++++..+............+|||||. .+..||.+++.++.. +.
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 499999999987764 57899999999999998766555443333344579999997 788999999999875 45
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccC--cccH
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKN--PSSV 188 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN--~~s~ 188 (673)
.+..+.|.......... .....++++|+|++.+.... ..+....+++||+||||++.. ....
T Consensus 128 ~~~~~~g~~~~~~~~~~--------------l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~ 193 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQK--------------LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQ 193 (237)
T ss_dssp CEEEECC---------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHH
T ss_pred eEEEEECCCchHHHHHH--------------HhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHH
Confidence 66666665543222111 01234789999999876532 223344689999999998743 3334
Q ss_pred HHHHHHhhcCCCcEEEEecCCC
Q 005858 189 LYNVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 189 ~~~~l~~~~~~~~rllLTGTPi 210 (673)
+...+...-...+.+++|||+-
T Consensus 194 l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 194 IYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHHHSCTTCEEEEECSSCC
T ss_pred HHHHHHhCCCCCeEEEEEEecC
Confidence 4455544223456789999984
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.59 E-value=1.6e-14 Score=143.06 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=104.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHH-HHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAIS-FLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP-- 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~-~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p-- 110 (673)
..|+|||.+++..+.. +.++++..+||+|||++++. ++..+ ........+||+||. .+..||.+++.++.+
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHC-CTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHH-hccCCCceEEEEECCHHHHHHHHHHHHHHhccc
Confidence 3699999999987764 47899999999999998544 44444 233344579999997 778999999999875
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCcc--
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNPS-- 186 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~~-- 186 (673)
+..+..+.|......... ....++++|+|++.+.... ..+....+++||+||||++.+..
T Consensus 110 ~~~~~~~~g~~~~~~~~~----------------~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 173 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAE----------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 173 (224)
T ss_dssp CCCEEEECC--------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred CceEEEEeCCcchHHHHh----------------cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhH
Confidence 566777777654322111 1123789999999986542 22334468999999999975432
Q ss_pred cHHHHHHHhhcCCCcEEEEecCCC
Q 005858 187 SVLYNVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 187 s~~~~~l~~~~~~~~rllLTGTPi 210 (673)
......+...-...+++++|||+-
T Consensus 174 ~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 174 EQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHHHHHHHSCTTCEEEEEESSCC
T ss_pred HHHHHHHHhCCccCeEEEEEeecC
Confidence 223344433223456799999984
No 81
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=145.15 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc----CCCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS----QMSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~----~~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
..|+|||.+++..+.. +.++++..+||+|||++++..+...... ......+|||||. .+..||.+++.++.
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4689999999987764 5789999999999999877655433221 1223458999997 78899999999998
Q ss_pred CC--CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc---cccCCCccEEEEcCCccccC
Q 005858 110 PK--LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 110 p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~---~l~~~~~~~vIvDEaH~~KN 184 (673)
+. ..+..+.|.......... + ..++++|+|++.+..... .+....+++||+||||++.+
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~-----~-----------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER-----I-----------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD 185 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH-----H-----------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH
T ss_pred CCCCeeEEEEECCCCHHHHHHh-----C-----------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc
Confidence 54 677777776654332211 0 136899999999865432 23445789999999999865
Q ss_pred cc--cHHHHHHHhhcC-CCcEEEEecCCC
Q 005858 185 PS--SVLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 185 ~~--s~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
.. ......+.. ++ ..+++++|||+-
T Consensus 186 ~~~~~~~~~i~~~-~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 186 MGFADTMNAVIEN-LPKKRQTLLFSATQT 213 (236)
T ss_dssp TTTHHHHHHHHHT-SCTTSEEEEEESSCC
T ss_pred CCcHHHHHHHHHh-CCCCCeEEEEEeeCC
Confidence 33 333344443 44 455799999973
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.59 E-value=8.8e-15 Score=147.75 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--KL 112 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~~ 112 (673)
.|+|||.+++..+.. +.++++..+||+|||++++..+............+||+||. .+..||.+++.++.. +.
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999987764 57899999999999998776655443344344569999997 678999999998864 56
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc---cccCCCccEEEEcCCccccCcc--c
Q 005858 113 EVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQRLKNPS--S 187 (673)
Q Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~---~l~~~~~~~vIvDEaH~~KN~~--s 187 (673)
.+..+.|........... ...++++|+|++.+..... .+.-..+++||+||||++.+.. .
T Consensus 141 ~~~~~~g~~~~~~~~~~~---------------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~ 205 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL---------------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 205 (249)
T ss_dssp CEEEECTTSCHHHHHHHH---------------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred eEEEEECCCChHHHHHHh---------------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHH
Confidence 777777765443322111 1247999999999865432 2334468899999999986533 2
Q ss_pred HHHHHHHhhcC-CCcEEEEecCCC
Q 005858 188 VLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 188 ~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
.....+.. ++ ..+++++|||+-
T Consensus 206 ~l~~i~~~-~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 206 EVDKILKV-IPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHHHHS-SCSSSEEEEEESSCC
T ss_pred HHHHHHHh-CCCCCeEEEEeccCC
Confidence 23344433 43 466799999974
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=1.3e-14 Score=149.88 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=107.9
Q ss_pred ccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhh
Q 005858 324 QNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSE 403 (673)
Q Consensus 324 ~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~ 403 (673)
....+.|+..|..++... .+.++||||......+.+...|...|+.+..++|++++.+|..+++.|+
T Consensus 9 ~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~----------- 75 (300)
T 3i32_A 9 PAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFR----------- 75 (300)
T ss_dssp ECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHH-----------
T ss_pred ECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh-----------
Confidence 344578999999998874 4789999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEeccccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCcCeEEEEEEecCC
Q 005858 404 AGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTEH 468 (673)
Q Consensus 404 ~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy~lv~~~ 468 (673)
++..-+|++|.++++|||++.+++||+||+||++..+.|+.||++|.|+.- .+|.|++..
T Consensus 76 ---~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 76 ---QGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp ---HTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred ---cCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 334457889999999999999999999999999999999999999999763 455666654
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.54 E-value=5.4e-14 Score=142.21 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=107.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC---------CCCCCEEEEECc-ccHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ---------MSPGPFLVLCPL-SVTDGWVSE 104 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~---------~~~~~~LIV~P~-sll~~W~~E 104 (673)
..|+|||.+++..++. +.++++..+||+|||++++..+....... .....+|||||. .+..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 3689999999987765 47899999999999998776554443222 122469999997 788999999
Q ss_pred HHHHCC--CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCc
Q 005858 105 MAKFTP--KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQ 180 (673)
Q Consensus 105 ~~k~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH 180 (673)
+.++.. ...+..+.|........... ...++++|+|++.+.... ..+.-..+++||+||||
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 184 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIREV---------------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHHH---------------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHh---------------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHH
Confidence 999874 35666666665443322210 124799999999986542 22333467899999999
Q ss_pred cccCcc--cHHHHHHHh-hcC---CCcEEEEecCCC
Q 005858 181 RLKNPS--SVLYNVLRE-HFL---MPRRLLMTGTPI 210 (673)
Q Consensus 181 ~~KN~~--s~~~~~l~~-~~~---~~~rllLTGTPi 210 (673)
++.+.. ......+.. ... ...++++||||-
T Consensus 185 ~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 185 RMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 975432 233344432 112 345899999973
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=135.86 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc------CCCCCCEEEEECc-ccHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS------QMSPGPFLVLCPL-SVTDGWVSEMAK 107 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~------~~~~~~~LIV~P~-sll~~W~~E~~k 107 (673)
.+|+|+|.+++..+.. +.++++..++|+|||+.++..+...... ......+|||||. .+..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 3799999999987654 5789999999999999876554433211 1234458999997 677999999999
Q ss_pred HC-CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccC
Q 005858 108 FT-PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 108 ~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN 184 (673)
+. ++..+..+.|.......... + ...++++|+|++.+.... ..+.-..+++||+||||++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIED-----I----------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HCCTTCCEEEECC------CHHH-----H----------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHH-----h----------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhc
Confidence 86 56777777766543322211 1 113789999999986542 223334578999999999765
Q ss_pred cc--cHHHHHHHhhcCCCcEEEEecCC
Q 005858 185 PS--SVLYNVLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 185 ~~--s~~~~~l~~~~~~~~rllLTGTP 209 (673)
.. ......+.........+++|||+
T Consensus 182 ~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 182 MEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp TTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred cchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 32 23344444322345678999995
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=137.35 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=103.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhh-cCCCCCCEEEEECc-ccHHHHHHHHHHHCCC--
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKF-SQMSPGPFLVLCPL-SVTDGWVSEMAKFTPK-- 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~-~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~-- 111 (673)
.|+|||.+++..+.. +.++++..+||+|||++++..+..... .......+|||||. .+..||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 599999999977654 578999999999999986655443322 22233458999997 6889999999999754
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc----cccCCCccEEEEcCCccccCc--
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG----FLSQIPWCYTIIDEAQRLKNP-- 185 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~----~l~~~~~~~vIvDEaH~~KN~-- 185 (673)
..+..+.|...... ........+++++|+|++.+..... .+.-..+++||+||||++...
T Consensus 127 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--------------KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp CCEECCCHHHHHHT--------------TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC-
T ss_pred ceEEEEecCccHHH--------------HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccc
Confidence 44444443322111 0111234568999999999865432 233446789999999998542
Q ss_pred ---ccHHHHHHHhhc-CCCcEEEEecCC
Q 005858 186 ---SSVLYNVLREHF-LMPRRLLMTGTP 209 (673)
Q Consensus 186 ---~s~~~~~l~~~~-~~~~rllLTGTP 209 (673)
.......+.... ...++++||||+
T Consensus 193 ~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 193 TGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp -CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred ccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 122223333211 235679999997
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.45 E-value=9.9e-13 Score=131.98 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=105.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-----CCCCCEEEEECc-ccHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-----MSPGPFLVLCPL-SVTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-----~~~~~~LIV~P~-sll~~W~~E~~k~~ 109 (673)
.|+|+|.+++..+.. +.++++..++|+|||+..+..+....... .....+|||||. .+..||.+.+.++.
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 499999999987765 57899999999999999765554433221 234458999997 67799999998875
Q ss_pred --CCCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc--ccccCCCccEEEEcCCccccCc
Q 005858 110 --PKLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ--GFLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 110 --p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~--~~l~~~~~~~vIvDEaH~~KN~ 185 (673)
.+..+..+.|........... . .+++++|+|++.+.... ..+.-..+++||+||||++-+.
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~-----~----------~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDL-----E----------RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHH-----H----------HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHT
T ss_pred hhcCceEEEEECCCChHHHHHHh-----c----------CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhh
Confidence 356777777765443332221 1 13689999999886542 2233346789999999997553
Q ss_pred c--cHHHHHHHhhc-CCCcEEEEecCC
Q 005858 186 S--SVLYNVLREHF-LMPRRLLMTGTP 209 (673)
Q Consensus 186 ~--s~~~~~l~~~~-~~~~rllLTGTP 209 (673)
. ......+.. + +....+++|||+
T Consensus 192 ~~~~~~~~i~~~-~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 192 GFEPQIRKIVDQ-IRPDRQTLMWSATW 217 (242)
T ss_dssp TCHHHHHHHHTT-SCSSCEEEEEESCC
T ss_pred CcHHHHHHHHHh-CCccceEEEEEeec
Confidence 2 223333333 4 345678999996
No 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.9e-13 Score=134.84 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=105.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC----CCCCCEEEEECc-ccHHHHHHHHHHHCC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ----MSPGPFLVLCPL-SVTDGWVSEMAKFTP 110 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~----~~~~~~LIV~P~-sll~~W~~E~~k~~p 110 (673)
.|+|+|.+++..+.. +.++++..++|+|||+.++..+....... .....+|||||. .++.||.+++.++..
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 389999999987766 47899999999999998665544332221 123458999997 788999999999875
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccc---cccCCCccEEEEcCCccccCc
Q 005858 111 --KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQG---FLSQIPWCYTIIDEAQRLKNP 185 (673)
Q Consensus 111 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~---~l~~~~~~~vIvDEaH~~KN~ 185 (673)
...+..+.|........... . .+++++|+|++.+..... .+.-..+++||+||||++-..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~-~--------------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL-G--------------NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH-H--------------HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT
T ss_pred hcCceEEEEECCCCHHHHHHHh-c--------------CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh
Confidence 35556666655433322211 1 126899999998865422 233345789999999997553
Q ss_pred c--cHHHHHHHhhcC-CCcEEEEecCCC
Q 005858 186 S--SVLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 186 ~--s~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
. ......+.. ++ ....+++||||-
T Consensus 217 ~~~~~l~~i~~~-~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 217 GFEEELKQIIKL-LPTRRQTMLFSATQT 243 (262)
T ss_dssp TCHHHHHHHHHH-SCSSSEEEEECSSCC
T ss_pred hHHHHHHHHHHh-CCCCCeEEEEEecCC
Confidence 2 233334433 43 456799999974
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.37 E-value=3e-11 Score=137.25 Aligned_cols=146 Identities=23% Similarity=0.201 Sum_probs=94.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH----HHHHHHHHHHCC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT----DGWVSEMAKFTP 110 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~k~~p 110 (673)
..++|-|..|+--|+. |. |....||.|||++++..+...... ...++||||+.-+ ..|...+.++.
T Consensus 78 ~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 3789999999865543 33 889999999999876555322222 2358999999655 45666666666
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHH----hcc-----ccccCC---CccEEEEcC
Q 005858 111 KLEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVL----MDQ-----GFLSQI---PWCYTIIDE 178 (673)
Q Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~----~~~-----~~l~~~---~~~~vIvDE 178 (673)
++++.+..|..... .+...+ .++|++.|+..+. .+. ..+... +..++||||
T Consensus 148 GLsv~~i~Gg~~~~--~r~~ay---------------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDE 210 (997)
T 2ipc_A 148 GLSVGVIQHASTPA--ERRKAY---------------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDE 210 (997)
T ss_dssp TCCEEECCTTCCHH--HHHHHH---------------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETT
T ss_pred CCeEEEEeCCCCHH--HHHHHc---------------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEec
Confidence 67777776654421 122111 2699999999884 111 123333 678999999
Q ss_pred CccccCcccHHHHHHHhhcCCCcEEEEecCCCCCCHHHHHHHH
Q 005858 179 AQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQNNLSELWALM 221 (673)
Q Consensus 179 aH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N~~~El~~ll 221 (673)
+|.+-- -.+..-+++|| |++.. ..+|..+
T Consensus 211 aDsmLi------------DeartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 211 VDSILI------------DEARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp HHHHTT------------SSTTSCEEEEE-SCSSC-HHHHHHH
T ss_pred hHHHHH------------hCCCCCeeeeC-CCccc-hHHHHHH
Confidence 996431 12233489999 88776 4555443
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.32 E-value=1.7e-10 Score=129.30 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=53.3
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKF 108 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~ 108 (673)
..++||+|.+.+.-+......+..+++..+||+|||+..+..+... ..+++|++|+ ++..||.+++.++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 3579999999987777766778899999999999998776555332 3679999997 6779999999875
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.30 E-value=1.9e-11 Score=126.63 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=102.3
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC---CC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT---PK 111 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~---p~ 111 (673)
.|+|+|..++..++.. .+.++|+..++|+|||+..+..+............+|||||. .+..|+.+.+.++. +.
T Consensus 114 ~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 114 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp SCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 5889999998655431 237899999999999998664433332222223358999997 67789888888775 56
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhcc---ccccCCCccEEEEcCCccccCc-c-
Q 005858 112 LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQ---GFLSQIPWCYTIIDEAQRLKNP-S- 186 (673)
Q Consensus 112 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~---~~l~~~~~~~vIvDEaH~~KN~-~- 186 (673)
..+....|..... .......+|+|+|++.+.... ..+.-..+.+||+||||++-.. .
T Consensus 192 ~~~~~~~~~~~~~------------------~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~ 253 (300)
T 3fmo_B 192 LKLAYAVRGNKLE------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (300)
T ss_dssp CCEEEESTTCCCC------------------TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTH
T ss_pred cEEEEEeCCccHh------------------hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCc
Confidence 7777776654211 112345789999999986544 2333346789999999997641 1
Q ss_pred cHHHHHHHhhcC-CCcEEEEecCCC
Q 005858 187 SVLYNVLREHFL-MPRRLLMTGTPI 210 (673)
Q Consensus 187 s~~~~~l~~~~~-~~~rllLTGTPi 210 (673)
......+...++ ....+++|||+-
T Consensus 254 ~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 254 QDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred HHHHHHHHHhCCCCCEEEEEeccCC
Confidence 122223333233 355789999974
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.78 E-value=2.2e-08 Score=99.64 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCC--CCCEEEEECcc-cHHHHHHHHHHHCCC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMS--PGPFLVLCPLS-VTDGWVSEMAKFTPK 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~--~~~~LIV~P~s-ll~~W~~E~~k~~p~ 111 (673)
..++++|.+++..+.. +...++..++|+|||.+...++......... ...+++++|.. +..+..+.+.+....
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 4579999999877655 5788999999999997665554433222221 22578888974 446666666654421
Q ss_pred ---CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccc-cCccc
Q 005858 112 ---LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRL-KNPSS 187 (673)
Q Consensus 112 ---~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~-KN~~s 187 (673)
..+. +.-.. .........+++|+|++.+...... .-.++++||+||||+. -+...
T Consensus 136 ~~~~~~g-~~~~~-------------------~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPGKSCG-YSVRF-------------------ESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTTSSEE-EEETT-------------------EEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHH
T ss_pred ccCceEE-Eeech-------------------hhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHH
Confidence 1111 11000 0001123468999999887654322 1345789999999983 22111
Q ss_pred H--HHHHHHhhcCCCcEEEEecCCC
Q 005858 188 V--LYNVLREHFLMPRRLLMTGTPI 210 (673)
Q Consensus 188 ~--~~~~l~~~~~~~~rllLTGTPi 210 (673)
. ..+.+....+..+.+++|||+-
T Consensus 195 ~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCC
Confidence 1 2233333345567899999974
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.74 E-value=2.8e-08 Score=111.67 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=92.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCC--C
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTP--K 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p--~ 111 (673)
+++||||.+.+.-+...+..+..+++..+||+|||+..+..+.. ...+++|++|+ .+..||.+++.++.. +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 47899999988877777777888999999999999988766544 23579999997 677999999987642 5
Q ss_pred CeEEEEeCChHH--------------------------------HHHHHHHHHH---HHHhh-hccCCCCCCCCCEEEec
Q 005858 112 LEVLRYVGEREQ--------------------------------RRNIRRTMYE---HVKEQ-SQMSNVSPLPFDVLLTT 155 (673)
Q Consensus 112 ~~v~~~~g~~~~--------------------------------~~~~~~~~~~---~~~~~-~~~~~~~~~~~dvvI~t 155 (673)
+++....|...- .......... ....+ ...........++||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 666666553210 0011100000 00000 00000011246999999
Q ss_pred HHHHHhcc--ccc-cCCCccEEEEcCCccccC
Q 005858 156 YDVVLMDQ--GFL-SQIPWCYTIIDEAQRLKN 184 (673)
Q Consensus 156 ye~l~~~~--~~l-~~~~~~~vIvDEaH~~KN 184 (673)
|..+..+. ..+ ......+||+||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99997652 112 123567899999999876
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.16 E-value=1.7e-06 Score=98.19 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHC--CC
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFT--PK 111 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~--p~ 111 (673)
+++||+|++.+.-+......+..+++..+||+|||+..+..+...... ...+++|++|+ ++..|+.+++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 467999999988777777778899999999999999887654333222 13568999997 67799999998764 35
Q ss_pred CeEEEEeC
Q 005858 112 LEVLRYVG 119 (673)
Q Consensus 112 ~~v~~~~g 119 (673)
++++...|
T Consensus 80 ~~~~~l~g 87 (620)
T 4a15_A 80 IRAIPMQG 87 (620)
T ss_dssp CCEEECCC
T ss_pred eEEEEEEC
Confidence 66666555
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.85 E-value=0.0002 Score=81.75 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHC
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFT 109 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~ 109 (673)
+...|-+.|++||..++.. ..-.|+..++|+|||.+.+.++..+... ..++||++|++ .+.+....+....
T Consensus 186 ~~~~LN~~Q~~AV~~al~~---~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALSQ---KELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp SSTTCCHHHHHHHHHHHHC---SSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHhcC---CCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 3467999999999887764 3457899999999999999999887653 35799999975 4577766665543
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.74 E-value=0.0003 Score=76.91 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCC-CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGV-NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~-~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~ 113 (673)
..|-+-|++++..+......+. ..+|....|+|||.++.+++..+...+. ..+++++|...... ++.... ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~---~l~~~~-~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKK---ILSKLS-GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHH---HHHHHH-SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHH---HHHhhh-ccc
Confidence 4689999999998876655444 6788899999999999999888865543 46899999876532 232211 111
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHH
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l 193 (673)
...++ ..+... . ........+.. ........+++|||||+|.+- ......+
T Consensus 98 ~~T~h--------------~~~~~~-~---~~~~~~~~~~~--------~~~~~~~~~~~iiiDE~~~~~---~~~~~~l 148 (459)
T 3upu_A 98 ASTIH--------------SILKIN-P---VTYEENVLFEQ--------KEVPDLAKCRVLICDEVSMYD---RKLFKIL 148 (459)
T ss_dssp EEEHH--------------HHHTEE-E---EECSSCEEEEE--------CSCCCCSSCSEEEESCGGGCC---HHHHHHH
T ss_pred hhhHH--------------HHhccC-c---ccccccchhcc--------cccccccCCCEEEEECchhCC---HHHHHHH
Confidence 11111 000000 0 00000001100 011122357999999999862 3345555
Q ss_pred HhhcCCCcEEEEecCCCCC
Q 005858 194 REHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 194 ~~~~~~~~rllLTGTPi~N 212 (673)
...+....++++.|-|-|.
T Consensus 149 ~~~~~~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 149 LSTIPPWCTIIGIGDNKQI 167 (459)
T ss_dssp HHHSCTTCEEEEEECTTSC
T ss_pred HHhccCCCEEEEECCHHHc
Confidence 5556667789999998773
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.66 E-value=0.00053 Score=77.88 Aligned_cols=161 Identities=20% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc-HHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV-TDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~k~~p~~~ 113 (673)
..|-+.|.+++..++. +...++..++|+|||.++..++..+... ...++||++|.+. +.+....+.+.. .+
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 4689999999987654 3567889999999999999888777532 3457999999854 455555555432 23
Q ss_pred EEEEeCChHH-----------HH---------HHH----------------HHHHHHHHhhhccCCCCCCCCCEEEecHH
Q 005858 114 VLRYVGEREQ-----------RR---------NIR----------------RTMYEHVKEQSQMSNVSPLPFDVLLTTYD 157 (673)
Q Consensus 114 v~~~~g~~~~-----------~~---------~~~----------------~~~~~~~~~~~~~~~~~~~~~dvvI~tye 157 (673)
++...+.... .. .++ ...+........ .......++|++|..
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~vI~~T~~ 328 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAE--RELLMNADVICCTCV 328 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHH--HHHHHTCSEEEEETG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH--HHHHhcCCEEEEcCh
Confidence 3222211000 00 000 000100000000 000113578888866
Q ss_pred HHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 158 VVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 158 ~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
.+.. ..+....|++||||||...-.+. .+........+++|-|-|-|-
T Consensus 329 ~~~~--~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 329 GAGD--PRLAKMQFRSILIDESTQATEPE-----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GGGC--GGGTTCCCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhcc--hhhhcCCCCEEEEecccccCcHH-----HHHHHHhcCCeEEEecChhcc
Confidence 5432 33556789999999997654332 222224445789999999874
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.65 E-value=0.00061 Score=76.35 Aligned_cols=132 Identities=17% Similarity=0.086 Sum_probs=83.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCCCCe
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTPKLE 113 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p~~~ 113 (673)
...|-+.|++++..+.. +...++.-..|+|||.++.+++..+... ..+++++||+........+.. ...
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~----~~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVT----GRT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHH----TSC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhh----ccc
Confidence 56799999999987653 4678899999999999988888777543 357899999876654443321 111
Q ss_pred EEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHH
Q 005858 114 VLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193 (673)
Q Consensus 114 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l 193 (673)
...+ ...+ .... + .+. ...-....+++|||||+|.+-. .....+
T Consensus 256 a~Ti--------------h~ll--------------~~~~-~--~~~--~~~~~~~~~dvlIIDEasml~~---~~~~~L 299 (574)
T 3e1s_A 256 ASTV--------------HRLL--------------GYGP-Q--GFR--HNHLEPAPYDLLIVDEVSMMGD---ALMLSL 299 (574)
T ss_dssp EEEH--------------HHHT--------------TEET-T--EES--CSSSSCCSCSEEEECCGGGCCH---HHHHHH
T ss_pred HHHH--------------HHHH--------------cCCc-c--hhh--hhhcccccCCEEEEcCccCCCH---HHHHHH
Confidence 1100 0000 0000 0 000 0111234689999999998742 344444
Q ss_pred HhhcCCCcEEEEecCCCCC
Q 005858 194 REHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 194 ~~~~~~~~rllLTGTPi~N 212 (673)
...++...+++|.|-|-|.
T Consensus 300 l~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 300 LAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp HTTSCTTCEEEEEECTTSC
T ss_pred HHhCcCCCEEEEEeccccc
Confidence 4446677899999999874
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.50 E-value=0.00098 Score=77.53 Aligned_cols=161 Identities=20% Similarity=0.297 Sum_probs=93.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH-HHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT-DGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~k~~p~~~ 113 (673)
..|-+.|++++..++. +.-.++...+|+|||.++..++..+... ...++||++|.... .+-...+.+.. .+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 5689999999987654 3567899999999999999888877532 34579999998644 55555554432 23
Q ss_pred EEEEeCChHH-----------HH---------HHHH----------------HHHHHHHhhhccCCCCCCCCCEEEecHH
Q 005858 114 VLRYVGEREQ-----------RR---------NIRR----------------TMYEHVKEQSQMSNVSPLPFDVLLTTYD 157 (673)
Q Consensus 114 v~~~~g~~~~-----------~~---------~~~~----------------~~~~~~~~~~~~~~~~~~~~dvvI~tye 157 (673)
++........ .. .++. ..+....... ........++|++|..
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~VI~~T~~ 504 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA--ERELLMNADVICCTCV 504 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHH--HHHHHHHCSEEEEETG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH--HHhhhccCCEEEEchh
Confidence 3222211000 00 0000 0000000000 0000012578888866
Q ss_pred HHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 158 VVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 158 ~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
.+.. ..+....|++||||||...-.+. .+...+....+++|-|-|-|-
T Consensus 505 ~~~~--~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 505 GAGD--PRLAKMQFRSILIDESTQATEPE-----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGGC--TTTTTCCCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhCC--hhhhcCCCCEEEEECCCCCCcHH-----HHHHHHhcCCeEEEecccccC
Confidence 5542 23556789999999997654322 222234456789999999873
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00085 Score=78.11 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc-HHHHHHHHHHHCCCCe
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV-TDGWVSEMAKFTPKLE 113 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~k~~p~~~ 113 (673)
..|-+.|.+++..++. +.-.++...+|+|||.++..++..+... ...++||++|... +.+....+.+.. .+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4688999999987653 3457889999999999998888776543 2357999999864 466666665543 23
Q ss_pred EEEEeCChH----------------------HHHHHHH-------------HHHHHHHhhhccCCCCCCCCCEEEecHHH
Q 005858 114 VLRYVGERE----------------------QRRNIRR-------------TMYEHVKEQSQMSNVSPLPFDVLLTTYDV 158 (673)
Q Consensus 114 v~~~~g~~~----------------------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~dvvI~tye~ 158 (673)
++....... ....+.. ..+....... ........++|++|...
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~--~~~~l~~a~VI~~T~~~ 508 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKT--EAEILNKADVVCCTCVG 508 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH--HHHHHHTCSEEEEETTG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH--HHHHhccCCEEEechhh
Confidence 332211100 0000000 0000000000 00001135788888766
Q ss_pred HHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 159 VLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 159 l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
+.. ..+.. .|++||||||..+-.+ +.+...+....+++|-|-|-|-
T Consensus 509 ~~~--~~L~~-~fd~viIDEA~q~~e~-----~~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 509 AGD--KRLDT-KFRTVLIDESTQASEP-----ECLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp GGC--TTCCS-CCSEEEETTGGGSCHH-----HHHHHHTTTBSEEEEEECTTSC
T ss_pred cCh--HHHhc-cCCEEEEECccccchH-----HHHHHHHhCCCEEEEEeCcccc
Confidence 542 23444 8999999999875332 1222334456789999999873
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.15 E-value=0.0095 Score=67.79 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECccc-HHHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLSV-TDGWVSEMAKF 108 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~sl-l~~W~~E~~k~ 108 (673)
..|-+.|+++|. ...+..++-...|+|||.+.+.-+.++... +..+..+|+|+++.. ..+..+.+.+.
T Consensus 8 ~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 468999999995 224567777789999999999988888765 334557999998744 45555556554
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.99 E-value=0.0042 Score=70.17 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcC-CCCCCEEEEECcccH-HHHHHHHHHHCCCCeEE
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQ-MSPGPFLVLCPLSVT-DGWVSEMAKFTPKLEVL 115 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~-~~~~~~LIV~P~sll-~~W~~E~~k~~p~~~v~ 115 (673)
-+.|+.++.-++. ++..++...+|+|||.++..++..+.... ....++++++|+... .+..+.+..+...+.+.
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999876653 46789999999999988887777665331 223468999998654 34434343321100000
Q ss_pred EEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHH--HHhccccccCCCccEEEEcCCccccCcccHHHHHH
Q 005858 116 RYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDV--VLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVL 193 (673)
Q Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~--l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l 193 (673)
... + .........-..++-.+... +... ......+++||||||+.+- .......+
T Consensus 227 ---~~~--~--------------~~~~~~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll 283 (608)
T 1w36_D 227 ---DEQ--K--------------KRIPEDASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLI 283 (608)
T ss_dssp ---SCC--C--------------CSCSCCCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHH
T ss_pred ---HHH--H--------------hccchhhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHH
Confidence 000 0 00000000000011111110 1111 1122368999999999663 22233344
Q ss_pred HhhcCCCcEEEEecCCCCCCHH
Q 005858 194 REHFLMPRRLLMTGTPIQNNLS 215 (673)
Q Consensus 194 ~~~~~~~~rllLTGTPi~N~~~ 215 (673)
. .++...+++|.|-|-|-.+-
T Consensus 284 ~-~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 284 D-ALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp H-TCCTTCEEEEEECTTSGGGT
T ss_pred H-hCCCCCEEEEEcchhhcCCC
Confidence 4 46777899999998776543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.40 E-value=0.042 Score=57.95 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=88.3
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHC--
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFT-- 109 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~-- 109 (673)
....|.|||+..+..+.. .+..++.-.=+.|||..+.+++.+..... ....+++++|.. ....+-+.+..+.
T Consensus 160 ~p~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp EECCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 346899999998876632 24478888899999998877776543332 334688999974 2222335554442
Q ss_pred -CC-CeE-EEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcc
Q 005858 110 -PK-LEV-LRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPS 186 (673)
Q Consensus 110 -p~-~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~ 186 (673)
|. +.. ....... ... ...+..+.+.+ .....+.....+++|+||+|.+++.
T Consensus 235 ~P~ll~~~~~~~~~~------------------~I~--f~nGs~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~- 288 (385)
T 2o0j_A 235 LPDFLQPGIVEWNKG------------------SIE--LDNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF- 288 (385)
T ss_dssp SCTTTSCCEEEECSS------------------EEE--ETTSCEEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTH-
T ss_pred ChHhhhhhhccCCcc------------------EEE--eCCCCEEEEEE-----CCCCCccCCCCCEEEechhhhcCCC-
Confidence 32 110 0000000 000 00011122221 1233445667899999999999873
Q ss_pred cHHHHHHHhhcC--CCcEEEEecCCCCCCHHHHHHHHHH
Q 005858 187 SVLYNVLREHFL--MPRRLLMTGTPIQNNLSELWALMHF 223 (673)
Q Consensus 187 s~~~~~l~~~~~--~~~rllLTGTPi~N~~~El~~ll~~ 223 (673)
.....++...+. ...++++++||-..+ -+|.+...
T Consensus 289 ~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 289 HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 233444443332 346888899997664 55655543
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.12 E-value=0.016 Score=61.95 Aligned_cols=108 Identities=21% Similarity=0.142 Sum_probs=70.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEeCChHHHHHHHHHHHHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYVGEREQRRNIRRTMYEHVK 136 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~g~~~~~~~~~~~~~~~~~ 136 (673)
.++....|+|||......+. .++.||++|. .+...|.+.+.+...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~-------------------------- 209 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASGI-------------------------- 209 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSC--------------------------
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCc--------------------------
Confidence 56888999999998766542 1467999997 566888877743210
Q ss_pred hhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCCCCC
Q 005858 137 EQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTPIQN 212 (673)
Q Consensus 137 ~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTPi~N 212 (673)
...-..-+.|++.+...........+++|||||+..+- ...+...+ ...++ .+++|.|-|-|-
T Consensus 210 ---------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~-~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 210 ---------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLV-EMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp ---------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHH-HHTTC-SEEEEEECTTSC
T ss_pred ---------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHH-HhCCC-CEEEEecCcccc
Confidence 00012336788887665554444568999999998652 22333333 32444 899999998763
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.09 E-value=0.06 Score=60.51 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=87.3
Q ss_pred CcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc-cHHHHHHHHHHHC--
Q 005858 33 VTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS-VTDGWVSEMAKFT-- 109 (673)
Q Consensus 33 ~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~k~~-- 109 (673)
....|.|||+..+..+.. .+..++.-.-|.|||..+..++.+..... ....+++++|.. ....+...+..+.
T Consensus 160 ~~~~l~p~Q~~i~~~l~~----~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH----CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHhhcc----ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 457899999998776522 34577888899999998876666554433 234689999963 3333445555554
Q ss_pred -CC-CeEEEEeCChHHHHHHHHHHHHHHHhhhccCCCCCCCCCEEEecHHHHHhccccccCCCccEEEEcCCccccCccc
Q 005858 110 -PK-LEVLRYVGEREQRRNIRRTMYEHVKEQSQMSNVSPLPFDVLLTTYDVVLMDQGFLSQIPWCYTIIDEAQRLKNPSS 187 (673)
Q Consensus 110 -p~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvI~tye~l~~~~~~l~~~~~~~vIvDEaH~~KN~~s 187 (673)
|. +.......... ... ...+..+...+ .+...+.....+++|+||+|.+++..
T Consensus 235 ~p~~~~~~~~~~~~~-----------------~i~--~~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~- 289 (592)
T 3cpe_A 235 LPDFLQPGIVEWNKG-----------------SIE--LDNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH- 289 (592)
T ss_dssp SCTTTSCCEEEECSS-----------------EEE--ETTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-
T ss_pred ChHhhccccccCCcc-----------------EEE--ecCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-
Confidence 32 11000000000 000 00011122111 11223345568999999999998742
Q ss_pred HHHHHHHhhcCC--CcEEEEecCCCCCCHHHHHHHH
Q 005858 188 VLYNVLREHFLM--PRRLLMTGTPIQNNLSELWALM 221 (673)
Q Consensus 188 ~~~~~l~~~~~~--~~rllLTGTPi~N~~~El~~ll 221 (673)
....++...+.. ..++++++||-.. .-+|.++
T Consensus 290 ~l~~~~~~~l~~~~~~~ii~isTP~~~--~~~y~~~ 323 (592)
T 3cpe_A 290 DSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIW 323 (592)
T ss_dssp HHHHHHHHHHSSSSCCEEEEEECCCTT--SHHHHHH
T ss_pred HHHHHHHHHhccCCCceEEEEeCCCCc--hhHHHHH
Confidence 444555443433 4688999999655 3344443
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.07 E-value=0.018 Score=54.32 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=27.3
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
-.++.-+||+|||..++..+..+...+ .+++++.|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 357888999999999988887664332 467888776
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.33 E-value=0.069 Score=51.30 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=26.7
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
++.-+||.|||..++..+..+... ..+++|+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 478899999999999888766433 35689988853
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.23 E-value=0.088 Score=54.11 Aligned_cols=44 Identities=11% Similarity=-0.058 Sum_probs=30.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
+.+.+|..++|+|||..+-+++..+... ..+++.+........+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAM 80 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHH
Confidence 3578999999999999998888777543 3455555443333333
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.19 E-value=0.028 Score=54.69 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
+.-.++.-+||.|||..++.++..+...+ .+++++.|.-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEecc
Confidence 34457788999999999998887775433 4578887753
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.14 E-value=0.058 Score=51.11 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.2
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.++.-+||+|||..++..+..+... ...++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 5678899999999999888766433 3568888876
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.03 E-value=0.13 Score=53.16 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHhcCCC---CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 37 LKPHQVEGLSWLIRRYLLGV---NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~---~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
++|+|.+.+..+...+..+. ..++..+.|+|||..+..++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 68999999988887766554 3688899999999999999988853
No 112
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.46 E-value=0.099 Score=59.00 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=61.1
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe-cccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS-TRAGGV 421 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s-t~agg~ 421 (673)
..++.++||..+...++.+.+.+. .+..- ...+++..+|..++++|. . +..|++.. .....+
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-------------~~~vL~~v~~gsf~E 508 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-------------DHGTIFAVSGGRLSE 508 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-------------SCCEEEEETTSCC--
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-------------CCcEEEEEecCceec
Confidence 445678888887778888777665 23332 333444568999999997 2 22244443 358999
Q ss_pred ccCCCC--CCeeEeeCCCCCc-------------------c----------hHHHHhHhhhccCCcCeEEEE
Q 005858 422 GLNLVA--ADTVIFYEQDWNP-------------------Q----------VDKQALQRAHRIGQMNHVLSI 462 (673)
Q Consensus 422 GiNL~~--a~~VI~~D~~wnp-------------------~----------~~~Qa~gR~~RiGQ~k~V~Vy 462 (673)
|||+.+ +..||+...|+-+ . ...|++||+.|--+.+.|.+.
T Consensus 509 GiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 509 GINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp ------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEE
T ss_pred cccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEE
Confidence 999996 8899999888632 1 125788888776666665443
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.32 E-value=0.068 Score=54.37 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCC-CCCEEEEECcc
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLCPLS 96 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~-~~~~LIV~P~s 96 (673)
.+.+|..++|+|||..+-+++..+...+.. ..+++.+.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 357999999999999999888877544322 33555554433
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.14 E-value=0.094 Score=50.93 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=26.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
-++..+||.|||..++..+..... ....++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467789999999988887765542 34568888775
No 115
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.18 Score=53.19 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=36.3
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
..+|.+|..++|+|||+.|-+++..+ ..|++.|.+..++..|.-|-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchH
Confidence 35789999999999999999999877 35788887777776664433
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.83 E-value=0.69 Score=42.66 Aligned_cols=43 Identities=21% Similarity=0.108 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHh-----cCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRY-----LLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~-----~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+.|.+++..+.... ..+.+.+|.-+.|+|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468888887776443 2356788999999999999998888775
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.50 E-value=0.18 Score=47.59 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=26.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
-++..+||+|||...+-.+..+...+ ..++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 46788999999987777766654433 568888876
No 118
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.42 E-value=0.25 Score=50.54 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=25.5
Q ss_pred CccEEEEcCCcccc-C-cccHHHHHHHhhcCCCcEEEEecCCCC
Q 005858 170 PWCYTIIDEAQRLK-N-PSSVLYNVLREHFLMPRRLLMTGTPIQ 211 (673)
Q Consensus 170 ~~~~vIvDEaH~~K-N-~~s~~~~~l~~~~~~~~rllLTGTPi~ 211 (673)
...+||+||+|.+. . ....+.+.+.. .....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~-~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEA-YSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHH-HGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHh-CCCCcEEEEEeCCcc
Confidence 56789999999985 2 22233344433 345567778777643
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.45 E-value=0.16 Score=49.16 Aligned_cols=40 Identities=13% Similarity=-0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhc--CCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 42 VEGLSWLIRRYL--LGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 42 ~~gv~~l~~~~~--~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
...+..+..... .+.+.+|..+.|+|||..+-+++..+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444443332 3567899999999999999888877653
No 120
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.29 E-value=0.88 Score=46.25 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHH
Q 005858 41 QVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSY 78 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~ 78 (673)
|.+.+..+......+. ..++..+.|+|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555555444443 5788999999999999888764
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.28 E-value=0.9 Score=48.77 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..+.+|..++|+|||..+-++...+.... ...+++.+-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH
Confidence 34689999999999999988887775432 2334455433
No 122
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.26 E-value=0.24 Score=49.62 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHh------------cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 37 LKPHQVEGLSWLIRRY------------LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~------------~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
-.+.+++.+..++... ..+.+.+|..++|+|||..+-+++..+ ..+++.+....+
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~ 87 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSEL 87 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHH
Confidence 3556666654443321 345678999999999999998887665 345565554443
No 123
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.20 E-value=0.25 Score=50.74 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+.+|.-++|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 468999999999999998888765 3456666554444333
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.19 E-value=0.86 Score=42.88 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
++.....+...+... ...+.+|..+.|+|||..+-.++..+.
T Consensus 22 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 22 QDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555554443331 223589999999999999988887663
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.18 E-value=0.45 Score=45.50 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
++...+.+...+..-......+|.-+.|+|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5566666655444422223578999999999999888877664
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.01 E-value=0.28 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.+|.-+.|+|||..+-+++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999998887764
No 127
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.91 E-value=1.6 Score=44.50 Aligned_cols=44 Identities=5% Similarity=-0.093 Sum_probs=30.8
Q ss_pred cHHHHHHHH-HHHHHhc--CCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 38 KPHQVEGLS-WLIRRYL--LGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 38 ~~~Q~~gv~-~l~~~~~--~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
|+-|...+. ++..... .+.+.+|.-++|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666554 3333332 3446789999999999999999988854
No 128
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.84 E-value=0.38 Score=50.73 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..+.+|..++|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 4578999999999999998887654 3566666665555444
No 129
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.32 E-value=0.9 Score=43.52 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=25.6
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
-++.-+||.|||...+-.+..+... ...++|+.|.-
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAI 66 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 4678899999998888777555433 24578887753
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.30 E-value=0.85 Score=47.50 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHHhcC---CCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 37 LKPHQVEGLSWLIRRYLL---GVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~---~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
-++.+.+.+...+..+.. ....+|.-+.|+|||..+-.++..+..
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 366677666544444322 335789999999999999888877643
No 131
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.00 E-value=0.28 Score=51.17 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
..+.+|.-++|+|||..+-+++..+ ..+++.|...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSS 118 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHH
Confidence 3578999999999999999888876 2455555443
No 132
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.98 E-value=0.45 Score=49.01 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHhcCC--CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 45 LSWLIRRYLLG--VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 45 v~~l~~~~~~~--~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+..+......+ .+.+|..+.|+|||..+-+++..+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444444444 4589999999999999988887764
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.90 E-value=0.24 Score=50.88 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
.+.+|.-++|+|||..+-+++..+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 568899999999999999888766 23455655554443
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.75 E-value=1 Score=44.13 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
..+.+|..++|+|||..+-+++..+ ..|++.+....+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 3467899999999999998888765 245666554443
No 135
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.70 E-value=0.85 Score=47.32 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHhcCC----CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 38 KPHQVEGLSWLIRRYLLG----VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~----~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+.++..+..+......+ .+.+|.-++|+|||..+-+++..+. ...|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 566677776666555443 3689999999999999999988773 2245555543
No 136
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.58 E-value=1.3 Score=45.90 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+++....+...+..-......++..+.|+|||..+-+++..+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5555555554444422222368999999999999988887764
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.48 E-value=2.1 Score=44.38 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHh---cCCC--CeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRY---LLGV--NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~---~~~~--~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
++.+.+.+.-.+... ..+. ..+|..+.|+|||..+-+++..+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 666666654444432 1223 588999999999999988887764
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.82 E-value=0.94 Score=47.05 Aligned_cols=44 Identities=25% Similarity=0.160 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHHh---cCCCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 38 KPHQVEGLSWLIRRY---LLGVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~---~~~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
++.+.+.+...+... ..+.+.+|..+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556666554433332 33457899999999999999888877643
No 139
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.50 E-value=2 Score=49.48 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHH----HHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQ----DFL 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~----~~L 365 (673)
++++.|.+.+..++.... .....+.......+|||..+....+......|.+++|.+.....+..+. +++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~------~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMI------SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp CCCHHHHHHHHHHHHHHH------SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcc------ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 456778877776654311 0111111222345899988766655555567889999998876554444 444
Q ss_pred HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEeeCCC
Q 005858 366 ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFYEQD 437 (673)
Q Consensus 366 ~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~D~~ 437 (673)
...|+++..++|+++..+|...++... .+...+++.+.......+++...+.||+=+.+
T Consensus 442 ~~~gi~v~~l~G~~~~~~r~~~~~~l~-------------~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPSEKEKIKSGLR-------------NGQIDVVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp TCSSCCEEECCSSSCHHHHHHHHHHHH-------------SSCCCEEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred hhcCceEEEEeCCCCHHHHHHHHHHHh-------------cCCCCEEEECHHHHhhhhhccCCceEEecccc
Confidence 445899999999999999988888886 35566777777666667788888777765554
No 140
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.34 E-value=0.42 Score=51.47 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..+.+|..++|+|||..+-+++..+ ...+++.|....++..|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 3578899999999999999888765 23456666555555444
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.27 E-value=1.2 Score=43.99 Aligned_cols=38 Identities=34% Similarity=0.354 Sum_probs=26.7
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
...+.+.+|.-++|+|||..+-++...+. ....|++.|
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v 63 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISL 63 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEE
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEE
Confidence 34567899999999999998877765442 223565555
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.08 E-value=0.62 Score=47.05 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
.+.+|..++|+|||..+-+++..+ ..+++.|....+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~ 73 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELE 73 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhh
Confidence 356788999999999999988877 3456666544443
No 143
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.97 E-value=0.82 Score=46.33 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
++.....+..++..- ...+.++..+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 455555554444431 122589999999999999988887763
No 144
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.01 E-value=0.79 Score=49.92 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
...+.+|..++|+|||..+-++...+ ..|++.|-
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEE
Confidence 44678999999999999998886654 35666554
No 145
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.98 E-value=0.75 Score=52.32 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECcc-cHHHHHHHHHHHC
Q 005858 36 ELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLS-VTDGWVSEMAKFT 109 (673)
Q Consensus 36 ~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~s-ll~~W~~E~~k~~ 109 (673)
.|-|.|+++|.. .++..++....|+|||.+.+.-+.++... +..+..+|+|+.+. ......+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999863 24567778889999999999888777655 44556789998764 4455666666654
No 146
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.42 E-value=2.9 Score=45.31 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=44.4
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc-ccHHHHHHHHHHHCCCCeEEEEe
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL-SVTDGWVSEMAKFTPKLEVLRYV 118 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~k~~p~~~v~~~~ 118 (673)
....|..-+|+|||+++..++... .+|+|||||. ....+|.+++..|.|.. |..|.
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~------~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHS------SSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred CeEEEeCCCchHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 345788889999999988877543 4789999997 45699999999998765 65554
No 147
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.26 E-value=0.84 Score=47.48 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
..+.+|.-++|+|||..+-+++..+ ..+++.|....+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLT 154 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhh
Confidence 4578899999999999998887665 3456666554443
No 148
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.91 E-value=4.3 Score=44.78 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=49.0
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCC-cCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEe-ccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGS-IRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMIS-TRAGG 420 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~-~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~s-t~agg 420 (673)
..++.+|||......++.+.+ ..+.+ +.+.|. ++ +.+.++.|+.. ++ .|++.. .....
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~---~~~~~-v~~q~~~~~---~~~~~~~~~~~------------~~-~vl~~v~gg~~~ 450 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMS---RISLP-KYVESEDSS---VEDLYSAISAN------------NK-VLIGSVGKGKLA 450 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHT---TCCSS-EEECCSSCC---HHHHHHHTTSS------------SS-CEEEEESSCCSC
T ss_pred hCCCCEEEEecCHHHHHHHHH---hcCCc-EEEcCCCCC---HHHHHHHHHhc------------CC-eEEEEEecceec
Confidence 455678888777777776665 23443 334443 34 45577888622 22 344443 37899
Q ss_pred cccCCC---C--CCeeEeeCCCCC
Q 005858 421 VGLNLV---A--ADTVIFYEQDWN 439 (673)
Q Consensus 421 ~GiNL~---~--a~~VI~~D~~wn 439 (673)
+|||++ + +..||+...|+-
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCCC
T ss_pred ccccccccCCcceeEEEEEcCCCC
Confidence 999999 4 889999888773
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.87 E-value=1.4 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeEEECCCcchHHHHHHHHHHHhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+|..+.|+|||..+-.++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999988887763
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.30 E-value=1.6 Score=45.15 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHh---cCCCCeEEECCCcchHHHHHHHHHHHhhhc
Q 005858 38 KPHQVEGLSWLIRRY---LLGVNVLLGDEMGLGKTLQAISFLSYLKFS 82 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~---~~~~~~iLade~GlGKTl~ai~~i~~l~~~ 82 (673)
++.+.+.+...+... ..+...+|..+.|+|||..+-.++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 566666654433332 224568899999999999998888776543
No 151
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.12 E-value=2.3 Score=42.01 Aligned_cols=24 Identities=33% Similarity=0.210 Sum_probs=20.6
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+|.-++|+|||..+-+++..+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999998888764
No 152
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.84 E-value=5 Score=42.14 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh---
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL--- 367 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~--- 367 (673)
.++.|.+.+..++.. .+.......++||..+....+......+.++||.+.....+..+.+.+..
T Consensus 22 ~~~~Q~~~i~~i~~~------------~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 22 LTGYQRLWAKRIVQG------------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp CCHHHHHHHHHHTTT------------CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHhcC------------CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 457888877766532 11222244589998855444444456788999999998887777777766
Q ss_pred CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc---cCCCCCCeeEee
Q 005858 368 RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG---LNLVAADTVIFY 434 (673)
Q Consensus 368 ~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G---iNL~~a~~VI~~ 434 (673)
.|+.+..++|+.+..+|...++.+. .+...+++.++...-.- +++...+.||+=
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~-------------~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFE-------------EDDYHILVFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHH-------------HTCCSEEEEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred CCceEEEEECCCChhhHHHHHHHhh-------------cCCCCEEEECHHHHHHHHHHhccccccEEEEe
Confidence 6889999999999988877777775 23466888877655221 444556655543
No 153
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.65 E-value=4.1 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+|..+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999888766
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.60 E-value=0.91 Score=48.51 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=34.2
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSE 104 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E 104 (673)
.+|.+|..++|+|||+.+-+++..+. .|++.|.+..++..|..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 46889999999999999999998773 567777777766555433
No 155
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.55 E-value=2.1 Score=40.05 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.8
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.+.+|.-++|+|||..+.+++..+... ..+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE
Confidence 678899999999999998888777532 2455544
No 156
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.59 E-value=0.57 Score=50.06 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWV 102 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~ 102 (673)
.+|.+|..++|+|||+.|-+++..+ ..|++.|.+..++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhccc
Confidence 4688999999999999999999877 35788887777766553
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.76 E-value=2.4 Score=37.88 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566788999999999999988887775
No 158
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.52 E-value=2.5 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.4
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+|.-++|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999998877665
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.19 E-value=5.8 Score=42.21 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=24.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
.+++-..|+|||.++..++..+...+ +.+++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 46778899999999999998886533 3455554
No 160
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.12 E-value=2.7 Score=42.04 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+.+.+|..++|+|||..+-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999999999999998887765
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.63 E-value=1.9 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=25.1
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
.+++-..|+|||.++..++.++...+ +.+++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 46777899999999999998886432 3456665
No 162
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=80.29 E-value=2.5 Score=48.50 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEECcccH-HHHHHHHHHH
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLCPLSVT-DGWVSEMAKF 108 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~P~sll-~~W~~E~~k~ 108 (673)
..|-|.|+++|.. ..+..++....|+|||.+.+.-+.++... +..+..+|+|+.+... ....+.+.+.
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999853 24566777788999999999888888754 3345669999986433 3344444443
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.24 E-value=0.79 Score=48.69 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSE 104 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E 104 (673)
..|.+|.-++|+|||+.|-+++..+. .+++.|....++..|.-|
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCch
Confidence 46889999999999999999998873 578888777776655433
No 164
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.28 E-value=0.86 Score=48.59 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+|.+|..++|+|||+.+-+++..+ ..+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccc
Confidence 4678999999999999999999877 3567777766666544
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.24 E-value=9.7 Score=41.04 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
..+.+|.-++|+|||..+-+++..+ ..|++.+....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~ 84 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSD 84 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHH
Confidence 3568999999999999998887755 24666554433
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.96 E-value=7 Score=36.66 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHHHH-HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc--cHHHHHH
Q 005858 44 GLSWLIR-RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS--VTDGWVS 103 (673)
Q Consensus 44 gv~~l~~-~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s--ll~~W~~ 103 (673)
++..++. .+..|.-.+|.-+.|+|||..+..++. . ..++++++.-.. ....|.+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCCCCCHHHHHH
Confidence 3444443 334455578999999999999888876 1 235677776543 3344544
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.89 E-value=6.2 Score=40.35 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHh-cCC--CCeEEECCCcchHHHHHHHHHHHh
Q 005858 41 QVEGLSWLIRRY-LLG--VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 41 Q~~gv~~l~~~~-~~~--~~~iLade~GlGKTl~ai~~i~~l 79 (673)
|...+..+.... ..+ ...+|..+.|+|||..+-+++..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555544 322 247899999999999988888755
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=78.83 E-value=14 Score=38.47 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHH-HHhc-----CCCCeEE--ECCCcchHHHHHHHHHHHhh
Q 005858 38 KPHQVEGLSWLI-RRYL-----LGVNVLL--GDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 38 ~~~Q~~gv~~l~-~~~~-----~~~~~iL--ade~GlGKTl~ai~~i~~l~ 80 (673)
++.+.+.+..++ .... .+...+| ..+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 667777765555 4332 2234667 78999999999988887664
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.42 E-value=6.2 Score=45.35 Aligned_cols=26 Identities=35% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.+.+|.-++|+|||..+-+++..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988887764
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.07 E-value=3 Score=36.71 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=30.8
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHC
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFT 109 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~ 109 (673)
..+.+.+|.-++|+|||..+-++.... . |++.|-...+...|...+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~~~~~~~~~~a 74 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLIDMPMELLQKA 74 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHHHCHHHHHHHT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCChHhhhhHHHhC
Confidence 346689999999999998776554322 1 6555544444455544443333
No 171
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.01 E-value=0.89 Score=48.76 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHHH------------hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHH
Q 005858 37 LKPHQVEGLSWLIRR------------YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVS 103 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~------------~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~ 103 (673)
-.+.|++.+..++.. ....+|.+|..++|+|||+.|-+++..+. .+++.|....++..|..
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYVG 285 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSSS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccCC
Confidence 356677666543221 12356889999999999999999998773 56777777777665533
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=76.74 E-value=14 Score=44.49 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH----
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE---- 366 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~---- 366 (673)
.++.|.+....++.... .....+.......++||..+....+-.....|.+++|.+..+..+....+.+.
T Consensus 604 ~t~~Q~~ai~~il~~~~------~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMC------QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CCHHHHHHHHHHHHHHH------SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHh------cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 36677776666554211 01111222234568999977655554555678899999998876655555554
Q ss_pred hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccccCCCCCCeeEee
Q 005858 367 LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGLNLVAADTVIFY 434 (673)
Q Consensus 367 ~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~GiNL~~a~~VI~~ 434 (673)
..++.+..++|..+..++...++... .+...+++.+.......+++...+.||+=
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~-------------~g~~dIvV~T~~ll~~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVA-------------EGKIDILIGTHKLLQSDVKFKDLGLLIVD 732 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHH-------------TTCCSEEEECTHHHHSCCCCSSEEEEEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHh-------------cCCCCEEEECHHHHhCCccccccceEEEe
Confidence 33678999999999988888888876 35567877777777666777666555543
No 173
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.48 E-value=4.2 Score=35.84 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.1
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..+.+.+|..++|+|||..+-++..... ....|++|-|.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~v~~~~ 60 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR---NAQGEFVYREL 60 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST---TTTSCCEEEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC---ccCCCEEEECC
Confidence 4566899999999999998877665432 22456664444
No 174
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.86 E-value=12 Score=39.46 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=74.6
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHH-hCCCeEEEEecCchHHHHHHHHHHh
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLY-NSGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~-~~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
..+.+.|.+.+..++.. +-......++||.......+.... ..+.++||.+.....+....+.+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-------------~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~ 74 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-------------NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRR 74 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-------------CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhhC-------------CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34667788777655432 112224458999887766655443 4788999999987777666665554
Q ss_pred C-CC---cEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc-----ccCCCCCCeeEeeCC
Q 005858 368 R-KY---SYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV-----GLNLVAADTVIFYEQ 436 (673)
Q Consensus 368 ~-g~---~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~-----GiNL~~a~~VI~~D~ 436 (673)
. +. .+..++|+.+..++....... .|++++...... .+++...+.||+=+.
T Consensus 75 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~------------------~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 134 (494)
T 1wp9_A 75 LFNLPPEKIVALTGEKSPEERSKAWARA------------------KVIVATPQTIENDLLAGRISLEDVSLIVFDEA 134 (494)
T ss_dssp HBCSCGGGEEEECSCSCHHHHHHHHHHC------------------SEEEECHHHHHHHHHTTSCCTTSCSEEEEETG
T ss_pred HhCcchhheEEeeCCcchhhhhhhccCC------------------CEEEecHHHHHHHHhcCCcchhhceEEEEECC
Confidence 3 55 899999999987765554333 277777654432 344555666665333
No 175
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=74.48 E-value=8.3 Score=43.28 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 35 AELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 35 ~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
..+.+.|.+++..+.... .+ ..+|-.+-|-|||..+..++..+. ...+|.+|.
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~-~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~ 226 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PG-VAAVTAARGRGKSALAGQLISRIA------GRAIVTAPA 226 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SE-EEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhh-hC-eEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCC
Confidence 467889999997776642 22 346666689999976666666552 235888886
No 176
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.27 E-value=8.2 Score=42.49 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCC-CCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMS-PGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~-~~~~LIV~P~s 96 (673)
....+++-.+|+|||...-+++..+...... .-.+++|=|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4678999999999999988888877644322 22356666775
No 177
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=72.66 E-value=11 Score=45.17 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=84.7
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh--
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL-- 367 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~-- 367 (673)
++++.|...+..++.. .+.......+|||..+....+......+.++||.+.....+..+.+.+..
T Consensus 78 ~pt~iQ~~ai~~il~g------------~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQG------------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp CCCHHHHHHHHHHTTT------------CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHcC------------CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 3678888877766542 11222344589999876666555667888999999999888888887776
Q ss_pred -CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc---cCCCCCCeeEeeC
Q 005858 368 -RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG---LNLVAADTVIFYE 435 (673)
Q Consensus 368 -~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G---iNL~~a~~VI~~D 435 (673)
.++.+..++|+.+..+|...+..+. .+...++++++...-.- +++...+.||+=+
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~-------------~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFE-------------EDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHH-------------TSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHh-------------CCCCCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 5788999999999878877777776 34466888776554211 4455666665533
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.48 E-value=5.6 Score=40.22 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh-hcCCCCCCEEEE
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK-FSQMSPGPFLVL 92 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~-~~~~~~~~~LIV 92 (673)
+.+.+|..++|+|||..+.+++..+. ..+ .+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 46789999999999999999988775 432 345544
No 179
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=71.36 E-value=6.1 Score=39.67 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDG 100 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~ 100 (673)
.+.+.+|..++|+|||..+-+++..+ ..+++.|....+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTM 88 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhh
Confidence 45678999999999999998888765 245555544444433
No 180
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=71.24 E-value=7.6 Score=40.33 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=38.9
Q ss_pred HHHHHHH--HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 44 GLSWLIR--RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 44 gv~~l~~--~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
++..++. -+..+.-.+|+-+.|+|||..++.++...... .+++++|.......+|
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH
Confidence 4555554 33445567899999999999999988776433 3578888776655555
No 181
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=70.71 E-value=7.8 Score=39.95 Aligned_cols=56 Identities=14% Similarity=-0.007 Sum_probs=37.9
Q ss_pred HHHHHHHH--HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 43 EGLSWLIR--RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 43 ~gv~~l~~--~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.++..++. -+..+.-.+|+-+.|+|||..++.++...... .++++++.......++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 34555554 33345557899999999999999988776533 3567888765544443
No 182
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=70.63 E-value=5.4 Score=48.64 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCcCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC---CCCCEEEEECccc
Q 005858 32 GVTAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM---SPGPFLVLCPLSV 97 (673)
Q Consensus 32 ~~~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~---~~~~~LIV~P~sl 97 (673)
.+...|.|-|..+|.. .+.+.++....|+|||.+.+.-+.++...+. ....+|+|+++..
T Consensus 6 ~~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~ 68 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNA 68 (1232)
T ss_dssp ----CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHH
T ss_pred CCCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHH
Confidence 4567799999999852 2567888889999999999887777655543 4456899999743
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.59 E-value=15 Score=36.93 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=23.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+.-..|+|||.++..++..+... .+.++++.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 3466789999999999888877643 24455554
No 184
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=70.52 E-value=6 Score=47.93 Aligned_cols=51 Identities=25% Similarity=0.113 Sum_probs=40.0
Q ss_pred EECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHHHCC
Q 005858 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAKFTP 110 (673)
Q Consensus 60 Lade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k~~p 110 (673)
+-...|+|||.+++.-+.++...+..+.++|++||.....+-...+.+..+
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 344579999999999888887776666789999999888776666665544
No 185
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.36 E-value=3.8 Score=44.02 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHHHhcC----CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 37 LKPHQVEGLSWLIRRYLL----GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~----~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
-.+..++.+..++..+.. +.+.+|..++|+|||..+-+++..+. ...+++.+....+..
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~----~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG----SKVPFCPMVGSEVYS 103 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC----TTSCEEEEEGGGGCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC----CCceEEEEeHHHHHH
Confidence 345566555444444433 35789999999999999999988763 124666666555543
No 186
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.05 E-value=11 Score=43.99 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
..+.+|.-++|+|||..+-+++..+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999988888764
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.21 E-value=5.1 Score=46.20 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+|.+|.-++|+|||+.+=+++..+ ..+++.|-...++..|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKL 278 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhccc
Confidence 3578999999999999998877654 2455555444544433
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=67.61 E-value=44 Score=36.10 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHhcC-----------CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 38 KPHQVEGLSWLIRRYLL-----------GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~-----------~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.+.++..+.-+...+.. ..|.+|.-++|+|||..+-+++..+. .|++.|...
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g~ 98 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGS 98 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEGG
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEehh
Confidence 45666655555443321 34689999999999999888776552 456655443
No 189
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.61 E-value=34 Score=34.30 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 38 KPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
|+.+.+.+. . +.. ...+|.-+.|+|||..+-.++..+
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 566666543 3 333 577889999999999988887665
No 190
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=65.47 E-value=4.4 Score=41.16 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+.+|..++|+|||..+-++...+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 36789999999999999988887655
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=65.26 E-value=11 Score=38.17 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 44 GLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 44 gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
++..+..-+..|.-.+|+..+|+|||..++.++......+ .+++++....-..+....+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHH
Confidence 4444444455555689999999999999988887664322 67888877655555544443
No 192
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.68 E-value=6.5 Score=37.27 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.5
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
+.++..++|+|||..+.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998876
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=64.11 E-value=28 Score=35.20 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=30.6
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhc---CCCCCCEEEEECccc
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFS---QMSPGPFLVLCPLSV 97 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~---~~~~~~~LIV~P~sl 97 (673)
.+.-.+|+-+.|+|||..++.++...... ++..+++++|.-...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34457899999999999999888764321 122456788876543
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.76 E-value=76 Score=29.31 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh---CCCeEEEEecCchHHHHHHHHHHh
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN---SGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~---~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
..+.|.+.+..++.. .+.......++||.......+..... .+.++||.+........+.+.+..
T Consensus 37 ~~~~Q~~~i~~~~~~------------~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 37 PSEVQHECIPQAILG------------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp CCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC------------CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 567888887766542 11122234579998654443333322 234899999988777666665544
Q ss_pred C-----CCcEEEEeCCcCHHHHHHHH
Q 005858 368 R-----KYSYERLDGSIRAEERFAAI 388 (673)
Q Consensus 368 ~-----g~~~~~i~G~~~~~~R~~~i 388 (673)
. ++.+..+.|+.+...+...+
T Consensus 105 ~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 105 FSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp HTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred HHhhCCCceEEEEeCCCChHHHHHHH
Confidence 3 78899999998876654444
No 195
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.23 E-value=19 Score=35.61 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+.+.+|..++|+|||..+-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998888766
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.87 E-value=23 Score=36.48 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=30.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
+.-.+|.-+.|+|||..++.++..+... .+++++|.+.....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccc
Confidence 3346788899999999999988776542 35678887765443
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=61.73 E-value=13 Score=35.98 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
..+.+|..++|+|||..+-+++..+ ..|++.|-...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~ 80 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSD 80 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHH
Confidence 4568899999999999988887665 24555554333
No 198
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=61.72 E-value=8.2 Score=34.80 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=22.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
+.+.+|..+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356899999999999999888877643
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=59.31 E-value=86 Score=31.28 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHh----cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 38 KPHQVEGLSWLIRRY----LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~----~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.....+..++... ....+.+|.-+.|+|||..+-++...+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 455555554444433 223578999999999999998886654
No 200
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=58.92 E-value=18 Score=30.98 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred EEEEecCchH-H------HHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 348 VLLFAQMTQT-L------DILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 348 vlIFsq~~~~-l------d~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
|.||+..... . ..+..+|..+|++|..++=+...+.|..++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 5677765433 2 6888999999999999999999999999998884
No 201
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=58.87 E-value=16 Score=34.85 Aligned_cols=51 Identities=27% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMAK 107 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~k 107 (673)
|.-.+++.++|+|||..++.++......+ .++++++.......+..+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHH
Confidence 44579999999999999988776532222 3567888776555555555543
No 202
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=58.86 E-value=16 Score=37.43 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 44 GLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 44 gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
.+..+..-+..|.-.+|+..+|.|||..++.++..... ...+++++....-..+....+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHH
Confidence 44455544555556899999999999999988877654 346788888765554444443
No 203
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.79 E-value=12 Score=38.42 Aligned_cols=36 Identities=33% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.+.+.+|.-++|+|||..+-+++..+ ..|++.+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 34578999999999999998888766 3566655433
No 204
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.73 E-value=39 Score=33.62 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=24.0
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+....|.|||..+..++..+... .+.++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 455789999999999888877543 345666653
No 205
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=57.96 E-value=95 Score=29.60 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHhC--CCeEEEEecCchHHHHHHHHH-
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYNS--GHRVLLFAQMTQTLDILQDFL- 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~~--g~kvlIFsq~~~~ld~l~~~L- 365 (673)
..++.|.+.+..++.. .+.......++||... +.-++..+... +.++||.+........+.+.+
T Consensus 65 ~~~~~Q~~~i~~i~~~------------~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~ 132 (249)
T 3ber_A 65 KPTKIQIEAIPLALQG------------RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFE 132 (249)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHH
Confidence 3567888877766532 1112223458999875 33444444443 457999998877665555444
Q ss_pred ---HhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc------ccccCCCCCCeeEe
Q 005858 366 ---ELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG------GVGLNLVAADTVIF 433 (673)
Q Consensus 366 ---~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag------g~GiNL~~a~~VI~ 433 (673)
...++.+..+.|+.+.......+ . .+..+++.+.... ..++++...+.||+
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~--------------~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 133 ALGSSIGVQSAVIVGGIDSMSQSLAL---A--------------KKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHHGGGTCCEEEECTTSCHHHHHHHH---H--------------TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred HHhccCCeeEEEEECCCChHHHHHHh---c--------------CCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 34488999999998765443322 1 3344666665432 13456666666655
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=57.87 E-value=16 Score=34.76 Aligned_cols=50 Identities=24% Similarity=0.064 Sum_probs=34.7
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEMA 106 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 106 (673)
.|.-.+|+-+.|+|||..++.++...... .++++++.......+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 34557889999999999998887766432 356788876655555544443
No 207
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=56.70 E-value=46 Score=27.46 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEEEecC------chHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHH
Q 005858 334 LDLLLKKLYNSGHRVLLFAQM------TQTLDILQDFLELRKYSYERLDGSIRAEERFAAIR 389 (673)
Q Consensus 334 l~~ll~~~~~~g~kvlIFsq~------~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~ 389 (673)
+.+.+..+.. .++|+||+.. =.......++|...|++|..++=....+.+..+.+
T Consensus 7 ~~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 7 LKDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 3445555544 4589999984 56789999999999999988876655555544443
No 208
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=56.61 E-value=16 Score=46.40 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=32.7
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
..+.+.+|.-++|+|||..+++++...... ...++++.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEccccc
Confidence 346678999999999999999998776432 3457777776544
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=56.33 E-value=18 Score=36.67 Aligned_cols=42 Identities=10% Similarity=-0.102 Sum_probs=30.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTD 99 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~ 99 (673)
-.+++-+.|+|||..++.++......+ ..+.++.|.....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhh
Confidence 367899999999999999887775432 235678887765443
No 210
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=55.74 E-value=93 Score=29.11 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=49.3
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHH-HHHHHHH------hCCCeEEEEecCchHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLD-LLLKKLY------NSGHRVLLFAQMTQTLDILQ 362 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~-~ll~~~~------~~g~kvlIFsq~~~~ld~l~ 362 (673)
..++.|.+.+..++.. .+.......++||..... -++..+. ..+.++||.+........+.
T Consensus 47 ~~~~~Q~~~i~~~~~~------------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~ 114 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQG------------KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTF 114 (236)
T ss_dssp BCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHH
Confidence 3567787777665432 111222345899987533 3333332 35678999999877766665
Q ss_pred HHHHh----CCCcEEEEeCCcCHHHH
Q 005858 363 DFLEL----RKYSYERLDGSIRAEER 384 (673)
Q Consensus 363 ~~L~~----~g~~~~~i~G~~~~~~R 384 (673)
+.+.. .++.+..+.|+.+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 140 (236)
T 2pl3_A 115 EVLRKVGKNHDFSAGLIIGGKDLKHE 140 (236)
T ss_dssp HHHHHHTTTSSCCEEEECCC--CHHH
T ss_pred HHHHHHhCCCCeeEEEEECCCCHHHH
Confidence 55543 35788888888765443
No 211
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=55.61 E-value=13 Score=39.74 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 44 GLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 44 gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
++..++.-+..|.-.+|+..+|.|||..++.++...... ..+++++..-.-..++...+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHH
Confidence 344444444455568999999999999999988777543 35788887654444444433
No 212
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=55.42 E-value=49 Score=27.44 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHH
Q 005858 335 DLLLKKLYNSGHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAI 388 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i 388 (673)
...+..+.+ .++|+||+. +=.......++|...|++|..++=....+.|..+.
T Consensus 6 ~~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~ 64 (111)
T 3zyw_A 6 NLRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 64 (111)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHH
T ss_pred HHHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHH
Confidence 344555444 469999996 33567889999999999999888766655554443
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=55.23 E-value=19 Score=38.23 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 44 GLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 44 gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
++..++.-+..|.-.+|+..+|+|||..++.++....... ..|++++....-..++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHH
Confidence 3444443344455579999999999999998887765322 35788887765555555443
No 214
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=54.41 E-value=52 Score=33.21 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=24.1
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+....|.|||.++..++..+... .+.++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 3455679999999999888877643 35566664
No 215
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=52.98 E-value=12 Score=36.01 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=29.7
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEE-E-ECcccHHHHH
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLV-L-CPLSVTDGWV 102 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LI-V-~P~sll~~W~ 102 (673)
+.++....|.|||..++.++..+...+ ..+++ . -|-.-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G---~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG---VRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC---CCEEEEEeCCCCChhHHH
Confidence 578889999999999999999887544 23333 2 3434445554
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.85 E-value=16 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=27.2
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
..+.+.+|.-++|+|||..+-++..... ....|++.|-
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v~ 60 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTLN 60 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEEe
Confidence 3466899999999999998877765442 2345666663
No 217
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=52.32 E-value=59 Score=38.73 Aligned_cols=88 Identities=18% Similarity=0.114 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHH----HhC
Q 005858 293 VLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFL----ELR 368 (673)
Q Consensus 293 ~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L----~~~ 368 (673)
+.|...+..++.. .+.......+|||..+..-++..+...+.++||.+.....+..+.+.+ ...
T Consensus 59 ~iQ~~ai~~il~g------------~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 59 AIQKMWAKRILRK------------ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp HHHHHHHHHHHTT------------CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC------------CCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 6788777766542 112223446899997666677777778889999999887665555444 444
Q ss_pred CC----cEEEEeCCcCHHHHHHHHHhhc
Q 005858 369 KY----SYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 369 g~----~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
++ .+..++|+++..++....+.+.
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~ 154 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLR 154 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGG
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhcc
Confidence 67 8899999999888777777665
No 218
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=51.86 E-value=1.4e+02 Score=27.01 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=26.5
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE--CcccHHHHH
Q 005858 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC--PLSVTDGWV 102 (673)
Q Consensus 62 de~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~--P~sll~~W~ 102 (673)
-.-|.|||..++.++..+...+ .++|+|= |...+..|.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHH
Confidence 4569999999999999887533 4577774 344455553
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.01 E-value=22 Score=33.21 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=29.2
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
+..|.-.+|..+.|+|||..+..++..+... .++++++....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 3345557889999999999988888666433 24567765443
No 220
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=50.56 E-value=25 Score=29.83 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCC-CeEEEEec-CchHHHHHHHHHHhCCCcEEEEeCCcCH
Q 005858 333 VLDLLLKKLYNSG-HRVLLFAQ-MTQTLDILQDFLELRKYSYERLDGSIRA 381 (673)
Q Consensus 333 ~l~~ll~~~~~~g-~kvlIFsq-~~~~ld~l~~~L~~~g~~~~~i~G~~~~ 381 (673)
.+...+..+ ..+ .++||||. ...........|...|+++..++|++..
T Consensus 77 ~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444444 345 89999995 6666778888899999998999998763
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.47 E-value=17 Score=36.13 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=24.9
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..+|.-++|+|||..+-+++..+.. ..+|++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~ 81 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRI 81 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEe
Confidence 5789999999999999888877642 23455555
No 222
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=50.15 E-value=28 Score=37.04 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHH
Q 005858 45 LSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSE 104 (673)
Q Consensus 45 v~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E 104 (673)
+..+...+..|.-.+|+..+|+|||..++.++..+.... ..+++++....-..++...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 444443344455679999999999999999888775432 3478888765444444443
No 223
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=49.99 E-value=71 Score=26.96 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCeEEEEecC------chHHHHHHHHHHhCCCc---EEEEeCCcCHHHHHHHHH
Q 005858 336 LLLKKLYNSGHRVLLFAQM------TQTLDILQDFLELRKYS---YERLDGSIRAEERFAAIR 389 (673)
Q Consensus 336 ~ll~~~~~~g~kvlIFsq~------~~~ld~l~~~L~~~g~~---~~~i~G~~~~~~R~~~i~ 389 (673)
..+..+.+ .++|+||+.. =.......++|...|++ |..++=....+.|..+.+
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 34444444 4589999984 45788899999999998 888876656555554433
No 224
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.54 E-value=46 Score=33.34 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=24.7
Q ss_pred HHHHHHH-HhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 44 GLSWLIR-RYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 44 gv~~l~~-~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
++..++. -+..+.-.+|+-+.|+|||..++.++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444442 22333447899999999999999888753
No 225
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.39 E-value=15 Score=37.27 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCC--CeEEECCCcchHHHHHHHHHHHhh
Q 005858 41 QVEGLSWLIRRYLLGV--NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 41 Q~~gv~~l~~~~~~~~--~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
|...+..+......+. ..++..+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444444444333343 378999999999999999988774
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.19 E-value=5.7 Score=45.74 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
..|.+|..++|+|||+.+-+++..+ ..|++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 3578999999999999998888765 3566666555666555
No 227
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=47.60 E-value=18 Score=33.89 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=25.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
+|..-..|.|||.+++.++..+...+ .+++++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 35556789999999999999887543 45777755
No 228
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=47.46 E-value=64 Score=29.92 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
.+.+.|.+.+..++.. .+.......++||... +..++..+. ..+.++||.+........+.+.+.
T Consensus 36 ~~~~~Q~~~i~~~~~~------------~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG------------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVM 103 (224)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcC------------CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHH
Confidence 3567888777765532 1112223458999876 445555443 235689999998777665555554
Q ss_pred ----hCCCcEEEEeCCcCHHHH
Q 005858 367 ----LRKYSYERLDGSIRAEER 384 (673)
Q Consensus 367 ----~~g~~~~~i~G~~~~~~R 384 (673)
..++.+..+.|+.+..+.
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 104 ALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp HHTTTSCCCEEEECC-------
T ss_pred HHhcccCceEEEEeCCcchHHH
Confidence 347888888888765443
No 229
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=46.63 E-value=7.5 Score=42.24 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=22.3
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+.+|..++|+|||..+-++...+
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 346789999999999999888777544
No 230
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=46.51 E-value=10 Score=37.49 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.1
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
+.+|..++|+|||+.+.+++..+
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 47888899999999999988764
No 231
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=46.30 E-value=1.1e+02 Score=28.48 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHH--------hCCCeEEEEecCchHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLY--------NSGHRVLLFAQMTQTLDI 360 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~--------~~g~kvlIFsq~~~~ld~ 360 (673)
..++.|.+.+..++... +.......++||..+ +.-++..+. ..+.++||.+........
T Consensus 42 ~~~~~Q~~~i~~~~~~~------------~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q 109 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGI------------DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALH 109 (228)
T ss_dssp SCCHHHHHHHHHHHTTC------------CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC------------CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHH
Confidence 35678888776655321 112223458999764 333343332 267789999998888777
Q ss_pred HHHHHHh---CCCcEEEEeCCcCHHHH
Q 005858 361 LQDFLEL---RKYSYERLDGSIRAEER 384 (673)
Q Consensus 361 l~~~L~~---~g~~~~~i~G~~~~~~R 384 (673)
+.+.+.. .++....+.|+.+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (228)
T 3iuy_A 110 VEAECSKYSYKGLKSICIYGGRNRNGQ 136 (228)
T ss_dssp HHHHHHHHCCTTCCEEEECC------C
T ss_pred HHHHHHHhcccCceEEEEECCCChHHH
Confidence 7777765 47788888888765443
No 232
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=46.15 E-value=12 Score=35.83 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQM 84 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~ 84 (673)
.|-+-++|.|||..+++++..+...+.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 456678999999999999999976653
No 233
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=45.82 E-value=12 Score=36.22 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQ 83 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~ 83 (673)
.|.+-++|.|||..+++++..+...+
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 46777999999999999999997665
No 234
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=45.73 E-value=88 Score=31.69 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=29.2
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhhhc---CCCCCCEEEEECccc
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLKFS---QMSPGPFLVLCPLSV 97 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~~~---~~~~~~~LIV~P~sl 97 (673)
.-.+|+-+.|+|||..++.++...... ++..+++++|.....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 346899999999999999888764221 113456788876543
No 235
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=45.32 E-value=1.6e+02 Score=28.12 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh------CCCeEEEEecCchHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN------SGHRVLLFAQMTQTLDILQ 362 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~------~g~kvlIFsq~~~~ld~l~ 362 (673)
.+++.|.+.+..++.. .+.......+|||..+ +.-++..+.. .+.++||.+.....+..+.
T Consensus 76 ~~~~~Q~~~i~~~~~~------------~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~ 143 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG------------RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTF 143 (262)
T ss_dssp BCCHHHHHHHHHHHHT------------CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHH
Confidence 3577888877766542 1112223458999865 4444544443 5778999999887665555
Q ss_pred HHHH----hCCCcEEEEeCCcCHHHHH
Q 005858 363 DFLE----LRKYSYERLDGSIRAEERF 385 (673)
Q Consensus 363 ~~L~----~~g~~~~~i~G~~~~~~R~ 385 (673)
+.+. ..+..+..+.|+.......
T Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 170 (262)
T 3ly5_A 144 GVLKELMTHHVHTYGLIMGGSNRSAEA 170 (262)
T ss_dssp HHHHHHTTTCCSCEEEECSSSCHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCHHHHH
Confidence 5554 4577888899988765443
No 236
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.26 E-value=21 Score=34.61 Aligned_cols=25 Identities=36% Similarity=0.258 Sum_probs=21.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+|..++|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568899999999999998888765
No 237
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=45.14 E-value=50 Score=31.05 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHH--hCCCeEEEEecCchHHHHHHHHHHh
Q 005858 291 ITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLY--NSGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 291 ~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
.++.|.+.+..++.. .+.......++||... +..++..+. ..+.++||.+........+.+.+..
T Consensus 47 ~~~~Q~~~i~~~~~~------------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCG------------LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp CCHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC------------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 567888777655431 1112223458999876 444555443 2457899999988777666666654
Q ss_pred C-----CCcEEEEeCCcCHHHHHH
Q 005858 368 R-----KYSYERLDGSIRAEERFA 386 (673)
Q Consensus 368 ~-----g~~~~~i~G~~~~~~R~~ 386 (673)
. ++.+..+.|+.+..++..
T Consensus 115 ~~~~~~~~~~~~~~g~~~~~~~~~ 138 (230)
T 2oxc_A 115 IGIKMEGLECHVFIGGTPLSQDKT 138 (230)
T ss_dssp HTTTSTTCCEEEECTTSCHHHHHH
T ss_pred HhcccCCceEEEEeCCCCHHHHHH
Confidence 2 678899999988765543
No 238
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=45.06 E-value=60 Score=29.02 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CCCeEEEEe----cCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccc
Q 005858 344 SGHRVLLFA----QMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQ 394 (673)
Q Consensus 344 ~g~kvlIFs----q~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~ 394 (673)
...|+|++| .+..-+.++..+|+..||.+..+...++.++-.+.+.+++.+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~d 71 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVD 71 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC
Confidence 456889987 345567899999999999999998889988877777776633
No 239
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=44.76 E-value=91 Score=25.13 Aligned_cols=57 Identities=23% Similarity=0.164 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 335 DLLLKKLYNSGHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 335 ~~ll~~~~~~g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
.+.+..+... ++|+||+. +=.....+..+|...+++|..++=......+..+...+.
T Consensus 7 ~~~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 7 EERLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp HHHHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 3444455444 47999985 335688899999999999999987777665655555443
No 240
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=44.20 E-value=88 Score=33.53 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=48.9
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC-----CCeEEEEecCchHHHHHHH
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS-----GHRVLLFAQMTQTLDILQD 363 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~-----g~kvlIFsq~~~~ld~l~~ 363 (673)
..+++.|.+.+..++.. .+.......++||.......+...... +.++||.+.....+..+.+
T Consensus 6 ~~~~~~Q~~~i~~~~~~------------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 73 (556)
T 4a2p_A 6 KKARSYQIELAQPAING------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN 73 (556)
T ss_dssp --CCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC------------CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHH
Confidence 34677888877766532 111222345899987654444333332 7789999998766554444
Q ss_pred HH----HhCCCcEEEEeCCcCHHHH
Q 005858 364 FL----ELRKYSYERLDGSIRAEER 384 (673)
Q Consensus 364 ~L----~~~g~~~~~i~G~~~~~~R 384 (673)
.+ ...++.+..++|+.+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 74 VFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp HHHHHHGGGTCCEEECCCC-----C
T ss_pred HHHHHhcccCceEEEEeCCCCcchh
Confidence 44 4448999999999865543
No 241
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=42.83 E-value=15 Score=35.95 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.8
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQM 84 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~ 84 (673)
.|-+-++|.|||..+++++..+...+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 466779999999999999999976653
No 242
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=42.58 E-value=29 Score=21.48 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHhcCcceeee
Q 005858 631 RRKAEEKKLAKWEANGYQSLSV 652 (673)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~ 652 (673)
|++....|-|+|++.+.-++-|
T Consensus 6 rrerra~kqa~wkaanpl~vgv 27 (35)
T 1qfq_B 6 RRERRAEKQAQWKAANPLLVGV 27 (35)
T ss_dssp HHHHTHHHHHHHHHTCGGGSSS
T ss_pred HHHHHHHHHhhhhccCceeeee
Confidence 4444456789999998755544
No 243
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.55 E-value=40 Score=37.38 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 43 EGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 43 ~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.++..+......+...+|.-+.|+|||..+-+++..+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3444444444457889999999999999998887755
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=42.34 E-value=24 Score=36.41 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=35.1
Q ss_pred HHHHHHH--HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 44 GLSWLIR--RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 44 gv~~l~~--~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
++..++. -+..+.-.+|+-+.|+|||..++.++...... .+++++|....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~ 101 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEH 101 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 4555543 23445567899999999999999988776543 24678887643
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.32 E-value=24 Score=36.37 Aligned_cols=25 Identities=40% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+|..++|+|||..+-+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998888765
No 246
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=41.46 E-value=84 Score=34.65 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCC
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRK 369 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g 369 (673)
.+.+.|.+.+..++.. .+.......++||-... ++..+. .+.++||.+.....+....+.|...|
T Consensus 44 ~~rp~Q~~~i~~il~g------------~d~lv~~pTGsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~g 108 (591)
T 2v1x_A 44 KFRPLQLETINVTMAG------------KEVFLVMPTGGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLG 108 (591)
T ss_dssp SCCTTHHHHHHHHHTT------------CCEEEECCTTSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC------------CCEEEEECCCChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcC
Confidence 3556788777766541 11222344578887532 222232 35689999999888877777788889
Q ss_pred CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 370 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
+++..++|+.+..++..+...+... .+...++++++...
T Consensus 109 i~~~~l~~~~~~~~~~~~~~~l~~~-----------~~~~~Ilv~Tpe~L 147 (591)
T 2v1x_A 109 ISATMLNASSSKEHVKWVHAEMVNK-----------NSELKLIYVTPEKI 147 (591)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHCT-----------TCCCCEEEECHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHhhcc-----------cCCCCEEEEChhHh
Confidence 9999999999998888887777422 35667777777543
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=41.21 E-value=20 Score=38.92 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 40 HQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 40 ~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+...+.+.+ ..+.+.++.-++|+|||.+.-+++..+
T Consensus 248 ~~l~~l~~~v---~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 248 GVLAYLWLAI---EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHH---HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344444333 447789999999999998877666544
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.98 E-value=31 Score=37.21 Aligned_cols=52 Identities=4% Similarity=-0.142 Sum_probs=36.1
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHHHHH
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWVSEM 105 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 105 (673)
+..|.-.+|+..+|+|||..++.++...... ...+++++.-.....+....+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHHH
Confidence 3345557999999999999999988776432 135788887765444444433
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=40.80 E-value=47 Score=35.05 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=25.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..++...|.|||.++..++..+... .+.++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 3456789999999999998887643 345666653
No 250
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.52 E-value=1.1e+02 Score=30.85 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHH-HHHh--CCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLK-KLYN--SGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~-~~~~--~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
.+.+.|.+.+..++.. .+-......++||.......+. .+.. .+.++||.+........+.+.+.
T Consensus 30 ~~~~~Q~~~i~~~~~~------------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~ 97 (391)
T 1xti_A 30 HPSEVQHECIPQAILG------------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 97 (391)
T ss_dssp SCCHHHHHHHHHHTTT------------CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC------------CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHH
Confidence 3567888777665532 1111223458999865433333 3221 35589999998877776666554
Q ss_pred hC-----CCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc-----cccCCCCCCeeEeeC
Q 005858 367 LR-----KYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG-----VGLNLVAADTVIFYE 435 (673)
Q Consensus 367 ~~-----g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg-----~GiNL~~a~~VI~~D 435 (673)
.. ++.+..+.|+.+.......+.. +...+++.+....- ..+++...+.||+=+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 98 RFSKYMPNVKVAVFFGGLSIKKDEEVLKK----------------NCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp HHTTTCTTCCEEEECTTSCHHHHHHHHHH----------------SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHHHhc----------------CCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 33 7889999999887665544432 22346776655432 234566666666533
No 251
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=40.48 E-value=25 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.1
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
..+..++|||..-.........|...|++.+.+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 35678999999877778888899999999888988864
No 252
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=40.46 E-value=84 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=32.9
Q ss_pred CeEEEEec------CchHHHHHHHHHHhCCCc-EEEEeCCcCHHHHHHHH
Q 005858 346 HRVLLFAQ------MTQTLDILQDFLELRKYS-YERLDGSIRAEERFAAI 388 (673)
Q Consensus 346 ~kvlIFsq------~~~~ld~l~~~L~~~g~~-~~~i~G~~~~~~R~~~i 388 (673)
++|+||+. +=.......++|...|++ |..++=....+.+..+.
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~ 69 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK 69 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHH
Confidence 58999998 456788999999999995 88887666655555443
No 253
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=40.02 E-value=1.3e+02 Score=23.79 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVGL 423 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~Gi 423 (673)
.|..+..++.....+ ..+....+..+.++-.++...-.+.++.++.. .....++++|...... .
T Consensus 24 ~~~~v~~~~~~~~a~----~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~-----------~~~~~ii~~s~~~~~~-~ 87 (116)
T 3a10_A 24 EGYEIDTAENGEEAL----KKFFSGNYDLVILDIEMPGISGLEVAGEIRKK-----------KKDAKIILLTAYSHYR-S 87 (116)
T ss_dssp TTCEEEEESSHHHHH----HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHH-----------CTTCCEEEEESCGGGG-G
T ss_pred CCCEEEEeCCHHHHH----HHHhcCCCCEEEEECCCCCCCHHHHHHHHHcc-----------CCCCeEEEEECCcchH-H
Confidence 465555443322222 23344567777777655432233344444322 1344566665433222 2
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhh
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAH 451 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~ 451 (673)
....+...-++.-|+++....+++.++.
T Consensus 88 ~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 88 DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2222222234456788888888877664
No 254
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=39.83 E-value=94 Score=24.82 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=36.3
Q ss_pred CeEEEEecCc-hHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 346 HRVLLFAQMT-QTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 346 ~kvlIFsq~~-~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
.+|.||+... .......++|..+|++|..++=....+.++.+.+.-
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 4688998655 458889999999999999999888777776655443
No 255
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=39.69 E-value=1.1e+02 Score=25.81 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred CeEEEEecC------chHHHHHHHHHHhCCC-cEEEEeCCcCHHHHHHHHHhhc
Q 005858 346 HRVLLFAQM------TQTLDILQDFLELRKY-SYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 346 ~kvlIFsq~------~~~ld~l~~~L~~~g~-~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
++|+||+.. =.+.....+.|...|+ +|..++=....+-|..+ ..+.
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l-~~~s 72 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI-KDYS 72 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH-HHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH-HHhc
Confidence 599999763 3467778888888888 58888766666555544 4444
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=39.41 E-value=34 Score=43.45 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=41.5
Q ss_pred HHHHHHH--HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHHH
Q 005858 44 GLSWLIR--RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGWV 102 (673)
Q Consensus 44 gv~~l~~--~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W~ 102 (673)
.+.+++. -+..+.-.+|+-++|+|||..++.++...... .+++++|.-.....+|.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 4445554 34455667999999999999999998877532 45789998877777775
No 257
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=39.06 E-value=28 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=32.4
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
..+.+++|||............|...|+++..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35679999999888788888999999998888999864
No 258
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.98 E-value=18 Score=34.41 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.7
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..--|.|||.+++.++..+...+ +++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g---~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY---DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC---SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 45679999999999999886443 557777
No 259
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.83 E-value=27 Score=37.35 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
...+.+|..++|+|||..+-+++..+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999998888764
No 260
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=38.74 E-value=27 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=25.0
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
+....-|.|||.+++.++..+...+ +++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG---RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4455779999999999999886543 46777744
No 261
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.66 E-value=1.6e+02 Score=24.05 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=55.7
Q ss_pred HHHHHhCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecc
Q 005858 338 LKKLYNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTR 417 (673)
Q Consensus 338 l~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ 417 (673)
+..+...+..+..++.....+. .+....+..+.++-.++...-...++..+..+ ......+++++..
T Consensus 20 l~~~l~~~~~v~~~~~~~~a~~----~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~---------~~~~~pii~~s~~ 86 (133)
T 3nhm_A 20 LRLLLSGEFDCTTAADGASGLQ----QALAHPPDVLISDVNMDGMDGYALCGHFRSEP---------TLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHTTTSEEEEESSHHHHHH----HHHHSCCSEEEECSSCSSSCHHHHHHHHHHST---------TTTTCCEEEEESC
T ss_pred HHHHHhCCcEEEEECCHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC---------ccCCCCEEEEeCC
Confidence 3334445666665554433333 34556788888887665444445555554321 0135567777764
Q ss_pred ccccccCCCCCCeeEeeCCCCCcchHHHHhHhhhccC
Q 005858 418 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIG 454 (673)
Q Consensus 418 agg~GiNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 454 (673)
.-..-.....+...-++.-|+++..+.+++.++.+.+
T Consensus 87 ~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 87 APRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 3222222222222234556889999999988886543
No 262
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=38.58 E-value=27 Score=28.76 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=32.8
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
..+.+++|||..-.........|...|+++..++|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45678999999887788888999999999999999865
No 263
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=38.50 E-value=19 Score=35.55 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=20.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..|.+|..+.|+|||..+=+++..+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3568899999999999988777654
No 264
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=38.40 E-value=97 Score=25.41 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=44.6
Q ss_pred CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc-----cc-cCCCCCCeeEeeCCCCCcchH
Q 005858 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG-----VG-LNLVAADTVIFYEQDWNPQVD 443 (673)
Q Consensus 370 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg-----~G-iNL~~a~~VI~~D~~wnp~~~ 443 (673)
+..+.++-.++...-..+++.++.. .....+++++..... .. .....+...-++.-|.++..+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~-----------~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l 115 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEH-----------KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVL 115 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHT-----------TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-----------CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHH
Confidence 6677777776655555566666533 245567777654431 11 112233344456678889999
Q ss_pred HHHhHhhhccCCc
Q 005858 444 KQALQRAHRIGQM 456 (673)
Q Consensus 444 ~Qa~gR~~RiGQ~ 456 (673)
.+++.++...++.
T Consensus 116 ~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 116 TCFLTSLSNRQAE 128 (135)
T ss_dssp HHHHHHHSCCC--
T ss_pred HHHHHHHHhhccc
Confidence 9988888765543
No 265
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=38.12 E-value=29 Score=28.14 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.4
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
..+.++||||............|...|+++..++|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35678999999887788888999999999888999854
No 266
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=37.58 E-value=1.2e+02 Score=24.73 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=35.2
Q ss_pred CCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 345 GHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 345 g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
.++|+||+. +=.....+..+|...|++|..++=....+.+..+....
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457999987 22467888999999999999998877766565555444
No 267
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=37.57 E-value=29 Score=32.44 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
-.++...+|+|||..++..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 35778899999999988876554
No 268
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=37.50 E-value=62 Score=34.32 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+|..++|+|||..+-+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999999998888766
No 269
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=37.35 E-value=32 Score=34.30 Aligned_cols=42 Identities=24% Similarity=0.099 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHh----cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 38 KPHQVEGLSWLIRRY----LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 38 ~~~Q~~gv~~l~~~~----~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
++.....+.-++... ....+.+|.-+.|+|||..+-++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 455555444443322 234678999999999999998887765
No 270
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=37.09 E-value=1.1e+02 Score=26.52 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCeEEEEec------CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 334 LDLLLKKLYNSGHRVLLFAQ------MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 334 l~~ll~~~~~~g~kvlIFsq------~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
+.+.+..+... .+|+||+. +=.....+..+|...|++|..++=....+.+..+.+..
T Consensus 24 ~~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 24 TIEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 33444444443 37999987 44568899999999999999998776665555554433
No 271
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=37.04 E-value=40 Score=32.32 Aligned_cols=24 Identities=33% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.|.+|.-+.|+|||..+-+++..+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999888777655
No 272
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.84 E-value=33 Score=33.02 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=25.2
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
++..-.-|.|||.+++.++..+...+ +++|+|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLG---HDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 34566789999999999999886543 4677774
No 273
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=36.77 E-value=1.1e+02 Score=28.71 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=54.7
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh-------CCCeEEEEecCchHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN-------SGHRVLLFAQMTQTLDIL 361 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~-------~g~kvlIFsq~~~~ld~l 361 (673)
..++.|.+.+..++.. .+.......+|||..+ +.-++..+.. .+.++||.+........+
T Consensus 51 ~~~~~Q~~~i~~~~~g------------~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 118 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSG------------LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQV 118 (242)
T ss_dssp SCCHHHHHHHHHHHHT------------CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHH
Confidence 3567888777665532 1112223458999765 4445555442 466899999887665544
Q ss_pred ----HHHHHhCCCcEEEEeCCcCHHHHHHHH
Q 005858 362 ----QDFLELRKYSYERLDGSIRAEERFAAI 388 (673)
Q Consensus 362 ----~~~L~~~g~~~~~i~G~~~~~~R~~~i 388 (673)
..++...++.+..+.|+.+.......+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEEECCCChHHHHHHh
Confidence 444455689999999998876554433
No 274
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=36.75 E-value=30 Score=33.16 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.9
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+....-|.|||.+++.++..+...+ +++|+|
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g---~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG---KKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CcEEEE
Confidence 4455779999999999999887543 457776
No 275
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=36.17 E-value=1.2e+02 Score=34.67 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=50.1
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC-----CCeEEEEecCchHHHHHHH
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS-----GHRVLLFAQMTQTLDILQD 363 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~-----g~kvlIFsq~~~~ld~l~~ 363 (673)
..+++.|...+..++.. .+.......++||.......+...... +.++||.+.....+..+.+
T Consensus 247 ~~l~~~Q~~~i~~~l~~------------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 247 KKARSYQIELAQPAING------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -CCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC------------CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHH
Confidence 34667888777665432 112223445899987655544444333 7899999998766555444
Q ss_pred ----HHHhCCCcEEEEeCCcCHHHH
Q 005858 364 ----FLELRKYSYERLDGSIRAEER 384 (673)
Q Consensus 364 ----~L~~~g~~~~~i~G~~~~~~R 384 (673)
++...++.+..++|+.+...+
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVS 339 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----C
T ss_pred HHHHhcccCCceEEEEeCCcchhhh
Confidence 444448999999999875543
No 276
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.05 E-value=59 Score=26.81 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=9.9
Q ss_pred eCCCCCcchHHHHhHhhhcc
Q 005858 434 YEQDWNPQVDKQALQRAHRI 453 (673)
Q Consensus 434 ~D~~wnp~~~~Qa~gR~~Ri 453 (673)
+.-|+++..+.+++.++.+.
T Consensus 106 l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 106 LEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ECSSCCHHHHHHHHHHHHC-
T ss_pred hhCCCCHHHHHHHHHHHcCC
Confidence 33455555555555555443
No 277
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.97 E-value=29 Score=34.38 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.0
Q ss_pred CeEEECCCcchHHHHHHHHHHHhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.++..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 589999999999999988887763
No 278
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=35.62 E-value=33 Score=33.19 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=24.5
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
+..-.-|.|||.+++.++..+...+ .++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG---KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 4556789999999999998887543 4577774
No 279
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=35.55 E-value=1.4e+02 Score=26.95 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHH-----hCCCeEEEEecCchHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLY-----NSGHRVLLFAQMTQTLDILQD 363 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~-----~~g~kvlIFsq~~~~ld~l~~ 363 (673)
..++.|.+.+..++.. .+-......++||... +..++..+. ..+.++||.+........+.+
T Consensus 23 ~~~~~Q~~~i~~~~~~------------~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~ 90 (207)
T 2gxq_A 23 TPTPIQAAALPLALEG------------KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90 (207)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC------------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHH
Confidence 4567888887765542 1111223458999876 444444442 356789999998887777777
Q ss_pred HHHhC--CCcEEEEeCCcCHHHH
Q 005858 364 FLELR--KYSYERLDGSIRAEER 384 (673)
Q Consensus 364 ~L~~~--g~~~~~i~G~~~~~~R 384 (673)
.+... ++.+..+.|+.+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
T 2gxq_A 91 ELTAVAPHLKVVAVYGGTGYGKQ 113 (207)
T ss_dssp HHHHHCTTSCEEEECSSSCSHHH
T ss_pred HHHHHhhcceEEEEECCCChHHH
Confidence 66654 4678888888765443
No 280
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=35.50 E-value=47 Score=33.87 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
.+..-.-|.|||.++++++..+...+ +++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG---LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS---CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 46667899999999999998887543 4577774
No 281
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=35.08 E-value=24 Score=34.20 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 62 de~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..-|.|||.+++.++..+... .+++|+|
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~---G~~Vlli 35 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAM---GKTIMVV 35 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHC---CCcEEEE
Confidence 467999999999999888643 3456776
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=35.04 E-value=54 Score=40.95 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=33.3
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHH
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDG 100 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~ 100 (673)
+..+...+|+-++|+|||..++.++...... .++++++.-.....+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDP 774 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHH
Confidence 3445568999999999999999998877542 346788766544433
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=34.96 E-value=1.1e+02 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=25.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+++-..|+|||.++..++.++...+ ..+++|+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 45666789999999999998886432 44677765
No 284
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=34.73 E-value=43 Score=27.33 Aligned_cols=38 Identities=8% Similarity=0.248 Sum_probs=31.8
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+..+||||..-.........|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 56678999999877788888899999996 778889865
No 285
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=34.59 E-value=3.1e+02 Score=26.58 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH---
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE--- 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~--- 366 (673)
.+.+.|.+.+..++.. .+-......++||.......+. ..+.++||.+........+.+.+.
T Consensus 16 ~l~~~Q~~~i~~i~~~------------~~~lv~~~TGsGKT~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQG------------KNVVVRAKTGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC------------CCEEEEcCCCCcHHHHHHHHHH---hhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 3577888888766532 1112223457999875544333 247899999998877666666555
Q ss_pred -hCCCcEEEEeCCcCHHHHH
Q 005858 367 -LRKYSYERLDGSIRAEERF 385 (673)
Q Consensus 367 -~~g~~~~~i~G~~~~~~R~ 385 (673)
..+..+..+.|+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQI 100 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHH
T ss_pred hhcCCcEEEEECCcchHHHH
Confidence 3467888999988865543
No 286
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=34.59 E-value=69 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHH-HhCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 336 LLLKKL-YNSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 336 ~ll~~~-~~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+..+ ...+.+++|||..-.........|...|++ +..+ |+..
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 334443 245678999999877778888899999996 4444 6643
No 287
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=34.39 E-value=1e+02 Score=32.95 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC-----CCeEEEEecCchHHHHH---
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS-----GHRVLLFAQMTQTLDIL--- 361 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~-----g~kvlIFsq~~~~ld~l--- 361 (673)
..++.|.+.+..++.. .+.......++||.......+...... +.++||.+........+
T Consensus 4 ~~~~~Q~~~i~~~~~~------------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 71 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG------------KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATV 71 (555)
T ss_dssp CCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC------------CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHH
Confidence 3566787777665421 111222445899987654444433332 77999999987655444
Q ss_pred -HHHHHhCCCcEEEEeCCcCHHH
Q 005858 362 -QDFLELRKYSYERLDGSIRAEE 383 (673)
Q Consensus 362 -~~~L~~~g~~~~~i~G~~~~~~ 383 (673)
..++...++.+..++|+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~g~~~~~~ 94 (555)
T 3tbk_A 72 FSRYFERLGYNIASISGATSDSV 94 (555)
T ss_dssp HHHHHHTTTCCEEEECTTTGGGS
T ss_pred HHHHhccCCcEEEEEcCCCcchh
Confidence 4444445899999999986543
No 288
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.28 E-value=1.5e+02 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=39.5
Q ss_pred EEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccc
Q 005858 348 VLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQ 394 (673)
Q Consensus 348 vlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~ 394 (673)
.+|||.-+..+..|..-+...|..++.+......+.|..-++.|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 57888888888888888888899999999998888888889999733
No 289
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=34.26 E-value=36 Score=27.02 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=30.0
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
.+++|||+...........|...|+++..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999887788888889999999777888864
No 290
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=34.15 E-value=1.2e+02 Score=30.49 Aligned_cols=55 Identities=24% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCcchHHHHHHHHHHHhhhcC---------CCCCCEEEEECcc----cHHHHHHH---HHHHCCCCeEEEE
Q 005858 63 EMGLGKTLQAISFLSYLKFSQ---------MSPGPFLVLCPLS----VTDGWVSE---MAKFTPKLEVLRY 117 (673)
Q Consensus 63 e~GlGKTl~ai~~i~~l~~~~---------~~~~~~LIV~P~s----ll~~W~~E---~~k~~p~~~v~~~ 117 (673)
-=|+|||-.++.++..++..+ +..+..++|.+.+ ...+-.+| +.+.+|+..+++.
T Consensus 46 vGGTGKTP~vi~L~~~L~~~~~~ilsRGYg~~~~~~~~v~~~~~~~~~~~~~GDEp~lla~~~~~~~v~v~ 116 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLKDKRVCILSRGYKRKSKGTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVAS 116 (315)
T ss_dssp SSCCSHHHHHHHHHHHTTTSCEEEEECCCSCSSCSEEEEEETTEECSCHHHHCHHHHHHHHHCTTSEEEEE
T ss_pred eCCCChHHHHHHHHHHHhhcCceEEeecccccccCceEEeecccccCCcccccCHHHHHHHhCCCceEEEe
Confidence 458999999999999885321 1112235555542 23444555 4566777776644
No 291
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=33.35 E-value=49 Score=32.25 Aligned_cols=43 Identities=23% Similarity=0.124 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHHhc-----------CCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 37 LKPHQVEGLSWLIRRYL-----------LGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~-----------~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.++..+.-+...+. -..|.+|.-+.|+|||..+-+++..+
T Consensus 44 g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 44 GAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 45666666655554432 13458999999999999888777655
No 292
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=32.91 E-value=1.1e+02 Score=32.98 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=69.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhCC
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELRK 369 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~g 369 (673)
.+.+.|.+.+..++... +-......++||-... ++..+.. +.++||.+.....+....+.|...|
T Consensus 25 ~~r~~Q~~~i~~il~g~------------d~lv~apTGsGKTl~~--~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~g 89 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGR------------DCLVVMPTGGGKSLCY--QIPALLL-NGLTVVVSPLISLMKDQVDQLQANG 89 (523)
T ss_dssp SCCTTHHHHHHHHHTTC------------CEEEECSCHHHHHHHH--HHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCC------------CEEEECCCCcHHHHHH--HHHHHHh-CCCEEEECChHHHHHHHHHHHHHcC
Confidence 35667888777665421 1122234578887532 2333323 4589999999888887888888889
Q ss_pred CcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc
Q 005858 370 YSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG 419 (673)
Q Consensus 370 ~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag 419 (673)
+++..++|..+..++......+. .+...++++++...
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~ilv~Tpe~l 126 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGCR-------------TGQIRLLYIAPERL 126 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH-------------HTCCSEEEECHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHh-------------cCCCCEEEECHHHH
Confidence 99999999999888877777665 24566777776544
No 293
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=32.88 E-value=2.5e+02 Score=28.09 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh--CCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN--SGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~--~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
.+.+.|.+.+..++... +.......++||... +..++..+.. .+.++||.+........+.+.+.
T Consensus 43 ~~~~~Q~~~i~~i~~~~------------~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~ 110 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGH------------DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVM 110 (394)
T ss_dssp SCCHHHHHHHHHHHHTC------------CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC------------CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 45678888777665421 111223457889865 3444444332 46699999998877666555544
Q ss_pred ----hCCCcEEEEeCCcCHHHHHHHHH
Q 005858 367 ----LRKYSYERLDGSIRAEERFAAIR 389 (673)
Q Consensus 367 ----~~g~~~~~i~G~~~~~~R~~~i~ 389 (673)
..++.+..+.|+.+..+....+.
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 137 (394)
T 1fuu_A 111 ALAFHMDIKVHACIGGTSFVEDAEGLR 137 (394)
T ss_dssp HHTTTSCCCEEEECSSCCHHHHHHHHH
T ss_pred HHhccCCeeEEEEeCCCchHHHHhhcC
Confidence 34788999999988766554443
No 294
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=32.77 E-value=28 Score=35.09 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=23.1
Q ss_pred EECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 60 LGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 60 Lade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
++--=|.|||.+++-++..|...+ +++|+|
T Consensus 53 IaGKGGVGKTTtavNLA~aLA~~G---kkVllI 82 (314)
T 3fwy_A 53 VYGKGGIGKSTTSSNLSAAFSILG---KRVLQI 82 (314)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EECCCccCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 345679999999999998887554 457777
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=32.59 E-value=60 Score=36.22 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=58.0
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhcccccccccc--ccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHh
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSL--QNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l--~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
.+.+.|++.....+... ...+ .-+++||...+..++..+...|.+|||-+.....+|.+.+.|..
T Consensus 189 ~LN~~Q~~AV~~al~~~-------------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQK-------------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCS-------------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCC-------------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 35678887666554311 1111 22589999999999999999999999999999999999999998
Q ss_pred CCCcEEEEe
Q 005858 368 RKYSYERLD 376 (673)
Q Consensus 368 ~g~~~~~i~ 376 (673)
.+.+++|+.
T Consensus 256 ~~~~ilRlG 264 (646)
T 4b3f_X 256 CKQRILRLG 264 (646)
T ss_dssp TTCCEEECS
T ss_pred cCCceEEec
Confidence 899998874
No 296
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.38 E-value=77 Score=25.88 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=51.8
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..|..|..++.....+ ..+....+..+.++-.++...-..+++..+..+ ......+++++......-
T Consensus 25 ~~g~~v~~~~~~~~a~----~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~---------~~~~~~ii~~s~~~~~~~ 91 (127)
T 3i42_A 25 MLGFQADYVMSGTDAL----HAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP---------MEKTSKFVAVSGFAKNDL 91 (127)
T ss_dssp HTTEEEEEESSHHHHH----HHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC---------CSSCCEEEEEECC-CTTC
T ss_pred HcCCCEEEECCHHHHH----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh---------ccCCCCEEEEECCcchhH
Confidence 3465555554433333 344556788888886665444444454444210 024556666665443322
Q ss_pred cCCCCCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 423 LNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 423 iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
.....+...-++.-|.++..+.+++.++++-++.
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 92 GKEACELFDFYLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp CHHHHHHCSEEEESSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCCC
Confidence 2211111222566788999999999988776543
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=32.38 E-value=61 Score=33.47 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll~~W 101 (673)
.+.++++.-.+|+|||..+-.++..+... ..+++|+=|..-...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~ 78 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPEREYKEM 78 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCCSHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcCHHHH
Confidence 46788999999999999887777665432 3457777776544443
No 298
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=32.35 E-value=2.8e+02 Score=28.71 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHhC-------CCeEEEEecCchHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYNS-------GHRVLLFAQMTQTLDIL 361 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~~-------g~kvlIFsq~~~~ld~l 361 (673)
..++.|...+..++.. .+.......+|||..+ +.-++..+... +.++||.+.....+..+
T Consensus 78 ~pt~iQ~~ai~~i~~g------------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~ 145 (434)
T 2db3_A 78 IPTPIQKCSIPVISSG------------RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQI 145 (434)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC------------CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHH
Confidence 3567888777655431 1122234568999874 44555555443 45899999988777666
Q ss_pred HHHHHh----CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc-----cccCCCCCCeeE
Q 005858 362 QDFLEL----RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG-----VGLNLVAADTVI 432 (673)
Q Consensus 362 ~~~L~~----~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg-----~GiNL~~a~~VI 432 (673)
.+.+.. .++.+..+.|+.+.......+ . .+..+++.++...- ..+++...+.||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~--------------~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 146 FNEARKFAFESYLKIGIVYGGTSFRHQNECI---T--------------RGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp HHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T--------------TCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred HHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h--------------cCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 665543 467788889988865443322 2 33456666654321 124566666666
Q ss_pred e
Q 005858 433 F 433 (673)
Q Consensus 433 ~ 433 (673)
+
T Consensus 209 l 209 (434)
T 2db3_A 209 L 209 (434)
T ss_dssp E
T ss_pred E
Confidence 4
No 299
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=32.27 E-value=29 Score=34.14 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=22.3
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
...-|.|||.+++.++..+...+ .++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G---~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG---KKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 34679999999999999887543 456766
No 300
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.19 E-value=58 Score=26.52 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.4
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcCH
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIRA 381 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~~ 381 (673)
..+..++|||............|...|++ +..++|+...
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 56789999999877788888889999996 7789998653
No 301
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=32.14 E-value=29 Score=34.50 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=22.8
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+.--|.|||..++.++..+...+ +++|+|
T Consensus 47 ~~KGGvGKTT~a~nLA~~La~~G---~~Vlli 75 (307)
T 3end_A 47 YGKGGIGKSTTSSNLSAAFSILG---KRVLQI 75 (307)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred ECCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 36889999999999999887543 456776
No 302
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.69 E-value=40 Score=34.01 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.9
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+..-.-|.|||.++++++..+... .+++|+|-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARS---GKKTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeC
Confidence 3556688999999999999888654 345777744
No 303
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=31.59 E-value=44 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=23.7
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+..-.-|.|||.+++.++..+... ..+++|+|
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~--~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE--PDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS--TTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC--cCCCEEEE
Confidence 445567999999999999988644 13456776
No 304
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=31.57 E-value=80 Score=28.81 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=48.3
Q ss_pred cccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh------CCCeEEEEecCchHHHH-
Q 005858 288 LTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN------SGHRVLLFAQMTQTLDI- 360 (673)
Q Consensus 288 ~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~------~g~kvlIFsq~~~~ld~- 360 (673)
...+.+.|.+.+..++.. .+.......++||.......+..... .+.++||.+......+.
T Consensus 31 ~~~l~~~Q~~~i~~~~~~------------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~ 98 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG------------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQL 98 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT------------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcC------------CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHH
Confidence 345778899888766532 11122234578888766555544322 26799999988766554
Q ss_pred HHHHHHh---CCCcEEEEeCCcCH
Q 005858 361 LQDFLEL---RKYSYERLDGSIRA 381 (673)
Q Consensus 361 l~~~L~~---~g~~~~~i~G~~~~ 381 (673)
+.+.+.. .++.+..+.|+...
T Consensus 99 ~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 99 FRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHTHHHHHTTTSCEEECCC---C
T ss_pred HHHHHHHHhccCceEEEEeCCccc
Confidence 4444332 26788888887643
No 305
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.40 E-value=33 Score=32.04 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=21.4
Q ss_pred ccEEEEcCCccccCc---ccHHHHHHHhhcC----CCcEEEEecCC
Q 005858 171 WCYTIIDEAQRLKNP---SSVLYNVLREHFL----MPRRLLMTGTP 209 (673)
Q Consensus 171 ~~~vIvDEaH~~KN~---~s~~~~~l~~~~~----~~~rllLTGTP 209 (673)
-.+|||||||.+-+. .....+.+.. +. ...-++|.|.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~-l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQW-LNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHG-GGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHH-HHhcCcCCeEEEEECCC
Confidence 578999999998321 1211122222 22 22357888887
No 306
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=31.14 E-value=3.2e+02 Score=27.44 Aligned_cols=119 Identities=10% Similarity=0.098 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHH-HHHHHHh--CCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDL-LLKKLYN--SGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~-ll~~~~~--~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
.+.+.|.+.+..++.. .+.......++||...... ++..+.. .+.++||.+........+.+.+.
T Consensus 43 ~~~~~Q~~~i~~i~~~------------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 110 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITG------------RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVR 110 (400)
T ss_dssp SCCHHHHHHHHHHHHT------------CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC------------CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHH
Confidence 4677888887766532 1111223458999875433 3333322 45689999998777665555554
Q ss_pred ----hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccc-----ccccCCCCCCeeEeeCCC
Q 005858 367 ----LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAG-----GVGLNLVAADTVIFYEQD 437 (673)
Q Consensus 367 ----~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~ag-----g~GiNL~~a~~VI~~D~~ 437 (673)
..++.+..+.|+........ ... ....+++.++... ....++...+.||+=+.+
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~---~~~--------------~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 111 TLGKHCGISCMVTTGGTNLRDDIL---RLN--------------ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp HHTTTTTCCEEEECSSSCHHHHHH---HTT--------------SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred HHhcccCceEEEEeCCcchHHHHH---Hhc--------------CCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 33788889999887543321 222 3445666665432 123455666666654443
No 307
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=30.90 E-value=1.9e+02 Score=23.76 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=52.0
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..|..+..+......+ +.+....+..+.++-.++...-..+++.++..+. .....+++++......-
T Consensus 28 ~~g~~v~~~~~~~~a~----~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~---------~~~~~ii~~s~~~~~~~ 94 (140)
T 3grc_A 28 KGGFDSDMVHSAAQAL----EQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSR---------TRDLAIVVVSANAREGE 94 (140)
T ss_dssp HTTCEEEEECSHHHHH----HHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGG---------GTTCEEEEECTTHHHHH
T ss_pred HCCCeEEEECCHHHHH----HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcc---------cCCCCEEEEecCCChHH
Confidence 3455655544433323 3344556777777766554444455555553100 24556666665432211
Q ss_pred c--CCCCCCeeEeeCCCCCcchHHHHhHhhhccC
Q 005858 423 L--NLVAADTVIFYEQDWNPQVDKQALQRAHRIG 454 (673)
Q Consensus 423 i--NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 454 (673)
+ ....+...-++.-|.++..+.+++.++.+-+
T Consensus 95 ~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 95 LEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp HHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 1 2223333344556788888888888776543
No 308
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=30.87 E-value=3.3e+02 Score=25.40 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh-----------CCCeEEEEecCchH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN-----------SGHRVLLFAQMTQT 357 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~-----------~g~kvlIFsq~~~~ 357 (673)
..++.|.+.+..++.. .+.......++||... +.-++..+.. .+.++||.+.....
T Consensus 45 ~~~~~Q~~~i~~i~~~------------~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 112 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEH------------RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTREL 112 (253)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHH
Confidence 4678898888766542 1111223458999865 3344444432 23589999998776
Q ss_pred HHHHHHHHH----hCCCcEEEEeCCcCHHHH
Q 005858 358 LDILQDFLE----LRKYSYERLDGSIRAEER 384 (673)
Q Consensus 358 ld~l~~~L~----~~g~~~~~i~G~~~~~~R 384 (673)
...+.+.+. ..++.+..+.|+.+....
T Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (253)
T 1wrb_A 113 AIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143 (253)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECSSSCSHHH
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHH
Confidence 655555443 446788888888765443
No 309
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.77 E-value=47 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
|..-..|.|||.+++.++..+...+ +++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G---~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD---QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC---CcEEEEE
Confidence 3445679999999999998886543 5577773
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.66 E-value=32 Score=31.01 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+...+|.-.+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999998888766
No 311
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=30.25 E-value=53 Score=33.16 Aligned_cols=41 Identities=32% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHh----cCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 39 PHQVEGLSWLIRRY----LLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 39 ~~Q~~gv~~l~~~~----~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
++.+..+...+..- ......+|..+.|+|||..+-+++..+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45666666655432 112468999999999999988877765
No 312
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.12 E-value=49 Score=35.00 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=0.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhc-CCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFS-QMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~-~~~~~~~LIV~ 93 (673)
.+++...|.|||.++..++.++... + +++++|.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G---~kVllvd 136 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHK---KKVLVVS 136 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSC---CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC---CeEEEEe
No 313
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=30.08 E-value=51 Score=43.24 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECccc
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSV 97 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sl 97 (673)
..+++..=+-.|.+....+.|.+|..++|+|||...=.++..+....+......++-|+++
T Consensus 905 ~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 905 MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 3455554444555555567889999999999999876666655433333334567778755
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=30.04 E-value=34 Score=31.46 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+...+|.-.+|+|||..+-.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5567899999999999998888766
No 315
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.93 E-value=85 Score=35.73 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.0
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+.+|..++|+|||..+-++...+. ....|++.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF---GDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEE
Confidence 478999999999999998887763 223555544
No 316
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=29.28 E-value=97 Score=24.34 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=34.7
Q ss_pred eEEEEecCc-hHH------HHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 347 RVLLFAQMT-QTL------DILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 347 kvlIFsq~~-~~l------d~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
+|+||+... ... .....+|...|++|..++=....+.|..+.+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 688887643 345 6888899999999999988877777766665553
No 317
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.21 E-value=39 Score=32.57 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=22.7
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.-.-|.|||..++.++..+...+ .++|+|
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g---~~Vlli 41 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLG---KRVLLV 41 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHCC---CCEEEE
Confidence 34679999999999999886543 467777
No 318
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=29.18 E-value=52 Score=30.60 Aligned_cols=41 Identities=27% Similarity=0.463 Sum_probs=28.5
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE--ECcccHHHHHH
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL--CPLSVTDGWVS 103 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV--~P~sll~~W~~ 103 (673)
+....-|.|||..++.++..+...+ ++|+| -|...+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g----~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG----ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS----CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC----CEEEEECCCCCCHHHHhc
Confidence 4455679999999999998886432 46775 35555566654
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.90 E-value=44 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+...+|.-.+|+|||.++-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568899999999999988877665
No 320
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=28.89 E-value=34 Score=35.15 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.7
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 62 de~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.--|.|||.+++.++..+... .+++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~---G~rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQ---GKRVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhC---CCcEEEE
Confidence 356999999999999888653 3567877
No 321
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=28.72 E-value=1.3e+02 Score=31.87 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC-eEEEEecCchHHHHHHHHHHhC
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH-RVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~-kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
++++.|...+..++.. .+..-....++||.......+......+. ++||.+..+.......+.+...
T Consensus 113 ~l~~~Q~~ai~~~~~~------------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVN------------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHH------------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc------------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 5678898888776542 11122244589999887666665554444 9999999887777676666654
Q ss_pred ----CCcEEEEeCCcCHH
Q 005858 369 ----KYSYERLDGSIRAE 382 (673)
Q Consensus 369 ----g~~~~~i~G~~~~~ 382 (673)
+..+..+.|+.+..
T Consensus 181 ~~~~~~~v~~~~~~~~~~ 198 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKD 198 (510)
T ss_dssp TSSCGGGEEECGGGCCTT
T ss_pred hcCCccceEEEecCCccc
Confidence 24678888876643
No 322
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=28.45 E-value=50 Score=32.33 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=21.9
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 62 de~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
-..|.|||.+++.++..+...+ +++|+|
T Consensus 90 ~kgG~GKTt~a~nLA~~lA~~G---~rVLLI 117 (271)
T 3bfv_A 90 EAPGAGKSTIAANLAVAYAQAG---YKTLIV 117 (271)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 4679999999999998886533 457776
No 323
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.43 E-value=1.9e+02 Score=24.80 Aligned_cols=47 Identities=11% Similarity=-0.041 Sum_probs=37.9
Q ss_pred CeEEEEe----cCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhc
Q 005858 346 HRVLLFA----QMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFS 392 (673)
Q Consensus 346 ~kvlIFs----q~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~ 392 (673)
.|++++| .+..-+.++..+|+..||.+..+-..++.++-.+...+.+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~ 54 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK 54 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC
Confidence 5788887 3445578999999999999999988999888777766665
No 324
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=28.28 E-value=56 Score=28.44 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=32.1
Q ss_pred hCCCeEEEEecCc--hHHHHHHHHHHhCCCcEEEEeCCcCH
Q 005858 343 NSGHRVLLFAQMT--QTLDILQDFLELRKYSYERLDGSIRA 381 (673)
Q Consensus 343 ~~g~kvlIFsq~~--~~ld~l~~~L~~~g~~~~~i~G~~~~ 381 (673)
..+.++||||... .........|...|+++..++|++..
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 3567999999987 46778888999999998889998653
No 325
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=28.22 E-value=40 Score=28.48 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCCeEEEEecCchH--HHHHHHHHHhCCCcEEEEeCCcC
Q 005858 344 SGHRVLLFAQMTQT--LDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 344 ~g~kvlIFsq~~~~--ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
.+.++||||..... .......|...|+++..++|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46789999998765 67888889999999888899865
No 326
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=28.13 E-value=80 Score=27.43 Aligned_cols=38 Identities=3% Similarity=-0.079 Sum_probs=30.1
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+.++||||..-.........|...|+. +..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45678999999877777888889999995 888999875
No 327
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=27.97 E-value=49 Score=28.33 Aligned_cols=38 Identities=3% Similarity=0.093 Sum_probs=32.2
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+.++||||+.-.........|...|+. +..++|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 46789999999887777888889999996 888999865
No 328
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.94 E-value=1.7e+02 Score=27.02 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=41.5
Q ss_pred CCCeEEEEec----CchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccc
Q 005858 344 SGHRVLLFAQ----MTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQ 394 (673)
Q Consensus 344 ~g~kvlIFsq----~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~ 394 (673)
.+.++|++|- +.--+.++...|+.+|+.+..+.-.++.++-...+...+.+
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d 141 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPD 141 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCS
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC
Confidence 3568999984 34557899999999999999999899998888888888644
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=27.92 E-value=46 Score=30.12 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=21.0
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+...+|.-.+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888899999999988877665
No 330
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=27.83 E-value=22 Score=35.97 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+.+|..++|+|||..+-++...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4579999999999999998888765
No 331
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.72 E-value=50 Score=37.71 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=37.8
Q ss_pred cccCCcHHHHHHHHHHHHhCCCeEEEEec--Cch----HHHHHHHHHHhCCCcEEEEeC--CcCHHHHHHHHHhhc
Q 005858 325 NTASGKLVVLDLLLKKLYNSGHRVLLFAQ--MTQ----TLDILQDFLELRKYSYERLDG--SIRAEERFAAIRHFS 392 (673)
Q Consensus 325 ~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq--~~~----~ld~l~~~L~~~g~~~~~i~G--~~~~~~R~~~i~~F~ 392 (673)
..+.||..+...+...+...+..++.+.- +.. ....+...+....+.++.+|. ..+..-...+..-+.
T Consensus 529 p~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 604 (758)
T 3pxi_A 529 PTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLE 604 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhc
Confidence 45788888887777776655555554431 111 122444556666777888885 445444444444443
No 332
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=27.71 E-value=57 Score=32.26 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=24.2
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+|..-..|.|||.+++.++..+... .+++|+|
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~---G~rVLLI 127 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQT---NKRVLLI 127 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhC---CCCEEEE
Confidence 3455678999999999999888643 3467777
No 333
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.66 E-value=71 Score=29.73 Aligned_cols=35 Identities=17% Similarity=-0.026 Sum_probs=27.1
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.+..++....|-|||..|++++......+ .+++|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 45788889999999999999887665333 467777
No 334
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=27.65 E-value=58 Score=32.01 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=25.6
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCCCCEEEE--ECcccHHHH
Q 005858 62 DEMGLGKTLQAISFLSYLKFSQMSPGPFLVL--CPLSVTDGW 101 (673)
Q Consensus 62 de~GlGKTl~ai~~i~~l~~~~~~~~~~LIV--~P~sll~~W 101 (673)
.--|.|||.+++.++..+...+ .++|+| -|......|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G---~rVlliD~D~q~~~~~~ 82 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN---LKVLMIDKDLQATLTKD 82 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhCC---CeEEEEeCCCCCCHHHH
Confidence 4789999999999998886533 457775 344444444
No 335
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=27.40 E-value=61 Score=28.73 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHHhC
Q 005858 328 SGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLELR 368 (673)
Q Consensus 328 s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~~~ 368 (673)
..+...+..|+.+....|.||+|.|.....++.|.+.|-..
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 34677888999999999999999999999999999999644
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=27.21 E-value=60 Score=29.23 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=20.4
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKF 81 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~ 81 (673)
..+|.-.+|+|||.++-.+...+..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578889999999999888877753
No 337
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.12 E-value=1.2e+02 Score=23.76 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=44.3
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..|..+..++.....++. +....+..+.++-.++...-...++..+... ......+++++......
T Consensus 23 ~~g~~v~~~~~~~~~~~~----l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~---------~~~~~~ii~~~~~~~~~- 88 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQ----LDLLQPIVILMAWPPPDQSCLLLLQHLREHQ---------ADPHPPLVLFLGEPPVD- 88 (119)
T ss_dssp HTTCEEEEESCHHHHHHH----HHHHCCSEEEEECSTTCCTHHHHHHHHHHTC---------CCSSCCCEEEESSCCSS-
T ss_pred hCCcEEEEecCHHHHHHH----HHhcCCCEEEEecCCCCCCHHHHHHHHHhcc---------ccCCCCEEEEeCCCCch-
Confidence 356666554443333333 3334566777765554322233344433210 01334455555443322
Q ss_pred cCCCCCCeeEeeCCCCCcchHHHHhHhhhc
Q 005858 423 LNLVAADTVIFYEQDWNPQVDKQALQRAHR 452 (673)
Q Consensus 423 iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 452 (673)
....+...-++..|.++....+++.++.+
T Consensus 89 -~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 89 -PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp -HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred -hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 22222222344557778777777776643
No 338
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.09 E-value=77 Score=42.26 Aligned_cols=65 Identities=20% Similarity=0.126 Sum_probs=45.0
Q ss_pred cCCCcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcccH
Q 005858 34 TAELKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLSVT 98 (673)
Q Consensus 34 ~~~L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~sll 98 (673)
+....|.|..=+-.|.+......|.+|..++|+|||..-=.+...+....+.....-++-|+++-
T Consensus 885 ~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait 949 (3245)
T 3vkg_A 885 HLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAIT 949 (3245)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSC
T ss_pred CCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCc
Confidence 34455666666656777777788999999999999997666666654433333345678898653
No 339
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=27.04 E-value=1.8e+02 Score=23.54 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=16.6
Q ss_pred eeCCCCCcchHHHHhHhhhccCCc
Q 005858 433 FYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 433 ~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
++.-|.++....+++.++.+.++.
T Consensus 103 ~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 103 ILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTC-
T ss_pred eEeCCCCHHHHHHHHHHHHhcCCC
Confidence 455677888888888888775543
No 340
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=26.93 E-value=57 Score=32.95 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=25.0
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
.+..-.-|.|||.+++.++..+...+ +++|+|
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G---~rVllv 53 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR---SSVLLI 53 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS---SCEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 56677889999999999998886433 457776
No 341
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.80 E-value=1.8e+02 Score=23.55 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=23.6
Q ss_pred ccCCCccEEEEcCCccccCcccHHHHHHHhhcCCCcEEEEecCC
Q 005858 166 LSQIPWCYTIIDEAQRLKNPSSVLYNVLREHFLMPRRLLMTGTP 209 (673)
Q Consensus 166 l~~~~~~~vIvDEaH~~KN~~s~~~~~l~~~~~~~~rllLTGTP 209 (673)
+....+|+||+|-.-- ....-...+.++...+....+++|+.+
T Consensus 47 l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 47 LGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 3455678888884311 111233445555544455678888875
No 342
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=26.72 E-value=48 Score=32.57 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=26.8
Q ss_pred ECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE--C-cccHHHHH
Q 005858 61 GDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC--P-LSVTDGWV 102 (673)
Q Consensus 61 ade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~--P-~sll~~W~ 102 (673)
.-.-|.|||.+++.++..+...+ .++|+|= | ...+..|.
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGG---AKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTT---CCEEEEECCTTTCHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCCCCHHHHh
Confidence 35679999999999999887543 4567762 3 34455554
No 343
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=26.62 E-value=1.2e+02 Score=29.29 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred hcCCCCeEEECCCcchHHHHHHHHHHHhhhcCC--------CCCCEEEEECcccHHHH
Q 005858 52 YLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQM--------SPGPFLVLCPLSVTDGW 101 (673)
Q Consensus 52 ~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~--------~~~~~LIV~P~sll~~W 101 (673)
+..|.-.+|.-+.|+|||..+..++..+. .+. ..++++++.......+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 34455678899999999999988887554 220 12456666554444443
No 344
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=26.55 E-value=46 Score=34.93 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~s 96 (673)
..++++...+|+|||..+-.++..+... ..+++|+=|+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 4678999999999999865566555432 24577777775
No 345
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.41 E-value=65 Score=32.01 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=24.2
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
-.++....|.|||.++..++..+....+ +.++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 3456667999999999988887764222 3456654
No 346
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=26.23 E-value=2.3e+02 Score=27.95 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh--CCCeEEEEecCchHHHHHHHHHHh
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN--SGHRVLLFAQMTQTLDILQDFLEL 367 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~--~g~kvlIFsq~~~~ld~l~~~L~~ 367 (673)
.+++.|.+.+..++... .+.......++||.......+..+.. .+.++||.+........+.+.+..
T Consensus 28 ~~~~~Q~~~i~~~~~~~-----------~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDE-----------YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp SCCHHHHHHHHHHHHTC-----------SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-----------CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 35678888777655320 11111234589998765554444332 477999999987766665555543
Q ss_pred ----CCCcEEEEeCCcCHHHHHHH
Q 005858 368 ----RKYSYERLDGSIRAEERFAA 387 (673)
Q Consensus 368 ----~g~~~~~i~G~~~~~~R~~~ 387 (673)
.++.+..+.|+.........
T Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~ 120 (367)
T 1hv8_A 97 LKGNKNLKIAKIYGGKAIYPQIKA 120 (367)
T ss_dssp HHCSSCCCEEEECTTSCHHHHHHH
T ss_pred HhCCCCceEEEEECCcchHHHHhh
Confidence 47788899998876554433
No 347
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=26.02 E-value=52 Score=28.36 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=31.9
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+..+||||............|...|+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 45779999999887778888889999995 888999965
No 348
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=25.91 E-value=5.2e+02 Score=25.96 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=66.9
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHhC--------------------CCeE
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYNS--------------------GHRV 348 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~~--------------------g~kv 348 (673)
..++.|...+..++.. .+-......++||..+ +.-++..+... +.++
T Consensus 37 ~~~~~Q~~~i~~i~~~------------~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEK------------RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPIS 104 (417)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSE
T ss_pred CCCHHHHHHHHHHccC------------CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccE
Confidence 4677888877655431 1112223458999863 44455544332 2479
Q ss_pred EEEecCchHHHHHHHHHH----hCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccc----
Q 005858 349 LLFAQMTQTLDILQDFLE----LRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGG---- 420 (673)
Q Consensus 349 lIFsq~~~~ld~l~~~L~----~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg---- 420 (673)
||.+.....+..+.+.+. ..++.+..+.|+.+..+.... .. .+..+++.++...-
T Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--------------~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 105 LVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE--------------RGCHLLVATPGRLVDMME 167 (417)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT--------------TCCSEEEECHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh--------------CCCCEEEEChHHHHHHHH
Confidence 999998876665555543 357888999999886544332 22 33457777764332
Q ss_pred -cccCCCCCCeeEe
Q 005858 421 -VGLNLVAADTVIF 433 (673)
Q Consensus 421 -~GiNL~~a~~VI~ 433 (673)
..+++...+.||+
T Consensus 168 ~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 168 RGKIGLDFCKYLVL 181 (417)
T ss_dssp TTSBCCTTCCEEEE
T ss_pred cCCcChhhCcEEEE
Confidence 1245555666554
No 349
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.87 E-value=1.2e+02 Score=25.21 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=46.9
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG 422 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G 422 (673)
..|..+..++.....+ ..+....+..+.++- ++...-...+...+.. .....+++++......-
T Consensus 26 ~~g~~v~~~~~~~~a~----~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~-----------~~~~pii~ls~~~~~~~ 89 (142)
T 2qxy_A 26 KDGFNVIWAKNEQEAF----TFLRREKIDLVFVDV-FEGEESLNLIRRIREE-----------FPDTKVAVLSAYVDKDL 89 (142)
T ss_dssp GGTCEEEEESSHHHHH----HHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHH-----------CTTCEEEEEESCCCHHH
T ss_pred hCCCEEEEECCHHHHH----HHHhccCCCEEEEeC-CCCCcHHHHHHHHHHH-----------CCCCCEEEEECCCCHHH
Confidence 3455555443322222 333445667777776 6554444555555422 23455666654432211
Q ss_pred c-CCC--CCCeeEeeCCCCCcchHHHHhHhhhccCCc
Q 005858 423 L-NLV--AADTVIFYEQDWNPQVDKQALQRAHRIGQM 456 (673)
Q Consensus 423 i-NL~--~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 456 (673)
+ ... +++. ++.-|.++..+.+++.++.+..+.
T Consensus 90 ~~~~~~~g~~~--~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 90 IINSVKAGAVD--YILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp HHHHHHHTCSC--EEESSCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHCCcce--eEeCCCCHHHHHHHHHHHHhhccc
Confidence 1 111 1222 334467788888888877765443
No 350
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=25.86 E-value=69 Score=33.67 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHhh
Q 005858 37 LKPHQVEGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 37 L~~~Q~~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
+.+.+...+..++ ...+.-.++.-++|+|||.+.-+++..+.
T Consensus 151 ~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 151 MTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4445555555552 12333457899999999999888877663
No 351
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=25.83 E-value=98 Score=30.30 Aligned_cols=43 Identities=9% Similarity=-0.092 Sum_probs=29.8
Q ss_pred HhcCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEECc
Q 005858 51 RYLLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCPL 95 (673)
Q Consensus 51 ~~~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P~ 95 (673)
.+..|.-.+|+-+.|+|||..+..++..+.... ..+++++...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 344566678999999999999888887665332 2256666543
No 352
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.65 E-value=64 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=24.6
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
..+|..++|+|||..+-++...+.. ...+++.|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~---~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHS---SGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC---CCCcEEEE
Confidence 5789999999999999888877642 22455544
No 353
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=25.41 E-value=3.6e+02 Score=24.01 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHH-HHHHHHH--hCCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLD-LLLKKLY--NSGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~-~ll~~~~--~~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
...+.|.+.+..++.. .+.......++||..... .++..+. ..+.++||.+........+.+.+.
T Consensus 25 ~~~~~Q~~~i~~~~~~------------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 92 (206)
T 1vec_A 25 KPSPIQEESIPIALSG------------RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICI 92 (206)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccC------------CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHH
Confidence 4677888887766532 111122345899986433 3333332 235589999998877666655554
Q ss_pred h----C-CCcEEEEeCCcCHHHH
Q 005858 367 L----R-KYSYERLDGSIRAEER 384 (673)
Q Consensus 367 ~----~-g~~~~~i~G~~~~~~R 384 (673)
. . ++.+..+.|+.+..+.
T Consensus 93 ~~~~~~~~~~~~~~~g~~~~~~~ 115 (206)
T 1vec_A 93 QVSKHMGGAKVMATTGGTNLRDD 115 (206)
T ss_dssp HHTTTSSSCCEEEECSSSCHHHH
T ss_pred HHHhhcCCceEEEEeCCccHHHH
Confidence 3 2 6788889998876443
No 354
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=25.37 E-value=31 Score=38.77 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=49.1
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHh------CCCeEEEEecCchHHHHH-
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYN------SGHRVLLFAQMTQTLDIL- 361 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~------~g~kvlIFsq~~~~ld~l- 361 (673)
.++.+.|.+.+..++.. .+.......++||.......+..+.. .+.++||.+.....+...
T Consensus 6 ~~l~~~Q~~~i~~il~g------------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~ 73 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEG------------KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLF 73 (699)
T ss_dssp -CCCHHHHHHHHHHHSS------------CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHH
T ss_pred CCccHHHHHHHHHHHhC------------CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHH
Confidence 34677888888776641 12223345689998765555444322 227899999988665555
Q ss_pred HHHHHhC---CCcEEEEeCCcCHHH
Q 005858 362 QDFLELR---KYSYERLDGSIRAEE 383 (673)
Q Consensus 362 ~~~L~~~---g~~~~~i~G~~~~~~ 383 (673)
.+.+... ++.+..++|+.+..+
T Consensus 74 ~~~l~~~~~~~~~v~~~~g~~~~~~ 98 (699)
T 4gl2_A 74 RKEFQPFLKKWYRVIGLSGDTQLKI 98 (699)
T ss_dssp HHTHHHHHTTTSCEEEEC----CCC
T ss_pred HHHHHHHcCcCceEEEEeCCcchhh
Confidence 5555443 389999999876543
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=25.26 E-value=40 Score=31.74 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=24.8
Q ss_pred HHHHHHH-HhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 44 GLSWLIR-RYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 44 gv~~l~~-~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
++.+++. -+..|.-.+|.-+.|+|||..+..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3444442 23344557889999999999998888753
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=25.19 E-value=31 Score=32.44 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=19.7
Q ss_pred CCCeEEECCCcchHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSY 78 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~ 78 (673)
+.+.++.-++|+|||-.++.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999999988743
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=24.78 E-value=62 Score=31.30 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 43 EGLSWLIRRYLLGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 43 ~gv~~l~~~~~~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+++-+.....+...+|.-.+|+|||..+-.+...+
T Consensus 36 ~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 36 KKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3443333333337789999999999999987777655
No 358
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=24.75 E-value=59 Score=27.59 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=31.7
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+.++||||..-.........|...|+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45779999999877778888888888996 778999875
No 359
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.64 E-value=77 Score=26.40 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=16.4
Q ss_pred CeEEEEecCchHHHHHHHHHHhCCCcEE
Q 005858 346 HRVLLFAQMTQTLDILQDFLELRKYSYE 373 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 373 (673)
.+++|..........+...|...|+.+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQ 34 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEE
Confidence 3566666666666666666665555433
No 360
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=24.54 E-value=51 Score=31.82 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=22.9
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVL 92 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV 92 (673)
+..---|.|||.+++.++..+. .+ .++|+|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g---~~Vlli 61 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KN---NKVLLI 61 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TT---SCEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CC---CCEEEE
Confidence 3455789999999999998886 32 556776
No 361
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=24.52 E-value=43 Score=34.75 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=23.4
Q ss_pred EEECCCcchHHHHHHHHHHHhhhcC---CCCCCEEEE
Q 005858 59 LLGDEMGLGKTLQAISFLSYLKFSQ---MSPGPFLVL 92 (673)
Q Consensus 59 iLade~GlGKTl~ai~~i~~l~~~~---~~~~~~LIV 92 (673)
+...--|.|||.+++.++..+...+ ...+++|+|
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3445789999999999998886421 123456666
No 362
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=24.50 E-value=65 Score=32.69 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=28.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE--CcccHHHH
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC--PLSVTDGW 101 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~--P~sll~~W 101 (673)
.+...--|.|||.++++++..+... .+++|+|- |..-+..|
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~~---g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAKV---RRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTS---SSCEEEEECCSSCHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhC---CCcEEEEECCCCCChhHH
Confidence 4566688999999999999888643 34567764 33444444
No 363
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=24.32 E-value=78 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.7
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
..+.++||||............|...|+.-..++|+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 56789999999887778888899999986677889865
No 364
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=24.03 E-value=2.2e+02 Score=22.72 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=35.0
Q ss_pred CCCeEEEEecCc-hHHHHHHHHHHhCCCcEEEEeCCcCHHHHHHHHHh
Q 005858 344 SGHRVLLFAQMT-QTLDILQDFLELRKYSYERLDGSIRAEERFAAIRH 390 (673)
Q Consensus 344 ~g~kvlIFsq~~-~~ld~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~ 390 (673)
...+|+||+... .....+..+|...|++|..++=....+.+..+.+.
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~ 61 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAAR 61 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHH
Confidence 356899998654 55788889999999999999887776655554443
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=23.96 E-value=51 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=26.1
Q ss_pred CeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
..+++...|+|||.++..++..+...+ +++++|..
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 456777899999999999998886543 34666643
No 366
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=23.85 E-value=38 Score=31.05 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=20.7
Q ss_pred CCCCeEEECCCcchHHHHHHHHHH
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLS 77 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~ 77 (673)
.+.+.++.-+.|+|||..++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356788999999999999998885
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.82 E-value=52 Score=30.70 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHh
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
+...+|.-.+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456788899999999998887765
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.69 E-value=51 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.2
Q ss_pred CCeEEECCCcchHHHHHHHHHHHhh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYLK 80 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l~ 80 (673)
...+|.-.+|+|||.++-.+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999888777663
No 369
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=23.43 E-value=52 Score=33.83 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| -.+|+|||.++..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 4444455554 4555 4899999999863
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=23.20 E-value=53 Score=31.01 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.5
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
...+|.-.+|+|||.++-.+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888899999999998888776
No 371
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.05 E-value=94 Score=26.68 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=12.1
Q ss_pred eCCCCCcchHHHHhHhhhc
Q 005858 434 YEQDWNPQVDKQALQRAHR 452 (673)
Q Consensus 434 ~D~~wnp~~~~Qa~gR~~R 452 (673)
+--|+++..+.+++.|+.|
T Consensus 114 l~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 114 IVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EESSCCHHHHHHHHHHHCC
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 3456777777777766543
No 372
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=23.01 E-value=69 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
.++.-..|.|||.++++++..+...+ +++|+|-
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G---~rVLlvd 43 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG---KRVLLVS 43 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC---CcEEEEE
Confidence 56667789999999999998887543 4577774
No 373
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=22.66 E-value=96 Score=29.23 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=48.5
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh---CCCeEEEEecCchHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN---SGHRVLLFAQMTQTLDILQDFL 365 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~---~g~kvlIFsq~~~~ld~l~~~L 365 (673)
..++.|.+.+..++.. .+.......++||..+ +.-++..+.. .+.++||.+.....+..+.+.+
T Consensus 51 ~~~~~Q~~~i~~~~~~------------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 118 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHG------------RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHREL 118 (245)
T ss_dssp SCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHH
Confidence 3577888887765542 1112223458999865 4455555543 4568999999887776666655
Q ss_pred Hh----CCCcEEEEeCCc
Q 005858 366 EL----RKYSYERLDGSI 379 (673)
Q Consensus 366 ~~----~g~~~~~i~G~~ 379 (673)
.. .++.+..+.|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~ 136 (245)
T 3dkp_A 119 IKISEGTGFRIHMIHKAA 136 (245)
T ss_dssp HHHTTTSCCCEECCCHHH
T ss_pred HHHhcccCceEEEEecCc
Confidence 44 366666666553
No 374
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=22.56 E-value=53 Score=33.58 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=16.6
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQA 72 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~a 72 (673)
|+.....|.+ +|+| -.+|+|||.++
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3444444554 4555 58999999998
No 375
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.43 E-value=1.7e+02 Score=34.25 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=49.6
Q ss_pred cccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhC-----CCeEEEEecCchHHHHHH
Q 005858 288 LTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNS-----GHRVLLFAQMTQTLDILQ 362 (673)
Q Consensus 288 ~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~-----g~kvlIFsq~~~~ld~l~ 362 (673)
...+++.|.+.+..++.. .+.......++||.......+...... +.++||.+.....+..+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g------------~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING------------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp --CCCHHHHHHHHHHHTT------------CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------------CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHH
Confidence 344667888877765431 112223455899987655555443333 778999999876554444
Q ss_pred ----HHHHhCCCcEEEEeCCcCHHH
Q 005858 363 ----DFLELRKYSYERLDGSIRAEE 383 (673)
Q Consensus 363 ----~~L~~~g~~~~~i~G~~~~~~ 383 (673)
.++...++.+..++|+.+...
T Consensus 314 ~~~~~~~~~~~~~v~~~~G~~~~~~ 338 (936)
T 4a2w_A 314 NVFKHHFERQGYSVQGISGENFSNV 338 (936)
T ss_dssp HHHHHHHHTTTCCEEEECCC-----
T ss_pred HHHHHHhcccCceEEEEECCcchhh
Confidence 444445899999999986544
No 376
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=22.40 E-value=52 Score=33.87 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.4
Q ss_pred CCCCe-E-EECCCcchHHHHHHH
Q 005858 54 LGVNV-L-LGDEMGLGKTLQAIS 74 (673)
Q Consensus 54 ~~~~~-i-Lade~GlGKTl~ai~ 74 (673)
.|.+| | -...+|+|||.++.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHHB
T ss_pred CCceeEEEeeCCCCCCCCEEEec
Confidence 35554 4 456899999999975
No 377
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=22.32 E-value=64 Score=34.20 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| -.+|+|||.++.+
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence 3444445554 4555 4899999999864
No 378
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=22.10 E-value=58 Score=32.96 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=18.0
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
++.....|.+ +|+| -.+|+|||.++..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 4444445554 4544 5899999999864
No 379
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=22.02 E-value=1.4e+02 Score=27.55 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHh--CCCeEEEEecCchHHHHHHHHHH
Q 005858 290 EITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYN--SGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 290 e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~--~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
..++.|.+.+..++.. .+.......++||... +..++..+.. .+.++||.+........+.+.+.
T Consensus 26 ~~~~~Q~~~i~~~~~~------------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 93 (219)
T 1q0u_A 26 KPTEIQERIIPGALRG------------ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETL 93 (219)
T ss_dssp SCCHHHHHHHHHHHHT------------CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHH
Confidence 3567888887766532 1111223457888875 3334444332 35689999988776655555443
Q ss_pred h----C----CCcEEEEeCCcCH
Q 005858 367 L----R----KYSYERLDGSIRA 381 (673)
Q Consensus 367 ~----~----g~~~~~i~G~~~~ 381 (673)
. . ++.+..+.|+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~ 116 (219)
T 1q0u_A 94 KITKFCPKDRMIVARCLIGGTDK 116 (219)
T ss_dssp HHHTTSCGGGCCCEEEECCCSHH
T ss_pred HHhhhcccccceEEEEEeCCCCH
Confidence 2 2 6778888888654
No 380
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.97 E-value=59 Score=28.56 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=18.1
Q ss_pred eEEECCCcchHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l 79 (673)
.+|.-.+|+|||.++-.+...+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999888777655
No 381
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=21.95 E-value=69 Score=28.26 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCeEEEEecCc---------hHHHHHHHHHHhCCCcEEEEeCCcC
Q 005858 345 GHRVLLFAQMT---------QTLDILQDFLELRKYSYERLDGSIR 380 (673)
Q Consensus 345 g~kvlIFsq~~---------~~ld~l~~~L~~~g~~~~~i~G~~~ 380 (673)
+..|||||... .....+...|...|+++..+.|+..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 67999999887 4577888889999999999999854
No 382
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=21.81 E-value=70 Score=32.80 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=18.3
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
++.....|.+ +|+| -.+|+|||.++..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHTB
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEec
Confidence 4455555655 4544 5999999999863
No 383
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=21.80 E-value=1.4e+02 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=10.9
Q ss_pred eCCCCCcchHHHHhHhhh
Q 005858 434 YEQDWNPQVDKQALQRAH 451 (673)
Q Consensus 434 ~D~~wnp~~~~Qa~gR~~ 451 (673)
+.-|+++....+++.++.
T Consensus 102 l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 102 IVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHHHh
Confidence 344667777666666553
No 384
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.76 E-value=1.8e+02 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=9.1
Q ss_pred CCCCCcchHHHHhHhhhc
Q 005858 435 EQDWNPQVDKQALQRAHR 452 (673)
Q Consensus 435 D~~wnp~~~~Qa~gR~~R 452 (673)
.-|+++....+++.++.+
T Consensus 103 ~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 103 EKPFEDTVIIEAIERASE 120 (126)
T ss_dssp ESSCCHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 334555555555555443
No 385
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.75 E-value=70 Score=32.71 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=25.4
Q ss_pred eEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEEC
Q 005858 58 VLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLCP 94 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~P 94 (673)
.+..---|.|||.++++++..+.... ..+++|+|-.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~ 56 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLIST 56 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEEC
Confidence 45566889999999999998886201 2345777744
No 386
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=21.72 E-value=2.2e+02 Score=33.44 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=56.1
Q ss_pred CcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCC--eEEEEecCchHHHHHHHH
Q 005858 287 PLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGH--RVLLFAQMTQTLDILQDF 364 (673)
Q Consensus 287 ~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~--kvlIFsq~~~~ld~l~~~ 364 (673)
...++.+.|......++... .....-....++||......++..+...|. ++||.|...-......++
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~----------~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~ 219 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH----------APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEM 219 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS----------SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhc----------CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHH
Confidence 34667889988777655432 011111135689999888888877776665 999999984444555555
Q ss_pred HHhCCCcEEEEeCCcC
Q 005858 365 LELRKYSYERLDGSIR 380 (673)
Q Consensus 365 L~~~g~~~~~i~G~~~ 380 (673)
....++++..++|+..
T Consensus 220 ~~~f~l~v~v~~~~~~ 235 (968)
T 3dmq_A 220 LRRFNLRFALFDDERY 235 (968)
T ss_dssp HHHSCCCCEECCHHHH
T ss_pred HHHhCCCEEEEccchh
Confidence 5667888888877643
No 387
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=21.70 E-value=98 Score=31.75 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.6
Q ss_pred eEEECCCcchHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l 79 (673)
.+|.-.+|+|||..+-+++..+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7889999999999887777655
No 388
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=21.64 E-value=60 Score=33.35 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=18.0
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| -.+|+|||.++.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEec
Confidence 4444445554 4444 4899999999864
No 389
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.56 E-value=59 Score=28.66 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=19.9
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+|.-.+|+|||.++-.+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 467888899999999998777665
No 390
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.28 E-value=1.5e+02 Score=24.15 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEE
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYE 373 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 373 (673)
+.+++|..........+...|...|+.+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 35 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTV 35 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEE
Confidence 34666666666666666666666665543
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.28 E-value=58 Score=31.41 Aligned_cols=22 Identities=27% Similarity=0.087 Sum_probs=18.8
Q ss_pred eEEECCCcchHHHHHHHHHHHh
Q 005858 58 VLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 58 ~iLade~GlGKTl~ai~~i~~l 79 (673)
.+|.-.+|+|||..+..++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 4788899999999998887765
No 392
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=21.28 E-value=1.2e+02 Score=25.79 Aligned_cols=38 Identities=3% Similarity=0.229 Sum_probs=31.0
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+..+||||+.-.........|...|+. +..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 45679999999877777788888889995 778888874
No 393
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=21.21 E-value=67 Score=33.18 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=17.4
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| -.+|+|||.++..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHhCCceEEEEeecCCCCCcceeccc
Confidence 3444444544 4544 5899999999864
No 394
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=21.20 E-value=4.9e+02 Score=28.02 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=51.6
Q ss_pred ccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHH-HHHHHHHHHhC------CCeEEEEecCchHHHHH
Q 005858 289 TEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVV-LDLLLKKLYNS------GHRVLLFAQMTQTLDIL 361 (673)
Q Consensus 289 ~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~-l~~ll~~~~~~------g~kvlIFsq~~~~ld~l 361 (673)
..+++.|.+.+..++.. ...+.......++||..+ +.-++..+... +.++||.+.....+..+
T Consensus 42 ~~~~~~Q~~~i~~il~~----------~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSS----------EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp SSCCHHHHHHHHHHHCS----------SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcc----------CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHH
Confidence 34678898888766521 111112223468999874 33344444332 34899999988776665
Q ss_pred HHHHHh--------CCCcEEEEeCCcCHHHHH
Q 005858 362 QDFLEL--------RKYSYERLDGSIRAEERF 385 (673)
Q Consensus 362 ~~~L~~--------~g~~~~~i~G~~~~~~R~ 385 (673)
.+.+.. ..+.+..+.|+.......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 143 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM 143 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH
T ss_pred HHHHHHHHhhcccccceEEEEEECCccHHHHH
Confidence 555543 346677888887654433
No 395
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=1.6e+02 Score=24.05 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=35.8
Q ss_pred CeEEEEecCch-HHH------HHHHHHHhCCCcEEEEeCCcCHHHHHHHHHhh
Q 005858 346 HRVLLFAQMTQ-TLD------ILQDFLELRKYSYERLDGSIRAEERFAAIRHF 391 (673)
Q Consensus 346 ~kvlIFsq~~~-~ld------~l~~~L~~~g~~~~~i~G~~~~~~R~~~i~~F 391 (673)
.+|+||+.... ... .+..+|...|++|..++=....+.+..+.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 47889885443 345 68889999999999999888877777777665
No 396
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=21.05 E-value=62 Score=33.22 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=18.7
Q ss_pred HHHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 47 WLIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 47 ~l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
-++.....|.+ +|+| ..+|+|||.++.+
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 34555555655 4444 5899999999863
No 397
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=21.04 E-value=57 Score=28.96 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=19.3
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.-.+|.-.+|+|||..+=.+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 346788899999999888777655
No 398
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=20.98 E-value=1.2e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=19.1
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEE
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYE 373 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 373 (673)
+.+++|..........+...|...|+.+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~ 31 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVS 31 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEE
Confidence 34677777777777777777776666544
No 399
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.92 E-value=72 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
.+..+||||..-.........|...|+. +..++|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999887788888899999996 778889865
No 400
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=20.90 E-value=49 Score=29.82 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.0
Q ss_pred CeEEECCCcchHHHHHHHHHHHh
Q 005858 57 NVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 57 ~~iLade~GlGKTl~ai~~i~~l 79 (673)
..+|.-.+|+|||.++-.+...+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 46788899999999988777655
No 401
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=20.88 E-value=73 Score=27.59 Aligned_cols=38 Identities=8% Similarity=0.248 Sum_probs=31.3
Q ss_pred hCCCeEEEEecCchHHHHHHHHHHhCCCc-EEEEeCCcC
Q 005858 343 NSGHRVLLFAQMTQTLDILQDFLELRKYS-YERLDGSIR 380 (673)
Q Consensus 343 ~~g~kvlIFsq~~~~ld~l~~~L~~~g~~-~~~i~G~~~ 380 (673)
..+..+||||..-.........|...|+. +..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45678999999877778888899999996 778888865
No 402
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=20.80 E-value=1.1e+02 Score=33.08 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCCeEEECCCcchHHHHHHHHHHHhhhcCCCCC-CEEEEECcc
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPG-PFLVLCPLS 96 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~-~~LIV~P~s 96 (673)
+...+++-.+|+|||...-+++..+........ .++++=|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 457899999999999988888776643332222 244444553
No 403
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.70 E-value=48 Score=29.79 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCeEEECCCcchHHHHHHHHHHHh
Q 005858 56 VNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 56 ~~~iLade~GlGKTl~ai~~i~~l 79 (673)
...+|.-.+|+|||.++-.+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346788899999999988777655
No 404
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=20.69 E-value=64 Score=33.25 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
++.....|.+ +|+| ..+|+|||.++.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEEec
Confidence 4444445554 4444 5899999999854
No 405
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.56 E-value=33 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCCCeEEECCCcchHHHHHHHHHHHh
Q 005858 54 LGVNVLLGDEMGLGKTLQAISFLSYL 79 (673)
Q Consensus 54 ~~~~~iLade~GlGKTl~ai~~i~~l 79 (673)
.+.+.+|.-+.|+|||..+-+++..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35578999999999999887776543
No 406
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.54 E-value=1.4e+02 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=19.3
Q ss_pred CCeEEEEecCchHHHHHHHHHHhCCCcEE
Q 005858 345 GHRVLLFAQMTQTLDILQDFLELRKYSYE 373 (673)
Q Consensus 345 g~kvlIFsq~~~~ld~l~~~L~~~g~~~~ 373 (673)
+.+|+|..........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNII 35 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 44677777766677777777776666544
No 407
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.45 E-value=3.1e+02 Score=22.65 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=51.6
Q ss_pred CeEEEEecCchHHHHHHHHHHh-CCCcEEEEeCCcCHHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEeccccccc-c
Q 005858 346 HRVLLFAQMTQTLDILQDFLEL-RKYSYERLDGSIRAEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGVG-L 423 (673)
Q Consensus 346 ~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~i~G~~~~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~G-i 423 (673)
..++.++.....+.. .+.. ..+..+.++-.++...-..+++.++.. .....+++++...-... .
T Consensus 46 ~~v~~~~~~~~~~~~---~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~-----------~~~~~ii~lt~~~~~~~~~ 111 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQ---RTDGLDAFDILMIDGAALDTAELAAIEKLSRL-----------HPGLTCLLVTTDASSQTLL 111 (146)
T ss_dssp CEEEEECCCHHHHTT---CHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH-----------CTTCEEEEEESCCCHHHHH
T ss_pred eEEEEeCCHHHHHHH---HHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh-----------CCCCcEEEEeCCCCHHHHH
Confidence 566655544333332 2333 567777777777665555566555532 24556666665432211 1
Q ss_pred CCCCCCeeEeeCCCCCcchHHHHhHhhhccC
Q 005858 424 NLVAADTVIFYEQDWNPQVDKQALQRAHRIG 454 (673)
Q Consensus 424 NL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 454 (673)
....+...-++.-|.++..+.+++.++.+..
T Consensus 112 ~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 112 DAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp HHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 1122333334555788888888888876644
No 408
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.45 E-value=3.2e+02 Score=22.32 Aligned_cols=99 Identities=6% Similarity=0.035 Sum_probs=53.5
Q ss_pred CCCeEEEEecCchHHHHHHHHHHh-CCCcEEEEeCCcC-HHHHHHHHHhhccchhHhhhhhhcCCCCcEEEEEecccccc
Q 005858 344 SGHRVLLFAQMTQTLDILQDFLEL-RKYSYERLDGSIR-AEERFAAIRHFSVQSAIERLYSEAGGNDAFVFMISTRAGGV 421 (673)
Q Consensus 344 ~g~kvlIFsq~~~~ld~l~~~L~~-~g~~~~~i~G~~~-~~~R~~~i~~F~~~~~~~~~~~~~~~~~~~vlL~st~agg~ 421 (673)
.|..++.++.....+ +.+.. ..+..+.+|-.++ ...-..+++..+..+. .....+++++...-..
T Consensus 28 ~~~~v~~~~~~~~a~----~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~---------~~~~~ii~ls~~~~~~ 94 (140)
T 3lua_A 28 GEYDFIEVENLKKFY----SIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSR---------TANTPVIIATKSDNPG 94 (140)
T ss_dssp CCCEEEEECSHHHHH----TTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGG---------GTTCCEEEEESCCCHH
T ss_pred cCccEEEECCHHHHH----HHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcc---------cCCCCEEEEeCCCCHH
Confidence 466666554433322 23344 5677888887777 6666666666654110 2455676766543211
Q ss_pred c-cCCCCCCeeEeeCCCCCcchHHHHhHhhhccCC
Q 005858 422 G-LNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQ 455 (673)
Q Consensus 422 G-iNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ 455 (673)
- .....+...-++.-|.++..+.+++.++.+-+.
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 95 YRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp HHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 1 111112222344557888888888888876543
No 409
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=20.36 E-value=3e+02 Score=25.83 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=55.0
Q ss_pred CcccccHHHHHHHHHHHhhhHHHHHhhccccccccccccccCCcHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHH
Q 005858 287 PLTEITVLQKKVYASILRKELPKLLALSSRTANHQSLQNTASGKLVVLDLLLKKLYNSGHRVLLFAQMTQTLDILQDFLE 366 (673)
Q Consensus 287 ~~~e~~~~Q~~~y~~~l~~~~~~l~~~~~~~~~~~~l~~~~s~Kl~~l~~ll~~~~~~g~kvlIFsq~~~~ld~l~~~L~ 366 (673)
...++.+.|.+.+..++... +........+||..+...++..+ +.+++|++.....+..+.+.+.
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~------------~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~ 154 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDK------------RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLG 154 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTS------------EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHG
T ss_pred CCCCcCHHHHHHHHHHHhCC------------CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 34567889998877655321 11222345899988776666543 7799999998887777777777
Q ss_pred hCCCc-EEEEeCCcC
Q 005858 367 LRKYS-YERLDGSIR 380 (673)
Q Consensus 367 ~~g~~-~~~i~G~~~ 380 (673)
..++. +..+.|...
T Consensus 155 ~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 155 IFGEEYVGEFSGRIK 169 (237)
T ss_dssp GGCGGGEEEESSSCB
T ss_pred hCCCCeEEEEeCCCC
Confidence 66777 888888753
No 410
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=20.35 E-value=50 Score=34.61 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| ..+|+|||.++.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 4444445554 4544 4899999999875
No 411
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=20.17 E-value=67 Score=32.79 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=17.8
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAI 73 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai 73 (673)
++.....|.+ +|+| -.+|+|||.++.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeec
Confidence 4555555655 4544 589999999984
No 412
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=20.12 E-value=67 Score=32.99 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=18.0
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
++.....|.+ +|+| -.+|+|||.++..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEecc
Confidence 3444445554 4555 5899999999853
No 413
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=20.11 E-value=66 Score=29.03 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.4
Q ss_pred CCCeEEECCCcchHHHHHHHHHHH
Q 005858 55 GVNVLLGDEMGLGKTLQAISFLSY 78 (673)
Q Consensus 55 ~~~~iLade~GlGKTl~ai~~i~~ 78 (673)
+...+|.-.+|+|||..+-.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999988777665
No 414
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=20.09 E-value=67 Score=33.18 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=18.1
Q ss_pred HHHHhcCCCC-eEEE-CCCcchHHHHHHH
Q 005858 48 LIRRYLLGVN-VLLG-DEMGLGKTLQAIS 74 (673)
Q Consensus 48 l~~~~~~~~~-~iLa-de~GlGKTl~ai~ 74 (673)
|+.....|.+ +|+| -.+|+|||.++.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 4444455554 4544 4899999999864
No 415
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=20.00 E-value=1.6e+02 Score=30.39 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=25.1
Q ss_pred cCCCCeEEECCCcchHHHHHHHHHHHhhhcCCCCCCEEEEE
Q 005858 53 LLGVNVLLGDEMGLGKTLQAISFLSYLKFSQMSPGPFLVLC 93 (673)
Q Consensus 53 ~~~~~~iLade~GlGKTl~ai~~i~~l~~~~~~~~~~LIV~ 93 (673)
......++..++|+|||..+-++... .....+|++.|-
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~---s~r~~~~fv~v~ 195 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKL---SDRSKEPFVALN 195 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHH---STTTTSCEEEEE
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHh---cCCCCCCeEEEe
Confidence 34567899999999999866444332 223456776664
Done!