Query 005860
Match_columns 673
No_of_seqs 387 out of 3852
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 14:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-77 5.1E-82 675.5 38.8 618 3-657 2-679 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-48 2.6E-53 466.1 30.0 481 126-651 133-712 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-38 7.9E-43 323.2 8.7 238 174-418 1-285 (287)
4 KOG0617 Ras suppressor protein 99.4 1.1E-14 2.4E-19 128.0 -3.2 139 492-643 56-196 (264)
5 KOG0617 Ras suppressor protein 99.3 4.9E-14 1.1E-18 123.9 -4.5 145 493-650 34-180 (264)
6 PRK04841 transcriptional regul 99.2 6.2E-10 1.3E-14 132.8 19.7 268 168-468 13-332 (903)
7 PLN00113 leucine-rich repeat r 99.1 6.3E-11 1.4E-15 142.2 6.2 149 491-650 139-291 (968)
8 KOG0444 Cytoskeletal regulator 99.1 7.1E-12 1.5E-16 130.7 -2.4 132 491-633 54-186 (1255)
9 PLN00113 leucine-rich repeat r 99.1 8.4E-11 1.8E-15 141.1 5.6 171 491-672 163-339 (968)
10 KOG0472 Leucine-rich repeat pr 99.0 2.9E-11 6.4E-16 120.2 -0.8 146 494-651 390-536 (565)
11 KOG0444 Cytoskeletal regulator 99.0 2.2E-11 4.8E-16 127.1 -1.8 146 497-650 155-323 (1255)
12 TIGR03015 pepcterm_ATPase puta 98.9 3.7E-08 8E-13 99.8 16.1 137 197-338 43-197 (269)
13 KOG0472 Leucine-rich repeat pr 98.9 1.7E-10 3.6E-15 115.0 -2.0 134 491-639 182-316 (565)
14 PRK00411 cdc6 cell division co 98.9 2.1E-08 4.5E-13 107.7 13.6 169 167-339 28-213 (394)
15 PLN03210 Resistant to P. syrin 98.8 3.3E-09 7.1E-14 128.2 6.6 122 491-627 588-711 (1153)
16 PF05729 NACHT: NACHT domain 98.8 1.1E-08 2.4E-13 95.3 8.6 134 198-337 1-154 (166)
17 KOG0532 Leucine-rich repeat (L 98.8 6.5E-10 1.4E-14 115.6 -2.1 130 505-649 111-240 (722)
18 TIGR02928 orc1/cdc6 family rep 98.8 9E-08 2E-12 101.6 13.9 118 167-287 13-140 (365)
19 PF01637 Arch_ATPase: Archaeal 98.7 1E-08 2.3E-13 101.3 5.4 43 171-220 1-43 (234)
20 COG2909 MalT ATP-dependent tra 98.7 1E-06 2.2E-11 97.0 19.4 279 168-469 18-339 (894)
21 PF13401 AAA_22: AAA domain; P 98.6 5.8E-08 1.3E-12 86.6 6.7 117 197-315 4-125 (131)
22 PF14580 LRR_9: Leucine-rich r 98.6 2.3E-08 5.1E-13 92.4 2.9 131 513-657 17-154 (175)
23 PTZ00202 tuzin; Provisional 98.5 1.2E-06 2.7E-11 90.1 13.7 110 162-283 255-368 (550)
24 KOG4658 Apoptotic ATPase [Sign 98.5 2.6E-08 5.6E-13 114.7 1.7 103 544-654 546-653 (889)
25 PF13173 AAA_14: AAA domain 98.5 3.3E-07 7.1E-12 81.2 8.4 119 198-338 3-127 (128)
26 cd00009 AAA The AAA+ (ATPases 98.5 6E-07 1.3E-11 81.4 10.5 125 172-317 1-131 (151)
27 cd01128 rho_factor Transcripti 98.5 1.5E-07 3.2E-12 92.7 6.6 88 197-285 16-112 (249)
28 KOG4194 Membrane glycoprotein 98.5 1.8E-08 4E-13 105.2 0.1 147 492-649 269-422 (873)
29 KOG0618 Serine/threonine phosp 98.5 1.3E-08 2.8E-13 111.8 -1.2 149 491-648 240-457 (1081)
30 KOG4194 Membrane glycoprotein 98.5 7.6E-08 1.6E-12 100.7 3.3 145 492-648 102-250 (873)
31 PF13191 AAA_16: AAA ATPase do 98.4 3.3E-07 7.2E-12 87.0 6.4 48 170-221 1-48 (185)
32 PRK00080 ruvB Holliday junctio 98.4 1.8E-06 3.8E-11 89.9 12.1 156 168-339 24-186 (328)
33 KOG0532 Leucine-rich repeat (L 98.4 2.3E-08 5E-13 104.3 -2.3 141 499-654 128-268 (722)
34 PRK09376 rho transcription ter 98.4 4.7E-07 1E-11 92.8 6.7 88 197-285 169-265 (416)
35 COG2256 MGS1 ATPase related to 98.4 8.1E-07 1.8E-11 89.8 8.3 133 169-338 30-168 (436)
36 PRK15370 E3 ubiquitin-protein 98.4 2.2E-07 4.7E-12 105.5 4.4 122 492-636 199-320 (754)
37 PRK06893 DNA replication initi 98.4 1.4E-06 3E-11 85.6 8.7 116 197-339 39-167 (229)
38 TIGR00635 ruvB Holliday juncti 98.4 6.8E-06 1.5E-10 84.9 14.4 155 169-339 4-165 (305)
39 PF14580 LRR_9: Leucine-rich r 98.3 4.6E-07 9.9E-12 83.8 4.2 106 540-656 16-123 (175)
40 COG4886 Leucine-rich repeat (L 98.3 4.6E-07 9.9E-12 97.3 4.6 143 494-649 118-261 (394)
41 KOG1259 Nischarin, modulator o 98.3 5.9E-08 1.3E-12 93.5 -2.4 131 491-636 283-415 (490)
42 PRK13342 recombination factor 98.3 1.9E-06 4.1E-11 92.5 8.0 137 169-339 12-157 (413)
43 PLN03150 hypothetical protein; 98.2 1.3E-06 2.9E-11 98.5 6.8 90 545-641 420-512 (623)
44 COG1474 CDC6 Cdc6-related prot 98.2 9.8E-06 2.1E-10 84.5 12.3 116 168-286 16-133 (366)
45 PF13855 LRR_8: Leucine rich r 98.2 9.4E-07 2E-11 66.9 3.5 57 574-631 2-60 (61)
46 KOG0618 Serine/threonine phosp 98.2 1.7E-07 3.6E-12 103.4 -1.3 94 545-646 47-140 (1081)
47 PRK15370 E3 ubiquitin-protein 98.2 6.6E-07 1.4E-11 101.7 3.3 126 492-640 262-387 (754)
48 TIGR00767 rho transcription te 98.2 2.4E-06 5.3E-11 88.1 6.8 88 197-285 168-264 (415)
49 PTZ00112 origin recognition co 98.2 8.7E-06 1.9E-10 90.5 11.3 118 167-286 753-879 (1164)
50 KOG2028 ATPase related to the 98.2 6.9E-06 1.5E-10 81.6 9.1 121 195-337 160-285 (554)
51 KOG1259 Nischarin, modulator o 98.2 3.8E-07 8.1E-12 88.0 0.2 123 514-651 283-407 (490)
52 PRK15387 E3 ubiquitin-protein 98.2 1.3E-06 2.8E-11 98.8 4.5 79 560-648 372-450 (788)
53 TIGR03420 DnaA_homol_Hda DnaA 98.2 1E-05 2.3E-10 79.5 10.0 130 174-337 22-163 (226)
54 TIGR02903 spore_lon_C ATP-depe 98.1 1.5E-05 3.2E-10 89.4 11.4 162 169-337 154-357 (615)
55 PRK15387 E3 ubiquitin-protein 98.1 4.4E-06 9.6E-11 94.6 7.3 79 491-590 241-319 (788)
56 PRK05564 DNA polymerase III su 98.1 2.5E-05 5.4E-10 80.7 11.8 147 169-338 4-157 (313)
57 PRK14963 DNA polymerase III su 98.1 2.6E-06 5.6E-11 92.7 4.5 164 169-339 14-181 (504)
58 PRK12402 replication factor C 98.1 1.6E-05 3.6E-10 83.3 10.0 45 169-220 15-59 (337)
59 COG4886 Leucine-rich repeat (L 98.1 2.1E-06 4.5E-11 92.2 3.1 144 493-650 141-284 (394)
60 cd00116 LRR_RI Leucine-rich re 98.0 3.2E-06 7E-11 87.9 3.8 136 491-634 80-235 (319)
61 PRK13341 recombination factor 98.0 1.1E-05 2.3E-10 91.4 8.1 137 169-339 28-174 (725)
62 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 57.2 3.7 39 574-613 2-40 (44)
63 PF13855 LRR_8: Leucine rich r 98.0 5.8E-06 1.3E-10 62.5 3.9 58 543-607 1-60 (61)
64 KOG2543 Origin recognition com 98.0 3.7E-05 8.1E-10 77.3 10.5 109 168-285 5-124 (438)
65 PLN03150 hypothetical protein; 98.0 5.3E-06 1.2E-10 93.7 4.6 104 517-631 420-526 (623)
66 PRK14961 DNA polymerase III su 98.0 6E-05 1.3E-09 79.4 12.2 155 169-337 16-182 (363)
67 cd00116 LRR_RI Leucine-rich re 97.9 8.3E-06 1.8E-10 84.8 4.6 154 492-656 108-288 (319)
68 PRK07003 DNA polymerase III su 97.9 6E-05 1.3E-09 83.6 11.3 157 169-338 16-183 (830)
69 PRK14949 DNA polymerase III su 97.9 6.6E-05 1.4E-09 84.9 11.5 147 169-339 16-184 (944)
70 PRK14957 DNA polymerase III su 97.9 6.1E-05 1.3E-09 82.3 11.0 146 169-338 16-183 (546)
71 PLN03025 replication factor C 97.9 6.2E-05 1.3E-09 78.0 10.4 147 169-337 13-162 (319)
72 PRK14960 DNA polymerase III su 97.9 6.7E-05 1.4E-09 82.3 10.8 157 169-338 15-182 (702)
73 PRK11331 5-methylcytosine-spec 97.9 4.6E-05 9.9E-10 80.2 9.0 108 169-289 175-285 (459)
74 PRK00440 rfc replication facto 97.9 9.2E-05 2E-09 77.0 11.3 145 169-337 17-165 (319)
75 PRK08727 hypothetical protein; 97.8 0.0001 2.2E-09 72.6 9.6 36 198-235 42-77 (233)
76 PRK06645 DNA polymerase III su 97.8 0.00016 3.4E-09 78.7 11.9 161 169-339 21-193 (507)
77 PRK14962 DNA polymerase III su 97.8 0.00013 2.9E-09 78.8 11.3 146 169-338 14-181 (472)
78 COG3899 Predicted ATPase [Gene 97.8 6.2E-05 1.3E-09 87.4 9.2 289 170-466 1-384 (849)
79 KOG2227 Pre-initiation complex 97.8 0.00016 3.4E-09 74.8 10.7 117 166-285 147-265 (529)
80 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.7E-10 54.1 3.4 40 596-636 1-40 (44)
81 PRK12323 DNA polymerase III su 97.8 0.00013 2.9E-09 79.8 10.4 162 169-338 16-188 (700)
82 KOG4237 Extracellular matrix p 97.7 1.9E-06 4.2E-11 86.5 -3.5 120 518-649 70-194 (498)
83 PHA02544 44 clamp loader, smal 97.7 0.00017 3.6E-09 74.9 10.5 121 168-316 20-141 (316)
84 PRK07940 DNA polymerase III su 97.7 0.00034 7.4E-09 73.9 12.4 149 169-338 5-181 (394)
85 PF00308 Bac_DnaA: Bacterial d 97.7 0.00032 6.8E-09 68.3 11.2 123 197-337 34-170 (219)
86 PRK14951 DNA polymerase III su 97.7 0.00023 5E-09 79.0 11.4 160 169-338 16-188 (618)
87 PRK04195 replication factor C 97.7 0.00014 3E-09 79.9 9.6 146 169-339 14-166 (482)
88 PRK09087 hypothetical protein; 97.7 9.7E-05 2.1E-09 72.1 7.5 104 197-337 44-157 (226)
89 PRK08116 hypothetical protein; 97.7 0.00011 2.4E-09 73.7 8.1 103 198-315 115-220 (268)
90 PRK07994 DNA polymerase III su 97.7 0.00019 4.2E-09 79.7 10.6 158 169-339 16-184 (647)
91 PRK14956 DNA polymerase III su 97.7 0.00012 2.6E-09 78.1 8.5 159 169-337 18-184 (484)
92 PRK14958 DNA polymerase III su 97.7 0.00022 4.8E-09 78.0 10.8 146 169-337 16-182 (509)
93 KOG3207 Beta-tubulin folding c 97.7 1.7E-05 3.7E-10 80.9 1.9 133 492-634 121-285 (505)
94 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.9E-10 89.2 2.3 130 492-633 122-263 (699)
95 PF05621 TniB: Bacterial TniB 97.7 0.00029 6.2E-09 70.2 10.4 115 169-287 34-156 (302)
96 PRK14955 DNA polymerase III su 97.7 0.00018 3.9E-09 76.8 9.7 162 169-337 16-190 (397)
97 KOG3665 ZYG-1-like serine/thre 97.6 2.2E-05 4.8E-10 88.6 2.5 108 514-632 121-232 (699)
98 TIGR01242 26Sp45 26S proteasom 97.6 0.00021 4.6E-09 75.5 9.6 53 168-220 121-179 (364)
99 PRK08691 DNA polymerase III su 97.6 0.00028 6E-09 78.3 10.6 143 169-338 16-183 (709)
100 PRK08084 DNA replication initi 97.6 0.0003 6.5E-09 69.3 9.6 114 197-337 45-171 (235)
101 PF00004 AAA: ATPase family as 97.6 0.00016 3.5E-09 64.1 7.1 21 200-220 1-21 (132)
102 smart00382 AAA ATPases associa 97.6 0.00027 5.8E-09 63.2 8.7 87 198-288 3-90 (148)
103 PRK05896 DNA polymerase III su 97.6 0.00035 7.6E-09 76.6 10.8 157 169-338 16-183 (605)
104 PRK07471 DNA polymerase III su 97.6 0.0008 1.7E-08 70.5 13.1 161 169-339 19-206 (365)
105 PRK14964 DNA polymerase III su 97.6 0.00042 9.1E-09 74.8 11.0 146 169-337 13-179 (491)
106 PF05496 RuvB_N: Holliday junc 97.6 0.00015 3.3E-09 68.8 6.5 51 168-220 23-73 (233)
107 PRK08903 DnaA regulatory inact 97.6 0.00034 7.5E-09 68.7 9.4 110 197-337 42-161 (227)
108 TIGR02397 dnaX_nterm DNA polym 97.6 0.00075 1.6E-08 71.3 12.4 145 169-337 14-180 (355)
109 PRK15386 type III secretion pr 97.5 8.8E-05 1.9E-09 77.2 5.1 113 493-630 53-187 (426)
110 PRK09112 DNA polymerase III su 97.5 0.00054 1.2E-08 71.3 10.4 162 167-338 21-205 (351)
111 TIGR00678 holB DNA polymerase 97.5 0.001 2.3E-08 63.2 11.6 63 275-337 95-159 (188)
112 PRK08118 topology modulation p 97.5 5.7E-05 1.2E-09 70.1 2.6 34 199-232 3-37 (167)
113 COG3903 Predicted ATPase [Gene 97.5 8.5E-05 1.8E-09 76.0 3.7 194 196-400 13-245 (414)
114 PRK09111 DNA polymerase III su 97.5 0.00069 1.5E-08 75.4 11.1 160 169-338 24-196 (598)
115 PRK14969 DNA polymerase III su 97.5 0.0009 2E-08 73.8 11.9 142 169-337 16-182 (527)
116 KOG3207 Beta-tubulin folding c 97.5 3.9E-05 8.5E-10 78.3 1.0 82 542-631 245-337 (505)
117 PRK05642 DNA replication initi 97.4 0.00055 1.2E-08 67.4 9.0 92 197-315 45-139 (234)
118 PRK14954 DNA polymerase III su 97.4 0.001 2.2E-08 74.1 11.8 164 169-338 16-191 (620)
119 PRK07764 DNA polymerase III su 97.4 0.00085 1.8E-08 77.3 11.4 157 169-338 15-184 (824)
120 PRK14959 DNA polymerase III su 97.4 0.00098 2.1E-08 73.6 11.2 157 169-338 16-183 (624)
121 PRK14952 DNA polymerase III su 97.4 0.0013 2.9E-08 72.7 12.3 157 169-338 13-182 (584)
122 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.5E-10 69.2 -2.9 113 516-638 28-141 (177)
123 PRK10536 hypothetical protein; 97.4 0.00091 2E-08 65.3 9.7 133 169-314 55-211 (262)
124 TIGR02639 ClpA ATP-dependent C 97.4 0.00069 1.5E-08 78.2 10.3 45 169-220 182-226 (731)
125 PRK14087 dnaA chromosomal repl 97.4 0.00049 1.1E-08 74.3 8.4 104 198-315 142-248 (450)
126 PRK15386 type III secretion pr 97.4 0.00014 3E-09 75.8 3.7 64 540-615 49-113 (426)
127 KOG4579 Leucine-rich repeat (L 97.4 5.8E-05 1.3E-09 65.0 0.7 90 514-615 52-141 (177)
128 PF04665 Pox_A32: Poxvirus A32 97.4 0.0003 6.4E-09 68.3 5.7 36 198-235 14-49 (241)
129 PRK14970 DNA polymerase III su 97.4 0.0014 3.1E-08 69.4 11.5 146 169-337 17-171 (367)
130 COG1373 Predicted ATPase (AAA+ 97.3 0.0013 2.9E-08 69.9 10.9 115 199-338 39-159 (398)
131 PRK12422 chromosomal replicati 97.3 0.00079 1.7E-08 72.5 9.1 123 197-337 141-275 (445)
132 TIGR03345 VI_ClpV1 type VI sec 97.3 0.001 2.3E-08 77.4 10.6 45 169-220 187-231 (852)
133 COG0542 clpA ATP-binding subun 97.3 0.0099 2.2E-07 66.9 17.7 123 169-303 491-620 (786)
134 PRK08181 transposase; Validate 97.3 0.0007 1.5E-08 67.6 7.3 99 199-315 108-208 (269)
135 PRK14971 DNA polymerase III su 97.2 0.0021 4.6E-08 72.1 11.5 146 169-338 17-185 (614)
136 TIGR00362 DnaA chromosomal rep 97.2 0.002 4.4E-08 69.2 11.0 101 197-315 136-241 (405)
137 CHL00181 cbbX CbbX; Provisiona 97.2 0.0041 8.8E-08 63.1 12.3 23 198-220 60-82 (287)
138 PRK09183 transposase/IS protei 97.2 0.00098 2.1E-08 66.6 7.6 100 198-315 103-205 (259)
139 PRK07952 DNA replication prote 97.2 0.0016 3.5E-08 64.0 8.8 103 197-315 99-204 (244)
140 PF13177 DNA_pol3_delta2: DNA 97.2 0.0052 1.1E-07 56.7 11.7 137 173-334 1-162 (162)
141 PRK07261 topology modulation p 97.2 0.00093 2E-08 62.3 6.8 65 199-286 2-67 (171)
142 PF05673 DUF815: Protein of un 97.2 0.00076 1.7E-08 65.0 6.2 124 165-319 23-154 (249)
143 PRK12377 putative replication 97.2 0.0013 2.7E-08 64.9 8.0 100 198-314 102-204 (248)
144 PRK14953 DNA polymerase III su 97.2 0.0045 9.7E-08 67.5 12.9 145 169-337 16-182 (486)
145 PRK14950 DNA polymerase III su 97.2 0.00095 2.1E-08 74.9 8.0 157 169-337 16-183 (585)
146 PRK14088 dnaA chromosomal repl 97.2 0.001 2.3E-08 71.7 8.0 100 198-314 131-235 (440)
147 PRK07133 DNA polymerase III su 97.2 0.0034 7.3E-08 70.5 12.1 156 169-338 18-182 (725)
148 TIGR02881 spore_V_K stage V sp 97.2 0.0021 4.6E-08 64.5 9.7 51 170-220 7-65 (261)
149 PRK14965 DNA polymerase III su 97.1 0.0028 6E-08 70.9 11.4 156 169-337 16-182 (576)
150 PRK08451 DNA polymerase III su 97.1 0.004 8.7E-08 68.0 12.2 143 169-338 14-181 (535)
151 TIGR02880 cbbX_cfxQ probable R 97.1 0.0019 4.1E-08 65.5 9.0 123 199-337 60-199 (284)
152 KOG4237 Extracellular matrix p 97.1 3.9E-05 8.5E-10 77.3 -3.1 103 545-654 69-175 (498)
153 PRK06921 hypothetical protein; 97.1 0.0017 3.7E-08 65.0 8.2 99 197-315 117-224 (266)
154 PRK06620 hypothetical protein; 97.1 0.0012 2.7E-08 63.8 6.9 23 198-220 45-67 (214)
155 PRK11034 clpA ATP-dependent Cl 97.1 0.004 8.8E-08 71.2 11.9 45 169-220 186-230 (758)
156 PRK06305 DNA polymerase III su 97.1 0.0029 6.4E-08 68.4 10.2 144 169-337 17-184 (451)
157 KOG1859 Leucine-rich repeat pr 97.1 0.00013 2.8E-09 79.0 -0.2 86 538-634 182-268 (1096)
158 PRK00149 dnaA chromosomal repl 97.0 0.0029 6.2E-08 69.0 10.1 101 197-315 148-253 (450)
159 PRK03992 proteasome-activating 97.0 0.0014 3.1E-08 69.6 7.5 52 169-220 131-188 (389)
160 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0027 5.9E-08 74.5 10.5 139 169-315 565-717 (852)
161 PRK06526 transposase; Provisio 97.0 0.00092 2E-08 66.4 5.5 99 198-315 99-200 (254)
162 CHL00095 clpC Clp protease ATP 97.0 0.0015 3.2E-08 76.5 7.8 45 169-220 179-223 (821)
163 PRK14086 dnaA chromosomal repl 97.0 0.005 1.1E-07 67.8 11.2 122 198-337 315-450 (617)
164 PF14516 AAA_35: AAA-like doma 97.0 0.0063 1.4E-07 63.2 11.5 183 165-357 7-246 (331)
165 PRK10787 DNA-binding ATP-depen 97.0 0.014 3.1E-07 67.4 15.3 52 168-220 321-372 (784)
166 PRK09361 radB DNA repair and r 97.0 0.003 6.4E-08 62.0 8.4 47 195-244 21-67 (225)
167 PRK10865 protein disaggregatio 96.9 0.0038 8.2E-08 73.1 10.5 126 169-302 568-696 (857)
168 KOG0531 Protein phosphatase 1, 96.9 0.00028 6.1E-09 76.1 1.2 109 511-634 91-200 (414)
169 PRK08939 primosomal protein Dn 96.9 0.0022 4.8E-08 65.5 7.6 121 173-314 135-259 (306)
170 PRK14948 DNA polymerase III su 96.9 0.007 1.5E-07 67.9 12.1 158 169-337 16-184 (620)
171 TIGR02237 recomb_radB DNA repa 96.9 0.0024 5.3E-08 61.8 7.6 49 195-246 10-58 (209)
172 TIGR00602 rad24 checkpoint pro 96.9 0.0015 3.3E-08 72.7 6.8 52 167-220 82-133 (637)
173 cd01393 recA_like RecA is a b 96.9 0.0051 1.1E-07 60.3 9.6 88 195-285 17-123 (226)
174 KOG1859 Leucine-rich repeat pr 96.9 7.2E-05 1.6E-09 80.9 -3.7 131 491-636 163-295 (1096)
175 PRK12608 transcription termina 96.9 0.0033 7.2E-08 64.9 8.2 101 177-285 119-229 (380)
176 cd03214 ABC_Iron-Siderophores_ 96.9 0.0071 1.5E-07 56.9 10.0 120 197-320 25-162 (180)
177 PF01695 IstB_IS21: IstB-like 96.9 0.00075 1.6E-08 63.2 3.2 99 198-315 48-149 (178)
178 TIGR02639 ClpA ATP-dependent C 96.9 0.0052 1.1E-07 71.1 10.7 123 169-302 454-579 (731)
179 PF07728 AAA_5: AAA domain (dy 96.9 0.00045 9.7E-09 62.1 1.6 89 200-301 2-90 (139)
180 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00087 1.9E-08 68.8 3.8 51 169-220 51-101 (361)
181 COG2884 FtsE Predicted ATPase 96.9 0.0066 1.4E-07 55.7 8.9 124 197-323 28-204 (223)
182 COG1484 DnaC DNA replication p 96.8 0.0022 4.8E-08 63.7 6.5 81 197-294 105-185 (254)
183 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0035 7.6E-08 73.1 9.1 137 169-314 566-717 (852)
184 COG0593 DnaA ATPase involved i 96.8 0.0033 7.2E-08 65.7 7.9 123 196-337 112-248 (408)
185 PF13207 AAA_17: AAA domain; P 96.8 0.00077 1.7E-08 58.8 2.8 22 199-220 1-22 (121)
186 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0041 8.8E-08 61.8 7.8 87 197-285 69-172 (274)
187 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0035 7.6E-08 73.6 8.7 45 169-220 173-217 (852)
188 PRK05541 adenylylsulfate kinas 96.8 0.0032 7E-08 59.1 6.9 36 196-233 6-41 (176)
189 PRK06647 DNA polymerase III su 96.8 0.012 2.7E-07 65.2 12.4 157 169-338 16-183 (563)
190 KOG0531 Protein phosphatase 1, 96.8 0.00031 6.8E-09 75.7 -0.1 120 514-648 71-191 (414)
191 cd01394 radB RadB. The archaea 96.8 0.0055 1.2E-07 59.7 8.7 44 195-240 17-60 (218)
192 PRK06835 DNA replication prote 96.8 0.0022 4.8E-08 66.0 6.0 102 198-315 184-288 (329)
193 cd03247 ABCC_cytochrome_bd The 96.7 0.0093 2E-07 56.0 9.7 126 197-330 28-169 (178)
194 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.011 2.3E-07 53.4 9.5 106 197-321 26-132 (144)
195 PRK05707 DNA polymerase III su 96.7 0.011 2.5E-07 61.0 10.8 64 275-338 105-170 (328)
196 PRK04296 thymidine kinase; Pro 96.7 0.0025 5.4E-08 60.6 5.5 113 198-317 3-117 (190)
197 PF02562 PhoH: PhoH-like prote 96.7 0.004 8.7E-08 59.1 6.8 129 173-314 4-154 (205)
198 KOG0989 Replication factor C, 96.7 0.0044 9.5E-08 61.1 7.1 153 169-339 36-194 (346)
199 TIGR02640 gas_vesic_GvpN gas v 96.7 0.01 2.2E-07 59.5 10.1 42 199-245 23-64 (262)
200 cd03228 ABCC_MRP_Like The MRP 96.7 0.0076 1.6E-07 56.2 8.6 125 197-330 28-167 (171)
201 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.016 3.5E-07 56.6 11.0 122 198-321 31-204 (254)
202 PRK10865 protein disaggregatio 96.7 0.0035 7.7E-08 73.3 7.6 45 169-220 178-222 (857)
203 PRK05563 DNA polymerase III su 96.7 0.019 4.2E-07 63.9 12.9 157 169-338 16-183 (559)
204 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0099 2.1E-07 58.7 9.7 90 195-285 17-124 (235)
205 PRK06696 uridine kinase; Valid 96.7 0.002 4.4E-08 63.0 4.6 44 173-220 2-45 (223)
206 PRK08058 DNA polymerase III su 96.6 0.014 3.1E-07 60.5 10.9 142 170-338 6-174 (329)
207 PRK13695 putative NTPase; Prov 96.6 0.00082 1.8E-08 63.0 1.5 22 199-220 2-23 (174)
208 COG4608 AppF ABC-type oligopep 96.6 0.011 2.4E-07 57.8 9.2 125 197-324 39-178 (268)
209 COG0470 HolB ATPase involved i 96.6 0.012 2.6E-07 61.2 10.3 125 170-315 2-148 (325)
210 cd03222 ABC_RNaseL_inhibitor T 96.6 0.01 2.2E-07 55.4 8.5 104 197-321 25-137 (177)
211 CHL00095 clpC Clp protease ATP 96.6 0.0098 2.1E-07 69.7 10.3 139 169-315 509-661 (821)
212 PF08423 Rad51: Rad51; InterP 96.5 0.0078 1.7E-07 60.0 7.9 56 197-253 38-97 (256)
213 PHA00729 NTP-binding motif con 96.5 0.0084 1.8E-07 57.7 7.6 25 196-220 16-40 (226)
214 cd03223 ABCD_peroxisomal_ALDP 96.5 0.02 4.3E-07 53.1 10.0 124 197-330 27-160 (166)
215 TIGR02238 recomb_DMC1 meiotic 96.5 0.01 2.2E-07 60.8 8.8 59 195-254 94-156 (313)
216 COG1136 SalX ABC-type antimicr 96.5 0.022 4.8E-07 54.8 10.4 61 263-323 147-210 (226)
217 KOG1514 Origin recognition com 96.5 0.018 3.8E-07 63.1 10.7 141 167-313 394-546 (767)
218 PRK07399 DNA polymerase III su 96.5 0.022 4.7E-07 58.6 10.9 162 169-338 4-187 (314)
219 TIGR00763 lon ATP-dependent pr 96.5 0.06 1.3E-06 62.8 15.7 51 169-220 320-370 (775)
220 COG1875 NYN ribonuclease and A 96.5 0.0054 1.2E-07 61.8 6.0 131 172-314 227-386 (436)
221 cd01131 PilT Pilus retraction 96.5 0.0036 7.9E-08 59.9 4.8 112 198-320 2-113 (198)
222 TIGR03499 FlhF flagellar biosy 96.5 0.0097 2.1E-07 60.3 8.1 88 196-285 193-281 (282)
223 cd03238 ABC_UvrA The excision 96.4 0.015 3.2E-07 54.3 8.6 122 197-330 21-161 (176)
224 TIGR03689 pup_AAA proteasome A 96.4 0.0074 1.6E-07 65.6 7.5 52 169-220 182-239 (512)
225 cd03216 ABC_Carb_Monos_I This 96.4 0.0074 1.6E-07 55.8 6.4 117 197-320 26-146 (163)
226 PRK12724 flagellar biosynthesi 96.4 0.013 2.8E-07 61.6 8.7 24 197-220 223-246 (432)
227 PRK06067 flagellar accessory p 96.3 0.017 3.6E-07 57.0 9.0 86 195-285 23-129 (234)
228 PRK06090 DNA polymerase III su 96.3 0.062 1.3E-06 55.1 13.2 64 275-338 107-172 (319)
229 cd00983 recA RecA is a bacter 96.3 0.01 2.2E-07 60.7 7.4 84 195-285 53-142 (325)
230 PRK11034 clpA ATP-dependent Cl 96.3 0.013 2.9E-07 67.1 9.1 122 170-302 459-583 (758)
231 PF00448 SRP54: SRP54-type pro 96.3 0.011 2.3E-07 56.3 7.1 56 198-255 2-58 (196)
232 cd03246 ABCC_Protease_Secretio 96.3 0.015 3.3E-07 54.3 8.0 125 197-330 28-168 (173)
233 PRK09354 recA recombinase A; P 96.3 0.016 3.5E-07 59.7 8.6 84 195-285 58-147 (349)
234 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.019 4.1E-07 52.2 8.1 117 198-317 3-139 (159)
235 PLN03187 meiotic recombination 96.3 0.016 3.5E-07 59.9 8.5 59 195-254 124-186 (344)
236 PRK08769 DNA polymerase III su 96.2 0.058 1.3E-06 55.3 12.4 64 275-338 112-177 (319)
237 KOG1969 DNA replication checkp 96.2 0.015 3.3E-07 63.8 8.3 90 194-301 323-412 (877)
238 TIGR02239 recomb_RAD51 DNA rep 96.2 0.021 4.6E-07 58.7 9.3 58 195-253 94-155 (316)
239 KOG0735 AAA+-type ATPase [Post 96.2 0.019 4.1E-07 62.8 8.9 71 197-285 431-503 (952)
240 PF00485 PRK: Phosphoribulokin 96.2 0.014 3.1E-07 55.6 7.5 81 199-281 1-88 (194)
241 PRK11889 flhF flagellar biosyn 96.2 0.041 8.9E-07 57.3 11.0 113 196-311 240-357 (436)
242 PRK12723 flagellar biosynthesi 96.2 0.042 9.1E-07 57.9 11.4 89 196-287 173-265 (388)
243 PRK04301 radA DNA repair and r 96.2 0.031 6.8E-07 57.8 10.4 58 195-253 100-161 (317)
244 cd02025 PanK Pantothenate kina 96.2 0.015 3.2E-07 56.6 7.5 22 199-220 1-22 (220)
245 KOG0733 Nuclear AAA ATPase (VC 96.2 0.013 2.9E-07 62.8 7.4 97 169-285 190-291 (802)
246 PHA02244 ATPase-like protein 96.2 0.031 6.6E-07 57.7 9.8 21 200-220 122-142 (383)
247 CHL00176 ftsH cell division pr 96.2 0.016 3.4E-07 65.3 8.4 97 169-285 183-284 (638)
248 COG2255 RuvB Holliday junction 96.2 0.0037 7.9E-08 61.0 2.9 50 169-220 26-75 (332)
249 cd01120 RecA-like_NTPases RecA 96.1 0.022 4.9E-07 52.2 8.2 40 199-240 1-40 (165)
250 TIGR02012 tigrfam_recA protein 96.1 0.016 3.5E-07 59.2 7.6 84 195-285 53-142 (321)
251 PTZ00454 26S protease regulato 96.1 0.014 3E-07 61.9 7.4 52 169-220 145-202 (398)
252 KOG2739 Leucine-rich acidic nu 96.1 0.0018 4E-08 62.3 0.7 85 569-655 61-155 (260)
253 PRK15455 PrkA family serine pr 96.1 0.0051 1.1E-07 66.6 4.1 50 170-220 77-126 (644)
254 COG3267 ExeA Type II secretory 96.1 0.082 1.8E-06 51.1 11.6 97 196-298 50-153 (269)
255 PRK07667 uridine kinase; Provi 96.1 0.0066 1.4E-07 57.8 4.4 38 178-220 3-40 (193)
256 COG1126 GlnQ ABC-type polar am 96.1 0.073 1.6E-06 50.2 10.9 124 197-323 28-203 (240)
257 cd03230 ABC_DR_subfamily_A Thi 96.1 0.033 7.2E-07 52.0 9.1 119 197-321 26-160 (173)
258 PF00560 LRR_1: Leucine Rich R 96.1 0.0023 5E-08 36.9 0.7 18 575-592 2-19 (22)
259 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0097 2.1E-07 57.6 5.5 23 197-219 29-51 (213)
260 COG4618 ArpD ABC-type protease 96.1 0.021 4.5E-07 60.3 8.1 56 267-322 481-538 (580)
261 KOG0741 AAA+-type ATPase [Post 96.1 0.061 1.3E-06 57.0 11.4 119 195-334 536-673 (744)
262 TIGR02858 spore_III_AA stage I 96.0 0.071 1.5E-06 53.4 11.7 116 196-321 110-234 (270)
263 cd03229 ABC_Class3 This class 96.0 0.015 3.3E-07 54.6 6.6 117 197-320 26-165 (178)
264 PLN03186 DNA repair protein RA 96.0 0.03 6.6E-07 58.0 9.2 59 195-254 121-183 (342)
265 PRK14722 flhF flagellar biosyn 96.0 0.017 3.8E-07 60.2 7.5 88 197-286 137-225 (374)
266 PRK00771 signal recognition pa 96.0 0.054 1.2E-06 58.0 11.2 86 196-285 94-184 (437)
267 PRK05703 flhF flagellar biosyn 96.0 0.048 1.1E-06 58.5 11.0 86 197-285 221-308 (424)
268 PRK14974 cell division protein 96.0 0.043 9.3E-07 56.7 10.0 114 196-312 139-260 (336)
269 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.0098 2.1E-07 57.1 5.0 120 197-323 29-158 (204)
270 PTZ00035 Rad51 protein; Provis 95.9 0.042 9.1E-07 57.0 9.9 58 195-253 116-177 (337)
271 PRK06871 DNA polymerase III su 95.9 0.11 2.3E-06 53.5 12.6 65 274-338 105-171 (325)
272 TIGR00235 udk uridine kinase. 95.9 0.0063 1.4E-07 58.8 3.4 26 195-220 4-29 (207)
273 PRK09270 nucleoside triphospha 95.9 0.034 7.3E-07 54.6 8.6 26 195-220 31-56 (229)
274 PTZ00361 26 proteosome regulat 95.9 0.013 2.7E-07 62.8 5.9 52 169-220 183-240 (438)
275 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.09 1.9E-06 50.7 11.4 24 197-220 34-57 (207)
276 TIGR02236 recomb_radA DNA repa 95.9 0.048 1E-06 56.3 10.1 58 195-253 93-154 (310)
277 PF13238 AAA_18: AAA domain; P 95.9 0.0054 1.2E-07 54.0 2.5 21 200-220 1-21 (129)
278 PRK05480 uridine/cytidine kina 95.9 0.0065 1.4E-07 58.8 3.3 25 196-220 5-29 (209)
279 COG1618 Predicted nucleotide k 95.8 0.0056 1.2E-07 54.6 2.4 24 197-220 5-28 (179)
280 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.018 3.8E-07 52.9 5.9 116 198-321 26-145 (157)
281 PF13604 AAA_30: AAA domain; P 95.8 0.019 4E-07 54.9 5.9 102 198-314 19-129 (196)
282 PRK08233 hypothetical protein; 95.8 0.0076 1.7E-07 56.8 3.2 24 197-220 3-26 (182)
283 cd03215 ABC_Carb_Monos_II This 95.7 0.076 1.6E-06 50.0 9.9 24 197-220 26-49 (182)
284 PRK06964 DNA polymerase III su 95.7 0.097 2.1E-06 54.2 11.3 64 275-338 131-196 (342)
285 cd03213 ABCG_EPDR ABCG transpo 95.7 0.074 1.6E-06 50.7 9.9 118 197-317 35-172 (194)
286 COG0468 RecA RecA/RadA recombi 95.7 0.038 8.3E-07 55.2 8.0 88 195-285 58-150 (279)
287 KOG0991 Replication factor C, 95.7 0.022 4.8E-07 53.9 5.8 46 168-220 26-71 (333)
288 COG2607 Predicted ATPase (AAA+ 95.7 0.049 1.1E-06 52.0 8.1 104 166-302 57-166 (287)
289 PF00006 ATP-synt_ab: ATP synt 95.7 0.023 5E-07 54.7 6.3 82 198-285 16-114 (215)
290 PF14532 Sigma54_activ_2: Sigm 95.7 0.0056 1.2E-07 54.8 1.9 107 172-315 1-109 (138)
291 cd03115 SRP The signal recogni 95.7 0.031 6.8E-07 52.2 7.0 22 199-220 2-23 (173)
292 COG0396 sufC Cysteine desulfur 95.7 0.11 2.4E-06 49.5 10.3 63 265-329 151-217 (251)
293 PRK06002 fliI flagellum-specif 95.6 0.054 1.2E-06 57.7 9.3 86 197-285 165-263 (450)
294 PRK12727 flagellar biosynthesi 95.6 0.028 6E-07 60.8 7.2 87 196-285 349-437 (559)
295 TIGR00554 panK_bact pantothena 95.6 0.044 9.6E-07 55.3 8.3 25 195-219 60-84 (290)
296 PRK08972 fliI flagellum-specif 95.6 0.045 9.7E-07 58.0 8.6 85 197-285 162-261 (444)
297 cd03253 ABCC_ATM1_transporter 95.6 0.077 1.7E-06 52.4 10.0 62 267-330 146-208 (236)
298 PTZ00301 uridine kinase; Provi 95.6 0.0085 1.9E-07 57.6 3.0 24 197-220 3-26 (210)
299 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.064 1.4E-06 52.9 9.3 49 195-248 19-68 (237)
300 KOG2004 Mitochondrial ATP-depe 95.6 0.13 2.9E-06 56.5 12.1 105 168-285 410-514 (906)
301 cd02019 NK Nucleoside/nucleoti 95.6 0.0081 1.7E-07 46.4 2.3 22 199-220 1-22 (69)
302 TIGR00959 ffh signal recogniti 95.6 0.041 8.8E-07 58.8 8.2 88 196-285 98-191 (428)
303 PRK05439 pantothenate kinase; 95.6 0.058 1.2E-06 54.9 8.9 79 195-277 84-166 (311)
304 PRK10867 signal recognition pa 95.6 0.043 9.3E-07 58.6 8.4 87 196-285 99-192 (433)
305 PRK11608 pspF phage shock prot 95.6 0.027 5.9E-07 58.4 6.8 47 169-220 6-52 (326)
306 COG0466 Lon ATP-dependent Lon 95.6 0.013 2.7E-07 64.5 4.3 102 169-285 323-426 (782)
307 TIGR01241 FtsH_fam ATP-depende 95.6 0.023 5E-07 62.7 6.6 52 169-220 55-111 (495)
308 PRK06547 hypothetical protein; 95.6 0.015 3.3E-07 54.0 4.4 25 196-220 14-38 (172)
309 COG0572 Udk Uridine kinase [Nu 95.6 0.01 2.3E-07 56.3 3.3 26 195-220 6-31 (218)
310 PRK08699 DNA polymerase III su 95.6 0.06 1.3E-06 55.6 9.1 63 276-338 113-177 (325)
311 PF00560 LRR_1: Leucine Rich R 95.5 0.0063 1.4E-07 35.1 1.1 21 597-618 1-21 (22)
312 PF07693 KAP_NTPase: KAP famil 95.5 0.13 2.7E-06 53.6 11.7 41 176-220 3-43 (325)
313 cd03244 ABCC_MRP_domain2 Domai 95.5 0.097 2.1E-06 51.0 10.2 24 197-220 30-53 (221)
314 PRK13531 regulatory ATPase Rav 95.5 0.015 3.4E-07 62.1 4.7 43 169-220 20-62 (498)
315 PLN00020 ribulose bisphosphate 95.5 0.028 6.1E-07 57.7 6.2 26 195-220 146-171 (413)
316 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.062 1.4E-06 51.5 8.5 120 197-320 26-168 (200)
317 cd03250 ABCC_MRP_domain1 Domai 95.4 0.19 4.2E-06 48.3 11.8 131 197-330 31-200 (204)
318 PRK09544 znuC high-affinity zi 95.4 0.098 2.1E-06 52.1 9.9 24 197-220 30-53 (251)
319 COG2274 SunT ABC-type bacterio 95.4 0.08 1.7E-06 60.3 10.3 24 197-220 499-522 (709)
320 PRK06762 hypothetical protein; 95.4 0.011 2.4E-07 54.8 2.9 23 198-220 3-25 (166)
321 PF13671 AAA_33: AAA domain; P 95.4 0.012 2.6E-07 52.9 3.1 21 199-219 1-21 (143)
322 KOG0924 mRNA splicing factor A 95.4 0.12 2.7E-06 56.2 10.8 129 197-331 371-528 (1042)
323 cd03232 ABC_PDR_domain2 The pl 95.4 0.082 1.8E-06 50.3 8.9 24 197-220 33-56 (192)
324 cd03254 ABCC_Glucan_exporter_l 95.4 0.14 3E-06 50.3 10.7 23 198-220 30-52 (229)
325 PRK12726 flagellar biosynthesi 95.4 0.1 2.2E-06 54.2 9.9 89 195-286 204-295 (407)
326 cd01121 Sms Sms (bacterial rad 95.4 0.074 1.6E-06 55.9 9.2 82 196-285 81-167 (372)
327 COG0563 Adk Adenylate kinase a 95.3 0.024 5.2E-07 53.0 4.8 22 199-220 2-23 (178)
328 PRK00889 adenylylsulfate kinas 95.3 0.028 6.1E-07 52.6 5.4 24 197-220 4-27 (175)
329 COG1102 Cmk Cytidylate kinase 95.3 0.031 6.8E-07 50.0 5.1 44 199-255 2-45 (179)
330 PRK15429 formate hydrogenlyase 95.3 0.057 1.2E-06 62.2 8.8 47 169-220 376-422 (686)
331 TIGR02868 CydC thiol reductant 95.3 0.1 2.3E-06 58.3 10.6 25 196-220 360-384 (529)
332 TIGR00064 ftsY signal recognit 95.2 0.08 1.7E-06 53.3 8.6 87 196-285 71-163 (272)
333 PRK09580 sufC cysteine desulfu 95.2 0.15 3.1E-06 50.8 10.4 24 197-220 27-50 (248)
334 KOG2228 Origin recognition com 95.2 0.085 1.8E-06 53.0 8.3 142 169-316 24-182 (408)
335 cd02027 APSK Adenosine 5'-phos 95.2 0.034 7.4E-07 50.4 5.3 22 199-220 1-22 (149)
336 PRK14723 flhF flagellar biosyn 95.2 0.079 1.7E-06 60.1 9.1 86 197-285 185-272 (767)
337 PRK03839 putative kinase; Prov 95.2 0.014 3E-07 55.0 2.7 22 199-220 2-23 (180)
338 cd02023 UMPK Uridine monophosp 95.2 0.012 2.5E-07 56.5 2.3 22 199-220 1-22 (198)
339 TIGR01360 aden_kin_iso1 adenyl 95.1 0.015 3.4E-07 55.0 3.0 25 196-220 2-26 (188)
340 COG1222 RPT1 ATP-dependent 26S 95.1 0.086 1.9E-06 53.4 8.2 95 170-285 152-253 (406)
341 cd02028 UMPK_like Uridine mono 95.1 0.032 6.9E-07 52.4 5.0 22 199-220 1-22 (179)
342 PRK14721 flhF flagellar biosyn 95.1 0.09 1.9E-06 55.9 8.9 88 196-285 190-278 (420)
343 cd01122 GP4d_helicase GP4d_hel 95.1 0.19 4.1E-06 50.8 11.0 53 197-252 30-82 (271)
344 TIGR02974 phageshock_pspF psp 95.1 0.048 1E-06 56.5 6.7 45 171-220 1-45 (329)
345 KOG2120 SCF ubiquitin ligase, 95.1 0.0037 8.1E-08 61.1 -1.4 37 514-552 233-269 (419)
346 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.083 1.8E-06 52.9 8.0 41 195-237 34-74 (259)
347 TIGR01243 CDC48 AAA family ATP 95.0 0.033 7.1E-07 64.7 5.9 52 169-220 178-235 (733)
348 cd01136 ATPase_flagellum-secre 95.0 0.12 2.5E-06 53.1 9.1 85 197-285 69-168 (326)
349 PRK03846 adenylylsulfate kinas 95.0 0.04 8.6E-07 52.7 5.5 25 196-220 23-47 (198)
350 PF12775 AAA_7: P-loop contain 95.0 0.022 4.7E-07 57.3 3.8 88 179-287 23-111 (272)
351 PTZ00088 adenylate kinase 1; P 95.0 0.022 4.7E-07 55.6 3.7 21 200-220 9-29 (229)
352 PRK07594 type III secretion sy 95.0 0.11 2.4E-06 55.2 9.2 85 197-285 155-254 (433)
353 PF01583 APS_kinase: Adenylyls 94.9 0.03 6.6E-07 50.7 4.2 36 197-234 2-37 (156)
354 PRK04040 adenylate kinase; Pro 94.9 0.018 4E-07 54.4 2.9 23 198-220 3-25 (188)
355 KOG0744 AAA+-type ATPase [Post 94.9 0.091 2E-06 52.4 7.6 79 197-285 177-259 (423)
356 TIGR00390 hslU ATP-dependent p 94.9 0.055 1.2E-06 56.8 6.5 82 169-252 12-104 (441)
357 TIGR00150 HI0065_YjeE ATPase, 94.9 0.031 6.7E-07 49.2 4.0 25 197-221 22-46 (133)
358 TIGR02322 phosphon_PhnN phosph 94.9 0.019 4.1E-07 54.0 2.9 23 198-220 2-24 (179)
359 cd02024 NRK1 Nicotinamide ribo 94.9 0.015 3.4E-07 54.6 2.2 22 199-220 1-22 (187)
360 TIGR03498 FliI_clade3 flagella 94.9 0.12 2.6E-06 55.0 9.0 85 197-285 140-239 (418)
361 PRK09280 F0F1 ATP synthase sub 94.9 0.1 2.2E-06 55.9 8.4 88 197-285 144-247 (463)
362 PRK10751 molybdopterin-guanine 94.9 0.026 5.6E-07 52.2 3.5 25 196-220 5-29 (173)
363 PF07724 AAA_2: AAA domain (Cd 94.8 0.016 3.5E-07 53.8 2.2 40 197-238 3-43 (171)
364 PRK06995 flhF flagellar biosyn 94.8 0.096 2.1E-06 56.6 8.3 86 197-285 256-343 (484)
365 TIGR01420 pilT_fam pilus retra 94.8 0.053 1.1E-06 56.7 6.3 112 198-320 123-234 (343)
366 PRK08927 fliI flagellum-specif 94.8 0.13 2.8E-06 54.8 9.1 85 197-285 158-257 (442)
367 KOG1644 U2-associated snRNP A' 94.8 0.023 5.1E-07 52.7 3.0 81 539-627 60-147 (233)
368 PRK15064 ABC transporter ATP-b 94.8 0.24 5.2E-06 55.4 11.8 24 197-220 27-50 (530)
369 PRK00625 shikimate kinase; Pro 94.8 0.019 4.1E-07 53.4 2.5 22 199-220 2-23 (173)
370 COG0542 clpA ATP-binding subun 94.8 0.12 2.6E-06 58.5 9.2 150 169-339 170-339 (786)
371 PTZ00185 ATPase alpha subunit; 94.8 0.15 3.3E-06 54.7 9.4 89 197-285 189-298 (574)
372 COG1131 CcmA ABC-type multidru 94.8 0.22 4.7E-06 50.8 10.4 24 197-220 31-54 (293)
373 COG1428 Deoxynucleoside kinase 94.8 0.019 4.2E-07 53.9 2.4 24 197-220 4-27 (216)
374 PF00154 RecA: recA bacterial 94.8 0.037 8E-07 56.4 4.7 83 196-285 52-140 (322)
375 cd03280 ABC_MutS2 MutS2 homolo 94.7 0.23 5E-06 47.6 10.0 21 198-218 29-49 (200)
376 cd03285 ABC_MSH2_euk MutS2 hom 94.7 0.019 4.2E-07 55.9 2.5 120 196-322 29-159 (222)
377 KOG1051 Chaperone HSP104 and r 94.7 0.18 3.9E-06 58.0 10.4 122 170-302 563-686 (898)
378 TIGR01817 nifA Nif-specific re 94.7 0.07 1.5E-06 59.6 7.3 49 167-220 194-242 (534)
379 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.16 3.4E-06 49.9 9.0 41 196-238 19-59 (229)
380 TIGR03263 guanyl_kin guanylate 94.7 0.023 5E-07 53.4 3.0 23 198-220 2-24 (180)
381 PRK07993 DNA polymerase III su 94.7 0.41 8.8E-06 49.7 12.3 65 274-338 106-172 (334)
382 cd04159 Arl10_like Arl10-like 94.7 0.13 2.8E-06 46.6 8.0 21 200-220 2-22 (159)
383 PRK13545 tagH teichoic acids e 94.7 0.26 5.6E-06 53.8 11.1 24 197-220 50-73 (549)
384 PRK00131 aroK shikimate kinase 94.7 0.022 4.7E-07 53.2 2.7 24 197-220 4-27 (175)
385 PF00005 ABC_tran: ABC transpo 94.7 0.036 7.9E-07 49.4 4.0 23 198-220 12-34 (137)
386 PF00910 RNA_helicase: RNA hel 94.7 0.016 3.5E-07 49.2 1.6 21 200-220 1-21 (107)
387 smart00534 MUTSac ATPase domai 94.7 0.18 3.8E-06 47.7 8.9 21 199-219 1-21 (185)
388 cd01135 V_A-ATPase_B V/A-type 94.7 0.13 2.9E-06 51.0 8.2 89 197-285 69-175 (276)
389 cd01134 V_A-ATPase_A V/A-type 94.6 0.2 4.3E-06 51.4 9.5 48 197-248 157-205 (369)
390 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.16 3.5E-06 50.4 8.7 82 198-285 70-170 (274)
391 PRK04328 hypothetical protein; 94.6 0.12 2.6E-06 51.4 8.0 41 196-238 22-62 (249)
392 TIGR00708 cobA cob(I)alamin ad 94.6 0.18 4E-06 46.4 8.4 117 197-316 5-140 (173)
393 PRK05022 anaerobic nitric oxid 94.6 0.096 2.1E-06 58.0 7.9 48 168-220 186-233 (509)
394 PRK12597 F0F1 ATP synthase sub 94.6 0.11 2.3E-06 55.9 7.9 88 197-285 143-246 (461)
395 TIGR02788 VirB11 P-type DNA tr 94.6 0.053 1.1E-06 55.8 5.5 114 197-320 144-257 (308)
396 TIGR01069 mutS2 MutS2 family p 94.6 0.033 7.1E-07 64.3 4.3 24 197-220 322-345 (771)
397 PF05659 RPW8: Arabidopsis bro 94.6 0.87 1.9E-05 40.9 12.5 111 2-140 3-114 (147)
398 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.021 4.6E-07 53.8 2.2 22 199-220 1-22 (183)
399 TIGR03496 FliI_clade1 flagella 94.5 0.13 2.9E-06 54.6 8.4 85 197-285 137-236 (411)
400 PRK05922 type III secretion sy 94.5 0.24 5.2E-06 52.8 10.2 85 197-285 157-256 (434)
401 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.037 8E-07 56.5 4.0 52 168-220 60-111 (358)
402 PF08433 KTI12: Chromatin asso 94.5 0.066 1.4E-06 53.6 5.8 23 198-220 2-24 (270)
403 COG2812 DnaX DNA polymerase II 94.5 0.021 4.6E-07 61.7 2.4 157 169-338 16-183 (515)
404 cd01125 repA Hexameric Replica 94.5 0.14 3E-06 50.6 8.1 21 199-219 3-23 (239)
405 PF03205 MobB: Molybdopterin g 94.5 0.028 6.1E-07 50.3 2.8 39 198-237 1-39 (140)
406 PRK08149 ATP synthase SpaL; Va 94.5 0.14 3.1E-06 54.4 8.4 85 197-285 151-250 (428)
407 TIGR00958 3a01208 Conjugate Tr 94.5 0.3 6.5E-06 56.6 11.9 24 197-220 507-530 (711)
408 PRK06217 hypothetical protein; 94.5 0.025 5.4E-07 53.4 2.5 23 199-221 3-25 (183)
409 KOG1644 U2-associated snRNP A' 94.4 0.024 5.1E-07 52.7 2.1 87 510-607 59-151 (233)
410 cd02021 GntK Gluconate kinase 94.4 0.026 5.6E-07 51.3 2.4 22 199-220 1-22 (150)
411 PRK14738 gmk guanylate kinase; 94.4 0.037 8.1E-07 53.3 3.6 26 195-220 11-36 (206)
412 TIGR03375 type_I_sec_LssB type 94.4 0.25 5.3E-06 57.3 10.9 24 197-220 491-514 (694)
413 PRK12678 transcription termina 94.3 0.062 1.4E-06 58.3 5.3 85 197-285 416-512 (672)
414 KOG2123 Uncharacterized conser 94.3 0.0086 1.9E-07 58.1 -0.9 99 514-626 18-123 (388)
415 cd00227 CPT Chloramphenicol (C 94.3 0.029 6.3E-07 52.5 2.6 23 198-220 3-25 (175)
416 PRK00300 gmk guanylate kinase; 94.3 0.031 6.8E-07 53.8 2.9 24 197-220 5-28 (205)
417 PRK06936 type III secretion sy 94.3 0.23 5E-06 52.9 9.5 85 197-285 162-261 (439)
418 PRK05688 fliI flagellum-specif 94.3 0.22 4.8E-06 53.2 9.4 85 197-285 168-267 (451)
419 COG0467 RAD55 RecA-superfamily 94.3 0.071 1.5E-06 53.5 5.6 51 195-249 21-71 (260)
420 KOG1909 Ran GTPase-activating 94.3 0.027 6E-07 56.5 2.4 134 491-632 156-310 (382)
421 cd02020 CMPK Cytidine monophos 94.3 0.029 6.2E-07 50.6 2.4 22 199-220 1-22 (147)
422 PRK10078 ribose 1,5-bisphospho 94.3 0.034 7.5E-07 52.6 3.0 23 198-220 3-25 (186)
423 cd00820 PEPCK_HprK Phosphoenol 94.3 0.04 8.7E-07 46.3 3.0 22 197-218 15-36 (107)
424 PRK05800 cobU adenosylcobinami 94.3 0.11 2.3E-06 48.3 6.2 80 199-285 3-85 (170)
425 COG1124 DppF ABC-type dipeptid 94.3 0.034 7.4E-07 53.4 2.9 24 197-220 33-56 (252)
426 cd03287 ABC_MSH3_euk MutS3 hom 94.2 0.29 6.3E-06 47.5 9.5 118 197-322 31-160 (222)
427 PF07726 AAA_3: ATPase family 94.2 0.02 4.3E-07 49.6 1.2 27 200-228 2-28 (131)
428 cd00071 GMPK Guanosine monopho 94.2 0.032 6.8E-07 49.8 2.5 22 199-220 1-22 (137)
429 PRK04132 replication factor C 94.2 0.27 5.8E-06 56.9 10.4 117 205-337 574-693 (846)
430 TIGR02655 circ_KaiC circadian 94.2 0.21 4.6E-06 54.9 9.4 98 178-285 249-362 (484)
431 PRK13409 putative ATPase RIL; 94.2 0.28 6.1E-06 55.2 10.5 131 197-331 365-528 (590)
432 COG0488 Uup ATPase components 94.2 0.29 6.4E-06 53.8 10.3 132 198-332 349-511 (530)
433 cd00544 CobU Adenosylcobinamid 94.2 0.11 2.4E-06 48.1 6.0 80 199-285 1-82 (169)
434 PRK05201 hslU ATP-dependent pr 94.2 0.083 1.8E-06 55.6 5.7 82 169-252 15-107 (443)
435 PRK13949 shikimate kinase; Pro 94.1 0.033 7.1E-07 51.8 2.5 22 199-220 3-24 (169)
436 PRK06793 fliI flagellum-specif 94.1 0.18 3.9E-06 53.8 8.3 121 197-322 156-292 (432)
437 PLN02318 phosphoribulokinase/u 94.1 0.057 1.2E-06 59.0 4.6 26 195-220 63-88 (656)
438 PF00158 Sigma54_activat: Sigm 94.1 0.08 1.7E-06 49.0 5.1 45 171-220 1-45 (168)
439 PRK08533 flagellar accessory p 94.1 0.18 3.9E-06 49.4 7.8 48 196-248 23-71 (230)
440 cd03243 ABC_MutS_homologs The 94.1 0.2 4.4E-06 48.0 8.1 22 198-219 30-51 (202)
441 TIGR03575 selen_PSTK_euk L-ser 94.1 0.12 2.7E-06 53.3 6.8 21 200-220 2-22 (340)
442 COG0488 Uup ATPase components 94.1 0.33 7.2E-06 53.4 10.5 66 263-331 158-224 (530)
443 PTZ00494 tuzin-like protein; P 94.1 0.3 6.4E-06 51.2 9.4 108 164-283 366-478 (664)
444 PRK07196 fliI flagellum-specif 94.1 0.16 3.4E-06 54.2 7.8 24 197-220 155-178 (434)
445 PRK11823 DNA repair protein Ra 94.0 0.24 5.3E-06 53.6 9.3 95 178-285 66-165 (446)
446 PF03193 DUF258: Protein of un 94.0 0.068 1.5E-06 48.7 4.3 36 176-221 24-59 (161)
447 TIGR00960 3a0501s02 Type II (G 94.0 0.063 1.4E-06 52.1 4.5 34 197-233 29-62 (216)
448 PRK09099 type III secretion sy 94.0 0.19 4.2E-06 53.7 8.4 85 197-285 163-262 (441)
449 PF08477 Miro: Miro-like prote 94.0 0.04 8.7E-07 47.6 2.8 22 200-221 2-23 (119)
450 COG1936 Predicted nucleotide k 94.0 0.041 8.8E-07 50.0 2.7 20 199-218 2-21 (180)
451 PRK13947 shikimate kinase; Pro 94.0 0.035 7.6E-07 51.7 2.5 22 199-220 3-24 (171)
452 PRK14257 phosphate ABC transpo 94.0 0.33 7.2E-06 50.4 9.9 25 197-221 108-132 (329)
453 PRK13657 cyclic beta-1,2-gluca 94.0 0.25 5.4E-06 56.1 9.8 24 197-220 361-384 (588)
454 TIGR01425 SRP54_euk signal rec 94.0 0.17 3.7E-06 53.8 7.8 25 196-220 99-123 (429)
455 PF06309 Torsin: Torsin; Inte 94.0 0.067 1.5E-06 46.2 3.9 47 170-220 26-76 (127)
456 PRK05973 replicative DNA helic 93.9 0.17 3.7E-06 49.5 7.1 48 197-248 64-111 (237)
457 KOG1532 GTPase XAB1, interacts 93.9 0.039 8.5E-07 53.5 2.6 26 195-220 17-42 (366)
458 COG4181 Predicted ABC-type tra 93.9 0.64 1.4E-05 42.2 10.0 84 240-324 122-215 (228)
459 COG2401 ABC-type ATPase fused 93.9 0.061 1.3E-06 55.4 4.0 157 170-327 372-579 (593)
460 TIGR01166 cbiO cobalt transpor 93.9 0.072 1.6E-06 50.6 4.5 24 197-220 18-41 (190)
461 PRK14737 gmk guanylate kinase; 93.9 0.054 1.2E-06 51.1 3.5 25 196-220 3-27 (186)
462 PF13481 AAA_25: AAA domain; P 93.9 0.17 3.6E-06 48.1 7.0 41 198-238 33-81 (193)
463 PRK06731 flhF flagellar biosyn 93.9 0.32 6.9E-06 48.7 9.1 112 197-311 75-191 (270)
464 PF03308 ArgK: ArgK protein; 93.9 0.077 1.7E-06 51.8 4.5 39 177-220 14-52 (266)
465 cd03297 ABC_ModC_molybdenum_tr 93.9 0.076 1.6E-06 51.5 4.7 35 195-233 22-56 (214)
466 cd03284 ABC_MutS1 MutS1 homolo 93.9 0.19 4.2E-06 48.7 7.4 22 198-219 31-52 (216)
467 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.9 0.07 1.5E-06 51.9 4.4 34 197-233 30-63 (218)
468 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.15 3.2E-06 54.5 7.1 88 197-285 138-241 (449)
469 TIGR00455 apsK adenylylsulfate 93.9 0.21 4.7E-06 47.0 7.6 25 196-220 17-41 (184)
470 TIGR02673 FtsE cell division A 93.9 0.071 1.5E-06 51.7 4.4 34 197-233 28-61 (214)
471 KOG0734 AAA+-type ATPase conta 93.8 0.16 3.4E-06 54.1 6.9 55 169-223 304-363 (752)
472 COG4240 Predicted kinase [Gene 93.8 0.21 4.5E-06 47.3 7.1 81 195-276 48-133 (300)
473 TIGR03497 FliI_clade2 flagella 93.8 0.27 5.8E-06 52.4 8.9 85 197-285 137-236 (413)
474 PRK08472 fliI flagellum-specif 93.8 0.22 4.8E-06 53.1 8.3 40 197-240 157-196 (434)
475 cd03269 ABC_putative_ATPase Th 93.8 0.076 1.6E-06 51.3 4.5 24 197-220 26-49 (210)
476 cd03265 ABC_DrrA DrrA is the A 93.8 0.076 1.7E-06 51.7 4.5 34 197-233 26-59 (220)
477 cd00464 SK Shikimate kinase (S 93.7 0.043 9.3E-07 50.0 2.5 21 200-220 2-22 (154)
478 KOG2739 Leucine-rich acidic nu 93.7 0.04 8.6E-07 53.4 2.3 82 572-655 42-128 (260)
479 PRK14530 adenylate kinase; Pro 93.7 0.042 9.2E-07 53.3 2.6 22 199-220 5-26 (215)
480 TIGR00416 sms DNA repair prote 93.7 0.33 7.2E-06 52.6 9.6 97 176-285 78-179 (454)
481 PRK13409 putative ATPase RIL; 93.7 0.32 7E-06 54.8 9.9 25 196-220 98-122 (590)
482 PRK13975 thymidylate kinase; P 93.7 0.048 1E-06 52.0 2.9 23 198-220 3-25 (196)
483 TIGR01039 atpD ATP synthase, F 93.7 0.2 4.2E-06 53.6 7.6 88 197-285 143-246 (461)
484 TIGR01313 therm_gnt_kin carboh 93.7 0.038 8.3E-07 51.0 2.1 21 200-220 1-21 (163)
485 PRK05057 aroK shikimate kinase 93.7 0.047 1E-06 50.9 2.7 23 198-220 5-27 (172)
486 PRK09519 recA DNA recombinatio 93.7 0.27 5.8E-06 56.2 9.1 84 195-285 58-147 (790)
487 PRK11174 cysteine/glutathione 93.7 0.48 1E-05 53.8 11.3 24 197-220 376-399 (588)
488 TIGR02857 CydD thiol reductant 93.7 0.56 1.2E-05 52.4 11.8 24 197-220 348-371 (529)
489 COG2019 AdkA Archaeal adenylat 93.7 0.057 1.2E-06 48.6 3.0 24 197-220 4-27 (189)
490 TIGR00176 mobB molybdopterin-g 93.7 0.042 9.1E-07 50.2 2.3 22 199-220 1-22 (155)
491 TIGR02030 BchI-ChlI magnesium 93.7 0.081 1.8E-06 54.8 4.6 44 169-219 4-47 (337)
492 PRK10820 DNA-binding transcrip 93.7 0.14 3E-06 56.8 6.8 47 169-220 204-250 (520)
493 PRK10416 signal recognition pa 93.6 0.36 7.8E-06 49.7 9.3 25 196-220 113-137 (318)
494 KOG0733 Nuclear AAA ATPase (VC 93.6 0.15 3.3E-06 55.1 6.5 69 197-285 545-613 (802)
495 TIGR01192 chvA glucan exporter 93.6 0.49 1.1E-05 53.5 11.3 24 197-220 361-384 (585)
496 cd03225 ABC_cobalt_CbiO_domain 93.6 0.081 1.8E-06 51.2 4.4 24 197-220 27-50 (211)
497 TIGR00073 hypB hydrogenase acc 93.6 0.056 1.2E-06 52.1 3.2 26 195-220 20-45 (207)
498 COG1120 FepC ABC-type cobalami 93.6 0.084 1.8E-06 51.9 4.4 35 197-234 28-62 (258)
499 PRK13765 ATP-dependent proteas 93.6 0.11 2.4E-06 58.4 5.8 75 169-254 31-105 (637)
500 PRK07960 fliI flagellum-specif 93.6 0.16 3.5E-06 54.1 6.7 24 197-220 175-198 (455)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-77 Score=675.49 Aligned_cols=618 Identities=27% Similarity=0.400 Sum_probs=488.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhhhhhhHHH
Q 005860 3 DAIVSPLLEQLISISLEEAREQMKLVVGIDNEVAKLKHNFLAIQAVLVDAEQRQFKEETVRLWLDQLKDVSYYMGDVLDE 82 (673)
Q Consensus 3 ~a~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~i~~L~~~L~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ay~~ed~lD~ 82 (673)
++.++..++++.+. +.++...+.+.++.+..|++.|..+++++++|+.++.....+..|...+++++|++||+++.
T Consensus 2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777665 56677888999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcccccccccCCccccCccchhhhHHHHHHHHHHHHHHHHHHhhcccCCccc----ccC-CCCc
Q 005860 83 WNTARLKLRIEGVDALVPQRKVCSFLPAASCFGFSQTFQRRDIAVKIKAINGKLDDIAKQKDMYNFNV----IRS-TENS 157 (673)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~----~~~-~~~~ 157 (673)
|.......+..+.-... ....+.+ |.. ..++..+..+..+.+++.++.+....+.... ... ..+.
T Consensus 78 ~~v~~~~~~~~~~l~~~--~~~~~~~------c~~--~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~ 147 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTR--SVERQRL------CLC--GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR 147 (889)
T ss_pred HHHHHHHHHHhHHhhhh--HHHHHHH------hhh--hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence 98776554322211000 0000101 000 2334455555555555555555444443222 111 1111
Q ss_pred ccccccccccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc-ccccCCeEEEEEcC
Q 005860 158 ERIQSTSLIDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD-VFEYFDKRMWVCVS 236 (673)
Q Consensus 158 ~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 236 (673)
....+.+.....+ ||.+..++++.+.|.+++ ..+++|+||||+||||||+.++|+.. ++.+||.++||+||
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~-------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VS 219 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDD-------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVS 219 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCC-------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEc
Confidence 1223333333334 999999999999998776 38999999999999999999999987 99999999999999
Q ss_pred CcccHHHHHHHHHHHhhCCCCCcC--cHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC
Q 005860 237 DPFDELRIAKAIIEALEGFVPTVG--ELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR 314 (673)
Q Consensus 237 ~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 314 (673)
+.++...++.+|+..++..+.... +.++++..+.+.|++|||+|||||||+. .+|+.+..++|...+||||++|||
T Consensus 220 k~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTR 297 (889)
T KOG4658|consen 220 KEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTR 297 (889)
T ss_pred ccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEec
Confidence 999999999999999988544322 2478899999999999999999999986 469999999999999999999999
Q ss_pred ChhHHHh-ccccceeecCCCCccccc----------------------------cCCchhhHHHHhhhhccCCCHHHHHH
Q 005860 315 KETVARM-MESIHVISIKELSEQECW----------------------------CKGLPLAAKTIGSLLRFKRTREEWES 365 (673)
Q Consensus 315 ~~~v~~~-~~~~~~~~l~~L~~~~~~----------------------------c~GlPLai~~~~~~L~~~~~~~~w~~ 365 (673)
++.|+.. |++...+++++|+.+||| |+|+|||++++|+.|+.|++.++|++
T Consensus 298 s~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~ 377 (889)
T KOG4658|consen 298 SEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRR 377 (889)
T ss_pred cHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999 888999999999999999 99999999999999999999999999
Q ss_pred HHhhhccc----chhhhhccchhhhhcccCCChhhhhhhch------------HHHHHHHHHcCCCCC-CCCCcHHHHHH
Q 005860 366 ILDSELWQ----LEEFEKGLLAPLLLSYNDLPPMIKRCFQY------------YELIKLWMAQDYIMP-EGNKELEIIGE 428 (673)
Q Consensus 366 ~l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~cfl~------------~~l~~~w~a~g~i~~-~~~~~~e~~~~ 428 (673)
+.+...+. ..+..+.++++|++||+.||+++|.||+| ..|+.+|+||||+.+ ..+.+++++|+
T Consensus 378 ~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~ 457 (889)
T KOG4658|consen 378 ALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGY 457 (889)
T ss_pred HHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchH
Confidence 99876554 23346789999999999999999999999 799999999999988 45788999999
Q ss_pred HHHHHHHhcccccccccCCCCcEeEEEeChHHHHHHHHhcc-----cceEEEEecCCCCcccccccccCceEEEEEEcCC
Q 005860 429 EYFDYLAMRSFFQEFFKDNEGVVVRCKMHDIVHDFAQFLTK-----NECIAIEVDDDEEPLSLINTYQEKLRHSMLVLGY 503 (673)
Q Consensus 429 ~~~~~L~~~sli~~~~~~~~~~~~~~~mHdlv~~~a~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~ 503 (673)
.|+.+|++++|++..... ++..+|+|||+|||+|.++++ .++.++..+.... .......+..+|++++..+.
T Consensus 458 ~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~-~~~~~~~~~~~rr~s~~~~~ 534 (889)
T KOG4658|consen 458 DYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS-EIPQVKSWNSVRRMSLMNNK 534 (889)
T ss_pred HHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcc-ccccccchhheeEEEEeccc
Confidence 999999999999876543 566799999999999999999 6664444331111 01222345678999998887
Q ss_pred CCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhccccccccccccceecC
Q 005860 504 EASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILKGIEKLIHLRYLRLVG 582 (673)
Q Consensus 504 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~~i~~L~~Lr~L~L~~ 582 (673)
....+... .+++|+||.+.++.. .+......+|..++.|+||||++ |. +.++|++|+.|.|||||+|++
T Consensus 535 ~~~~~~~~-~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~-------~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 535 IEHIAGSS-ENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSG-------NSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred hhhccCCC-CCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCC-------CCccCcCChHHhhhhhhhcccccC
Confidence 65544433 456899999988752 34566677899999999999998 55 789999999999999999999
Q ss_pred CCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCCeeEEccCC
Q 005860 583 LGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSEFVVVRGG 657 (673)
Q Consensus 583 ~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~~~~~~~~ 657 (673)
|.+..||.++++|+.|.+||+..+..+..+|..+..|.+||+|.+.......--..++.+.+|++|..+.+...+
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 999999999999999999999998878888877777999999997665432222335566666666666665444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-48 Score=466.13 Aligned_cols=481 Identities=21% Similarity=0.275 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCccccc---------CCCCcccccccccccCCcceechhhHHHHHHHhccCCcccccCC
Q 005860 126 AVKIKAINGKLDDIAKQKDMYNFNVIR---------STENSERIQSTSLIDVSEIRGRDEEKSSLKSKLLCESSEEIIND 196 (673)
Q Consensus 126 ~~~i~~~~~~l~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 196 (673)
..+++++++.|.+++.... +.+.... ..........++..+.+++|||+++++++..+|..+. ++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-----~~ 206 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-----EE 206 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-----Cc
Confidence 3578888888888875332 2221100 0011112223334456789999999999999886543 56
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc---CCc-----------cc-HHHHHHHHHHHhhCCCC-CcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV---SDP-----------FD-ELRIAKAIIEALEGFVP-TVG 260 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~ 260 (673)
+++|+||||||+||||||+++|+. +..+|++.+|+.. +.. ++ ...++.+++.++..... ...
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~ 284 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY 284 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC
Confidence 899999999999999999999995 7789999888742 111 01 12344555555433221 111
Q ss_pred cHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeecCCCCccccc-
Q 005860 261 ELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISIKELSEQECW- 339 (673)
Q Consensus 261 ~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~- 339 (673)
. ...+++.+++||+||||||||+ ..+|+.+.....+.++||+||||||++.++..++..++|+++.|++++||
T Consensus 285 ~----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~ 358 (1153)
T PLN03210 285 H----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALE 358 (1153)
T ss_pred C----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHH
Confidence 1 2457788999999999999975 46899988877788899999999999999988888899999999999998
Q ss_pred --------------------------cCCchhhHHHHhhhhccCCCHHHHHHHHhhhcccchhhhhccchhhhhcccCCC
Q 005860 340 --------------------------CKGLPLAAKTIGSLLRFKRTREEWESILDSELWQLEEFEKGLLAPLLLSYNDLP 393 (673)
Q Consensus 340 --------------------------c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 393 (673)
|+|+|||++++|+.|+.+ +..+|+.++++..+. .+.++.++|++||++|+
T Consensus 359 LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 359 MFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLN 434 (1153)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccC
Confidence 999999999999999876 689999999876543 34578999999999998
Q ss_pred h-hhhhhhch---------HHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHhcccccccccCCCCcEeEEEeChHHHHH
Q 005860 394 P-MIKRCFQY---------YELIKLWMAQDYIMPEGNKELEIIGEEYFDYLAMRSFFQEFFKDNEGVVVRCKMHDIVHDF 463 (673)
Q Consensus 394 ~-~~k~cfl~---------~~l~~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~sli~~~~~~~~~~~~~~~mHdlv~~~ 463 (673)
+ ..|.||++ .+.+..|.+.+.... +..++.|+++||++... + ++.|||++|++
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~~ 497 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE----D---IVEMHSLLQEM 497 (1153)
T ss_pred ccchhhhhheehhhcCCCCHHHHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC----C---eEEhhhHHHHH
Confidence 7 59999998 345667777665432 22388999999997632 1 68999999999
Q ss_pred HHHhcccceE------EEEecCCCCcccccccccCceEEEEEEcCCCCcc---ccccccccccchhhhccchhhh-----
Q 005860 464 AQFLTKNECI------AIEVDDDEEPLSLINTYQEKLRHSMLVLGYEASF---PISIFKAKNLRSLFINNTLIQV----- 529 (673)
Q Consensus 464 a~~i~~~e~~------~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~----- 529 (673)
|+.+++.+.. +..................+++.+++........ ...+..|++|+.|.+..+....
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 9999876531 1111000000011122334566666654433211 2234456666666554321000
Q ss_pred -h--------------------hhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCC-Ccc
Q 005860 530 -S--------------------LTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLG-TEE 587 (673)
Q Consensus 530 -~--------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i~~ 587 (673)
. ....+|..| .+.+|+.|++.+ +.+..+|..+..+++|++|+|+++. ++.
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-------SKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC-------ccccccccccccCCCCCEEECCCCCCcCc
Confidence 0 001122222 356777888877 7888888889999999999999887 888
Q ss_pred cchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccc-cccccccccCCCCCCCCcCCee
Q 005860 588 LPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDD-SCLEFIPKGIQRLTNLRTLSEF 651 (673)
Q Consensus 588 LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~-~~l~~lP~~i~~L~~L~~L~~~ 651 (673)
+|. ++.+++|++|+|++|..+..+|..+++|++|++|++++ +.+..+|.++ ++++|+.|...
T Consensus 650 ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 650 IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 885 88899999999999998999999999999999999764 5688888776 67777776543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-38 Score=323.15 Aligned_cols=238 Identities=39% Similarity=0.634 Sum_probs=195.3
Q ss_pred chhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 174 RDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
||.++++|.+.|.... ++.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++
T Consensus 1 re~~~~~l~~~L~~~~-----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998754 45899999999999999999999998778899999999999999999999999999998
Q ss_pred CCCC---CcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhccc-cceee
Q 005860 254 GFVP---TVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMES-IHVIS 329 (673)
Q Consensus 254 ~~~~---~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~ 329 (673)
.... ...+.++....+.+.|+++++||||||||+. ..|+.+...++.+..||+||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 8743 4467788999999999999999999999764 5888888888887889999999999999887665 78999
Q ss_pred cCCCCccccc----------------------------cCCchhhHHHHhhhhccCCCHHHHHHHHhhhcccch---hhh
Q 005860 330 IKELSEQECW----------------------------CKGLPLAAKTIGSLLRFKRTREEWESILDSELWQLE---EFE 378 (673)
Q Consensus 330 l~~L~~~~~~----------------------------c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~---~~~ 378 (673)
+++|+.+|++ |+|+|||++++|++|+.+.+..+|+.+++...+... +..
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998 999999999999999766678899998876554432 235
Q ss_pred hccchhhhhcccCCChhhhhhhch------------HHHHHHHHHcCCCCCC
Q 005860 379 KGLLAPLLLSYNDLPPMIKRCFQY------------YELIKLWMAQDYIMPE 418 (673)
Q Consensus 379 ~~i~~~l~~sy~~L~~~~k~cfl~------------~~l~~~w~a~g~i~~~ 418 (673)
..+..++.+||+.||++.|.||+| ..++.+|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 678999999999999999999999 7999999999999764
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-14 Score=128.00 Aligned_cols=139 Identities=27% Similarity=0.338 Sum_probs=117.2
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh--hhcccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN--KILKGI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~lp~~i 569 (673)
.++..+.+..+....+|.++.++++||.|.+.-+.. ..+|.-|+.++-|.+|||.+ +.+. .+|..+
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-----~~lprgfgs~p~levldlty-------nnl~e~~lpgnf 123 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-----NILPRGFGSFPALEVLDLTY-------NNLNENSLPGNF 123 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhhh-----hcCccccCCCchhhhhhccc-------cccccccCCcch
Confidence 445556666666677788888888888887765432 45677788999999999998 7754 489999
Q ss_pred ccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLT 643 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~ 643 (673)
..|..||.|.|+.|.++-+|+.+++|++||.|.++.+. +-++|.+++.|+.||.|++.+|.+..+|++++++.
T Consensus 124 f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 99999999999999999999999999999999999965 88999999999999999999999999999888764
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=4.9e-14 Score=123.90 Aligned_cols=145 Identities=29% Similarity=0.351 Sum_probs=95.8
Q ss_pred ceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccc
Q 005860 493 KLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKL 572 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L 572 (673)
.+.++.++.+.....|+.+..+.+|.+|.++++.. ..+|..++.++.|+.|++.- +.+..+|..+|.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgm-------nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGM-------NRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecch-------hhhhcCccccCCC
Confidence 44555566565566666666677777777766653 34555566667777777666 6666667777777
Q ss_pred cccccceecCCCC--cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCCe
Q 005860 573 IHLRYLRLVGLGT--EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSE 650 (673)
Q Consensus 573 ~~Lr~L~L~~~~i--~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~ 650 (673)
+.|..|||..|++ ..||..+..++-|+.|+|+++. ++.+|.++++|++|+.|.++.|.+-.+|.++|.|+.|+.|..
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 7777777766663 3466666666666777776643 667777777777777777777777777777777776666643
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.18 E-value=6.2e-10 Score=132.83 Aligned_cols=268 Identities=16% Similarity=0.191 Sum_probs=155.6
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcC-CcccHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVS-DPFDELRIAK 246 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~ 246 (673)
++.++-|+.-.+.+ ... ...+++.|+|++|.||||++...... ++.++|+++. .+.++..+..
T Consensus 13 ~~~~~~R~rl~~~l----~~~------~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA------NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccccCcchHHHHHH----hcc------cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 34567776555444 222 34789999999999999999888753 2368999985 4456677778
Q ss_pred HHHHHhhCCCCC-------------cCcHHHHHHHHHHHhC--CCeEEEEEcCCCCCCccchh-hhhhhccCCCCCeEEE
Q 005860 247 AIIEALEGFVPT-------------VGELNSLLESIRASLV--GKKFLLILDDMWTDDYSKWE-PFHYCLKNGVRGSKIL 310 (673)
Q Consensus 247 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~~~~~~-~l~~~l~~~~~gs~ii 310 (673)
.++..+...... ..+.......+...+. +.+++|||||+..-+..... .+...+.....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 888877532111 0122233333333332 68999999999554333333 3433344445667888
Q ss_pred EEcCChhH---HHhccccceeecC----CCCccccc----------------------cCCchhhHHHHhhhhccCCC-H
Q 005860 311 VTTRKETV---ARMMESIHVISIK----ELSEQECW----------------------CKGLPLAAKTIGSLLRFKRT-R 360 (673)
Q Consensus 311 vTtr~~~v---~~~~~~~~~~~l~----~L~~~~~~----------------------c~GlPLai~~~~~~L~~~~~-~ 360 (673)
||||...- ...........+. +|+.+|+. |+|.|+++..++..++.... .
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 99997421 1111112233444 67777764 99999999998877754321 1
Q ss_pred HHHHHHHhhhcccchh-hhhccchhhh-hcccCCChhhhhhhchHHHHH---HHHHcCCCCCCCCCcHHHHHHHHHHHHH
Q 005860 361 EEWESILDSELWQLEE-FEKGLLAPLL-LSYNDLPPMIKRCFQYYELIK---LWMAQDYIMPEGNKELEIIGEEYFDYLA 435 (673)
Q Consensus 361 ~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~cfl~~~l~~---~w~a~g~i~~~~~~~~e~~~~~~~~~L~ 435 (673)
... .. .+.. ....+...+. -.++.||++.+..++...+.. ...+..+.. .+.+...+++|.
T Consensus 237 ~~~---~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~-------~~~~~~~L~~l~ 302 (903)
T PRK04841 237 HDS---AR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTG-------EENGQMRLEELE 302 (903)
T ss_pred hhh---hH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcC-------CCcHHHHHHHHH
Confidence 111 11 1100 0112333332 347799999988876633321 111211111 112356789999
Q ss_pred hcccccccccCCCCcEeEEEeChHHHHHHHHhc
Q 005860 436 MRSFFQEFFKDNEGVVVRCKMHDIVHDFAQFLT 468 (673)
Q Consensus 436 ~~sli~~~~~~~~~~~~~~~mHdlv~~~a~~i~ 468 (673)
..+++..... ..+ ..|++|++++++.+...
T Consensus 303 ~~~l~~~~~~-~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 303 RQGLFIQRMD-DSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred HCCCeeEeec-CCC--CEEehhHHHHHHHHHHH
Confidence 9998743211 112 25778999999987654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.10 E-value=6.3e-11 Score=142.21 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=99.2
Q ss_pred cCceEEEEEEcCCCC-ccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhccc
Q 005860 491 QEKLRHSMLVLGYEA-SFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKG 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~-~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~ 568 (673)
..+++.+.+..+... ..|..+..+++|++|++.++.. ...+|..+.++++|++|++++ |.+. .+|..
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~-------n~l~~~~p~~ 207 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL----VGKIPNSLTNLTSLEFLTLAS-------NQLVGQIPRE 207 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc----cccCChhhhhCcCCCeeeccC-------CCCcCcCChH
Confidence 345666666665543 3455566677777777776652 234455666777777777777 6643 46777
Q ss_pred cccccccccceecCCCC-cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc-cccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGT-EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE-FIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i-~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~L~~L~ 646 (673)
++++.+|++|+|++|.+ ..+|..++++++|++|++++|.....+|..++++++|++|+++.|.+. .+|..++++++|+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 77777777777777774 367777777777777777776644467777777777777777777664 4666677777666
Q ss_pred cCCe
Q 005860 647 TLSE 650 (673)
Q Consensus 647 ~L~~ 650 (673)
.|..
T Consensus 288 ~L~L 291 (968)
T PLN00113 288 SLDL 291 (968)
T ss_pred EEEC
Confidence 6543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.09 E-value=7.1e-12 Score=130.69 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=96.3
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
..++.|+++..+........+..++.||++++..|... ...+|.-+-.++.|.+|||+. +++.+.|..+.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLSh-------NqL~EvP~~LE 123 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSH-------NQLREVPTNLE 123 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchhcccccceeeecch-------hhhhhcchhhh
Confidence 45677888877777666667777888888888776631 122333344778888888888 88888888887
Q ss_pred cccccccceecCCCCcccchhhh-cCCCccEEEeccCCCCccccccccccccCCeeeccccccc
Q 005860 571 KLIHLRYLRLVGLGTEELPETCC-ELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~-~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~ 633 (673)
.-+++-.|+|+.|+|..+|.+++ +|+-|-+||||++. ++.+|..+.+|.+|+.|.+++|.+.
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh
Confidence 77778888888888888885543 67777788888754 7888888888888888887777643
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.08 E-value=8.4e-11 Score=141.13 Aligned_cols=171 Identities=23% Similarity=0.168 Sum_probs=135.8
Q ss_pred cCceEEEEEEcCCC-CccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhccc
Q 005860 491 QEKLRHSMLVLGYE-ASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKG 568 (673)
Q Consensus 491 ~~~~r~l~l~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~ 568 (673)
..+++.+.+..+.. ...|..+.++++|++|.+.++.. ...+|..+.++++|+.|++++ +.+. .+|..
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~L~~-------n~l~~~~p~~ 231 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL----VGQIPRELGQMKSLKWIYLGY-------NNLSGEIPYE 231 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC----cCcCChHHcCcCCccEEECcC-------CccCCcCChh
Confidence 46789999988765 35677788999999999998863 344677788999999999999 8755 68889
Q ss_pred cccccccccceecCCCC-cccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc-cccccCCCCCCCC
Q 005860 569 IEKLIHLRYLRLVGLGT-EELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE-FIPKGIQRLTNLR 646 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i-~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~-~lP~~i~~L~~L~ 646 (673)
++.+++|++|+|++|.+ ..+|.+++++++|++|++++|.....+|..++++++|++|+++.|.+. .+|..++++++|+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 99999999999999995 578999999999999999998745678999999999999999988876 5777788888888
Q ss_pred cCCeeEEcc--CCccCCCccccCCCCCC
Q 005860 647 TLSEFVVVR--GGSKYGGKACNLEGLRY 672 (673)
Q Consensus 647 ~L~~~~~~~--~~~~~~~~~~~l~~L~~ 672 (673)
.|......- ..+..+..+.+|+.|.+
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 876543221 11122344556665544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.03 E-value=2.9e-11 Score=120.23 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=123.5
Q ss_pred eEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccccc
Q 005860 494 LRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLI 573 (673)
Q Consensus 494 ~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~ 573 (673)
+..+.+..+.....|..+..++.+.|..+..+. ...++|..++.+++|..|+|++ +.+..+|..++.+.
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn----~isfv~~~l~~l~kLt~L~L~N-------N~Ln~LP~e~~~lv 458 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNN----KISFVPLELSQLQKLTFLDLSN-------NLLNDLPEEMGSLV 458 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcC----ccccchHHHHhhhcceeeeccc-------chhhhcchhhhhhh
Confidence 556667777777788877777777776655443 2356778889999999999999 99999999999999
Q ss_pred ccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccccc-ccccccCCeeeccccccccccccCCCCCCCCcCCee
Q 005860 574 HLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSEF 651 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~~ 651 (673)
.||.|+++.|.+..+|..+..++-|+++-.+++. +.++|.+ +.+|.+|..||+..|.+..+|+++|++++|++|...
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEec
Confidence 9999999999999999988888889998888755 8888765 999999999999999999999999999999988543
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.03 E-value=2.2e-11 Score=127.06 Aligned_cols=146 Identities=27% Similarity=0.308 Sum_probs=111.3
Q ss_pred EEEEcCCCCccccccccccccchhhhccchhhh---------------------hhhhhHHHHhhhCCccceeeeccccc
Q 005860 497 SMLVLGYEASFPISIFKAKNLRSLFINNTLIQV---------------------SLTHVLQSLFDQLKCLRALRIATLMN 555 (673)
Q Consensus 497 l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~---------------------~~~~~~~~~~~~l~~L~~L~L~~~~~ 555 (673)
+.++.+....+|+.+..+.+|++|.+++|.... .....+|..+..+.+|+-+|++.
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~--- 231 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE--- 231 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc---
Confidence 344444445566666666666666666654210 01123455567777788888888
Q ss_pred cccccchhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccc--
Q 005860 556 TWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLE-- 633 (673)
Q Consensus 556 ~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~-- 633 (673)
+.+..+|+.+-++.+|+-|+|++|.|++|--.++...+|++|++|.+. +..+|+.+.+|++|+.|.+..|.+.
T Consensus 232 ----N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 232 ----NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred ----cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCccccc
Confidence 888888888888999999999999999998888888999999999865 9999999999999999998888754
Q ss_pred cccccCCCCCCCCcCCe
Q 005860 634 FIPKGIQRLTNLRTLSE 650 (673)
Q Consensus 634 ~lP~~i~~L~~L~~L~~ 650 (673)
.+|++||+|..|..+..
T Consensus 307 GiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CCccchhhhhhhHHHHh
Confidence 79999999998887743
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=3.7e-08 Score=99.82 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=82.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHH----HH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIR----AS 272 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~ 272 (673)
..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..|...++..... .+.......+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999863321 11 22333 333457778999999888765432 22222233333 32
Q ss_pred -hCCCeEEEEEcCCCCCCccchhhhhhhccC---CCCCeEEEEEcCChhHHHhcc----------ccceeecCCCCcccc
Q 005860 273 -LVGKKFLLILDDMWTDDYSKWEPFHYCLKN---GVRGSKILVTTRKETVARMME----------SIHVISIKELSEQEC 338 (673)
Q Consensus 273 -l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~~----------~~~~~~l~~L~~~~~ 338 (673)
..+++++||+||+|.-+...++.+...... ......|++|... .....+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 367889999999987665566665533221 1222344555543 2222211 134567888887775
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.88 E-value=1.7e-10 Score=114.96 Aligned_cols=134 Identities=22% Similarity=0.342 Sum_probs=99.1
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
.+.+.|+....+....+|+.+..+..|.-|++..+.. .++| .|.++..|..|++.. ++++.+|..++
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-----~~lP-ef~gcs~L~Elh~g~-------N~i~~lpae~~ 248 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI-----RFLP-EFPGCSLLKELHVGE-------NQIEMLPAEHL 248 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc-----ccCC-CCCccHHHHHHHhcc-------cHHHhhHHHHh
Confidence 3455666666666677777777777777777777653 3344 466777777777777 77888887776
Q ss_pred -cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccC
Q 005860 571 -KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 571 -~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i 639 (673)
+|.+|..|||+.|.++++|..+|.|.+|++||+|++. +..+|-++|+| .|+.|-+.+|.++.+-.+|
T Consensus 249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred cccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 7788888888888888888888888888888888754 88888888888 7888888888777665443
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.87 E-value=2.1e-08 Score=107.66 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=106.2
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
.|+.++||++++++|...|...-. ......+.|+|++|+|||++++.++++.......-..+++.+....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~---~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR---GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 456899999999999998844321 12234578999999999999999998632222123466777776677888999
Q ss_pred HHHHHhhCCC-C-CcCcHHHHHHHHHHHhC--CCeEEEEEcCCCCCC----ccchhhhhhhccCCCCCeE--EEEEcCCh
Q 005860 247 AIIEALEGFV-P-TVGELNSLLESIRASLV--GKKFLLILDDMWTDD----YSKWEPFHYCLKNGVRGSK--ILVTTRKE 316 (673)
Q Consensus 247 ~i~~~l~~~~-~-~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~ 316 (673)
.|++++.... + ...+.++....+.+.+. +++.+||||+++.-. ...+..+...+.. ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 9999997632 2 22345666777777765 467899999995421 1122222222211 23333 56666654
Q ss_pred hHHHhccc-------cceeecCCCCccccc
Q 005860 317 TVARMMES-------IHVISIKELSEQECW 339 (673)
Q Consensus 317 ~v~~~~~~-------~~~~~l~~L~~~~~~ 339 (673)
.+...... ...+.+++++.++..
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~ 213 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIF 213 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHH
Confidence 43332211 235677777776643
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.83 E-value=3.3e-09 Score=128.17 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=69.5
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc-hhhhcccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS-TNKILKGI 569 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~lp~~i 569 (673)
+.++|.+.+..+....+|..+ .+.+|+.|.+.++.. ..++..+..+++|+.|+|++ +. +..+| .+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l-----~~L~~~~~~l~~Lk~L~Ls~-------~~~l~~ip-~l 653 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL-----EKLWDGVHSLTGLRNIDLRG-------SKNLKEIP-DL 653 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc-----cccccccccCCCCCEEECCC-------CCCcCcCC-cc
Confidence 456777777766666666554 456777777766542 12233345566666666665 33 33343 35
Q ss_pred ccccccccceecCCC-CcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeec
Q 005860 570 EKLIHLRYLRLVGLG-TEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTY 627 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~-i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l 627 (673)
+.+++|++|+|++|. +..+|.++++|++|+.|++++|+++..+|..+ ++++|++|++
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 555666666666655 55566666666666666666665566665544 4444444443
No 16
>PF05729 NACHT: NACHT domain
Probab=98.83 E-value=1.1e-08 Score=95.31 Aligned_cols=134 Identities=20% Similarity=0.283 Sum_probs=78.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcccccc----CCeEEEEEcCCcccHH---HHHHHHHHHhhCCCCCcCcHHHHHHHHH
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEY----FDKRMWVCVSDPFDEL---RIAKAIIEALEGFVPTVGELNSLLESIR 270 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 270 (673)
+++.|+|.+|+||||+++.++........ +...+|+......... .+...|......... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 57899999999999999998876332222 4456677665543332 333333333322211 1111 122
Q ss_pred H-HhCCCeEEEEEcCCCCCCc--c-----chhhhh-hhccC-CCCCeEEEEEcCChhH---HHhccccceeecCCCCccc
Q 005860 271 A-SLVGKKFLLILDDMWTDDY--S-----KWEPFH-YCLKN-GVRGSKILVTTRKETV---ARMMESIHVISIKELSEQE 337 (673)
Q Consensus 271 ~-~l~~kr~LlVLDdvw~~~~--~-----~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~ 337 (673)
. .-+.++++||||++.+-.. . .+..+. ..+.. ..++.++|||||.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 2257899999999832111 0 122222 22222 3568999999998765 3334445678999998765
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=6.5e-10 Score=115.55 Aligned_cols=130 Identities=21% Similarity=0.306 Sum_probs=84.1
Q ss_pred CccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCC
Q 005860 505 ASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLG 584 (673)
Q Consensus 505 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~ 584 (673)
..+|..+.++..|..|+++.+.. ..+|..+..++ |++|-+++ +.+..+|+.|+.+.+|..|+.+.|.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~Nql-----S~lp~~lC~lp-Lkvli~sN-------Nkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQL-----SHLPDGLCDLP-LKVLIVSN-------NKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred eecchhhhhhhHHHHhhhccchh-----hcCChhhhcCc-ceeEEEec-------CccccCCcccccchhHHHhhhhhhh
Confidence 34455566666666666666543 22333333333 67777777 6677777777766777777777777
Q ss_pred CcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 585 TEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 585 i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
+..+|+.+++|..|+.|+++.++ +..+|.+++.|+ |..||++||++..+|-.|.+|+.||+|.
T Consensus 178 i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeee
Confidence 77777777777777777777644 667776666543 6667777777777776677777776653
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.76 E-value=9e-08 Score=101.59 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc-ccC---CeEEEEEcCCcccHH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF-EYF---DKRMWVCVSDPFDEL 242 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~ 242 (673)
.|+.++||++++++|...|...-. ......+.|+|++|+|||++++.+++...-. ... -..+|+.+....+..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 345899999999999999864211 1224568999999999999999999852110 111 135677777766788
Q ss_pred HHHHHHHHHhh---CCCC-CcCcHHHHHHHHHHHh--CCCeEEEEEcCCCC
Q 005860 243 RIAKAIIEALE---GFVP-TVGELNSLLESIRASL--VGKKFLLILDDMWT 287 (673)
Q Consensus 243 ~~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~ 287 (673)
.++..|++++. ...+ ...+.++....+.+.+ .+++++||||++..
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 89999999994 2211 1223445555566655 35689999999944
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.73 E-value=1e-08 Score=101.33 Aligned_cols=43 Identities=35% Similarity=0.387 Sum_probs=35.3
Q ss_pred ceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 171 IRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~-------~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP-------SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc-------CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 7899999999999886543 467899999999999999999985
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.69 E-value=1e-06 Score=96.98 Aligned_cols=279 Identities=21% Similarity=0.250 Sum_probs=156.8
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC-cccHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD-PFDELRIAK 246 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~ 246 (673)
+...|-|..-.+. |... .+.+.+.|..++|.|||||+-..... ...=..+.|.+..+ +.++..+..
T Consensus 18 ~~~~v~R~rL~~~----L~~~------~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 18 PDNYVVRPRLLDR----LRRA------NDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cccccccHHHHHH----HhcC------CCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHH
Confidence 4456666654444 4333 35899999999999999999888651 12234689998765 457888999
Q ss_pred HHHHHhhCCCCCc-------------CcHHHHHHHHHHHhC--CCeEEEEEcCCCCCCccchh-hhhhhccCCCCCeEEE
Q 005860 247 AIIEALEGFVPTV-------------GELNSLLESIRASLV--GKKFLLILDDMWTDDYSKWE-PFHYCLKNGVRGSKIL 310 (673)
Q Consensus 247 ~i~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~kr~LlVLDdvw~~~~~~~~-~l~~~l~~~~~gs~ii 310 (673)
.++..++.-.++. .+...+...+...+. .++..+||||-.-......+ .+...+.....+-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 9999987543322 223334444554443 46899999997543333343 3555556677788999
Q ss_pred EEcCChhHHHh---ccccceeecC----CCCccccc----cC-CchhhHHHHhhhhccCCCHHHHHHHHhhhcc--c---
Q 005860 311 VTTRKETVARM---MESIHVISIK----ELSEQECW----CK-GLPLAAKTIGSLLRFKRTREEWESILDSELW--Q--- 373 (673)
Q Consensus 311 vTtr~~~v~~~---~~~~~~~~l~----~L~~~~~~----c~-GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~--~--- 373 (673)
||||+.--... --....++++ .++.+|+- |. |+|+--..+..+.. ..+-|-..+.-..- .
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~---~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYD---RTEGWAAALQLIALALRNNT 241 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHh---hcccHHHHHHHHHHHccCCC
Confidence 99998632211 0011122222 24445543 33 36665555544442 23445444321100 0
Q ss_pred --------chhhhhccchh-hhhcccCCChhhhhhhchHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHhcccccccc
Q 005860 374 --------LEEFEKGLLAP-LLLSYNDLPPMIKRCFQYYELIKLWMAQDYIMPEGNKELEIIGEEYFDYLAMRSFFQEFF 444 (673)
Q Consensus 374 --------~~~~~~~i~~~-l~~sy~~L~~~~k~cfl~~~l~~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~sli~~~~ 444 (673)
+....+.+..- ..--++.||+++|..++-.......-++ ++..- +-++-+...+++|.+++||-..-
T Consensus 242 ~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~e-L~~~L---tg~~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 242 SAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDE-LCNAL---TGEENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred cHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHH-HHHHH---hcCCcHHHHHHHHHhCCCceeee
Confidence 00001111111 2235678899988866653333332221 11110 11223456789999999875432
Q ss_pred cCCCCcEeEEEeChHHHHHHHHhcc
Q 005860 445 KDNEGVVVRCKMHDIVHDFAQFLTK 469 (673)
Q Consensus 445 ~~~~~~~~~~~mHdlv~~~a~~i~~ 469 (673)
.+. ..-|+.|.++.||.+.-..
T Consensus 318 dd~---~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 318 DDE---GQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred cCC---CceeehhHHHHHHHHhhhc
Confidence 222 2268999999999876544
No 21
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=5.8e-08 Score=86.56 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=80.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccc---ccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVF---EYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
-+++.|+|.+|+|||++++.+.++.... ..-..++|+.++...+...+...|+++++.......+.+++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999852110 0034567999988889999999999999988666566677778888877
Q ss_pred CCC-eEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCC
Q 005860 274 VGK-KFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRK 315 (673)
Q Consensus 274 ~~k-r~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 315 (673)
... ..+||+|++..- +...++.+..... ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 654 459999999443 3333444433322 567777777654
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=2.3e-08 Score=92.35 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=58.9
Q ss_pred cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchhh
Q 005860 513 KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETC 592 (673)
Q Consensus 513 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i 592 (673)
+..+++.|.+.++.+ ..+...-..+..|++|++++ |.+..+. .+..|++|+.|++++|.|+.+++.+
T Consensus 17 n~~~~~~L~L~~n~I-----~~Ie~L~~~l~~L~~L~Ls~-------N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI-----STIENLGATLDKLEVLDLSN-------NQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TT-------S--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccc-----ccccchhhhhcCCCEEECCC-------CCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 455788999988874 11222212567899999999 9988875 5888999999999999999998766
Q ss_pred h-cCCCccEEEeccCCCCccccc--cccccccCCeeeccccccccccc----cCCCCCCCCcCCeeEEccCC
Q 005860 593 C-ELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCLEFIPK----GIQRLTNLRTLSEFVVVRGG 657 (673)
Q Consensus 593 ~-~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l~~lP~----~i~~L~~L~~L~~~~~~~~~ 657 (673)
. .+++|+.|+++++. +..+-+ .+..+++|++|++.+|++...+. -|..+++|+.|++-.|....
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHH
Confidence 4 69999999999865 666542 46788999999999998876542 35779999999999987654
No 23
>PTZ00202 tuzin; Provisional
Probab=98.53 E-value=1.2e-06 Score=90.12 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=73.9
Q ss_pred ccccccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH
Q 005860 162 STSLIDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE 241 (673)
Q Consensus 162 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (673)
...+.+.+.|+||+.+..++...|...+. ...+++.|+|++|+|||||++.+..... + . .++.-+. +.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~----~~privvLtG~~G~GKTTLlR~~~~~l~----~-~-qL~vNpr--g~ 322 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT----AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-P-AVFVDVR--GT 322 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC----CCceEEEEECCCCCCHHHHHHHHHhcCC----c-e-EEEECCC--CH
Confidence 34556678999999999999999865442 2356999999999999999999987532 1 2 3332233 67
Q ss_pred HHHHHHHHHHhhCCCCCc-C-cHHHHHHHHHHHh-C-CCeEEEEEc
Q 005860 242 LRIAKAIIEALEGFVPTV-G-ELNSLLESIRASL-V-GKKFLLILD 283 (673)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~-~-~~~~~~~~l~~~l-~-~kr~LlVLD 283 (673)
.++++.|+.+|+.+.... . -.+.+.+.+.+.- . +++.+||+-
T Consensus 323 eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 323 EDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999742211 1 1233333333322 3 677777765
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=2.6e-08 Score=114.71 Aligned_cols=103 Identities=29% Similarity=0.329 Sum_probs=84.7
Q ss_pred ccceeeeccccccccccc--hhhhcc-ccccccccccceecCCC-CcccchhhhcCCCccEEEeccCCCCcccccccccc
Q 005860 544 CLRALRIATLMNTWDVNS--TNKILK-GIEKLIHLRYLRLVGLG-TEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKL 619 (673)
Q Consensus 544 ~L~~L~L~~~~~~~~~~~--~~~lp~-~i~~L~~Lr~L~L~~~~-i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L 619 (673)
.|+.|-+.+ +. +..++. .+..|++|++|||++|. +.+||++|++|.+|++|+++++. +..+|.++++|
T Consensus 546 ~L~tLll~~-------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~L 617 (889)
T KOG4658|consen 546 KLRTLLLQR-------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNL 617 (889)
T ss_pred ccceEEEee-------cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHH
Confidence 577777777 54 444444 37779999999999988 99999999999999999999977 99999999999
Q ss_pred ccCCeeecccccccccccc-CCCCCCCCcCCeeEEc
Q 005860 620 VNLRHLTYDDSCLEFIPKG-IQRLTNLRTLSEFVVV 654 (673)
Q Consensus 620 ~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~~~~~~ 654 (673)
++|.||++..+.-...+++ +..|++|++|..+...
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999876654333344 4559999999888776
No 25
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=3.3e-07 Score=81.24 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=78.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
+++.|.|+.|+|||||+++++++.. ....++|++..+......... + ....+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999887522 335677887665433211000 0 2333444444478
Q ss_pred EEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhc------cccceeecCCCCcccc
Q 005860 278 FLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMM------ESIHVISIKELSEQEC 338 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~~ 338 (673)
.+|+||++. ....|......+.+..+..+|++|+.+......- +-...++|.||+-.|.
T Consensus 63 ~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999994 3456777666666655667999999877665331 2245678888886653
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.53 E-value=6e-07 Score=81.42 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=72.8
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHH
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEA 251 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 251 (673)
.|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~-------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELPP-------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh
Confidence 478888888888875432 46788999999999999999999632 222346666655433322211111000
Q ss_pred hhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCC------CCCeEEEEEcCChh
Q 005860 252 LEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNG------VRGSKILVTTRKET 317 (673)
Q Consensus 252 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 317 (673)
............++.+||+||++.-.......+...+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011122233456789999999643122222333333322 36778888888643
No 27
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.52 E-value=1.5e-07 Score=92.67 Aligned_cols=88 Identities=20% Similarity=0.112 Sum_probs=62.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc--ccHHHHHHHHHHHhhCCCCCcCc---H---HHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP--FDELRIAKAIIEALEGFVPTVGE---L---NSLLES 268 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~---~---~~~~~~ 268 (673)
-..++|+|++|+|||||++.++++.... +|+.++|+.+++. .++.++++.+...+-....+... . ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999985544 8999999997776 78999999984333222111111 1 122222
Q ss_pred HHHH-hCCCeEEEEEcCC
Q 005860 269 IRAS-LVGKKFLLILDDM 285 (673)
Q Consensus 269 l~~~-l~~kr~LlVLDdv 285 (673)
.... -.++++++++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 2222 3589999999999
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.52 E-value=1.8e-08 Score=105.17 Aligned_cols=147 Identities=21% Similarity=0.268 Sum_probs=87.2
Q ss_pred CceEEEEEEcCCCCcc-ccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-cc
Q 005860 492 EKLRHSMLVLGYEASF-PISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GI 569 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i 569 (673)
+++.++.+..+..... ..+++.+..|+.|++++|.+ ..+-.+.++..+.|..|+|+. +.++.+++ ++
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI----~rih~d~WsftqkL~~LdLs~-------N~i~~l~~~sf 337 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI----QRIHIDSWSFTQKLKELDLSS-------NRITRLDEGSF 337 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhh----heeecchhhhcccceeEeccc-------cccccCChhHH
Confidence 4555666655544332 23456677777777777652 233344556666777777777 77666644 56
Q ss_pred ccccccccceecCCCCcccch-hhhcCCCccEEEeccCCC---CccccccccccccCCeeecccccccccccc-CCCCCC
Q 005860 570 EKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTS---LKRLPLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTN 644 (673)
Q Consensus 570 ~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~---l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~ 644 (673)
..|..|..|+|+.|.+..+-+ .+..+.+|++|||+.+.- ++.--..+..|++|+.|.+.+|.++.+|.. +..|.+
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 666677777777777666643 455566777777765431 122222345566677777777777666643 555666
Q ss_pred CCcCC
Q 005860 645 LRTLS 649 (673)
Q Consensus 645 L~~L~ 649 (673)
|+.|+
T Consensus 418 LE~Ld 422 (873)
T KOG4194|consen 418 LEHLD 422 (873)
T ss_pred cceec
Confidence 66554
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-08 Score=111.79 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=94.7
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhh------------------hhhhHHHHhhhCCccceeeecc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVS------------------LTHVLQSLFDQLKCLRALRIAT 552 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~------------------~~~~~~~~~~~l~~L~~L~L~~ 552 (673)
+.++..+.+..+....+|.++..+.+|..+....+.+..- -...+|.+..++++|++|+|..
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4567777777777667777777777777777666543100 0123445566788888888877
Q ss_pred ccccccccchhhhccc--------------------------------------------------cccccccccceecC
Q 005860 553 LMNTWDVNSTNKILKG--------------------------------------------------IEKLIHLRYLRLVG 582 (673)
Q Consensus 553 ~~~~~~~~~~~~lp~~--------------------------------------------------i~~L~~Lr~L~L~~ 582 (673)
+.+..+|+. +...+||+.|+|+.
T Consensus 320 -------N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 320 -------NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred -------ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 333333321 23456777777777
Q ss_pred CCCcccc-hhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcC
Q 005860 583 LGTEELP-ETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTL 648 (673)
Q Consensus 583 ~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L 648 (673)
|.+..+| ..+.+|..|+.|+|||+. +..+|..+.++..|++|...+|.+..+| .+..++.|+++
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVL 457 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEE
Confidence 7777777 345667777777777754 7777777777777777777777777776 45555544443
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=7.6e-08 Score=100.66 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=99.6
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcc-ccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILK-GIE 570 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~-~i~ 570 (673)
.++..+++..+....+|.......+|..|++.+|.+ .......+.-++.||+|||+. +.+.++|. ++.
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I----~sv~se~L~~l~alrslDLSr-------N~is~i~~~sfp 170 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI----SSVTSEELSALPALRSLDLSR-------NLISEIPKPSFP 170 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccc----ccccHHHHHhHhhhhhhhhhh-------chhhcccCCCCC
Confidence 456666666666666665444556677777777653 233344566677888888888 77777764 455
Q ss_pred cccccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCccccc-cccccccCCeeecccccccccc-ccCCCCCCCCc
Q 005860 571 KLIHLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSCLEFIP-KGIQRLTNLRT 647 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~l~~lP-~~i~~L~~L~~ 647 (673)
.=.++++|+|++|.|+.+- ..+..|.+|-+|.|+.+. +..+|. .|.+|++|+.|++..|.++.+- ..|..|.+||.
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 5567888888888887775 567778888888888765 888885 4566888888888877766541 22455666665
Q ss_pred C
Q 005860 648 L 648 (673)
Q Consensus 648 L 648 (673)
|
T Consensus 250 l 250 (873)
T KOG4194|consen 250 L 250 (873)
T ss_pred h
Confidence 5
No 31
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=3.3e-07 Score=87.02 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=32.7
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCc
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 221 (673)
.|+||+++++++...|.... ....+.+.|+|.+|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~----~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ----SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS----S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995222 2456899999999999999999988863
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.42 E-value=1.8e-06 Score=89.93 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=80.6
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
-.+|+|++..++.+..++...... ......+.|+|++|+||||||+.+.+... ..+ .++..+ .......+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~--~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR--GEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc--CCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHH
Confidence 357999999999998877532110 12356788999999999999999999632 221 122211 1111222333
Q ss_pred HHHHhhCCC----CCcCcH-HHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhc
Q 005860 248 IIEALEGFV----PTVGEL-NSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMM 322 (673)
Q Consensus 248 i~~~l~~~~----~~~~~~-~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 322 (673)
++..+.... ++.+.+ ....+.+...+.+.+..+|+|+..+. ..+. ..+ .+.+-|..||+...+....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~--~~~~---~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA--RSIR---LDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc--ccee---ecC---CCceEEeecCCcccCCHHH
Confidence 333332211 000100 11223344455555666666655221 1111 011 1245566677754333221
Q ss_pred cc--cceeecCCCCccccc
Q 005860 323 ES--IHVISIKELSEQECW 339 (673)
Q Consensus 323 ~~--~~~~~l~~L~~~~~~ 339 (673)
.. ...+++++++.++..
T Consensus 168 ~sRf~~~~~l~~~~~~e~~ 186 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELE 186 (328)
T ss_pred HHhcCeeeecCCCCHHHHH
Confidence 11 346788888888764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=2.3e-08 Score=104.28 Aligned_cols=141 Identities=22% Similarity=0.326 Sum_probs=103.9
Q ss_pred EEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccc
Q 005860 499 LVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYL 578 (673)
Q Consensus 499 l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L 578 (673)
+..+....+|..++.+ -|+.|++.++.. ..+|.-+..+..|..||.+. |.+..+|+.++.|..|+-|
T Consensus 128 ls~NqlS~lp~~lC~l-pLkvli~sNNkl-----~~lp~~ig~~~tl~~ld~s~-------nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 128 LSSNQLSHLPDGLCDL-PLKVLIVSNNKL-----TSLPEEIGLLPTLAHLDVSK-------NEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hccchhhcCChhhhcC-cceeEEEecCcc-----ccCCcccccchhHHHhhhhh-------hhhhhchHHhhhHHHHHHH
Confidence 3333334445555443 377787777753 33444455777888888888 8888899999999999999
Q ss_pred eecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCCeeEEc
Q 005860 579 RLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSEFVVV 654 (673)
Q Consensus 579 ~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~~~~~ 654 (673)
+++.|.+..+|+.++.|+ |..||++ |+++..+|-.|.+|+.|++|.+.+|.+..-|..|.....+..+.+....
T Consensus 195 ~vrRn~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSLP-LIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred HHhhhhhhhCCHHHhCCc-eeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 999988889998888665 8889998 4568999999999999999999998888877666555555555554443
No 34
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.40 E-value=4.7e-07 Score=92.77 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=60.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc--cHHHHHHHHHHHhhCCCCCcCcH------HHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF--DELRIAKAIIEALEGFVPTVGEL------NSLLES 268 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 268 (673)
-...+|+|++|+||||||+.||++.... +|+.++||.+++.. ++.++++.|...+-....+.... ......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999975443 89999999999887 77778877763322222111111 111111
Q ss_pred HHHH-hCCCeEEEEEcCC
Q 005860 269 IRAS-LVGKKFLLILDDM 285 (673)
Q Consensus 269 l~~~-l~~kr~LlVLDdv 285 (673)
.+.. -.+++++|++|++
T Consensus 248 Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHcCCCEEEEEECh
Confidence 2221 3689999999999
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.40 E-value=8.1e-07 Score=89.83 Aligned_cols=133 Identities=21% Similarity=0.340 Sum_probs=81.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|-+..+.++++ . ..+.-.-.||++|+||||||+.+... ....| ..+|-..+-.+-++++
T Consensus 30 ~HLlg~~~~lrr~v~---~-------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 30 EHLLGEGKPLRRAVE---A-------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred HhhhCCCchHHHHHh---c-------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 344555555555443 2 34666789999999999999999985 33444 3333322222222222
Q ss_pred HHHhhCCCCCcCcHHHHHHHH-HHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEE--EcCChhH---HHhc
Q 005860 249 IEALEGFVPTVGELNSLLESI-RASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILV--TTRKETV---ARMM 322 (673)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~ 322 (673)
+ +.- +....+++.+|++|.|..-+..+-+.+. +.-.+|.-|+| ||-+... ....
T Consensus 93 ~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 I-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred H-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 2 222 2334589999999999776666666553 44456777776 5555431 1222
Q ss_pred cccceeecCCCCcccc
Q 005860 323 ESIHVISIKELSEQEC 338 (673)
Q Consensus 323 ~~~~~~~l~~L~~~~~ 338 (673)
.-..+|.+++|+.++-
T Consensus 153 SR~~vf~lk~L~~~di 168 (436)
T COG2256 153 SRARVFELKPLSSEDI 168 (436)
T ss_pred hhhheeeeecCCHHHH
Confidence 3468899999998873
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.39 E-value=2.2e-07 Score=105.50 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=66.4
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEK 571 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~ 571 (673)
+.++.+.+..+....+|..+. ++|++|.+.+|.+ .. +|..+ ...|+.|+|++ |.+..+|..+.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L----ts-LP~~l--~~~L~~L~Ls~-------N~L~~LP~~l~- 261 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL----TS-IPATL--PDTIQEMELSI-------NRITELPERLP- 261 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc----cc-CChhh--hccccEEECcC-------CccCcCChhHh-
Confidence 456666666666655555433 4677777766653 11 22211 13566666666 66666665553
Q ss_pred ccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeecccccccccc
Q 005860 572 LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
.+|++|+|++|.+..+|..+. .+|++|++++|+ +..+|..+. .+|++|++++|.+..+|
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALP 320 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCC
Confidence 356666666666666665543 366666666654 555554332 23444444444444444
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.36 E-value=1.4e-06 Score=85.62 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=70.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
.+.+.|+|++|+|||+||+++++. .......+.|++++.. ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999986 3333445677766421 00000 1111222 2
Q ss_pred eEEEEEcCCCCCC-ccchhh-hhhhccCC-CCCeEEEEE-cCC---------hhHHHhccccceeecCCCCccccc
Q 005860 277 KFLLILDDMWTDD-YSKWEP-FHYCLKNG-VRGSKILVT-TRK---------ETVARMMESIHVISIKELSEQECW 339 (673)
Q Consensus 277 r~LlVLDdvw~~~-~~~~~~-l~~~l~~~-~~gs~iivT-tr~---------~~v~~~~~~~~~~~l~~L~~~~~~ 339 (673)
.-+|||||+|... ...|+. +...+... ..|+.+||+ +.. ..+...+.....++++++++++.+
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 3489999998642 234553 33333322 345566554 443 355666666778899999988866
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.36 E-value=6.8e-06 Score=84.85 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=82.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+|+|+++.++.|..++...... ......+.++|++|+|||+||+.+.+... ..| ..+..+...... .+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~--~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~-~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR--QEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPG-DLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCch-hHHHH
Confidence 47999999999999888532210 12345678999999999999999998532 222 122211111111 22223
Q ss_pred HHHhhCCC----CCcCcH-HHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhcc
Q 005860 249 IEALEGFV----PTVGEL-NSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMME 323 (673)
Q Consensus 249 ~~~l~~~~----~~~~~~-~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 323 (673)
+..+.... ++.+.+ ......+...+.+.+..+|+++.++. ..+.. .+ .+.+-|..||+...+....-
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~~---~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVRL---DL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cceee---cC---CCeEEEEecCCccccCHHHH
Confidence 33332211 000100 12234455566666677777766332 22221 11 12455666777644333211
Q ss_pred --ccceeecCCCCccccc
Q 005860 324 --SIHVISIKELSEQECW 339 (673)
Q Consensus 324 --~~~~~~l~~L~~~~~~ 339 (673)
....+++++++.++..
T Consensus 148 sR~~~~~~l~~l~~~e~~ 165 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELA 165 (305)
T ss_pred hhcceEEEeCCCCHHHHH
Confidence 1345788888887764
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=4.6e-07 Score=83.84 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=40.9
Q ss_pred hhCCccceeeeccccccccccchhhhccccc-cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccc-c
Q 005860 540 DQLKCLRALRIATLMNTWDVNSTNKILKGIE-KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGI-G 617 (673)
Q Consensus 540 ~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i-~ 617 (673)
.+...++.|+|.+ +.+..+ +.++ .+.+|+.|+|++|.|+.++ .+..|++|++|+++++. +..++..+ .
T Consensus 16 ~n~~~~~~L~L~~-------n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRG-------NQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccc-------cccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHH
Confidence 3445789999999 888776 4566 6889999999999999997 48889999999999866 99997666 4
Q ss_pred ccccCCeeeccccccccccccCCCCCCCCcCCeeEEccC
Q 005860 618 KLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSEFVVVRG 656 (673)
Q Consensus 618 ~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~~~~~~~ 656 (673)
.+++|++|++++|.+..+ ..+..|..+..|.......+
T Consensus 86 ~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp H-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-
T ss_pred hCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCC
Confidence 689999999999999877 45666666666666666544
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=4.6e-07 Score=97.32 Aligned_cols=143 Identities=28% Similarity=0.319 Sum_probs=66.8
Q ss_pred eEEEEEEcCCCCcccccccccc-ccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccc
Q 005860 494 LRHSMLVLGYEASFPISIFKAK-NLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKL 572 (673)
Q Consensus 494 ~r~l~l~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L 572 (673)
+..+.+..+....+++....++ +|+.|.+.++.. ..++..+..++.|+.|+++. +.+..+|...+.+
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~-------N~l~~l~~~~~~~ 185 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSF-------NDLSDLPKLLSNL 185 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccch-----hhhhhhhhccccccccccCC-------chhhhhhhhhhhh
Confidence 4444444444444444443342 555555555442 11212334555555555555 5555555555455
Q ss_pred cccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCC
Q 005860 573 IHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLS 649 (673)
Q Consensus 573 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~ 649 (673)
..|+.|+++++.+..+|..+..+.+|++|.++++. +...|..+.++.+|..|.+.++.+..+|..++.+++|++|.
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceec
Confidence 55555555555555555544444445555555432 33344444444444444444444444344444444444443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=5.9e-08 Score=93.47 Aligned_cols=131 Identities=22% Similarity=0.195 Sum_probs=88.3
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
|..+..+.++.+.+..+..+..-.+++|.|+++.|.. ....+ +..+.+|..|||++ +.+.++-..-.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-----~~v~n-La~L~~L~~LDLS~-------N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-----RTVQN-LAELPQLQLLDLSG-------NLLAECVGWHL 349 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccce-----eeehh-hhhcccceEeeccc-------chhHhhhhhHh
Confidence 3445556666666666655665667777777777653 11111 45667777788877 76666655555
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccc--cccccccCCeeecccccccccc
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
+|-+.+.|.|.+|.++.| +.+++|++|..||+++++ ++.+.. +||+|+.|++|.+.+|.+..+|
T Consensus 350 KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 666677777877777666 457788888888888755 766653 6788888888888777777665
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.27 E-value=1.9e-06 Score=92.53 Aligned_cols=137 Identities=21% Similarity=0.339 Sum_probs=79.1
Q ss_pred CcceechhhHHH---HHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 169 SEIRGRDEEKSS---LKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 169 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
++++|.+..+.. +..++.... ...+.|+|++|+||||||+.+.+.. ...| +.++......+-.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~-------~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR-------LSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC-------CceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHH
Confidence 468888877655 777664433 4568889999999999999998852 2222 2222211111111
Q ss_pred HHHHHHhhCCCCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEE--EcCChh--HH-
Q 005860 246 KAIIEALEGFVPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILV--TTRKET--VA- 319 (673)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~- 319 (673)
+.+++ ..... ..+++.+|++|+++.-...+.+.+...+.. |+.+++ ||.+.. +.
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 22222 11111 246788999999976655566666555443 444544 344322 11
Q ss_pred HhccccceeecCCCCccccc
Q 005860 320 RMMESIHVISIKELSEQECW 339 (673)
Q Consensus 320 ~~~~~~~~~~l~~L~~~~~~ 339 (673)
....-...+.+.+++.++.+
T Consensus 138 aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred HHhccceeeEeCCCCHHHHH
Confidence 11222467888888887754
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.3e-06 Score=98.45 Aligned_cols=90 Identities=23% Similarity=0.404 Sum_probs=72.3
Q ss_pred cceeeeccccccccccchh-hhccccccccccccceecCCCCc-ccchhhhcCCCccEEEeccCCCCccccccccccccC
Q 005860 545 LRALRIATLMNTWDVNSTN-KILKGIEKLIHLRYLRLVGLGTE-ELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNL 622 (673)
Q Consensus 545 L~~L~L~~~~~~~~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~L 622 (673)
+..|+|++ +.+. .+|..++.|.+|++|+|++|.+. .+|.+++.|++|++|+|++|..-..+|..+++|++|
T Consensus 420 v~~L~L~~-------n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDN-------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCC-------CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 66777777 6654 57888888899999999988864 788888999999999998877445788888899999
Q ss_pred Ceeeccccccc-cccccCCC
Q 005860 623 RHLTYDDSCLE-FIPKGIQR 641 (673)
Q Consensus 623 r~L~l~~~~l~-~lP~~i~~ 641 (673)
++|++++|.+. .+|..++.
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CEEECcCCcccccCChHHhh
Confidence 99998888876 67776664
No 44
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=9.8e-06 Score=84.54 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
|+.+.+||++++++...|..--.. ....-+.|+|..|+|||+.++.|.+..+....=..+++|.+-...++..++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 345999999999999887543211 11223889999999999999999996322211112789988888899999999
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhC--CCeEEEEEcCCC
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLV--GKKFLLILDDMW 286 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw 286 (673)
|+++++..........+....+.+.+. ++.++||||++-
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 999998544444555666677777764 589999999983
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=9.4e-07 Score=66.87 Aligned_cols=57 Identities=28% Similarity=0.451 Sum_probs=37.7
Q ss_pred ccccceecCCCCcccc-hhhhcCCCccEEEeccCCCCccccc-cccccccCCeeeccccc
Q 005860 574 HLRYLRLVGLGTEELP-ETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVNLRHLTYDDSC 631 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~Lr~L~l~~~~ 631 (673)
+|++|++++|.+..+| ..+..+++|++|++++|. +..+|. .+..|++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 5666777777777776 355667777777777654 666654 45777777777766664
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.22 E-value=1.7e-07 Score=103.36 Aligned_cols=94 Identities=31% Similarity=0.418 Sum_probs=69.6
Q ss_pred cceeeeccccccccccchhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCe
Q 005860 545 LRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRH 624 (673)
Q Consensus 545 L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~ 624 (673)
|+.||+++ +.+..+|..|..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+ +.+..+|.++..+++|+.
T Consensus 47 L~~l~lsn-------n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 47 LKSLDLSN-------NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQY 118 (1081)
T ss_pred eEEeeccc-------cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccc
Confidence 77777777 7777777777777888888887777777887777788888888775 447777877878888888
Q ss_pred eeccccccccccccCCCCCCCC
Q 005860 625 LTYDDSCLEFIPKGIQRLTNLR 646 (673)
Q Consensus 625 L~l~~~~l~~lP~~i~~L~~L~ 646 (673)
|+++.|.+..+|.-|..++.+.
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~ 140 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEE 140 (1081)
T ss_pred cccchhccCCCchhHHhhhHHH
Confidence 8877777777775554444333
No 47
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.22 E-value=6.6e-07 Score=101.65 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=94.5
Q ss_pred CceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccc
Q 005860 492 EKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEK 571 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~ 571 (673)
..++.+.+..+....+|..+. ++|++|.+++|.+. . +|..+ ...|..|++++ |.+..+|..+.
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt----~-LP~~l--p~sL~~L~Ls~-------N~Lt~LP~~l~- 324 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR----T-LPAHL--PSGITHLNVQS-------NSLTALPETLP- 324 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccc----c-Ccccc--hhhHHHHHhcC-------CccccCCcccc-
Confidence 467788887776666665443 57888888887631 1 22211 13677888888 88777776554
Q ss_pred ccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCC
Q 005860 572 LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQ 640 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~ 640 (673)
.+|++|++++|.+..+|.++. ++|+.|++++|. +..+|..+. ++|++|++++|.+..+|+.+.
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred -ccceeccccCCccccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCcCCCCCHhHH
Confidence 689999999999999998775 689999999976 888997663 689999999999999987654
No 48
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=2.4e-06 Score=88.14 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=62.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc--ccHHHHHHHHHHHhhCCCCCcC--c---H-HHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP--FDELRIAKAIIEALEGFVPTVG--E---L-NSLLES 268 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~--~---~-~~~~~~ 268 (673)
-..++|+|++|+|||||++.+++.... .+|+..+||.+++. .++.++++.+...+-....+.. . . ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999997433 37999999999876 7889999988654433322111 1 0 111122
Q ss_pred HHHH-hCCCeEEEEEcCC
Q 005860 269 IRAS-LVGKKFLLILDDM 285 (673)
Q Consensus 269 l~~~-l~~kr~LlVLDdv 285 (673)
.... -++++++|++|++
T Consensus 247 Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHcCCCeEEEEECh
Confidence 2222 3689999999999
No 49
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.20 E-value=8.7e-06 Score=90.52 Aligned_cols=118 Identities=15% Similarity=0.084 Sum_probs=78.2
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc---cccCC--eEEEEEcCCcccH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV---FEYFD--KRMWVCVSDPFDE 241 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~ 241 (673)
.|+.+.|||+++++|...|...-.+ .....++.|+|++|.|||++++.|.+.... ..... .+++|.+..-.++
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 3468999999999999888543211 123467889999999999999999875211 11222 2566766666678
Q ss_pred HHHHHHHHHHhhCCCCC-cCcHHHHHHHHHHHhC---CCeEEEEEcCCC
Q 005860 242 LRIAKAIIEALEGFVPT-VGELNSLLESIRASLV---GKKFLLILDDMW 286 (673)
Q Consensus 242 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~kr~LlVLDdvw 286 (673)
..++..|++++....+. .....+....+...+. ....+||||+|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 88999999999554332 2233344444554442 234689999993
No 50
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.18 E-value=6.9e-06 Score=81.60 Aligned_cols=121 Identities=25% Similarity=0.326 Sum_probs=78.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
+.+.-+.+||++|+||||||+.+.+..+-.. ..||..|....-..-.++|.++-. -...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 3467788999999999999999999744433 456776665444444444544321 123456
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEE--EcCChhH---HHhccccceeecCCCCccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILV--TTRKETV---ARMMESIHVISIKELSEQE 337 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~L~~~~ 337 (673)
++|..|++|.|..-+..+-+.+ +|.-.+|+-++| ||.+... +..+.-..++.|+.|+.++
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 7889999999966555554443 555567876666 6665442 2223446788888887554
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=3.8e-07 Score=88.04 Aligned_cols=123 Identities=24% Similarity=0.278 Sum_probs=100.8
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchhhh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCC 593 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~ 593 (673)
-..|.++++++|.+ ..+....+-.+.+++|+++. +.+..+-. +..|.+|..|||++|.+.++-..-.
T Consensus 283 Wq~LtelDLS~N~I-----~~iDESvKL~Pkir~L~lS~-------N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLI-----TQIDESVKLAPKLRRLILSQ-------NRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred Hhhhhhccccccch-----hhhhhhhhhccceeEEeccc-------cceeeehh-hhhcccceEeecccchhHhhhhhHh
Confidence 35688899998864 34555667788999999999 88776544 8889999999999999888877777
Q ss_pred cCCCccEEEeccCCCCccccccccccccCCeeecccccccccc--ccCCCCCCCCcCCee
Q 005860 594 ELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIP--KGIQRLTNLRTLSEF 651 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP--~~i~~L~~L~~L~~~ 651 (673)
+|-|.++|.|+++. ++.+. ++++|-+|..||+++|++..+- .+||+|+.|++|...
T Consensus 350 KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 88999999999855 77775 8899999999999999988664 578999988887543
No 52
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.17 E-value=1.3e-06 Score=98.82 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=46.0
Q ss_pred cchhhhccccccccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccC
Q 005860 560 NSTNKILKGIEKLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGI 639 (673)
Q Consensus 560 ~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i 639 (673)
+.+..+|... ..|+.|+|++|.+..+|... .+|+.|++++|. +..+|... .+|+.|++++|.++.+|..+
T Consensus 372 N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~-LssIP~l~---~~L~~L~Ls~NqLt~LP~sl 441 (788)
T PRK15387 372 NRLTSLPALP---SGLKELIVSGNRLTSLPVLP---SELKELMVSGNR-LTSLPMLP---SGLLSLSVYRNQLTRLPESL 441 (788)
T ss_pred cccccCcccc---cccceEEecCCcccCCCCcc---cCCCEEEccCCc-CCCCCcch---hhhhhhhhccCcccccChHH
Confidence 4444444322 34666666666666666432 456666776654 66666432 34566666667777777666
Q ss_pred CCCCCCCcC
Q 005860 640 QRLTNLRTL 648 (673)
Q Consensus 640 ~~L~~L~~L 648 (673)
+++++|+.|
T Consensus 442 ~~L~~L~~L 450 (788)
T PRK15387 442 IHLSSETTV 450 (788)
T ss_pred hhccCCCeE
Confidence 666655544
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.15 E-value=1e-05 Score=79.48 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=73.5
Q ss_pred chhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 174 RDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
.+..++.+..++... ....|.|+|..|+|||+||+.+++. ........+|++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~-------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH-----
Confidence 445667777765432 2467899999999999999999985 222334456665443211 00
Q ss_pred CCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc-ch-hhhhhhccC-CCCCeEEEEEcCChh---------HHHh
Q 005860 254 GFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYS-KW-EPFHYCLKN-GVRGSKILVTTRKET---------VARM 321 (673)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~ 321 (673)
..+...+.+. -+|||||+..-... .| +.+...+.. ...+.++|+||+... +...
T Consensus 82 -------------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 -------------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred -------------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0111122222 38999999543321 22 334433332 123447888887532 2222
Q ss_pred ccccceeecCCCCccc
Q 005860 322 MESIHVISIKELSEQE 337 (673)
Q Consensus 322 ~~~~~~~~l~~L~~~~ 337 (673)
+.....+++.++++++
T Consensus 148 ~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEE 163 (226)
T ss_pred HhcCeeEecCCCCHHH
Confidence 2234578899988865
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.12 E-value=1.5e-05 Score=89.44 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=96.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC---CeEEEEEcCCc---ccHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF---DKRMWVCVSDP---FDEL 242 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~ 242 (673)
++++|++..+..+...+.... ...+.|+|++|+||||||+.+++.......+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~-------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF-------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC-------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 468999999999888774332 4569999999999999999998864333332 12335544321 1222
Q ss_pred HHHHHH---------------HHHhhCCC----------------CCcCcH-HHHHHHHHHHhCCCeEEEEEcCCCCCCc
Q 005860 243 RIAKAI---------------IEALEGFV----------------PTVGEL-NSLLESIRASLVGKKFLLILDDMWTDDY 290 (673)
Q Consensus 243 ~~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~kr~LlVLDdvw~~~~ 290 (673)
.+...+ +...+... ++.+.+ ...+..+.+.+++++++++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 221111 11111100 011112 2357788889999999999888888777
Q ss_pred cchhhhhhhccCCCCCeEEEE--EcCChhH-HHhc-cccceeecCCCCccc
Q 005860 291 SKWEPFHYCLKNGVRGSKILV--TTRKETV-ARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 291 ~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~ 337 (673)
..|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~ed 357 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPED 357 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHH
Confidence 788888777776666555555 5664321 1111 112345666666554
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.12 E-value=4.4e-06 Score=94.57 Aligned_cols=79 Identities=22% Similarity=0.124 Sum_probs=44.0
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
+.+++.+.+..+....+|.. .++|++|.+++|.. ..+|.. +..|..|++++ |.+..+|..
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-----~~Lp~l---p~~L~~L~Ls~-------N~Lt~LP~~-- 300 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-----THLPAL---PSGLCKLWIFG-------NQLTSLPVL-- 300 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCch-----hhhhhc---hhhcCEEECcC-------Ccccccccc--
Confidence 45677888877766655532 35677777776653 112221 23455556665 555555542
Q ss_pred cccccccceecCCCCcccch
Q 005860 571 KLIHLRYLRLVGLGTEELPE 590 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~ 590 (673)
+++|++|+|++|.+..+|.
T Consensus 301 -p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 301 -PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred -ccccceeECCCCccccCCC
Confidence 2456666666666555543
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=2.5e-05 Score=80.74 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=93.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC----ccccccCCeEEEEEc-CCcccHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND----SDVFEYFDKRMWVCV-SDPFDELR 243 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~ 243 (673)
++++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++. .....|+|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 468899999999999886543 2457789999999999999888773 122356676656542 22223322
Q ss_pred HHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHH-Hh-
Q 005860 244 IAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVA-RM- 321 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~~- 321 (673)
.+++.+.+... -..+++-++|+|++..-+...++.+...+.....++.+|++|.+.+.. ..
T Consensus 78 -ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 22222222111 112445567777775455567889999998888899999888764321 11
Q ss_pred ccccceeecCCCCcccc
Q 005860 322 MESIHVISIKELSEQEC 338 (673)
Q Consensus 322 ~~~~~~~~l~~L~~~~~ 338 (673)
..-...+++.++++++.
T Consensus 141 ~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HhhceeeeCCCcCHHHH
Confidence 12256777887776663
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=2.6e-06 Score=92.73 Aligned_cols=164 Identities=20% Similarity=0.175 Sum_probs=91.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|-+..++.|..++.... -...+.++|+.|+||||+|+.+.+.......+...+|.|.+... +......-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCc
Confidence 478999999999988886554 23567999999999999999988753222223334444322110 00000000
Q ss_pred HHHhhCC-CCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhHHHhc-cc
Q 005860 249 IEALEGF-VPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETVARMM-ES 324 (673)
Q Consensus 249 ~~~l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~-~~ 324 (673)
+..+... .....+..++...+.. -..+++-++|+|+++......++.+...+......+.+|++|.. ..+...+ ..
T Consensus 87 v~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 87 VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000 0011111222222221 12356668999999766556677887777765556666665543 3332222 23
Q ss_pred cceeecCCCCccccc
Q 005860 325 IHVISIKELSEQECW 339 (673)
Q Consensus 325 ~~~~~l~~L~~~~~~ 339 (673)
...+++.+++.++..
T Consensus 167 c~~~~f~~ls~~el~ 181 (504)
T PRK14963 167 TQHFRFRRLTEEEIA 181 (504)
T ss_pred eEEEEecCCCHHHHH
Confidence 567899999988854
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.06 E-value=1.6e-05 Score=83.31 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|++..++.+..++..+. .+.+.++|+.|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~-------~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN-------LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC-------CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999998885433 345789999999999999998875
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=2.1e-06 Score=92.22 Aligned_cols=144 Identities=29% Similarity=0.332 Sum_probs=118.7
Q ss_pred ceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccc
Q 005860 493 KLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKL 572 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L 572 (673)
++..+.+..+....++..+..+++|+.|.+.++.. ..++.....+..|+.|++++ +.+..+|..+..+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-----~~l~~~~~~~~~L~~L~ls~-------N~i~~l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-----SDLPKLLSNLSNLNNLDLSG-------NKISDLPPEIELL 208 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchh-----hhhhhhhhhhhhhhheeccC-------CccccCchhhhhh
Confidence 68888888888777766778899999999998874 33444444788999999999 9999999988888
Q ss_pred cccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccccccccccCCeeeccccccccccccCCCCCCCCcCCe
Q 005860 573 IHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQRLTNLRTLSE 650 (673)
Q Consensus 573 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~~L~~L~~L~~ 650 (673)
.+|.+|.++++.+...|..+.++.++..|.+.++. +..+|..++++.+|+.|++++|.++.++. ++.+.+|+.|..
T Consensus 209 ~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~ 284 (394)
T COG4886 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDL 284 (394)
T ss_pred hhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceecccccccccccc-ccccCccCEEec
Confidence 88999999999888888889999999999977644 77778889999999999999999988876 666666666543
No 60
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.03 E-value=3.2e-06 Score=87.87 Aligned_cols=136 Identities=21% Similarity=0.151 Sum_probs=95.6
Q ss_pred cCceEEEEEEcCCCCc-cccccccc---cccchhhhccchhhhhhhhhHHHHhhhC-Cccceeeeccccccccccchh--
Q 005860 491 QEKLRHSMLVLGYEAS-FPISIFKA---KNLRSLFINNTLIQVSLTHVLQSLFDQL-KCLRALRIATLMNTWDVNSTN-- 563 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~-~~~~~~~~---~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~-- 563 (673)
..+++.+.+..+.... .+..+..+ ++|++|.+.++.........+...+..+ +.|+.|++++ +.+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~-------n~l~~~ 152 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR-------NRLEGA 152 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCC-------CcCCch
Confidence 4578888887766532 22233333 3499999988764322223344556666 8899999998 6644
Q ss_pred ---hhccccccccccccceecCCCCc-----ccchhhhcCCCccEEEeccCCCCc-----cccccccccccCCeeecccc
Q 005860 564 ---KILKGIEKLIHLRYLRLVGLGTE-----ELPETCCELLNLQVLEIEQCTSLK-----RLPLGIGKLVNLRHLTYDDS 630 (673)
Q Consensus 564 ---~lp~~i~~L~~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~c~~l~-----~lP~~i~~L~~Lr~L~l~~~ 630 (673)
.++..+..+.+|++|+|++|.+. .++..+..+++|+.|++++|. +. .++..+.++++|++|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC
Confidence 45556777788999999999865 456666777899999999986 43 35556778889999999888
Q ss_pred cccc
Q 005860 631 CLEF 634 (673)
Q Consensus 631 ~l~~ 634 (673)
.+..
T Consensus 232 ~l~~ 235 (319)
T cd00116 232 NLTD 235 (319)
T ss_pred cCch
Confidence 7763
No 61
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.03 E-value=1.1e-05 Score=91.37 Aligned_cols=137 Identities=20% Similarity=0.309 Sum_probs=76.8
Q ss_pred CcceechhhHH---HHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 169 SEIRGRDEEKS---SLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 169 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
++++|.+..+. .+...+... ....+.|+|++|+||||||+.+++. ....|. .+..+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~--- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-------RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK--- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-------CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH---
Confidence 46899888764 455555433 2456789999999999999999985 333441 111110 0111
Q ss_pred HHHHHHhhCCCCCcCcHHHHHHHHHHHh--CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEE--cCChh--HH
Q 005860 246 KAIIEALEGFVPTVGELNSLLESIRASL--VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVT--TRKET--VA 319 (673)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~ 319 (673)
+..+......+.+ .+++.+|||||++.-+..+++.+...+. .|+.++|+ |.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111112222222 2467799999996555555666554333 35555553 33321 11
Q ss_pred Hh-ccccceeecCCCCccccc
Q 005860 320 RM-MESIHVISIKELSEQECW 339 (673)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~~~~ 339 (673)
.. ..-...+.+++|+.++..
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~ 174 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLH 174 (725)
T ss_pred hHhhccccceecCCCCHHHHH
Confidence 11 122457889999987654
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.3e-06 Score=57.24 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=26.1
Q ss_pred ccccceecCCCCcccchhhhcCCCccEEEeccCCCCcccc
Q 005860 574 HLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLP 613 (673)
Q Consensus 574 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP 613 (673)
+|++|+|++|.|+.+|+.+++|++|++|++++|+ +..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5677777777777777777777777777777765 65554
No 63
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=5.8e-06 Score=62.49 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=51.6
Q ss_pred Cccceeeeccccccccccchhhhcc-ccccccccccceecCCCCcccch-hhhcCCCccEEEeccCC
Q 005860 543 KCLRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCT 607 (673)
Q Consensus 543 ~~L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~ 607 (673)
++|+.|++++ +.+..+|+ .+..+++|++|++++|.+..+|+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~-------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4688999999 99988885 67889999999999999999974 78999999999999975
No 64
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.01 E-value=3.7e-05 Score=77.34 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=80.3
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
.+.+.+|+..+..+..++...+ ..-+..|-|+|-.|.|||.+.+.+++... -..+|+++-+.++.+.++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~----~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS----CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC----cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHH
Confidence 4678999999999999886655 22356779999999999999999999642 24589999999999999999
Q ss_pred HHHHhhCCCCCcC-------cHHHHHHHHHH--HhC--CCeEEEEEcCC
Q 005860 248 IIEALEGFVPTVG-------ELNSLLESIRA--SLV--GKKFLLILDDM 285 (673)
Q Consensus 248 i~~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVLDdv 285 (673)
|+.+....+.+.. +.......+.+ ... ++.++||||++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 9999963322211 12222223333 122 46999999999
No 65
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=5.3e-06 Score=93.67 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=84.5
Q ss_pred cchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh-hhccccccccccccceecCCCCc-ccchhhhc
Q 005860 517 LRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-KILKGIEKLIHLRYLRLVGLGTE-ELPETCCE 594 (673)
Q Consensus 517 Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~LP~~i~~ 594 (673)
++.|.+.++. +...+|..+..+++|+.|+|++ +.+. .+|..++.+.+|++|+|++|.+. .+|+++++
T Consensus 420 v~~L~L~~n~----L~g~ip~~i~~L~~L~~L~Ls~-------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQG----LRGFIPNDISKLRHLQSINLSG-------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEECCCCC----ccccCCHHHhCCCCCCEEECCC-------CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 5666777665 3345666788999999999999 8865 68889999999999999999965 78999999
Q ss_pred CCCccEEEeccCCCCcccccccccc-ccCCeeeccccc
Q 005860 595 LLNLQVLEIEQCTSLKRLPLGIGKL-VNLRHLTYDDSC 631 (673)
Q Consensus 595 L~~L~~L~l~~c~~l~~lP~~i~~L-~~Lr~L~l~~~~ 631 (673)
|++|++|+|++|..-..+|..++.+ .++..+++.+|.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999987556899888764 466777776654
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=6e-05 Score=79.45 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=85.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+......... ..++..-....++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHH
Confidence 578999999999998886543 235678999999999999998887421111100 0000000000111
Q ss_pred HHHhhC-----CCCCcCcHHHHHHHHHHH-----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-h
Q 005860 249 IEALEG-----FVPTVGELNSLLESIRAS-----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-T 317 (673)
Q Consensus 249 ~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~ 317 (673)
...... ........++... +.+. ..+++-++|+|++..-....++.+...+.......++|++|.+. .
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000000 0000011122111 1111 12455699999996555446777777777666677777777543 2
Q ss_pred HHHh-ccccceeecCCCCccc
Q 005860 318 VARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~~ 337 (673)
+... .+-...+++.+++.++
T Consensus 162 l~~tI~SRc~~~~~~~l~~~e 182 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEK 182 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHH
Confidence 3222 1224678888887766
No 67
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.93 E-value=8.3e-06 Score=84.77 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=104.3
Q ss_pred CceEEEEEEcCCCCc-----cccccccc-cccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh--
Q 005860 492 EKLRHSMLVLGYEAS-----FPISIFKA-KNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-- 563 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~-----~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-- 563 (673)
++++++.+..+.... +...+..+ ++|+.|.+.++.........+...+..+..|+.|++++ +.+.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-------n~l~~~ 180 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-------NGIGDA 180 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-------CCCchH
Confidence 458899998776531 12234455 89999999998753323334566677888999999999 6644
Q ss_pred ---hhccccccccccccceecCCCCc-----ccchhhhcCCCccEEEeccCCCCcc-cccccc-----ccccCCeeeccc
Q 005860 564 ---KILKGIEKLIHLRYLRLVGLGTE-----ELPETCCELLNLQVLEIEQCTSLKR-LPLGIG-----KLVNLRHLTYDD 629 (673)
Q Consensus 564 ---~lp~~i~~L~~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~c~~l~~-lP~~i~-----~L~~Lr~L~l~~ 629 (673)
.++..+..+.+|++|+|++|.+. .++..+..+++|++|++++|. +.. -+..+. ...+|++|++++
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccC
Confidence 35556666789999999999864 455667788999999999986 543 111221 247999999999
Q ss_pred cccc-----cccccCCCCCCCCcCCeeEEccC
Q 005860 630 SCLE-----FIPKGIQRLTNLRTLSEFVVVRG 656 (673)
Q Consensus 630 ~~l~-----~lP~~i~~L~~L~~L~~~~~~~~ 656 (673)
|.+. .++..+..+ ..|..+.++.+
T Consensus 260 n~i~~~~~~~l~~~~~~~---~~L~~l~l~~N 288 (319)
T cd00116 260 NDITDDGAKDLAEVLAEK---ESLLELDLRGN 288 (319)
T ss_pred CCCCcHHHHHHHHHHhcC---CCccEEECCCC
Confidence 8775 233333334 44555555443
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=6e-05 Score=83.60 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=87.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-...++. ..+..-...+.|
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHH
Confidence 579999999999999986543 2346679999999999999877774211111100 001100111111
Q ss_pred HHH-----hhCCCCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-H
Q 005860 249 IEA-----LEGFVPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-V 318 (673)
Q Consensus 249 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 318 (673)
... +.....+....+++...+... ..++.-++|||++..-+...++.+...+.......++|+||.+.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 100 000000011122222222221 134555888999966665668888887776666788888777643 2
Q ss_pred HH-hccccceeecCCCCcccc
Q 005860 319 AR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~~~~ 338 (673)
.. ...-...|+++.++.++.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeI 183 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHI 183 (830)
T ss_pred cchhhhheEEEecCCcCHHHH
Confidence 21 122256778888877664
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=6.6e-05 Score=84.92 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=89.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC-------------------Ce
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-------------------DK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~ 229 (673)
.+++|-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-.... .-
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 579999999999999886544 13456899999999999999998852211111 00
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
++++..+....+ +++.++...+.. -..+++-++|||++..-.....+.|...+.......+
T Consensus 90 viEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 111211100111 111222222211 1246777999999976666677888777776556666
Q ss_pred EEEEcCC-hhHHHh-ccccceeecCCCCccccc
Q 005860 309 ILVTTRK-ETVARM-MESIHVISIKELSEQECW 339 (673)
Q Consensus 309 iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~ 339 (673)
+|++|.+ ..+... ..-...|++++|+.++..
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~ 184 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIG 184 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHH
Confidence 6666654 333322 233578899999887753
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=6.1e-05 Score=82.34 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=88.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc-------------------ccCCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF-------------------EYFDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~ 229 (673)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+.+...-. ..|..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 578999999999999886543 23567899999999999998887631100 01112
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
.+++.......+. +..++...+.. -..+++-++|+|++..-+...++.+...+......+.
T Consensus 90 lieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 2222221111111 11222222221 1245667999999966555677788888877655666
Q ss_pred EEEEcCC-hhHHHh-ccccceeecCCCCcccc
Q 005860 309 ILVTTRK-ETVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 309 iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
+|++|.+ ..+... ..-...+++++++.++-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI 183 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADI 183 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHH
Confidence 6654443 333322 23367888999987763
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=97.90 E-value=6.2e-05 Score=78.03 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=80.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCC-eEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD-KRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|.++.++.|..++.... .+.+.++|++|+||||+|+.+.+... ...|. .++-+..++..... ..++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~-------~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN-------MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHH
Confidence 478999988888888775433 34467999999999999999887421 11222 12222333322222 2222
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHh-cccc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARM-MESI 325 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~ 325 (673)
+++.+...... .-.++.-+++||++..-.....+.+...+......+++|+++... .+... ..-.
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22222111000 002456689999995544444455655555445567777776542 22111 1113
Q ss_pred ceeecCCCCccc
Q 005860 326 HVISIKELSEQE 337 (673)
Q Consensus 326 ~~~~l~~L~~~~ 337 (673)
..++++++++++
T Consensus 151 ~~i~f~~l~~~~ 162 (319)
T PLN03025 151 AIVRFSRLSDQE 162 (319)
T ss_pred hcccCCCCCHHH
Confidence 466777776655
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=6.7e-05 Score=82.32 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=88.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-.. ++.. ..++.-...+.|
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR------LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHH
Confidence 579999999999999987554 246789999999999999998877421111 1000 000000011111
Q ss_pred HHHhhC-----CCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-H
Q 005860 249 IEALEG-----FVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-V 318 (673)
Q Consensus 249 ~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v 318 (673)
...-.. ........++.+..+.. -..++.-++|+|++..-+....+.+...+.....+.++|++|.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 100000 00001122222222211 1235666899999966555667777777776556677777776532 2
Q ss_pred H-HhccccceeecCCCCcccc
Q 005860 319 A-RMMESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~-~~~~~~~~~~l~~L~~~~~ 338 (673)
. ....-...+++++++.++.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI 182 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEI 182 (702)
T ss_pred hHHHHHhhheeeccCCCHHHH
Confidence 2 2223357788888888764
No 73
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=4.6e-05 Score=80.22 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=71.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~---------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK---------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC---------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 46888999999999988643 357889999999999999998864444578889999999988876654322
Q ss_pred HHHhhCCCCCcC-cHHHHHHHHHHHh--CCCeEEEEEcCCCCCC
Q 005860 249 IEALEGFVPTVG-ELNSLLESIRASL--VGKKFLLILDDMWTDD 289 (673)
Q Consensus 249 ~~~l~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVLDdvw~~~ 289 (673)
. ....... ......+.+.... .++++++|+|++-..+
T Consensus 246 r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 R----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred C----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1 1100000 0011122222222 2478999999994433
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.87 E-value=9.2e-05 Score=76.99 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=78.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc--CCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV--SDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~ 246 (673)
.+++|+++.++.+..++.... .+.+.|+|..|+||||+|+.+.+... ...+.. .++.+ +...... ...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~-------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN-------MPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHH
Confidence 468999999999999885433 34579999999999999999988521 111211 12222 2222211 111
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHh-ccc
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARM-MES 324 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~ 324 (673)
+.+..+....+ .....+-+|++|++..-.....+.+...+......+++|+++... .+... ...
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 22221111100 011235689999984433334555666665555566777776432 11111 111
Q ss_pred cceeecCCCCccc
Q 005860 325 IHVISIKELSEQE 337 (673)
Q Consensus 325 ~~~~~l~~L~~~~ 337 (673)
...+++++++.++
T Consensus 153 ~~~~~~~~l~~~e 165 (319)
T PRK00440 153 CAVFRFSPLKKEA 165 (319)
T ss_pred hheeeeCCCCHHH
Confidence 3346666666554
No 75
>PRK08727 hypothetical protein; Validated
Probab=97.81 E-value=0.0001 Score=72.62 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV 235 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (673)
..+.|+|..|+|||+|++++++. .......+.|+++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 45999999999999999999885 3333345667764
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00016 Score=78.66 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=89.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCe-EEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDK-RMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|-+.-+..|...+..+. -...+-++|+.|+||||+|+.+++...-...+.. -.+..+... .-...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHH
Confidence 478999999998888775543 2357889999999999999999875221111100 000000000 00011
Q ss_pred HHHHhhC-----CCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEE-EcCChh
Q 005860 248 IIEALEG-----FVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILV-TTRKET 317 (673)
Q Consensus 248 i~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 317 (673)
|...... ........+++...+.. -+.+++-++|+|+++.-....++.+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 1100000 00001112222222221 1345677899999987666778888888876666666665 444444
Q ss_pred HHHhc-cccceeecCCCCccccc
Q 005860 318 VARMM-ESIHVISIKELSEQECW 339 (673)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~~~~ 339 (673)
+...+ .....+++++++.++..
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~ 193 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIF 193 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHH
Confidence 44332 22456888888877643
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00013 Score=78.83 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=81.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccccc--C-----------------Ce
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY--F-----------------DK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F-----------------~~ 229 (673)
++++|.+...+.|...+..+. -...+.++|++|+||||+|+.+.+....... + ..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 579999988888888776543 2356889999999999999998774211100 0 01
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
.+.+..+.......+ ++|.+ .... ...+++-++|+|++..-.....+.+...+........
T Consensus 88 v~el~aa~~~gid~i-R~i~~-----------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 88 VIELDAASNRGIDEI-RKIRD-----------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred cEEEeCcccCCHHHH-HHHHH-----------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 112222111111111 11111 1111 1235667999999954444455666666655444455
Q ss_pred EEEEcCC-hhHHHhc-cccceeecCCCCcccc
Q 005860 309 ILVTTRK-ETVARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 309 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
+|++|.+ ..+...+ .....+++.+++.++.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el 181 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELI 181 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHH
Confidence 4444433 3333322 2356788888888764
No 78
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.79 E-value=6.2e-05 Score=87.41 Aligned_cols=289 Identities=15% Similarity=0.148 Sum_probs=143.5
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc---CCc--c-cHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV---SDP--F-DELR 243 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~--~-~~~~ 243 (673)
.++||+.+++.|...+..-. ...-.++.+.|..|||||+|++.|..- +...+...+--.+ ..+ + ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~----~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS----KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh----CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHH
Confidence 37899999999999886655 245679999999999999999999985 3333211111111 111 1 1122
Q ss_pred HHHHHHHHh-------------------hCCCC-----------------Cc-----CcHHH-----HHHHHHHHh-CCC
Q 005860 244 IAKAIIEAL-------------------EGFVP-----------------TV-----GELNS-----LLESIRASL-VGK 276 (673)
Q Consensus 244 ~~~~i~~~l-------------------~~~~~-----------------~~-----~~~~~-----~~~~l~~~l-~~k 276 (673)
.++++..++ +.... .. ...+. ....+.... +.|
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 333333333 11100 00 00011 112223233 456
Q ss_pred eEEEEEcCCCCCCccchhhhhhhccCCCC----CeEEEEE--cCCh--hHHHhccccceeecCCCCccccc---------
Q 005860 277 KFLLILDDMWTDDYSKWEPFHYCLKNGVR----GSKILVT--TRKE--TVARMMESIHVISIKELSEQECW--------- 339 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~----gs~iivT--tr~~--~v~~~~~~~~~~~l~~L~~~~~~--------- 339 (673)
+.++|+||+.-.|....+.+......-.. ...|..+ .+.. .+...-.....+.|.||+..+.-
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 99999999944444444443333222211 1123333 2222 12222233578999999998864
Q ss_pred ---------------cCCchhhHHHHhhhhccC------CCHHHHHHHHhhhcccchhhhhccchhhhhcccCCChhhhh
Q 005860 340 ---------------CKGLPLAAKTIGSLLRFK------RTREEWESILDSELWQLEEFEKGLLAPLLLSYNDLPPMIKR 398 (673)
Q Consensus 340 ---------------c~GlPLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~ 398 (673)
..|.|+-+.-+-..+..+ .+...|..-... ....... +.+...+..-.+.||...+.
T Consensus 235 ~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 235 TKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred cccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCHHHHH
Confidence 678998888877777542 223333322111 1111111 22444577777888887777
Q ss_pred hhchHHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHhcccccccccCCCCcEeE---E-EeChHHHHHHHH
Q 005860 399 CFQYYELIKLWMAQDYIMPEGNKELEIIGEEYFDYLAMRSFFQEFFKDNEGVVVR---C-KMHDIVHDFAQF 466 (673)
Q Consensus 399 cfl~~~l~~~w~a~g~i~~~~~~~~e~~~~~~~~~L~~~sli~~~~~~~~~~~~~---~-~mHdlv~~~a~~ 466 (673)
..-..+++..=...+.+..-..+.....+....+.|....++-..+.+..+.... | -.||.+++.+-.
T Consensus 313 Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 313 VLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 6555333321111111111111133444555555555544443222222221111 1 357777776644
No 79
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00016 Score=74.84 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=81.3
Q ss_pred ccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 166 IDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
..+..++||+.+++.+.+++...-+ .+..+-+.|.|-+|.|||.+...++.+..-...=-.++++..-.-..+..++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle---~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE---LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh---cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 3567899999999999999866543 2456778999999999999999999974322111245777666556778889
Q ss_pred HHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC--eEEEEEcCC
Q 005860 246 KAIIEALEGFVPTVGELNSLLESIRASLVGK--KFLLILDDM 285 (673)
Q Consensus 246 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVLDdv 285 (673)
..|...+...........+....+..+.... -+|+|||.+
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEm 265 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEM 265 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechh
Confidence 9988888332111122244555666666543 689999988
No 80
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.6e-05 Score=54.13 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.8
Q ss_pred CCccEEEeccCCCCccccccccccccCCeeecccccccccc
Q 005860 596 LNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 596 ~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
++|++|+++++. +..+|..+++|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 579999999976 9999988999999999999999988775
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00013 Score=79.84 Aligned_cols=162 Identities=13% Similarity=0.196 Sum_probs=87.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
+++||-+.-++.|.+++..+.- ...+.++|..|+||||+|+.+.+...-... +..--+. +..+..-...+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL------HHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC------ceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHH
Confidence 5799999999999999876542 356789999999999999888764211000 0000000 0000000011111
Q ss_pred HHH-----hhCCCCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEA-----LEGFVPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
... +..........+++.+.+... ..++.-++|||++..-+...++.|...+.....+.++|++|.+ ..+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 100 000000011223333222221 2456678999999766666778887777665555665555544 444
Q ss_pred HHh-ccccceeecCCCCcccc
Q 005860 319 ARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~ 338 (673)
... ..-...|.++.++.++.
T Consensus 168 lpTIrSRCq~f~f~~ls~eei 188 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHI 188 (700)
T ss_pred hhHHHHHHHhcccCCCChHHH
Confidence 332 22356788888877664
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.75 E-value=1.9e-06 Score=86.45 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=92.2
Q ss_pred chhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh-ccccccccccccceecC-CCCcccch-hhhc
Q 005860 518 RSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI-LKGIEKLIHLRYLRLVG-LGTEELPE-TCCE 594 (673)
Q Consensus 518 r~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~-~~i~~LP~-~i~~ 594 (673)
..+.+..|. +..+++..|+.+++||.|||++ +.+..+ |..+..|..|..|-+-+ |+|+++|. .+++
T Consensus 70 veirLdqN~----I~~iP~~aF~~l~~LRrLdLS~-------N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 70 VEIRLDQNQ----ISSIPPGAFKTLHRLRRLDLSK-------NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred eEEEeccCC----cccCChhhccchhhhceecccc-------cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 344555554 4466778889999999999999 888776 67788888877777766 66999994 6788
Q ss_pred CCCccEEEeccCCCCcccc-ccccccccCCeeeccccccccccc-cCCCCCCCCcCC
Q 005860 595 LLNLQVLEIEQCTSLKRLP-LGIGKLVNLRHLTYDDSCLEFIPK-GIQRLTNLRTLS 649 (673)
Q Consensus 595 L~~L~~L~l~~c~~l~~lP-~~i~~L~~Lr~L~l~~~~l~~lP~-~i~~L~~L~~L~ 649 (673)
|..||-|.+..|+ +.-++ +.+..|++|+.|.+..|.+..++. .+..+.+++++.
T Consensus 139 L~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 139 LSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9999999998877 55555 568899999999988888888887 366666666664
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.73 E-value=0.00017 Score=74.90 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
-++++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++.. .. ....++.+. .... ..++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~------~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~~ 86 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR------IPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVRN 86 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHHH
Confidence 3578999999999999886433 24678889999999999999998852 11 223444443 2221 1111
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCCh
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKE 316 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (673)
.+..+... ..+.+.+-+||+||+... .....+.+...+.....++++|+||...
T Consensus 87 ~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 87 RLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11111000 001234557899999433 2222334544455555677899988653
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00034 Score=73.88 Aligned_cols=149 Identities=9% Similarity=0.049 Sum_probs=84.5
Q ss_pred CcceechhhHHHHHHHhccCCccc---ccCCeEEEEEEccCCChHHHHHHHHhcCcccc-------------------cc
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEE---IINDIQIITIVGMGGIGKTTLAQFAYNDSDVF-------------------EY 226 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 226 (673)
++++|-+.-++.|.+.+..+..+. +..-..-+.++|+.|+||||+|+.+.+..--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 468999999999999987643100 00124568899999999999998876521000 01
Q ss_pred CCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccC
Q 005860 227 FDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 227 F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.| ..++.... .....+++...+.. -..+++-++|+|++..-+....+.+...+..
T Consensus 85 pD-~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PD-VRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CC-EEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11 11111100 00112222211111 1134555888899965555556667777766
Q ss_pred CCCCeEEEEEcCCh-hHHHh-ccccceeecCCCCcccc
Q 005860 303 GVRGSKILVTTRKE-TVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 303 ~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
...+..+|++|.+. .+... ..-...+.+++++.++.
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i 181 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAV 181 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHH
Confidence 56667677666653 33322 22356788888887765
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.71 E-value=0.00032 Score=68.26 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=70.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccC--CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYF--DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
...+.|+|..|+|||.|.+++++. +.... ..++|+ +..++...+...+... . ...+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~-----~----~~~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------SAEEFIREFADALRDG-----E----IEEFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------EHHHHHHHHHHHHHTT-----S----HHHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------cHHHHHHHHHHHHHcc-----c----chhhhhhhh
Confidence 445789999999999999999996 33322 246677 4556666676666541 1 234555555
Q ss_pred CCeEEEEEcCCCCCCcc-chhh-hhhhccC-CCCCeEEEEEcCCh---------hHHHhccccceeecCCCCccc
Q 005860 275 GKKFLLILDDMWTDDYS-KWEP-FHYCLKN-GVRGSKILVTTRKE---------TVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~-~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~ 337 (673)
+-. +|++||+..-... .|.. +...+.. ...|-+||+|++.. .+...+...-.++++++++++
T Consensus 97 ~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 97 SAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp TSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred cCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 443 7889999542221 2332 2222222 23466899998542 233334455677787777665
No 86
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00023 Score=78.96 Aligned_cols=160 Identities=12% Similarity=0.150 Sum_probs=86.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccccc--CCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY--FDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~ 246 (673)
++++|-+.-++.|.+++.... -...+.++|..|+||||+|+.+.+...-... ..+... ..++.-...+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~ 85 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACR 85 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHH
Confidence 578999888899999886554 2356789999999999999888553110000 000000 0011111111
Q ss_pred HHHHHhh-----CCCCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-h
Q 005860 247 AIIEALE-----GFVPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-E 316 (673)
Q Consensus 247 ~i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~ 316 (673)
.|-..-. .........++..+.+... ..++.-++|||++..-+...++.+...+.......++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 1100000 0000011122222222111 1244558899999776666778888777765556666655543 3
Q ss_pred hHHH-hccccceeecCCCCcccc
Q 005860 317 TVAR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 317 ~v~~-~~~~~~~~~l~~L~~~~~ 338 (673)
.+.. ...-...++++.++.++.
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei 188 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETV 188 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHH
Confidence 3332 223367889999988764
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=97.70 E-value=0.00014 Score=79.89 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=83.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+..++.+..|+..-.. ....+.+.|+|++|+||||+|++++++. .|+ .+-++.++..+.. ....+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~---g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK---GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHH
Confidence 5799999999999999854321 1226789999999999999999999963 222 3344555433222 22333
Q ss_pred HHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCc----cchhhhhhhccCCCCCeEEEEEcCChh-HHH--h
Q 005860 249 IEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDY----SKWEPFHYCLKNGVRGSKILVTTRKET-VAR--M 321 (673)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~--~ 321 (673)
+....... .....++-+||+|++..-.. ..+..+...+.. .+..||+|+.+.. ... .
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32221110 01113677999999954221 224455554443 2345666664421 111 1
Q ss_pred ccccceeecCCCCccccc
Q 005860 322 MESIHVISIKELSEQECW 339 (673)
Q Consensus 322 ~~~~~~~~l~~L~~~~~~ 339 (673)
-.....+.+.+++.++..
T Consensus 149 rsr~~~I~f~~~~~~~i~ 166 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIV 166 (482)
T ss_pred hccceEEEecCCCHHHHH
Confidence 122456778888776643
No 88
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=9.7e-05 Score=72.11 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=58.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
.+.+.|+|..|+|||+|++.+++... ..|++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 35689999999999999999987521 2244321 1111111111 11
Q ss_pred eEEEEEcCCCCCCccchhhhhhhccC-CCCCeEEEEEcCC---------hhHHHhccccceeecCCCCccc
Q 005860 277 KFLLILDDMWTDDYSKWEPFHYCLKN-GVRGSKILVTTRK---------ETVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~ 337 (673)
-+|++||+..... .-+.+...+.. ...|..||+|++. .++...+.....+++++++.++
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 2788899943211 11223333322 2346679998873 3334444556677888777654
No 89
>PRK08116 hypothetical protein; Validated
Probab=97.70 E-value=0.00011 Score=73.68 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=61.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
..+.++|..|+|||.||.++++. +...-..++|++ ..+++..+......... .. ...+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhcCCC
Confidence 35889999999999999999996 333334566774 34455555554432211 11 223334444444
Q ss_pred EEEEEcCCCCCCccchhh--hhhhccC-CCCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDYSKWEP--FHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 315 (673)
||||||+-.+....|.. +...+.. -..|..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995444444533 3333332 2346679999874
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00019 Score=79.73 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=89.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+...-...+. +..+..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHH
Confidence 579999999999998886543 134578999999999999999877521111000 0011111111111
Q ss_pred HHH-------hhCCC-CCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEA-------LEGFV-PTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
... +.... ...++..++...+.. -..+++-++|+|++..-+....+.|...+.......++|++|.+ ..+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 110 00000 011112222222211 13466779999999766666778887777765556666665554 434
Q ss_pred HH-hccccceeecCCCCccccc
Q 005860 319 AR-MMESIHVISIKELSEQECW 339 (673)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~~~~~ 339 (673)
.. ...-...|.+++++.++..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~ 184 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIR 184 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHH
Confidence 32 2233678899999887753
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00012 Score=78.08 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=87.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCC-eEEEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD-KRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 247 (673)
.+++|-+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-..... ..+..| ..-..+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C----~sC~~i~~g 87 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC----TSCLEITKG 87 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC----cHHHHHHcc
Confidence 578999999999998886543 124688999999999999999988521111000 001111 011111111
Q ss_pred HHHHh---hC-CCCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhHHHh
Q 005860 248 IIEAL---EG-FVPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETVARM 321 (673)
Q Consensus 248 i~~~l---~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~ 321 (673)
+...+ .. .....++..++.+.+... ..++.-++|+|++..-+...++.+...+.........|++|.. ..+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 10000 00 001111222222233221 2456679999999766666788887777654445555545443 444322
Q ss_pred -ccccceeecCCCCccc
Q 005860 322 -MESIHVISIKELSEQE 337 (673)
Q Consensus 322 -~~~~~~~~l~~L~~~~ 337 (673)
..-...|.+.+++.++
T Consensus 168 I~SRCq~~~f~~ls~~~ 184 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSV 184 (484)
T ss_pred HHhhhheeeecCCCHHH
Confidence 2235678888887655
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00022 Score=78.02 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=85.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccccc-------------------CCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY-------------------FDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~ 229 (673)
+++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-... |.-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 579999999999999996554 2346789999999999999888774211111 111
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKI 309 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~i 309 (673)
++.+..+....++++ +++++.+.. .-..++.-++|+|++..-+....+.+...+......+++
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222222211112111 112211110 011356668999999665556777777777766666777
Q ss_pred EEEcCC-hhHHHh-ccccceeecCCCCccc
Q 005860 310 LVTTRK-ETVARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 310 ivTtr~-~~v~~~-~~~~~~~~l~~L~~~~ 337 (673)
|++|.+ ..+... ..-...+++++++.++
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~ 182 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQ 182 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHH
Confidence 766544 333222 2224567788877665
No 93
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.7e-05 Score=80.91 Aligned_cols=133 Identities=22% Similarity=0.212 Sum_probs=69.8
Q ss_pred CceEEEEEEcCCCCcccc--ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc-
Q 005860 492 EKLRHSMLVLGYEASFPI--SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG- 568 (673)
Q Consensus 492 ~~~r~l~l~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~- 568 (673)
+++|.+++..+.....+. ....++++|.|+++.+.++. ....-.+..+|++|++|+++. +.+....++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~-------Nrl~~~~~s~ 191 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSS-------NRLSNFISSN 191 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhccccc-------ccccCCcccc
Confidence 445555555544432221 23456777777777665321 122334556677777777766 443322111
Q ss_pred -cccccccccceecCCCCc--------------------------ccchhhhcCCCccEEEeccCCCCcccc--cccccc
Q 005860 569 -IEKLIHLRYLRLVGLGTE--------------------------ELPETCCELLNLQVLEIEQCTSLKRLP--LGIGKL 619 (673)
Q Consensus 569 -i~~L~~Lr~L~L~~~~i~--------------------------~LP~~i~~L~~L~~L~l~~c~~l~~lP--~~i~~L 619 (673)
-..+.||+.|.|++|.+. .--.+...++.|+.|||++++ +..+| ..++.|
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence 123455555555555542 111112235667777777755 55566 346777
Q ss_pred ccCCeeecccccccc
Q 005860 620 VNLRHLTYDDSCLEF 634 (673)
Q Consensus 620 ~~Lr~L~l~~~~l~~ 634 (673)
+.|+.|+++.|.+..
T Consensus 271 ~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIAS 285 (505)
T ss_pred cchhhhhccccCcch
Confidence 777777776666553
No 94
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.8e-05 Score=89.20 Aligned_cols=130 Identities=23% Similarity=0.242 Sum_probs=92.8
Q ss_pred CceEEEEEEcCCC--Cccccccc-cccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccc
Q 005860 492 EKLRHSMLVLGYE--ASFPISIF-KAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKG 568 (673)
Q Consensus 492 ~~~r~l~l~~~~~--~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~ 568 (673)
.+++++.+.+... ...+..++ .+|.|++|.+.+-.. ....+...+.++++|+.||+++ +.+..+ ..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~---~~~dF~~lc~sFpNL~sLDIS~-------TnI~nl-~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF---DNDDFSQLCASFPNLRSLDISG-------TNISNL-SG 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee---cchhHHHHhhccCccceeecCC-------CCccCc-HH
Confidence 4566666655332 12222333 479999999988653 1233566788999999999999 888877 78
Q ss_pred cccccccccceecCCCCcccc--hhhhcCCCccEEEeccCCCCccccc-------cccccccCCeeeccccccc
Q 005860 569 IEKLIHLRYLRLVGLGTEELP--ETCCELLNLQVLEIEQCTSLKRLPL-------GIGKLVNLRHLTYDDSCLE 633 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~c~~l~~lP~-------~i~~L~~Lr~L~l~~~~l~ 633 (673)
|++|++|+.|.+++-.+..-+ ..+.+|++|++||+|...+. .-|. .-..|++||+||.+++.+.
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999999999987766543 46789999999999985532 2221 1234889999998887654
No 95
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.67 E-value=0.00029 Score=70.16 Aligned_cols=115 Identities=21% Similarity=0.138 Sum_probs=82.5
Q ss_pred Ccceech---hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccH
Q 005860 169 SEIRGRD---EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDE 241 (673)
Q Consensus 169 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~ 241 (673)
+.++|-. +-++++.++|..+. .....-+.|||.+|.|||+++++..+.--... .--.++.|.....++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 4556643 34566666666554 34567799999999999999988886421110 1125778888899999
Q ss_pred HHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC-CeEEEEEcCCCC
Q 005860 242 LRIAKAIIEALEGFVPTVGELNSLLESIRASLVG-KKFLLILDDMWT 287 (673)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~ 287 (673)
..+...|+++++.+.........+.......++. +-=+||+|.+.+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999999999877666766666666666654 445899999943
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00018 Score=76.78 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=84.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE-cCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC-VSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~ 247 (673)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-...+....|.. +..++..-...+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 578999999999988886543 134588999999999999988776421111110000100 0011110011111
Q ss_pred HHHHhhC-----CCCCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC-Ch
Q 005860 248 IIEALEG-----FVPTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR-KE 316 (673)
Q Consensus 248 i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~ 316 (673)
+...... ........+++.+ +.+.+ .+++-++|+|++..-....++.+...+......+.+|++|. ..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1110000 0001111233322 22222 34566889999955454567788888876666777666553 33
Q ss_pred hHHHhc-cccceeecCCCCccc
Q 005860 317 TVARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 317 ~v~~~~-~~~~~~~l~~L~~~~ 337 (673)
.+.... .....++++++++++
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~e 190 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEE 190 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHH
Confidence 333221 123466777776655
No 97
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2.2e-05 Score=88.55 Aligned_cols=108 Identities=22% Similarity=0.220 Sum_probs=79.9
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccc--hhhhccccccccccccceecCCCCcccchh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNS--TNKILKGIEKLIHLRYLRLVGLGTEELPET 591 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~ 591 (673)
-.+|++|++.+... -....+...-..||+|+.|.+.+ -. ..++-.-..++++|+.||+++|+++.+ ..
T Consensus 121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~-------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISG-------RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecC-------ceecchhHHHHhhccCccceeecCCCCccCc-HH
Confidence 46899999988653 12223334455788999999988 33 223444456778999999999999999 88
Q ss_pred hhcCCCccEEEeccCCCCccccc--cccccccCCeeecccccc
Q 005860 592 CCELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCL 632 (673)
Q Consensus 592 i~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l 632 (673)
|++|+|||+|.+++.. ++.-+. ++-+|++|++||++....
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 9999999999998754 554442 578999999999876543
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.64 E-value=0.00021 Score=75.52 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=39.4
Q ss_pred CCcceechhhHHHHHHHhccCCccc------ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEE------IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++.|+++.++++.+.+...-... +....+-+.++|++|+|||++|+++++.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999998774321100 0123456899999999999999999985
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00028 Score=78.29 Aligned_cols=143 Identities=15% Similarity=0.229 Sum_probs=82.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccccc-------------------CCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY-------------------FDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~ 229 (673)
++++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-... |..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 579999999999999987543 2356899999999999999888774111100 100
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCC
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVR 305 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 305 (673)
.+.+..+.. ...+.+...+.. -..+++-++|+|++..-+....+.+...+.....
T Consensus 90 vlEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 90 LLEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred eEEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 111211111 111222222211 1235667899999955444446666666765445
Q ss_pred CeEEEEEcCCh-hHHH-hccccceeecCCCCcccc
Q 005860 306 GSKILVTTRKE-TVAR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 306 gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~ 338 (673)
..++|++|.+. .+.. ..+-...+.++.++.++.
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI 183 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHH
Confidence 56677666543 2221 122245567777777663
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.61 E-value=0.0003 Score=69.32 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
...+.|+|+.|+|||+|++.+++. ....-..+.|+++..... ...+.. +.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-
Confidence 357899999999999999999985 222334566776543110 001111 11111
Q ss_pred eEEEEEcCCCCCC-ccchhh-hhhhccC-CCCC-eEEEEEcCCh---------hHHHhccccceeecCCCCccc
Q 005860 277 KFLLILDDMWTDD-YSKWEP-FHYCLKN-GVRG-SKILVTTRKE---------TVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 277 r~LlVLDdvw~~~-~~~~~~-l~~~l~~-~~~g-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~ 337 (673)
--+|++||+.... ...|+. +...+.. ...| .++|+||+.. .+...+....+++++++++++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 1378999994321 124443 2222222 1233 3789998743 233334445677777776544
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.00016 Score=64.09 Aligned_cols=21 Identities=43% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999996
No 102
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00027 Score=63.21 Aligned_cols=87 Identities=24% Similarity=0.117 Sum_probs=46.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC-
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK- 276 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 276 (673)
..+.|+|++|+||||+|+.+.... ......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999998862 222224555554433222111111 111111111122222233444444443
Q ss_pred eEEEEEcCCCCC
Q 005860 277 KFLLILDDMWTD 288 (673)
Q Consensus 277 r~LlVLDdvw~~ 288 (673)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 489999999553
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00035 Score=76.62 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=84.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...-.. |... ..++.-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK------LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHH
Confidence 578999999999999886543 235688999999999999988877421101 1110 011111111111
Q ss_pred HHHhhCC-----CCCcCcHHHH---HHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEALEGF-----VPTVGELNSL---LESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~l~~~-----~~~~~~~~~~---~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
....... .......+++ ...+... ..+++-++|+|++..-+...++.+...+........+|++|.. ..+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1110000 0000112222 2111111 1233446999999655555677777777765556666655543 333
Q ss_pred HHh-ccccceeecCCCCcccc
Q 005860 319 ARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~ 338 (673)
... ......+++.+++.++.
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL 183 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSEL 183 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHH
Confidence 322 22356788888887764
No 104
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0008 Score=70.49 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=90.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc--cCCe----EEEEEcCCcccHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE--YFDK----RMWVCVSDPFDEL 242 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~----~~wv~vs~~~~~~ 242 (673)
.+++|-+..++.+.+.+..+.- ...+.++|+.|+||+|+|..+.+..--.. ..+. ..=..+...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 5799999999999998876542 34688999999999999966655311000 0000 0000000000
Q ss_pred HHHHHHHHHhhCC---------C-----CCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCC
Q 005860 243 RIAKAIIEALEGF---------V-----PTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNG 303 (673)
Q Consensus 243 ~~~~~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~ 303 (673)
...+.|...-... . .....+++.. .+.+.+ .+.+-++|+|++..-+....+.+...+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 0111111100000 0 0111234422 333333 256678999999766667777888777766
Q ss_pred CCCeEEEEEcCChh-HHHh-ccccceeecCCCCccccc
Q 005860 304 VRGSKILVTTRKET-VARM-MESIHVISIKELSEQECW 339 (673)
Q Consensus 304 ~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~~ 339 (673)
..++.+|++|.+.+ +... ..-...+.+.+++.++..
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~ 206 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVI 206 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHH
Confidence 56777777777653 3222 233667889988887753
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00042 Score=74.77 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=86.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc------------------cc-ccCCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD------------------VF-EYFDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~F~~ 229 (673)
.+++|-+.-++.|.+.+..+. -...+-++|+.|+||||+|+.+.+... +. ..+.-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 578999999988888876543 134788999999999999988865210 00 01112
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKI 309 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~i 309 (673)
++.+..+....+.+ .++|++.... .-+.+++-++|+|++..-.....+.+...+....+.+++
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 23333332222222 1122221110 012345668999999655555677788888776667777
Q ss_pred EEEcCC-hhHHHhc-cccceeecCCCCccc
Q 005860 310 LVTTRK-ETVARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 310 ivTtr~-~~v~~~~-~~~~~~~l~~L~~~~ 337 (673)
|++|.+ ..+...+ .-...+++++++.++
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~e 179 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDK 179 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHH
Confidence 766643 3443322 235677788777665
No 106
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.57 E-value=0.00015 Score=68.77 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=34.9
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-++|||.+.-++.+.-++...... .+.+.-+-+||++|+||||||..+.+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r--~~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKR--GEALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCT--TS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhc--CCCcceEEEECCCccchhHHHHHHHhc
Confidence 368999999888876655322100 134778999999999999999999996
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.56 E-value=0.00034 Score=68.71 Aligned_cols=110 Identities=18% Similarity=0.191 Sum_probs=59.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
...+.|+|..|+|||+||+++++... ... ....+++...... . + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hhc-cc
Confidence 45788999999999999999998521 112 2345554433110 0 0 011 22
Q ss_pred eEEEEEcCCCCCCccchhhhhhhccC-CCCCe-EEEEEcCChhHHH--------hccccceeecCCCCccc
Q 005860 277 KFLLILDDMWTDDYSKWEPFHYCLKN-GVRGS-KILVTTRKETVAR--------MMESIHVISIKELSEQE 337 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~ 337 (673)
.-+||+||+..-+...-+.+...+.. ...|. .||+|++...... .+.....++++++++++
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 34788999943222222334443432 12344 3666666432111 22224678899999765
No 108
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.55 E-value=0.00075 Score=71.32 Aligned_cols=145 Identities=13% Similarity=0.166 Sum_probs=80.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc--------------------ccCC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF--------------------EYFD 228 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~ 228 (673)
.+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+...-. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 478999999999999886543 24578899999999999997776531100 1222
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 229 KRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 229 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
. +++.-+...... -.+++++.+... -..+++-++|+|++..-.....+.+...+......+.
T Consensus 88 ~-~~~~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 V-IEIDAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred E-EEeeccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 2 222211111111 111222221110 1224455888999843333456667777765555677
Q ss_pred EEEEcCChh-HHHh-ccccceeecCCCCccc
Q 005860 309 ILVTTRKET-VARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 309 iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~ 337 (673)
+|++|.+.. +... ......+++.+++.++
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~ 180 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLED 180 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHH
Confidence 777765543 2222 1224566777766655
No 109
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=8.8e-05 Score=77.22 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=61.2
Q ss_pred ceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeecccccccccc-chhhhcccccc
Q 005860 493 KLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVN-STNKILKGIEK 571 (673)
Q Consensus 493 ~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~lp~~i~~ 571 (673)
.+.++.+..+....+| . -..+|++|.+.++... ..+|..+ ..+|+.|++++ | .+..+|+++.
T Consensus 53 ~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~-------Cs~L~sLP~sLe- 115 (426)
T PRK15386 53 ASGRLYIKDCDIESLP-V--LPNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCH-------CPEISGLPESVR- 115 (426)
T ss_pred CCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCc----ccCCchh--hhhhhheEccC-------cccccccccccc-
Confidence 3455666655444444 1 1235666666654321 1122222 13566677766 5 3555655433
Q ss_pred ccccccceecCCC---CcccchhhhcC------------------CCccEEEeccCCCCccccccccccccCCeeecccc
Q 005860 572 LIHLRYLRLVGLG---TEELPETCCEL------------------LNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDS 630 (673)
Q Consensus 572 L~~Lr~L~L~~~~---i~~LP~~i~~L------------------~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~ 630 (673)
.|++.++. +..||+++..| .+|++|++++|..+ .+|..+- .+|++|.++.+
T Consensus 116 -----~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 -----SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred -----eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 33333322 56666666555 37899999998844 4565443 47888886554
No 110
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00054 Score=71.35 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=90.8
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc--ccCCeEEEEEcCCcccHHHH
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF--EYFDKRMWVCVSDPFDELRI 244 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~ 244 (673)
....++|-+...+.+...+..+. -...+.|+|+.|+||||+|..+.+..--. ..+.... ....+.....
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~ 91 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPV 91 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHH
Confidence 34679999999999999986554 24568899999999999998777642110 0011110 0001111112
Q ss_pred HHHHHHH-------hhCC--C-----CCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCCCC
Q 005860 245 AKAIIEA-------LEGF--V-----PTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVR 305 (673)
Q Consensus 245 ~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 305 (673)
.+.|... +..+ . ......++.. .+.+.+ .+++-++|+|++..-+....+.+...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2222221 1000 0 0112234433 333333 35667999999966666667777777766545
Q ss_pred CeEEEEEcCCh-hHHHhc-cccceeecCCCCcccc
Q 005860 306 GSKILVTTRKE-TVARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 306 gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
...+|++|... .+.... .-...+++.+++.++.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~ 205 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDEL 205 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHH
Confidence 55555555433 332222 2256888888888764
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.51 E-value=0.001 Score=63.17 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=38.3
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHhc-cccceeecCCCCccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~ 337 (673)
+.+-++|+||+..-.....+.+...+......+.+|++|++. .+...+ .....+++.+++.++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~ 159 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEA 159 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHH
Confidence 456689999995555556777887777666667777777643 222211 123456666665443
No 112
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=5.7e-05 Score=70.10 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.1
Q ss_pred EEEEEccCCChHHHHHHHHhcCcccc-ccCCeEEE
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVF-EYFDKRMW 232 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 232 (673)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999975543 46777775
No 113
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.48 E-value=8.5e-05 Score=76.04 Aligned_cols=194 Identities=23% Similarity=0.239 Sum_probs=126.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
..+.+.++|.|||||||++-.+.. +...| +.++++....-.++..+.-.+...++....+. +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 468899999999999999987776 45667 66778877777777777777777777654332 223456677778
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeecCCCCccccc---------------
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISIKELSEQECW--------------- 339 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~--------------- 339 (673)
++|.++|+||.-+- ..+-..+...+..+...-.|+.|+|.... ......+.+.+|+..+.-
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998211 11222333444455556678888886432 244566777777776511
Q ss_pred ----------------cCCchhhHHHHhhhhccCCCHHHHHHHHhhhcccch-------hhhhccchhhhhcccCCChhh
Q 005860 340 ----------------CKGLPLAAKTIGSLLRFKRTREEWESILDSELWQLE-------EFEKGLLAPLLLSYNDLPPMI 396 (673)
Q Consensus 340 ----------------c~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~~ 396 (673)
.+|.|++|...++..+.- ...+-.+.++.....+. .-.....+.+.+||.-|....
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 689999999999888644 34444444433221111 122456778889998887655
Q ss_pred hhhh
Q 005860 397 KRCF 400 (673)
Q Consensus 397 k~cf 400 (673)
+--|
T Consensus 242 ~~~~ 245 (414)
T COG3903 242 RALF 245 (414)
T ss_pred HHHh
Confidence 4444
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.00069 Score=75.36 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCC--eEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD--KRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~ 246 (673)
.+++|.+..++.|.+.+..+. -..-+-++|+.|+||||+|+.+.+...-..... ...+- .+..-.-.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHH
Confidence 579999999999999886554 234688999999999999998887421111110 00000 000001111
Q ss_pred HHHHHhhCC-----CCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc-CCh
Q 005860 247 AIIEALEGF-----VPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT-RKE 316 (673)
Q Consensus 247 ~i~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 316 (673)
.|...-... .......+++.+.+... ..+++-++|+|++..-+....+.|...+.....++++|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 111111000 00111223322221111 23455579999996555556777777777666677776655 333
Q ss_pred hHHHhc-cccceeecCCCCcccc
Q 005860 317 TVARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 317 ~v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
.+...+ .-...+++..++.++.
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el 196 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVL 196 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHH
Confidence 333222 2356788888887663
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0009 Score=73.77 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=82.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc-------------------cCCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE-------------------YFDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~ 229 (673)
.+++|-+.-++.+.+++.... -...+.++|+.|+||||+|+.+.+...-.. .|.-
T Consensus 16 ~divGq~~v~~~L~~~i~~~~------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 478999999999999887544 134678999999999999988876421110 0111
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCC
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVR 305 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 305 (673)
.+++..+.. ...+++...+.. -..+++-++|+|++..-.....+.+...+.....
T Consensus 90 ~~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 90 LIEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eeEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 122221111 112222211111 1235667899999965554556777777776556
Q ss_pred CeEEEEEcCCh-hHHH-hccccceeecCCCCccc
Q 005860 306 GSKILVTTRKE-TVAR-MMESIHVISIKELSEQE 337 (673)
Q Consensus 306 gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~ 337 (673)
.+.+|++|.+. .+.. ...-...+++++++.++
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~ 182 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPL 182 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHH
Confidence 66666666443 2221 11224566777776655
No 116
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.9e-05 Score=78.33 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=37.5
Q ss_pred CCccceeeeccccccccccchhhhc--cccccccccccceecCCCCccc--chh-----hhcCCCccEEEeccCCCCccc
Q 005860 542 LKCLRALRIATLMNTWDVNSTNKIL--KGIEKLIHLRYLRLVGLGTEEL--PET-----CCELLNLQVLEIEQCTSLKRL 612 (673)
Q Consensus 542 l~~L~~L~L~~~~~~~~~~~~~~lp--~~i~~L~~Lr~L~L~~~~i~~L--P~~-----i~~L~~L~~L~l~~c~~l~~l 612 (673)
++.|+.|||++ +.+-.++ ..++.|+.|+-|+++.|.+.++ |+. ...+++|++|+++.++ +.+.
T Consensus 245 ~~~L~~LdLs~-------N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w 316 (505)
T KOG3207|consen 245 LQTLQELDLSN-------NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDW 316 (505)
T ss_pred hhHHhhccccC-------CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccc
Confidence 34455555555 4443333 3455555555555555554333 221 1234555555555533 4444
Q ss_pred cc--cccccccCCeeeccccc
Q 005860 613 PL--GIGKLVNLRHLTYDDSC 631 (673)
Q Consensus 613 P~--~i~~L~~Lr~L~l~~~~ 631 (673)
|. .+..+.+|++|...++.
T Consensus 317 ~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccchhhccchhhhhhccccc
Confidence 42 23344444555444433
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=97.44 E-value=0.00055 Score=67.36 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=53.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
...+.|+|..|+|||.|++++++. ....-..++|++..+ +... ...+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR------------------GPELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh------------------hHHHHHhhhhC
Confidence 356899999999999999999874 222224567776432 2111 01222223322
Q ss_pred eEEEEEcCCCCC-Cccchhh-hhhhccC-CCCCeEEEEEcCC
Q 005860 277 KFLLILDDMWTD-DYSKWEP-FHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 277 r~LlVLDdvw~~-~~~~~~~-l~~~l~~-~~~gs~iivTtr~ 315 (673)
. +||+||+... ....|.. +...+.. ...|..||+||+.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 2 6789999432 1234543 4333332 2346678888874
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.001 Score=74.13 Aligned_cols=164 Identities=13% Similarity=0.190 Sum_probs=86.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE-cCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC-VSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~ 247 (673)
.+++|-+..+..|.+.+..+. -...+.++|+.|+||||+|+.+.+...-...++.-.|.. +...+..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 578999999999999886543 134588999999999999987776421111110000110 0011111111111
Q ss_pred HHHHhhCC-----CCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc-CChh
Q 005860 248 IIEALEGF-----VPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT-RKET 317 (673)
Q Consensus 248 i~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 317 (673)
+...-... .......+++...+... ..+.+-++|+|++..-.....+.|...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11100000 00111123333222221 23455578999996555556777887777665566665555 4344
Q ss_pred HHHh-ccccceeecCCCCcccc
Q 005860 318 VARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
+... ......+++.+++.++.
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei 191 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEI 191 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHH
Confidence 4332 23367788888887763
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.00085 Score=77.26 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=87.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...... ..+..-.-.+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHH
Confidence 478999999999999987544 2346789999999999999888774211111100 000000001111
Q ss_pred HHH-------hhCCCCCcCcHHHHHH---HHH-HHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-h
Q 005860 249 IEA-------LEGFVPTVGELNSLLE---SIR-ASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-E 316 (673)
Q Consensus 249 ~~~-------l~~~~~~~~~~~~~~~---~l~-~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~ 316 (673)
... +.........++++.. .+. .-..++.-++|||++..-....++.|...+......+.+|++|.+ .
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 100 0000000111222222 111 112355567889999766666788888888876666666665543 3
Q ss_pred hHHHhc-cccceeecCCCCcccc
Q 005860 317 TVARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 317 ~v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
.+...+ .-...|++..++.++-
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l 184 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVM 184 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHH
Confidence 444332 3367788888877664
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00098 Score=73.59 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=84.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|-+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+..--....+. ..++.-...+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHH
Confidence 478999988888888886543 2357889999999999999888875221110000 001110111111
Q ss_pred HHHhhCC-----CCCcCcHHHHH---HHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEALEGF-----VPTVGELNSLL---ESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~l~~~-----~~~~~~~~~~~---~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
....... ......+++.. ..+.. -..+++-+||+|++..-.....+.|...+........+|++|.+ ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1100000 00001112211 11111 12456678999999555555667777777654445666665554 333
Q ss_pred HHh-ccccceeecCCCCcccc
Q 005860 319 ARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~ 338 (673)
... ..-...+++++++.++.
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL 183 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGL 183 (624)
T ss_pred hHHHHhhhhccccCCCCHHHH
Confidence 322 22245778888887764
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0013 Score=72.71 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=87.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-....+. ..++.-...+.|
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHh
Confidence 579999999999999986543 2346789999999999999888874211111000 000000011111
Q ss_pred HHH---------hhC-CCCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc-CCh
Q 005860 249 IEA---------LEG-FVPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT-RKE 316 (673)
Q Consensus 249 ~~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 316 (673)
... +.. .....++..++.+.+... ..+++-++|+|++..-.....+.|...+........+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 100 000 000111222222222211 23455688999997666667788888887665566666555 444
Q ss_pred hHHHh-ccccceeecCCCCcccc
Q 005860 317 TVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 317 ~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
.+... ..-...+++..++.++.
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i 182 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTM 182 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHH
Confidence 44432 22356788888887663
No 122
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=1.1e-05 Score=69.21 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=84.8
Q ss_pred ccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhcccccccc-ccccceecCCCCcccchhhhc
Q 005860 516 NLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLI-HLRYLRLVGLGTEELPETCCE 594 (673)
Q Consensus 516 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~LP~~i~~ 594 (673)
.+..+.++++.. .........+.....|...+|++ +.+..+|+.+.... .+..|+|.+|.|.++|..+..
T Consensus 28 E~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~-------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aa 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSD-------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAA 98 (177)
T ss_pred Hhhhcccccchh--hHHHHHHHHHhCCceEEEEeccc-------chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhh
Confidence 344556666542 11112233345556777788888 88888888776554 788999999999999998999
Q ss_pred CCCccEEEeccCCCCccccccccccccCCeeecccccccccccc
Q 005860 595 LLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKG 638 (673)
Q Consensus 595 L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~ 638 (673)
++.|+.|+++.++ +...|.-|..|.+|-.|+..++.+..+|-.
T Consensus 99 m~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 99 MPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999999866 888998888899999999888887777744
No 123
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.00091 Score=65.32 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=73.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE--c--CC-----cc
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC--V--SD-----PF 239 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--v--s~-----~~ 239 (673)
..+.++......++.+|.. ..+|.+.|.+|.|||+||.++..+.-....|+.++.+. + .+ +.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 4577888888888888853 23899999999999999988766421123454433331 1 11 11
Q ss_pred cHH----HHHHHHHHHhhCCCCCcCcHHHHHH--------HHHHHhCCCeE---EEEEcCCCCCCccchhhhhhhccCCC
Q 005860 240 DEL----RIAKAIIEALEGFVPTVGELNSLLE--------SIRASLVGKKF---LLILDDMWTDDYSKWEPFHYCLKNGV 304 (673)
Q Consensus 240 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVLDdvw~~~~~~~~~l~~~l~~~~ 304 (673)
+.. ..+..+.+.+..--. ....+.... .-..+++++.+ +||+|...+-+..+ +...+...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~---~k~~ltR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQ---MKMFLTRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHH---HHHHHhhcC
Confidence 221 122223332221100 011111100 01235566655 99999996655433 444455557
Q ss_pred CCeEEEEEcC
Q 005860 305 RGSKILVTTR 314 (673)
Q Consensus 305 ~gs~iivTtr 314 (673)
.+|++|+|=-
T Consensus 202 ~~sk~v~~GD 211 (262)
T PRK10536 202 ENVTVIVNGD 211 (262)
T ss_pred CCCEEEEeCC
Confidence 8999998754
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.39 E-value=0.00069 Score=78.22 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=37.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++++++..|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999886554 223568999999999999988874
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.38 E-value=0.00049 Score=74.32 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=59.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.-+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... .....+++.++. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-C
Confidence 458899999999999999999842111111234555 34557777777665311 112334444443 3
Q ss_pred EEEEEcCCCCCCc-cch-hhhhhhccC-CCCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDY-SKW-EPFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~ 315 (673)
-+|||||+..... ..+ +.+...+.. ...|..||+|+..
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 4788999944221 122 334333332 2345578888763
No 126
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00014 Score=75.77 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=37.2
Q ss_pred hhCCccceeeeccccccccccchhhhccccccccccccceecCCC-CcccchhhhcCCCccEEEeccCCCCcccccc
Q 005860 540 DQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLG-TEELPETCCELLNLQVLEIEQCTSLKRLPLG 615 (673)
Q Consensus 540 ~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~~ 615 (673)
..++.++.|++++ |.+..+|. + ..+|+.|.+++|. ++.+|..+. .+|++|++++|+++..+|.+
T Consensus 49 ~~~~~l~~L~Is~-------c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKD-------CDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCC-------CCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 3446666666666 55555552 1 1246666666655 666665442 46666667666556666643
No 127
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=5.8e-05 Score=64.99 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=68.2
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchhhh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCC 593 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~ 593 (673)
...|....+++|.+ ..+++++-..++.+..|++++ +.+..+|..+..++.||.|+++.|.+...|.-|.
T Consensus 52 ~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~-------neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLAN-------NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred CceEEEEecccchh----hhCCHHHhhccchhhhhhcch-------hhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 34555667777763 344445555666788888888 8888888888888888888888888888888888
Q ss_pred cCCCccEEEeccCCCCcccccc
Q 005860 594 ELLNLQVLEIEQCTSLKRLPLG 615 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~~lP~~ 615 (673)
.|.+|-.|+..++. +.++|-+
T Consensus 121 ~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhHHHhcCCCCc-cccCcHH
Confidence 88888888888754 7777765
No 128
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.35 E-value=0.0003 Score=68.32 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV 235 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 235 (673)
-.++|+|..|+|||||+..+..+ ....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35789999999999999888875 6778877666643
No 129
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0014 Score=69.44 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=79.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc------cccCCeEE-EEEcCCcccH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV------FEYFDKRM-WVCVSDPFDE 241 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~ 241 (673)
++++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+...- ...|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH
Confidence 578999999999999886543 2458889999999999999888774211 01121111 1111111111
Q ss_pred HHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC-ChhHHH
Q 005860 242 LRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR-KETVAR 320 (673)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~ 320 (673)
. ..+++++.+.. .-..+++-+|++|++..-....++.+...+......+.+|++|. ...+..
T Consensus 91 ~-~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 D-DIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred H-HHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1 11111211110 01124455799999844333456666666655444555655553 322222
Q ss_pred -hccccceeecCCCCccc
Q 005860 321 -MMESIHVISIKELSEQE 337 (673)
Q Consensus 321 -~~~~~~~~~l~~L~~~~ 337 (673)
.......++.+++++++
T Consensus 154 ~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 154 TILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHhcceeEecCCccHHH
Confidence 12224467777776655
No 130
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0013 Score=69.89 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=71.2
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeE
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKF 278 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 278 (673)
++.|+|+-++||||+++.+.... .+. .+++..-+......-+.+. ...+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 99999999999999997766642 111 5565433321111111111 1111111122788
Q ss_pred EEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHh-----c-cccceeecCCCCcccc
Q 005860 279 LLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARM-----M-ESIHVISIKELSEQEC 338 (673)
Q Consensus 279 LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-----~-~~~~~~~l~~L~~~~~ 338 (673)
+|+||.| .....|+.....+.+.++. +|++|+-+..+... . |-...+++-||+-.|.
T Consensus 97 yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 97 YIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred eEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 9999999 4456798877777776665 88888876554332 1 2256778888887776
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.00079 Score=72.49 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=66.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
..-+.|+|+.|+|||+|++++.+. +......+++++ ...+...+...+... . ...++..+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHccc-
Confidence 346789999999999999999995 322233456664 334445555554321 1 1234444433
Q ss_pred eEEEEEcCCCCCCccch--hhhhhhccC-CCCCeEEEEEcCC-hh--------HHHhccccceeecCCCCccc
Q 005860 277 KFLLILDDMWTDDYSKW--EPFHYCLKN-GVRGSKILVTTRK-ET--------VARMMESIHVISIKELSEQE 337 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~-~~--------v~~~~~~~~~~~l~~L~~~~ 337 (673)
.-+|++||+.......+ +.+...+.. ...|..||+||.. .. +...+.....+++++++.++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 44788899844221111 223322221 1235578888754 21 12222334566777766554
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.31 E-value=0.001 Score=77.42 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=37.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~-------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR-------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC-------cCceeEECCCCCCHHHHHHHHHHH
Confidence 578999999999999886654 223469999999999999988874
No 133
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0099 Score=66.93 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=76.6
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccC---CeEEEEEcCCcccHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF---DKRMWVCVSDPFDELR 243 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 243 (673)
..++|-+..++.+.+.+.....+ ..+.++.+...+|+.|||||-||+++... -| +..+-+ |+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chHH
Confidence 46899999988888877433210 01345778889999999999999888773 34 233333 3333
Q ss_pred HHH-HHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeE-EEEEcCCCCCCccchhhhhhhccCC
Q 005860 244 IAK-AIIEALEGFVPTVGELNSLLESIRASLVGKKF-LLILDDMWTDDYSKWEPFHYCLKNG 303 (673)
Q Consensus 244 ~~~-~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdvw~~~~~~~~~l~~~l~~~ 303 (673)
... .=...|-+..+.--..++ -..+-+..+.++| +|.||+|...+++..+.+...+.++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 222 222333333222111111 2345666777888 7889999777777788887777754
No 134
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.0007 Score=67.60 Aligned_cols=99 Identities=23% Similarity=0.153 Sum_probs=54.3
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeE
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKF 278 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 278 (673)
-+.|+|++|+|||.||.++.+. .......++|+++ .+++..+...... ...... .+.+. +-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~~-----~~~~~~----l~~l~-~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARRE-----LQLESA----IAKLD-KFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHhC-----CcHHHH----HHHHh-cCC
Confidence 4899999999999999999885 3233345666643 3455555333211 122221 22222 334
Q ss_pred EEEEcCCCCCCccchh--hhhhhccCCCCCeEEEEEcCC
Q 005860 279 LLILDDMWTDDYSKWE--PFHYCLKNGVRGSKILVTTRK 315 (673)
Q Consensus 279 LlVLDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtr~ 315 (673)
||||||+-......|. .+...+.....+..+||||..
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999999543333332 233333321112358888874
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0021 Score=72.05 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=86.7
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc---------------------ccccC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD---------------------VFEYF 227 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F 227 (673)
++++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+... ...+|
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 579999999999999986543 245688999999999999977666311 01133
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCe
Q 005860 228 DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGS 307 (673)
Q Consensus 228 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs 307 (673)
+.. .+..+....+.++ +++++++... -..+++=++|+|++..-+...++.|...+.....++
T Consensus 91 n~~-~ld~~~~~~vd~I-r~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 91 NIH-ELDAASNNSVDDI-RNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred ceE-EecccccCCHHHH-HHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 321 2222211111111 1111111110 012345578999986555566788888887766667
Q ss_pred EEEEEc-CChhHHHh-ccccceeecCCCCcccc
Q 005860 308 KILVTT-RKETVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 308 ~iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
.+|++| ....+... ..-...+++++++.++.
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei 185 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADI 185 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHH
Confidence 766555 44444432 23367788888888764
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.22 E-value=0.002 Score=69.19 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=55.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccC--CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYF--DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
...+.|+|..|+|||+|++++++. +.... ..++|++ ..++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 346889999999999999999996 33332 2356664 334455555555432 122 2333333
Q ss_pred CCeEEEEEcCCCCCCcc-ch-hhhhhhccC-CCCCeEEEEEcCC
Q 005860 275 GKKFLLILDDMWTDDYS-KW-EPFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~ 315 (673)
+ .-+|||||+...... .+ +.+...+.. ...|..+|+||..
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 3 238889999532111 11 223333322 1235567787764
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.20 E-value=0.0041 Score=63.10 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+.++|++|+||||+|+.+++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999774
No 138
>PRK09183 transposase/IS protein; Provisional
Probab=97.19 E-value=0.00098 Score=66.55 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=52.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
..+.|+|++|+|||+||..+..... ... ..+.|+. ..++...+...... .. +...+...+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G-~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAG-IKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcC-CeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4577999999999999999976421 122 2344553 23343333322111 11 112222222 345
Q ss_pred EEEEEcCCCCCCccchh--hhhhhccC-CCCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDYSKWE--PFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 315 (673)
-++|+||+.......+. .+...+.. -..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999643333332 23333322 12354 7888863
No 139
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.0016 Score=64.00 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
...+.++|.+|+|||+||.++.+. ....-..++++++ .+++..+-...... ... ...+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~~---~~~----~~~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSNS---ETS----EEQLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhhc---ccc----HHHHHHHhc-c
Confidence 347899999999999999999996 3233345666643 44544444433211 111 122333344 3
Q ss_pred eEEEEEcCCCCCCccchhh--hhhhccCC-CCCeEEEEEcCC
Q 005860 277 KFLLILDDMWTDDYSKWEP--FHYCLKNG-VRGSKILVTTRK 315 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 315 (673)
.=+|||||+-......|.. +...+... ...-.+||||.-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889996655455653 22222211 223347777763
No 140
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.18 E-value=0.0052 Score=56.66 Aligned_cols=137 Identities=17% Similarity=0.122 Sum_probs=74.9
Q ss_pred echhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC----cccc--------------ccCCeEEEEE
Q 005860 173 GRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND----SDVF--------------EYFDKRMWVC 234 (673)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~ 234 (673)
|-+...+.|.+.+..+. -...+.++|..|+||+|+|..+.+. .... ....-..|+.
T Consensus 1 gq~~~~~~L~~~~~~~~------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcCC------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe
Confidence 44566677777775543 2346889999999999999666553 1110 1111222332
Q ss_pred cCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEE
Q 005860 235 VSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKI 309 (673)
Q Consensus 235 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~i 309 (673)
-.... .....++.. .+.+.+ .+++=++|+||+..-.....+.|...+.....++.+
T Consensus 75 ~~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 75 PDKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred ccccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 22110 011223322 222222 235568899999776777888899888888889999
Q ss_pred EEEcCChh-HHHh-ccccceeecCCCC
Q 005860 310 LVTTRKET-VARM-MESIHVISIKELS 334 (673)
Q Consensus 310 ivTtr~~~-v~~~-~~~~~~~~l~~L~ 334 (673)
|++|.+.. +... ..-...+.+++++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 99988754 3322 2224556665543
No 141
>PRK07261 topology modulation protein; Provisional
Probab=97.18 E-value=0.00093 Score=62.30 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=39.8
Q ss_pred EEEEEccCCChHHHHHHHHhcCcccc-ccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVF-EYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.|.|+|++|+||||||+.+.....+. -+.|...|-.... ..+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ---------------------ERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc---------------------cCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999987643221 2345555521111 1123344555566666666
Q ss_pred EEEEEcCCC
Q 005860 278 FLLILDDMW 286 (673)
Q Consensus 278 ~LlVLDdvw 286 (673)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6788874
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.17 E-value=0.00076 Score=65.03 Aligned_cols=124 Identities=22% Similarity=0.329 Sum_probs=71.0
Q ss_pred cccCCcceechhhHHHHHHHh---ccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH
Q 005860 165 LIDVSEIRGRDEEKSSLKSKL---LCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE 241 (673)
Q Consensus 165 ~~~~~~~vGr~~~~~~l~~~L---~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 241 (673)
++..++++|.|..++.|++-- ..+. ...-+.+||..|.|||+|++++.+...-.. .--|.|...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~------pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL------PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC------CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---
Confidence 344568999999888776532 2222 245677899999999999999988422111 112333221
Q ss_pred HHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCC---CCCe-EEEEEcCCh
Q 005860 242 LRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNG---VRGS-KILVTTRKE 316 (673)
Q Consensus 242 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~---~~gs-~iivTtr~~ 316 (673)
+..++..+...++. ...||+|++||+-.+ +...+..++..+..+ .+.. .|.+||-.+
T Consensus 90 ----------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 90 ----------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ----------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 12233333334432 357999999998432 233466676666532 2233 344455445
Q ss_pred hHH
Q 005860 317 TVA 319 (673)
Q Consensus 317 ~v~ 319 (673)
++.
T Consensus 152 HLv 154 (249)
T PF05673_consen 152 HLV 154 (249)
T ss_pred hcc
Confidence 443
No 143
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.0013 Score=64.91 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=56.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
..+.|+|..|+|||+||.++.+. +......++++++. +++..|-...... .... .+.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~----~~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGE----KFLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHH----HHHHHh-cCC
Confidence 56899999999999999999996 33444456777543 3444444333211 1111 222233 345
Q ss_pred EEEEEcCCCCCCccchhh--hhhhccCC-CCCeEEEEEcC
Q 005860 278 FLLILDDMWTDDYSKWEP--FHYCLKNG-VRGSKILVTTR 314 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr 314 (673)
=||||||+-......|.. +...+... .+.--+||||-
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 689999995443334532 33333321 22234677775
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0045 Score=67.50 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=80.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc---cc----------------cCCe
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV---FE----------------YFDK 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~ 229 (673)
.+++|-+..+..+.+.+.... -...+.++|+.|+||||+|+.+.....- .. .|..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 478999999999999986543 2346778999999999999887663110 00 0111
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
.+++..+..... ++...+...+.. -..+++-++|+|++..-.....+.+...+........
T Consensus 90 ~~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 90 LIEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 112211111111 111122222211 1235667999999955444456677777766555555
Q ss_pred EEEEc-CChhHHHh-ccccceeecCCCCccc
Q 005860 309 ILVTT-RKETVARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 309 iivTt-r~~~v~~~-~~~~~~~~l~~L~~~~ 337 (673)
+|++| +...+... ......+.+.+++.++
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~e 182 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQ 182 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHH
Confidence 55555 33333322 2224567777776655
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.00095 Score=74.86 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=84.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+.......+. -...++.-...+.|
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 579999999999988886543 235678999999999999998887421100000 00111111222333
Q ss_pred HHHhhCC-----CCCcCcHHHHHHHH---HH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEALEGF-----VPTVGELNSLLESI---RA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~l~~~-----~~~~~~~~~~~~~l---~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
....... .......+++.+.+ .. -..+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 2211110 00111222222211 11 11345668999999544445567777777665556677766644 333
Q ss_pred HHhc-cccceeecCCCCccc
Q 005860 319 ARMM-ESIHVISIKELSEQE 337 (673)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~~ 337 (673)
.... .....+.++.++..+
T Consensus 164 l~tI~SR~~~i~f~~l~~~e 183 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVAD 183 (585)
T ss_pred hHHHHhccceeeCCCCCHHH
Confidence 3221 224566677666654
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.16 E-value=0.001 Score=71.74 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=57.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcccccc-CC-eEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEY-FD-KRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG 275 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (673)
.-+.|+|..|+|||+||+++++. +... .. .++|++. .++..++...+... ..+ .+++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHh
Confidence 34899999999999999999996 3333 23 4567743 45666666665422 122 23333334
Q ss_pred CeEEEEEcCCCCCC-ccch-hhhhhhccC-CCCCeEEEEEcC
Q 005860 276 KKFLLILDDMWTDD-YSKW-EPFHYCLKN-GVRGSKILVTTR 314 (673)
Q Consensus 276 kr~LlVLDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr 314 (673)
+.-+|++||+.... ...+ +.+...+.. ...|..||+||.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 45589999995321 1111 123222221 123446888874
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0034 Score=70.55 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=84.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccccc-CCe-EEEEE---cCCcccHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY-FDK-RMWVC---VSDPFDELR 243 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~---vs~~~~~~~ 243 (673)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+..--... ... -|-.| ....++.-
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE-
Confidence 478999999999999886543 2456789999999999999888763111000 000 00000 00000000
Q ss_pred HHHHHHHHhhCC-CCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc-CChhHHH
Q 005860 244 IAKAIIEALEGF-VPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT-RKETVAR 320 (673)
Q Consensus 244 ~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~ 320 (673)
.+... .....++.++...+... ..+++-++|+|++..-....++.+...+........+|++| ....+..
T Consensus 91 -------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 -------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred -------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00000 00011122222222211 23566689999996555566777877776655555555444 4444433
Q ss_pred h-ccccceeecCCCCcccc
Q 005860 321 M-MESIHVISIKELSEQEC 338 (673)
Q Consensus 321 ~-~~~~~~~~l~~L~~~~~ 338 (673)
. ..-...+++.+++.++.
T Consensus 164 TI~SRcq~ieF~~L~~eeI 182 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEI 182 (725)
T ss_pred HHHhhceeEEccCCCHHHH
Confidence 2 23356788888887764
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.16 E-value=0.0021 Score=64.54 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=33.6
Q ss_pred cceechhhHHHHHHHhccC--------CcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 170 EIRGRDEEKSSLKSKLLCE--------SSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++|.+..++.|.+..... ..-...+...-+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 5889887776665432110 00000234567889999999999999999764
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0028 Score=70.87 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=83.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+.+..--....+. ..++.-.....|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHH
Confidence 579999999999999886543 2356789999999999999888774211111000 000000111111
Q ss_pred HHHh-------hCC-CCCcCcHHHHHHHHHHH-hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC-ChhH
Q 005860 249 IEAL-------EGF-VPTVGELNSLLESIRAS-LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR-KETV 318 (673)
Q Consensus 249 ~~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v 318 (673)
...- ... ....++..++...+... ..+++-++|+|++..-+....+.|...+......+.+|++|. ...+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 1000 000 00111122222222111 134555788999965555567778777776555666665554 3444
Q ss_pred HHh-ccccceeecCCCCccc
Q 005860 319 ARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~ 337 (673)
... ..-...+++++++.++
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~ 182 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQK 182 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHH
Confidence 332 2224566777776655
No 150
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.004 Score=67.98 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=85.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc--ccc----------------CCe-
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV--FEY----------------FDK- 229 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------F~~- 229 (673)
++++|-+..++.+...+..+. -..++.++|+.|+||||+|+.+.+..-- ... ++.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 579999999999999886543 2456789999999999999876653100 000 100
Q ss_pred EEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH----HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCC
Q 005860 230 RMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA----SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVR 305 (673)
Q Consensus 230 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~ 305 (673)
++.+..+... ..+++...+.. -..+++-++|+|++..-+....+.+...+.....
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1111111111 12222222221 1124566889999966665667778777776666
Q ss_pred CeEEEEEcCCh-hHHH-hccccceeecCCCCcccc
Q 005860 306 GSKILVTTRKE-TVAR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 306 gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~ 338 (673)
.+++|++|.+. .+.. ...-...+++.+++.++.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei 181 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSI 181 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHH
Confidence 77777777653 2221 112256788888887764
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.13 E-value=0.0019 Score=65.54 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=60.3
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeE
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKF 278 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~ 278 (673)
-+.++|++|+||||+|+.+.+...-.......-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 578999999999999977666321111111112444442 12 222222211 11122222222 235
Q ss_pred EEEEcCCCCC---------CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccc--------cceeecCCCCccc
Q 005860 279 LLILDDMWTD---------DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMES--------IHVISIKELSEQE 337 (673)
Q Consensus 279 LlVLDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~--------~~~~~l~~L~~~~ 337 (673)
+|+||++..- ....++.+...+.....+-+||+++.....-..... ...+++++++.+|
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 8899999421 011234444555455456677777654322221111 3457777777554
No 152
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.12 E-value=3.9e-05 Score=77.29 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=85.4
Q ss_pred cceeeeccccccccccchhhhcc-ccccccccccceecCCCCccc-chhhhcCCCccEEEeccCCCCccccc-ccccccc
Q 005860 545 LRALRIATLMNTWDVNSTNKILK-GIEKLIHLRYLRLVGLGTEEL-PETCCELLNLQVLEIEQCTSLKRLPL-GIGKLVN 621 (673)
Q Consensus 545 L~~L~L~~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~c~~l~~lP~-~i~~L~~ 621 (673)
-..++|.. +.+..+|+ .++.+.+||.|||+.|.|+.+ |..+..|.+|-+|-+-+.++|..+|. .|+.|..
T Consensus 69 tveirLdq-------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQ-------NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred ceEEEecc-------CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 45567777 88999976 588999999999999999888 78899999998888888677999997 4899999
Q ss_pred CCeeecccccccccccc-CCCCCCCCcCCeeEEc
Q 005860 622 LRHLTYDDSCLEFIPKG-IQRLTNLRTLSEFVVV 654 (673)
Q Consensus 622 Lr~L~l~~~~l~~lP~~-i~~L~~L~~L~~~~~~ 654 (673)
|+-|.+.-+.+.-++.. +..|++|..|..++-.
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence 99999887777766654 6778888777766653
No 153
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0017 Score=65.02 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=55.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccccc-CCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEY-FDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG 275 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (673)
..-+.++|..|+|||+||.++.+. +... -..++|++.. +++..+...+ +.... ..+.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~-~~~~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEA-KLNRMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHH-HHHHhc-
Confidence 456899999999999999999996 3333 3456777642 2333332221 11111 222232
Q ss_pred CeEEEEEcCCCC-----CCccchhh--hhhhccCC-CCCeEEEEEcCC
Q 005860 276 KKFLLILDDMWT-----DDYSKWEP--FHYCLKNG-VRGSKILVTTRK 315 (673)
Q Consensus 276 kr~LlVLDdvw~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 315 (673)
+-=||||||+.. +....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 345999999932 22234442 33333321 234457888863
No 154
>PRK06620 hypothetical protein; Validated
Probab=97.09 E-value=0.0012 Score=63.81 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.+.|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999998885
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.07 E-value=0.004 Score=71.24 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++.+++..|..... .-+.++|.+|+|||++|+.+.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-------~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-------NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-------CCeEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999998876431 22357999999999999998864
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0029 Score=68.40 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=80.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcccc---------------------ccC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVF---------------------EYF 227 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F 227 (673)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...-. .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 579999999999999886543 13567889999999999998876631100 011
Q ss_pred CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCC
Q 005860 228 DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRG 306 (673)
Q Consensus 228 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~g 306 (673)
+ .+++.-...... ++..++.+.+.. ...+++-++|+|++..-.....+.+...+......
T Consensus 91 d-~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 D-VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred c-eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1 111111011011 111111111111 12356668899998443444556677677665556
Q ss_pred eEEEEEcCC-hhHHHh-ccccceeecCCCCccc
Q 005860 307 SKILVTTRK-ETVARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 307 s~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~ 337 (673)
..+|++|.+ ..+... ......++++++++++
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~e 184 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEET 184 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHH
Confidence 666666643 323222 2225567888887765
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=0.00013 Score=79.01 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=53.2
Q ss_pred HhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccch-hhhcCCCccEEEeccCCCCccccccc
Q 005860 538 LFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPE-TCCELLNLQVLEIEQCTSLKRLPLGI 616 (673)
Q Consensus 538 ~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~c~~l~~lP~~i 616 (673)
.+.-++.|+.|+|+. |.+...- .+..+.+|+.|||+.|.+..+|. +.... .|+.|+++++. +.+|- +|
T Consensus 182 SLqll~ale~LnLsh-------Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gi 250 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSH-------NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GI 250 (1096)
T ss_pred HHHHHHHhhhhccch-------hhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hH
Confidence 344456666777777 6655544 56666777777777777666663 22222 37777777644 66554 66
Q ss_pred cccccCCeeecccccccc
Q 005860 617 GKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 617 ~~L~~Lr~L~l~~~~l~~ 634 (673)
.+|.+|++||++.|.+..
T Consensus 251 e~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred HhhhhhhccchhHhhhhc
Confidence 777777777776665543
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.05 E-value=0.0029 Score=68.99 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=55.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccC--CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYF--DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
..-+.|+|..|+|||+|++++.+. +...+ ..++|++. .++...+...+... .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHHh
Confidence 356899999999999999999996 43443 23556643 33444455544321 11 23333444
Q ss_pred CCeEEEEEcCCCCCCccc-h-hhhhhhccC-CCCCeEEEEEcCC
Q 005860 275 GKKFLLILDDMWTDDYSK-W-EPFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~ 315 (673)
+ .-+|||||+....... + +.+...+.. ...|..||+||..
T Consensus 211 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 211 S-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred c-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 2 4489999994321111 1 223332221 1234568887764
No 159
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.04 E-value=0.0014 Score=69.61 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=38.8
Q ss_pred CcceechhhHHHHHHHhccCCcc------cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE------EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|+++.++++.+.+...-.. -+....+-|.++|++|+|||++|+++++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 57899999999998876332100 00133566899999999999999999985
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.04 E-value=0.0027 Score=74.49 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=77.1
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|.+..++.+...+.....+ .......++.++|+.|+|||++|+.+... ....-...+.+..+.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999888653210 00123467889999999999999999874 211122344444443222111
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCC-CeEEEEEcCCCCCCccchhhhhhhccCC----C-------CCeEEEEEcC
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVG-KKFLLILDDMWTDDYSKWEPFHYCLKNG----V-------RGSKILVTTR 314 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~~~~~~~~~l~~~l~~~----~-------~gs~iivTtr 314 (673)
...+.+..+.....++ ...+.+.++. ...+|+||++..-+...++.+...+..+ + ..+-||+||.
T Consensus 640 --~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 1122121111111100 1122233322 3348999999777777777777776543 1 2334777776
Q ss_pred C
Q 005860 315 K 315 (673)
Q Consensus 315 ~ 315 (673)
-
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 3
No 161
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.00092 Score=66.36 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=51.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.-+.|+|++|+|||+||.++.... ....+ .+.|+ +..++...+..... .... ...+.. + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----AGRL---QAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHH-h-ccC
Confidence 458999999999999999988752 12222 33443 33344444433211 1111 122322 2 234
Q ss_pred EEEEEcCCCCCCccchh--hhhhhccC-CCCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDYSKWE--PFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~ 315 (673)
-+|||||+.......+. .+...+.. ...++ +|+||..
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 58999999533222222 23333322 22344 8888874
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.01 E-value=0.0015 Score=76.51 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||++++++++..|.... ..-+.++|++|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997654 223469999999999999888774
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.005 Score=67.84 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=67.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccC--CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYF--DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG 275 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (673)
..+.|+|..|+|||.|++++++. ....+ -.++|++ ..++..++...+... . ...+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~----~~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----K----GDSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----c----HHHHHHHhhc
Confidence 34899999999999999999995 33222 2456664 334455555444321 1 1223334433
Q ss_pred CeEEEEEcCCCCCCc-cchh-hhhhhccC-CCCCeEEEEEcCCh---------hHHHhccccceeecCCCCccc
Q 005860 276 KKFLLILDDMWTDDY-SKWE-PFHYCLKN-GVRGSKILVTTRKE---------TVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 276 kr~LlVLDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~ 337 (673)
-=+|||||+..... ..|. .+...+.. ...|..|||||... .+...+...-+++++..+.+.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 24788999954322 1222 23333322 13355688888752 222333445667777776554
No 164
>PF14516 AAA_35: AAA-like domain
Probab=96.98 E-value=0.0063 Score=63.24 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=105.6
Q ss_pred cccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-----c
Q 005860 165 LIDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-----F 239 (673)
Q Consensus 165 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~ 239 (673)
+.+.+.+|+|...-+++.+.|..+. ..+.|.|+-.+|||||...+.+..+- ..+ .++++++..- .
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G--------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~ 76 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG--------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFS 76 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC--------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccC
Confidence 3455678899977777777775533 57999999999999999888875322 233 4567776542 2
Q ss_pred cHHHHHHHHHHHhhCC----CC-------CcCcHHHHHHHHHHHh---CCCeEEEEEcCCCCCC--ccchhhhhhhccC-
Q 005860 240 DELRIAKAIIEALEGF----VP-------TVGELNSLLESIRASL---VGKKFLLILDDMWTDD--YSKWEPFHYCLKN- 302 (673)
Q Consensus 240 ~~~~~~~~i~~~l~~~----~~-------~~~~~~~~~~~l~~~l---~~kr~LlVLDdvw~~~--~~~~~~l~~~l~~- 302 (673)
+...+++.++..+... .. ...........+.+.+ .+++.+|+||+|..-- ....+++...+..
T Consensus 77 ~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~ 156 (331)
T PF14516_consen 77 DLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSW 156 (331)
T ss_pred CHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHH
Confidence 4555565555555432 11 1112223344454433 2689999999983211 1111223332221
Q ss_pred ---C----CCCeEEEEEcCChhH--H-Hh----ccccceeecCCCCccccc---------------------cCCchhhH
Q 005860 303 ---G----VRGSKILVTTRKETV--A-RM----MESIHVISIKELSEQECW---------------------CKGLPLAA 347 (673)
Q Consensus 303 ---~----~~gs~iivTtr~~~v--~-~~----~~~~~~~~l~~L~~~~~~---------------------c~GlPLai 347 (673)
. ...+-.+|...+... . .. .+....++|++++.+|.. ++|+|.-+
T Consensus 157 ~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 157 YEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred HHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHH
Confidence 0 011222222222111 1 11 122456788888888864 99999999
Q ss_pred HHHhhhhccC
Q 005860 348 KTIGSLLRFK 357 (673)
Q Consensus 348 ~~~~~~L~~~ 357 (673)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999653
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.97 E-value=0.014 Score=67.38 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.+.+|.+.-+++|+++|....... .....++.++|++|+||||+|+.+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~-~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVN-KIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcc-cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999998886322100 123457999999999999999999974
No 166
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.96 E-value=0.003 Score=61.97 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRI 244 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 244 (673)
..-.++.|+|.+|+|||++|.++... ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34679999999999999999777764 32334678899887 5555443
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.95 E-value=0.0038 Score=73.09 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=68.6
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|.+..++.+...+.....+ ..+....++.++|+.|+|||+||+.+.+. ....-...+.+..+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-----~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-----K 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-----h
Confidence 46899999998888887542100 00123457899999999999999999874 211112334444432111 1
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCC-CeEEEEEcCCCCCCccchhhhhhhccC
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVG-KKFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.....+.+..+.....+. ...+.+.++. ..-+|+||++..-+...++.+...+..
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 112222222211111111 1122333322 235899999966666677777766654
No 168
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.95 E-value=0.00028 Score=76.06 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=60.9
Q ss_pred cccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccch
Q 005860 511 IFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPE 590 (673)
Q Consensus 511 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~ 590 (673)
+..+.+|..|.+.++.+ ..+...+..+.+|++|++++ +.+..+. .+..+..|+.|++++|.|..++.
T Consensus 91 l~~~~~l~~l~l~~n~i-----~~i~~~l~~~~~L~~L~ls~-------N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI-----EKIENLLSSLVNLQVLDLSF-------NKITKLE-GLSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred cccccceeeeeccccch-----hhcccchhhhhcchheeccc-------ccccccc-chhhccchhhheeccCcchhccC
Confidence 34455666666666542 11222244566666666666 6555542 35555556666666666665543
Q ss_pred hhhcCCCccEEEeccCCCCcccccc-ccccccCCeeecccccccc
Q 005860 591 TCCELLNLQVLEIEQCTSLKRLPLG-IGKLVNLRHLTYDDSCLEF 634 (673)
Q Consensus 591 ~i~~L~~L~~L~l~~c~~l~~lP~~-i~~L~~Lr~L~l~~~~l~~ 634 (673)
+..|++|+.++++++. +..++.. ...+.+|+.+++..|.+..
T Consensus 158 -~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred -CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence 3446666666666655 5555432 3556666666666655443
No 169
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.94 E-value=0.0022 Score=65.49 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=69.4
Q ss_pred echhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 173 GRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
++....+...+++..-.. ....+-+.|+|..|+|||.||.++++.. ...-..+.|++++ .++.++-...
T Consensus 135 ~~~~~~~~~~~fi~~~~~---~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP---GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhc---cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHH
Confidence 444444455555542211 0124568999999999999999999963 2222345677553 4555555554
Q ss_pred hCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhh--hhhhc-cCC-CCCeEEEEEcC
Q 005860 253 EGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEP--FHYCL-KNG-VRGSKILVTTR 314 (673)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr 314 (673)
... +..+ .+ +.+. +-=||||||+-.+....|.. +...+ ... ..+-.+|+||-
T Consensus 204 ~~~-----~~~~---~l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SDG-----SVKE---KI-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hcC-----cHHH---HH-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 321 1222 22 2232 45589999997666667753 44443 322 24556888886
No 170
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.007 Score=67.92 Aligned_cols=158 Identities=14% Similarity=0.206 Sum_probs=84.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+.+..--. .++.. ....+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR------IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC------CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHH
Confidence 478999999999999886543 13467899999999999999888752111 11000 00111111222222
Q ss_pred HHHhhCC-----CCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEALEGF-----VPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
....... .......+.+.+.+... ..+++-++|+|++..-....++.|...+........+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 2211110 00111222222222111 1345568899999655555677787777765555655555544 333
Q ss_pred HHh-ccccceeecCCCCccc
Q 005860 319 ARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~ 337 (673)
... ..-...+++..++.++
T Consensus 165 lpTIrSRc~~~~f~~l~~~e 184 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEA 184 (620)
T ss_pred hHHHHhheeEEEecCCCHHH
Confidence 322 2224566677776654
No 171
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.94 E-value=0.0024 Score=61.77 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..-.++.|+|.+|+|||++|.++... .......++|++... +++..+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 44689999999999999999776654 323456789998865 56555443
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.93 E-value=0.0015 Score=72.72 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=41.0
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++++|-+..++++..++.....+ ....+++.|+|++|+||||+++.+...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~--~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLE--NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccc--cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999998654321 123468999999999999999999985
No 173
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.90 E-value=0.0051 Score=60.33 Aligned_cols=88 Identities=18% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccC------CeEEEEEcCCcccHHHHHHHHHHHhhCCC---------CCc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF------DKRMWVCVSDPFDELRIAKAIIEALEGFV---------PTV 259 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~ 259 (673)
..-.++.|+|.+|+|||+||.++.-. ....- ..++|++....++...+. ++.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 34579999999999999999777653 11222 567899887777765543 3333322110 011
Q ss_pred CcHHHHHHHHHHHhC----CCeEEEEEcCC
Q 005860 260 GELNSLLESIRASLV----GKKFLLILDDM 285 (673)
Q Consensus 260 ~~~~~~~~~l~~~l~----~kr~LlVLDdv 285 (673)
.+.+++...+.+... .+.-|||+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 334444444444432 34558999987
No 174
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=7.2e-05 Score=80.93 Aligned_cols=131 Identities=18% Similarity=0.101 Sum_probs=92.5
Q ss_pred cCceEEEEEEcCCCCccccccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccc
Q 005860 491 QEKLRHSMLVLGYEASFPISIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIE 570 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~ 570 (673)
+.++-..+..++.......++.-++.|++|+++.|.+ .. . ..+..+..|+.|||+. |.+..+|..-.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~----~~-v-~~Lr~l~~LkhLDlsy-------N~L~~vp~l~~ 229 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF----TK-V-DNLRRLPKLKHLDLSY-------NCLRHVPQLSM 229 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh----hh-h-HHHHhccccccccccc-------chhccccccch
Confidence 3445555555555444444555577889999988863 11 1 2567888999999999 88877776433
Q ss_pred cccccccceecCCCCcccchhhhcCCCccEEEeccCCCCccccc--cccccccCCeeecccccccccc
Q 005860 571 KLIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQCTSLKRLPL--GIGKLVNLRHLTYDDSCLEFIP 636 (673)
Q Consensus 571 ~L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c~~l~~lP~--~i~~L~~Lr~L~l~~~~l~~lP 636 (673)
.=.+|..|+|++|.++.|- .|.+|++|+.||++++- +...-+ -+|.|..|+.|++.+|.+-.-|
T Consensus 230 ~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 230 VGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhheeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 3345899999999888885 48899999999999853 544321 3688888999999988876555
No 175
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0033 Score=64.92 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=63.5
Q ss_pred hHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc-cCCe-EEEEEcCCc-ccHHHHHHHHHHHhh
Q 005860 177 EKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE-YFDK-RMWVCVSDP-FDELRIAKAIIEALE 253 (673)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~ 253 (673)
-..++++.+..-. .-.-+.|+|..|+|||||++.+.+. +.. +-+. ++|+.+.+. .++.++.+.+...+.
T Consensus 119 ~~~RvID~l~PiG------kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 119 LSMRVVDLVAPIG------KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred hhHhhhhheeecC------CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 3455777765322 2345799999999999999998885 322 2244 466666654 467788888887776
Q ss_pred CCCCCcCcHH-----HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 254 GFVPTVGELN-----SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 254 ~~~~~~~~~~-----~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
....+..... .....+.+++ ++++++||+|++
T Consensus 191 ast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 191 ASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 5432222111 1122222222 589999999999
No 176
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.87 E-value=0.0071 Score=56.95 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE---cCCcccHHHH------HHHHHHHhhCCC------CCcCc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC---VSDPFDELRI------AKAIIEALEGFV------PTVGE 261 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~------~~~i~~~l~~~~------~~~~~ 261 (673)
-.+++|+|..|.|||||++.+.... ....+.+++. +.. .+.... ..++++.++... .....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3589999999999999999999852 3344555542 221 122111 112444444321 11112
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC-CCccchhhhhhhccCC-CC-CeEEEEEcCChhHHH
Q 005860 262 LNSLLESIRASLVGKKFLLILDDMWT-DDYSKWEPFHYCLKNG-VR-GSKILVTTRKETVAR 320 (673)
Q Consensus 262 ~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~ 320 (673)
-+...-.+...+-..+-++++|+--. -|....+.+...+... .. |..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22333445566677778999998732 1222333344444322 22 668899998876553
No 177
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.87 E-value=0.00075 Score=63.22 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=50.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.-+.|+|..|+|||.||.++.+. ...+=..+.|+.+ .+++..+ ..... ...... +.+.+.+ -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l----~~~~~-~~~~~~----~~~~l~~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDEL----KQSRS-DGSYEE----LLKRLKR-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHH----HCCHC-CTTHCH----HHHHHHT-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccc----ccccc-ccchhh----hcCcccc-c
Confidence 45999999999999999999885 2222234667743 3344443 32211 112222 2223332 3
Q ss_pred EEEEEcCCCCCCccchhh--hhhhccCC-CCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDYSKWEP--FHYCLKNG-VRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 315 (673)
=||||||+-......|.. +...+... .++ .+||||.-
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 478899996554444432 22222211 233 57778864
No 178
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.87 E-value=0.0052 Score=71.07 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=69.1
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|.+..++.+.+.+...... .......++.++|+.|+|||+||+.+... . +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc----
Confidence 46788888888888877532100 00123567899999999999999999884 2 2334555544422111
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCC-CeEEEEEcCCCCCCccchhhhhhhccC
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVG-KKFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.+...++... .....++ ...+.+.++. ..-+|+||++..-+...++.+...+..
T Consensus 525 ~~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 TVSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred cHHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1122222221 1101111 1123333333 345999999977666667777666654
No 179
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.00045 Score=62.07 Aligned_cols=89 Identities=22% Similarity=0.177 Sum_probs=48.0
Q ss_pred EEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEE
Q 005860 200 ITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFL 279 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~L 279 (673)
|.++|.+|+|||+||+.++.. . =....-+.++...+..++....--. ... .. .....+...++ +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~---~~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~-~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L---GRPVIRINCSSDTTEEDLIGSYDPS-NGQ-FE-FKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H---TCEEEEEE-TTTSTHHHHHCEEET--TTT-TC-EEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--h---hcceEEEEeccccccccceeeeeec-ccc-cc-ccccccccccc-----ceeE
Confidence 679999999999999999884 2 1233456777777777655422211 000 00 00000000011 7889
Q ss_pred EEEcCCCCCCccchhhhhhhcc
Q 005860 280 LILDDMWTDDYSKWEPFHYCLK 301 (673)
Q Consensus 280 lVLDdvw~~~~~~~~~l~~~l~ 301 (673)
+|||++...+...+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999995444444445544443
No 180
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.00087 Score=68.85 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=41.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.++.++++++++....... ...-++++++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~-~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGL-EERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999986543211 234689999999999999999999885
No 181
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.0066 Score=55.71 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE---c------------------CCc-----------------
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC---V------------------SDP----------------- 238 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---v------------------s~~----------------- 238 (673)
-..+.++|++|.|||||.+.+|..++. =.+.+|+. + -++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 468999999999999999999996443 22344431 0 011
Q ss_pred ----ccHHHHHHHHHHHh---hCCC------CCcCcHHHHHHHHHHHhCCCeEEEEEcCCC-C-CCccchhhhhhhccCC
Q 005860 239 ----FDELRIAKAIIEAL---EGFV------PTVGELNSLLESIRASLVGKKFLLILDDMW-T-DDYSKWEPFHYCLKNG 303 (673)
Q Consensus 239 ----~~~~~~~~~i~~~l---~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw-~-~~~~~~~~l~~~l~~~ 303 (673)
....++.+...+.+ +... .+...-++-.-.|.+.+-+++-+++=|.-- + +....|+-+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 11223333333332 2211 112222344556777788888899988431 1 2333565544333346
Q ss_pred CCCeEEEEEcCChhHHHhcc
Q 005860 304 VRGSKILVTTRKETVARMME 323 (673)
Q Consensus 304 ~~gs~iivTtr~~~v~~~~~ 323 (673)
..|+.||+.|.+.++.+.+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 77999999999999887764
No 182
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0022 Score=63.70 Aligned_cols=81 Identities=25% Similarity=0.276 Sum_probs=50.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
..-+.++|.+|+|||.||.++.+. +...--.+.|+++ .+++.++....... .....+.+.+. +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~~--------~~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDEG--------RLEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcC--------chHHHHHHHhh-c
Confidence 345899999999999999999996 3333345667754 34555555554331 11222333222 2
Q ss_pred eEEEEEcCCCCCCccchh
Q 005860 277 KFLLILDDMWTDDYSKWE 294 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~ 294 (673)
-=||||||+-......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 238999999665555554
No 183
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.0035 Score=73.11 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=74.0
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|.+..++.+.+.+...... .......++.++|+.|+|||.||+.+... .-......+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----h
Confidence 47899999999998887432100 00234568999999999999999887663 2111112222222221110 1
Q ss_pred HHHHHhhCCCC--CcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCC-----------CCeEEEEEc
Q 005860 247 AIIEALEGFVP--TVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGV-----------RGSKILVTT 313 (673)
Q Consensus 247 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 313 (673)
.+.+-++.... ...+...+...++ +...-+|+||++..-+...++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 11111222111 1111122233333 2455699999996666666777766665442 345566676
Q ss_pred C
Q 005860 314 R 314 (673)
Q Consensus 314 r 314 (673)
.
T Consensus 717 N 717 (852)
T TIGR03345 717 N 717 (852)
T ss_pred C
Confidence 5
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0033 Score=65.75 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=72.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCC--eEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFD--KRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
....+.|||..|.|||.|++++.+. ...... .++++ +.+....+++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHhh---------hHHHHHHhh
Confidence 3568999999999999999999996 444454 34444 3344455555544331 134455555
Q ss_pred CCCeEEEEEcCCCCCCc-cchh-hhhhhccC-CCCCeEEEEEcCCh---------hHHHhccccceeecCCCCccc
Q 005860 274 VGKKFLLILDDMWTDDY-SKWE-PFHYCLKN-GVRGSKILVTTRKE---------TVARMMESIHVISIKELSEQE 337 (673)
Q Consensus 274 ~~kr~LlVLDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~ 337 (673)
.-=++++||++.-.. +.|+ .+...+.. ...|-.||+|++.. .+...++..-++++.+++.+.
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 333888999954211 1222 23333332 23344899998632 233344556677777777654
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.83 E-value=0.00077 Score=58.84 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
||+|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 186
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.80 E-value=0.0041 Score=61.76 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=53.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL----- 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 262 (673)
-.-++|+|..|+||||||+.+++. ++.+| +.++++-+.+... +.++...+.+.=... ..+..-.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999996 55556 4566666766543 344555544321110 1111101
Q ss_pred HHHHHHHHHHh---CCCeEEEEEcCC
Q 005860 263 NSLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 263 ~~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
-...-.+.+++ +++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 11223344555 389999999999
No 187
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.80 E-value=0.0035 Score=73.60 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=36.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++.+++..|.... -.-+.++|.+|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999986644 233458999999999999888774
No 188
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0032 Score=59.05 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=28.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
...+|.|+|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999985 44556666665
No 189
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.79 E-value=0.012 Score=65.18 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=86.1
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+.+..--...... ..+....+- +.|
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHH
Confidence 579999999999999986543 2457889999999999999998875211111000 000000000 111
Q ss_pred HHHhhC-----CCCCcCcHHHHHHHH---HH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEALEG-----FVPTVGELNSLLESI---RA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
...-.. ........+++.... .. -..+++-++|+|++..-+...++.+...+......+.+|++|.+ ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 110000 000011222222221 11 12356668999999665555677787777765566676666643 333
Q ss_pred HHh-ccccceeecCCCCcccc
Q 005860 319 ARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~ 338 (673)
... ..-...++..+++.++-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el 183 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKI 183 (563)
T ss_pred HHHHHHhceEEEecCCCHHHH
Confidence 322 22245677887776653
No 190
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.00031 Score=75.71 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=89.8
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccchhhh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELPETCC 593 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP~~i~ 593 (673)
+..+..+.+..+.. ......+..++.|..|++.+ +.+..+...+..+.+|++|+|++|.|..+.. +.
T Consensus 71 l~~l~~l~l~~n~i-----~~~~~~l~~~~~l~~l~l~~-------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~ 137 (414)
T KOG0531|consen 71 LTSLKELNLRQNLI-----AKILNHLSKLKSLEALDLYD-------NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LS 137 (414)
T ss_pred hHhHHhhccchhhh-----hhhhcccccccceeeeeccc-------cchhhcccchhhhhcchheeccccccccccc-hh
Confidence 44455555444432 11223356788999999999 8888887778999999999999999998864 78
Q ss_pred cCCCccEEEeccCCCCccccccccccccCCeeecccccccccccc-CCCCCCCCcC
Q 005860 594 ELLNLQVLEIEQCTSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKG-IQRLTNLRTL 648 (673)
Q Consensus 594 ~L~~L~~L~l~~c~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~-i~~L~~L~~L 648 (673)
.|..|+.|+++++. +..++ .+..+.+|+.++++.|.+..++.. ...+.+|..+
T Consensus 138 ~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 138 TLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEEL 191 (414)
T ss_pred hccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHH
Confidence 88889999999976 87776 666789999999999988887643 3455555544
No 191
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0055 Score=59.71 Aligned_cols=44 Identities=16% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD 240 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (673)
..-.++.|.|.+|+||||+|.++... ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 34689999999999999999777764 222334677887655544
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0022 Score=66.04 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=55.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
.-+.++|..|+|||+||.++.+.. ...-..++|+++. +++..+...-... ..+.. .. .+.+.+ -
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~---~~-~~~l~~-~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD------ELIEILREIRFNN---DKELE---EV-YDLLIN-C 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHH---HH-HHHhcc-C
Confidence 569999999999999999999963 2223356777543 3333333211111 01111 11 222322 2
Q ss_pred EEEEEcCCCCCCccchh--hhhhhccCC-CCCeEEEEEcCC
Q 005860 278 FLLILDDMWTDDYSKWE--PFHYCLKNG-VRGSKILVTTRK 315 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 315 (673)
=||||||+-......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999554434442 233333321 234568888863
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.75 E-value=0.0093 Score=56.04 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=65.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC--CC-------------CCcCc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG--FV-------------PTVGE 261 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~-------------~~~~~ 261 (673)
-.+++|+|..|.|||||++.+..... .-.+.+++.-. +.......+-+.++- +. .....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999998532 22344443211 111111111111110 00 00111
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeec
Q 005860 262 LNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 262 ~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
-+...-.+...+-.++=+++||+..+. |....+.+...+.....|..||++|.+...... ..+.+.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122233455566677788999987432 222223333333322246779999998776653 3444444
No 194
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.73 E-value=0.011 Score=53.42 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=58.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
-.+++|+|..|.|||||++.+..... ...+.+++.-.. .+.- ..+...-+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhcC
Confidence 35899999999999999999988532 234444432100 0000 000111122233455556667
Q ss_pred eEEEEEcCCCC-CCccchhhhhhhccCCCCCeEEEEEcCChhHHHh
Q 005860 277 KFLLILDDMWT-DDYSKWEPFHYCLKNGVRGSKILVTTRKETVARM 321 (673)
Q Consensus 277 r~LlVLDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 321 (673)
+-++++|+.-. -|......+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77899998632 1222333344444332 2468888888665543
No 195
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.011 Score=60.96 Aligned_cols=64 Identities=8% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHHh-ccccceeecCCCCcccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
+++-++|+|++..-+....+.+...+.....++.+|+||.+.. +... .+-...+.+.+++.++.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~ 170 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEES 170 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHH
Confidence 3344556799976666778888888877666778888877643 3322 23356788888877764
No 196
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.0025 Score=60.56 Aligned_cols=113 Identities=14% Similarity=-0.002 Sum_probs=62.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCC--cCcHHHHHHHHHHHhCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPT--VGELNSLLESIRASLVG 275 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 275 (673)
.++.|+|..|.||||+|..+... ...+-..++.+. ..++.+.....++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999766664 222333333331 1122222233455555432221 2234455555555 334
Q ss_pred CeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh
Q 005860 276 KKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET 317 (673)
Q Consensus 276 kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (673)
+.-+||+|.+..-+.++...+...+ ...|-.||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5558999999432222233333332 245778999988743
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.71 E-value=0.004 Score=59.14 Aligned_cols=129 Identities=24% Similarity=0.234 Sum_probs=62.0
Q ss_pred echhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc----CCc-----ccHHH
Q 005860 173 GRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV----SDP-----FDELR 243 (673)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~-----~~~~~ 243 (673)
.+..+....++.|.. ..++.+.|++|.|||.||.+..-+.-....|+..+++.- .+. .+..+
T Consensus 4 p~~~~Q~~~~~al~~---------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHh---------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 455666677777762 358999999999999999666554333477888877641 111 01110
Q ss_pred ----HHHHHHHHhhCCCCCcCcHHHHHHH------HHHHhCCC---eEEEEEcCCCCCCccchhhhhhhccCCCCCeEEE
Q 005860 244 ----IAKAIIEALEGFVPTVGELNSLLES------IRASLVGK---KFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKIL 310 (673)
Q Consensus 244 ----~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ii 310 (673)
.+..+.+.+..-. .....+.+... -..+++|+ ..+||+|++.+-...++.. .+...+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---ILTRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HHcccCCCcEEE
Confidence 1122222222211 11112221110 01234553 4699999996655555544 455567899999
Q ss_pred EEcC
Q 005860 311 VTTR 314 (673)
Q Consensus 311 vTtr 314 (673)
++=-
T Consensus 151 ~~GD 154 (205)
T PF02562_consen 151 ITGD 154 (205)
T ss_dssp EEE-
T ss_pred EecC
Confidence 9854
No 198
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.71 E-value=0.0044 Score=61.07 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=92.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeE-EEEEcCCcccHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKR-MWVCVSDPFDELRIAKA 247 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~ 247 (673)
++++|-+..++-|.+.+... .......+|++|.|||+-|.+.....--.+.|.++ +=.++|+.-...-+-.+
T Consensus 36 de~~gQe~vV~~L~~a~~~~-------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR-------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc-------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 57899999999999988762 36789999999999999998777743223456443 33455554322200000
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHh--CCCe-EEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhH-HH-hc
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASL--VGKK-FLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETV-AR-MM 322 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~ 322 (673)
..+...+........ .-++ -.||||++.+-..+.|..+.....+....++.|+++..-+. .. ..
T Consensus 109 -----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 -----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 011111111110000 0123 37889999776777899999988887777777666654321 11 11
Q ss_pred cccceeecCCCCccccc
Q 005860 323 ESIHVISIKELSEQECW 339 (673)
Q Consensus 323 ~~~~~~~l~~L~~~~~~ 339 (673)
.-...|..++|.+++..
T Consensus 178 SRC~KfrFk~L~d~~iv 194 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIV 194 (346)
T ss_pred hhHHHhcCCCcchHHHH
Confidence 22456777888776654
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.70 E-value=0.01 Score=59.53 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=28.6
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHH
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIA 245 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 245 (673)
-|.+.|.+|+|||+||+.+.+. .. ...+.++.+...+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHh
Confidence 3568999999999999999872 21 234556665555555443
No 200
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0076 Score=56.24 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=64.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC--cccHHHHHHHHHHHhhC--CCCC----------cCcH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD--PFDELRIAKAIIEALEG--FVPT----------VGEL 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 262 (673)
-.+++|+|..|.|||||.+.+..-. ....+.+++.-.. ....... ...++- +... ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3589999999999999999999852 2334444432110 0011111 111110 0000 0011
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeec
Q 005860 263 NSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
+...-.+...+-.++=+++||+-... |....+.+...+.....+..||++|.+...... ..+++.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12223355566667789999987432 222233343434332235678999998776654 3344443
No 201
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.016 Score=56.57 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcc-----cc------ccC---CeEEEEEc----CCc--ccH----------------
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSD-----VF------EYF---DKRMWVCV----SDP--FDE---------------- 241 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~v----s~~--~~~---------------- 241 (673)
.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.= ... .++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999998311 10 011 13445421 111 111
Q ss_pred ------HHHHHHHHHHhhCC---CCCcCc---HHHHHHHHHHHhCCCeEEEEEcCCCC----CCccchhhhhhhccCCCC
Q 005860 242 ------LRIAKAIIEALEGF---VPTVGE---LNSLLESIRASLVGKKFLLILDDMWT----DDYSKWEPFHYCLKNGVR 305 (673)
Q Consensus 242 ------~~~~~~i~~~l~~~---~~~~~~---~~~~~~~l~~~l~~kr~LlVLDdvw~----~~~~~~~~l~~~l~~~~~ 305 (673)
++...+.++.++.. .....+ -+.-+-.+.+.|..++=|+|||.--. ......-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 13333444444432 122222 23334557788889999999996422 111223333333333 3
Q ss_pred CeEEEEEcCChhHHHh
Q 005860 306 GSKILVTTRKETVARM 321 (673)
Q Consensus 306 gs~iivTtr~~~v~~~ 321 (673)
|..|+++|.+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8899999998665443
No 202
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.69 E-value=0.0035 Score=73.31 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=37.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~-------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC-------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999986654 233558999999999999888874
No 203
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.019 Score=63.89 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=82.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+.+..--...-+ ..+++.-...+.|
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHH
Confidence 579999999999999987654 245677899999999999988766311100000 0011111111111
Q ss_pred HHHhhCC-----CCCcCcHHH---HHHHHHH-HhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEc-CChhH
Q 005860 249 IEALEGF-----VPTVGELNS---LLESIRA-SLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTT-RKETV 318 (673)
Q Consensus 249 ~~~l~~~-----~~~~~~~~~---~~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 318 (673)
....... .......++ +...+.. -..+++-++|+|++..-....++.|...+........+|++| ....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 1110000 000011222 2222211 124566688999996555556777777776554455555544 33333
Q ss_pred HHh-ccccceeecCCCCcccc
Q 005860 319 ARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~~~ 338 (673)
... ......++..+++.++.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei 183 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDI 183 (559)
T ss_pred cHHHHhHheEEecCCCCHHHH
Confidence 222 22245677777776553
No 204
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.67 E-value=0.0099 Score=58.68 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccccc----CCeEEEEEcCCcccHHHHHHHHHHHhhCCC------------CC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY----FDKRMWVCVSDPFDELRIAKAIIEALEGFV------------PT 258 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~ 258 (673)
..-.++.|+|.+|+|||+||.+++-....... ...++|++....++...+.. +++..+... .+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34579999999999999999887643212121 36789999888777654433 333332211 01
Q ss_pred cCcHHHHHHHHHHHhC-C-CeEEEEEcCC
Q 005860 259 VGELNSLLESIRASLV-G-KKFLLILDDM 285 (673)
Q Consensus 259 ~~~~~~~~~~l~~~l~-~-kr~LlVLDdv 285 (673)
..++......+.+.+. . +.-+||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1122233344444443 3 5668888887
No 205
>PRK06696 uridine kinase; Validated
Probab=96.65 E-value=0.002 Score=62.98 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=34.9
Q ss_pred echhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 173 GRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 173 Gr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~----~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN----LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC----CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35667777777776543 245789999999999999999999874
No 206
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.014 Score=60.54 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=81.6
Q ss_pred ccee-chhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc--------------------cCC
Q 005860 170 EIRG-RDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE--------------------YFD 228 (673)
Q Consensus 170 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~ 228 (673)
.++| -+.-++.+...+..+. -...+.++|+.|+||||+|+.+.+..--.. |.|
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 4566 5666777777775443 245779999999999999977755311000 112
Q ss_pred eEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHH----hCCCeEEEEEcCCCCCCccchhhhhhhccCCC
Q 005860 229 KRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRAS----LVGKKFLLILDDMWTDDYSKWEPFHYCLKNGV 304 (673)
Q Consensus 229 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~ 304 (673)
.. ++.... .....+++.+.+... ..+.+=++|+|++..-+....+.+...+....
T Consensus 80 ~~-~i~~~~--------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp 138 (329)
T PRK08058 80 VH-LVAPDG--------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred EE-Eecccc--------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC
Confidence 11 111000 011123322222211 23455578999985555556777888887766
Q ss_pred CCeEEEEEcCChh-HHHh-ccccceeecCCCCcccc
Q 005860 305 RGSKILVTTRKET-VARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 305 ~gs~iivTtr~~~-v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
.++.+|++|.+.. +... -.-...+++.+++.++.
T Consensus 139 ~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~ 174 (329)
T PRK08058 139 GGTTAILLTENKHQILPTILSRCQVVEFRPLPPESL 174 (329)
T ss_pred CCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHH
Confidence 7787887776533 3322 22366788888877663
No 207
>PRK13695 putative NTPase; Provisional
Probab=96.62 E-value=0.00082 Score=62.98 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998875
No 208
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.011 Score=57.76 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=73.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC-----cccHHHHHHHHHHHhhCCC------C-CcCcHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD-----PFDELRIAKAIIEALEGFV------P-TVGELNS 264 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~-~~~~~~~ 264 (673)
-.+++|||..|.|||||++.+..- ...-.+.+++.-.+ .....+-..++++.++... + +...-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 468999999999999999999984 33344455543211 1123344555666655432 1 1122222
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccC--CCCCeEEEEEcCChhHHHhccc
Q 005860 265 LLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKN--GVRGSKILVTTRKETVARMMES 324 (673)
Q Consensus 265 ~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~ 324 (673)
-.-.+.+.|.-++=+||.|..-+. |...-..+...+.. ...|-..+.+|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 334567788889999999976321 11111112222221 2346678999999888887644
No 209
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.012 Score=61.19 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=73.9
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccc-------------------cCCeE
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFE-------------------YFDKR 230 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 230 (673)
.++|-+....++..+..... .....+-++|+.|+||||+|..+.+..--.. ....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 46677778888888876433 1223599999999999999988877411000 11233
Q ss_pred EEEEcCCccc---HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccCCCCCe
Q 005860 231 MWVCVSDPFD---ELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGS 307 (673)
Q Consensus 231 ~wv~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs 307 (673)
..+..++... ..+..+++.+....... .++.-++++|++..-..+.-+.+...+......+
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 3444443333 12222222222211110 3567789999995544445566666666667778
Q ss_pred EEEEEcCC
Q 005860 308 KILVTTRK 315 (673)
Q Consensus 308 ~iivTtr~ 315 (673)
.+|++|.+
T Consensus 141 ~~il~~n~ 148 (325)
T COG0470 141 RFILITND 148 (325)
T ss_pred EEEEEcCC
Confidence 88888874
No 210
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.58 E-value=0.01 Score=55.45 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=58.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE------cCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC------VSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIR 270 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 270 (673)
-.+++|+|..|+|||||++.+..-. ....+.+++. +.+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 3589999999999999999998842 2233333331 111111 111222334455
Q ss_pred HHhCCCeEEEEEcCCCCC-CccchhhhhhhccCC-CC-CeEEEEEcCChhHHHh
Q 005860 271 ASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNG-VR-GSKILVTTRKETVARM 321 (673)
Q Consensus 271 ~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~~~ 321 (673)
..+..++-+++||+--+. |....+.+...+... .. +..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 666667788999986321 222222233333221 12 3568888888765553
No 211
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.57 E-value=0.0098 Score=69.68 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred CcceechhhHHHHHHHhccCCcc--cccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE--EIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 246 (673)
..++|-+..++.+...+...... ..+.....+.++|+.|+|||+||+.+.+. .-..-...+-+..+.-.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~---- 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKH---- 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccc----
Confidence 46899999999998877532110 00123456779999999999999888763 11111223334433321111
Q ss_pred HHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe-EEEEEcCCCCCCccchhhhhhhccCC-----------CCCeEEEEEcC
Q 005860 247 AIIEALEGFVPTVGELNSLLESIRASLVGKK-FLLILDDMWTDDYSKWEPFHYCLKNG-----------VRGSKILVTTR 314 (673)
Q Consensus 247 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr 314 (673)
.+..-++.+ +.....++ ...+.+.++.++ .+|+||++..-+...++.+...+..+ ...+-||+||.
T Consensus 583 ~~~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 583 TVSKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred cHHHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 111112221 11100111 112344444444 58889999766666777777766643 13455666766
Q ss_pred C
Q 005860 315 K 315 (673)
Q Consensus 315 ~ 315 (673)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 3
No 212
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.0078 Score=59.98 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=39.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
-.+.=|+|.+|+|||.|+.+++-...+.. .=..++|++-...|+++.+. +|++...
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 45999999999999999966653322221 22458999999889887764 5666543
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.52 E-value=0.0084 Score=57.68 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999998874
No 214
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.52 E-value=0.02 Score=53.11 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=64.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE-------EcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV-------CVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLE 267 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 267 (673)
-.+++|+|..|.|||||++.+...... ..+.+++ .+.+... ...+...+.-. .......-+..+-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 358999999999999999999985322 1222221 1222221 11222332210 1112222233344
Q ss_pred HHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeec
Q 005860 268 SIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 268 ~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
.+.+.+-.++=++++|+--+. |......+...+... +..||++|.+...... ..+++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 455666667778889976321 222223333333332 4568888888766542 3344444
No 215
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.51 E-value=0.01 Score=60.80 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccc----ccCCeEEEEEcCCcccHHHHHHHHHHHhhC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVF----EYFDKRMWVCVSDPFDELRIAKAIIEALEG 254 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (673)
..-.++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+++.+. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 346799999999999999996654321111 112468999999888888765 45666654
No 216
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.50 E-value=0.022 Score=54.75 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCC-CCCccchhhhhhhccC--CCCCeEEEEEcCChhHHHhcc
Q 005860 263 NSLLESIRASLVGKKFLLILDDMW-TDDYSKWEPFHYCLKN--GVRGSKILVTTRKETVARMME 323 (673)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVLDdvw-~~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~~ 323 (673)
++-+-.+.+.|-..+-+|+-|+-- +-|...=+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 444556777888888899999641 1111222223333332 245788999999999999653
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.50 E-value=0.018 Score=63.07 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=89.5
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc---cc---ccCCeEEEEEcCCccc
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD---VF---EYFDKRMWVCVSDPFD 240 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~---~~F~~~~wv~vs~~~~ 240 (673)
.+..+-+|+.+..+|..++..--+++ ..-+.+.|.|.+|.|||..+..|.+... .+ ..|+ .+.|..-.-..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~--~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQ--GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCC--CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecC
Confidence 34567799999999988875433211 2345999999999999999999988422 11 2332 23344344456
Q ss_pred HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC-----CCeEEEEEcCCCCCCccchhhhhhhccC-CCCCeEEEEEc
Q 005860 241 ELRIAKAIIEALEGFVPTVGELNSLLESIRASLV-----GKKFLLILDDMWTDDYSKWEPFHYCLKN-GVRGSKILVTT 313 (673)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTt 313 (673)
+.++...|++++.+.... +....+.+..++. .+.++|++|++..--...-+-+...+.| ..++||++|.+
T Consensus 471 ~~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 889999999999876432 2333444555543 4678888888711000112335555666 46788887765
No 218
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.022 Score=58.59 Aligned_cols=162 Identities=13% Similarity=0.133 Sum_probs=87.2
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCcc------------c-cccCCeEEEEEc
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSD------------V-FEYFDKRMWVCV 235 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~-~~~F~~~~wv~v 235 (673)
++++|-+..++.+...+..+. -....-++|+.|+||+++|..+.+..- + .....-..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEec
Confidence 468999999999999886554 246899999999999999866654310 0 011112233321
Q ss_pred CCcccHHHHHHHHHHHhhC--CCCCcCcHHHHHHHHHHHh-----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeE
Q 005860 236 SDPFDELRIAKAIIEALEG--FVPTVGELNSLLESIRASL-----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSK 308 (673)
Q Consensus 236 s~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~ 308 (673)
....+-..+-.+-++..+. ........++.. .+.+.+ .+++-++|+|++..-+....+.+...+....+ +.
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~ 155 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GT 155 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-Ce
Confidence 0000000000111111110 111112223322 233333 35667899999855555667777777765544 45
Q ss_pred EEEEcCC-hhHHHhc-cccceeecCCCCcccc
Q 005860 309 ILVTTRK-ETVARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 309 iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
+|++|.+ ..+...+ .-...+++.++++++.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~ 187 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQL 187 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHH
Confidence 5555543 3333332 3367788888887764
No 219
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.46 E-value=0.06 Score=62.80 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|.+..++++.+++....... .....++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-KMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999988764221000 122357999999999999999999985
No 220
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.0054 Score=61.85 Aligned_cols=131 Identities=25% Similarity=0.256 Sum_probs=70.0
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC-ccccccCCeEEE----EEcCCcc-----cH
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND-SDVFEYFDKRMW----VCVSDPF-----DE 241 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~w----v~vs~~~-----~~ 241 (673)
-+|..+..--+++|+.++ +..|.+.|.+|.|||.||-+..=. .-.+..|..++- +.+.++. ..
T Consensus 227 ~prn~eQ~~ALdlLld~d-------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 227 RPRNAEQRVALDLLLDDD-------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred CcccHHHHHHHHHhcCCC-------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 346666666677777654 899999999999999998433221 122344443332 1233221 11
Q ss_pred ----HHHHHHHHHHh---hCCCCCcCcHHHHHHHH---------HHHhCCC---eEEEEEcCCCCCCccchhhhhhhccC
Q 005860 242 ----LRIAKAIIEAL---EGFVPTVGELNSLLESI---------RASLVGK---KFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 242 ----~~~~~~i~~~l---~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.--++.|..-+ ...... . ...+...+ ..+.+++ +-+|++|...+-... .++..+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~-~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEP-G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhccccc-c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHh
Confidence 11223333322 222111 1 11111111 1123443 459999999654433 34555667
Q ss_pred CCCCeEEEEEcC
Q 005860 303 GVRGSKILVTTR 314 (673)
Q Consensus 303 ~~~gs~iivTtr 314 (673)
.+.||||+.|--
T Consensus 375 ~G~GsKIVl~gd 386 (436)
T COG1875 375 AGEGSKIVLTGD 386 (436)
T ss_pred ccCCCEEEEcCC
Confidence 789999999864
No 221
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.45 E-value=0.0036 Score=59.90 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=59.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
++|.|+|+.|+||||++..+... +.......+++- .++.. ...... ..+-....-..+.......++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHESK-RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccCc-cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887774 333334444432 22111 000000 0000000000111234556777777777
Q ss_pred EEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHH
Q 005860 278 FLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVAR 320 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (673)
=.|++|++.+ .+....... ....|..++.|+...++..
T Consensus 76 d~ii~gEird--~e~~~~~l~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRD--LETIRLALT---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCC--HHHHHHHHH---HHHcCCEEEEEecCCcHHH
Confidence 7999999943 333333222 2234666888888766544
No 222
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.0097 Score=60.31 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=45.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
..++|+|+|++|+||||++..+......+..-..+..|+.... ....+.+....+.++.......+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 4579999999999999999887764222211124555654321 1122333333333333322223334444444433 3
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777753
No 223
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.44 E-value=0.015 Score=54.30 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCc-cc--cc---cCC--eEEEEEcCCcccHHHHHHHHHHHhhCCCC----CcCcH--
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDS-DV--FE---YFD--KRMWVCVSDPFDELRIAKAIIEALEGFVP----TVGEL-- 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~-- 262 (673)
-.+++|+|+.|+|||||.+.+..+. .+ .. .|. .+.|+ .+ .+.++.++.... ....+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999885321 11 11 110 12232 21 345566654311 11111
Q ss_pred -HHHHHHHHHHhCCC--eEEEEEcCCCCC-CccchhhhhhhccC-CCCCeEEEEEcCChhHHHhccccceeec
Q 005860 263 -NSLLESIRASLVGK--KFLLILDDMWTD-DYSKWEPFHYCLKN-GVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 263 -~~~~~~l~~~l~~k--r~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
+...-.+...+-.+ +=++++|+.-.. +....+.+...+.. ...|..||++|.+.+.... ...++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22233344555556 668888976321 22223334343332 1246779999998876643 4455554
No 224
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.43 E-value=0.0074 Score=65.58 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=37.9
Q ss_pred CcceechhhHHHHHHHhccCCcc------cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE------EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|.+..++++.+.+..+-.. .+-...+-+.++|++|+|||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 46788999999888876421100 00123456899999999999999999996
No 225
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.41 E-value=0.0074 Score=55.80 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=63.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC--cccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD--PFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
-.+++|+|..|.|||||.+.+.... ....+.+++.-.. ..+..+..+ +.++- ..+...-+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHHh
Confidence 3589999999999999999999842 3445555553111 111111110 01110 0011222233344556666
Q ss_pred CCeEEEEEcCCCCC-CccchhhhhhhccCC-CCCeEEEEEcCChhHHH
Q 005860 275 GKKFLLILDDMWTD-DYSKWEPFHYCLKNG-VRGSKILVTTRKETVAR 320 (673)
Q Consensus 275 ~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 320 (673)
.++-++++|+.-+. |......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 67788999987331 222233344444321 34667899998876444
No 226
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.013 Score=61.61 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++.++|++|+||||++..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999887753
No 227
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.35 E-value=0.017 Score=57.04 Aligned_cols=86 Identities=21% Similarity=0.164 Sum_probs=53.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCC------------------
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFV------------------ 256 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------------ 256 (673)
+.-.++.|+|.+|+||||||.++.... .+ .=..++|++..+. +.++.+++ ++++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 446799999999999999998874321 22 2356888988664 44555543 2232110
Q ss_pred --CCcCcHHHHHHHHHHHhCC-CeEEEEEcCC
Q 005860 257 --PTVGELNSLLESIRASLVG-KKFLLILDDM 285 (673)
Q Consensus 257 --~~~~~~~~~~~~l~~~l~~-kr~LlVLDdv 285 (673)
....+.+.+...+.+.+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0112335566666666653 5558999987
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.062 Score=55.07 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHH-hccccceeecCCCCcccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVAR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~L~~~~~ 338 (673)
+++=++|+|++..-+....+.+...+.....++.+|++|.+. .+.. ..+-...+.+.+++.++.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~ 172 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQA 172 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHH
Confidence 445588899986666667888888888777778777776654 3433 333366788888887765
No 229
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.34 E-value=0.01 Score=60.72 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCC-----CCCcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGF-----VPTVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 269 (673)
+.-+++-|+|++|+||||||.+++-. ....-..++||+....+++. .++.++.. ..+..+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 44679999999999999999776653 33344568899887766653 23333332 11223445555555
Q ss_pred HHHhC-CCeEEEEEcCC
Q 005860 270 RASLV-GKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~-~kr~LlVLDdv 285 (673)
...++ +..-+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55543 45669999987
No 230
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.33 E-value=0.013 Score=67.12 Aligned_cols=122 Identities=11% Similarity=0.130 Sum_probs=66.8
Q ss_pred cceechhhHHHHHHHhccCCc--ccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESS--EEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
.++|-++.++.+...+..... .........+.++|+.|+|||++|+.+.... . ...+.++.++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----c
Confidence 578999998888888753210 0001235678999999999999999988742 1 122334433321111 1
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhC-CCeEEEEEcCCCCCCccchhhhhhhccC
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLV-GKKFLLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
+.+-++.+ +.....+ ....+.+.++ ....+|+||++..-+...++.+...+..
T Consensus 530 ~~~LiG~~-~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 VSRLIGAP-PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHHcCCC-CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 22222222 1110000 0112333333 3346999999966666667777666553
No 231
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.011 Score=56.33 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=36.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcC-CcccHHHHHHHHHHHhhCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVS-DPFDELRIAKAIIEALEGF 255 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~ 255 (673)
+||.+||+.|+||||.+-++..... ..-..+..++.. ......+-++...+.++.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 6999999999999999866655422 223345666643 2234556667777777654
No 232
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.31 E-value=0.015 Score=54.33 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=63.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC--cccHHHHHHHHHHHhhC--CCCC----------cCcH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD--PFDELRIAKAIIEALEG--FVPT----------VGEL 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 262 (673)
-.+++|+|..|.|||||.+.+.... ....+.+++.-.. ....... ...++- +... ...-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 3589999999999999999999842 2233444432100 0111111 111111 1100 0111
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccC-CCCCeEEEEEcCChhHHHhccccceeec
Q 005860 263 NSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKN-GVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
+...-.+...+-.++=+++||+.... |......+...+.. ...|..||++|.+...... ..+++.+
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22233455556666778899987431 22222233333322 1246779999998776643 3444444
No 233
>PRK09354 recA recombinase A; Provisional
Probab=96.29 E-value=0.016 Score=59.73 Aligned_cols=84 Identities=21% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCC-----CCCcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGF-----VPTVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 269 (673)
+.-+++-|+|++|+||||||.++... ....-..++||+.-..+++. .+++++.. ..+....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 44689999999999999999776653 33344678899888777753 34444332 11223345555555
Q ss_pred HHHhC-CCeEEEEEcCC
Q 005860 270 RASLV-GKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~-~kr~LlVLDdv 285 (673)
...++ +..-+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 55553 45669999988
No 234
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.019 Score=52.22 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=59.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc---CCcccHHHHHHHHHHHh-----hCC----CCC-cCc---
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV---SDPFDELRIAKAIIEAL-----EGF----VPT-VGE--- 261 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l-----~~~----~~~-~~~--- 261 (673)
..|-|++..|.||||+|..+.-.. ....+ .+.++-+ ........++..+ ..+ +.. ..+ ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 478888999999999995544421 12222 3333322 2223333333332 000 000 000 011
Q ss_pred HHHHHHHHHHHhCC-CeEEEEEcCCCCC---CccchhhhhhhccCCCCCeEEEEEcCChh
Q 005860 262 LNSLLESIRASLVG-KKFLLILDDMWTD---DYSKWEPFHYCLKNGVRGSKILVTTRKET 317 (673)
Q Consensus 262 ~~~~~~~l~~~l~~-kr~LlVLDdvw~~---~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 317 (673)
..+.....++.+.. .-=|||||++-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223334445544 4459999998221 12234566666666667778999999843
No 235
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.26 E-value=0.016 Score=59.91 Aligned_cols=59 Identities=22% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccc---c-cCCeEEEEEcCCcccHHHHHHHHHHHhhC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVF---E-YFDKRMWVCVSDPFDELRIAKAIIEALEG 254 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (673)
..-.++-|+|.+|+|||+|+.+++-..... . .-..++||+....|+++.+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 345789999999999999997665321121 1 124689999999999887654 5666554
No 236
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.058 Score=55.32 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhHHHh-ccccceeecCCCCcccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
+++-++|+|++..-+...-+.+...+.....++.+|++|.+ ..+... .+-...+.+.+++.++.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~ 177 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEA 177 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHH
Confidence 45668999999555555566777777766667777777765 333332 23356677777777664
No 237
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=0.015 Score=63.78 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=60.0
Q ss_pred cCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh
Q 005860 194 INDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 194 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
.+.-+|.-++|++|+||||||..|..+ ..| .++=|.+|+.-++..+-..|...+....-...
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 356689999999999999999999985 233 46678888888877777766666543321100
Q ss_pred CCCeEEEEEcCCCCCCccchhhhhhhcc
Q 005860 274 VGKKFLLILDDMWTDDYSKWEPFHYCLK 301 (673)
Q Consensus 274 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~ 301 (673)
.+++.-+|+|.+.-......+.+...+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 1567788999883333223444544443
No 238
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.23 E-value=0.021 Score=58.67 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=39.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
..-.++.|+|.+|+|||||+..++-...... .-..++|++....+++..+ .++.+.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4468999999999999999987764321211 1235799998887777763 44555543
No 239
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.019 Score=62.78 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=47.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
..-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-.. .+.+++ .+...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHHh
Confidence 45689999999999999999999743 33444455665554211 122211 12334555667
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
..+-+|||||+
T Consensus 493 ~~PSiIvLDdl 503 (952)
T KOG0735|consen 493 YAPSIIVLDDL 503 (952)
T ss_pred hCCcEEEEcch
Confidence 78999999998
No 240
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.21 E-value=0.014 Score=55.61 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=45.3
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCC---eEEEEEcCCcccHHHHHHHHHHHh----hCCCCCcCcHHHHHHHHHH
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFD---KRMWVCVSDPFDELRIAKAIIEAL----EGFVPTVGELNSLLESIRA 271 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~ 271 (673)
||+|.|.+|+||||+|+.+...... .... ....+....-........ .-... ....+...+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999998874211 1222 233443333222222211 11111 1112345667777888877
Q ss_pred HhCCCeEEEE
Q 005860 272 SLVGKKFLLI 281 (673)
Q Consensus 272 ~l~~kr~LlV 281 (673)
..+++.+-+-
T Consensus 79 L~~g~~i~~p 88 (194)
T PF00485_consen 79 LKNGGSIEIP 88 (194)
T ss_dssp HHTTSCEEEE
T ss_pred HhCCCccccc
Confidence 7777765443
No 241
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.041 Score=57.26 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=56.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
..++|+|+|++|+||||++..+... ....=..+.+++. +.+. ..+-++...+.++.+-....+.+.+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4589999999999999999888763 2222123444443 2333 223333333444433222234445554444432
Q ss_pred CC-CeEEEEEcCCCCCC--ccchhhhhhhccCCCCCeEEEE
Q 005860 274 VG-KKFLLILDDMWTDD--YSKWEPFHYCLKNGVRGSKILV 311 (673)
Q Consensus 274 ~~-kr~LlVLDdvw~~~--~~~~~~l~~~l~~~~~gs~iiv 311 (673)
.. +.=+|++|-.-... ......+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 23477788663321 2234444444433333333444
No 242
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.042 Score=57.88 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=51.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCcccc--ccCCeEEEEEcCCcccH--HHHHHHHHHHhhCCCCCcCcHHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVF--EYFDKRMWVCVSDPFDE--LRIAKAIIEALEGFVPTVGELNSLLESIRA 271 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 271 (673)
..++|.++|+.|+||||.+..+....... .+-..+..+++. ++.. ...++...+.++.+-......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999997776542221 112245555543 3333 233555555555543333344555555544
Q ss_pred HhCCCeEEEEEcCCCC
Q 005860 272 SLVGKKFLLILDDMWT 287 (673)
Q Consensus 272 ~l~~kr~LlVLDdvw~ 287 (673)
. .+.-+|++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888998743
No 243
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.20 E-value=0.031 Score=57.81 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccccc----CCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY----FDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
..-.++-|+|.+|+|||+++.+++-....... =..++||+....+++..+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 34679999999999999999766543211111 14789999988888876554 444443
No 244
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.20 E-value=0.015 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|||.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 245
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.013 Score=62.83 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=62.7
Q ss_pred CcceechhhHHHHHHHhccCCccc-----ccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEE-----IINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELR 243 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (673)
.++=|.+..+.++.+++..-..+. +-...+=|.++|++|.|||.||+++.++. .-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecch-----
Confidence 467789999998888875432111 12345678899999999999999999963 3333 333322
Q ss_pred HHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 244 IAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
+|+..+.+ .+.+.+.+.+.+.-..-++++++|++
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecc
Confidence 12222222 22234445555556778999999998
No 246
>PHA02244 ATPase-like protein
Probab=96.17 E-value=0.031 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|.|+|+.|+|||+||+++...
T Consensus 122 VLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999884
No 247
>CHL00176 ftsH cell division protein; Validated
Probab=96.16 E-value=0.016 Score=65.29 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=54.6
Q ss_pred CcceechhhHHHHHHHh---ccCCc--ccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHH
Q 005860 169 SEIRGRDEEKSSLKSKL---LCESS--EEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELR 243 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L---~~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (673)
.++.|.++.++++.+.+ ..... .-+....+-|.++|++|+|||+||+++.+.. ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 46889887766665543 22210 0001224568999999999999999998852 112 2333221 1
Q ss_pred HHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 244 IAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
+. ....+ .....+...+.......+++|+|||+
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecc
Confidence 11 00000 01122334455555678899999999
No 248
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.0037 Score=60.96 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=40.5
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|.+.-++.+.-++...... +..+--|.++|++|.||||||.-+.+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r--~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR--GEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc--CCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 58999999998888777543321 245778999999999999999999996
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.13 E-value=0.022 Score=52.19 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=29.5
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD 240 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (673)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4789999999999999988775 222335677887765543
No 250
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.12 E-value=0.016 Score=59.18 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCC-----CCcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFV-----PTVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 269 (673)
+.-+++-|+|++|+||||||.++... ....-..++||+....++.. .+++++... .+....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999776654 22334567899877666653 344443321 1223445555555
Q ss_pred HHHhC-CCeEEEEEcCC
Q 005860 270 RASLV-GKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~-~kr~LlVLDdv 285 (673)
...++ +..-+||+|.|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55553 45679999987
No 251
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.12 E-value=0.014 Score=61.95 Aligned_cols=52 Identities=25% Similarity=0.287 Sum_probs=38.0
Q ss_pred CcceechhhHHHHHHHhccCCc------ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESS------EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|.+..+++|.+.+...-. .-+-...+-|.++|++|+|||+||+++.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4688999988888876632110 001134567889999999999999999985
No 252
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0018 Score=62.35 Aligned_cols=85 Identities=25% Similarity=0.232 Sum_probs=50.8
Q ss_pred cccccccccceecCC--C-CcccchhhhcCCCccEEEeccCCCCcc---ccccccccccCCeeecccccccccc----cc
Q 005860 569 IEKLIHLRYLRLVGL--G-TEELPETCCELLNLQVLEIEQCTSLKR---LPLGIGKLVNLRHLTYDDSCLEFIP----KG 638 (673)
Q Consensus 569 i~~L~~Lr~L~L~~~--~-i~~LP~~i~~L~~L~~L~l~~c~~l~~---lP~~i~~L~~Lr~L~l~~~~l~~lP----~~ 638 (673)
+..|++|++|.++.| . ...++....++++|++|+++++. +.. ++ ....+.+|..|++..|....+- .-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcccCCccccccHHHHH
Confidence 344667777777777 3 44566556666777777777754 332 22 2345566666666555443321 11
Q ss_pred CCCCCCCCcCCeeEEcc
Q 005860 639 IQRLTNLRTLSEFVVVR 655 (673)
Q Consensus 639 i~~L~~L~~L~~~~~~~ 655 (673)
+.-|++|..|+++.+..
T Consensus 139 f~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHhhhhccccccccCC
Confidence 34467888888887764
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.11 E-value=0.0051 Score=66.62 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=39.5
Q ss_pred cceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++|.++.+++|++.|......- ...-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl-~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL-EEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc-CCCCceEEEecCCCCCchHHHHHHHHH
Confidence 68999999999999993221100 134579999999999999999999883
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.082 Score=51.15 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=59.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc-CCcccHHHHHHHHHHHhhCCCCCcCcHH----HHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV-SDPFDELRIAKAIIEALEGFVPTVGELN----SLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~l~ 270 (673)
+-+++.++|.-|.|||++.+++..... =+.++-|.+ ....+...+...|...+..+ ...+.. .....+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 357999999999999999995444211 122222333 33456677888888888773 223333 3333343
Q ss_pred HHh-CCCe-EEEEEcCCCCCCccchhhhhh
Q 005860 271 ASL-VGKK-FLLILDDMWTDDYSKWEPFHY 298 (673)
Q Consensus 271 ~~l-~~kr-~LlVLDdvw~~~~~~~~~l~~ 298 (673)
+.. +++| ..+++|+.........+.++-
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrl 153 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRL 153 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHH
Confidence 333 5677 899999986655555555443
No 255
>PRK07667 uridine kinase; Provisional
Probab=96.09 E-value=0.0066 Score=57.85 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 178 KSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~-----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK-----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC-----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666664444 34589999999999999999998874
No 256
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.08 E-value=0.073 Score=50.22 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=71.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEc-------------------CCcc------------------
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCV-------------------SDPF------------------ 239 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~------------------ 239 (673)
-.|+.|+|++|+|||||.+.+..-+.+ =.+.+||.- -+.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 459999999999999999999874332 234555531 0111
Q ss_pred -------cHHHHHHHHHHHhhCCC-----C-CcCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccC-CC
Q 005860 240 -------DELRIAKAIIEALEGFV-----P-TVGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKN-GV 304 (673)
Q Consensus 240 -------~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~ 304 (673)
.+++...++++.++..+ + +...-++-+-.|.+.|.-++-++.+|..-+. |++....+...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12233344444444331 1 1222344455677888888889999998432 22222222222222 34
Q ss_pred CCeEEEEEcCChhHHHhcc
Q 005860 305 RGSKILVTTRKETVARMME 323 (673)
Q Consensus 305 ~gs~iivTtr~~~v~~~~~ 323 (673)
.|-..|+.|..-..|..+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 5777888888877777643
No 257
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.033 Score=52.02 Aligned_cols=119 Identities=21% Similarity=0.153 Sum_probs=62.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC--CCCC------------cCcH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG--FVPT------------VGEL 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--~~~~------------~~~~ 262 (673)
-.+++|+|..|.|||||++.+.... ....+.+++.-....+.. ..+...++- +... ...-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998852 223444444210000000 011111110 0000 0111
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCC-CCCeEEEEEcCChhHHHh
Q 005860 263 NSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNG-VRGSKILVTTRKETVARM 321 (673)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 321 (673)
+...-.+...+..++=++++|+.-.. |......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22233456666778889999987331 222223333333321 236779999998776553
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0023 Score=36.93 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=8.3
Q ss_pred cccceecCCCCcccchhh
Q 005860 575 LRYLRLVGLGTEELPETC 592 (673)
Q Consensus 575 Lr~L~L~~~~i~~LP~~i 592 (673)
|++|+|++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 259
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.07 E-value=0.0097 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999988874
No 260
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.06 E-value=0.021 Score=60.34 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHhCCCeEEEEEcCCCCCCccch-hhhhhhccC-CCCCeEEEEEcCChhHHHhc
Q 005860 267 ESIRASLVGKKFLLILDDMWTDDYSKW-EPFHYCLKN-GVRGSKILVTTRKETVARMM 322 (673)
Q Consensus 267 ~~l~~~l~~kr~LlVLDdvw~~~~~~~-~~l~~~l~~-~~~gs~iivTtr~~~v~~~~ 322 (673)
--+.+.+-+.++|+|||.--+.-..+= ..+...+.. ...|..+|++|....+...+
T Consensus 481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 346788899999999996522111111 123333332 34577777777777766643
No 261
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.061 Score=56.98 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
.++.-+.+.|++|+|||+||..+... ..|..+=-++ ++++ ++.+ .......+.......-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiS------pe~m-------iG~s--EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIIS------PEDM-------IGLS--ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeC------hHHc-------cCcc--HHHHHHHHHHHHHHhhc
Confidence 45778889999999999999888875 4565433332 1110 0000 00011122334444556
Q ss_pred CCeEEEEEcCCCCCCccchh------------hhhhhccC-CCCCeE--EEEEcCChhHHHhccc----cceeecCCCC
Q 005860 275 GKKFLLILDDMWTDDYSKWE------------PFHYCLKN-GVRGSK--ILVTTRKETVARMMES----IHVISIKELS 334 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~------------~l~~~l~~-~~~gs~--iivTtr~~~v~~~~~~----~~~~~l~~L~ 334 (673)
+.=-.||+||+ +..-+|- .+...+.. ...|-| |+-||....+...|+- ...|+++.++
T Consensus 597 S~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 597 SPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred CcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 66779999999 3333443 23333332 223444 5557777888888865 4456666655
No 262
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.05 E-value=0.071 Score=53.37 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=61.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC-CCCC-------cCcHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG-FVPT-------VGELNSLLE 267 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~-------~~~~~~~~~ 267 (673)
+..-++|+|..|.|||||.+.+.... ....+.+++.- ......+-..++...... .... .++... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECC-EEeecchhHHHHHHHhcccccccccccccccccchH-HH
Confidence 35789999999999999999999852 22333444310 011000011223222211 1110 111111 11
Q ss_pred HHHHHhC-CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHHh
Q 005860 268 SIRASLV-GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVARM 321 (673)
Q Consensus 268 ~l~~~l~-~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 321 (673)
-+...+. ..+-++++|.+- ....+..+...+. .|..||+||.+..+...
T Consensus 185 ~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 2333332 578899999983 3344555544442 47789999998766443
No 263
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.015 Score=54.62 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=60.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE---cCCcc-cHHHHHHHHHHHhhC--CCCC------------
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC---VSDPF-DELRIAKAIIEALEG--FVPT------------ 258 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~~~~~i~~~l~~--~~~~------------ 258 (673)
-.+++|+|..|.|||||++.+.... ....+.+.+. ++... .... ..+.+.- +.+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPP----LRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHH----HhhcEEEEecCCccCCCCCHHHhee
Confidence 3589999999999999999998742 2334444442 11100 0111 1111110 0000
Q ss_pred --cCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCC-C-CCeEEEEEcCChhHHH
Q 005860 259 --VGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNG-V-RGSKILVTTRKETVAR 320 (673)
Q Consensus 259 --~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~-~gs~iivTtr~~~v~~ 320 (673)
...-+..+-.+...+..++=++++|+--.. |......+...+... . .|..||++|.+.....
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 000122233355566667778999976321 222233343333321 2 2567888988876555
No 264
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.04 E-value=0.03 Score=57.97 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhhC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALEG 254 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 254 (673)
..-.++-|+|.+|+|||+|+..++-...... .-..++||+....|+++.+ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3467899999999999999977664322211 1136899999999888775 456666544
No 265
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.017 Score=60.19 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=49.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC-cccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD-PFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG 275 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (673)
-.++.++|+.|+||||++.++......+.....+.+++... .....+-++...+.++.......+..++...+ ..+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcC
Confidence 46899999999999999988877421111123455554322 22344555555666655432222222333333 33445
Q ss_pred CeEEEEEcCCC
Q 005860 276 KKFLLILDDMW 286 (673)
Q Consensus 276 kr~LlVLDdvw 286 (673)
+ -+|++|..-
T Consensus 216 ~-DlVLIDTaG 225 (374)
T PRK14722 216 K-HMVLIDTIG 225 (374)
T ss_pred C-CEEEEcCCC
Confidence 5 456699873
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.01 E-value=0.054 Score=58.05 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=49.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH--HHHHHHHHHHhhCCC---CCcCcHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE--LRIAKAIIEALEGFV---PTVGELNSLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 270 (673)
...+|.++|.+|+||||+|..+... ....-..+..|++ +.+.+ .+.+..+.++++.+. ....+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecC-CCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4689999999999999999888764 2222123444443 23333 445666666665431 11223333333333
Q ss_pred HHhCCCeEEEEEcCC
Q 005860 271 ASLVGKKFLLILDDM 285 (673)
Q Consensus 271 ~~l~~kr~LlVLDdv 285 (673)
+.+.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 344444 57889987
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.01 E-value=0.048 Score=58.47 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=46.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
.+++.++|++|+||||++..+.........-..+..|+... +. ..+.+....+.++.......+.+++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46999999999999999876655321012223566666532 22 1222333333344332222333444445543 23
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888965
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=95.98 E-value=0.043 Score=56.67 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=56.0
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCC---CCcCcHHHH-HHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFV---PTVGELNSL-LESI 269 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 269 (673)
+..+|.++|++|+||||++..+..... ...+ .++.+. .+.+. ..+.++...+.++... ....+.... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998777665321 1223 233343 33333 2334555666665431 111222222 2222
Q ss_pred HHHhCCCeEEEEEcCCCCC--CccchhhhhhhccCCCCCeEEEEE
Q 005860 270 RASLVGKKFLLILDDMWTD--DYSKWEPFHYCLKNGVRGSKILVT 312 (673)
Q Consensus 270 ~~~l~~kr~LlVLDdvw~~--~~~~~~~l~~~l~~~~~gs~iivT 312 (673)
........=+|++|-.-.. +...++.+........+.-.++|.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 2222222238889987432 222344443333223334445554
No 269
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.97 E-value=0.0098 Score=57.06 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCc---CcHHHHHHHHHHH-
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTV---GELNSLLESIRAS- 272 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~- 272 (673)
.+++.|.|+.|.||||+.+.+.... +.. ..-++|.... .. -.+...|...++..+... .....-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998887531 111 1112221111 01 122333333333321111 1111101112222
Q ss_pred -hCCCeEEEEEcCCCCCC-ccc----hhhhhhhccCCCCCeEEEEEcCChhHHHhcc
Q 005860 273 -LVGKKFLLILDDMWTDD-YSK----WEPFHYCLKNGVRGSKILVTTRKETVARMME 323 (673)
Q Consensus 273 -l~~kr~LlVLDdvw~~~-~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 323 (673)
+..++-|+++|.....- ..+ ...+...+.. .|+.+|++|.+.+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999974321 111 1122222322 3789999999998887654
No 270
>PTZ00035 Rad51 protein; Provisional
Probab=95.94 E-value=0.042 Score=57.05 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=39.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccc---c-cCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVF---E-YFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
..-.++.|+|.+|+|||||+..++-..... . .=..++|++....++++.+ .++.+.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 446899999999999999998776432211 1 1235679988877777763 44455544
No 271
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.11 Score=53.55 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=45.7
Q ss_pred CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHh-ccccceeecCCCCcccc
Q 005860 274 VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 274 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
.+++=++|+|++..-+....+.+...+.....++.+|++|.+. .+... .+-...+.+.+++.++.
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~ 171 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQA 171 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHH
Confidence 3556678899996666667788888888777778888777764 34322 23366788888877764
No 272
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.92 E-value=0.0063 Score=58.78 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999874
No 273
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.91 E-value=0.034 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....+|+|.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998884
No 274
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.89 E-value=0.013 Score=62.81 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=37.8
Q ss_pred CcceechhhHHHHHHHhccCCcc------cccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE------EIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|.+..++++.+.+...-.. -+-...+-|.++|++|+|||++|+++++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999888877422100 00123456789999999999999999995
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.89 E-value=0.09 Score=50.69 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999764
No 276
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.88 E-value=0.048 Score=56.29 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccc----cCCeEEEEEcCCcccHHHHHHHHHHHhh
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFE----YFDKRMWVCVSDPFDELRIAKAIIEALE 253 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 253 (673)
..-.++-|+|.+|+||||++.+++-...... .=..++||+....++++.+. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3468999999999999999977765422211 11378999998888887654 4444443
No 277
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.87 E-value=0.0054 Score=53.96 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|+|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998885
No 278
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.86 E-value=0.0065 Score=58.79 Aligned_cols=25 Identities=44% Similarity=0.573 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999885
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0056 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.--|+|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999875
No 280
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.018 Score=52.90 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=62.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc--cHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF--DELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG 275 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 275 (673)
.+++|+|..|.|||||++.+.... ....+.+++.-.... .... ....+.-.. +...-+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999852 234555555321110 1111 111111100 011112233345566666
Q ss_pred CeEEEEEcCCCCC-CccchhhhhhhccC-CCCCeEEEEEcCChhHHHh
Q 005860 276 KKFLLILDDMWTD-DYSKWEPFHYCLKN-GVRGSKILVTTRKETVARM 321 (673)
Q Consensus 276 kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~ 321 (673)
.+-++++|+.-.. |......+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7789999987431 12223333333332 1225678999988776654
No 281
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.76 E-value=0.019 Score=54.88 Aligned_cols=102 Identities=20% Similarity=0.152 Sum_probs=49.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh----
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASL---- 273 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 273 (673)
+++.|.|.+|.||||+++.+.+. .... ...+.+......-... +.+..+... ..+.. .+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a---~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIEA---QTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS-E---EEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcch---hhHHH---HHhcCCcccc
Confidence 57888999999999999888774 2222 2233333322222222 222222110 00000 000000
Q ss_pred -----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcC
Q 005860 274 -----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTR 314 (673)
Q Consensus 274 -----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 314 (673)
..++-+||+|+..--+...+..+...... .|+|+|+.=-
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12334999999965555556665555443 5778887643
No 282
>PRK08233 hypothetical protein; Provisional
Probab=95.75 E-value=0.0076 Score=56.77 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 283
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.72 E-value=0.076 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999985
No 284
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.097 Score=54.22 Aligned_cols=64 Identities=8% Similarity=0.113 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhHHHh-ccccceeecCCCCcccc
Q 005860 275 GKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 275 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
+++=++|+|++..-+....+.+...+....+++.+|++|.+ ..+... ..-...+.+.+++.++.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~ 196 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAA 196 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHH
Confidence 45558889999776777888888888877777776666665 444333 23356788888877654
No 285
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.70 E-value=0.074 Score=50.68 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=59.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE---------------cCCccc---HHHHHHHHHHHhhCCCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC---------------VSDPFD---ELRIAKAIIEALEGFVPT 258 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------vs~~~~---~~~~~~~i~~~l~~~~~~ 258 (673)
-.+++|.|..|.|||||.+.+..-.. .....+.+++. +.+... ...+...+.-..... .
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~ 111 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G 111 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c
Confidence 46899999999999999999988430 02222322221 111110 011222221100000 1
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccC-CCCCeEEEEEcCChh
Q 005860 259 VGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKN-GVRGSKILVTTRKET 317 (673)
Q Consensus 259 ~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 317 (673)
...-+...-.+...+-.++-++++|+.-+. |......+...+.. ...|..||++|.+..
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 111122233455566667779999987331 22223334333432 223777888988864
No 286
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.038 Score=55.15 Aligned_cols=88 Identities=23% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHH-hhC---C-CCCcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEA-LEG---F-VPTVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~---~-~~~~~~~~~~~~~l 269 (673)
+.-+++=|+|+.|+||||+|.+++-. ....-..++|++.-..+++..+.. +... +.. . ..+..+..++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45689999999999999999665553 444455899999998888876433 3333 221 1 11222222344444
Q ss_pred HHHhCCCeEEEEEcCC
Q 005860 270 RASLVGKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~~kr~LlVLDdv 285 (673)
......+--|||+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444445669999988
No 287
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.70 E-value=0.022 Score=53.86 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.++||-++.++++.-.-.++. .+-+.|.||+|+||||-+..+.+.
T Consensus 26 l~dIVGNe~tv~rl~via~~gn-------mP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN-------MPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC-------CCceEeeCCCCCchhhHHHHHHHH
Confidence 3589999999999877665443 667889999999999987776663
No 288
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.69 E-value=0.049 Score=52.02 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=63.4
Q ss_pred ccCCcceechhhHHHHHHHh---ccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHH
Q 005860 166 IDVSEIRGRDEEKSSLKSKL---LCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDEL 242 (673)
Q Consensus 166 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 242 (673)
++-..++|.|...+.+++-- ..+. ...-|.+||.-|.||++|++++.+. +....-. -|.|...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~------pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~---- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL------PANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE---- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC------cccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----
Confidence 34457899988877776432 2221 2445789999999999999999995 3333322 3333321
Q ss_pred HHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh--CCCeEEEEEcCCCC-CCccchhhhhhhccC
Q 005860 243 RIAKAIIEALEGFVPTVGELNSLLESIRASL--VGKKFLLILDDMWT-DDYSKWEPFHYCLKN 302 (673)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~ 302 (673)
++ .+ ...+.+.| ...||.|..||+-. ++...+..++..+..
T Consensus 123 dl---------------~~----Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 DL---------------AT----LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred HH---------------hh----HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11 11 12222333 35799999999843 233456777777764
No 289
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.69 E-value=0.023 Score=54.68 Aligned_cols=82 Identities=24% Similarity=0.255 Sum_probs=50.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhC-------CCCCcCcH-------
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEG-------FVPTVGEL------- 262 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------- 262 (673)
.-++|+|..|+|||+|+..+.+.. .-+..+++.+.+.. .+.++.+++...-.. ...+..-.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 468999999999999999888753 23445888887653 444555555332100 01111100
Q ss_pred --HHHHHHHHHHhCCCeEEEEEcCC
Q 005860 263 --NSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 263 --~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
-...+.++. +++++|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 122233333 799999999999
No 290
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.69 E-value=0.0056 Score=54.82 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=58.2
Q ss_pred eechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccc-cccCCeEEEEEcCCcccHHHHHHHHHH
Q 005860 172 RGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDV-FEYFDKRMWVCVSDPFDELRIAKAIIE 250 (673)
Q Consensus 172 vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~i~~ 250 (673)
||.-..++++.+.+..-. ..-.-|.|+|..|+||+++|+.++..... ...|..+ ..... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a-----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~ 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH
Confidence 455566666666664332 12245789999999999999999986322 1122111 00010 0 11111
Q ss_pred HhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhccC-CCCCeEEEEEcCC
Q 005860 251 ALEGFVPTVGELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLKN-GVRGSKILVTTRK 315 (673)
Q Consensus 251 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~ 315 (673)
+ . +.--|+|+|+..-+......+...+.. .....|+|.||..
T Consensus 67 ~---------------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 67 Q---------------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp H---------------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred H---------------------c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1 1 334577888855444455556655553 2567799999875
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.67 E-value=0.031 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999888764
No 292
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.11 Score=49.48 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCCCCccchhhh---hhhccC-CCCCeEEEEEcCChhHHHhccccceee
Q 005860 265 LLESIRASLVGKKFLLILDDMWTDDYSKWEPF---HYCLKN-GVRGSKILVTTRKETVARMMESIHVIS 329 (673)
Q Consensus 265 ~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l---~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~ 329 (673)
.+..+.+.+-=++=|.|||...+ --+.+.+ ...+.. ...|+-++++|..+.++....++.+|-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DS--GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDS--GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCc--CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34556666666777999998833 2334333 222222 345778999999999999876655443
No 293
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.65 E-value=0.054 Score=57.71 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=47.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCC------CCCcCcH-----HHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGF------VPTVGEL-----NSL 265 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~-----~~~ 265 (673)
-..++|+|..|+|||||++.+..... ....++++.--..-++.++....+...... +.+..-. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45799999999999999999987532 222344443222334444444343332111 1111101 111
Q ss_pred HHHHHHHh--CCCeEEEEEcCC
Q 005860 266 LESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 266 ~~~l~~~l--~~kr~LlVLDdv 285 (673)
...+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233333 589999999999
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.028 Score=60.77 Aligned_cols=87 Identities=20% Similarity=0.096 Sum_probs=44.9
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHh
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRASL 273 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 273 (673)
...+|+|+|.+|+||||++..+......+.....+..++.. .+. ..+.+....+.++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 35799999999999999997776532111112345555432 222 2222332233333222222233344444433 3
Q ss_pred CCCeEEEEEcCC
Q 005860 274 VGKKFLLILDDM 285 (673)
Q Consensus 274 ~~kr~LlVLDdv 285 (673)
.+ .=+|++|..
T Consensus 427 ~~-~DLVLIDTa 437 (559)
T PRK12727 427 RD-YKLVLIDTA 437 (559)
T ss_pred cc-CCEEEecCC
Confidence 33 458888877
No 295
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.64 E-value=0.044 Score=55.31 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhc
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987755
No 296
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.045 Score=58.05 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=51.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH-HHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE-LRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+.. ..+.++++-+.+.... .++..+++..-+.. ..+..-. .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998742 2256666777765443 44555544331111 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122244444 689999999999
No 297
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.077 Score=52.35 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeec
Q 005860 267 ESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISI 330 (673)
Q Consensus 267 ~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 330 (673)
-.+...+-.++-+++||+..+. |....+.+...+.....|..||++|.+...... ..+.+.+
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 3455666777889999987432 222233344444332226678898888776653 4445444
No 298
>PTZ00301 uridine kinase; Provisional
Probab=95.62 E-value=0.0085 Score=57.61 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988763
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.61 E-value=0.064 Score=52.93 Aligned_cols=49 Identities=14% Similarity=0.402 Sum_probs=34.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHH-hcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFA-YNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v-~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
+.-.++.|.|.+|+|||++|.++ ++. . ..-..++||+..+ ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 44689999999999999999654 442 2 2345788888765 455555543
No 300
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.13 Score=56.55 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=62.4
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHH
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKA 247 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 247 (673)
+.+=.|+++-+++|++++.-..-. +..+-+++..+|++|||||++|+.|... ....| +-++|+.-.|..+|-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLr-gs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLR-GSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhc-ccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 356689999999999998433210 0234689999999999999999999885 33333 12456665555443211
Q ss_pred HHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 248 IIEALEGFVPTVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 248 i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
=-..+ ..-...+.+.++.. +..+-|+.||.|
T Consensus 484 RRTYV------GAMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 484 RRTYV------GAMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ceeee------ccCChHHHHHHHhh-CCCCceEEeehh
Confidence 00000 01112233333322 345668888988
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.60 E-value=0.0081 Score=46.44 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988875
No 302
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.59 E-value=0.041 Score=58.80 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=45.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH--HHHHHHHHHHhhCCC---CCcCcHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE--LRIAKAIIEALEGFV---PTVGELNSLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 270 (673)
...++.++|.+|+||||+|..+......+..+ .+..|++ +.+.+ .+.+....+.++.+. ....+..++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~-D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVAC-DLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEec-cccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 36799999999999999986666531111122 2333433 22332 233344444444331 11223334443333
Q ss_pred HHhCCCeE-EEEEcCC
Q 005860 271 ASLVGKKF-LLILDDM 285 (673)
Q Consensus 271 ~~l~~kr~-LlVLDdv 285 (673)
+....+.| +||+|-.
T Consensus 176 ~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33434444 7777765
No 303
>PRK05439 pantothenate kinase; Provisional
Probab=95.59 E-value=0.058 Score=54.92 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=43.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCcccccc--CCeEEEEEcCCcccHHHHHHHHHHHhh--CCCCCcCcHHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEY--FDKRMWVCVSDPFDELRIAKAIIEALE--GFVPTVGELNSLLESIR 270 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~ 270 (673)
....+|||.|.+|+||||+|+.+..- .... -..+.-++..+=+...+.+.. ..+. ...+..-+.+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHH
Confidence 45789999999999999999888763 2221 122334443332222222211 0111 11233456666666666
Q ss_pred HHhCCCe
Q 005860 271 ASLVGKK 277 (673)
Q Consensus 271 ~~l~~kr 277 (673)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=95.58 E-value=0.043 Score=58.64 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=45.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHH--HHHHHHHHHhhCC---CCCcCcHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDEL--RIAKAIIEALEGF---VPTVGELNSLLESI 269 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~~~~~l 269 (673)
...+|.++|.+|+||||+|..+... ..... ..+..|+. +.+.+. +-++...+..+.+ .....+..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~-D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAA-DVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEc-cccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 3689999999999999987666553 22221 22334433 333332 2334445554432 11122344444434
Q ss_pred HHHhCCCeE-EEEEcCC
Q 005860 270 RASLVGKKF-LLILDDM 285 (673)
Q Consensus 270 ~~~l~~kr~-LlVLDdv 285 (673)
.+..+.+.| +||+|-.
T Consensus 176 ~~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 176 LEEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 344444444 6777765
No 305
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.57 E-value=0.027 Score=58.40 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=37.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|....+.++.+.+..-. ..-.-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-----~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-----PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 358999998888888775543 12235789999999999999999874
No 306
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.013 Score=64.48 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=61.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.+=.|.++-+++|+++|.-..-.. .-.-.++.+||++|+|||+|++.|.+. ....| +-++++.--|..+|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-KLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-cCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHh----
Confidence 456899999999999984322100 134579999999999999999999984 44455 22344444343332
Q ss_pred HHHhhCCCCC--cCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 249 IEALEGFVPT--VGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 249 ~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
.++... ..-...+.+.+++ .+.++-+++||.+
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEI 426 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEI 426 (782)
T ss_pred ----ccccccccccCChHHHHHHHH-hCCcCCeEEeech
Confidence 111100 0111222233332 2456778999988
No 307
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.57 E-value=0.023 Score=62.69 Aligned_cols=52 Identities=27% Similarity=0.249 Sum_probs=34.7
Q ss_pred CcceechhhHHHHHHHhc---cCCc--ccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLL---CESS--EEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~---~~~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++++|.++.++++.+.+. .... ..+....+-+.++|++|+|||+||+++.+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 478898887766655443 1110 000122345889999999999999999985
No 308
>PRK06547 hypothetical protein; Provisional
Probab=95.56 E-value=0.015 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999774
No 309
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.01 Score=56.35 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+.+|||.|.+|+||||+|+.+++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999985
No 310
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.06 Score=55.60 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChh-HHHhc-cccceeecCCCCcccc
Q 005860 276 KKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKET-VARMM-ESIHVISIKELSEQEC 338 (673)
Q Consensus 276 kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~ 338 (673)
++=++|+|++..-+...-+.+...+.....+..+|++|.+.. +...+ .-...+.+.+++.++.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~ 177 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEA 177 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHH
Confidence 334456688855555556666666665445666777777644 33332 2256777888877664
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0063 Score=35.10 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=13.2
Q ss_pred CccEEEeccCCCCccccccccc
Q 005860 597 NLQVLEIEQCTSLKRLPLGIGK 618 (673)
Q Consensus 597 ~L~~L~l~~c~~l~~lP~~i~~ 618 (673)
+|++|+|++|. +..+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46677777663 6666666554
No 312
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.53 E-value=0.13 Score=53.58 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 176 EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 3 ~~a~~la~~I~~~~----~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 3 PYAKALAEIIKNPD----SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHHHhccC----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566667776553 245789999999999999999998885
No 313
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.53 E-value=0.097 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999874
No 314
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.51 E-value=0.015 Score=62.10 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=37.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++||++.++.+...+..+. -|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~---------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC---------CEEEECCCChhHHHHHHHHHHH
Confidence 468999999999998887665 4889999999999999999984
No 315
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.49 E-value=0.028 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999996
No 316
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.48 E-value=0.062 Score=51.49 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=60.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE-------------------cCCcccH--HHHHHHHHHHhhCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC-------------------VSDPFDE--LRIAKAIIEALEGF 255 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------------------vs~~~~~--~~~~~~i~~~l~~~ 255 (673)
-.+++|+|..|.|||||.+.+....... .-.+.+.+. +.+.... .....+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~--- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYE-VTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCC-CCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---
Confidence 3689999999999999999988852100 001111110 1111100 00111111111
Q ss_pred CCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCC-CCCeEEEEEcCChhHHH
Q 005860 256 VPTVGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNG-VRGSKILVTTRKETVAR 320 (673)
Q Consensus 256 ~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 320 (673)
......-+...-.+...+-..+=++++|+.-.. |....+.+...+... ..|..||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 011122223334456666677789999987321 222233333333321 23667899998877665
No 317
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.44 E-value=0.19 Score=48.26 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=66.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccc---cCCe-EEEEEcCC---------------cccHHHHHHHHHHH------
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFE---YFDK-RMWVCVSD---------------PFDELRIAKAIIEA------ 251 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~-~~wv~vs~---------------~~~~~~~~~~i~~~------ 251 (673)
-.+++|+|..|.|||||++.+........ .|+. +.++.-.. .++... .....+.
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~-~~~~~~~~~l~~~ 109 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER-YEKVIKACALEPD 109 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH-HHHHHHHcCcHHH
Confidence 45899999999999999999988532211 1222 23331110 111111 1111111
Q ss_pred hhCC-----------CCCcCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-Cccchhhhhhh-cc-CCCCCeEEEEEcCChh
Q 005860 252 LEGF-----------VPTVGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYC-LK-NGVRGSKILVTTRKET 317 (673)
Q Consensus 252 l~~~-----------~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~-l~-~~~~gs~iivTtr~~~ 317 (673)
+... ......-+...-.+...+..++=++++|+--+. |....+.+... +. ....|..||++|.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 110 LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred HHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 1110 011112233344566677778889999986332 22222334332 22 2234778899998876
Q ss_pred HHHhccccceeec
Q 005860 318 VARMMESIHVISI 330 (673)
Q Consensus 318 v~~~~~~~~~~~l 330 (673)
.... ..+++.+
T Consensus 190 ~~~~--~d~i~~l 200 (204)
T cd03250 190 LLPH--ADQIVVL 200 (204)
T ss_pred HHhh--CCEEEEE
Confidence 6654 3444443
No 318
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.43 E-value=0.098 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999975
No 319
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.42 E-value=0.08 Score=60.30 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..|+|+|..|+|||||+|.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998873
No 320
>PRK06762 hypothetical protein; Provisional
Probab=95.42 E-value=0.011 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 321
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.41 E-value=0.012 Score=52.92 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999886
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.40 E-value=0.12 Score=56.20 Aligned_cols=129 Identities=24% Similarity=0.294 Sum_probs=73.1
Q ss_pred eEEEEEEccCCChHHH-HHHHHhcCccccccC--CeEEEEEcCCcccHHHHHHHHHHHhhCCCC----------Cc----
Q 005860 197 IQIITIVGMGGIGKTT-LAQFAYNDSDVFEYF--DKRMWVCVSDPFDELRIAKAIIEALEGFVP----------TV---- 259 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~---- 259 (673)
..||.|||-.|+|||| |||.+|.+ .| .+.+-++-....-+-.+.+.+.+.++..-. +.
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4699999999999998 56999986 23 233333333333344567777777754311 10
Q ss_pred ------CcHHHHHHHHHHHhCCCeEEEEEcCCCCCCccchhhhhhhcc---CCCCCeEEEEEcCChh---HHHhccccce
Q 005860 260 ------GELNSLLESIRASLVGKKFLLILDDMWTDDYSKWEPFHYCLK---NGVRGSKILVTTRKET---VARMMESIHV 327 (673)
Q Consensus 260 ------~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~---~~~~gs~iivTtr~~~---v~~~~~~~~~ 327 (673)
.+---+.+.+....-.|=-.||+|...... ..-+.+.+.+. .....-|+||||-..+ .++..+....
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~ 524 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQ 524 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCce
Confidence 111223344444444555689999985432 23333444333 2345679999987544 4455554444
Q ss_pred eecC
Q 005860 328 ISIK 331 (673)
Q Consensus 328 ~~l~ 331 (673)
+.++
T Consensus 525 f~Ip 528 (1042)
T KOG0924|consen 525 FTIP 528 (1042)
T ss_pred eeec
Confidence 4443
No 323
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.082 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 324
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.14 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|..|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999875
No 325
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.1 Score=54.15 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=52.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRAS 272 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 272 (673)
...+++.|+|+.|+||||++..+... ....-..+.+|+.. ++. ..+-++...+.++.......+.+++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 34689999999999999999777754 22222345566543 332 24455555555554322234455555555443
Q ss_pred hC-CCeEEEEEcCCC
Q 005860 273 LV-GKKFLLILDDMW 286 (673)
Q Consensus 273 l~-~kr~LlVLDdvw 286 (673)
-. +..=+|++|-.-
T Consensus 281 ~~~~~~D~VLIDTAG 295 (407)
T PRK12726 281 TYVNCVDHILIDTVG 295 (407)
T ss_pred HhcCCCCEEEEECCC
Confidence 21 345678888773
No 326
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.36 E-value=0.074 Score=55.90 Aligned_cols=82 Identities=27% Similarity=0.233 Sum_probs=48.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCC-----cCcHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPT-----VGELNSLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 270 (673)
.-.++.|.|.+|+|||||+.++... ....-..++|++..+. ...+ ..-++.++...+. ..+++.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3579999999999999999877764 2233356778876543 3332 2223444432211 123444444432
Q ss_pred HHhCCCeEEEEEcCC
Q 005860 271 ASLVGKKFLLILDDM 285 (673)
Q Consensus 271 ~~l~~kr~LlVLDdv 285 (673)
..+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668899987
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.024 Score=52.98 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999886
No 328
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.028 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=22.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999885
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.031 Score=49.95 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=33.1
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCC
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGF 255 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 255 (673)
+|.|-|++|+||||+|+.+.++.-. . +| +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--K-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--c-----ee------eccHHHHHHHHHcCCC
Confidence 6899999999999999999985322 1 12 3345888898887654
No 330
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.29 E-value=0.057 Score=62.22 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=37.0
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++|....+.++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a-----~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA-----QSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh-----CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 479999988888877664332 12245889999999999999999985
No 331
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.25 E-value=0.1 Score=58.27 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.-..++|+|+.|+|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.25 E-value=0.08 Score=53.25 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=46.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHH--HHHHHHHHHhhCC---CCCcCcHHH-HHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDEL--RIAKAIIEALEGF---VPTVGELNS-LLESI 269 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~---~~~~~~~~~-~~~~l 269 (673)
..++|.++|++|+||||++..+... ....-..+..++.. .+... +-+....+..+.. .....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999999998777653 22222345555433 33332 3333344444422 111122222 22334
Q ss_pred HHHhCCCeEEEEEcCC
Q 005860 270 RASLVGKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~~kr~LlVLDdv 285 (673)
........=+|++|-.
T Consensus 148 ~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 148 QKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 4434444557888866
No 333
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.20 E-value=0.15 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999985
No 334
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.19 E-value=0.085 Score=52.96 Aligned_cols=142 Identities=21% Similarity=0.193 Sum_probs=76.6
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC-ccccccCCeEEEEEcCCcccH-HHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND-SDVFEYFDKRMWVCVSDPFDE-LRIAK 246 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~~~~ 246 (673)
..++|-.++.+++..++....-. ++-.-|.|+|+.|.|||+|.-.+..+ .++.++ .+-|........ +-.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~---gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH---GESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALK 97 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh---cCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHH
Confidence 46889888888888877443210 12235788999999999998777665 123333 344455444332 22444
Q ss_pred HHHHHhhC----CCCCcCcHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcc-chhhhhhhcc----CCCCCeEEEE
Q 005860 247 AIIEALEG----FVPTVGELNSLLESIRASLV------GKKFLLILDDMWTDDYS-KWEPFHYCLK----NGVRGSKILV 311 (673)
Q Consensus 247 ~i~~~l~~----~~~~~~~~~~~~~~l~~~l~------~kr~LlVLDdvw~~~~~-~~~~l~~~l~----~~~~gs~iiv 311 (673)
.|.+++.. ......+..+....+-..|+ +-++..|+|.+.-.-.. .-..+...+. ...+=+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 55555433 22333334444445555553 34688888876111000 0011222222 2355677888
Q ss_pred EcCCh
Q 005860 312 TTRKE 316 (673)
Q Consensus 312 Ttr~~ 316 (673)
|||-.
T Consensus 178 Ttrld 182 (408)
T KOG2228|consen 178 TTRLD 182 (408)
T ss_pred ecccc
Confidence 99853
No 335
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.18 E-value=0.034 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998884
No 336
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.079 Score=60.15 Aligned_cols=86 Identities=23% Similarity=0.230 Sum_probs=50.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc--HHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD--ELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
.+||+++|+.|+||||++.++.........-..+..++. +.+. ..+.++...+.++.......+.+++...+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hhc
Confidence 479999999999999999888764221111124445543 3333 345555666666554433345555555554 344
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
++. +|++|-.
T Consensus 263 ~~D-~VLIDTA 272 (767)
T PRK14723 263 DKH-LVLIDTV 272 (767)
T ss_pred CCC-EEEEeCC
Confidence 443 7777866
No 337
>PRK03839 putative kinase; Provisional
Probab=95.16 E-value=0.014 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|+|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999985
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.16 E-value=0.012 Score=56.46 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|.+|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998774
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.14 E-value=0.015 Score=54.99 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+..+|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998863
No 340
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.086 Score=53.41 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=58.3
Q ss_pred cceechhhHHHHHHHhccCCccc------ccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEE------IINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELR 243 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (673)
++=|-++.+++|.+...-+-.+. +-..++=|.++|++|.|||-||++|.+. .... |+.|..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH-----
Confidence 56678988988888764432100 2345677899999999999999999996 3233 4444432
Q ss_pred HHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC-CCeEEEEEcCC
Q 005860 244 IAKAIIEALEGFVPTVGELNSLLESIRASLV-GKKFLLILDDM 285 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVLDdv 285 (673)
++.+..-+. -..+...+.+.-+ ..+..|.+|.+
T Consensus 220 ---ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 220 ---ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred ---HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEech
Confidence 122222111 1223334444433 56889999988
No 341
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.11 E-value=0.032 Score=52.41 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 342
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.09 Score=55.87 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=44.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC-cccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD-PFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
...+|+++|..|+||||++..+..........+.+..+.... .....+-+....+.++.......+..+....+ ..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 357999999999999999976655311111223334443222 12223334444455544433333333333222 2344
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 44 34666655
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.10 E-value=0.19 Score=50.76 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=36.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 252 (673)
-.++.|.|.+|+||||++.++.... ...+=..++|+++.. ...++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 4588899999999999998776642 122134678887765 4455666665554
No 344
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.07 E-value=0.048 Score=56.54 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=32.9
Q ss_pred ceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 171 IRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++|....++++.+.+..-. ..-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a-----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777776664433 12234789999999999999999874
No 345
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.0037 Score=61.13 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=16.6
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeecc
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIAT 552 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 552 (673)
-.+|+.|+++.+.. -......-.+.+++.|..|+|++
T Consensus 233 N~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsW 269 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSW 269 (419)
T ss_pred cccceeeccccccc--cchhHHHHHHHhhhhHhhcCchH
Confidence 34455555544431 01122333455555555555555
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.03 E-value=0.083 Score=52.87 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
+.-.++.|.|.+|+||||+|.++.... . ..=..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecC
Confidence 345799999999999999997654321 1 2234678888764
No 347
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.03 E-value=0.033 Score=64.69 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=37.7
Q ss_pred CcceechhhHHHHHHHhccCCcc-c-----ccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSE-E-----IINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+++.|.+..++++.+++...-.. + +-...+-|.++|++|+||||||+++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 45889999999988876432100 0 0123456889999999999999999885
No 348
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.02 E-value=0.12 Score=53.11 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=48.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+... -+..++..+... -++.++.......-... ..+.... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999998532 233444444432 34444444444432111 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233333 589999999998
No 349
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.02 E-value=0.04 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+|+|++|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999884
No 350
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.02 E-value=0.022 Score=57.32 Aligned_cols=88 Identities=30% Similarity=0.348 Sum_probs=47.6
Q ss_pred HHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHH-hhCCCC
Q 005860 179 SSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEA-LEGFVP 257 (673)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~ 257 (673)
..+++.+.... +-+.++|+.|+|||++++...+...- ..| ...-++.|...+...++. +++. +.....
T Consensus 23 ~~ll~~l~~~~--------~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~~ 91 (272)
T PF12775_consen 23 SYLLDLLLSNG--------RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQK-IIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHCT--------EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHH-CCCTTECECTT
T ss_pred HHHHHHHHHcC--------CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCCC
Confidence 45555555443 45689999999999999887764221 111 234456666555544432 2221 111000
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 005860 258 TVGELNSLLESIRASLVGKKFLLILDDMWT 287 (673)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~ 287 (673)
. ...--.+|+.++.+||+--
T Consensus 92 --~--------~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 92 --R--------VYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp --E--------EEEEESSSEEEEEEETTT-
T ss_pred --C--------CCCCCCCcEEEEEecccCC
Confidence 0 0000146899999999933
No 351
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.00 E-value=0.022 Score=55.61 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|.|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998774
No 352
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.98 E-value=0.11 Score=55.25 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=49.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCC-------CCCcCcHH-----
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGF-------VPTVGELN----- 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (673)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+.. .+.+++.+....=... ..+..-..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999999853 34455666555543 3334444443210000 01111111
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1122234444 589999999999
No 353
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.94 E-value=0.03 Score=50.67 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=27.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC 234 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 234 (673)
..||-|.|.+|+||||||+++.+. ....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 368999999999999999999985 444444556653
No 354
>PRK04040 adenylate kinase; Provisional
Probab=94.94 E-value=0.018 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999998884
No 355
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.091 Score=52.38 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=47.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccc--ccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVF--EYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
.++|.++|++|.|||+|.+++++...++ ..+.....+.++. ..++.+-... .......+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 5899999999999999999999975443 3343333343322 1222222111 11233455566666666
Q ss_pred CCe--EEEEEcCC
Q 005860 275 GKK--FLLILDDM 285 (673)
Q Consensus 275 ~kr--~LlVLDdv 285 (673)
++. +++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 45568888
No 356
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.91 E-value=0.055 Score=56.80 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=49.0
Q ss_pred CcceechhhHHHHHHHhccC-------CcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC---CeEEEEEcCCc
Q 005860 169 SEIRGRDEEKSSLKSKLLCE-------SSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF---DKRMWVCVSDP 238 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~ 238 (673)
..++|.++.++.+...+... ..-......+-|.++|++|+|||++|+.+.... ...| +..-|+..+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcc
Confidence 46888888888776665432 000001224678999999999999999998853 2333 33323322222
Q ss_pred -ccHHHHHHHHHHHh
Q 005860 239 -FDELRIAKAIIEAL 252 (673)
Q Consensus 239 -~~~~~~~~~i~~~l 252 (673)
.+...+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 25556666655543
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.91 E-value=0.031 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=22.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~ 221 (673)
-.+|.+.|.-|+||||+++.+.+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999863
No 358
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.89 E-value=0.019 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 359
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.89 E-value=0.015 Score=54.61 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999885
No 360
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.86 E-value=0.12 Score=55.01 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=47.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCC-------CCCcCcHH-----
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGF-------VPTVGELN----- 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (673)
-..++|+|..|+|||||++.+....+ . +..+.+.+.+. -.+.++..+.+..-+.. ..+..-..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999998532 1 23333333332 23444444443332111 11111111
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344444 589999999999
No 361
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.86 E-value=0.1 Score=55.95 Aligned_cols=88 Identities=18% Similarity=0.087 Sum_probs=52.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-.-++|.|..|+|||||+..+...... .+=+.++++-+.+... +.++..++...=... ..+..-. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999877654221 1114577787776543 445555555431111 1111111 1
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCC
Q 005860 264 SLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
.....+.+++ +++++||++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 2233355555 689999999999
No 362
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.86 E-value=0.026 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999988875
No 363
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.84 E-value=0.016 Score=53.78 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=29.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCcccc-ccCCeEEEEEcCCc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVF-EYFDKRMWVCVSDP 238 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 238 (673)
..++.+.|+.|+|||.||+.+.+. +. ......+-+..+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 568899999999999999998884 22 23345555665543
No 364
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.84 E-value=0.096 Score=56.60 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=44.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc--cHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF--DELRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
.+|++++|+.|+||||++.++......+..-..+..++. +.+ ...+-++...+.++.......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 479999999999999999888864222221223445543 233 233334444454443322112222222222 2334
Q ss_pred CCeEEEEEcCC
Q 005860 275 GKKFLLILDDM 285 (673)
Q Consensus 275 ~kr~LlVLDdv 285 (673)
++ -.+++|-.
T Consensus 334 d~-d~VLIDTa 343 (484)
T PRK06995 334 NK-HIVLIDTI 343 (484)
T ss_pred CC-CeEEeCCC
Confidence 44 36677766
No 365
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.83 E-value=0.053 Score=56.70 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=61.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCe
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKK 277 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr 277 (673)
..|.|.|+.|+||||+++.+.+. +..+...+++. +.++... ..... ..+-.......+.......++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 68999999999999999988874 33344455543 2222111 10000 0000000000111234566777888889
Q ss_pred EEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHH
Q 005860 278 FLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVAR 320 (673)
Q Consensus 278 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (673)
=.|++|.+. +...+... +.....|..|+.|+...++..
T Consensus 197 d~i~vgEir--d~~~~~~~---l~aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 197 DVILIGEMR--DLETVELA---LTAAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CEEEEeCCC--CHHHHHHH---HHHHHcCCcEEEEEcCCCHHH
Confidence 999999994 33334332 222234656777776655443
No 366
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.83 E-value=0.13 Score=54.80 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=50.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH-HHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE-LRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+... .+.++++-+.+.... .++..+.+..-+.. ..+..-. .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999998532 245666767665443 34444443321111 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1222344444 589999999999
No 367
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.81 E-value=0.023 Score=52.71 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=38.3
Q ss_pred hhhCCccceeeeccccccccccchhhhccccccc-cccccceecCCCCcccc--hhhhcCCCccEEEeccCCCCccccc-
Q 005860 539 FDQLKCLRALRIATLMNTWDVNSTNKILKGIEKL-IHLRYLRLVGLGTEELP--ETCCELLNLQVLEIEQCTSLKRLPL- 614 (673)
Q Consensus 539 ~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L-~~Lr~L~L~~~~i~~LP--~~i~~L~~L~~L~l~~c~~l~~lP~- 614 (673)
|..++.|..|.|.+ +.+..+-+.+..+ ++|..|.|.+|+|.+|- ..+..++.|++|.+-+++ ++..+.
T Consensus 60 lp~l~rL~tLll~n-------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~Y 131 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-------NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNY 131 (233)
T ss_pred CCCccccceEEecC-------CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCc
Confidence 34455555555555 5555554444433 33555555555544432 123344455555555433 333322
Q ss_pred ---cccccccCCeeec
Q 005860 615 ---GIGKLVNLRHLTY 627 (673)
Q Consensus 615 ---~i~~L~~Lr~L~l 627 (673)
-+.++++|+.||.
T Consensus 132 R~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDF 147 (233)
T ss_pred eeEEEEecCcceEeeh
Confidence 2455555555554
No 368
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.24 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999975
No 369
>PRK00625 shikimate kinase; Provisional
Probab=94.80 E-value=0.019 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999774
No 370
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.12 Score=58.51 Aligned_cols=150 Identities=24% Similarity=0.280 Sum_probs=79.4
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCc---cccccC-CeEEEEEcCCcccHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDS---DVFEYF-DKRMWVCVSDPFDELRI 244 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~ 244 (673)
+.++||++++.+++..|..... + .+ .++|.+|||||++|.-+.... .+-... +..++.- |
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----N-NP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL-----D---- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----N-NP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL-----D---- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----C-CC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe-----c----
Confidence 4689999999999999976652 2 22 357999999999875444420 121111 2222210 1
Q ss_pred HHHHHHHhhCCCCCcCcHHHHHHHHHHHh-CCCeEEEEEcCCCCC----C-----ccchhhhhhhccCCCCCeEEEEEcC
Q 005860 245 AKAIIEALEGFVPTVGELNSLLESIRASL-VGKKFLLILDDMWTD----D-----YSKWEPFHYCLKNGVRGSKILVTTR 314 (673)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdvw~~----~-----~~~~~~l~~~l~~~~~gs~iivTtr 314 (673)
|..-+.+ ..-..+.++....+.+.+ +.++..+++|.++.- . .+.-+.++..|..+ .--.|=.||-
T Consensus 234 ---~g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 234 ---LGSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred ---HHHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 1111111 122344555444444444 345899999998431 0 11222233333332 2334666776
Q ss_pred ChhHHH------hccccceeecCCCCccccc
Q 005860 315 KETVAR------MMESIHVISIKELSEQECW 339 (673)
Q Consensus 315 ~~~v~~------~~~~~~~~~l~~L~~~~~~ 339 (673)
++.--- ..--...+.++..+.+++.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti 339 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTI 339 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHH
Confidence 543211 0112467788888888875
No 371
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.78 E-value=0.15 Score=54.69 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=51.8
Q ss_pred eEEEEEEccCCChHHHHH-HHHhcCccc-----cccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC------CcCc---
Q 005860 197 IQIITIVGMGGIGKTTLA-QFAYNDSDV-----FEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP------TVGE--- 261 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~--- 261 (673)
-.-++|.|-.|+|||||| -.+.|...+ ..+-+.++++.+.+..+.-.-+.+.+++-+.-.. ..++
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356899999999999997 666665322 1244678899998876543323333333321100 0111
Q ss_pred HH----HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 262 LN----SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 262 ~~----~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.. -....+.+++ +++.+|||+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 00 0112233333 589999999999
No 372
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.77 E-value=0.22 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=22.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.++++.|+.|+|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999985
No 373
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.019 Score=53.86 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=22.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999995
No 374
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.75 E-value=0.037 Score=56.41 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=50.2
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESIR 270 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 270 (673)
.-+++-|+|..|+||||||..+... ....-..++||.....+++. .++.++...+ ..+..++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999777764 44445668999988877664 3344443311 1233344455555
Q ss_pred HHhCC-CeEEEEEcCC
Q 005860 271 ASLVG-KKFLLILDDM 285 (673)
Q Consensus 271 ~~l~~-kr~LlVLDdv 285 (673)
..++. .--+||+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 55543 4458899987
No 375
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.74 E-value=0.23 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHh
Q 005860 198 QIITIVGMGGIGKTTLAQFAY 218 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~ 218 (673)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999887
No 376
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.74 E-value=0.019 Score=55.89 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC---CcCcHHHHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP---TVGELNSLLESIRAS 272 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 272 (673)
+.+++.|+|+.|.||||+.+.+... .-.+..-++|..... . -.+...++..++..+. .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~---~~la~~g~~vpa~~~-~-~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI---VLMAQIGCFVPCDSA-D-IPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH---HHHHHhCCCcCcccE-E-EeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 3579999999999999998887642 111111123322210 0 0122223333322211 111111112223333
Q ss_pred h--CCCeEEEEEcCCCCC----Ccc--chhhhhhhccCCCCCeEEEEEcCChhHHHhc
Q 005860 273 L--VGKKFLLILDDMWTD----DYS--KWEPFHYCLKNGVRGSKILVTTRKETVARMM 322 (673)
Q Consensus 273 l--~~kr~LlVLDdvw~~----~~~--~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 322 (673)
+ -..+-|++||..... |.. .|. +...+.. ..|+.+|+||...++...+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHh
Confidence 3 356889999998321 111 121 1122322 3478899999987776654
No 377
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.18 Score=58.00 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=70.8
Q ss_pred cceechhhHHHHHHHhccCCccccc-CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 170 EIRGRDEEKSSLKSKLLCESSEEII-NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.++|-++.+..|-+.+.....+-.+ .......+.|+.|+|||-||+++... +....+..+-++ ..+... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriD------mse~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLD------MSEFQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEec------hhhhhh-h
Confidence 5778888888888777654421111 25678899999999999999988873 222223333333 333333 3
Q ss_pred HHHhhCCCCCcCcHHHHHHHHHHHhCCCeE-EEEEcCCCCCCccchhhhhhhccC
Q 005860 249 IEALEGFVPTVGELNSLLESIRASLVGKKF-LLILDDMWTDDYSKWEPFHYCLKN 302 (673)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdvw~~~~~~~~~l~~~l~~ 302 (673)
.+.++.+ +..-. .+--..+.+.++.++| +|+||||...+......+...+..
T Consensus 634 skligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 3333332 21111 1123467777888776 556899965555555544455543
No 378
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.72 E-value=0.07 Score=59.59 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=38.8
Q ss_pred cCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 167 DVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 167 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....++|....++++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 44689999999999888775443 11234679999999999999999985
No 379
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.71 E-value=0.16 Score=49.87 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=29.5
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP 238 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (673)
.-.++.|.|.+|+||||||.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45799999999999999997755421 1 22356788876543
No 380
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.71 E-value=0.023 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++|+|+|+.|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999984
No 381
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.41 Score=49.73 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=44.5
Q ss_pred CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHh-ccccceeecCCCCcccc
Q 005860 274 VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARM-MESIHVISIKELSEQEC 338 (673)
Q Consensus 274 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~ 338 (673)
.+++=++|+|++..-+...-+.+...+.....++.+|++|.+. .+... .+-...+.+.+++.++.
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~ 172 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYA 172 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHH
Confidence 3566689999986656667788888888777778777777763 34433 33356677777776653
No 382
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.70 E-value=0.13 Score=46.57 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999886
No 383
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.69 E-value=0.26 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|+|||||++.+...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999885
No 384
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.69 E-value=0.022 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999885
No 385
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.67 E-value=0.036 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999999985
No 386
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.66 E-value=0.016 Score=49.23 Aligned_cols=21 Identities=52% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998875
No 387
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.65 E-value=0.18 Score=47.66 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.7
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998884
No 388
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.65 E-value=0.13 Score=51.01 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=54.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccc--cccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH----
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDV--FEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL---- 262 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~---- 262 (673)
-..++|.|-.|+|||||+..+.++... +.+-+.++++-+.+... ..++..++.+.=... ..+..-.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356899999999999999888875321 12347789998888654 445555544431111 0111101
Q ss_pred -HHHHHHHHHHh---CCCeEEEEEcCC
Q 005860 263 -NSLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 263 -~~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
--....+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11222344554 378999999999
No 389
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.64 E-value=0.2 Score=51.40 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=36.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAI 248 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 248 (673)
-..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3579999999999999999999963 335788888877543 34455554
No 390
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.64 E-value=0.16 Score=50.42 Aligned_cols=82 Identities=22% Similarity=0.187 Sum_probs=48.3
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccccCCeE-EEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----
Q 005860 198 QIITIVGMGGIGKTTLA-QFAYNDSDVFEYFDKR-MWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL----- 262 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~----- 262 (673)
.-++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+..+ +.++...+.+.-... ..+..-.
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 6676631 23444 6777777643 445555554321110 1111101
Q ss_pred ----HHHHHHHHHHhCCCeEEEEEcCC
Q 005860 263 ----NSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 263 ----~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
-...+.++. +++.+|||+||+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122333333 589999999999
No 391
>PRK04328 hypothetical protein; Provisional
Probab=94.63 E-value=0.12 Score=51.38 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=29.7
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP 238 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 238 (673)
.-.++.|.|.+|+|||+||.++... .. ..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 4579999999999999999664432 12 23456788887663
No 392
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.62 E-value=0.18 Score=46.45 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=60.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEE--EEEcCCcccHHHHHHHHHHHhh-----CC----CCCc-Cc---
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRM--WVCVSDPFDELRIAKAIIEALE-----GF----VPTV-GE--- 261 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~vs~~~~~~~~~~~i~~~l~-----~~----~~~~-~~--- 261 (673)
-..|-|++..|.||||.|..+.-.. ....+...+ |+.-.........+..+ .+. .. ..+. .+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 4678888999999999994444321 222222211 22222222333343332 111 00 0011 11
Q ss_pred HHHHHHHHHHHhCCCe-EEEEEcCCCC---CCccchhhhhhhccCCCCCeEEEEEcCCh
Q 005860 262 LNSLLESIRASLVGKK-FLLILDDMWT---DDYSKWEPFHYCLKNGVRGSKILVTTRKE 316 (673)
Q Consensus 262 ~~~~~~~l~~~l~~kr-~LlVLDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 316 (673)
..+.....++.+...+ =|||||.+-. -..-..+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223344555555544 4999998821 11123456666666666778999999975
No 393
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.61 E-value=0.096 Score=58.03 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=39.2
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...++|....++++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----ASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 4679999999988888876544 22345889999999999999999985
No 394
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.61 E-value=0.11 Score=55.90 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=54.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-.-++|+|.+|+|||||+..+.+... +.+-+.++++-+.+..+ +.++..++...-... ..+..-. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35799999999999999977777532 23557888888876543 345555554321110 1111111 1
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCC
Q 005860 264 SLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++|++
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 2233455555 489999999999
No 395
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.60 E-value=0.053 Score=55.79 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=56.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
-..+.|+|..|+|||||++++.... ... ..++.+.-........ .....-...........-...+.+...++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~--~~~-~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI--PKD-ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC--Ccc-ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 3689999999999999999988752 111 1222221111111000 0000000000000011112345566677788
Q ss_pred eEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCChhHHH
Q 005860 277 KFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKETVAR 320 (673)
Q Consensus 277 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 320 (673)
.=.||+|.+.. .+.++.+ .....+..| ++.|+...++..
T Consensus 219 pd~ii~gE~r~--~e~~~~l-~a~~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 219 PDRIILGELRG--DEAFDFI-RAVNTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred CCeEEEeccCC--HHHHHHH-HHHhcCCCe--EEEEEeCCCHHH
Confidence 88899999954 3344432 223222222 577777665444
No 396
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.60 E-value=0.033 Score=64.34 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++.|+|+.|.|||||.+.+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999888653
No 397
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.58 E-value=0.87 Score=40.89 Aligned_cols=111 Identities=10% Similarity=0.156 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHhhhhhhhhH
Q 005860 2 VDAIVSPLLEQLISISLEEAREQMKLVVGIDNEVAKLKHNFLAIQAVLVDAEQRQ-FKEETVRLWLDQLKDVSYYMGDVL 80 (673)
Q Consensus 2 a~a~v~~~~~~l~~~l~~~~~~e~~~~~~~~~~i~~L~~~L~~i~~~l~~a~~~~-~~~~~~~~wl~~lr~~ay~~ed~l 80 (673)
|+.+++++++.+.+.+...+.+..+.....+.-.++|...++.|.-++++.+... .-+..-+.-+.++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666667777888899999999999999887643 223334677888889999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccCCccccCccchhhhHHHHHHHHHHHHHHHHHH
Q 005860 81 DEWNTARLKLRIEGVDALVPQRKVCSFLPAASCFGFSQTFQRRDIAVKIKAINGKLDDIA 140 (673)
Q Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i~ 140 (673)
..|..- .++++....+.+++|+++.+.+....
T Consensus 83 ~k~sk~----------------------------~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 83 EKCSKV----------------------------RRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHhccc----------------------------cHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 988510 01223334556777777777766554
No 398
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.53 E-value=0.021 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998874
No 399
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.53 E-value=0.13 Score=54.59 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+... .+..+++.+.+.. ...++...+...=... ..+..-. .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999988532 2344455555543 2334444333321100 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122233443 589999999999
No 400
>PRK05922 type III secretion system ATPase; Validated
Probab=94.53 E-value=0.24 Score=52.77 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=48.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCCC-------CCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGFV-------PTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~-----~ 263 (673)
-..++|+|..|+|||||.+.+.+.. ..+...++.+++.. ...+.+.+......... .+..-. .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999998852 22444444444432 23344444443322211 111001 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344444 589999999999
No 401
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.53 E-value=0.037 Score=56.51 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=42.7
Q ss_pred CCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 168 VSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 168 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+++|.++.++++++.+...+.. ....-+|+.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQG-LEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhc-cCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999988654421 1355789999999999999999998884
No 402
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.52 E-value=0.066 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=18.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..|.|.|.+|+||||+|+.+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999998884
No 403
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.021 Score=61.69 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=87.9
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
+++||-+.-...|.+.+..+.- ..-....|+-|+||||+|+.+.....-... ....+++.-...+.|
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI------AHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc------hhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhh
Confidence 5789999999999999876642 345677999999999999877663111100 111111111122222
Q ss_pred HHH--hhC---CCCCcCcHHHHHHHHHHHh----CCCeEEEEEcCCCCCCccchhhhhhhccCCCCCeEEEEEcCC-hhH
Q 005860 249 IEA--LEG---FVPTVGELNSLLESIRASL----VGKKFLLILDDMWTDDYSKWEPFHYCLKNGVRGSKILVTTRK-ETV 318 (673)
Q Consensus 249 ~~~--l~~---~~~~~~~~~~~~~~l~~~l----~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 318 (673)
-.. +.. ..-....+++.+..+.+.. ++|-=..|+|.|+--....|+.+...+......-+.|..|.+ ..+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 221 000 0000112223222222221 345558899999777777888888888765555555554444 433
Q ss_pred HH-hccccceeecCCCCcccc
Q 005860 319 AR-MMESIHVISIKELSEQEC 338 (673)
Q Consensus 319 ~~-~~~~~~~~~l~~L~~~~~ 338 (673)
.. ...-...|.++.++.++-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I 183 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEI 183 (515)
T ss_pred chhhhhccccccccCCCHHHH
Confidence 32 334467788888887753
No 404
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.49 E-value=0.14 Score=50.61 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.9
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 005860 199 IITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+..|+|++|+|||+||..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999977654
No 405
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.49 E-value=0.028 Score=50.30 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSD 237 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 237 (673)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999962 224555555555443
No 406
>PRK08149 ATP synthase SpaL; Validated
Probab=94.47 E-value=0.14 Score=54.40 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=49.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+... -+.+++..+.... ++.++..+........ ..+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 45799999999999999999998532 2344444444332 4455555555532211 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ ++|++||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222333443 589999999999
No 407
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.47 E-value=0.3 Score=56.64 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|+.|.|||||++.+...
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 408
>PRK06217 hypothetical protein; Validated
Probab=94.47 E-value=0.025 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhcCc
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~ 221 (673)
.|.|.|.+|+||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998853
No 409
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.42 E-value=0.024 Score=52.68 Aligned_cols=87 Identities=26% Similarity=0.372 Sum_probs=66.5
Q ss_pred ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhh--ccccccccccccceecCCCCcc
Q 005860 510 SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKI--LKGIEKLIHLRYLRLVGLGTEE 587 (673)
Q Consensus 510 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l--p~~i~~L~~Lr~L~L~~~~i~~ 587 (673)
.+..++.|.+|.+.+|.+ ..+-|..-.-+++|.+|.|.+ +.+.++ ...+..++.|+||.+-+|.++.
T Consensus 59 ~lp~l~rL~tLll~nNrI----t~I~p~L~~~~p~l~~L~Ltn-------Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRI----TRIDPDLDTFLPNLKTLILTN-------NSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cCCCccccceEEecCCcc----eeeccchhhhccccceEEecC-------cchhhhhhcchhccCCccceeeecCCchhc
Confidence 455788999999998873 344444445667899999999 887776 3346667899999999998776
Q ss_pred cch----hhhcCCCccEEEeccCC
Q 005860 588 LPE----TCCELLNLQVLEIEQCT 607 (673)
Q Consensus 588 LP~----~i~~L~~L~~L~l~~c~ 607 (673)
.+. -++++++|++||+.+-.
T Consensus 128 k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 128 KKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccCceeEEEEecCcceEeehhhhh
Confidence 653 47889999999998743
No 410
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.39 E-value=0.026 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998885
No 411
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.37 E-value=0.037 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...++|.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45788999999999999999999764
No 412
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.37 E-value=0.25 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..|+|+|..|+|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998774
No 413
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.33 E-value=0.062 Score=58.26 Aligned_cols=85 Identities=22% Similarity=0.185 Sum_probs=48.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEE-EEEcCCcccHHHHHHHHHHHhhC----CCCCcC-----cHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRM-WVCVSDPFDELRIAKAIIEALEG----FVPTVG-----ELNSLL 266 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~-----~~~~~~ 266 (673)
-.-.+|+|.+|+|||||++.|.+... ..+-++.+ ++-|.+..... .+|.+.+.. ...+.. ....+.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 35689999999999999999998521 12334443 44455543222 223333311 111111 112233
Q ss_pred HHHHHHh--CCCeEEEEEcCC
Q 005860 267 ESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 267 ~~l~~~l--~~kr~LlVLDdv 285 (673)
-.+.+++ .++.+||++|++
T Consensus 492 i~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCc
Confidence 3344444 689999999999
No 414
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.0086 Score=58.10 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred ccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchhhhccccccccccccceecCCCCcccc--hh
Q 005860 514 AKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTNKILKGIEKLIHLRYLRLVGLGTEELP--ET 591 (673)
Q Consensus 514 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~LP--~~ 591 (673)
+.+.+-|++.++.. .. -.+...|+.|.||.|+- |.+..+- .+...+.|+.|.|+.|.|..|- .-
T Consensus 18 l~~vkKLNcwg~~L----~D--Isic~kMp~lEVLsLSv-------NkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL----DD--ISICEKMPLLEVLSLSV-------NKISSLA-PLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCc----cH--HHHHHhcccceeEEeec-------cccccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence 45666677777653 11 13457899999999998 8877653 4677789999999999887775 34
Q ss_pred hhcCCCccEEEeccCCCCcccccc-----ccccccCCeee
Q 005860 592 CCELLNLQVLEIEQCTSLKRLPLG-----IGKLVNLRHLT 626 (673)
Q Consensus 592 i~~L~~L~~L~l~~c~~l~~lP~~-----i~~L~~Lr~L~ 626 (673)
+.+|++|++|+|..++...+-+.. +.-|+||+.||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 667888999999877655555443 45677777776
No 415
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.32 E-value=0.029 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++|.+.|++|+||||+|+.+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 416
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.31 E-value=0.031 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=22.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999885
No 417
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.31 E-value=0.23 Score=52.90 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcHH-----
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGELN----- 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~----- 263 (673)
-..++|.|..|+|||||.+.+++... -+.++++-+.+..+ +.++....+..-+.. ..+..-..
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999999632 35678887877643 333333322221110 11111111
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233443 689999999999
No 418
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.30 E-value=0.22 Score=53.21 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=48.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+.. ..+.+++..+.... +..++...+...-... ..+..-. .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998742 22344444444433 3344444443331111 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 1122334444 689999999999
No 419
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.29 E-value=0.071 Score=53.47 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAII 249 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 249 (673)
+.-+++.|+|.+|+|||++|.++... .......++||+..+. +.++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 44689999999999999999555553 4455888999998774 444444433
No 420
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.29 E-value=0.027 Score=56.54 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=85.8
Q ss_pred cCceEEEEEEcCCCCcccc-----ccccccccchhhhccchhhhhhhhhHHHHhhhCCccceeeeccccccccccchh--
Q 005860 491 QEKLRHSMLVLGYEASFPI-----SIFKAKNLRSLFINNTLIQVSLTHVLQSLFDQLKCLRALRIATLMNTWDVNSTN-- 563 (673)
Q Consensus 491 ~~~~r~l~l~~~~~~~~~~-----~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-- 563 (673)
..++|.+..+.+.....+. .+...+.|..+.+..+.+.+.-...+...|..+++|++|||.. |.++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-------Ntft~e 228 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-------NTFTLE 228 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-------chhhhH
Confidence 4567777666665433222 2334567777777776653333345556677888999999988 6533
Q ss_pred ---hhccccccccccccceecCCCCcc-----cchhhh-cCCCccEEEeccCCCCc-----cccccccccccCCeeeccc
Q 005860 564 ---KILKGIEKLIHLRYLRLVGLGTEE-----LPETCC-ELLNLQVLEIEQCTSLK-----RLPLGIGKLVNLRHLTYDD 629 (673)
Q Consensus 564 ---~lp~~i~~L~~Lr~L~L~~~~i~~-----LP~~i~-~L~~L~~L~l~~c~~l~-----~lP~~i~~L~~Lr~L~l~~ 629 (673)
.+...++.+++|+.|+++.|.++. +-..+. ..++|++|.+.+|. +. .+-..+...+.|+.|++++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 345567778888888888887532 122222 35789999988875 42 2333456677888888888
Q ss_pred ccc
Q 005860 630 SCL 632 (673)
Q Consensus 630 ~~l 632 (673)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 876
No 421
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.28 E-value=0.029 Score=50.64 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+|.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 422
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.27 E-value=0.034 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999775
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.26 E-value=0.04 Score=46.33 Aligned_cols=22 Identities=41% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEEEEccCCChHHHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAY 218 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~ 218 (673)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 424
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.26 E-value=0.11 Score=48.29 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=43.9
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCC---cCcHHHHHHHHHHHhCC
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPT---VGELNSLLESIRASLVG 275 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~ 275 (673)
++.|.|.+|+||||+|..+..... ...+++.-...++. +....|.......... .....++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999988876411 12445554444333 4445554443332221 11112334444443333
Q ss_pred CeEEEEEcCC
Q 005860 276 KKFLLILDDM 285 (673)
Q Consensus 276 kr~LlVLDdv 285 (673)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 23 6888987
No 425
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.034 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.++||+|..|+|||||++.+.--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 358999999999999999999874
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.25 E-value=0.29 Score=47.52 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=58.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC---Cc----CcHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP---TV----GELNSLLESI 269 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~~~~~l 269 (673)
.+++.|.|+.|.||||+.+.+.-.. +..+-...+|.. . .. -..+.+|...++..+. .. .++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~--~-~~-~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPAS--S-AT-LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcC--c-eE-EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4688999999999999998887731 111111112211 0 00 0011111111111111 11 1222333333
Q ss_pred HHHhCCCeEEEEEcCCCCCCc----cc-hhhhhhhccCCCCCeEEEEEcCChhHHHhc
Q 005860 270 RASLVGKKFLLILDDMWTDDY----SK-WEPFHYCLKNGVRGSKILVTTRKETVARMM 322 (673)
Q Consensus 270 ~~~l~~kr~LlVLDdvw~~~~----~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 322 (673)
+. .+++-|++||....... .. -..+...+... .++.+|++|.+..++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22 25789999999743211 11 11222333322 578999999998887654
No 427
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.23 E-value=0.02 Score=49.57 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHhcCccccccCC
Q 005860 200 ITIVGMGGIGKTTLAQFAYNDSDVFEYFD 228 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 228 (673)
|-|+|.+|+||||+|+.+... +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999985 555664
No 428
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.20 E-value=0.032 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|+|+|+.|+|||||++.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999885
No 429
>PRK04132 replication factor C small subunit; Provisional
Probab=94.19 E-value=0.27 Score=56.88 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=70.6
Q ss_pred cCCChHHHHHHHHhcCccccccC-CeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCCeEEEEEc
Q 005860 205 MGGIGKTTLAQFAYNDSDVFEYF-DKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGKKFLLILD 283 (673)
Q Consensus 205 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLD 283 (673)
+.++||||+|.+++++. ..+.+ ..++-++.|+..... ..+++++.+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999962 11222 235677777754544 333444433221110 01245799999
Q ss_pred CCCCCCccchhhhhhhccCCCCCeEEEEEcCCh-hHHHh-ccccceeecCCCCccc
Q 005860 284 DMWTDDYSKWEPFHYCLKNGVRGSKILVTTRKE-TVARM-MESIHVISIKELSEQE 337 (673)
Q Consensus 284 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~L~~~~ 337 (673)
++..-+....+.|...+......+++|++|.+. .+... ..-...+.+++++.++
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~ 693 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 693 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHH
Confidence 996666667777887777655667777766653 23222 2225677888877654
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.17 E-value=0.21 Score=54.87 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=55.6
Q ss_pred HHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCC-
Q 005860 178 KSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFV- 256 (673)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~- 256 (673)
++.+.++|..+- ..-.++.|.|.+|+|||||+.++... ....-..++|++.-+ ++.++...+ +.++-..
T Consensus 249 i~~lD~~lgGG~-----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~ 318 (484)
T TIGR02655 249 VVRLDEMCGGGF-----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRNA-YSWGIDFE 318 (484)
T ss_pred hHhHHHHhcCCc-----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChH
Confidence 455555554432 44689999999999999999666553 222335677877655 444555543 3333211
Q ss_pred --------------CCcCcHHHHHHHHHHHhCC-CeEEEEEcCC
Q 005860 257 --------------PTVGELNSLLESIRASLVG-KKFLLILDDM 285 (673)
Q Consensus 257 --------------~~~~~~~~~~~~l~~~l~~-kr~LlVLDdv 285 (673)
+.....++....+.+.+.. +.-.||+|.+
T Consensus 319 ~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 319 EMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred HHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 1112234445555555533 3446677766
No 431
>PRK13409 putative ATPase RIL; Provisional
Probab=94.17 E-value=0.28 Score=55.24 Aligned_cols=131 Identities=18% Similarity=0.103 Sum_probs=67.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE-----EcCCc------ccHHHH-------------HHHHHHHh
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV-----CVSDP------FDELRI-------------AKAIIEAL 252 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~vs~~------~~~~~~-------------~~~i~~~l 252 (673)
-.+++|+|..|+|||||++.+...... ..+.+++ .+.+. .++.+. ..++++.+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 358999999999999999999875321 1122211 11221 122222 12233333
Q ss_pred hCCC---C---CcCcHHHHHHHHHHHhCCCeEEEEEcCCCC-CCccchhhhhhhccCC--CCCeEEEEEcCChhHHHhcc
Q 005860 253 EGFV---P---TVGELNSLLESIRASLVGKKFLLILDDMWT-DDYSKWEPFHYCLKNG--VRGSKILVTTRKETVARMME 323 (673)
Q Consensus 253 ~~~~---~---~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~ 323 (673)
+... . ....-+...-.+...+....-+++||.--+ -|...-..+...+... ..|..||++|.+...+..+.
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 3211 0 111112233345566677788999997622 1222223333333322 23667999999877665533
Q ss_pred ccceeecC
Q 005860 324 SIHVISIK 331 (673)
Q Consensus 324 ~~~~~~l~ 331 (673)
.+++.++
T Consensus 522 -Drvivl~ 528 (590)
T PRK13409 522 -DRLMVFE 528 (590)
T ss_pred -CEEEEEc
Confidence 3455444
No 432
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.17 E-value=0.29 Score=53.82 Aligned_cols=132 Identities=17% Similarity=0.123 Sum_probs=73.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcc-----cc-ccCCeEEEEEcCC-----cccH------------HHHHHHHHHHhhC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSD-----VF-EYFDKRMWVCVSD-----PFDE------------LRIAKAIIEALEG 254 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~-~~F~~~~wv~vs~-----~~~~------------~~~~~~i~~~l~~ 254 (673)
..|+|+|+.|+|||||.+.+..... +. ..--.+.|+.-.. .-++ ..-.+..+..++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 4799999999999999999955311 11 0001122221111 0001 2333344444443
Q ss_pred CCCC-------cCcHHHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccc
Q 005860 255 FVPT-------VGELNSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIH 326 (673)
Q Consensus 255 ~~~~-------~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 326 (673)
.... ...-+..+-.+...+-.+.-++|||.--++ |.+..+.+...+... +| .||++|.++.....+. ..
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~~ 505 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-TR 505 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-ce
Confidence 3221 111233444566667788899999976321 233455566666554 35 4999999998887755 44
Q ss_pred eeecCC
Q 005860 327 VISIKE 332 (673)
Q Consensus 327 ~~~l~~ 332 (673)
++.+.+
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 555553
No 433
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.17 E-value=0.11 Score=48.13 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=45.0
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCC--C
Q 005860 199 IITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVG--K 276 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k 276 (673)
++.|.|..|+|||++|.++... ....++|+.-...++.+ ....|.+..... +......+....+.+.+.. +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCC
Confidence 3679999999999999877653 22467788777766553 444444432222 1111111222233333321 2
Q ss_pred eEEEEEcCC
Q 005860 277 KFLLILDDM 285 (673)
Q Consensus 277 r~LlVLDdv 285 (673)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 434
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.16 E-value=0.083 Score=55.55 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=49.0
Q ss_pred CcceechhhHHHHHHHhccC-------CcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccC---CeEEEEEcCC-
Q 005860 169 SEIRGRDEEKSSLKSKLLCE-------SSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYF---DKRMWVCVSD- 237 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~- 237 (673)
..++|.++.++.+...+... ...........|.++|+.|+||||||+.+.... ...| +...|...+.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l--~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh--CChheeecchhhccCCcc
Confidence 46899999888888777431 000000123678999999999999999988852 2223 3332332221
Q ss_pred cccHHHHHHHHHHHh
Q 005860 238 PFDELRIAKAIIEAL 252 (673)
Q Consensus 238 ~~~~~~~~~~i~~~l 252 (673)
..+...+.+++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 124555555555544
No 435
>PRK13949 shikimate kinase; Provisional
Probab=94.14 E-value=0.033 Score=51.77 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999885
No 436
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.14 E-value=0.18 Score=53.76 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=62.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCC-------CCCcCc-----HH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGF-------VPTVGE-----LN 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 263 (673)
-..++|+|..|+|||||++.+....+. ...++ ..+.+. ..+.++..+.+..-+.. ..+... ..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI-~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVI-SLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEE-EeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999886322 12233 233333 45556655555442211 111110 11
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCCccchhhhhhhccC-CCCCeEEEEEcCChhHHHhc
Q 005860 264 SLLESIRASL--VGKKFLLILDDMWTDDYSKWEPFHYCLKN-GVRGSKILVTTRKETVARMM 322 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~ 322 (673)
.....+.+++ +++++||++||+-.- ......+...+.. ...|--..+.|....++...
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~-a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF-ADARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH-HHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 1222333333 589999999999321 1122223222211 11255556655555555543
No 437
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.13 E-value=0.057 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+..+|+|.|..|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 45789999999999999999999874
No 438
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.12 E-value=0.08 Score=49.02 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=32.3
Q ss_pred ceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 171 IRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 171 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
++|....+.++++.+..-.. .+.+ |.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~p-VlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLP-VLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS--EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCC-EEEEcCCCCcHHHHHHHHHHh
Confidence 46778888888877754431 2233 569999999999999999995
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.11 E-value=0.18 Score=49.43 Aligned_cols=48 Identities=23% Similarity=0.215 Sum_probs=31.4
Q ss_pred CeEEEEEEccCCChHHHHHH-HHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 196 DIQIITIVGMGGIGKTTLAQ-FAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
.-.++.|.|..|+||||||. .++.- .+.. ..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF--LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999984 44442 1222 3567776433 455666665
No 440
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.10 E-value=0.2 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999883
No 441
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.10 E-value=0.12 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999988864
No 442
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.09 E-value=0.33 Score=53.43 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCC-CccchhhhhhhccCCCCCeEEEEEcCChhHHHhccccceeecC
Q 005860 263 NSLLESIRASLVGKKFLLILDDMWTD-DYSKWEPFHYCLKNGVRGSKILVTTRKETVARMMESIHVISIK 331 (673)
Q Consensus 263 ~~~~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~ 331 (673)
+..+-.|.+.|-.++=+++||.--+. |.....=+...+.. -+| .+||+|.++.....+.+ ++++++
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t-~I~~ld 224 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVAT-HILELD 224 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhh-heEEec
Confidence 34455677777888889999976221 11122223444443 345 79999999998887544 344444
No 443
>PTZ00494 tuzin-like protein; Provisional
Probab=94.09 E-value=0.3 Score=51.22 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=73.7
Q ss_pred ccccCCcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHH
Q 005860 164 SLIDVSEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELR 243 (673)
Q Consensus 164 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 243 (673)
.+..+..+|.|+.+-..+...|..-.. .-++++.+.|.-|.||++|.+.....+.+ ..++|.|... ++
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~----aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---ED 433 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAP----SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---ED 433 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccC----CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cc
Confidence 344567899999998888888876653 45899999999999999999877765333 4677877654 44
Q ss_pred HHHHHHHHhhCCCCC-cCcH----HHHHHHHHHHhCCCeEEEEEc
Q 005860 244 IAKAIIEALEGFVPT-VGEL----NSLLESIRASLVGKKFLLILD 283 (673)
Q Consensus 244 ~~~~i~~~l~~~~~~-~~~~----~~~~~~l~~~l~~kr~LlVLD 283 (673)
-++.|++.++.+.-+ ..+. .+.-..-+....++.-+||+-
T Consensus 434 tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk 478 (664)
T PTZ00494 434 TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR 478 (664)
T ss_pred hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 678899999876432 2222 222222333345666666654
No 444
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.07 E-value=0.16 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|+|||||++.+...
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 468999999999999999999885
No 445
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.05 E-value=0.24 Score=53.63 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC
Q 005860 178 KSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP 257 (673)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 257 (673)
++++.+.|..+- ..-.++.|.|.+|+|||||+.++... ....-..++|++..+. ...+.. -++.++....
T Consensus 66 i~~LD~~LgGGi-----~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~ 135 (446)
T PRK11823 66 IGELDRVLGGGL-----VPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKL-RAERLGLPSD 135 (446)
T ss_pred cHHHHHHhcCCc-----cCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHH-HHHHcCCChh
Confidence 345555554332 33569999999999999999777664 2222345788876543 333322 2444443211
Q ss_pred -----CcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 258 -----TVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 258 -----~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
...+++.+...+.+ .+.-+||+|.+
T Consensus 136 ~l~~~~e~~l~~i~~~i~~---~~~~lVVIDSI 165 (446)
T PRK11823 136 NLYLLAETNLEAILATIEE---EKPDLVVIDSI 165 (446)
T ss_pred cEEEeCCCCHHHHHHHHHh---hCCCEEEEech
Confidence 12334444444432 35568999987
No 446
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.04 E-value=0.068 Score=48.67 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=29.3
Q ss_pred hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCc
Q 005860 176 EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 221 (673)
+.+++|.+.|. + +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~---------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK---------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT---------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc---------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45667777773 2 589999999999999999999863
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.04 E-value=0.063 Score=52.15 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=26.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|..|+|||||++.+..-. ....+.+++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~ 62 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE---KPTRGKIRF 62 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 3589999999999999999999842 233455544
No 448
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.03 E-value=0.19 Score=53.68 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=47.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCc-ccHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDP-FDELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|.|..|+|||||++.+...... +..+++-+.+. ..+.++...+...-... ..+..-. .
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999875322 23333444433 23444444443321110 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122334444 589999999999
No 449
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.02 E-value=0.04 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEccCCChHHHHHHHHhcCc
Q 005860 200 ITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~~ 221 (673)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999988764
No 450
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.02 E-value=0.041 Score=49.95 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.5
Q ss_pred EEEEEccCCChHHHHHHHHh
Q 005860 199 IITIVGMGGIGKTTLAQFAY 218 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~ 218 (673)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 451
>PRK13947 shikimate kinase; Provisional
Probab=94.01 E-value=0.035 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3889999999999999999884
No 452
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.33 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDS 221 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~ 221 (673)
-.+++|+|..|.|||||++.++...
T Consensus 108 Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 108 NKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3589999999999999999999753
No 453
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.98 E-value=0.25 Score=56.07 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|.|||||++.+..-
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998874
No 454
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.98 E-value=0.17 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.++|.+|+||||++..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999777653
No 455
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.96 E-value=0.067 Score=46.18 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=32.8
Q ss_pred cceechhhHHHHHHHh----ccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 170 EIRGRDEEKSSLKSKL----LCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L----~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++|-+-..+.+++.+ .... ..++-|++..|..|+|||.+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~----p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN----PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC----CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 5667665555555444 3333 356899999999999999987666654
No 456
>PRK05973 replicative DNA helicase; Provisional
Probab=93.94 E-value=0.17 Score=49.48 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
-.++.|.|.+|+||||+|.++.... .+ .=..++|++... +..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeC--CHHHHHHHH
Confidence 4689999999999999997665431 22 234567776655 345555554
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.92 E-value=0.039 Score=53.47 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
....+|.++||+|+||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678899999999999999999886
No 458
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.92 E-value=0.64 Score=42.25 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHhhCCCC------CcCcHHHHHHHHHHHhCCCeEEEEEcCC----CCCCccchhhhhhhccCCCCCeEE
Q 005860 240 DELRIAKAIIEALEGFVP------TVGELNSLLESIRASLVGKKFLLILDDM----WTDDYSKWEPFHYCLKNGVRGSKI 309 (673)
Q Consensus 240 ~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVLDdv----w~~~~~~~~~l~~~l~~~~~gs~i 309 (673)
+.....+..+.+++.... +...-++-.-.+.+.+...+-+++-|.- ....-.+..++...+. ...|+..
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 455667777888765421 2223344456677888888888888854 1111223344443333 4578999
Q ss_pred EEEcCChhHHHhccc
Q 005860 310 LVTTRKETVARMMES 324 (673)
Q Consensus 310 ivTtr~~~v~~~~~~ 324 (673)
|+.|.+..++..|.-
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999988654
No 459
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.90 E-value=0.061 Score=55.39 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=81.5
Q ss_pred cceechhhHHHHHHHhccCCcc--c--------ccCCeEEEEEEccCCChHHHHHHHHhcCcccc--ccC---CeEEEEE
Q 005860 170 EIRGRDEEKSSLKSKLLCESSE--E--------IINDIQIITIVGMGGIGKTTLAQFAYNDSDVF--EYF---DKRMWVC 234 (673)
Q Consensus 170 ~~vGr~~~~~~l~~~L~~~~~~--~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F---~~~~wv~ 234 (673)
+..|-..+...|.+........ + ..+.-.++.|+|.+|+||||+.+++....... +.| .+.+-+.
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 4556666777776655322110 0 01223589999999999999998887642111 111 1111111
Q ss_pred -------cC----CcccHHHHHHHHHHHh-------------hCCC--------CCcCcHHHHHHHHHHHhCCCeEEEEE
Q 005860 235 -------VS----DPFDELRIAKAIIEAL-------------EGFV--------PTVGELNSLLESIRASLVGKKFLLIL 282 (673)
Q Consensus 235 -------vs----~~~~~~~~~~~i~~~l-------------~~~~--------~~~~~~~~~~~~l~~~l~~kr~LlVL 282 (673)
+. ..++...++.++.+.. +..+ .+..+-+.-...|.+.+.++.-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 11 1122223333333322 2211 11122233455677888888889999
Q ss_pred cCCCCCCccchh--hhhhhccC--CCCCeEEEEEcCChhHHHhccccce
Q 005860 283 DDMWTDDYSKWE--PFHYCLKN--GVRGSKILVTTRKETVARMMESIHV 327 (673)
Q Consensus 283 Ddvw~~~~~~~~--~l~~~l~~--~~~gs~iivTtr~~~v~~~~~~~~~ 327 (673)
|..... .+... .+...+.. ...|+.+++.|+.+++.+.+.++..
T Consensus 532 DEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 532 DEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 987321 11111 12223332 2368888888888999887765443
No 460
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.90 E-value=0.072 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|.|||||++.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999884
No 461
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.88 E-value=0.054 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+..+|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999875
No 462
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.88 E-value=0.17 Score=48.09 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=26.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccccC--------CeEEEEEcCCc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYNDSDVFEYF--------DKRMWVCVSDP 238 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 238 (673)
.++.|+|.+|+||||++..+.-..-....| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999996666542221222 35788877665
No 463
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.88 E-value=0.32 Score=48.67 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=55.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccH--HHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDE--LRIAKAIIEALEGFVPTVGELNSLLESIRASLV 274 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 274 (673)
..+++++|.+|+||||++..+... ....=..+.+++.. .+.. ..-++...+.++.+.....+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999877653 21111234555543 2222 222223333333221122334444444433222
Q ss_pred -CCeEEEEEcCCCCC--CccchhhhhhhccCCCCCeEEEE
Q 005860 275 -GKKFLLILDDMWTD--DYSKWEPFHYCLKNGVRGSKILV 311 (673)
Q Consensus 275 -~kr~LlVLDdvw~~--~~~~~~~l~~~l~~~~~gs~iiv 311 (673)
.+.=++++|..-.. +....+.+...+....+.-.++|
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LV 191 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 191 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEE
Confidence 24567888977432 22334444444433333334554
No 464
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.88 E-value=0.077 Score=51.77 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=27.7
Q ss_pred hHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 177 EKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...++++.+.... .+..+|||.|++|+||+||...+...
T Consensus 14 ~~~~ll~~l~~~~-----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT-----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT-----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4456666665443 35689999999999999999777664
No 465
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.076 Score=51.51 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
.. .+++|+|..|+|||||++.+.... ....+.+++
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 56 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE---KPDGGTIVL 56 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC---CCCCceEEE
Confidence 45 799999999999999999998852 233455554
No 466
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.87 E-value=0.19 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 005860 198 QIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
+++.|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999853
No 467
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.86 E-value=0.07 Score=51.90 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=26.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|..|+|||||++.+..-. ....+.+++
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~ 63 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD---RPTSGEVRV 63 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc---CCCceeEEE
Confidence 3589999999999999999999852 233445544
No 468
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.86 E-value=0.15 Score=54.50 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=54.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-.-++|.|.+|+|||+|+..+.+... +.+-+.++|+-+.+..+ +.++...+...=... ..+..-. -
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999988766522 23347888988877654 345555554431110 1111111 1
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCC
Q 005860 264 SLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 2233455555 469999999999
No 469
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.86 E-value=0.21 Score=47.03 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|.|.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998874
No 470
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.86 E-value=0.071 Score=51.71 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|..|+|||||++.+..-. ....+.+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEE
Confidence 3589999999999999999998842 233455554
No 471
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.16 Score=54.12 Aligned_cols=55 Identities=25% Similarity=0.237 Sum_probs=39.0
Q ss_pred Ccceechh---hHHHHHHHhccCCcc-c-ccCCeEEEEEEccCCChHHHHHHHHhcCccc
Q 005860 169 SEIRGRDE---EKSSLKSKLLCESSE-E-IINDIQIITIVGMGGIGKTTLAQFAYNDSDV 223 (673)
Q Consensus 169 ~~~vGr~~---~~~~l~~~L~~~~~~-~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 223 (673)
.++-|-|+ |+++|+++|.++..- . +..=++=|.++|++|.|||-||++|.-...+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 46778775 567778888655320 0 1123467889999999999999999997544
No 472
>COG4240 Predicted kinase [General function prediction only]
Probab=93.82 E-value=0.21 Score=47.32 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhC-----CCCCcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEG-----FVPTVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l 269 (673)
...-+++|.|+.|+||||++..+++...-+.. ..+...+..+-+-...-.-.++++... .-+...+..-....+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999996332222 466677665544333334444554311 134456666667777
Q ss_pred HHHhCCC
Q 005860 270 RASLVGK 276 (673)
Q Consensus 270 ~~~l~~k 276 (673)
....+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 7777666
No 473
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.82 E-value=0.27 Score=52.40 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=47.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcc-cHHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPF-DELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-..++|+|..|+|||||++.+.+.... +..+..-+.+.. ...++..+.+.+-+.. ..+.... .
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999988885321 233333344433 3344444433321110 1111111 1
Q ss_pred HHHHHHHHHh--CCCeEEEEEcCC
Q 005860 264 SLLESIRASL--VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l--~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1222334444 589999999999
No 474
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.80 E-value=0.22 Score=53.06 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=28.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD 240 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 240 (673)
-..++|+|..|+|||||++.+..... -+..+...+.+...
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergr 196 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGR 196 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccch
Confidence 45899999999999999999987522 24455555555443
No 475
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.076 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 476
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.076 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWV 233 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 233 (673)
-.+++|+|..|+|||||++.+.... ....+.+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 3689999999999999999999842 334555555
No 477
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.75 E-value=0.043 Score=49.99 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 478
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.74 E-value=0.04 Score=53.35 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=52.2
Q ss_pred ccccccceecCCCCcccchhhhcCCCccEEEeccC--CCCccccccccccccCCeeeccccccccccccCC---CCCCCC
Q 005860 572 LIHLRYLRLVGLGTEELPETCCELLNLQVLEIEQC--TSLKRLPLGIGKLVNLRHLTYDDSCLEFIPKGIQ---RLTNLR 646 (673)
Q Consensus 572 L~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~c--~~l~~lP~~i~~L~~Lr~L~l~~~~l~~lP~~i~---~L~~L~ 646 (673)
+..|.+|++.++.++.+- .+-.|++|++|.++.+ +-...++--..++++|++|++++|.++. ++.+. .+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchh
Confidence 344555555555433321 2336889999999987 3344566556677999999999998875 34444 455555
Q ss_pred cCCeeEEcc
Q 005860 647 TLSEFVVVR 655 (673)
Q Consensus 647 ~L~~~~~~~ 655 (673)
.|..|.++.
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555555543
No 479
>PRK14530 adenylate kinase; Provisional
Probab=93.74 E-value=0.042 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999774
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.73 E-value=0.33 Score=52.64 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=53.9
Q ss_pred hhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCC
Q 005860 176 EEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGF 255 (673)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 255 (673)
.-+.++..+|..+- ..-.++.|.|.+|+|||||+.++... ....-..++|++..+. ...+.. -++.++..
T Consensus 78 TGi~~LD~vLgGGi-----~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~ 147 (454)
T TIGR00416 78 SGFGELDRVLGGGI-----VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES--LQQIKM-RAIRLGLP 147 (454)
T ss_pred cCcHHHHHHhcCCc-----cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC--HHHHHH-HHHHcCCC
Confidence 33456666554332 34579999999999999999777553 2222235788876543 333222 12233322
Q ss_pred CC-----CcCcHHHHHHHHHHHhCCCeEEEEEcCC
Q 005860 256 VP-----TVGELNSLLESIRASLVGKKFLLILDDM 285 (673)
Q Consensus 256 ~~-----~~~~~~~~~~~l~~~l~~kr~LlVLDdv 285 (673)
.+ ...+++.+...+.+ .+.-++|+|.+
T Consensus 148 ~~~l~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 148 EPNLYVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred hHHeEEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 11 12344444444332 35568999987
No 481
>PRK13409 putative ATPase RIL; Provisional
Probab=93.73 E-value=0.32 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.-.+++|+|..|+|||||++.+...
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 482
>PRK13975 thymidylate kinase; Provisional
Probab=93.72 E-value=0.048 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999985
No 483
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.70 E-value=0.2 Score=53.60 Aligned_cols=88 Identities=18% Similarity=0.082 Sum_probs=52.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCccc-HHHHHHHHHHHhhCC-------CCCcCcH-----H
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFD-ELRIAKAIIEALEGF-------VPTVGEL-----N 263 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~ 263 (673)
-.-++|.|..|+|||||+..+..... ..+=..++++-+.+... +.++..++...=... ..+..-. .
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999988776421 12224677887876543 455555554321110 1111111 1
Q ss_pred HHHHHHHHHh---CCCeEEEEEcCC
Q 005860 264 SLLESIRASL---VGKKFLLILDDM 285 (673)
Q Consensus 264 ~~~~~l~~~l---~~kr~LlVLDdv 285 (673)
.....+.+++ +++++|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecch
Confidence 1233455555 578999999999
No 484
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.69 E-value=0.038 Score=50.99 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 005860 200 ITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 200 i~I~G~gGiGKTtLa~~v~~~ 220 (673)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998885
No 485
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.68 E-value=0.047 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 005860 198 QIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 198 ~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..|.|+|+.|+||||+|+.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999875
No 486
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.67 E-value=0.27 Score=56.19 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCC-----CcCcHHHHHHHH
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVP-----TVGELNSLLESI 269 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 269 (673)
+.-+++-|+|..|+||||||.++.-. ....=..++|+.....+++. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 34689999999999999999664442 22233567899887777643 5666655321 122334455555
Q ss_pred HHHhC-CCeEEEEEcCC
Q 005860 270 RASLV-GKKFLLILDDM 285 (673)
Q Consensus 270 ~~~l~-~kr~LlVLDdv 285 (673)
...++ ++--|||+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 55554 45668999987
No 487
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.66 E-value=0.48 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|.|||||++.+...
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998875
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.66 E-value=0.56 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|.|||||++.+...
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999774
No 489
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.66 E-value=0.057 Score=48.55 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
..++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999877764
No 490
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.66 E-value=0.042 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 005860 199 IITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 199 vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
|++|+|+.|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988885
No 491
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.66 E-value=0.081 Score=54.76 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=35.8
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhc
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYN 219 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 219 (673)
..+||.+..+..+.-.+..+. ..-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~-------~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK-------IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC-------CCeEEEEcCCCCCHHHHHHHHHH
Confidence 568999999988876666543 44577999999999999999975
No 492
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.66 E-value=0.14 Score=56.79 Aligned_cols=47 Identities=19% Similarity=0.045 Sum_probs=35.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
+.++|....+.+++..+..-.. .-.-|.|+|..|+||+++|++++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHh
Confidence 4789998888887776643221 1123789999999999999998874
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.65 E-value=0.36 Score=49.70 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCChHHHHHHHHhcC
Q 005860 196 DIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 196 ~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
...+|+++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888764
No 494
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.15 Score=55.13 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=43.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHHHHHhhCCCCCcCcHHHHHHHHHHHhCCC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAIIEALEGFVPTVGELNSLLESIRASLVGK 276 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 276 (673)
..=|.+||++|.|||-||++|.|. ..-.| ++|-.+ ++ ++..-++ +.......+.+.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----EL----lNkYVGE-----SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----EL----LNKYVGE-----SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HH----HHHHhhh-----HHHHHHHHHHHhhcCC
Confidence 456789999999999999999996 33344 555442 12 2221111 1123334444445678
Q ss_pred eEEEEEcCC
Q 005860 277 KFLLILDDM 285 (673)
Q Consensus 277 r~LlVLDdv 285 (673)
+|.|.+|.+
T Consensus 605 PCVIFFDEi 613 (802)
T KOG0733|consen 605 PCVIFFDEI 613 (802)
T ss_pred CeEEEecch
Confidence 999999998
No 495
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.64 E-value=0.49 Score=53.55 Aligned_cols=24 Identities=42% Similarity=0.456 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccC
Confidence 468999999999999999998764
No 496
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.64 E-value=0.081 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-.+++|+|..|+|||||++.+...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999884
No 497
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.63 E-value=0.056 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCChHHHHHHHHhcC
Q 005860 195 NDIQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 195 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
.++++|+++|..|+|||||.+++.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999888774
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.62 E-value=0.084 Score=51.93 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=27.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEE
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVC 234 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 234 (673)
-.+++|+|+.|+|||||.+.++.- -..-.+.+++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~---l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL---LKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc---CCCCCCEEEEC
Confidence 479999999999999999999993 33345566663
No 499
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.59 E-value=0.11 Score=58.39 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=54.3
Q ss_pred CcceechhhHHHHHHHhccCCcccccCCeEEEEEEccCCChHHHHHHHHhcCccccccCCeEEEEEcCCcccHHHHHHHH
Q 005860 169 SEIRGRDEEKSSLKSKLLCESSEEIINDIQIITIVGMGGIGKTTLAQFAYNDSDVFEYFDKRMWVCVSDPFDELRIAKAI 248 (673)
Q Consensus 169 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 248 (673)
++++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+.. ...+|+..+|..-+. .+...+++.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~---------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v 99 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR---------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTV 99 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHH
Confidence 47899998888887766432 358899999999999999988752 233567778876543 3566677777
Q ss_pred HHHhhC
Q 005860 249 IEALEG 254 (673)
Q Consensus 249 ~~~l~~ 254 (673)
...++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 665543
No 500
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.58 E-value=0.16 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 005860 197 IQIITIVGMGGIGKTTLAQFAYND 220 (673)
Q Consensus 197 ~~vi~I~G~gGiGKTtLa~~v~~~ 220 (673)
-..++|+|..|+|||||++.+.+.
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 467999999999999999999985
Done!